Query 000762
Match_columns 1296
No_of_seqs 429 out of 2892
Neff 7.6
Searched_HMMs 46136
Date Mon Apr 1 23:19:12 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 2E-204 5E-209 1977.1 111.7 1168 53-1276 1-1204(1204)
2 KOG1933 Cholesterol transport 100.0 2E-177 5E-182 1643.7 46.4 1158 51-1284 1-1183(1201)
3 TIGR00918 2A060602 The Eukaryo 100.0 2E-130 4E-135 1252.1 78.3 890 365-1293 38-1135(1145)
4 PF02460 Patched: Patched fami 100.0 1.8E-94 3.9E-99 932.9 68.7 775 400-1275 2-797 (798)
5 KOG1934 Predicted membrane pro 100.0 5.1E-93 1.1E-97 886.1 69.2 812 365-1281 4-836 (868)
6 KOG1935 Membrane protein Patch 100.0 1.6E-79 3.5E-84 714.2 49.1 883 365-1287 54-1082(1143)
7 COG1033 Predicted exporters of 100.0 1.1E-60 2.4E-65 584.3 64.4 719 374-1279 2-725 (727)
8 TIGR00921 2A067 The (Largely A 100.0 5.5E-55 1.2E-59 563.2 69.7 713 383-1274 2-719 (719)
9 TIGR00833 actII Transport prot 100.0 2.1E-44 4.6E-49 469.2 70.3 716 383-1281 1-909 (910)
10 TIGR03480 HpnN hopanoid biosyn 100.0 2.5E-42 5.5E-47 450.2 56.1 572 608-1272 246-856 (862)
11 TIGR00915 2A0602 The (Largely 100.0 5.9E-29 1.3E-33 328.3 56.7 617 608-1293 318-1042(1044)
12 PRK10614 multidrug efflux syst 100.0 6.6E-29 1.4E-33 327.7 53.5 608 608-1276 312-1009(1025)
13 PRK10503 multidrug efflux syst 100.0 3.2E-28 7E-33 320.8 57.0 599 608-1276 321-1023(1040)
14 PRK09579 multidrug efflux prot 100.0 1.7E-28 3.7E-33 322.7 54.3 604 608-1281 311-1008(1017)
15 PRK09577 multidrug efflux prot 100.0 2.8E-28 6E-33 321.6 55.0 599 608-1280 317-1027(1032)
16 COG0841 AcrB Cation/multidrug 100.0 7.8E-29 1.7E-33 319.0 46.9 601 608-1276 309-1007(1009)
17 PRK10555 aminoglycoside/multid 100.0 1.6E-27 3.4E-32 314.7 56.8 600 608-1276 318-1027(1037)
18 PRK15127 multidrug efflux syst 100.0 2.2E-27 4.7E-32 313.2 55.7 601 608-1276 318-1030(1049)
19 TIGR00914 2A0601 heavy metal e 100.0 4.2E-28 9.2E-33 321.7 49.3 607 608-1279 321-1039(1051)
20 PF00873 ACR_tran: AcrB/AcrD/A 100.0 3.6E-28 7.8E-33 323.4 47.0 600 591-1275 296-1020(1021)
21 COG1033 Predicted exporters of 100.0 1.8E-27 4E-32 292.6 36.4 359 366-800 364-725 (727)
22 PF12349 Sterol-sensing: Stero 99.9 1.8E-27 3.9E-32 244.9 15.0 152 661-812 1-152 (153)
23 TIGR00920 2A060605 3-hydroxy-3 99.9 2.4E-27 5.3E-32 287.9 14.1 168 631-805 60-228 (886)
24 TIGR00921 2A067 The (Largely A 99.9 2.7E-24 5.9E-29 278.0 35.4 352 369-795 367-719 (719)
25 PRK13024 bifunctional preprote 99.9 1.1E-22 2.4E-27 257.4 47.1 452 633-1277 269-734 (755)
26 COG3696 Putative silver efflux 99.9 4.2E-23 9.2E-28 249.0 38.2 598 608-1278 314-1021(1027)
27 COG2409 Predicted drug exporte 99.9 8.2E-22 1.8E-26 256.7 50.3 779 374-1282 3-923 (937)
28 PRK14726 bifunctional preprote 99.9 1.2E-20 2.6E-25 237.2 46.6 445 633-1278 375-830 (855)
29 TIGR00833 actII Transport prot 99.9 4.3E-21 9.2E-26 251.1 37.7 179 608-799 721-906 (910)
30 PF03176 MMPL: MMPL family; I 99.9 2E-21 4.3E-26 228.2 28.5 194 591-800 107-306 (333)
31 PRK13023 bifunctional preprote 99.9 4.6E-18 1E-22 211.8 45.7 444 634-1276 282-734 (758)
32 PF03176 MMPL: MMPL family; I 99.8 7.1E-19 1.5E-23 206.6 21.3 200 1078-1279 99-306 (333)
33 PRK12911 bifunctional preprote 99.8 1.1E-15 2.4E-20 192.6 44.9 150 636-800 915-1065(1403)
34 TIGR03480 HpnN hopanoid biosyn 99.8 4.2E-17 9.1E-22 213.8 33.4 194 1083-1278 228-426 (862)
35 PF02460 Patched: Patched fami 99.7 2.1E-15 4.6E-20 196.5 38.0 373 371-796 422-797 (798)
36 COG4258 Predicted exporter [Ge 99.7 1.2E-14 2.6E-19 168.1 36.9 253 611-910 236-490 (788)
37 PRK09579 multidrug efflux prot 99.6 3.8E-14 8.3E-19 187.6 23.7 157 1119-1277 328-490 (1017)
38 TIGR00918 2A060602 The Eukaryo 99.6 6.7E-13 1.5E-17 172.5 33.0 178 609-801 943-1122(1145)
39 PRK10614 multidrug efflux syst 99.6 6.6E-14 1.4E-18 186.0 23.6 159 1118-1278 328-492 (1025)
40 PRK09577 multidrug efflux prot 99.6 7.3E-14 1.6E-18 185.4 22.9 158 1119-1277 334-497 (1032)
41 KOG1934 Predicted membrane pro 99.6 2.3E-12 5E-17 163.3 34.7 373 372-799 456-833 (868)
42 TIGR00915 2A0602 The (Largely 99.6 1E-13 2.2E-18 184.2 23.7 158 1118-1277 334-498 (1044)
43 COG0841 AcrB Cation/multidrug 99.6 5.3E-14 1.2E-18 182.5 19.7 161 1117-1280 324-490 (1009)
44 PRK15127 multidrug efflux syst 99.6 1.5E-13 3.2E-18 182.5 23.8 159 1118-1278 334-499 (1049)
45 TIGR00916 2A0604s01 protein-ex 99.6 1.2E-13 2.7E-18 148.0 18.2 140 1119-1265 44-188 (192)
46 PRK10555 aminoglycoside/multid 99.5 1.7E-13 3.7E-18 182.0 23.4 159 1118-1278 334-499 (1037)
47 PRK13022 secF preprotein trans 99.5 3.3E-13 7.3E-18 153.4 21.9 158 1118-1278 123-285 (289)
48 PRK10503 multidrug efflux syst 99.5 2E-13 4.3E-18 181.2 22.4 160 1116-1277 335-500 (1040)
49 PF00873 ACR_tran: AcrB/AcrD/A 99.5 2.9E-13 6.4E-18 181.1 23.0 192 1081-1278 291-492 (1021)
50 PRK13022 secF preprotein trans 99.5 3.5E-13 7.5E-18 153.3 18.6 165 619-800 119-286 (289)
51 TIGR00916 2A0604s01 protein-ex 99.5 2.7E-13 5.9E-18 145.3 14.8 138 634-785 51-191 (192)
52 TIGR00966 3a0501s07 protein-ex 99.5 1.7E-12 3.6E-17 145.0 21.6 129 1118-1248 94-227 (246)
53 TIGR00917 2A060601 Niemann-Pic 99.5 1.6E-11 3.4E-16 163.4 32.8 152 1125-1278 572-749 (1204)
54 TIGR00914 2A0601 heavy metal e 99.5 1.6E-12 3.5E-17 173.7 23.0 156 1118-1277 337-508 (1051)
55 PRK13024 bifunctional preprote 99.4 6.7E-12 1.4E-16 159.9 21.8 158 1118-1279 262-422 (755)
56 PRK08578 preprotein translocas 99.4 1.4E-11 3E-16 140.3 18.8 154 1119-1278 131-288 (292)
57 PRK05812 secD preprotein trans 99.4 1.2E-11 2.5E-16 149.6 18.9 151 633-798 336-487 (498)
58 TIGR01129 secD protein-export 99.4 1.6E-11 3.6E-16 145.3 19.3 151 1118-1272 244-397 (397)
59 TIGR00966 3a0501s07 protein-ex 99.3 3.3E-11 7.1E-16 134.6 19.5 140 634-787 102-244 (246)
60 PRK05812 secD preprotein trans 99.3 3E-11 6.6E-16 146.0 19.5 154 1119-1276 330-486 (498)
61 TIGR01129 secD protein-export 99.3 2.5E-11 5.4E-16 143.8 17.6 147 632-793 250-397 (397)
62 PRK13023 bifunctional preprote 99.3 7.3E-11 1.6E-15 148.0 21.7 155 1120-1278 276-433 (758)
63 PRK08578 preprotein translocas 99.3 1.6E-10 3.4E-15 131.8 21.6 166 612-800 120-289 (292)
64 PRK14726 bifunctional preprote 99.3 1.5E-10 3.2E-15 146.9 21.9 157 1118-1278 368-527 (855)
65 PRK13021 secF preprotein trans 99.3 2.4E-10 5.2E-15 129.5 20.2 155 1119-1276 123-282 (297)
66 PRK12933 secD preprotein trans 99.2 1.2E-10 2.5E-15 141.2 17.5 152 634-800 444-597 (604)
67 PF02355 SecD_SecF: Protein ex 99.1 2E-09 4.4E-14 114.8 19.4 163 619-798 23-188 (189)
68 PRK12933 secD preprotein trans 99.1 1.3E-09 2.9E-14 132.2 19.6 157 1120-1278 434-596 (604)
69 PRK13021 secF preprotein trans 99.1 2.8E-09 6E-14 120.9 20.3 169 612-798 112-283 (297)
70 PRK12911 bifunctional preprote 99.1 2E-09 4.4E-14 137.1 18.8 144 1130-1279 919-1065(1403)
71 PF02355 SecD_SecF: Protein ex 99.1 5.3E-09 1.1E-13 111.6 19.0 156 1118-1276 27-187 (189)
72 PRK08343 secD preprotein trans 99.0 7.5E-09 1.6E-13 123.0 19.9 178 1085-1272 223-406 (417)
73 COG3696 Putative silver efflux 99.0 1.5E-08 3.3E-13 124.5 18.9 190 1078-1277 294-497 (1027)
74 KOG3664 Predicted patched tran 99.0 2.8E-10 6E-15 141.5 3.5 181 608-800 303-503 (999)
75 COG2409 Predicted drug exporte 98.9 6.6E-08 1.4E-12 127.4 24.0 195 1086-1282 148-350 (937)
76 COG0341 SecF Preprotein transl 98.9 1.6E-07 3.6E-12 106.3 21.3 175 611-803 119-296 (305)
77 PRK08343 secD preprotein trans 98.8 1.5E-07 3.2E-12 112.0 19.7 170 608-793 240-410 (417)
78 PF12349 Sterol-sensing: Stero 98.7 2.4E-07 5.2E-12 95.9 15.6 129 1145-1276 5-137 (153)
79 COG0342 SecD Preprotein transl 98.7 2.4E-07 5.3E-12 112.4 16.5 151 635-800 348-499 (506)
80 COG4258 Predicted exporter [Ge 98.6 2.8E-07 6.1E-12 108.1 11.3 136 632-791 647-782 (788)
81 COG0341 SecF Preprotein transl 98.5 3.4E-06 7.3E-11 95.8 16.4 157 1119-1278 131-292 (305)
82 COG0342 SecD Preprotein transl 98.2 1.8E-05 3.9E-10 96.4 16.8 154 1121-1278 342-498 (506)
83 KOG1935 Membrane protein Patch 98.2 9.3E-06 2E-10 98.6 13.2 125 1148-1275 443-568 (1143)
84 TIGR00920 2A060605 3-hydroxy-3 97.5 0.001 2.2E-08 83.8 14.9 130 1145-1277 89-221 (886)
85 PF03024 Folate_rec: Folate re 95.4 0.0041 9E-08 65.6 0.0 96 85-188 16-117 (167)
86 KOG1933 Cholesterol transport 92.6 0.033 7.2E-07 73.3 -0.1 166 621-800 1010-1178(1201)
87 COG4709 Predicted membrane pro 62.8 29 0.00063 36.8 7.7 26 1076-1101 40-65 (195)
88 PF08006 DUF1700: Protein of u 57.7 32 0.00069 36.8 7.4 22 1077-1098 41-62 (181)
89 KOG3664 Predicted patched tran 50.3 3.6 7.7E-05 53.6 -1.5 139 1141-1282 344-506 (999)
90 TIGR00400 mgtE Mg2+ transporte 47.4 4.5E+02 0.0097 32.5 16.1 69 1209-1279 350-419 (449)
91 COG2239 MgtE Mg/Co/Ni transpor 45.4 6.8E+02 0.015 30.9 18.1 91 1174-1278 326-418 (451)
92 cd07912 Tweety_N N-terminal do 41.1 1.8E+02 0.004 35.4 10.9 70 1115-1195 202-272 (418)
93 PF05393 Hum_adeno_E3A: Human 39.5 68 0.0015 29.6 5.2 31 297-327 41-71 (94)
94 PTZ00370 STEVOR; Provisional 37.4 68 0.0015 36.4 6.0 13 751-763 244-256 (296)
95 PF02754 CCG: Cysteine-rich do 32.7 57 0.0012 29.2 4.0 48 83-130 21-85 (85)
96 PRK02935 hypothetical protein; 32.1 1.8E+02 0.0039 28.0 6.9 59 625-696 9-67 (110)
97 PF11023 DUF2614: Protein of u 31.9 1.4E+02 0.003 29.1 6.3 30 667-696 37-66 (114)
98 COG3301 NrfD Formate-dependent 29.7 8E+02 0.017 28.2 12.6 99 675-775 142-241 (305)
99 PF05297 Herpes_LMP1: Herpesvi 29.3 18 0.00039 40.3 0.0 50 1125-1174 55-105 (381)
100 COG4988 CydD ABC-type transpor 26.3 1E+03 0.022 30.1 14.0 31 1133-1163 127-157 (559)
101 TIGR01594 holin_lambda phage h 26.1 4E+02 0.0086 26.0 8.5 59 1144-1203 43-101 (107)
102 PF03649 UPF0014: Uncharacteri 25.7 1E+03 0.022 27.0 13.6 44 698-741 123-180 (250)
103 PF09946 DUF2178: Predicted me 24.6 3.7E+02 0.008 26.4 8.1 21 763-783 89-109 (111)
104 PRK15081 glutathione ABC trans 24.5 1.2E+03 0.025 27.2 15.1 26 610-635 76-101 (306)
105 PF01914 MarC: MarC family int 24.0 3.1E+02 0.0067 30.0 8.3 61 1165-1226 60-124 (203)
106 PF05106 Phage_holin_3: Phage 23.6 3.3E+02 0.0072 26.2 7.4 58 1144-1202 41-98 (100)
107 PRK10929 putative mechanosensi 23.6 5.9E+02 0.013 35.1 12.3 23 727-749 510-532 (1109)
108 COG1480 Predicted membrane-ass 22.2 1.2E+03 0.026 30.1 13.6 22 1259-1280 445-466 (700)
109 PRK09471 oppB oligopeptide tra 22.2 9.4E+02 0.02 27.9 12.5 21 619-639 84-104 (306)
110 PRK10352 nickel transporter pe 21.7 1.3E+03 0.028 26.9 13.5 26 610-635 79-104 (314)
111 PHA00736 hypothetical protein 20.8 2.7E+02 0.0058 24.2 5.3 15 1253-1267 59-73 (79)
112 PF04906 Tweety: Tweety; Inte 20.2 1.3E+02 0.0027 36.7 4.8 14 1180-1194 235-248 (406)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=2.3e-204 Score=1977.07 Aligned_cols=1168 Identities=57% Similarity=0.960 Sum_probs=1018.9
Q ss_pred eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 000762 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN 128 (1296)
Q Consensus 53 C~~~g~c~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N 128 (1296)
|+|||+||++++++++|||||++|++|+++.+++|+++||+++ +++|||++|+++|++||++++++++|||||++|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 9999999999999999999999999999999999999999854 469999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCcccCCChhHHhhcCCC---CcCHHHH
Q 000762 129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW 205 (1296)
Q Consensus 129 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg~---~~~~~~~ 205 (1296)
|+++||+||||||||+||+||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+|||| +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999976556667999999999999999999999999999999999999997 7899999
Q ss_pred HHhhcccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCcCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 000762 206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK 280 (1296)
Q Consensus 206 ~~flG~~~~~~~~~~P~~i~f~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sC~~~~~~~~~~~~~~~~ 280 (1296)
|+||||++ +++|||||||+++... ..+++|||..+++|||. .++|||+||++ |||.+||+|+++++|+++
T Consensus 161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~ 235 (1204)
T TIGR00917 161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL 235 (1204)
T ss_pred HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence 99999984 3689999999987532 34799999999999986 48999999999 999877777778888886
Q ss_pred ecCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcccchhhcccccCcchhhhccCCCccccc
Q 000762 281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNR 360 (1296)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1296)
. ++|++|+++++|.+++++++.+++..+++++++..........++... +.. ..+... +....+ .
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~------~ 300 (1204)
T TIGR00917 236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEIN-SSN---NQSDQN-TPQRNE------G 300 (1204)
T ss_pred c----CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccc-ccc---cccccc-cccccc------c
Confidence 4 679999999999887776765555444333222111110000000000 000 000000 101111 0
Q ss_pred chhhhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCce
Q 000762 361 IQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI 440 (1296)
Q Consensus 361 ~~~~~~~~~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~ 440 (1296)
...+++++++++|++||.|++||||++|++++++++++++|+.++++++||+++|+|+++++++|+++||++|||++|+
T Consensus 301 -~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~ 379 (1204)
T TIGR00917 301 -QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRI 379 (1204)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccce
Confidence 1347999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccC-CCccccchhhhhccCCCCcCC
Q 000762 441 EELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDD 519 (1296)
Q Consensus 441 eqvii~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~~~~~~~~~~~~ 519 (1296)
||++|+.++++.....++++++++|++++++++++++++. ++++++|+|+||.+ ..|.++|+++||+++.+.+++
T Consensus 380 eqvii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~ 455 (1204)
T TIGR00917 380 EQLIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDP 455 (1204)
T ss_pred EEEEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCc
Confidence 9999987522110112469999999999999999999853 36899999999985 689999999999987554422
Q ss_pred C--------CCcccccccccccCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHH
Q 000762 520 F--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWE 591 (1296)
Q Consensus 520 ~--------~~~~~l~~~~~~~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we 591 (1296)
. ++.+++.+|.+.+ .+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||
T Consensus 456 ~~~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE 531 (1204)
T TIGR00917 456 ENYDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWE 531 (1204)
T ss_pred ccccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHH
Confidence 1 2456677776543 4699999999999999999988889999999999999986533 23357899999
Q ss_pred HHHHHHHHhhccccccCCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHH
Q 000762 592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLS 671 (1296)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~ 671 (1296)
+++.+.++++..+. ...+++++|++++++++|+++.+..|++.++++|++|++|+++++++++.+++++++||+++|+.
T Consensus 532 ~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~ 610 (1204)
T TIGR00917 532 KAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGIS 610 (1204)
T ss_pred HHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHH
Confidence 99999998764321 12258999999999999999999999999999999999999999998776667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcC--CC---------CHHHHHHHHHHH
Q 000762 672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--EL---------PLETRISNALVE 740 (1296)
Q Consensus 672 ~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~--~~---------~~~~~i~~~l~~ 740 (1296)
|++++++|+++++|+++|+|+++++++++++|||+|||||||+|+++++|++..+ +. +.++|+++++++
T Consensus 611 gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~ 690 (1204)
T TIGR00917 611 GVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGE 690 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999998789999999999999999999999988432 22 789999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCC
Q 000762 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS 820 (1296)
Q Consensus 741 ~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~ 820 (1296)
+|+||++|++|++++|++++++++|++|.||+++|+||+++|++|+|+|||+|+++.||++++|.|++||.+.++.....
T Consensus 691 ~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~ 770 (1204)
T TIGR00917 691 VGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISA 770 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875432111
Q ss_pred CCCCCCCCchHHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccC
Q 000762 821 DKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI 900 (1296)
Q Consensus 821 ~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~ 900 (1296)
++...+.+++.+.+|++++|+|+|+++++|++|+++|++++++|++++++|+.|+||+.++|+|||+.+||+.++++|+.
T Consensus 771 ~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~ 850 (1204)
T TIGR00917 771 EKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEV 850 (1204)
T ss_pred ccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhcc
Confidence 11112345678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEe-cCCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCccccCcccchHHHHHHhhccccccccc-ccCC
Q 000762 901 GPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTN 978 (1296)
Q Consensus 901 g~pv~~Vv~-~~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~-~~~~ 978 (1296)
|||+|||++ +.||++++ .|+++|++++|+++|+.++.+ +.+++.+++.+|+|||++|+++. +.||| ...+
T Consensus 851 gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~~------~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~ 922 (1204)
T TIGR00917 851 GPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVFN------NLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTN 922 (1204)
T ss_pred CCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhhc------ccchhcCCchHHHHHHHHHhCcc-ccceeecCCC
Confidence 999999999 68999874 578999999999999988544 45778889999999999999986 57888 4456
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCCcccceeccC
Q 000762 979 GSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG 1058 (1296)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~ 1058 (1296)
+.+|++.+ ++|..|++......++|+.++|+++|++|+++.|+..|++||++.|+.++++++
T Consensus 923 ~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~ 984 (1204)
T TIGR00917 923 GTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQG 984 (1204)
T ss_pred CCcCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeec
Confidence 67776333 357777653222357899999999999999999999999999999999998765
Q ss_pred CCCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1059 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVV 1138 (1296)
Q Consensus 1059 ~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv 1138 (1296)
.+++.|.++||+++|+++++++|++++++++|++++++++..++++|||+.+|+|+|||++|+++++.++++++++||+|
T Consensus 985 ~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V 1064 (1204)
T TIGR00917 985 HANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIV 1064 (1204)
T ss_pred CCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999866789999999999999999999999999999999999999
Q ss_pred HHHHh-chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhccC-CCHHHHHHHHHH
Q 000762 1139 CLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALG 1216 (1296)
Q Consensus 1139 ~~ll~-~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~-~~~~erv~~Al~ 1216 (1296)
+++++ .+++++++++++|++++++++|+|++|||+||++|+++|+|++|++|||+.||.|+|.... +++++|+++|++
T Consensus 1065 ~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~ 1144 (1204)
T TIGR00917 1065 TLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALG 1144 (1204)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99998 5899999999999999999999999999999999999999999999999999999999764 589999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000762 1217 TMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1217 ~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
++|+||+.|+++||++|++||+|+++++|++|||||++++|++|++|||+||||+||++|
T Consensus 1145 ~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917 1145 GMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999889999999999999999999999999999999999999999999999997
No 2
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-177 Score=1643.70 Aligned_cols=1158 Identities=47% Similarity=0.818 Sum_probs=1033.9
Q ss_pred cCeeecccCCCCCCCCcccCCCCCC-CCCCChhhHHHHHhhCCCCCC---CCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 000762 51 EFCAMYDICGARSDRKVLNCPYNIP-SVKPDDLLSSKVQSLCPTITG---NVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1296)
Q Consensus 51 ~~C~~~g~c~~~~~~~~~~c~~~~~-~~~~~~~~~~~l~~~Cp~~~~---~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1296)
++|+|||+||+++.++.+||+++.| +++.......++++.||.+.. .+||++.|++.|++|+++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5899999999998888999999998 666666777889999999864 599999999999999999999999999999
Q ss_pred hhHHhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCcccCCChhHHhhcC--CCCcCHHH
Q 000762 127 RNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG--GGAQNFKD 204 (1296)
Q Consensus 127 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~g--g~~~~~~~ 204 (1296)
+||.++||+||||||||.|++|+++... .|++++|+++.+|++++|+|||+|+|+++|++||++++ ++|+|+++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999988532 29999999999999999999999999999999999885 36778999
Q ss_pred HHHhhcccCCCCCCCCceeEEecCCCCCCCCcccCCCCCcCCCCCC-CCccccCCCCCCCCCCCCCCCCCCCCceEeecC
Q 000762 205 WFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGS-LGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGS 283 (1296)
Q Consensus 205 ~~~flG~~~~~~~~~~P~~i~f~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~~~sC~~~~~~~~~~~~~~~~~~~ 283 (1296)
|++|+|++++. .++||+|+|+.+.+.+..+.+||...++|++.. ++|+|+||++ +|+...+++.+.. ++.+|+
T Consensus 157 ~~~f~g~~~~~--~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~--~c~~~~~~~~~~~--~~~v~~ 230 (1201)
T KOG1933|consen 157 WLEFIGDKNPG--QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPE--TCPASLLLKSPTE--TFVVGG 230 (1201)
T ss_pred HHHHhcCCCcc--CCCcceeccccccCCccceeecccccccCCcccccccchhcchh--hcCccccCCCCcc--ceeecc
Confidence 99999999642 579999999988654445899999999999874 9999999999 9997665544444 466676
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcccchhhcccccCcchhhhccCCCcccccchh
Q 000762 284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQL 363 (1296)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1296)
+..-+..+.+.++|.+++++|+.+......+.|++..+.... .+.++...
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~~~--------------------------~~~~~~~~---- 280 (1201)
T KOG1933|consen 231 IPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGDDGTP--------------------------VDSSPTSD---- 280 (1201)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccccCcc--------------------------ccCCcccc----
Confidence 643333336666777777777776555444433322111000 00011011
Q ss_pred hhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEE
Q 000762 364 SIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEEL 443 (1296)
Q Consensus 364 ~~~~~~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqv 443 (1296)
.++|..++.+|++||.|+++||.+++.+++.+.+.++.|+.+.+++|||++||..++|++|+|+++|+.+||||||+||+
T Consensus 281 ~~~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi 360 (1201)
T KOG1933|consen 281 FSTETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQI 360 (1201)
T ss_pred hhHHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhh
Confidence 15899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCC--CccccchhhhhccCCCCcC---
Q 000762 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ--DCATQSVLQYFKMDPKNFD--- 518 (1296)
Q Consensus 444 ii~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~--~C~v~S~~~~~~~~~~~~~--- 518 (1296)
++.+.+.+.+.. +.+++.+.|++++++|+.++++.... ++++++|+|++|.++ .|.++|++|||++++.+++
T Consensus 361 ~l~~~~~~~~~~-~~i~~~~~l~~vldiq~~v~~~~~~~--~~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~ 437 (1201)
T KOG1933|consen 361 ILTAVNTSSEVY-PPILLVEGLELVLDIQNSVKELLTSS--DNISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKL 437 (1201)
T ss_pred eeeccCCccccC-CchHHHHHHHHHHHHHHHHHHhccCC--CccchheeeeeeccCCcchhhhhhHhhhccChhhhhccc
Confidence 999866554433 34999999999999999999987643 278999999999864 5889999999998776533
Q ss_pred -----CCCCcccccccccccCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHH
Q 000762 519 -----DFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKA 593 (1296)
Q Consensus 519 -----~~~~~~~l~~~~~~~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~ 593 (1296)
-+.|.+|+.+|.+.|. .|+++|++|++|..++||++++++..|+++++||+++|+...... .+.+..||++
T Consensus 438 ~~~~~~~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~~-~~~a~~We~~ 513 (1201)
T KOG1933|consen 438 NDSFFMDFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPEL-TDQAVAWEKA 513 (1201)
T ss_pred cccchhhHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcch-hhHHHHHHHH
Confidence 1357889999998775 699999999999999999987778899999999999998764322 4889999999
Q ss_pred HHHHHHhhccccccCCCeE-EEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHH
Q 000762 594 FVQLAKDELLPMVQSKNLT-LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSG 672 (1296)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~-i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~ 672 (1296)
|.+.++++..+ .+. ++|++|+|+++|+++.+..|..+++++|++|++|+.+++++.+.+++++++||+.+|+.|
T Consensus 514 f~~~~~~~~~~-----~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy~~mf~yi~~~Lg~~~~~r~vlidSkv~lgi~G 588 (1201)
T KOG1933|consen 514 FVNFAKDYLLP-----HLLAISFMAERSIEDEINRESEGDVITVVISYLVMFLYINLALGHYRSCRRVLIDSKVLLGISG 588 (1201)
T ss_pred HHHHHHHHhhh-----ccchheeeccCccchhhccCCcCCceEEEeehHHHHHHHHHHhccCcccceeeeeceeeccccc
Confidence 99999988643 233 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcC--CCCHHHHHHHHHHHhhHHHHHHHH
Q 000762 673 VVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASL 750 (1296)
Q Consensus 673 vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~--~~~~~~~i~~~l~~~g~si~ltsl 750 (1296)
++++++++..++|+++++|++.+.++.+|+||+++++|+||+|+++++|+|..+ +.+.+++|..+++++||+|+.+++
T Consensus 589 v~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~sl 668 (1201)
T KOG1933|consen 589 VLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSSL 668 (1201)
T ss_pred eEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccchhhhccCcHHHHhHH
Confidence 999999999999999999999999999999999999999999999999998643 488999999999999999999999
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCch
Q 000762 751 SEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPG 830 (1296)
Q Consensus 751 t~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~ 830 (1296)
.+..+|+++++++||++|.|++++++++++++++|+|.+.+++.+|.||++.+|.|++||.|.+++. . .....+
T Consensus 669 se~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~~~~r~d~~~~~~~~~~~-----~-~~~~~~ 742 (1201)
T KOG1933|consen 669 SENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRRLDNRIDIFCCVKPSEEE-----S-VRGNEG 742 (1201)
T ss_pred HhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhhhcCCcceEecccccccc-----c-ccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999986541 1 122337
Q ss_pred HHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEec
Q 000762 831 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN 910 (1296)
Q Consensus 831 ~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv~~Vv~~ 910 (1296)
.+.+|++.+|+|+++++.+|++++++|.+++.+++++.++|+.|+||+..+|+|||+.+||+.++++++.|||||+|+++
T Consensus 743 ~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Syl~dyF~~~~e~l~~GPPvyfv~k~ 822 (1201)
T KOG1933|consen 743 LLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSYLSDYFKNLNEFLNVGPPVYFVLKG 822 (1201)
T ss_pred hHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccchhhhHhhhhhhhcccCCCEEEEecC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCccccCcccchHHHHHHhhccccccccc-ccCCCCCCCCCCCC
Q 000762 911 -YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGSYCPPDDQP 988 (1296)
Q Consensus 911 -~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~-~~~~~~~~~~~~~~ 988 (1296)
.+++++. .||++|++.+|+++|+.+++..+.+.++.+|+++|..+|+|||+.|+.|+. .||| +..++.|||+..+.
T Consensus 823 ~~~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~~~~~-~cCr~~~~~g~fc~~~~~~ 900 (1201)
T KOG1933|consen 823 GLDLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWLSPQS-SCCRLKPDPGQFCPPSLND 900 (1201)
T ss_pred CCCCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheeecccC-CccccCCCCCCcCCCCccc
Confidence 7888774 579999999999999999999999999999999999999999999999975 4999 77788999987553
Q ss_pred CCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEE
Q 000762 989 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASS 1068 (1296)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~ 1068 (1296)
..|.+|.........+|+.++|+++|++|+++.|+..|++||++.|+.++++.....+.|+|++
T Consensus 901 ----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~ 964 (1201)
T KOG1933|consen 901 ----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASY 964 (1201)
T ss_pred ----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCCCCceeeecceEEEecCcccchhhh
Confidence 4677787555555668999999999999999999999999999999999998766666799999
Q ss_pred EEEecccccchhhHHHHHHHHHHHHHHhhccc-CceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chh
Q 000762 1069 FRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT-CSF 1146 (1296)
Q Consensus 1069 f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~-~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~-~s~ 1146 (1296)
||+||+++.++.|++++++++|+++.++.+.. +.++|||+++|+|||||++|+..+...++++++.||++..+++ .++
T Consensus 965 F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~~ 1044 (1201)
T KOG1933|consen 965 FMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLDV 1044 (1201)
T ss_pred hhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999986432 6789999999999999999999999999999999999998866 789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhccCC-CHHHHHHHHHHHhhHHHHHH
Q 000762 1147 WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSG 1225 (1296)
Q Consensus 1147 ~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~-~~~erv~~Al~~~G~pVl~g 1225 (1296)
+.+++..+++.|++++++|+|++|||++|++|++|++|++||+|||+.||+|+|....+ ++.+|+.+++..+|..++.|
T Consensus 1045 ~ss~i~~~~~~~~~v~l~g~m~~~~I~~NavS~vNlvm~vgi~vef~~hi~~sf~~s~~~~~~~ra~~~l~s~Gs~v~sg 1124 (1201)
T KOG1933|consen 1045 DSSLIMVLVDEMILVNLVGFMYLWGISLNAVSLVNLVMSVGIAVEFCVHITHSFATSSGPDATERAEEALNSIGSSVFSG 1124 (1201)
T ss_pred ccceeeeeehhhhhhhHHHHHHhhceeehhhhhhhhhhhcchhhhHHHHhhcceeeccCCchhHHHHHHHhccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999998876 89999999999999999999
Q ss_pred HHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchh
Q 000762 1226 ITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLV 1284 (1296)
Q Consensus 1226 ~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~~~~~~ 1284 (1296)
+++|++.|+++|.|++++++++|||+|++.+++++++||++|||++|+++||+...+..
T Consensus 1125 itlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hGliflpvlls~~g~~~~~~~~ 1183 (1201)
T KOG1933|consen 1125 ITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVGALHGLIFLPVLLSLLGPESSRADS 1183 (1201)
T ss_pred eeehhcCceEEEeeccccEEEEEeehHHHHHHHHHheeeeeehhhHHHhcCCccccchh
Confidence 99999999999999999999999999999999999999999999999999998877663
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=1.7e-130 Score=1252.11 Aligned_cols=890 Identities=26% Similarity=0.427 Sum_probs=737.6
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCC-CceeEE
Q 000762 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPF-YRIEEL 443 (1296)
Q Consensus 365 ~~~~~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~-~r~eqv 443 (1296)
+++.+++++|++||.+|+|||++||+++++++++|++|+.++++||||++||++++|++++|++|||++|||+ ||+||+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCccccccccccccc-------------C--CCccc-----
Q 000762 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-------------G--QDCAT----- 503 (1296)
Q Consensus 444 ii~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~-------------~--~~C~v----- 503 (1296)
+|+++++ +|.+++++|.|+++++++++++++++...+++++|+|+|+||. + ..|.+
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9998532 3446999999999999999999997655578999999999998 2 46999
Q ss_pred --------cchhhhhccCCC----CcCCCC--------------Ccccccc-----------cccccCCCcccccc----
Q 000762 504 --------QSVLQYFKMDPK----NFDDFG--------------GVEHVKY-----------CFQHYTSTESCMSA---- 542 (1296)
Q Consensus 504 --------~S~~~~~~~~~~----~~~~~~--------------~~~~l~~-----------~~~~~~s~~~cl~~---- 542 (1296)
+|+.+||+++++ ++++.. |.++++. |.+.+ +.+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~--d~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPA--DPDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCC--CCCCCCccccc
Confidence 888888887766 454322 4556655 87644 2569998
Q ss_pred -cCCCC--------------------CCCccccCcc---CCcccceeEEEEEEEeec---------------ccccccc-
Q 000762 543 -FKGPL--------------------DPSTALGGFS---GNNYSEASAFVVTYPVNN---------------AVDREGN- 582 (1296)
Q Consensus 543 -~~~pl--------------------~~~~~lGg~~---~~~~~~a~a~vit~~l~n---------------~~~~~~~- 582 (1296)
+++|+ .+++++||++ ++++.+|+|+++||.|+| +.+.+.+
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8899999987 457999999999999987 2221111
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccCCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCccccc
Q 000762 583 ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYI 662 (1296)
Q Consensus 583 ~~~~a~~we~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v 662 (1296)
..+.+++||++|.+.+++... ...+..+++...+|+++|+++.++.++..++++|++|++|++++++++ +++
T Consensus 352 a~~va~~We~~F~~~v~~~~~---~~~~~~~~~fss~SL~del~~~s~~~~~~~~is~~lm~~Ya~~~l~~~-----d~v 423 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSLP---KNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRW-----DCA 423 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cccCCceEEEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 113478999999999987542 123334444445999999999999999999999999999999999886 479
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhh
Q 000762 663 SSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVG 742 (1296)
Q Consensus 663 ~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g 742 (1296)
+||+++|+.|++++++|+++++|+++++|+++|.++++++|||+|||||||+|+|+|+|++.++..+.++|++++++++|
T Consensus 424 ~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g 503 (1145)
T TIGR00918 424 KSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTG 503 (1145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997789999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccC--------
Q 000762 743 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS-------- 814 (1296)
Q Consensus 743 ~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~-------- 814 (1296)
+||++||+|++++|++|++++||++|.||++++++++++|++|+|+|||+|++|.||++++|+|++||++.+
T Consensus 504 ~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~~R~D~~cC~~~p~~~~~~~~ 583 (1145)
T TIGR00918 504 ASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQI 583 (1145)
T ss_pred ceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred --CCcCC------------------------------------------CCC---------CC-C---------------
Q 000762 815 --SSYAD------------------------------------------SDK---------GI-G--------------- 825 (1296)
Q Consensus 815 --~~~~~------------------------------------------~~~---------~~-~--------------- 825 (1296)
.+..+ .++ +. .
T Consensus 584 ~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 663 (1145)
T TIGR00918 584 EPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDIAGSTRDLLSQFEDSKAACLS 663 (1145)
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 000 00 0
Q ss_pred -CCCchHHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCE
Q 000762 826 -QRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 904 (1296)
Q Consensus 826 -~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv 904 (1296)
+.....+.+|++++|+|+|+++++|++|+++|++++++|+||+++++.|+||++++|+|||+.+|++.+++||+. +|+
T Consensus 664 ~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~DSyl~~yf~~~~~yF~~-~~v 742 (1145)
T TIGR00918 664 LPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNM 742 (1145)
T ss_pred ccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCCCcHHHHHHHHHHhcCc-Cce
Confidence 001145788999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred EEEEec-CCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCccccCc-----ccchHHHHHHhhccc-c--cccccc
Q 000762 905 YFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP-----AASWLDDFLVWISPE-A--FGCCRK 975 (1296)
Q Consensus 905 ~~Vv~~-~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~-----~~swlddf~~~l~~~-~--~~cc~~ 975 (1296)
|+|+++ .||.+. |+++ ++..++.++.+++.++ +.+|+|||++|+++. . +.||+.
T Consensus 743 y~V~~~~~dy~~~---q~~l--------------~~l~~~f~~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~ 805 (1145)
T TIGR00918 743 YAVTQGNFDYPTQ---QQLL--------------YDLHQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRD 805 (1145)
T ss_pred EEEeCCCCCchHH---HHHH--------------HHHHHHhccCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhh
Confidence 999984 888543 2332 1222344566777655 479999999999972 1 468873
Q ss_pred --cCCCCCCCCCCCCCCCCCCCCCCCCCCccCC---CCcccc-cCC-CCCCCCChhHHHhhHHHHHhcCCCccccCCC--
Q 000762 976 --FTNGSYCPPDDQPPCCPSGQSSCGSAGVCKD---CTTCFH-HSD-LLKDRPSTIQFKEKLPWFLNALPSASCAKGG-- 1046 (1296)
Q Consensus 976 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---c~~c~~-~~~-~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg-- 1046 (1296)
...+.+|++++....| .....+... ++ +..+.. .+. ..+++|++++|++||+.|+++.|..-....+
T Consensus 806 g~~~~~~~~n~s~~~~~~---~~l~~qtg~-~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~ 881 (1145)
T TIGR00918 806 GRITKENYRNGSDDAVLA---YKLLVQTGH-RDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANI 881 (1145)
T ss_pred cccccccccCCccccchh---hhhcccccc-cCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcchhhcccccc
Confidence 2445566554321000 000000000 00 000000 001 1267899999999999999865541000000
Q ss_pred ---CCCcccc-eeccCCCCceEE------EEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHH
Q 000762 1047 ---HGAYTNS-VDLKGYENGIVQ------ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQ 1116 (1296)
Q Consensus 1047 ---~~~y~~~-v~~~~~~~~~I~------as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eq 1116 (1296)
...|..+ .+++.. +..|. .++|++||+++++++|++++++++|+++++++ ..++++||||.+|+|+||
T Consensus 882 ~p~~~~~~~~~~~~~~~-~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~-~~~~~vf~~g~~fvf~eQ 959 (1145)
T TIGR00918 882 YPHPPEWLHDKNDYDPE-NLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYE-GFGLPSYPSGYPFLFWEQ 959 (1145)
T ss_pred cCCcchhcccccccccc-cccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhh-hcCceeccCCCceeHHHH
Confidence 0011111 111111 12233 44899999999999999999999999999986 467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhh
Q 000762 1117 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1196 (1296)
Q Consensus 1117 y~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi 1196 (1296)
|.++...++.++++++++||+|++++++|++.++++++++.+++++++|+|++|||+||++|++|++|+||++||||+||
T Consensus 960 y~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~v~v~G~M~lwgI~LnaVS~vnLimsIGisVefsaHI 1039 (1145)
T TIGR00918 960 YMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIPVVILIASVGIGVEFTVHI 1039 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000762 1197 THAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1197 ~~~f~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
+|+|..+.+++++|+++||.++|.||++|+ +||++|+++|+|++++++..|||+|++++|++|++|||+||||+||++|
T Consensus 1040 ~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~-lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~G 1118 (1145)
T TIGR00918 1040 ALGFLTAIGDRNRRAVLALEHMFAPVLDGA-LSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFG 1118 (1145)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998888899999999999999999998 7999999999999999888888999999999999999999999999999
Q ss_pred CCCccchhhhcccCCCC
Q 000762 1277 PPSRCMLVERQEERPSV 1293 (1296)
Q Consensus 1277 p~~~~~~~~~~~~~~~~ 1293 (1296)
|+.+..+.+..++.++-
T Consensus 1119 p~~~~~p~~~~~~~~~p 1135 (1145)
T TIGR00918 1119 PEPEVSPAEGRSRLPTP 1135 (1145)
T ss_pred CccccCCCCCCCCCCCC
Confidence 99999888877776654
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=1.8e-94 Score=932.93 Aligned_cols=775 Identities=33% Similarity=0.562 Sum_probs=641.5
Q ss_pred hhccccceeecCCCccccCCCChhHHHHHHhhhccC----CCCceeEEEEEecCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 000762 400 CLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLA----PFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKI 475 (1296)
Q Consensus 400 ~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg----~~~r~eqvii~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i 475 (1296)
+.|+.++..+.|.. .|.|++++++.|....++-|+ +..+. +++..+ + .++|+++++.|+++.+++++|
T Consensus 2 ~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~--~~i~a~-~----~~~nlL~~~~l~ei~~l~~~I 73 (798)
T PF02460_consen 2 SSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRF--VIIIAK-D----GGSNLLRPEYLDEILQLDDFI 73 (798)
T ss_pred CCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEE--EEEEEe-c----CCCCCcCHHHHHHHHHHHHHH
Confidence 45777888888865 899999999998765555443 33332 233322 1 123699999999999999999
Q ss_pred hh-ccccccCcccccccccccccCCCccccchhhhhcc-CCCCcCCCCCcccccccccccCCCcccccccCCCCCCCccc
Q 000762 476 DG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKM-DPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTAL 553 (1296)
Q Consensus 476 ~~-l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~s~~~cl~~~~~pl~~~~~l 553 (1296)
.+ ++..++++.++++|+|.++-+..|..++..++... +..+ ..-.+.++ +...++.|++....+
T Consensus 74 ~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ltyP---------~~~~~~~~~~l~~~~ 139 (798)
T PF02460_consen 74 MNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNRSN-----DNINLTYP---------IMNIFGQPIFLGPNF 139 (798)
T ss_pred HHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhccC-----CceeecCC---------ccCCCCcccccCcee
Confidence 87 66666677899999999976678888877764211 1110 01112222 345568888888888
Q ss_pred cCccC----CcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccCCCeEEEEcccchHHHHHHhhh
Q 000762 554 GGFSG----NNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRES 629 (1296)
Q Consensus 554 Gg~~~----~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl~~ei~~~~ 629 (1296)
||+.. +.+.+|++++++|.++... ++..+.+++||+++.+.++++. .+.++++++.+++++++|+++.+
T Consensus 140 ggv~~~~~~~~i~~a~a~~l~y~l~~~~---~~~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~~ 212 (798)
T PF02460_consen 140 GGVTTDPDNGNIESAKAVVLTYMLNTDD---EEQEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRNS 212 (798)
T ss_pred cCccccCCcchhheeEEEEEEEEccccc---chhhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHHH
Confidence 98752 3578899999999997432 2345678899999998887643 23479999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhc
Q 000762 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAV 709 (1296)
Q Consensus 630 ~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgI 709 (1296)
..+++.+.+++++|++|+.+.+.+.+....++++||+++|+.|++++++|+++++|++.++|+++++ ++.++|||+|||
T Consensus 213 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgI 291 (798)
T PF02460_consen 213 QTLVPLFAIGFALMFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGI 291 (798)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHH
Confidence 9999999999999999999987765545667899999999999999999999999999999999998 588999999999
Q ss_pred cccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 710 GVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (1296)
Q Consensus 710 GvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~ 789 (1296)
||||+|+++++|++..+..+.+||++++++++||||++||+|++++|++|+++++|++|.||++++++|+++|++|+|+|
T Consensus 292 GvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f 371 (798)
T PF02460_consen 292 GVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFF 371 (798)
T ss_pred HHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccCcccccccccCCCcC-----CCCC-CCCCCCchHHHHHHHHHccccccccceeeehHHHHHHHHHH
Q 000762 790 VALIVFDFLRAEDKRVDCIPCLKLSSSYA-----DSDK-GIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLA 863 (1296)
Q Consensus 790 palL~l~~~r~~~~r~d~~~c~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~ 863 (1296)
+|+|+++.||++++|++++||.+..+... ...+ ....+....+.++++++|+|++.++++|++++++|++++++
T Consensus 372 ~a~l~l~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~ 451 (798)
T PF02460_consen 372 PAILVLDGRREAAGRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGV 451 (798)
T ss_pred HHHHHHHHHHHHhcccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999964322110 0000 00112234678899999999999999999999999999999
Q ss_pred HHhhhhccCCCCcccccCCCCchhhhHHHHHHhhc-cCCCCEEEEEec-CCCCchhhhhhhhccccccCcchhHHHHHHh
Q 000762 864 SIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL-RIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRA 941 (1296)
Q Consensus 864 si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~-~~g~pv~~Vv~~-~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~ 941 (1296)
|+||+.+++.|+|+++++|+|||+.+|++..++|+ +.|+|+++++++ .|+++++. |+++ .++.+++++.
T Consensus 452 siyG~~~i~~gld~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~-~~~l--------~~lv~~fe~~ 522 (798)
T PF02460_consen 452 SIYGCTQIKEGLDPEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPEN-QDRL--------NSLVQEFENS 522 (798)
T ss_pred HHHhhcccCCCCChhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchHH-HHHH--------HHHHHHHhcc
Confidence 99999999999999999999999999999998887 568999999985 68888753 4444 3555555543
Q ss_pred ccCCCCccccCcccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCC
Q 000762 942 SLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRP 1021 (1296)
Q Consensus 942 ~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P 1021 (1296)
. .....+++.+|++||.+|+++....++ ++ .
T Consensus 523 ~----~~~~~~~t~~WL~~y~~~l~~~~~~~~-----------~~----------------------------------~ 553 (798)
T PF02460_consen 523 P----YSIGNNSTSFWLRDYLNFLNSINSSFQ-----------DD----------------------------------N 553 (798)
T ss_pred c----cccccccchhhHHHHHHHHhhcccccc-----------cc----------------------------------c
Confidence 1 122334568899999999975210000 00 0
Q ss_pred ChhHHHhhHHHHHhcCCCccccCCCCCCcccceecc--CCCCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhcc
Q 000762 1022 STIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDS 1099 (1296)
Q Consensus 1022 ~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~--~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~ 1099 (1296)
+.+.|+..+++|+...+. ..|..++.++ ..+...|.+++|++.+++..++++.++.++++|+++++++
T Consensus 554 ~~~~~~~~l~~FL~~~~~--------~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~-- 623 (798)
T PF02460_consen 554 DKEFFYNLLPEFLNSPEY--------RHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYS-- 623 (798)
T ss_pred cceeeeccchhhhccccc--------cccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcce--
Confidence 012356777888876322 2355555554 2345679999999999999999999999999999998774
Q ss_pred cCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 000762 1100 LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSV 1179 (1296)
Q Consensus 1100 ~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSl 1179 (1296)
++++++|+..+.|+|||.++.+++++++++|++++++++++++.+++.++++++++.++.++++|+|++||++||++|+
T Consensus 624 -~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~ 702 (798)
T PF02460_consen 624 -DFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSM 702 (798)
T ss_pred -ecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhhhhhhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 000762 1180 VNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL 1258 (1296)
Q Consensus 1180 v~lviaiGisVDf~iHi~~~f~~~~~-~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~ 1258 (1296)
++++|+||++|||++|++|+|..+.+ ++++|+++||+.+|.||++|+ +||++|+++|+|++++++++| |++++++++
T Consensus 703 v~l~~~iG~sVd~~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~-~st~l~~~~l~f~~~~~~~~f-f~~~~l~~~ 780 (798)
T PF02460_consen 703 VNLIMSIGFSVDFSAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGA-LSTFLGVLPLAFSPSYIFRVF-FKTVFLVII 780 (798)
T ss_pred HHHHHHhchhhHHHHHHHHHheecccchHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999887 899999999999999999998 588999999999999999987 788888899
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000762 1259 LGFLHGLVFLPVVLSVF 1275 (1296)
Q Consensus 1259 ~g~lh~Lv~LPvLLs~~ 1275 (1296)
+|++|||++||++|+++
T Consensus 781 ~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 781 FGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999987
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=5.1e-93 Score=886.10 Aligned_cols=812 Identities=24% Similarity=0.428 Sum_probs=673.1
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCC---cee
Q 000762 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFY---RIE 441 (1296)
Q Consensus 365 ~~~~~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~---r~e 441 (1296)
.+++.+.++|+++|.+++||||..++++++++++++.|+..++.+.|+.++|.|.|+++|.|++.+.+.++-++ +..
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 57888999999999999999999999999999999999888888999999999999999999999999887633 222
Q ss_pred EE-EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhh-ccccccCcccccccccccccCCCccccchhhhhccCCCCcCC
Q 000762 442 EL-ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDD 519 (1296)
Q Consensus 442 qv-ii~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i~~-l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~ 519 (1296)
+- ++... ++||++++++++++.++.+.+.+ ++.+.++...++.|+|.+.-+..|..+.....++++..
T Consensus 84 ~~~~~~~~------~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~---- 153 (868)
T KOG1934|consen 84 IFRFIYLK------DGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTI---- 153 (868)
T ss_pred eEEEEEec------cCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccC----
Confidence 21 12221 35689999999999999999984 55555667789999998865556665555544443211
Q ss_pred CCCcccccccccccCCCcccccccCCCCCCCccccCcc----CCcccceeEEEEEEEeecccccccchhHHHHHHHHHHH
Q 000762 520 FGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 595 (1296)
Q Consensus 520 ~~~~~~l~~~~~~~~s~~~cl~~~~~pl~~~~~lGg~~----~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~ 595 (1296)
.+..-.+.|+ -+..+|.|++....+||++ ++++.+|+++++.|.++-..+ +..+.+++||+++.
T Consensus 154 ~~~~~~lTYP---------~~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~---~~~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 154 SRPQFNLTYP---------ITEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTD---ETEQVAKEWERSLE 221 (868)
T ss_pred CCCceEEecC---------ccccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCc---chHHHHHHHHHHHH
Confidence 0001123333 2345667777778888874 345789999999999985432 45678999999998
Q ss_pred HHHHhhccccccCCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHH
Q 000762 596 QLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVL 675 (1296)
Q Consensus 596 ~~~~~~~~~~~~~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~ 675 (1296)
+.++++. ++..+++++.+...+.+|+.|....-++.+.+++++|++|..+... ..++++||++++++|+++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f~il~~F~~~t~~-----~~~~v~SKp~lai~g~l~ 292 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGFAILVIFSILTSF-----MIDWVRSKPILAILGVLS 292 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHHHHHHHHHHHhhc-----chhhhhhhHHHHHHHHHh
Confidence 8887653 3445999999999999999999999999999999999998877642 345799999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000762 676 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLA 755 (1296)
Q Consensus 676 v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~ 755 (1296)
.++|+++++|++.|+|++++. +..++|||++||||||+|+++++|+|+.+..+.++|++++++++||||++||+|.+++
T Consensus 293 p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SItITSlTn~ls 371 (868)
T KOG1934|consen 293 PVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSITITSLTNVLS 371 (868)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCC-----CCCCCCCch
Q 000762 756 FAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSD-----KGIGQRKPG 830 (1296)
Q Consensus 756 F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~-----~~~~~~~~~ 830 (1296)
|++|+++++|++|.||+++++|++++|++|+|||.|+|++.++|+.+++++.++|...+.++.... +......+.
T Consensus 372 FgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 451 (868)
T KOG1934|consen 372 FGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLEKTEEQKSSSSSSSSSLHNP 451 (868)
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCccccccccccCcccccccccc
Confidence 999999999999999999999999999999999999999999999999987766654433221100 001123445
Q ss_pred HHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccC-CCCEEEEEe
Q 000762 831 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI-GPPLYFVVK 909 (1296)
Q Consensus 831 ~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~-g~pv~~Vv~ 909 (1296)
...+++++.|+++++++++|..++++|++++.+++||+.+++.|+|+.+++|+|||+.++++..++++.. |.++.+++.
T Consensus 452 ~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~ 531 (868)
T KOG1934|consen 452 ILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSLRLQEKYFWEYGQQVAVFVN 531 (868)
T ss_pred hHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHHHHHHHHhhccCceEEEEEc
Confidence 6788999999999999999999999999999999999999999999999999999999999999999865 688999888
Q ss_pred c-CCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCccccCcccchHHHHHHhhcccccccccccCCCCCCCCCCCC
Q 000762 910 N-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP 988 (1296)
Q Consensus 910 ~-~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~ 988 (1296)
+ +|+++++...+ + +++.++++.. + .+...+.+..|+++|.+|.... +....
T Consensus 532 np~dl~~~~~~~~-~--------~~~~~~fE~~---~-~~~G~~sT~~wlr~y~~~~~~~---------~~~~~------ 583 (868)
T KOG1934|consen 532 NPPDLSNPENRDN-L--------NELVSEFEST---P-YSMGRESTKFWLREYLNFLFEK---------NAELE------ 583 (868)
T ss_pred CCccCCCHHHHHH-H--------HHHHHHHhcC---C-cccCcccchhHHHHHHHHHhhh---------ccccc------
Confidence 5 88887754322 1 3344444432 2 2334455677999999985421 11100
Q ss_pred CCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhHHHhhHH-HHHhcCCCccccCCCCCCcccceeccC--CCCceEE
Q 000762 989 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLP-WFLNALPSASCAKGGHGAYTNSVDLKG--YENGIVQ 1065 (1296)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~-~fl~~~p~~~c~~gg~~~y~~~v~~~~--~~~~~I~ 1065 (1296)
...++|...+. +|+.. | +...+.+++.++. .++..+.
T Consensus 584 --------------------------------~~~~~~~~~~~~~fl~~-~-------~~~~~~~di~~~~~~~~~~~i~ 623 (868)
T KOG1934|consen 584 --------------------------------DNDDEFYDHLYESFLKS-P-------EFSFWRNDIVFDNKSDEETIIF 623 (868)
T ss_pred --------------------------------CCCcchhhhhHHHHhcc-c-------ccccCccceEeccCCCCCceEE
Confidence 00123333333 33332 2 2234566666542 3456788
Q ss_pred EEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 000762 1066 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 1145 (1296)
Q Consensus 1066 as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s 1145 (1296)
+++|.+..++..+.+|..++++.+|++++++ .++++.+|.+.+.|.|||.++...++++++.++++|++|++++..+
T Consensus 624 ~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~---~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~ 700 (868)
T KOG1934|consen 624 AFRFTIGLTNLTKWNERTRLLETWRKIADEY---SDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPN 700 (868)
T ss_pred EEEEEEEEeccCCHHHHHHHHHHHHHHHhhc---cCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999999987 4578888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhccCC--CHHHHHHHHHHHhhHHHH
Q 000762 1146 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG--DKNQRMKEALGTMGASVF 1223 (1296)
Q Consensus 1146 ~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~--~~~erv~~Al~~~G~pVl 1223 (1296)
+...++++++++.|.+|++|+|.+||++||++||+.++|+||++|||++|++++|..+++ ++++|+++||+.+|+||+
T Consensus 701 ~~~~~~it~si~SI~~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~ 780 (868)
T KOG1934|consen 701 PLCVFWITLSIVSINIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVL 780 (868)
T ss_pred hHHHHHHHHHHhheeehHhhhhHHhcCCccHHHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999998877 899999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 000762 1224 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1281 (1296)
Q Consensus 1224 ~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~~~ 1281 (1296)
+|+ ++|++|++||+|.++++.++| ||+.++++.+|++|||+|||++|+.+.+....
T Consensus 781 Qa~-lSTiL~v~pL~~V~sYmv~vF-~KTv~LVv~~GllHGLv~LPviLs~f~~~~~~ 836 (868)
T KOG1934|consen 781 QAG-LSTILGVLPLLFVPSYMVQVF-FKTVVLVVTLGLLHGLVFLPVILSLFPPIKKK 836 (868)
T ss_pred hhh-hHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhc
Confidence 998 699999999999999999998 78888899999999999999999999875433
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-79 Score=714.19 Aligned_cols=883 Identities=26% Similarity=0.406 Sum_probs=674.1
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCC-CCceeEE
Q 000762 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAP-FYRIEEL 443 (1296)
Q Consensus 365 ~~~~~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~-~~r~eqv 443 (1296)
+.....++++.++|.+|.||-|.+|.+.+++..+|++|+...++|||.++||+..+++..+|.+|..+ .|. ..-+.|+
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~-lgee~~~~~Q~ 132 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPE-LGEENGLTGQL 132 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccc-cchhcCCCcee
Confidence 57888999999999999999999999999999999999999999999999999999999999998733 332 2233489
Q ss_pred EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCC---------------Cccccchhh
Q 000762 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ---------------DCATQSVLQ 508 (1296)
Q Consensus 444 ii~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~---------------~C~v~S~~~ 508 (1296)
+|.++. .+|.|+++++.|.+..++-.++...++..-++.+++.|+|+||.+. .|.+..|++
T Consensus 133 lIQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlD 208 (1143)
T KOG1935|consen 133 LIQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLD 208 (1143)
T ss_pred EEECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchh
Confidence 998743 2456899999999999999988887765567899999999998641 688888876
Q ss_pred hhccCCC-----------------CcCCCCCcccc------------------------cccccccCCCcccccc-----
Q 000762 509 YFKMDPK-----------------NFDDFGGVEHV------------------------KYCFQHYTSTESCMSA----- 542 (1296)
Q Consensus 509 ~~~~~~~-----------------~~~~~~~~~~l------------------------~~~~~~~~s~~~cl~~----- 542 (1296)
.|-...+ +++...-++.+ +.|++. .+.+|-++
T Consensus 209 CfWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~P--ldp~CP~sApn~~ 286 (1143)
T KOG1935|consen 209 CFWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLNP--LDPECPPSAPNKN 286 (1143)
T ss_pred hhcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCCC--CCCCCCCCCcccc
Confidence 5432111 11110000000 133321 11233221
Q ss_pred cCCCCCC--------------------CccccCccC---CcccceeEEEEEEEeeccc------------ccccchh---
Q 000762 543 FKGPLDP--------------------STALGGFSG---NNYSEASAFVVTYPVNNAV------------DREGNET--- 584 (1296)
Q Consensus 543 ~~~pl~~--------------------~~~lGg~~~---~~~~~a~a~vit~~l~n~~------------~~~~~~~--- 584 (1296)
+-+|.+- .+++||... .+..+|+|++-+|.+-..- ...++..
T Consensus 287 s~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a 366 (1143)
T KOG1935|consen 287 SPQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKA 366 (1143)
T ss_pred CCCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHH
Confidence 1122221 134555432 2356778877666553110 0111222
Q ss_pred -HHHHHHHHHHHHHHHhhccccccCCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccc
Q 000762 585 -KKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIS 663 (1296)
Q Consensus 585 -~~a~~we~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~ 663 (1296)
+...+|++.|.+.+.+.+. ++.-+++..+..++.|-+++.++-....++++|++|.+|..+.+.||. +.++
T Consensus 367 ~~vl~awQrnf~~~~~~~~~----~~~~~ih~fsStsldDiL~~Fs~~s~~~iv~gy~lm~~ya~~t~lr~~----~~~~ 438 (1143)
T KOG1935|consen 367 AEVLQAWQRNFTKRVYQHLA----NERRQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRWW----DAVQ 438 (1143)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhcceecccccccHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhh----hhhc
Confidence 3347899999988876543 366788888889999999999998899999999999999999988743 4588
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhH
Q 000762 664 SKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGP 743 (1296)
Q Consensus 664 Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~ 743 (1296)
|...+|+.|++.|.+|.++++|+..++|+.+|.-.+.|+|||.|||||||+|.+.|+|++..+. ++++++-|+++|+
T Consensus 439 sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~---~~~~~~~lk~tG~ 515 (1143)
T KOG1935|consen 439 SQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL---HEEMGELLKETGM 515 (1143)
T ss_pred cccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh---HHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998999999999999999999999999997654 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCC----
Q 000762 744 SITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD---- 819 (1296)
Q Consensus 744 si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~---- 819 (1296)
||++||+.++.+|+.+++.|+|++|.||+.+|+-+.++|+..+++|||++++|.||++.+|.|++||....++...
T Consensus 516 Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~~r~Di~cc~~~~p~~~~~~~~ 595 (1143)
T KOG1935|consen 516 SVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKAGRRDIFCCFRGNPEMATSQSV 595 (1143)
T ss_pred chhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeEeccCCcccCcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875332110
Q ss_pred -------C-------CCC-----CCCCCc---hHHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhhhccCCCCcc
Q 000762 820 -------S-------DKG-----IGQRKP---GLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ 877 (1296)
Q Consensus 820 -------~-------~~~-----~~~~~~---~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~ 877 (1296)
. ..+ ..+..+ --+..|.+++|+|+++++++|.+|++.|.+++++|+||+.+.+.|+|.
T Consensus 596 p~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg~~allg~slyg~t~~~~GLel 675 (1143)
T KOG1935|consen 596 PSNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVGFLALLGASLYGMTRSTDGLEL 675 (1143)
T ss_pred CcccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHHHHHHHHhhhhheeeecccchh
Confidence 0 000 001111 137889999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHhhccCCCCEEEEEec-CCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCccccC----
Q 000762 878 KIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAK---- 952 (1296)
Q Consensus 878 ~~~lP~dS~~~~~~~~i~~~~~~g~pv~~Vv~~-~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~---- 952 (1296)
.+.+|+++.-.++.+.-++||+- .|+|.|+++ .||.+. |+.+ +++-+.+ ....++.+
T Consensus 676 ~DvvP~~t~~~~FL~Aq~kyFsf-Y~m~aVtqg~~dyp~q---Q~ll--------~dyh~sf------~s~k~vik~~n~ 737 (1143)
T KOG1935|consen 676 TDVVPEHTAEAAFLRAQDKYFSF-YPMFAVTQGPFDYPHQ---QQLL--------DDYHQSF------GSSKYVIKNENE 737 (1143)
T ss_pred hhcCCCCCcHHHHHHHHhhhccc-chhheeecCCCCcccH---HHHH--------HHHHHHh------ccCceeecCCCC
Confidence 99999999999999999999985 589999996 777643 2222 1222222 22233322
Q ss_pred -cccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCC-----CCccCCCCcccc-cCCCCCCCCChhH
Q 000762 953 -PAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGS-----AGVCKDCTTCFH-HSDLLKDRPSTIQ 1025 (1296)
Q Consensus 953 -~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~c~~c~~-~~~~~~~~P~~~~ 1025 (1296)
-...|+.-|.+|+...+..-......+.+.....- .+.-++..++. ++...+|..-.. .+-.+.+.-+++.
T Consensus 738 ~l~~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v--~n~S~d~~lA~kL~~qtG~~~~~~~~l~k~rlVd~giInp~~ 815 (1143)
T KOG1935|consen 738 QLPKYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGV--SNGSEDARLAYKLLCQTGSLDNDAGRLGKIRLVDAGIINPEA 815 (1143)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCccccccCC--CCCChHHHHHHHHHHhcCCccchhHhhhhhhhhhccccCHHH
Confidence 12569999999986421000000011111111000 00111111222 222223322111 1112345566789
Q ss_pred HHhhHHHHHhcCCCccccCCC-----CCCcccceeccC--CCCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhc
Q 000762 1026 FKEKLPWFLNALPSASCAKGG-----HGAYTNSVDLKG--YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSD 1098 (1296)
Q Consensus 1026 f~~~l~~fl~~~p~~~c~~gg-----~~~y~~~v~~~~--~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~ 1098 (1296)
|+.||..|.+..|-.-....+ +..|..+.+..+ .....+.-+.|..|...+.+..+++++++..|..+.+++
T Consensus 816 FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~~- 894 (1143)
T KOG1935|consen 816 FYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGLTDTADIVKAIESIRASCEEYT- 894 (1143)
T ss_pred HHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHhhhhhHHHHHHHHHHHHHHHhhcc-
Confidence 999999887642211000000 011111111000 011234445677888899999999999999999999997
Q ss_pred ccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 000762 1099 SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVS 1178 (1296)
Q Consensus 1099 ~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vS 1178 (1296)
..|..-||-|+.++|+|||.++..+.+..+.+-++.+|.++.+++.+.|++.+++..+.+..+.++|+|++.||+||+++
T Consensus 895 s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~i~ 974 (1143)
T KOG1935|consen 895 SLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAGLIVCSLAIMTVELFGFMGLLGIKLSAIP 974 (1143)
T ss_pred cCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhceeeccch
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhhhhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 000762 1179 VVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL 1258 (1296)
Q Consensus 1179 lv~lviaiGisVDf~iHi~~~f~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~ 1258 (1296)
.|.++.+|||+|||++|+.-.|..+-+++..|...|+..+..|+..|+ +++++|+..|++|.+.....|||..+.+++.
T Consensus 975 aViLi~sVGigveFtvhv~l~FlTs~G~rs~R~s~al~~~F~Pv~hG~-lST~lgv~MLs~S~FdFvVryFf~~ltvl~~ 1053 (1143)
T KOG1935|consen 975 AVILIASVGIGVEFTVHVALGFLTALGTRSQRASSALQHMFVPVSHGA-LSTLLGVLMLSFSEFDFVVRYFFAVLTVLTC 1053 (1143)
T ss_pred hHHHHHHhhhchhhhHHHHHHHHHhhccchhHhHHhhhhcchhhhhhH-HHHHhhHheeccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccchhhhc
Q 000762 1259 LGFLHGLVFLPVVLSVFGPPSRCMLVERQ 1287 (1296)
Q Consensus 1259 ~g~lh~Lv~LPvLLs~~gp~~~~~~~~~~ 1287 (1296)
+|.++||++||||||++||+.+..+.+..
T Consensus 1054 lGv~ngL~~lPVlLS~~GP~pEl~p~~g~ 1082 (1143)
T KOG1935|consen 1054 LGVLNGLVVLPVLLSLVGPKPELSPTDGS 1082 (1143)
T ss_pred HHHhccchHHHHHHHhcCCCcccccCCCC
Confidence 99999999999999999998777654433
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-60 Score=584.34 Aligned_cols=719 Identities=16% Similarity=0.249 Sum_probs=521.6
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEecCCCCC
Q 000762 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTH 453 (1296)
Q Consensus 374 f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~~~~~~ 453 (1296)
|+++++++.+||+.++++.+++++++++|+.+++++++.++ ++|+|++..+.++.++++|| ..++.+.+..+
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~~~~-~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~ie----- 73 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTET-FLPKDNEEYKNYDRLYKEFG--SGTSLIVVVIE----- 73 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCCccc-cCCCchHHHHHHHHHHHhhC--CCCceEEEEEe-----
Confidence 78999999999999999999999999999999999999655 58999999999999999998 33355666552
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCC-CCcCCCCCcccccccccc
Q 000762 454 GNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDP-KNFDDFGGVEHVKYCFQH 532 (1296)
Q Consensus 454 ~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 532 (1296)
+.|++++++++.++++++++++.+.+. ++. |+..++.... ..+.+.. +....-.
T Consensus 74 --~~dv~~~e~~~~~~~l~~~l~~i~gV~--~v~-----------------Spa~~~~~~~~g~iP~~~--~~i~~~~-- 128 (727)
T COG1033 74 --GDDVFSPEVLEALDSLEERLEEIPGVS--SVF-----------------SPADLLRQVGYGRIPDSD--SKISEVI-- 128 (727)
T ss_pred --CCCCCCHHHHHHHHHHHHHHhcCCCce--ecc-----------------CHHHHhhhccCCCCCCch--hhhHHHH--
Confidence 346999999999999999999987532 222 3333332211 1111100 0010000
Q ss_pred cCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccCCCeE
Q 000762 533 YTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT 612 (1296)
Q Consensus 533 ~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~~~~~ 612 (1296)
.. .... . .+ ++. ..++...+... .+.. .+ +..+..++..+....+.+.+
T Consensus 129 -----------~~---~~~l---~-~d---~~~-~~i~i~~~~~~------~~~~--~~-~i~~~~~~~~e~~~~~~~~~ 177 (727)
T COG1033 129 -----------ES---NSLL---S-PD---NTH-TLIIIKLESDK------NDAQ--KE-EIYEEIERIIEIAKFPSGVK 177 (727)
T ss_pred -----------hh---hccc---C-Cc---ccc-eEEEEecCcch------hhHH--HH-HHHHhhhhhhhhhcCCCCCe
Confidence 00 0000 0 11 111 22333433211 1110 01 11111122111112356899
Q ss_pred EEEcccchHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 000762 613 LAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (1296)
Q Consensus 613 i~~~~~~sl~~ei~~~~~~d~~~~-~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G 691 (1296)
.+.+|+..+.+.+.+....|+..+ .++.++|++.+.+.++++ ..++++++++++|++|++|+|+|+|
T Consensus 178 ~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~------------~~~llpL~~~l~sv~~tlG~m~llG 245 (727)
T COG1033 178 LYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSV------------RRALLPLIIVLVSVLWTLGAMGLLG 245 (727)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764 667778888888877765 3379999999999999999999999
Q ss_pred ccccchhhhHHHHHhhhccccceEehHHHHHHhc-CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 000762 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 770 (1296)
Q Consensus 692 ~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F 770 (1296)
+|++. .+...|.+++|||+||++|+.+||.++. .+.+.++|+.+|++++|+|++++.+||++||+++.++++|++++|
T Consensus 246 ~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~ 324 (727)
T COG1033 246 IPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEF 324 (727)
T ss_pred CCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99997 7899999999999999999999999964 668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHcccccccccee
Q 000762 771 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVK 850 (1296)
Q Consensus 771 ~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r 850 (1296)
|+.+++|++.+++.++++.|+++.+..+..+ ++. +.+ + ...+.+...+.+. +.+..+++
T Consensus 325 Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~-~~~------~~k----~-------~~~~~~~~~l~~i-~~~~~~~~-- 383 (727)
T COG1033 325 GILLSIGIILAFLSSLTVLPALLILIPKGRK-KRE------EKK----D-------SKKGKLEKRLSKI-AKIIARHP-- 383 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHhhh-hhh------hcc----c-------ccchhHHHHHHHH-HHHhHhhh--
Confidence 9999999999999999999998877655432 111 000 0 1122233333322 44455543
Q ss_pred eehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhhhccccccC
Q 000762 851 IAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCD 930 (1296)
Q Consensus 851 ~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~~~~~~~~~~~~ic~~~~c~ 930 (1296)
+.++++.+++.+++.||..+++.++|.++++|+|++..+.++.+++.+++..+++++++..|..+|+..+ .+
T Consensus 384 ~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~~l~-~m------- 455 (727)
T COG1033 384 VTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPEVLR-WM------- 455 (727)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChHHHH-HH-------
Confidence 3466677788899999999999999999999999999999999999999999999999976656664321 11
Q ss_pred cchhHHHHHHhccCCCCccccCcccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcc
Q 000762 931 SNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTC 1010 (1296)
Q Consensus 931 ~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c 1010 (1296)
+++.+.+++.+.. + ....| +-|..+..+.
T Consensus 456 -d~l~~~l~~~~~~-----V-~s~~s-iv~~vk~~~~------------------------------------------- 484 (727)
T COG1033 456 -DELEEELEKGEEH-----V-FSASS-IVDLVKQVNG------------------------------------------- 484 (727)
T ss_pred -HHHHHHHHhccee-----e-eccch-HHHHHHHHhc-------------------------------------------
Confidence 2333333322110 1 11111 2222211110
Q ss_pred cccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEEEEEecccccchhhHHHHHHHHH
Q 000762 1011 FHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAR 1090 (1296)
Q Consensus 1011 ~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r 1090 (1296)
...|+..+ +...++..|...- ..| ++++...- .......+++|.....++..
T Consensus 485 -------~~~p~~~~----~~~i~~~~~~~~~-----~~~--------~s~~~~~~----~~~~~~~~~~~~~~~~~~~~ 536 (727)
T COG1033 485 -------GIIPDKSK----IQIILEELPESIK-----KRY--------ISGDQLNL----LGYSLGDTQGELEDVGREIL 536 (727)
T ss_pred -------CCCCcchh----HHHHHHhcchhHh-----hcc--------cCCCceee----eecccccchhHHHHHHHHHH
Confidence 01122111 1122222232110 011 01111000 01111234455555444433
Q ss_pred HHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000762 1091 EFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAIL 1170 (1296)
Q Consensus 1091 ~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~ 1170 (1296)
+-.++...++|+++..+|..+++.+....+.+++..+..+++++|++++++.+||+..+++.++|+.+.+...+|+|+++
T Consensus 537 ~~i~~~~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~~~i~~iipi~~~v~~~~~~M~l~ 616 (727)
T COG1033 537 RDIEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNFGLMGLL 616 (727)
T ss_pred HHHHhhcCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333467888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhhccchhhhhhhhhccCC-C-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHH
Q 000762 1171 KIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-D-KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1248 (1296)
Q Consensus 1171 gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~-~-~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f 1248 (1296)
||++|+.|+....+.+|++|||+||++++|+++++ . ++|++.+|++++|++|+.++ +|+.+||++|.||++++...|
T Consensus 617 gI~~~~~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~-ltt~~GF~aLi~S~f~i~snf 695 (727)
T COG1033 617 GIPLTPATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASA-LTTAIGFLALIFSPFPIISNF 695 (727)
T ss_pred CCchhHHHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHH-HHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999998864 3 89999999999999999997 799999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 000762 1249 YFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1279 (1296)
Q Consensus 1249 ~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~ 1279 (1296)
+.+....++++++.+|+++|++|-++.++.
T Consensus 696 -Gll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 696 -GLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 556666789999999999999999987653
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=5.5e-55 Score=563.16 Aligned_cols=713 Identities=14% Similarity=0.140 Sum_probs=495.4
Q ss_pred ccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEecCCCCCCCCCCCCcH
Q 000762 383 RNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 462 (1296)
Q Consensus 383 ~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~~~~~~~~~~~vl~~ 462 (1296)
||||+++++.+++++++++|+.++++++|+.+ |+|+|+|.++..+.++++||.. ..++.+..+ +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~~-~~~~d~~~~~~~~~~~~~fg~~--~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTEK-QLPKDFESYKWYHVLQREFGTS--TKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChhh-hCCCCCHHHHHHHHHHHHHCCC--CeEEEEEEE-------eCCCCCH
Confidence 79999999999999999999999999999965 7999999999999999999832 234444432 2359999
Q ss_pred HHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCcCCCCCcccccccccccCCCcccccc
Q 000762 463 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSA 542 (1296)
Q Consensus 463 ~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~cl~~ 542 (1296)
+.++++.++++++++++.. ++..|..|+-. ++.++ ....++ .+.++.-.+.
T Consensus 72 ~~l~~i~~l~~~l~~~~~V--~~v~s~~~~~~-------------~~~~~--~~~p~~--~~~~~~~~~~---------- 122 (719)
T TIGR00921 72 PVLDYMRRLEQRLREKPYV--TNVRSAADIMR-------------QIPGN--FPLPVT--MPEVRPLMSE---------- 122 (719)
T ss_pred HHHHHHHHHHHHHhcCCCc--ceeecHHHHHH-------------HhcCC--CcCCCC--HHHHHHHHHh----------
Confidence 9999999999999986532 23334433210 00000 000000 0011100000
Q ss_pred cCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccCCCeEEEEcccchHH
Q 000762 543 FKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIE 622 (1296)
Q Consensus 543 ~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl~ 622 (1296)
+ |.. .+.+.++| .++..+...+++..+ . +...+-.+++.+.++++ ..+++++++++|...+.
T Consensus 123 ~--~~~----~~~~~s~d---~~~~~i~v~~~~~~~----~-~~~~~~~~~i~~~~~~~----~~~~~~~~~~~G~~~~~ 184 (719)
T TIGR00921 123 Y--PRS----KEMFLSKD---HTVAIIIVQLKSDAD----Y-KQVVPIYNDVERSLERT----NPPSGKFLDVTGSPAIN 184 (719)
T ss_pred C--cHH----HHhccCCC---CceEEEEEEecCCCC----h-HHHHHHHHHHHHHHhcc----CCCCCcEEEecCcHHHH
Confidence 0 100 00011122 234445555543211 1 11111112232223321 13467999999999988
Q ss_pred HHHHhhhcchhH-HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Q 000762 623 EELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEV 701 (1296)
Q Consensus 623 ~ei~~~~~~d~~-~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v 701 (1296)
.++.+....+.. .+.++++++++.+.+.+|+ +..++++++++++++++++|+++++|++++. ++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs------------~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~~~ 251 (719)
T TIGR00921 185 YDIEREFGKDMGTTMAISGILVVLVLLLDFKR------------WWRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TTLL 251 (719)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHH
Confidence 888887777765 4567777777777777765 3447889999999999999999999999997 6888
Q ss_pred HHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 000762 702 IPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLL 780 (1296)
Q Consensus 702 ~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~ 780 (1296)
+|.+++|+||||++|++++|+++ .++.+.++|+.++++++|+++++|++|+++||+++.++++|++|+||+++++|+++
T Consensus 252 ~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv~~ 331 (719)
T TIGR00921 252 AVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLIT 331 (719)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 99999999999999999999885 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHccccccccceeeehHHHHHHH
Q 000762 781 DFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAF 860 (1296)
Q Consensus 781 ~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~ 860 (1296)
+++.++|++|+++.+..++.+..+.. .+.. .++.+.+.+++.+. +.+..+++ ..++++++++
T Consensus 332 ~~l~~l~~lPall~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~l~~~-~~~~~r~~--~~vl~v~lll 393 (719)
T TIGR00921 332 AYLLTLLVLPALLQSIDIGREKVKKE------IIAI---------GGKSSEIEEELSKV-LSITVRHP--VPALVAALII 393 (719)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccc------cccc---------cCcchHHHHHHHHH-HHHHHhCC--cHhHHHHHHH
Confidence 99999999999998765543221110 0000 01223345555543 44555553 3355666778
Q ss_pred HHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCC-CCEEEEEecCCCCchhhhhhhhccccccCcchhHHHHH
Q 000762 861 TLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEIS 939 (1296)
Q Consensus 861 ~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g-~pv~~Vv~~~~~~~~~~~~~~ic~~~~c~~~sl~~~l~ 939 (1296)
+++++++..+++.+.|...++|+|++..+.++.++++|++. .|+++++++.+..+++.. +++ +++.+.++
T Consensus 394 ~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~~l-~~l--------~~l~~~l~ 464 (719)
T TIGR00921 394 TGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPELV-RFM--------DELSRDIK 464 (719)
T ss_pred HHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHHHH-HHH--------HHHHHHHh
Confidence 88899999999999999999999999999999999999866 678888886555444321 111 12222222
Q ss_pred HhccCCCCccccCcccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCC
Q 000762 940 RASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKD 1019 (1296)
Q Consensus 940 ~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~ 1019 (1296)
+ .+....+.++ .-+.|+.+..+... +
T Consensus 465 ~---~~~v~~v~~~--~si~~~~~~~~~~~-------------~------------------------------------ 490 (719)
T TIGR00921 465 A---TGVAARVFGA--PSIIDLVKEVEGLP-------------A------------------------------------ 490 (719)
T ss_pred h---ccccCcccCC--CCHHHHHHHhcCCC-------------C------------------------------------
Confidence 1 1111111111 11333333222100 0
Q ss_pred CCChhHHHhhHHHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhcc
Q 000762 1020 RPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDS 1099 (1296)
Q Consensus 1020 ~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~ 1099 (1296)
|+. .....+ |.+ ....| +. .++..+ ....... +..+..+..++..+..++...+
T Consensus 491 -~~~-~~~~~l-------p~~-----~~~~~---i~---~~~~~v-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 544 (719)
T TIGR00921 491 -PER-SALEPI-------PED-----EEGGY---IS---GGQIKV-----AVIQVQL-KQGEPKVQGRKILRDVQHEHPP 544 (719)
T ss_pred -CCc-hHHHhC-------CHH-----Hhcce---ec---CCceEE-----EEEecCC-cchhHHHHHHHHHHHHhccCCC
Confidence 000 000001 110 00001 00 000011 1111111 1222333333332222222223
Q ss_pred cCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 000762 1100 LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSV 1179 (1296)
Q Consensus 1100 ~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSl 1179 (1296)
.|+++...|...++.+....+.++......++++++++++++.++|++.+++.++++.++++.++|+|+++|+++|+.++
T Consensus 545 ~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~~~~l~~~i~~~~~~~~~~g~~~~~gi~l~~~~~ 624 (719)
T TIGR00921 545 PGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPSFLAMA 624 (719)
T ss_pred CCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 46778888988888898888989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhhhhhhhccC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHH
Q 000762 1180 VNLVMAVGIAVEFCVHITHAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALV 1257 (1296)
Q Consensus 1180 v~lviaiGisVDf~iHi~~~f~~~~--~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv 1257 (1296)
+.+.+.+|++|||++|+.++|+++. ++.++++++|++++|++|+.++ +|+++||++|+||+.++++.| +.+....+
T Consensus 625 ~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~-lt~~~gf~~l~~s~~~~~~~~-g~~~~~~i 702 (719)
T TIGR00921 625 TTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSG-LTTAGGFLSLLLSHFPIMRNF-GLVQGIGV 702 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhccCHHHHHH-HHHHHHHH
Confidence 9999999999999999999998775 3788999999999999999997 699999999999999999997 44555667
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000762 1258 LLGFLHGLVFLPVVLSV 1274 (1296)
Q Consensus 1258 ~~g~lh~Lv~LPvLLs~ 1274 (1296)
+++++++|+++|++|.+
T Consensus 703 ~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 703 LSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88999999999999863
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=100.00 E-value=2.1e-44 Score=469.16 Aligned_cols=716 Identities=15% Similarity=0.170 Sum_probs=474.2
Q ss_pred ccchHHHHHHHHHHHHHhhcccccee-ecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEecCCCCCCCCCCCCc
Q 000762 383 RNPTLVLSLSMALVLLLCLGLIRFEV-ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVT 461 (1296)
Q Consensus 383 ~~P~~vl~~~llv~~~l~~Gl~~l~i-etd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~~~~~~~~~~~vl~ 461 (1296)
||||+++++|+++++++....+.+.. ..+....+.|+++++++..+.++++|++..+...++++... + + .++
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~~~~~~~vv~~~-----~-~-~~~ 73 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLES-----N-E-RLG 73 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCHHHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCCCCCeEEEEEeC-----C-C-CCC
Confidence 79999999999999988776665532 12334467899999999999999999876554444444321 1 1 345
Q ss_pred HHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCcCCCCCcccccccccccCCCccccc
Q 000762 462 ESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541 (1296)
Q Consensus 462 ~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~cl~ 541 (1296)
++..+.+.++.+++++.. . .+.++..+|+.
T Consensus 74 ~~~~~~~~~~~~~l~~~~----~-----------------~V~~v~~~~~~----------------------------- 103 (910)
T TIGR00833 74 DKDYATYDALIAKLRADI----M-----------------HVISVVDFWGP----------------------------- 103 (910)
T ss_pred HHHHHHHHHHHHHHhcCC----C-----------------CceecccCCCC-----------------------------
Confidence 555566666666665421 0 01111111110
Q ss_pred ccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccCCCeEEEEcccchH
Q 000762 542 AFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 621 (1296)
Q Consensus 542 ~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl 621 (1296)
|.... +...+ +.++..+...++...+ .....+--+++.+.+++. ..+++++++++|+..+
T Consensus 104 ----p~~~~----~~~s~---d~~~~~i~V~~~~~~~-----~~~~~~~v~~v~~~i~~~----~~~~g~~v~vtG~~~~ 163 (910)
T TIGR00833 104 ----PEAAE----GLRSD---DGKATIIIVNLAGEKG-----QKEAQEAINAVRRIVEQT----NAPDGLTVHVTGPLAT 163 (910)
T ss_pred ----hhhHh----hccCC---CCCEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHhc----CCCCCeEEEEeChHHH
Confidence 00000 00011 1133334444432111 111111122333333332 1356899999999988
Q ss_pred HHHHHhhhcchhHH-HHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhccccc----c
Q 000762 622 EEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKST----L 696 (1296)
Q Consensus 622 ~~ei~~~~~~d~~~-~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~----~ 696 (1296)
..+..+....|+.. ..++++++++.+.+.+|+ +...+++++++++++++++|+++++|.+.+ .
T Consensus 164 ~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS------------~~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~ 231 (910)
T TIGR00833 164 IADILESGDKDMNRITATTGIIVLIILLLVYRS------------PITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNA 231 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 88888877777664 466777777777777765 334788899999999999999999998643 3
Q ss_pred hhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 000762 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1296)
Q Consensus 697 i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a 775 (1296)
....+++.+++|+|+||++|+++||+++ +++.++++|+.++++++|++++++++|++++|+.+.++++|.+|.||+.++
T Consensus 232 ~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a 311 (910)
T TIGR00833 232 QTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCA 311 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 2333455788999999999999999986 578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHccccccccceeeehHH
Q 000762 776 LAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVIS 855 (1296)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~ 855 (1296)
+|++++++..+|++||++.+.++|...++ + ......+++++ .+.++.+++. .+++
T Consensus 312 ~gvl~a~l~~ltllPall~l~g~~~~~~~---------~-------------~~~~~~~~~~~-l~~~v~r~p~--~vl~ 366 (910)
T TIGR00833 312 VGVLVALLNAVTLTPALLTLEGREGLMKP---------G-------------RKSKIRFIWRR-LGTAVVRRPW--PILV 366 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCC---------c-------------ccchHhHHHHH-HHHHHHhccH--HHHH
Confidence 99999999999999999999886531100 0 00111222332 2445566543 4556
Q ss_pred HHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCC--CCEEEEEecC-CCCchhhhhhhhccccccCcc
Q 000762 856 LFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKNY-NYSSESRQTNQLCSISQCDSN 932 (1296)
Q Consensus 856 ~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g--~pv~~Vv~~~-~~~~~~~~~~~ic~~~~c~~~ 932 (1296)
++++++++++++.++++.++|...++|+|++.++.++.++++|+.+ .|++++++.. +..+++.. +.+ +
T Consensus 367 v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~~l-~~l--------~ 437 (910)
T TIGR00833 367 TTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPALL-ADI--------D 437 (910)
T ss_pred HHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHHHH-HHH--------H
Confidence 6777888899999999999999999999999999999999999877 8899998853 44444211 111 1
Q ss_pred hhHHHHHHhccCCCCccc---cCccc------------------------------------------------------
Q 000762 933 SLLNEISRASLIPQSSYI---AKPAA------------------------------------------------------ 955 (1296)
Q Consensus 933 sl~~~l~~~~~~~~~s~i---~~~~~------------------------------------------------------ 955 (1296)
.+.+.+++ .|+...+ ..|..
T Consensus 438 ~l~~~l~~---~~gV~~V~~~~~p~g~~~~~~~~~~q~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 514 (910)
T TIGR00833 438 RFEREIKA---VPGINMVQETQRPDGVVIKKTYLTFQAGNLGDQLDEFSDQLTSRQAYLLQDAEKIAEAIAGLRLVQAGM 514 (910)
T ss_pred HHHHHHhc---CCCcceeecCCCCCCCccchhhHHHHHhhHhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222211 1111110 00000
Q ss_pred --------------------------------chHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000762 956 --------------------------------SWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 1003 (1296)
Q Consensus 956 --------------------------------swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1296)
.|++-..+|.... ..|+. +.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---------~~-------- 566 (910)
T TIGR00833 515 RLDGENLGQVSLAVRLMQQAISKLQGSAGDVFDIFDPLRRFVAAI-----------PECRA---------NP-------- 566 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------CCccc---------Ch--------
Confidence 0111111111110 01111 00
Q ss_pred cCCCCccc-----------------------------------------------c--cCCCCCCC--------------
Q 000762 1004 CKDCTTCF-----------------------------------------------H--HSDLLKDR-------------- 1020 (1296)
Q Consensus 1004 ~~~c~~c~-----------------------------------------------~--~~~~~~~~-------------- 1020 (1296)
.|..-- + ......+.
T Consensus 567 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (910)
T TIGR00833 567 --VCSVAREIVQAADTVVSSAAKLADAAGQLARGIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYS 644 (910)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 00000000
Q ss_pred -----------------C----ChhHHHhhHHHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEEEEEecccccch
Q 000762 1021 -----------------P----STIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQ 1079 (1296)
Q Consensus 1021 -----------------P----~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~ 1079 (1296)
| +.++|.+.+..|.+ .+++ .+++..+.+.....
T Consensus 645 ~~~~~~~~~~~~~~f~~p~~~~~~~~f~~~~~~~~s------------------------~dg~--~~~~~v~~~~~p~~ 698 (910)
T TIGR00833 645 MTMGKLKGNAMGVDFYAPPRIFTDPNFKAVLDYFLS------------------------PDGH--AARLLVYGDGSPAG 698 (910)
T ss_pred HHHHHhhhhcccCCcccChHHhCCHhHHHHHHHhcC------------------------CCCC--eEEEEEEeCCCCCC
Confidence 1 01222222222221 1121 23444444433333
Q ss_pred hhHHHHHHHHHHHHHHhhc---ccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 000762 1080 IDYVNSMRAAREFSSRVSD---SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVL 1156 (1296)
Q Consensus 1080 ~d~i~al~~~r~ia~~~~~---~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i 1156 (1296)
++-.+.+++.|+..++..+ ..+.++...|......|....+.++......++++++++++++++||+..+++.++++
T Consensus 699 ~~~~~~v~~lr~~~~~~~~~~~~~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~~~pl~~l~~v 778 (910)
T TIGR00833 699 DQGAQEFNAIRTVAEEAIQRADLEPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRAPVAPIVLIGSV 778 (910)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445666776666654322 2356788888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc-----cch-HHHHHHHHHHHhhccchhhhhhhhhccCC-CHHHHHHHHHHHhhHHHHHHHHHH
Q 000762 1157 TMIVVDLMGVMAILKIQ-----LNA-VSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLT 1229 (1296)
Q Consensus 1157 ~~iiv~v~G~M~l~gI~-----Ln~-vSlv~lviaiGisVDf~iHi~~~f~~~~~-~~~erv~~Al~~~G~pVl~g~tlT 1229 (1296)
.+.+...+|+++|.+.. ++. +.++..++.+|++|||+||+..+|+++.+ +.++++.+|+.++|++|+.++ +|
T Consensus 779 ~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~-~~ 857 (910)
T TIGR00833 779 ALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAG-LV 857 (910)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHH-HH
Confidence 99999999999876544 444 45566788899999999999999998753 456899999999999999997 69
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 000762 1230 KLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1281 (1296)
Q Consensus 1230 t~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~~~ 1281 (1296)
+++||..|++++...++.|.+.+.+++++-.++..++++|+++.++|+..+.
T Consensus 858 ~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~~ww 909 (910)
T TIGR00833 858 FAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRWIWW 909 (910)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 9999999999999999887554444444446777789999999999987553
No 10
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=100.00 E-value=2.5e-42 Score=450.19 Aligned_cols=572 Identities=16% Similarity=0.186 Sum_probs=366.1
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHH-HHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~-~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl 686 (1296)
+++++++++|+..+..+..+....|+.. ..++++++++.+++.+|+++ ..++.++++++++++++|+
T Consensus 246 ~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~------------~~l~~l~~i~~s~~~~~~~ 313 (862)
T TIGR03480 246 DHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPR------------LVFAVLVTLIVGLILTAAF 313 (862)
T ss_pred CCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4689999999998888887777777765 56788888888888887642 3677889999999999999
Q ss_pred HHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCch
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1296)
Q Consensus 687 ~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p 765 (1296)
+.++|.+++. ++.+.+.+++|+||||++|++++|+++ .++.+.++++.++++++|++++++++|+++||+++.++++|
T Consensus 314 ~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 314 ATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999997 788889999999999999999999885 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHcccccc
Q 000762 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (1296)
Q Consensus 766 ~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 845 (1296)
.++.||+++++|++++++..++++|+++.+..++.+ ++ .....++.++ +.+..
T Consensus 393 ~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~-~~---------------------~~~~~~~~~~-----~~~~~ 445 (862)
T TIGR03480 393 GVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRR-RK---------------------PPGYATLAPL-----DAFLR 445 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cc---------------------CccchhHHHH-----HHHHH
Confidence 999999999999999999999999999988632211 00 0011122222 22333
Q ss_pred ccceeeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEE-EEEecCCCCchhhhhhhhc
Q 000762 846 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLY-FVVKNYNYSSESRQTNQLC 924 (1296)
Q Consensus 846 ~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv~-~Vv~~~~~~~~~~~~~~ic 924 (1296)
++ +..+++++++++++++++..+++.++++..++|+++...+.++.+.+....++... ++.++. +..
T Consensus 446 ~~--~~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~vl~~~~-----~~~----- 513 (862)
T TIGR03480 446 RH--RRPVLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAPSA-----PEA----- 513 (862)
T ss_pred hc--cHHHHHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEEecCCH-----HHH-----
Confidence 43 23455667778888999999999999999999999999999999888876554332 222221 100
Q ss_pred cccccCcchhHHHHHHhccCCCCcccc------Ccc--cch--HHHHHHhhcccccccccccCCCCCCC-CCCCCCCCCC
Q 000762 925 SISQCDSNSLLNEISRASLIPQSSYIA------KPA--ASW--LDDFLVWISPEAFGCCRKFTNGSYCP-PDDQPPCCPS 993 (1296)
Q Consensus 925 ~~~~c~~~sl~~~l~~~~~~~~~s~i~------~~~--~sw--lddf~~~l~~~~~~cc~~~~~~~~~~-~~~~~~~~~~ 993 (1296)
+.+.+.+++ .|+..... ++. ..| ++++.+-+++... .....| +.+.......
T Consensus 514 -------~~~~~~l~~---~~~V~~v~sl~~~v~~~q~~kl~~i~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~l 576 (862)
T TIGR03480 514 -------RALTERLEA---LPEVDQVVTLPDFVPDDQEAKLALIADLALVLGPTLN-------PGEADPAPSAEEVAAAL 576 (862)
T ss_pred -------HHHHHHHhC---CCCcceEeehhhcCCCCHHHHHHHHHHHHHHhCcccC-------CccCCCCCChHHHHHHH
Confidence 011122221 12111100 000 000 0111111111000 000000 0000000000
Q ss_pred CCC---C--CCCCCccCCCCccc---c-cCCCCCCCCChhH----HHh----hHHH-------HHhcCCCccccCCCC-C
Q 000762 994 GQS---S--CGSAGVCKDCTTCF---H-HSDLLKDRPSTIQ----FKE----KLPW-------FLNALPSASCAKGGH-G 1048 (1296)
Q Consensus 994 ~~~---~--~~~~~~~~~c~~c~---~-~~~~~~~~P~~~~----f~~----~l~~-------fl~~~p~~~c~~gg~-~ 1048 (1296)
++. . ........+|..-. . ...+....+...+ +.+ .++. .++..|-. .... .
T Consensus 577 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---~~~lp~ 653 (862)
T TIGR03480 577 RRLAARLRAAAAKSQDPDAAAAGRLAASLDRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVT---LEDLPP 653 (862)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHccCCCCC---hhhCCH
Confidence 000 0 00000000000000 0 0000000000000 100 0111 00000000 0000 0
Q ss_pred CcccceeccCCCCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHH
Q 000762 1049 AYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINL 1128 (1296)
Q Consensus 1049 ~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l 1128 (1296)
..... +.. .++.. +...+.+ .+..+. +..+++.+++... ....+|....+.+....+..+....+
T Consensus 654 ~~~~~--~~~-~~~~~---~l~v~~~--~~~~~~----~~l~~~~~~v~~~---~~~~tG~~~~~~~~~~~i~~~~~~~~ 718 (862)
T TIGR03480 654 DLRRR--WVA-KDGRA---RLEVFPK--EDLNDN----EALRRFVRAVRKV---APDATGAPVSILESGDTVVGAFLQAF 718 (862)
T ss_pred HHHHh--HcC-CCCCE---EEEEecC--CCcchH----HHHHHHHHHHHhh---CCCccChHHHHHHHHHHHHHHHHHHH
Confidence 00000 100 11111 1112211 111111 1222333333211 11235666666676778888888899
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhccCCCHH
Q 000762 1129 AIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKN 1208 (1296)
Q Consensus 1129 ~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~~~~ 1208 (1296)
.+++++|++++++.++|++.++++++|+.+.++.++|+|+++|++||+.+++.+.+.+|++|||+||+.++|+++.+..
T Consensus 719 ~~a~~~i~lll~~~frs~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~- 797 (862)
T TIGR03480 719 IYALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSG- 797 (862)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHHhccch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998775321
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1209 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1209 erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
.. ...++|++|+.++ +|+++||.+|+||+.+.++.| +.+....++++++.++++||+|+
T Consensus 798 -~~--~~~~~g~ai~~sa-ltt~~gf~~l~~s~~~~~~~~-G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 798 -NL--LQSSTARAVFFSA-LTTATAFGSLAVSSHPGTASM-GILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred -hH--HHhhhHHHHHHHH-HHHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 1246899999997 699999999999999999986 44555567789999999999987
No 11
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=100.00 E-value=5.9e-29 Score=328.32 Aligned_cols=617 Identities=12% Similarity=0.113 Sum_probs=353.8
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
++++++++.++.+ +.+++..+.....++++++++++++++.|+++| .+++..+++.++++.++++|
T Consensus 318 P~g~~~~~~~d~~--~~i~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r------------~~li~~~~iP~s~~~~~~~~ 383 (1044)
T TIGR00915 318 PQGMKYVYPYDTT--PFVSASIEEVVHTLIEAIVLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1044)
T ss_pred CCCCeEEEEEecc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5677777665543 222333333445677788888888888887753 27888889999999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHh--cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC--
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1296)
.++|+++|. ++.+...+++|+.|||++++++++++. .++.++.+|+.++.++++++++.|++|++++|+.+++.+
T Consensus 384 ~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~ttltti~~flPl~~~~G~ 462 (1044)
T TIGR00915 384 AAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1044)
T ss_pred HHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999997 677777888999999999999998874 458899999999999999999999999999999777653
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHH---HHHH
Q 000762 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 839 (1296)
Q Consensus 764 -~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 839 (1296)
-+.++.|++..+++++++++.+++++|++..+..+....... + .. ......++.++ +.+.
T Consensus 463 ~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~--------~-~~-------~~~~~~~~~~~~~~l~~~ 526 (1044)
T TIGR00915 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEH--------H-EF-------KGGFFGWFNRMFDRSTHG 526 (1044)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--------c-cc-------cchHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998876543210000 0 00 00000111111 1233
Q ss_pred ccccc---cccceeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCC--C
Q 000762 840 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIG--P 902 (1296)
Q Consensus 840 ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~~---~~~~i~~~~~~g--~ 902 (1296)
|.+++ +++ |..++++++++++++++...+++.++-|. ..+|+++.+.+ ..+.+++++... |
T Consensus 527 y~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~ 604 (1044)
T TIGR00915 527 YENGVGKILKR--RGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKA 604 (1044)
T ss_pred HHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 44433 223 23355555666777777777777765442 36788886543 445566665432 2
Q ss_pred CEEEEEe--cCCCCchhhhhhhhc-cc----c----ccCcchhHHHHHHh-ccCCCCcc-------ccC-----c-----
Q 000762 903 PLYFVVK--NYNYSSESRQTNQLC-SI----S----QCDSNSLLNEISRA-SLIPQSSY-------IAK-----P----- 953 (1296)
Q Consensus 903 pv~~Vv~--~~~~~~~~~~~~~ic-~~----~----~c~~~sl~~~l~~~-~~~~~~s~-------i~~-----~----- 953 (1296)
.+.-+.. +.+......+..++- .. . .-+.+++.+++.+. .+.|+... +.+ +
T Consensus 605 ~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~g~~~~i~i~l 684 (1044)
T TIGR00915 605 NVESVFTVNGFSFAGRGQNSGMAFIRLKDWEERTGKENSVFAIAGRATGHFSQIKDAMVIAFNPPAILELGNATGFDFFL 684 (1044)
T ss_pred CeeEEEEEecccCCCCCcceEEEEEEecCHHhCCCccCCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEEE
Confidence 3322221 211000000000000 00 0 00112333433332 11222110 000 0
Q ss_pred ------c----cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccc-ccCCCCCCCCC
Q 000762 954 ------A----ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPS 1022 (1296)
Q Consensus 954 ------~----~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~ 1022 (1296)
. ..|-++....+....+- .. -+.+.. .+.+ +.+--. +.+....|. +
T Consensus 685 ~g~~G~d~~~L~~~a~~l~~~l~~~pg~--~~-v~~~~~--~~~~-----------------~~~i~~d~~k~~~~Gl-s 741 (1044)
T TIGR00915 685 QDRAGLGHEALMQARNQLLGLAAQNPAL--TR-VRPNGL--EDEP-----------------QFKLNIDDEKAQALGV-S 741 (1044)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHhcCCCe--EE-eecccc--CCCc-----------------eEEEEECHHHHHHcCC-C
Confidence 0 00111111122111000 00 000000 0000 000000 000000011 1
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCCccc----------c------eeccCCCCceEEE---------------EEE--
Q 000762 1023 TIQFKEKLPWFLNALPSASCAKGGHGAYTN----------S------VDLKGYENGIVQA---------------SSF-- 1069 (1296)
Q Consensus 1023 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~----------~------v~~~~~~~~~I~a---------------s~f-- 1069 (1296)
.++..+.+..-+...+-..-..++. .|.- + +.+...++..|.- .|.
T Consensus 742 ~~~v~~~l~~~~~g~~~~~~~~~~~-~~~v~v~~~~~~~~~~~~l~~l~i~~~~g~~vpL~~va~v~~~~~~~~i~r~n~ 820 (1044)
T TIGR00915 742 IADINTTLSTAWGSSYVNDFIDRGR-VKRVYVQAEPDARMSPEDINKWYVRNASGEMVPFSAFATGRWEYGSPKLERYNG 820 (1044)
T ss_pred HHHHHHHHHHHhCCceeEEEEeCCE-EEEEEEEeChhHcCCHHHHhceEeECCCCCEEEhhheEEEEEccCccceeecCC
Confidence 2223333322111111000000000 0000 0 0000000000000 000
Q ss_pred -EE--ecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 000762 1070 -RT--YHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSF 1146 (1296)
Q Consensus 1070 -~~--~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~ 1146 (1296)
++ .........+..++.+..+++..++ +.|+++-..|. +++...........+++|+++||+++.++|+|+
T Consensus 821 ~~~i~v~~~~~~~~~~~~~~~~i~~~~~~l--P~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~li~lvl~~~F~S~ 894 (1044)
T TIGR00915 821 LPSMEILGSAAPGVSTGEAMAAMEAIAQKL--PPGFGFSWTGM----SYEERLSGSQAPALYALSLLVVFLCLAALYESW 894 (1044)
T ss_pred ceEEEEEEEcCCCCCHHHHHHHHHHHHHhC--CCCceEeeccH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 0000111112333444444444333 23544432221 233333445666678899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhc---cCCCHHHHHHHHHHHhhHHHH
Q 000762 1147 WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV---SSGDKNQRMKEALGTMGASVF 1223 (1296)
Q Consensus 1147 ~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~---~~~~~~erv~~Al~~~G~pVl 1223 (1296)
+.++++++++++.++|++..|+++|.+||.++++++++++|+.|+++|+++..+.+ ++.+.++++.+|.+++.+||+
T Consensus 895 ~~pliI~~~iPlsl~G~~~~l~~~g~~l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIl 974 (1044)
T TIGR00915 895 SIPVSVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPIL 974 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHH
Confidence 99999999999999999999999999999999999999999999999999965542 345889999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCccchhhhcccCCCC
Q 000762 1224 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA----LVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSV 1293 (1296)
Q Consensus 1224 ~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~----iv~~g~lh~Lv~LPvLLs~~gp~~~~~~~~~~~~~~~~ 1293 (1296)
+++ +||++|++||+|+.+..-+.+ +-+.. .++++++.+|+++|+++.++.+. .+.+++++.|++
T Consensus 975 mTt-ltti~gllPla~~~g~g~~~~--~plai~vigGL~~st~ltL~vvP~ly~~~~~~---~~~~~~~~~~~~ 1042 (1044)
T TIGR00915 975 MTS-LAFILGVVPLAISTGAGSGSQ--HAIGTGVFGGMVTATVLAIFFVPLFYVVVRRL---FKRKSTKKEPSV 1042 (1044)
T ss_pred HHH-HHHHHHHHHHHHhcCCChHHh--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcccCCCCCCC
Confidence 996 799999999999876543322 32222 34566778899999999998544 445666677765
No 12
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.98 E-value=6.6e-29 Score=327.73 Aligned_cols=608 Identities=13% Similarity=0.100 Sum_probs=346.8
Q ss_pred CCCeEEEEcccch--HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1296)
Q Consensus 608 ~~~~~i~~~~~~s--l~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~G 685 (1296)
++++++.+.++.+ +++.++. -...++++++++++.+++.|+++| .+++..+++.++++++++
T Consensus 312 P~g~~~~~~~d~~~~i~~~~~~----~~~~~~~~~~lv~~vl~l~l~~~r------------~~li~~~~ip~s~~~~~~ 375 (1025)
T PRK10614 312 PAAIDLQIAQDRSPTIRASLEE----VEQTLAISVALVILVVFLFLRSGR------------ATLIPAVAVPVSLIGTFA 375 (1025)
T ss_pred CCCcEEEEeecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 5678887776543 3333333 233566777777777777777653 277888999999999999
Q ss_pred HHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCc
Q 000762 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1296)
Q Consensus 686 l~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1296)
+|.++|+++|. ++.....+++|+.|||++++++++++. +++.++.+|+.++.++++.+++.|++|++++|+.+++.+-
T Consensus 376 ~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~~g 454 (1025)
T PRK10614 376 AMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454 (1025)
T ss_pred HHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999997 677777888999999999999888774 5688999999999999999999999999999998877654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHcc
Q 000762 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (1296)
Q Consensus 765 ---p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya 841 (1296)
..++.|++..++++++++++++|++|+++.+..++...++.. .. ......+. .+.+.|.
T Consensus 455 ~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~---------~~--------~~~~~~~~-~l~~~Y~ 516 (1025)
T PRK10614 455 LPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQK---------RL--------RGFGRMLV-ALQQGYG 516 (1025)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc---------ch--------hhHHHHHH-HHHHHHH
Confidence 469999999999999999999999999998765432100000 00 00011111 1222233
Q ss_pred c---cccccceeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhhhHHH---HHHhhccCCCCEEE
Q 000762 842 T---ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGYFN---NISEHLRIGPPLYF 906 (1296)
Q Consensus 842 ~---~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~~~~~---~i~~~~~~g~pv~~ 906 (1296)
+ +++++ |..++++++++++++++...+++.++-+. ..+|+++.+.+..+ .+++.+...+.+.-
T Consensus 517 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~~ 594 (1025)
T PRK10614 517 RSLKWVLNH--TRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDN 594 (1025)
T ss_pred HHHHHHHhc--hHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 3 33333 23455666677788888777777666542 24577776654333 34444444444433
Q ss_pred EEec-CCCCchhhhhhhhcccc---cc--CcchhHHHHHHh-ccCCCCccccCcccchHHHHHHhhcc--cccccccccC
Q 000762 907 VVKN-YNYSSESRQTNQLCSIS---QC--DSNSLLNEISRA-SLIPQSSYIAKPAASWLDDFLVWISP--EAFGCCRKFT 977 (1296)
Q Consensus 907 Vv~~-~~~~~~~~~~~~ic~~~---~c--~~~sl~~~l~~~-~~~~~~s~i~~~~~swlddf~~~l~~--~~~~cc~~~~ 977 (1296)
+... .... +...+-.+ ... .- ..+++.+++.+. .+.|+......+. .+. ..-.+ ...--.+..+
T Consensus 595 v~~~~g~~~-~~~~~~~v-~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~----~~~-~~~g~~~~~~i~i~l~G 667 (1025)
T PRK10614 595 VTGFTGGSR-VNSGMMFI-TLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAV----QDI-RVGGRQSNASYQYTLLS 667 (1025)
T ss_pred EEEEecCCC-CceeEEEE-EecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCC----ccc-CcCCCCCCCCEEEEEEC
Confidence 3321 1100 00000000 000 00 112333443332 1122211000000 000 00000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCC----------------ChhHHHhhHHHHHhcCCCcc
Q 000762 978 NGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRP----------------STIQFKEKLPWFLNALPSAS 1041 (1296)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P----------------~~~~f~~~l~~fl~~~p~~~ 1041 (1296)
++ .. .-......+.+..-...+. .+- ..++..+.| +.++..+.+...+...+-..
T Consensus 668 ~d-~~--~L~~~a~~i~~~L~~~pgv-~~v-----~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~~~G~~~~~ 738 (1025)
T PRK10614 668 DD-LA--ALREWEPKIRKALAALPEL-ADV-----NSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNAFGQRQIST 738 (1025)
T ss_pred CC-HH--HHHHHHHHHHHHHhcCCCe-EEe-----ecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceeeE
Confidence 00 00 0000000000000000000 000 000111111 12223333333332211100
Q ss_pred ccCCCCCCccccee----------------ccCCCCceEEEEEEE----------Eecc----------cccchhhHHHH
Q 000762 1042 CAKGGHGAYTNSVD----------------LKGYENGIVQASSFR----------TYHT----------PLNRQIDYVNS 1085 (1296)
Q Consensus 1042 c~~gg~~~y~~~v~----------------~~~~~~~~I~as~f~----------~~~~----------~l~~~~d~i~a 1085 (1296)
-..|+ ..|.-.+. +...++..|.-+.+- ..|. ......+.-++
T Consensus 739 ~~~~~-~~~~i~v~~~~~~~~~~~~L~~l~i~~~~G~~vpL~~vA~i~~~~~p~~I~r~n~~~~i~v~a~~~~g~~~~~~ 817 (1025)
T PRK10614 739 IYQPL-NQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDA 817 (1025)
T ss_pred EecCC-eEEEEEEEeChhHcCCHHHHhceEEECCCCCEEEhhHeEEEEEcCCcccEEecCCeeEEEEEEEeCCCCCHHHH
Confidence 01111 11211110 000011111100000 0000 01111123334
Q ss_pred HHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 000762 1086 MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1165 (1296)
Q Consensus 1086 l~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G 1165 (1296)
.+..++..++++-+.|+++...| .+++......+....+++++++||+++.++|+|++.++++++++++.++|++.
T Consensus 818 ~~~i~~~l~~~~lP~g~~~~~~G----~~~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~~pliI~~tIPlal~G~~~ 893 (1025)
T PRK10614 818 SAAIERAMTQLGVPSTVRGSFAG----TAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALL 893 (1025)
T ss_pred HHHHHHHHHhCCCCCCeEEEecc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444443222333322111 22334455567788899999999999999999999999999999999999999
Q ss_pred HHHHhccccchHHHHHHHHHHHhhccchhhhhhhhh---cc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccC
Q 000762 1166 VMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1241 (1296)
Q Consensus 1166 ~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~---~~-~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~ 1241 (1296)
.|+++|.+||.++++++++.+||.|+++|-++..+. .+ +.+.++++.+|-+.+.+||++++ +|+++|++||+++.
T Consensus 894 ~L~l~g~~l~~~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTt-lTti~GllPlal~~ 972 (1025)
T PRK10614 894 ALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTT-LAALFGALPLVLSG 972 (1025)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHhc
Confidence 999999999999999999999999999999985443 22 34789999999999999999996 79999999999987
Q ss_pred chhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhC
Q 000762 1242 TEVFVVYYFQMYLAL----VLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1242 s~if~~f~f~m~~~i----v~~g~lh~Lv~LPvLLs~~g 1276 (1296)
+...+.+ +-+..+ ++++++.+|+++|++|.++.
T Consensus 973 g~g~~~~--~pmAi~iigGL~~sT~ltL~vvP~lY~~~~ 1009 (1025)
T PRK10614 973 GDGAELR--QPLGITIVGGLVMSQLLTLYTTPVVYLFFD 1009 (1025)
T ss_pred CCCHHHh--CCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6554432 333333 34566777999999999994
No 13
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.98 E-value=3.2e-28 Score=320.76 Aligned_cols=599 Identities=12% Similarity=0.129 Sum_probs=348.6
Q ss_pred CCCeEEEEcccc--hHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1296)
Q Consensus 608 ~~~~~i~~~~~~--sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~G 685 (1296)
++++++.+.++. .+++.++. -...++++++++++++++.|+++| .+++..+++.+|++++++
T Consensus 321 P~g~~~~~~~d~~~~i~~~i~~----~~~~l~~~~~lv~~vl~lfl~~~r------------~~~i~~~~ip~s~~~~~~ 384 (1040)
T PRK10503 321 PKSVKVTVLSDRTTNIRASVDD----TQFELMLAIALVVMIIYLFLRNIP------------ATIIPGVAVPLSLIGTFA 384 (1040)
T ss_pred CCCcEEEEEecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcchH------------HHHHHHhhhHHHHHHHHH
Confidence 467777765543 33333333 334566777777777777787753 277888999999999999
Q ss_pred HHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCc
Q 000762 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1296)
Q Consensus 686 l~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1296)
+|.++|+++|. ++.+...+++|+.|||++++++++++. +++.++.+++.++.++++.+++.+++|++++|+.+.+++-
T Consensus 385 ~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~tltti~~f~Pl~~~~g 463 (1040)
T PRK10503 385 VMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463 (1040)
T ss_pred HHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998 666777778899999999999988875 5677889999999999999999999999999998877654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHcc
Q 000762 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (1296)
Q Consensus 765 ---p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya 841 (1296)
..++.|++..++++++++++++|++|+++....++...++.+ +. .+..+.++.+ +++.|.
T Consensus 464 ~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~-----~~-----------~~~~~~~~~~-l~~~y~ 526 (1040)
T PRK10503 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQN-----RF-----------SRASERMFDR-VIAAYG 526 (1040)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc-----hH-----------HHHHHHHHHH-HHHHHH
Confidence 679999999999999999999999999988655432100000 00 0000111222 223344
Q ss_pred ccc---cccceeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCCCCEEE
Q 000762 842 TIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIGPPLYF 906 (1296)
Q Consensus 842 ~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~~---~~~~i~~~~~~g~pv~~ 906 (1296)
+++ +++ |..++++++++++++++....++.++-|. ..+|.++.+.+ ..+.+++.+...+.+.-
T Consensus 527 ~~l~~~l~~--~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~ 604 (1040)
T PRK10503 527 RGLAKVLNH--PWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQS 604 (1040)
T ss_pred HHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 433 233 33455566666777777777777665442 35677776543 34556666643343322
Q ss_pred EEe--cCCCCch--hhhhhh--hccccc--cCcchhHHHHHHh-ccCCCCccc-------------c---------Ccc-
Q 000762 907 VVK--NYNYSSE--SRQTNQ--LCSISQ--CDSNSLLNEISRA-SLIPQSSYI-------------A---------KPA- 954 (1296)
Q Consensus 907 Vv~--~~~~~~~--~~~~~~--ic~~~~--c~~~sl~~~l~~~-~~~~~~s~i-------------~---------~~~- 954 (1296)
+.. +.+..++ ...+.. +-.... -..+++.+++++. .+.|+.... . ++.
T Consensus 605 ~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~~~~~~~~~~v~i~l~G~d~ 684 (1040)
T PRK10503 605 LTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLTIDTQVSRTQYQFTLQATSL 684 (1040)
T ss_pred EEEEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCccccccCCCCCCCeEEEEECCCH
Confidence 221 1110000 000000 000000 0113444444443 222221100 0 000
Q ss_pred ---cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCc-ccccCCCCCCCCChhHHHhhH
Q 000762 955 ---ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT-CFHHSDLLKDRPSTIQFKEKL 1030 (1296)
Q Consensus 955 ---~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-c~~~~~~~~~~P~~~~f~~~l 1030 (1296)
..|.++..+.+....+- ... +.++. .... +-.- ..+.+....|. +.++..+.+
T Consensus 685 ~~L~~~a~~l~~~l~~~pgv--~~v-~~~~~-~~~~------------------e~~v~id~~k~~~~Gl-s~~~v~~~l 741 (1040)
T PRK10503 685 DALSTWVPKLMEKLQQLPQL--SDV-SSDWQ-DKGL------------------VAYVNVDRDSASRLGI-SMADVDNAL 741 (1040)
T ss_pred HHHHHHHHHHHHHHhcCCCe--EEE-Ecccc-CCCc------------------eEEEEECHHHHHHcCC-CHHHHHHHH
Confidence 11222222222211000 000 00000 0000 0000 00000000011 122333333
Q ss_pred HHHHhcCCCccccCCCCCCccccee----------------ccCCCCc-----------------eEE------EEEEEE
Q 000762 1031 PWFLNALPSASCAKGGHGAYTNSVD----------------LKGYENG-----------------IVQ------ASSFRT 1071 (1296)
Q Consensus 1031 ~~fl~~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~-----------------~I~------as~f~~ 1071 (1296)
..-+...+...-..++. .|.-.+. +...++. .|. +.....
T Consensus 742 ~~~~~g~~~~~~~~~~~-~~~I~v~~~~~~~~~~~~L~~l~i~~~~G~~v~L~~vA~i~~~~~~~~I~r~n~~~~v~v~~ 820 (1040)
T PRK10503 742 YNAFGQRLISTIYTQAN-QYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISF 820 (1040)
T ss_pred HHHhCCceeeEEEECCE-EEEEEEEeChhHhCCHHHHccEEEECCCCCEEEhhheEEEEEcCCcccEEeeCCeEEEEEEE
Confidence 32222211111101100 0100000 0000000 010 000111
Q ss_pred ecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 000762 1072 YHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAI 1151 (1296)
Q Consensus 1072 ~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~li 1151 (1296)
...+. .+..++.+..++..++++-+.|+++...| ..++......+....+++++++|++++.+++.|++.+++
T Consensus 821 ~~~~g---~~~~~~~~~i~~~~~~~~lP~g~~~~~~g----~~~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~~~pli 893 (1040)
T PRK10503 821 NVPDG---YSLGDAVQAIMDTEKTLNLPADITTQFQG----STLAFQSALGSTVWLIVAAVVAMYIVLGVLYESFIHPIT 893 (1040)
T ss_pred EeCCC---CCHHHHHHHHHHHHHhcCCCCCeEEEecc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence 11111 23334444444444443223344432111 113334455677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhh----ccCCCHHHHHHHHHHHhhHHHHHHHH
Q 000762 1152 ILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS----VSSGDKNQRMKEALGTMGASVFSGIT 1227 (1296)
Q Consensus 1152 i~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~----~~~~~~~erv~~Al~~~G~pVl~g~t 1227 (1296)
+++++++.+++++..|+++|++||.+|++++++++|+.||++|-++.... +++.++++++.+|.+++.+||++++
T Consensus 894 I~~tIPls~~G~~~~l~l~g~~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTt- 972 (1040)
T PRK10503 894 ILSTLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT- 972 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHH-
Confidence 99999999999999999999999999999999999999999999885432 2344889999999999999999996
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhC
Q 000762 1228 LTKLVGVIVLCFSRTEVFVVYYFQMYLA----LVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1228 lTt~~G~~vLafs~s~if~~f~f~m~~~----iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
+|+++|++||+|+.+..-+. ++.+.. .++++++.+|+++|+++.++.
T Consensus 973 ltti~gllPlal~~G~g~e~--~~pla~~ii~GL~~St~ltL~vvP~ly~~~~ 1023 (1040)
T PRK10503 973 LAALLGALPLMLSTGVGAEL--RRPLGICMVGGLIVSQVLTLFTTPVIYLLFD 1023 (1040)
T ss_pred HHHHHHHHHHHHhcCCChHH--hCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999987654442 233333 345667788999999999983
No 14
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.98 E-value=1.7e-28 Score=322.69 Aligned_cols=604 Identities=14% Similarity=0.158 Sum_probs=345.7
Q ss_pred CCCeEEEEcccch--HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1296)
Q Consensus 608 ~~~~~i~~~~~~s--l~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~G 685 (1296)
++++++.+.++.+ +++.+++ -...+..+++++++.+++.|+++|. ++.+.+++.++++++++
T Consensus 311 P~g~~~~~~~d~~~~i~~~~~~----~~~~l~~~~ilv~lvl~lfl~~~r~------------~l~~~~~IP~s~~~~~~ 374 (1017)
T PRK09579 311 PPNLKVSIAYDATLFIQASIDE----VVKTLGEAVLIVIVVVFLFLGALRS------------VLIPVVTIPLSMIGVLF 374 (1017)
T ss_pred CCCcEEEEEecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHH
Confidence 5577777665543 3333333 2334566777777777777776532 67778899999999999
Q ss_pred HHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC-
Q 000762 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 763 (1296)
Q Consensus 686 l~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~- 763 (1296)
++.++|+++|. ++.+...+++|+.|||++++++++++. +++.++.+|+.++.++.+.|+++|++|++++|+.+++.+
T Consensus 375 ~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~g 453 (1017)
T PRK09579 375 FMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTG 453 (1017)
T ss_pred HHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999997 677777788999999999999988774 578899999999999999999999999999999776543
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchH---HHHHHHH
Q 000762 764 M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGL---LARYMKE 838 (1296)
Q Consensus 764 ~--p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~---l~~~~~~ 838 (1296)
. +.++.|++..++++++++++++|+.|+++.+..++.+..+ . . ....+.. +.+++++
T Consensus 454 ~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~~~~~~~~-~------~-----------~~~~~~~~~~l~~~Y~~ 515 (1017)
T PRK09579 454 LTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRHEENPS-G------L-----------AHRLDRLFERLKQRYQR 515 (1017)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-h------h-----------hHHHHHHHHHHHHHHHH
Confidence 3 5689999999999999999999999999987654321000 0 0 0000111 2233333
Q ss_pred HccccccccceeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhh---hHHHHHHhhccCCCCEEE
Q 000762 839 VHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQ---GYFNNISEHLRIGPPLYF 906 (1296)
Q Consensus 839 ~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~---~~~~~i~~~~~~g~pv~~ 906 (1296)
..... +++ |.+++++++++++++.+....++.++-|. ..+|+++.+. +..+.+++.+...|.+.-
T Consensus 516 ~l~~~-l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~~ 592 (1017)
T PRK09579 516 ALHGT-LNT--RPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYS 592 (1017)
T ss_pred HHHHH-Hcc--hHHHHHHHHHHHHHHHHHHHhCCcCcCCccCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 22222 222 23344455555666666666666665443 4678887654 344556666544444432
Q ss_pred EEe--cCCCCchhhhhhhhccc--cccCcchhHHHHHHh-ccCCCCcc-------c-c---C-cc-------------cc
Q 000762 907 VVK--NYNYSSESRQTNQLCSI--SQCDSNSLLNEISRA-SLIPQSSY-------I-A---K-PA-------------AS 956 (1296)
Q Consensus 907 Vv~--~~~~~~~~~~~~~ic~~--~~c~~~sl~~~l~~~-~~~~~~s~-------i-~---~-~~-------------~s 956 (1296)
+.. +.+..+.....-.+-.. ..-..+++.+++.+. .+.|+... + . . |. ..
T Consensus 593 ~~~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~ 672 (1017)
T PRK09579 593 SFQINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEGLPFQFVINTANDYESLLQ 672 (1017)
T ss_pred EEEEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCCCCEEEEEECCCCHHHHHH
Confidence 221 10100000000000000 000112334444332 11222110 0 0 0 00 00
Q ss_pred hHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccc-ccCCCCCCCCChhHHHhhHHHHHh
Q 000762 957 WLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPSTIQFKEKLPWFLN 1035 (1296)
Q Consensus 957 wlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~~~~f~~~l~~fl~ 1035 (1296)
+-++....+....+. + .-+.+... .++ +-+--. +.+....|. +.++..+.+...+.
T Consensus 673 ~a~~l~~~l~~~~g~--~-~v~~~~~~--~~~-----------------el~i~vd~~ka~~~Gl-s~~~i~~~l~~~~~ 729 (1017)
T PRK09579 673 VAQRVKQRAQESGKF--A-FLDIDLAF--DKP-----------------EVVVDIDRAKAAQMGV-SMQDLGGTLATLLG 729 (1017)
T ss_pred HHHHHHHHHHcCCCc--E-EeeccccC--CCc-----------------eEEEEECHHHHHHcCC-CHHHHHHHHHHHhC
Confidence 111111111110000 0 00000000 000 000000 000000010 12233333333222
Q ss_pred cCCCccccCCCCCCccccee----------------ccCCCCceEEE---------------EE---EEEecccccchhh
Q 000762 1036 ALPSASCAKGGHGAYTNSVD----------------LKGYENGIVQA---------------SS---FRTYHTPLNRQID 1081 (1296)
Q Consensus 1036 ~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~~I~a---------------s~---f~~~~~~l~~~~d 1081 (1296)
...-..-..+|. .|.-.+. +...++..+.- .| .++.........+
T Consensus 730 G~~~~~~~~~~~-~~~I~v~~~~~~r~~~~~L~~l~i~~~~G~~VpL~~va~i~~~~~p~~I~r~n~~r~i~v~~~~~~~ 808 (1017)
T PRK09579 730 EGEINRFTIDGR-SYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQFQQLNSAIISGFPIVS 808 (1017)
T ss_pred CceeeEEEeCCE-EEEEEEEcChhHhCCHHHHhceEeECCCCCEEEhhHcEEEEEcCCCceEEEeCCeeEEEEEeeCCCC
Confidence 211000011110 1110000 00000000100 00 0000000001112
Q ss_pred HHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 000762 1082 YVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVV 1161 (1296)
Q Consensus 1082 ~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv 1161 (1296)
.-++++..++..++ .-+.|+++...|. +++...........+++++++|++++.++|+|++.++++++++++.++
T Consensus 809 ~~~~~~~i~~~~~~-~lP~g~~~~~~G~----~~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~~pliI~~~iPla~~ 883 (1017)
T PRK09579 809 MGEAIETVQQIARE-EAPEGFAFDYAGA----SRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSIC 883 (1017)
T ss_pred HHHHHHHHHHHHHh-hCCCCcEEEeech----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444444444332 1123544422221 233333347888889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhh---hcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 000762 1162 DLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 1237 (1296)
Q Consensus 1162 ~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f---~~~-~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vL 1237 (1296)
|++..+++.|.+||+++++++++.+||.|+++|.++..+ +++ +.++++++.+|.+++.+||++++ +||++|++||
T Consensus 884 G~~~~L~i~~~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTt-lTti~gllPl 962 (1017)
T PRK09579 884 GALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTT-AAMVFGMVPL 962 (1017)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999887544 323 45889999999999999999996 7999999999
Q ss_pred cccCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 000762 1238 CFSRTEVFVVYYFQMYL----ALVLLGFLHGLVFLPVVLSVFGPPSRC 1281 (1296)
Q Consensus 1238 afs~s~if~~f~f~m~~----~iv~~g~lh~Lv~LPvLLs~~gp~~~~ 1281 (1296)
+++.+...+.+ +-+. +-++++++.+|+++|+++.++.++.+.
T Consensus 963 a~~~g~g~~~~--~plA~~iigGL~~st~ltL~~iP~ly~l~~~~~~~ 1008 (1017)
T PRK09579 963 ILATGAGAVSR--FDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDAA 1008 (1017)
T ss_pred HHhcCCChHHh--CCceeeeehHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99876655432 2222 234567788899999999999876543
No 15
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.98 E-value=2.8e-28 Score=321.61 Aligned_cols=599 Identities=13% Similarity=0.118 Sum_probs=346.6
Q ss_pred CCCeEEEEcccch--HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1296)
Q Consensus 608 ~~~~~i~~~~~~s--l~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~G 685 (1296)
++++++...++.+ +++.++. -...++++++++++++++.|+++| .+++.++++.++++.+++
T Consensus 317 P~g~~~~~~~d~~~~i~~~i~~----~~~~l~~~~ilv~lvl~l~l~s~r------------~~liv~~~iP~s~~~~~~ 380 (1032)
T PRK09577 317 PPGVKYQIPYETSSFVRVSMNK----VVTTLIEAGVLVFLVMFLFMQNFR------------ATLIPTLVVPVALLGTFG 380 (1032)
T ss_pred CCCcEEEEEecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 5678777766543 3333332 334566778888888888887753 278888999999999999
Q ss_pred HHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh--cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q 000762 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (1296)
Q Consensus 686 l~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~ 763 (1296)
+|.++|+++|. ++.+...+++|+.|||++++++++++. .++.++.+|+.++.+++++|++.+++|++++|+.+++.+
T Consensus 381 ~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~tlt~~~~flPl~~~~ 459 (1032)
T PRK09577 381 VMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459 (1032)
T ss_pred HHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 688888899999999999999999885 368899999999999999999999999999999776653
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHH---HHH
Q 000762 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLAR---YMK 837 (1296)
Q Consensus 764 ---~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~---~~~ 837 (1296)
-..++.|++..++++++++++++|+.|+++....++....+.. + +....++.+ .+.
T Consensus 460 g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~--------~----------~~~~~~~~~~~~~l~ 521 (1032)
T PRK09577 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVDGDHHE--------K----------RGFFGWFNRFVARST 521 (1032)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--------c----------chHHHHHHHHHHHHH
Confidence 3458999999999999999999999999988766432100000 0 000011111 122
Q ss_pred HHccccc---cccceeeehHHHHHHHHHHHHhhhhccCCCCcc---------cccCCCCchhh---hHHHHHHhhccCCC
Q 000762 838 EVHATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ---------KIVLPRDSYLQ---GYFNNISEHLRIGP 902 (1296)
Q Consensus 838 ~~ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~---------~~~lP~dS~~~---~~~~~i~~~~~~g~ 902 (1296)
+.|.+++ ++++.+. +++.+++++++++..+.+..++-| ...+|+++.+. +..+.+++++...+
T Consensus 522 ~~Y~~~L~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~ 599 (1032)
T PRK09577 522 QRYATRVGAILKRPLRW--LVVYGALTAAAALLFTRLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHE 599 (1032)
T ss_pred HHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCC
Confidence 2333332 3332222 223333444454445556655433 23678887554 45556666665434
Q ss_pred CEEEEEe--cCCC-Cch-hhhhhhhccccc--------cCcchhHHHHHHh-ccCCCCcc-c-----------cCcc---
Q 000762 903 PLYFVVK--NYNY-SSE-SRQTNQLCSISQ--------CDSNSLLNEISRA-SLIPQSSY-I-----------AKPA--- 954 (1296)
Q Consensus 903 pv~~Vv~--~~~~-~~~-~~~~~~ic~~~~--------c~~~sl~~~l~~~-~~~~~~s~-i-----------~~~~--- 954 (1296)
.+..+.. +.+. ... ...+..+ .... -..+++.+++.+. ++.|+... . ..+.
T Consensus 600 ~v~~~~~~~g~~~~~~~~~~~~~~v-~l~~~~~r~~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~~~~~~~g~~~~i~i~ 678 (1032)
T PRK09577 600 PVAYTFALGGFNLYGEGPNGGMIFV-TLKDWKERKAARDHVQAIVARINERFAGTPNTTVFAMNSPALPDLGSTSGFDFR 678 (1032)
T ss_pred CceEEEEEeccCCCCCCcceEEEEE-EecChhhccccccCHHHHHHHHHHHhccCCCceEEeeccccccCCCCCCcEEEE
Confidence 4332221 1110 000 0000000 0000 0113344444332 12233220 0 0000
Q ss_pred ------------cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCc-ccccCCCCCCCC
Q 000762 955 ------------ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT-CFHHSDLLKDRP 1021 (1296)
Q Consensus 955 ------------~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-c~~~~~~~~~~P 1021 (1296)
..+-++....+....+- +. -..+. ..+.+ +-+- ..+......+.
T Consensus 679 i~g~~~~d~~~l~~~a~~l~~~l~~~~g~--~~-v~~~~--~~~~~-----------------~~~i~~d~~~a~~~Gl- 735 (1032)
T PRK09577 679 LQDRGGLGYAAFVAAREQLLAEGAKDPAL--TD-LMFAG--TQDAP-----------------QLKLDIDRAKASALGV- 735 (1032)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCe--EE-eeccc--cCCCc-----------------eEEEEECHHHHHHcCC-
Confidence 01122222222110000 00 00000 00000 0000 00000000011
Q ss_pred ChhHHHhhHHHHHhcCCCccccCCCCCCcccc----------------eeccCCCCc-----------------eEE---
Q 000762 1022 STIQFKEKLPWFLNALPSASCAKGGHGAYTNS----------------VDLKGYENG-----------------IVQ--- 1065 (1296)
Q Consensus 1022 ~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~----------------v~~~~~~~~-----------------~I~--- 1065 (1296)
+.++..+.+...+...+-.....|+. .|.-. +.+...++. .|.
T Consensus 736 s~~~i~~~l~~~~~g~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~l~~~~i~~~~G~~vpL~~va~i~~~~~~~~I~r~n 814 (1032)
T PRK09577 736 SMDEINTTLAVMFGSDYIGDFMHGSQ-VRRVIVQADGRHRLDPDDVKKLRVRNAQGEMVPLAAFATLHWTLGPPQLTRYN 814 (1032)
T ss_pred CHHHHHHHHHHHhcCCeeeEEecCCe-EEEEEEEeChhHhCCHHHHhhEEEECCCCCEEEhhHhEEEEEccCcceEEecC
Confidence 12233333322222211101111110 00000 000000000 010
Q ss_pred ---EEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1066 ---ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLIT 1142 (1296)
Q Consensus 1066 ---as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll 1142 (1296)
+........+. .+..++.++.+++.+++ +.|+++...|.. ++...........+++|+++|+++++++
T Consensus 815 ~~r~~~v~~~~~~~---~~~~~~~~~i~~~~~~l--P~g~~~~~~G~~----~~~~~~~~~l~~~~~~ai~li~lvl~~~ 885 (1032)
T PRK09577 815 GYPSFTINGSAAPG---HSSGEAMAAIERIAATL--PAGIGYAWSGQS----FEERLSGAQAPMLFALSVLVVFLALAAL 885 (1032)
T ss_pred CceEEEEEEEeCCC---CChHHHHHHHHHHHHhC--CCCcEEEeccHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00000111111 12334444555544443 245555433321 2222333445667889999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhh---ccCCCHHHHHHHHHHHhh
Q 000762 1143 TCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMG 1219 (1296)
Q Consensus 1143 ~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~---~~~~~~~erv~~Al~~~G 1219 (1296)
|+|++.++++++++++.++|.+..|++.|.+||.++++++++.+||.|+++|+++.... +++.+..+++.+|.+++.
T Consensus 886 F~S~~~plii~~~iPl~l~G~~~~l~l~g~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~ 965 (1032)
T PRK09577 886 YESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRL 965 (1032)
T ss_pred HHhHHhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999995544 234588999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCCc
Q 000762 1220 ASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLAL----VLLGFLHGLVFLPVVLSVFGPPSR 1280 (1296)
Q Consensus 1220 ~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~i----v~~g~lh~Lv~LPvLLs~~gp~~~ 1280 (1296)
+||++++ +|+++|++||+++.+...+.+ +-+..+ ++++++.+|+++|+++.++.+-++
T Consensus 966 RPIlmTt-ltti~gllPla~~~g~g~~~~--~pla~~iigGL~~sT~lTL~vvP~ly~l~~~~~~ 1027 (1032)
T PRK09577 966 RPIVMTS-LAFGVGVLPLAFASGAASGAQ--IAIGTGVLGGVITATVLAVFLVPLFFVVVGRLFD 1027 (1032)
T ss_pred hhHHHHH-HHHHHHHHHHHHccCCChHHh--cCchhhhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999996 799999999999977665532 322222 456677789999999999965443
No 16
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.97 E-value=7.8e-29 Score=318.96 Aligned_cols=601 Identities=15% Similarity=0.181 Sum_probs=366.6
Q ss_pred CCCeEEEE--cccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAF--SSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1296)
Q Consensus 608 ~~~~~i~~--~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~G 685 (1296)
|.++++.. .....+++.+++ -+..++.+.++++++++++|+++|. ++++.+.+.+|++.+++
T Consensus 309 P~gv~~~~~~D~t~~V~~si~~----v~~tL~~a~~lVv~Vi~lFL~~~ra------------tlI~~iaiPlsLlgtf~ 372 (1009)
T COG0841 309 PQGVDIAIPYDTTEFIKASIEE----VIKTLFEAIVLVVLVMYLFLGNLRA------------TLIPALAVPVSLLGTFA 372 (1009)
T ss_pred CCCcEEEEecCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcce------------eEEeeeechHHHHHHHH
Confidence 55666554 444444444443 4557888888888888888998753 67888999999999999
Q ss_pred HHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cccCc
Q 000762 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVG-SFIPM 764 (1296)
Q Consensus 686 l~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~-~~s~~ 764 (1296)
+|.++|+.+|. ++.....|.+|+-|||+|+++++..|..+|+++.+|..+++++++.|++.++++.+++|+-. .+..+
T Consensus 373 ~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~~G~ 451 (1009)
T COG0841 373 VMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFMGGS 451 (1009)
T ss_pred HHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999998 68888888888899999999998887433999999999999999999999999999999954 45566
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHccc
Q 000762 765 P--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT 842 (1296)
Q Consensus 765 p--~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~ 842 (1296)
. -.|+|++..+++++++++.++|+.|++-+...|+.+... ...-+. .+..+.+.+++++.+..
T Consensus 452 ~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~-~~~~~~--------------~~~~~~~~~~Y~~~l~~ 516 (1009)
T COG0841 452 TGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPK-GFFGWF--------------NRFFDRLEDRYQRGLRW 516 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-chhhhh--------------hhhhhHHHHHHHHHHHH
Confidence 5 489999999999999999999999999998877643221 000000 01122344445554444
Q ss_pred cccccceeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhh---hHHHHHHhhccC--CCCEEEEE
Q 000762 843 ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQ---GYFNNISEHLRI--GPPLYFVV 908 (1296)
Q Consensus 843 ~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~---~~~~~i~~~~~~--g~pv~~Vv 908 (1296)
.+.| |+.++++++++++.++++...++.+|-|. .-+|+++.+. +..+.+++++.. .+.+..+.
T Consensus 517 ~L~~---~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~~~~~~~~~v~~v~ 593 (1009)
T COG0841 517 VLRR---RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDWLLILEKPEVESVF 593 (1009)
T ss_pred HHhh---HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 4544 55677888888888999999999988663 3668886443 455556665322 24443332
Q ss_pred e--cCCC--Cchhhhhhhhccc--c-ccCcchhHHHHHHh-ccCCCC-cc------c---c------------Cc----c
Q 000762 909 K--NYNY--SSESRQTNQLCSI--S-QCDSNSLLNEISRA-SLIPQS-SY------I---A------------KP----A 954 (1296)
Q Consensus 909 ~--~~~~--~~~~~~~~~ic~~--~-~c~~~sl~~~l~~~-~~~~~~-s~------i---~------------~~----~ 954 (1296)
. +..- .+.......+-.. . ..+.....+++.+. .+.++. .+ + . .+ .
T Consensus 594 ~~~G~g~~~~~~~~~~~~Lk~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~d~~~l 673 (1009)
T COG0841 594 TVVGFGSGQNNAGRAFVSLKPWSERKENSAQAIIARLTKELAKIPDATVFAFTPPAVDGLGQGSGFPFQLRDRGGDLEAL 673 (1009)
T ss_pred EEeccCCCCCCcceEEEecCChhhcccccHHHHHHHHHHHhhcCCccceeccCCCccccCCCCCCccEEEEEeCCCHHHH
Confidence 2 2100 0000000000000 0 01111222222221 111110 00 0 0 00 0
Q ss_pred cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCc-ccccCCCCCCCCChhHHHhhHHHH
Q 000762 955 ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT-CFHHSDLLKDRPSTIQFKEKLPWF 1033 (1296)
Q Consensus 955 ~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-c~~~~~~~~~~P~~~~f~~~l~~f 1033 (1296)
..|.++....++..+.. .-+.++.++..+ -.. -.+++.-..|.. .++..+.|...
T Consensus 674 ~~~a~~~~~~~~~~p~~----~v~~~~~~~~p~-------------------l~i~iDr~ka~~lGvs-~~~I~~tL~~~ 729 (1009)
T COG0841 674 RQAANQLLEKANQSPLL----NVRSDLLPDTPQ-------------------LQVDIDRDKAAALGVS-LQDIAQTLQSA 729 (1009)
T ss_pred HHHHHHHHHHHhhCCCc----cccCCCCCCCce-------------------EEEEeCHHHHHHcCCC-HHHHHHHHHHH
Confidence 22444444333321100 000000000000 000 000000001111 22333333333
Q ss_pred HhcCCCccccCCCC---------CCcccc------eeccCCCCce-----------------EE------EEEEEEeccc
Q 000762 1034 LNALPSASCAKGGH---------GAYTNS------VDLKGYENGI-----------------VQ------ASSFRTYHTP 1075 (1296)
Q Consensus 1034 l~~~p~~~c~~gg~---------~~y~~~------v~~~~~~~~~-----------------I~------as~f~~~~~~ 1075 (1296)
+....-..-..+|+ ..|..+ +...+.+++. |. +........+
T Consensus 730 ~~g~~v~~~~~~~~~~~V~~~~~~~~R~~~~~l~~l~v~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~svti~~~~~~ 809 (1009)
T COG0841 730 LGGTYVNDFRDDGRVYKVVVQADAEFRSDPEDLGKLYVRSADGAMVPLSAFATIRWEYGPPRIVRYNGLPSVTISGNLAP 809 (1009)
T ss_pred hCCCeeeeEecCCcEEEEEEEcChhhcCCHHHHhceEEecCCCCEEechheEEEEEecCCCeEEeeCCceEEEEEEecCC
Confidence 32211111111111 001100 0000000111 00 0011111122
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 000762 1076 LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLV 1155 (1296)
Q Consensus 1076 l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~ 1155 (1296)
..+..+..++++ +++.+...+.|+.+-..|. .+|+..........+++|+++||+++.+++.||..+++++++
T Consensus 810 g~s~g~a~~~v~---~~~~~~~lp~g~~~~~~G~----~~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS~~~P~~Il~t 882 (1009)
T COG0841 810 GVSSGDAMAAME---KLAAELPLPSGYTYEWSGE----SEQEKEAGGQALLLFALALLVVFLVLAAQYESFSIPFIVMLT 882 (1009)
T ss_pred CCCHHHHHHHHH---HHHhccCCCCceEEEecch----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhh
Confidence 233444444433 3444432223444433332 356666777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhh---hccCCCHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000762 1156 LTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVSSGDKNQRMKEALGTMGASVFSGITLTKLV 1232 (1296)
Q Consensus 1156 i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f---~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~ 1232 (1296)
+++.++|++..+.+.|.++|+++++++++.+||++.++|-++..- ++++.++.|++.+|-+.+.|||++++ +|+++
T Consensus 883 vPla~iGa~~~L~l~g~~~~i~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTt-la~il 961 (1009)
T COG0841 883 VPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTS-LAAIL 961 (1009)
T ss_pred hhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999888433 33445899999999999999999997 79999
Q ss_pred HHHhhcccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhC
Q 000762 1233 GVIVLCFSRTEVFVVYYFQM---YLALVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1233 G~~vLafs~s~if~~f~f~m---~~~iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
|++||+++.+..-+.- ..| .++-++++.+.+|+++|+++.++.
T Consensus 962 G~iPLal~~g~Ga~~r-~~lgi~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 962 GVLPLALSTGAGAESR-QPLGIAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred hhhhhhhccccccccc-CcceEEEechhHHHHHHHHhhhhhhheeee
Confidence 9999999997644421 111 122356778889999999999875
No 17
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.97 E-value=1.6e-27 Score=314.68 Aligned_cols=600 Identities=14% Similarity=0.097 Sum_probs=343.6
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
++++++.+.++.+ +.+++..+.-...++++++++++++++.|+++| .+++.++++.+++++++|+|
T Consensus 318 p~g~~~~~~~d~~--~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r------------~~li~~~~iP~si~~t~~~~ 383 (1037)
T PRK10555 318 PHGLEYKVAYETT--SFVKASIEDVVKTLLEAIALVFLVMYLFLQNFR------------ATLIPTIAVPVVLMGTFSVL 383 (1037)
T ss_pred CCCcEEEEeeccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH------------HHHHHHhhhHHHHHHHHHHH
Confidence 5678877776543 222332222334567888888888888888753 27788899999999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHh--cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-Cc
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-PM 764 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s-~~ 764 (1296)
+++|+++|. ++.+.+.+++|+.|||++|+++++++. +++.++.+|+.++.++++++++.+++|++++|+..++. ..
T Consensus 384 ~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~stltti~~flPl~~~~G~ 462 (1037)
T PRK10555 384 YAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGT 462 (1037)
T ss_pred HHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999998 688888899999999999999999885 35889999999999999999999999999999977665 33
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHH---HHHH
Q 000762 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 839 (1296)
Q Consensus 765 --p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 839 (1296)
..++.|++..++++++++++++|+.|+++.+..++...++.. . .+....++.+. +++.
T Consensus 463 ~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~~~~~~~~~~~----------~-------~~~~~~~~~~~~~~~~~~ 525 (1037)
T PRK10555 463 TGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLKKGEHH----------G-------QKGFFGWFNRMFNRNAER 525 (1037)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc----------c-------chhHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999998766542110000 0 00000011111 2333
Q ss_pred ccccc---cccceeeehHHHHHHHHHHHHhhhhccCCCCcc---------cccCCCCchhhh---HHHHHHhhccC--CC
Q 000762 840 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ---------KIVLPRDSYLQG---YFNNISEHLRI--GP 902 (1296)
Q Consensus 840 ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~---------~~~lP~dS~~~~---~~~~i~~~~~~--g~ 902 (1296)
|.+.+ +++ |..++++++++++++++..+.++.++-+ ...+|+++.+.+ ..+.+++++.. .+
T Consensus 526 Y~~~L~~~l~~--~~~~l~~~~~~~~~~~~l~~~l~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~~ 603 (1037)
T PRK10555 526 YEKGVAKILHR--SLRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKD 603 (1037)
T ss_pred HHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCcCCcccCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 44433 233 2234444555566666666666666643 236788876544 44556665532 23
Q ss_pred CEEEEEe--c-CCCC-chhhhhhhhccccc--------cCcchhHHHHHHh-ccCCCCccc-c------C-----cc---
Q 000762 903 PLYFVVK--N-YNYS-SESRQTNQLCSISQ--------CDSNSLLNEISRA-SLIPQSSYI-A------K-----PA--- 954 (1296)
Q Consensus 903 pv~~Vv~--~-~~~~-~~~~~~~~ic~~~~--------c~~~sl~~~l~~~-~~~~~~s~i-~------~-----~~--- 954 (1296)
.+.-+.. + .... .+...+-.+ .... -..+++.+++.+. .+.|+.... . . |.
T Consensus 604 ~v~~~~~~~G~~~~~~~~~~~~~~v-~l~~~~~r~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~v~v~ 682 (1037)
T PRK10555 604 NVMSVFATVGSGPGGNGQNVARMFI-RLKDWDERDSKTGTSFAIIERATKAFNKIKEARVIASSPPAISGLGSSAGFDME 682 (1037)
T ss_pred CeEEEEEEeccCCCCCCCceEEEEE-EecCHHhCCCccCCHHHHHHHHHHHHhcCCCcEEEeeccccCCCCCCCCCEEEE
Confidence 3322221 1 0000 000000000 0000 0012334444332 112222110 0 0 00
Q ss_pred ------------cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccc-ccCCCCCCCC
Q 000762 955 ------------ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRP 1021 (1296)
Q Consensus 955 ------------~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P 1021 (1296)
..+-++..+.+....+- -....+.. ...+ +-+--. +.+....+.
T Consensus 683 l~g~~g~d~~~L~~~a~~l~~~l~~~~gv-~~v~~~~~----~~~~-----------------~l~i~id~~k~~~~Gl- 739 (1037)
T PRK10555 683 LQDHAGAGHDALMAARNQLLALAAKNPEL-TRVRHNGL----DDSP-----------------QLQIDIDQRKAQALGV- 739 (1037)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCe-EEEecCCc----CCCc-----------------eEEEEECHHHHHHcCC-
Confidence 01111222222211000 00000000 0000 000000 000000000
Q ss_pred ChhHHHhhHHHHHhcCCCccccCCCCCCccccee----------------ccCCCCceEEE---------------EE--
Q 000762 1022 STIQFKEKLPWFLNALPSASCAKGGHGAYTNSVD----------------LKGYENGIVQA---------------SS-- 1068 (1296)
Q Consensus 1022 ~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~~I~a---------------s~-- 1068 (1296)
+.++..+.+..-+...+-..-..||. .|.-.+. ....++..|.- .|
T Consensus 740 s~~~v~~~l~~~~~G~~~~~~~~~~~-~~~v~v~~~~~~r~~~~~l~~l~i~~~~G~~vpL~~vA~v~~~~~~~~i~r~n 818 (1037)
T PRK10555 740 SIDDINDTLQTAWGSSYVNDFMDRGR-VKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYN 818 (1037)
T ss_pred CHHHHHHHHHHHhcCceeeEEeeCCe-EEEEEEEeChhHhCCHHHHhheEeeCCCCCEEEhhHcEEEEEcCCccceeecC
Confidence 11222222222111100000000000 0000000 00000000000 00
Q ss_pred ----EEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000762 1069 ----FRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTC 1144 (1296)
Q Consensus 1069 ----f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~ 1144 (1296)
...... .....+..++.+..+++.++++ .|+++...|. +++...........+++++++|+++++++|+
T Consensus 819 ~~~~v~v~~~-~~~g~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~lv~~il~~~f~ 891 (1037)
T PRK10555 819 GYSAVEIVGE-AAPGVSTGTAMDIMESLVKQLP--NGFGLEWTAM----SYQERLSGAQAPALYAISLLVVFLCLAALYE 891 (1037)
T ss_pred CceEEEEEEE-cCCCCCHHHHHHHHHHHHHhCC--CCcEEEecCh----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 1111223344455555544432 3555433332 1222222234455677888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhh---ccCCCHHHHHHHHHHHhhHH
Q 000762 1145 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGAS 1221 (1296)
Q Consensus 1145 s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~---~~~~~~~erv~~Al~~~G~p 1221 (1296)
|++.+++++++|++.++|.+..|+++|.+||.++++++++++|+.|+++|-++.... .++.+.++++.+|-+++.+|
T Consensus 892 s~~~pliI~~~IPlal~G~l~~L~i~g~~l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRP 971 (1037)
T PRK10555 892 SWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRP 971 (1037)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999885443 33457899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhC
Q 000762 1222 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA----LVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1222 Vl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~----iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
|++++ +|+++|++||+++.+..-+.+ +-+.. .++++++.+|+++|+++.++.
T Consensus 972 IlmTt-ltti~gllPlal~~g~g~~~~--~pla~~ii~GL~~St~ltL~vvP~ly~~~~ 1027 (1037)
T PRK10555 972 ILMTS-LAFIFGVLPMATSTGAGSGSQ--HAVGTGVMGGMISATILAIFFVPLFFVLVR 1027 (1037)
T ss_pred HHHHH-HHHHHHHHHHHHhcCCChHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 799999999999976544432 33322 345667778999999999885
No 18
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.97 E-value=2.2e-27 Score=313.18 Aligned_cols=601 Identities=14% Similarity=0.109 Sum_probs=337.2
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
++++++.+..+.+ +.++.........++++++++++++++.|+++|. +++..+++.+++++++++|
T Consensus 318 P~g~~i~~~~d~~--~~i~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r~------------~li~~~~iP~sl~~~~~~~ 383 (1049)
T PRK15127 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRA------------TLIPTIAVPVVLLGTFAVL 383 (1049)
T ss_pred CCCceEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHHHH
Confidence 5678877765543 1122222223345677888888888888887532 7788889999999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHh--cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC--
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1296)
.++|+++|. ++.+...+++|+.|||++++++++++. +.+.++.+|+.++.++++++++.+++|++++|+.+++.+
T Consensus 384 ~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~tltt~~~f~Pl~~~~G~ 462 (1049)
T PRK15127 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1049)
T ss_pred HHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999997 677778888999999999999999874 358899999999999999999999999999999777642
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHH---HHHH
Q 000762 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 839 (1296)
Q Consensus 764 -~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 839 (1296)
-..++.|++..+.+++++++.++|+.|++..+..+.......+ +.. .....++.++ +.+.
T Consensus 463 ~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~l~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~ 526 (1049)
T PRK15127 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHG--------EGK--------KGFFGWFNRMFEKSTHH 526 (1049)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc--------cch--------hhHHHHHHHHHHHHHHH
Confidence 2357999999999999999999999999988765432110000 000 0000112221 2333
Q ss_pred ccccc---cccceeeehHHHHHHHHHHHHhhhhccCCCCcc---------cccCCCCchhhh---HHHHHHhhccC--CC
Q 000762 840 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ---------KIVLPRDSYLQG---YFNNISEHLRI--GP 902 (1296)
Q Consensus 840 ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~---------~~~lP~dS~~~~---~~~~i~~~~~~--g~ 902 (1296)
|.+++ ++++.+. +++++++++++++..+.++.++-| ...+|+++.+.+ ..+.+++++.. .+
T Consensus 527 Y~~~l~~~l~~~~~~--~~i~~~~~~~~~~l~~~~~~~f~P~~d~~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~~~~ 604 (1049)
T PRK15127 527 YTDSVGNILRSTGRY--LVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLTKEKN 604 (1049)
T ss_pred HHHHHHHHHccchHH--HHHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 44433 2332222 223344444555545566666533 236788876543 44556666532 23
Q ss_pred CEEEEEe--cCCCCchhhhhhhhc-ccc---c-----cCcchhHHHHHHh-ccCCCCc--ccc-----------------
Q 000762 903 PLYFVVK--NYNYSSESRQTNQLC-SIS---Q-----CDSNSLLNEISRA-SLIPQSS--YIA----------------- 951 (1296)
Q Consensus 903 pv~~Vv~--~~~~~~~~~~~~~ic-~~~---~-----c~~~sl~~~l~~~-~~~~~~s--~i~----------------- 951 (1296)
.+.-+.. +........+..++- ... . -..+.+.+++... .+.++.. ...
T Consensus 605 ~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~v~i~v 684 (1049)
T PRK15127 605 NVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFEL 684 (1049)
T ss_pred CeeEEEEEeccCCCCCCCceEEEEEEecCHHhCcCcccCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEEE
Confidence 2211111 100000000000000 000 0 0012223333222 1122211 000
Q ss_pred -Cc---c----cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccc-ccCCCCCCCCC
Q 000762 952 -KP---A----ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPS 1022 (1296)
Q Consensus 952 -~~---~----~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~ 1022 (1296)
.+ . ..+-++..+.+....+. .. +........ . .+-+--. +.+....+. +
T Consensus 685 ~g~~~~d~~~L~~~a~~l~~~l~~~~g~----~~--~v~~~~~~~-----~----------~~i~i~vd~~~~~~~Gl-s 742 (1049)
T PRK15127 685 IDQAGLGHEKLTQARNQLLGEAAKHPDM----LV--GVRPNGLED-----T----------PQFKIDIDQEKAQALGV-S 742 (1049)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhCCCc----ee--eeecCccCC-----C----------ceEEEEECHHHHHHcCC-C
Confidence 00 0 01222222222211000 00 000000000 0 0000000 000000011 1
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCCccccee----------------ccCCCCceEE---------------------
Q 000762 1023 TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVD----------------LKGYENGIVQ--------------------- 1065 (1296)
Q Consensus 1023 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~~I~--------------------- 1065 (1296)
..+..+.+..-.....-.....++. .|.-.+. ....++..+.
T Consensus 743 ~~~v~~~l~~~~~G~~~~~~~~~~~-~~~v~v~~~~~~~~~~~~l~~l~i~~~~G~~V~L~~vA~v~~~~~~~~i~r~ng 821 (1049)
T PRK15127 743 ISDINTTLGAAWGGSYVNDFIDRGR-VKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNG 821 (1049)
T ss_pred HHHHHHHHHHHhCCceeeEEeeCCE-EEEEEEEEChhhcCCHHHHhhEEeECCCCCEEEhhHeEEEEEccCccceeeeCC
Confidence 1222222222111110000000100 0000000 0000000000
Q ss_pred --EEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000762 1066 --ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT 1143 (1296)
Q Consensus 1066 --as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~ 1143 (1296)
+........+ ..+..++.+..+++.++++ .|+++...|. +++...........+++++++|+++++++|
T Consensus 822 ~~~v~v~~~~~~---~~~~~~~~~~v~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~ai~lv~lvL~~~f 892 (1049)
T PRK15127 822 LPSMEILGQAAP---GKSTGEAMELMEELASKLP--TGVGYDWTGM----SYQERLSGNQAPALYAISLIVVFLCLAALY 892 (1049)
T ss_pred ceEEEEEEEeCC---CCCHHHHHHHHHHHHHhCC--CCcEEEeccH----HHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111 1223344444444444432 3555433331 122222223344556778889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhc----cCCCHHHHHHHHHHHhh
Q 000762 1144 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV----SSGDKNQRMKEALGTMG 1219 (1296)
Q Consensus 1144 ~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~----~~~~~~erv~~Al~~~G 1219 (1296)
+|++.++++++++++.++++++.|+++|.+||.+|++++++++|+.||++|+++....+ ++.+..+++.+|.+.+.
T Consensus 893 ~s~~~pliI~~~IPls~~Ga~~~l~~~g~~l~~~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~ 972 (1049)
T PRK15127 893 ESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRL 972 (1049)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999955432 24588999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhC
Q 000762 1220 ASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYL----ALVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1220 ~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~----~iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
+||++++ +||++|++||+++.+..-+.+ +.+. +.++++++.+|+++|+++.++-
T Consensus 973 rPIlmTt-lTti~gllPl~l~~G~g~~~~--~plai~ii~GL~~St~ltL~~vP~ly~~~~ 1030 (1049)
T PRK15127 973 RPILMTS-LAFILGVMPLVISSGAGSGAQ--NAVGTGVMGGMVTATVLAIFFVPVFFVVVR 1030 (1049)
T ss_pred hhHHHHH-HHHHHHHHHHHhcCCCCHHHh--cCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 799999999999976544432 3222 3346677888999999999984
No 19
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.97 E-value=4.2e-28 Score=321.71 Aligned_cols=607 Identities=13% Similarity=0.101 Sum_probs=343.6
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
|+++++....+.+ +.+++..+.-...++++.+++++++++.|+++| .+++..+++.+|++.++.+|
T Consensus 321 P~g~~~~~~~d~s--~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r------------~~liv~~~iP~s~~~~~~~m 386 (1051)
T TIGR00914 321 PEGVEIVTTYDRS--QLVDAAIATVKKNLLEGALLVIVILFLFLGNIR------------AALIAATVIPLSLLITFIGM 386 (1051)
T ss_pred CCCcEEEEecCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5678876665544 333333333344567777777777777887754 27788889999999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cC-----C-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-----E-----LPLETRISNALVEVGPSITLASLSEVLAF 756 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~-----~-----~~~~~~i~~~l~~~g~si~ltslt~~~~F 756 (1296)
.++|+++|. ++.. .+++|+.|||+++++++.++. .+ + .++.+|+.++.+++++|++.|++|++++|
T Consensus 387 ~~~g~sln~-~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~stlTti~~f 463 (1051)
T TIGR00914 387 VFQGISANL-MSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQLIITLVF 463 (1051)
T ss_pred HHhCCcHHH-HHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 4433 567799999999999876542 11 3 56789999999999999999999999999
Q ss_pred HhhcccC-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHH
Q 000762 757 AVGSFIP-M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLA 833 (1296)
Q Consensus 757 ~~~~~s~-~--p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~ 833 (1296)
+.+++.+ . ..++.|++..+++++++++.++|+.|+++.+..++.+.++ + ......+.
T Consensus 464 lPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~----------~----------~~~~~~~~ 523 (1051)
T TIGR00914 464 LPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEK----------E----------NRLMRVLK 523 (1051)
T ss_pred HHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc----------c----------ChHHHHHH
Confidence 9776543 3 4689999999999999999999999999887654211000 0 00011223
Q ss_pred HHHHHHccccccccceeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCC
Q 000762 834 RYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIG 901 (1296)
Q Consensus 834 ~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~~---~~~~i~~~~~~g 901 (1296)
+++++.....+.| |+.+++++++++++++++..+++.++-|. ...|+++.+.+ ..+.+++.+..-
T Consensus 524 ~~Y~~~l~~~l~~---~~~~i~~~~~ll~~~~~~~~~l~~~f~P~~d~~~~~v~~~~~~Gts~e~t~~~~~~vE~~l~~~ 600 (1051)
T TIGR00914 524 RRYEPLLERVLAW---PAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLIKSF 600 (1051)
T ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3333332333333 33566667777888888888887776542 13466665443 445566666533
Q ss_pred CCEEEEEe--cCCC-C-c---hhhhhh--hhccccc-----cCcchhHHHHHHh-ccCCCCcc-ccCcccc---------
Q 000762 902 PPLYFVVK--NYNY-S-S---ESRQTN--QLCSISQ-----CDSNSLLNEISRA-SLIPQSSY-IAKPAAS--------- 956 (1296)
Q Consensus 902 ~pv~~Vv~--~~~~-~-~---~~~~~~--~ic~~~~-----c~~~sl~~~l~~~-~~~~~~s~-i~~~~~s--------- 956 (1296)
+.+.-+.. +... . . +...+. .+-.... -+.+.+.+++.+. .+.|+..+ +..+...
T Consensus 601 ~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~g~ 680 (1051)
T TIGR00914 601 PEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQPIQMRFNELISGV 680 (1051)
T ss_pred CCeEEEEEeecCCccCCCCCCCcceEEEEEEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccChhhhHHhhccCC
Confidence 33322221 1000 0 0 000000 0000000 0112333333332 12232211 1100000
Q ss_pred -----------hHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccc---cCCCCCCCCC
Q 000762 957 -----------WLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFH---HSDLLKDRPS 1022 (1296)
Q Consensus 957 -----------wlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~---~~~~~~~~P~ 1022 (1296)
=.+...++.+... ..... .|. -.. + ...... ..-+.-.. ......+. +
T Consensus 681 ~~~i~i~l~G~d~~~L~~~a~~v~----~~l~~---~pg-v~~----v---~~~~~~--~~~e~~i~id~~~~~~~Gl-t 742 (1051)
T TIGR00914 681 RSDVAVKVFGDDLDDLDATAEKIS----AVLKG---VPG-AAD----V---KVEQTT--GLPYLTVEIDREKAARYGL-T 742 (1051)
T ss_pred CCCeEEEEECCCHHHHHHHHHHHH----HHHhc---CCC-cee----e---eccccC--CCceEEEEECHHHHHHcCC-C
Confidence 0011000000000 00000 000 000 0 000000 00000000 00000010 1
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCCcccce----------------eccCC-----CCceEEE---------------
Q 000762 1023 TIQFKEKLPWFLNALPSASCAKGGHGAYTNSV----------------DLKGY-----ENGIVQA--------------- 1066 (1296)
Q Consensus 1023 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v----------------~~~~~-----~~~~I~a--------------- 1066 (1296)
.++..+.+.......+......|+. .|.-.+ ..... ++..|.-
T Consensus 743 ~~~v~~~l~~~~~g~~~g~~~~~~~-~~~i~vr~~~~~~~~~~~l~~l~i~~~~~~~~~g~~v~L~~vA~v~~~~~~~~i 821 (1051)
T TIGR00914 743 VGDVQDTVATAVGGRMSGETFEGDR-RFDIVIRLPESLRESPQALRQLPIPLPLSEDARKQFIPLSDVADLRVSPGPNQI 821 (1051)
T ss_pred HHHHHHHHHHHhCCceeeEEEECCE-EEeEEEEcChHHhcCHHHHhCcEeeCCCccCCCCcEEEhHHceEEEEecCcceE
Confidence 2233333333322222111111110 110000 00000 0001100
Q ss_pred EEE---E-Eecc-cccchhhHHHHHHHHHHHHHH-hhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1067 SSF---R-TYHT-PLNRQIDYVNSMRAAREFSSR-VSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCL 1140 (1296)
Q Consensus 1067 s~f---~-~~~~-~l~~~~d~i~al~~~r~ia~~-~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ 1140 (1296)
.|+ + .+.+ ... ..+..+..+++++..++ ..-+.|+++...| .+++...........+++++++|+++++
T Consensus 822 ~r~ng~~~v~v~~~~~-~~~~~~~~~~v~~~~~~~~~lP~g~~~~~~g----~~~~~~~~~~~l~~~~~~a~~li~lvL~ 896 (1051)
T TIGR00914 822 SRENGKRRVVVSANVR-GRDLGSFVDDAKKAIAEQVKLPPGYWITWGG----QFEQLQSATKRLQIVVPVTLLLIFVLLY 896 (1051)
T ss_pred EecCCeEEEEEEEEeC-CCCHHHHHHHHHHHHHhcCCCCCceEEEecc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000 011 12333334444333332 1112344432111 1244445556677778899999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhc---cCCCHHHHHHHHHHH
Q 000762 1141 ITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV---SSGDKNQRMKEALGT 1217 (1296)
Q Consensus 1141 ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~---~~~~~~erv~~Al~~ 1217 (1296)
++|+|++.++++++++++.+++++..|+++|++||.++++++++++|+.||++||++.++.+ ++.++++++.+|.++
T Consensus 897 ~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~ 976 (1051)
T TIGR00914 897 AAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALT 976 (1051)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999965543 345889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 000762 1218 MGASVFSGITLTKLVGVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1279 (1296)
Q Consensus 1218 ~G~pVl~g~tlTt~~G~~vLafs~s~if~~f--~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~ 1279 (1296)
+.+||+++. +||++|++||+++.+...+.+ +..+.++.++++++.+|+++|+++.++.++.
T Consensus 977 r~rpIl~tt-ltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~~~~~~~ 1039 (1051)
T TIGR00914 977 RVRPVLMTA-LVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRR 1039 (1051)
T ss_pred hhhhHHHHH-HHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999996 799999999999976544421 0111233467788899999999999997643
No 20
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.97 E-value=3.6e-28 Score=323.44 Aligned_cols=600 Identities=16% Similarity=0.193 Sum_probs=350.1
Q ss_pred HHHHHHHHHhhccccccCCCeEEEEccc--chHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhh
Q 000762 591 EKAFVQLAKDELLPMVQSKNLTLAFSSE--SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLL 668 (1296)
Q Consensus 591 e~~~~~~~~~~~~~~~~~~~~~i~~~~~--~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l 668 (1296)
-+++.+.+++.... -++++++....+ ..+++.++. -...++++.++++++++++||+||.
T Consensus 296 ~~~v~~~l~~~~~~--lp~~~~~~~~~d~s~~i~~~i~~----l~~~~~~g~~lv~~vl~lfl~~~r~------------ 357 (1021)
T PF00873_consen 296 SDAVKKRLEELQKT--LPEGLEITIVYDQSEYIEESINN----LISNLLIGIILVVLVLLLFLRNWRS------------ 357 (1021)
T ss_dssp HHHHHHHHHHHGGG--SSTTEEEEEEEESHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSHHH------------
T ss_pred HHHHHHHHHHHHhc--CCccceEEEEEechHHHHHHHHH----HHHHHHHHhHhhhhhhhhhhcchHH------------
Confidence 34444444443222 256766655444 334444443 3446677888887888888887642
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cC-CCCHHHHHHHHHHHhhHHHH
Q 000762 669 GLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSIT 746 (1296)
Q Consensus 669 ~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~-~~~~~~~i~~~l~~~g~si~ 746 (1296)
+++..+++.+|++.++.+|.++|+++|. ++...-.+.+|+-|||+++++++++|. .+ +.++.+|+.++.+++++|++
T Consensus 358 ~liv~~~IPisi~~t~~~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~ 436 (1021)
T PF00873_consen 358 ALIVALSIPISILGTFIFMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPIL 436 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 7778889999999999999999999997 677777777888899999999988764 45 99999999999999999999
Q ss_pred HHHHHHHHHHHhhcccC-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCC
Q 000762 747 LASLSEVLAFAVGSFIP-MP--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG 823 (1296)
Q Consensus 747 ltslt~~~~F~~~~~s~-~p--~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~ 823 (1296)
.+++|++++|+.+++.+ +. .++.|++..+++++++++.++|+.|++..+..|+.+..+...+
T Consensus 437 ~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~--------------- 501 (1021)
T PF00873_consen 437 ASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRF--------------- 501 (1021)
T ss_dssp HHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCH---------------
T ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccc---------------
Confidence 99999999999776654 33 4899999999999999999999999999877665433211000
Q ss_pred CCCCCchHHHHHHHHHccccccccc-eeeehHHHHHHHHHHHHhhhhccCCCCccc---------ccCCCCchhhh---H
Q 000762 824 IGQRKPGLLARYMKEVHATILSLWG-VKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---Y 890 (1296)
Q Consensus 824 ~~~~~~~~l~~~~~~~ya~~l~~~~-~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~lP~dS~~~~---~ 890 (1296)
........+++++.|.+++.+.. .|..++++++++++++++..++++.++-|. ..+|+++.+.+ .
T Consensus 502 --~~~~~~~~~~l~~~Y~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~ 579 (1021)
T PF00873_consen 502 --FSKFDRFFDRLQRGYRRLLRWALRHPKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAI 579 (1021)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHH
T ss_pred --cccccccccccccchhhhhhhhhhcccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHH
Confidence 00001112223334444332211 123456666777777888888887766542 36688876554 4
Q ss_pred HHHHHhhccCCCCEEEEEe--cCCCCchhhhhhh--h-cccc--------ccCcchhHHHHHHh-ccCCCCccccCcccc
Q 000762 891 FNNISEHLRIGPPLYFVVK--NYNYSSESRQTNQ--L-CSIS--------QCDSNSLLNEISRA-SLIPQSSYIAKPAAS 956 (1296)
Q Consensus 891 ~~~i~~~~~~g~pv~~Vv~--~~~~~~~~~~~~~--i-c~~~--------~c~~~sl~~~l~~~-~~~~~~s~i~~~~~s 956 (1296)
.+.+++++...+.+.-+.. +.+........+. + -... .-...++.+++.+. .+.++.....
T Consensus 580 ~~~ve~~L~~~p~V~~v~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~~----- 654 (1021)
T PF00873_consen 580 VKQVEDILKEDPEVKSVSSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVFV----- 654 (1021)
T ss_dssp HHHHHHHHHTTTTEEEEEEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEEE-----
T ss_pred HHHHHHHHHhhhhhhccceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCcceec-----
Confidence 5566677765565543333 2111000000000 0 0000 00112222222222 1111110000
Q ss_pred hHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhHHHhhHHHHHhc
Q 000762 957 WLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNA 1036 (1296)
Q Consensus 957 wlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~ 1036 (1296)
..+.. .......++... +-+ -.-.+++..+-.+..+.+...+++
T Consensus 655 --------~~~~~------~~~~~~~~g~~~------------------~i~----v~i~G~d~~~L~~~a~~v~~~l~~ 698 (1021)
T PF00873_consen 655 --------FSPPD------LRGLGSGPGSSA------------------PIQ----VEIYGDDLEELRKAAEKVKAKLAE 698 (1021)
T ss_dssp --------EEHCS------SCCCCSSSSEEE------------------EEE----EECSSSCHHHHHHHHHHHHHHHHH
T ss_pred --------ccccc------ccccccccccce------------------eee----eccCCCCHHHHHHHHHHHHHHHHh
Confidence 00000 000000000000 000 000000000011222233333333
Q ss_pred CCC-----------------------------------------------ccccCCCCCCcccceec-------------
Q 000762 1037 LPS-----------------------------------------------ASCAKGGHGAYTNSVDL------------- 1056 (1296)
Q Consensus 1037 ~p~-----------------------------------------------~~c~~gg~~~y~~~v~~------------- 1056 (1296)
.|+ ..-..|+. .|.-.+..
T Consensus 699 ~pgv~dv~~~~~~~~~el~i~~dreka~~~Gls~~~va~~l~~a~~G~~v~~~~~~~~-~~~I~vr~~~~~r~~~~~L~~ 777 (1021)
T PF00873_consen 699 IPGVTDVRDDWEDGQPELRIDPDREKAARLGLSPADVARTLRTAFSGSVVGTFREGGE-EIDIRVRLPEEDRQSLEDLEN 777 (1021)
T ss_dssp STTEEEEEESSSSBEEEEEEEE-HHHHHHTTB-HHHHHHHHHHHHS-EEEEEEEETTE-EEEEEEEE-GGGSSSGGGGCT
T ss_pred CCCcccccccccccCcceEEEecHHHHHHcCCCHHHHHHHHHHHhcccccceeeeCCe-EEEEEEecchhhccChhhhcc
Confidence 332 11111110 01000000
Q ss_pred ---cCCCCceEE--------EE--EEEEeccc----------ccchhhHHHHHHHHHHHHHHhhcccCceecccceeehh
Q 000762 1057 ---KGYENGIVQ--------AS--SFRTYHTP----------LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMY 1113 (1296)
Q Consensus 1057 ---~~~~~~~I~--------as--~f~~~~~~----------l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf 1113 (1296)
...++..+. .. .-..+|.+ .......-++.+..++..+++.-++|+.+...| .
T Consensus 778 l~i~~~~G~~VpL~~la~i~~~~~~~~I~r~n~~r~itV~a~~~~~~~~~~v~~~~~~~~~~~~lp~g~~~~~~G----~ 853 (1021)
T PF00873_consen 778 LPIPTPDGRSVPLSQLATIEETQGPSQIRRENGQRTITVSADVAGGDSLGEVSEAVKELLKELQLPPGYTIEFGG----E 853 (1021)
T ss_dssp -EEEETTSEEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESSSSHHHHHHHHHHHHHTTT-SSTTEEEEEEC----H
T ss_pred eEEEeeccccccHHHHhccccccccceEecccCceeeeeccccccCccchhHHHHHHhhhccccCCCCCcccCCc----h
Confidence 000010110 00 00011111 111111112222233333333222343332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccch
Q 000762 1114 FEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFC 1193 (1296)
Q Consensus 1114 ~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~ 1193 (1296)
+++......+....+++|+++|++++.++|+|++.++++++++++.++|++..+++.|.+||+.+++++++.+||+|.++
T Consensus 854 ~~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~~PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNa 933 (1021)
T PF00873_consen 854 AEEMQESFSSLGFALILALLLIYLILAAQFESFRQPLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNA 933 (1021)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSSTHHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHHhcceeeeEEEEeccchhhHHHHHHHhhccccccccceehHHHHHHHHHhhh
Confidence 34555666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhh---c-cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH----HHHHHHH
Q 000762 1194 VHITHAFS---V-SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL----LGFLHGL 1265 (1296)
Q Consensus 1194 iHi~~~f~---~-~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~----~g~lh~L 1265 (1296)
|-++..+. + ++.+.++++.+|.+++.+||++++ +||++|++||+++.+..-+. ++-+..+++ +|++.+|
T Consensus 934 Illvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTt-lTti~G~lPla~~~g~g~~~--~~pla~~iigGL~~stllTL 1010 (1021)
T PF00873_consen 934 ILLVDFINELRKREGMPLEEAIIEAARSRLRPILMTT-LTTILGMLPLALGIGEGAEF--WQPLAIVIIGGLLFSTLLTL 1010 (1021)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTT-STTHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-hhhhccccccccccCCCccc--cCchhhHHHHHHHHHHHHHH
Confidence 99985553 3 233688999999999999999996 79999999999998766553 244444444 4566679
Q ss_pred HHHHHHHHhh
Q 000762 1266 VFLPVVLSVF 1275 (1296)
Q Consensus 1266 v~LPvLLs~~ 1275 (1296)
+++|+++.++
T Consensus 1011 ~vvP~ly~l~ 1020 (1021)
T PF00873_consen 1011 IVVPVLYSLF 1020 (1021)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 21
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=292.59 Aligned_cols=359 Identities=17% Similarity=0.253 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEE
Q 000762 366 VQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELIL 445 (1296)
Q Consensus 366 ~~~~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii 445 (1296)
-++.++..+.+.+.+.+|||+.++++.++++++..+|..+++.++|..+ +.|+|+|++++.++++++||+... +.+
T Consensus 364 ~~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~~---~~i 439 (727)
T COG1033 364 KKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSDP---ITI 439 (727)
T ss_pred cchhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCce---EEE
Confidence 4456778899999999999999999999999999999999999999887 699999999999999999999742 333
Q ss_pred EecCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCcCCCCCccc
Q 000762 446 ATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEH 525 (1296)
Q Consensus 446 ~~~~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~~~~~~~ 525 (1296)
..+. .+..||+.++|+.++++.+++... ...+..++- ...-++.+... .++. +
T Consensus 440 ~~~~-------~d~~dp~~l~~md~l~~~l~~~~~----~V~s~~siv----------~~vk~~~~~~~--p~~~---~- 492 (727)
T COG1033 440 VLEA-------EDVRDPEVLRWMDELEEELEKGEE----HVFSASSIV----------DLVKQVNGGII--PDKS---K- 492 (727)
T ss_pred EEEC-------CCCCChHHHHHHHHHHHHHHhcce----eeeccchHH----------HHHHHHhcCCC--Ccch---h-
Confidence 3321 236899999999999999998542 122222110 00112211111 0100 0
Q ss_pred ccccccccCCCcccccccCCCCCCCccccC-ccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccc
Q 000762 526 VKYCFQHYTSTESCMSAFKGPLDPSTALGG-FSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLP 604 (1296)
Q Consensus 526 l~~~~~~~~s~~~cl~~~~~pl~~~~~lGg-~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~ 604 (1296)
++...++. | ...... ++++ .-..+.+.+.... +..+.-.+++.+.+++.
T Consensus 493 ~~~i~~~~------------~---~~~~~~~~s~~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~--- 542 (727)
T COG1033 493 IQIILEEL------------P---ESIKKRYISGD-----QLNLLGYSLGDTQ-------GELEDVGREILRDIEKE--- 542 (727)
T ss_pred HHHHHHhc------------c---hhHhhcccCCC-----ceeeeecccccch-------hHHHHHHHHHHHHHHhh---
Confidence 11111100 0 000000 1111 1111222222111 11111122333333332
Q ss_pred cccCCCeEEEEcccchHHHHHHhhhcchhH-HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHH
Q 000762 605 MVQSKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 683 (1296)
Q Consensus 605 ~~~~~~~~i~~~~~~sl~~ei~~~~~~d~~-~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s 683 (1296)
..+.+++++.+|+..+..++++....+.. ..+++++++++.+.+.+|+ +..++.+++++..++.|+
T Consensus 543 -~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs------------~~~~i~~iipi~~~v~~~ 609 (727)
T COG1033 543 -NIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRS------------PLKAIIPLIPIAIVVGWN 609 (727)
T ss_pred -cCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc------------hHHhHHHHHHHHHHHHHH
Confidence 23567899999999999999998877755 4578888888888888776 344899999999999999
Q ss_pred HHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhc-CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Q 000762 684 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI 762 (1296)
Q Consensus 684 ~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s 762 (1296)
+|+|+++|+++++ .+..+-.+++|+|+||++|+.+||++++ ++. +++|+.+|+.++|++++.+++|++.||+++.+|
T Consensus 610 ~~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~-~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S 687 (727)
T COG1033 610 FGLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGG-PKEAIETTVERTGKAILASALTTAIGFLALIFS 687 (727)
T ss_pred HHHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCC-chHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998 7899999999999999999999999975 455 999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000762 763 PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 763 ~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~ 800 (1296)
++|.+++||+.++++++++++.+++++||++.+..+|.
T Consensus 688 ~f~i~snfGll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 688 PFPIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 99999999999999999999999999999999876653
No 22
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.95 E-value=1.8e-27 Score=244.89 Aligned_cols=152 Identities=50% Similarity=0.838 Sum_probs=147.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHH
Q 000762 661 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 740 (1296)
Q Consensus 661 ~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~ 740 (1296)
+++||+++++.+++++.+|+++++|+++++|++++++..+++||++++||+||+|+++++|++.+...+.++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988889999999999999999999999998888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccc
Q 000762 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLK 812 (1296)
Q Consensus 741 ~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~ 812 (1296)
+|++++.++++++++|++++++++|++|+||+++++++++++++++|+|||+|++|.||.+.+|.|++||+|
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~~~~~~~~~~~~ 152 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLLADRLDCFCCIR 152 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 23
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.94 E-value=2.4e-27 Score=287.89 Aligned_cols=168 Identities=22% Similarity=0.391 Sum_probs=157.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhcc
Q 000762 631 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 710 (1296)
Q Consensus 631 ~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIG 710 (1296)
.|+.++.++|++||+|+++.|++++. ++||++||+.|++++++|+++++|+++++|++++.| .+++|||+|+||
T Consensus 60 ~Dv~iv~isy~vmflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaIG 133 (886)
T TIGR00920 60 SDVIVMTITRCIAVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLID 133 (886)
T ss_pred cceEEeeHHHHHHHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhhc
Confidence 47778899999999999999998765 899999999999999999999999999999999995 999999999999
Q ss_pred ccceEehHHHHH-HhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 711 VDNMCILVHAVK-RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (1296)
Q Consensus 711 vD~~~~l~~~~~-~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~ 789 (1296)
|||+|++.+. + +..+..+.++||+++++++||+|++++++++++|++|++++||++|.||+|++++|+++|++|+|||
T Consensus 134 VDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF 212 (886)
T TIGR00920 134 LSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFF 212 (886)
T ss_pred hhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999655 5 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccCc
Q 000762 790 VALIVFDFLRAEDKRV 805 (1296)
Q Consensus 790 palL~l~~~r~~~~r~ 805 (1296)
||+|++..+++..+|+
T Consensus 213 ~A~LsL~~~le~~~~h 228 (886)
T TIGR00920 213 PACLSLVLELSRSGRE 228 (886)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999998766665
No 24
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.93 E-value=2.7e-24 Score=278.02 Aligned_cols=352 Identities=13% Similarity=0.178 Sum_probs=252.3
Q ss_pred HHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEec
Q 000762 369 YMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (1296)
Q Consensus 369 ~l~~~f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~ 448 (1296)
.++++++++++++.|||+.++++++++++++.+|+.+++++.|+.+ |+|+|+++++..+.++++||+.....++++.
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~-~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~-- 443 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEK-FIPQDLPSLQARKVIESHMGGSHDFATILVK-- 443 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhh-cCCCCcHHHHHHHHHHHHhCCCCcceEEEEE--
Confidence 3567789999999999999999999999999999999999999875 5899999999999999999875322234432
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCcCCCCCcccccc
Q 000762 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (1296)
Q Consensus 449 ~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~~~~~~~l~~ 528 (1296)
++++.+++.++++.++++++++.+.. ....+ ..|+.++............ ... +
T Consensus 444 -------~~~~~~~~~l~~l~~l~~~l~~~~~v--~~v~~--------------~~si~~~~~~~~~~~~~~~--~~~-~ 497 (719)
T TIGR00921 444 -------ADDVRDPELVRFMDELSRDIKATGVA--ARVFG--------------APSIIDLVKEVEGLPAPER--SAL-E 497 (719)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHhhcccc--CcccC--------------CCCHHHHHHHhcCCCCCCc--hHH-H
Confidence 13488999999999999999875421 11111 1122222221000000000 000 0
Q ss_pred cccccCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccC
Q 000762 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (1296)
Q Consensus 529 ~~~~~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~ 608 (1296)
. ++. ...... ..++++ .+.+...+... ++..+.. +++.+.+++ ...+
T Consensus 498 ~----------lp~---~~~~~~----i~~~~~------~v~~~~~~~~~--~~~~~~~----~~~~~~~~~----~~~~ 544 (719)
T TIGR00921 498 P----------IPE---DEEGGY----ISGGQI------KVAVIQVQLKQ--GEPKVQG----RKILRDVQH----EHPP 544 (719)
T ss_pred h----------CCH---HHhcce----ecCCce------EEEEEecCCcc--hhHHHHH----HHHHHHHhc----cCCC
Confidence 0 000 000000 011111 12222221110 0111111 122222221 1235
Q ss_pred CCeEEEEcccchHHHHHHhhhcchhH-HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 609 KNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 609 ~~~~i~~~~~~sl~~ei~~~~~~d~~-~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
.++++..+|...+..++.+....+.. ..+++++++++.+.+.+|+ +..++++++++++++++++|+|
T Consensus 545 ~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs------------~~~~l~~~i~~~~~~~~~~g~~ 612 (719)
T TIGR00921 545 PGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRN------------PIKAVFPLIAIGSGILWAIGLM 612 (719)
T ss_pred CCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999888888887777764 4567777777777777765 4558889999999999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHH
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~v 767 (1296)
+++|++++. .+.++..+++|+||||++|++++|+++.+..+.++|+.++++++|++++.+++|+++||+++.++++|.+
T Consensus 613 ~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~~~~~ 691 (719)
T TIGR00921 613 GLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIM 691 (719)
T ss_pred HHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 999999997 6778888999999999999999999875447899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 768 RVFSMFAALAVLLDFLLQITAFVALIVF 795 (1296)
Q Consensus 768 r~F~i~~a~av~~~~l~~lt~~palL~l 795 (1296)
|+||+.++++++++++..++++||+|.+
T Consensus 692 ~~~g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 692 RNFGLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999863
No 25
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.93 E-value=1.1e-22 Score=257.35 Aligned_cols=452 Identities=13% Similarity=0.173 Sum_probs=298.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhcccc
Q 000762 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1296)
Q Consensus 633 ~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD 712 (1296)
+..++++++++++|+.+.++. .++..++.+++++++++|+++++|.++|+ .+.....+++|++||
T Consensus 269 ~~a~~ial~lV~i~l~~~fr~--------------~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd 333 (755)
T PRK13024 269 IIAGIIGFALIFLFMLVYYGL--------------PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVD 333 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHh
Confidence 345678888888888887642 37888899999999999999999999997 677788889999999
Q ss_pred ceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1296)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~pa 791 (1296)
|.++++++++++ +++.+.++++.++.++.+.+++.|++|++++|+.+.+...+++|.|++..++|++++++.++++.|+
T Consensus 334 ~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~ 413 (755)
T PRK13024 334 ANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRL 413 (755)
T ss_pred CcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 5788999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHH----HHHccccccccceeeehHHHHHHHHHHHHhh
Q 000762 792 LIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYM----KEVHATILSLWGVKIAVISLFVAFTLASIAL 867 (1296)
Q Consensus 792 lL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~ 867 (1296)
++.+..++. .++...+ +.... ...+++ ++..-+|+.++ ....++.++++++|+.+
T Consensus 414 l~~~~~~~~-~~~~~~~---~~~kk--------------~~~~~~~~~~~~~~~df~~~r---k~~~~iS~ili~~~l~~ 472 (755)
T PRK13024 414 LLELLVKRG-DKKPFLF---GVKKK--------------KIHNINEGVTIFDRIDFVKKR---KWFLIFSIVLVIAGIII 472 (755)
T ss_pred HHHHhhccC-ccccccc---ccchh--------------hhhccccccccCccchHHHHH---HHHHHHHHHHHHHHHHH
Confidence 999877654 2221111 11000 000000 00001222222 22334445555556555
Q ss_pred hhc--cCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhhhccccccCcchhHHHHHHhccCC
Q 000762 868 CTR--IEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 945 (1296)
Q Consensus 868 ~~~--i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~ 945 (1296)
+.. ++.|.| |.+|..+.+-.++ + .+. +++-+.+.+.
T Consensus 473 ~~~~Gln~giD---------------------F~GG~~~~v~~~~-~-~~~---------------~~vr~~l~~~---- 510 (755)
T PRK13024 473 FFIFGLNLGID---------------------FTGGTRYEIRTDQ-P-VDL---------------EQVRADLKEL---- 510 (755)
T ss_pred HhhcCcccccc---------------------cCCcEEEEEEcCC-C-CCH---------------HHHHHHHHhc----
Confidence 432 222222 5556544432221 0 000 0011111100
Q ss_pred CCccccCcccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhH
Q 000762 946 QSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQ 1025 (1296)
Q Consensus 946 ~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~ 1025 (1296)
.. .+ . ..+.
T Consensus 511 --------------------~~---------~~-----~-------------------------------------~v~~ 519 (755)
T PRK13024 511 --------------------GL---------GE-----V-------------------------------------NIVT 519 (755)
T ss_pred --------------------CC---------CC-----c-------------------------------------eEEE
Confidence 00 00 0 0000
Q ss_pred HHhhHHHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEEEEEecccccchhhHH-HHHHHHHH-HHHHhhcccCce
Q 000762 1026 FKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYV-NSMRAARE-FSSRVSDSLQME 1103 (1296)
Q Consensus 1026 f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i-~al~~~r~-ia~~~~~~~~~~ 1103 (1296)
+ |+ ++..+ +.++. ......++.. +..+..++ +.+.+.. ...+
T Consensus 520 ~------------------~~-------------~~~~~---~i~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 563 (755)
T PRK13024 520 F------------------GS-------------DNNQV---LVRTY-GILSDDEEADTEIVAKLKNALKNDKGG-TIPS 563 (755)
T ss_pred e------------------cC-------------CCcEE---EEEEc-CCCCcchhhhHHHHHHHHHHhhhhccc-ceeE
Confidence 0 00 00000 01110 0000001001 11111111 1111100 0011
Q ss_pred ecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Q 000762 1104 IFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 1183 (1296)
Q Consensus 1104 v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lv 1183 (1296)
....|+. --.++.+..+..+++|+++|++.+++-| .++.++..++++..-++.++|+|.++|+++|..++..+.
T Consensus 564 ~~~Vgp~-----~g~~~~~~~~~a~~~a~~~i~iyi~~rF-~~~~~~~aiial~~dvii~~g~~~l~~~~~~~~~iaall 637 (755)
T PRK13024 564 SETVGPT-----VGKELARNAIIAVLIALIGILLYILIRF-EWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAIL 637 (755)
T ss_pred EEEECHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcHHHHHHHH
Confidence 1111221 1235567788888899999998888887 788888888888888999999999999999999999999
Q ss_pred HHHHhhccchhhhhhhhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 000762 1184 MAVGIAVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL 1258 (1296)
Q Consensus 1184 iaiGisVDf~iHi~~~f~~~~-----~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~ 1258 (1296)
+.+|+|||+++++..+++++. ++.++.+..|+.++++..+.+. +||++++++|.+.....++.|-+.|++ -++
T Consensus 638 ~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts-~tt~~~~~~L~~~g~~~i~~fa~~l~i-Gii 715 (755)
T PRK13024 638 TIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTS-LTTLLVLLALLIFGGSSLRNFSLALLV-GLI 715 (755)
T ss_pred HHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCchHHHHHHHHHH-HHH
Confidence 999999999999998887753 3677899999999999999987 699999999999888888888655544 467
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 000762 1259 LGFLHGLVFLPVVLSVFGP 1277 (1296)
Q Consensus 1259 ~g~lh~Lv~LPvLLs~~gp 1277 (1296)
+|...++++.+.++..++.
T Consensus 716 ~g~~ssifia~~l~~~~~~ 734 (755)
T PRK13024 716 VGTYSSIFIAAPLWLDLEK 734 (755)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888877655555543
No 26
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.2e-23 Score=248.99 Aligned_cols=598 Identities=15% Similarity=0.184 Sum_probs=365.5
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
|+++++.-.=++| .-+++...+-...++-+.+++.+.+.++|+++|+ +++.++++.+|++.+|-+|
T Consensus 314 P~gVki~~~ydRs--~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~Rs------------Ali~~~~lPLS~li~f~~M 379 (1027)
T COG3696 314 PEGVKIVTTYDRS--ELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRS------------ALIVIISLPLSLLIAFIVM 379 (1027)
T ss_pred CCCcEEEEEeeHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 5677765443443 1223333333445666777777777778888653 7888899999999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHH-HHhc----CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-hhcc
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV-KRQQ----LELPLETRISNALVEVGPSITLASLSEVLAFA-VGSF 761 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~-~~~~----~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~-~~~~ 761 (1296)
.++|++.|+ ++.--..+.+|+=||.+++++++- ++.. .+..+-+.+.++.+++++|++++.+.-++.|+ ++++
T Consensus 380 ~~~gi~~Nl-MSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~lII~vvf~PIFtL 458 (1027)
T COG3696 380 NFFGISANL-MSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIFTL 458 (1027)
T ss_pred HHcCCcchh-hcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhhhhheeehhhhhee
Confidence 999999997 554444566667779999998654 4432 24455677889999999999999999999999 6777
Q ss_pred cCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHH
Q 000762 762 IPMP--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEV 839 (1296)
Q Consensus 762 s~~p--~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 839 (1296)
+.+. .++-+++.-.++++.+.++++|+.|++.++..|.. . ++++.++.||+++.
T Consensus 459 ~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~----~--------------------~e~en~l~r~~~r~ 514 (1027)
T COG3696 459 TGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGI----L--------------------PESENPLMRFLIRV 514 (1027)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C--------------------cccccHHHHHHHHH
Confidence 7665 47888999999999999999999999999887641 1 13457899999999
Q ss_pred ccccccccce-eeehHHHHHHHHHHHHhhhhccCCCCccc----------ccCCCCc--hhhhHHHHHHhhccCCCCEEE
Q 000762 840 HATILSLWGV-KIAVISLFVAFTLASIALCTRIEPGLEQK----------IVLPRDS--YLQGYFNNISEHLRIGPPLYF 906 (1296)
Q Consensus 840 ya~~l~~~~~-r~~vl~~f~~~~~~si~~~~~i~~gld~~----------~~lP~dS--~~~~~~~~i~~~~~~g~pv~~ 906 (1296)
|.|.+..-.. +..++++.++.++++.+..+++-.+|-|. ...|.-| ...+..+.+++.+..-|.+.-
T Consensus 515 Y~plL~~~l~~p~~vl~~A~~~~~~s~~l~~~lG~eF~P~l~Eg~l~~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~ 594 (1027)
T COG3696 515 YAPLLEFVLKLPKLVLLGAVLSLVASLVLLPKLGREFLPELNEGDLVYMPLTIPGVSLDEALRMLQAIERAIKKFPEVER 594 (1027)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcchhcCCCCCcCceeeeeccCCCCCHHHHHHHHHHHHHHHhcCcchhe
Confidence 9998754221 23455566667777777777766555442 2344433 223344455555544444444
Q ss_pred EEe--c-CC-CCchhh-----------hhhhhccccccCcchhHHHHHHhc-cCCCCcc-ccCcccchHHHHHHhhcccc
Q 000762 907 VVK--N-YN-YSSESR-----------QTNQLCSISQCDSNSLLNEISRAS-LIPQSSY-IAKPAASWLDDFLVWISPEA 969 (1296)
Q Consensus 907 Vv~--~-~~-~~~~~~-----------~~~~ic~~~~c~~~sl~~~l~~~~-~~~~~s~-i~~~~~swlddf~~~l~~~~ 969 (1296)
|+. + .+ -+|+.. -|+++-. .. ..+.+.+++++.- +.|...+ ...|..-=+|+...-...+.
T Consensus 595 V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~-~~-t~~~lie~l~~~~~~lpG~~~~~tqPI~~R~delltGVrsdv 672 (1027)
T COG3696 595 VFGKTGRAETATDPAPLNMIETFIELKPQEEWKD-KK-TRDELIEELRKTLEQLPGLANSFTQPIRMRIDELLTGVRSDL 672 (1027)
T ss_pred eeeccccCCCCCCCCCcccceeeEEecchhhCCC-cc-cHHHHHHHHHHHHHhCCCcccccccchhHHHHHHHhccccce
Confidence 332 1 11 111100 0111100 00 2356677777663 3665543 23333333444432222110
Q ss_pred cccccccCCC----------------CCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCC----------h
Q 000762 970 FGCCRKFTNG----------------SYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPS----------T 1023 (1296)
Q Consensus 970 ~~cc~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~----------~ 1023 (1296)
--+.+++. ......+- ..++ .. -.... +-.|+ .
T Consensus 673 --aIKvfG~Dl~~L~~la~qI~~~lk~v~Ga~dv----~~E~-----~~----g~~~l------~I~~dReaaaRyGl~v 731 (1027)
T COG3696 673 --AIKVFGDDLAELNELAEQIEEVLKTVPGAVDV----LAER-----QE----GGPYL------QIDPDREAAARYGLTV 731 (1027)
T ss_pred --EEEEeCCCHHHHHHHHHHHHHHHhcCcchhhh----eeee-----cC----CceeE------EEecCHHHHHHhCCCH
Confidence 00001100 00000000 0000 00 00000 00111 1
Q ss_pred hHHHhhHHHHHhcCCCccccCCCC---------CCccccee------ccCCCCceEE--------------------EEE
Q 000762 1024 IQFKEKLPWFLNALPSASCAKGGH---------GAYTNSVD------LKGYENGIVQ--------------------ASS 1068 (1296)
Q Consensus 1024 ~~f~~~l~~fl~~~p~~~c~~gg~---------~~y~~~v~------~~~~~~~~I~--------------------as~ 1068 (1296)
++..+.+..-+...+-..-.+|.. .+|.++++ +...++..|. ..|
T Consensus 732 ~dv~~~v~tAlgG~~v~~v~~g~~rf~vvvrlp~~~R~~~~~i~~L~i~~p~g~~ipL~~VA~I~~~~Gp~~i~rEn~~r 811 (1027)
T COG3696 732 GDVQDVVKTALGGAVVGEVFEGIRRFPVVLRLPEDYRNSIEALRNLPIPTPNGQQIPLADVADIEVVTGPNQIKRENGKR 811 (1027)
T ss_pred HHHHHHHHHHhCCceeeeeeccceecceEEEcchhhccCHHHHhcccccCCCCCEeehhHheeeEeccCcchhccccCee
Confidence 222222222222111111111100 01111111 0000000000 001
Q ss_pred EEEecccccchhhHHHHHHHHHH-HHHHhhcccCceecccceeehhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Q 000762 1069 FRTYHTPLNRQIDYVNSMRAARE-FSSRVSDSLQMEIFPYSVFYMYFEQYLDIWR---TALINLAIAIGAVFVVCLITTC 1144 (1296)
Q Consensus 1069 f~~~~~~l~~~~d~i~al~~~r~-ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~---~~~~~l~lal~~iflv~~ll~~ 1144 (1296)
......+.+ -.|.-...+++++ ++++++ .|.|+++.|-.|+++..+ .....+.+++++||+++++.|+
T Consensus 812 ~~vV~~nvr-gRDlgSfV~eaq~~i~~~V~-------LP~GY~i~~gGQFE~~qrA~~~L~vvvP~~lllIfvLl~~~f~ 883 (1027)
T COG3696 812 RSVVYANVR-GRDLGSFVEEAQKAIAEKVK-------LPPGYYIEWGGQFENLQRANKRLKVVVPVSLLLIFVLLYFAFK 883 (1027)
T ss_pred EEEEEEccc-cCcHHHHHHHHHHHHHhhCC-------CCCceEEEecchhHHHHHHhhcceehHHHHHHHHHHHHHHHHc
Confidence 111111111 2344444444433 334443 355666666677765544 3444667899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhcc---CCCHHHHHHHHHHHhhHH
Q 000762 1145 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGAS 1221 (1296)
Q Consensus 1145 s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~---~~~~~erv~~Al~~~G~p 1221 (1296)
|+..+++++..+++.++|-+-.|++.|..++.-++++.+...|+++++.+-++..++.. +.+.+|++.+.-.++-+|
T Consensus 884 sv~~alli~~~lP~Al~GGv~~l~l~G~~lSvas~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp 963 (1027)
T COG3696 884 SVGEALLIFSNLPFALIGGVIALALRGFNLSVAAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRP 963 (1027)
T ss_pred cchHhHHHHhcCcHHHhhhHHHhhhcCceEeehhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999998777543 347889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCC
Q 000762 1222 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL----LGFLHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1222 Vl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~----~g~lh~Lv~LPvLLs~~gp~ 1278 (1296)
+++++ ++..+|++|++++++..-++- +-++..++ .+.+.+|+++|++|.+++..
T Consensus 964 ~lMTa-~~~~lGlvPi~~~~g~GsEV~--~plA~vviGGl~tst~LtL~vlPaly~~~~~~ 1021 (1027)
T COG3696 964 KLMTA-LVILLGLLPILWATGAGSEVM--RPLAIVVIGGLVTSTALTLLVLPALYALFGKR 1021 (1027)
T ss_pred HHHHH-HHHHHhhhhhhhhcCCchHhh--ccchheeEcceeHHHHHHHHHHHHHHHHHHHh
Confidence 99998 588999999999999998884 55554443 55677799999999998754
No 27
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.93 E-value=8.2e-22 Score=256.71 Aligned_cols=779 Identities=15% Similarity=0.173 Sum_probs=448.1
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHhhcccccee--ecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEecCCC
Q 000762 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEV--ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDT 451 (1296)
Q Consensus 374 f~~~g~~va~~P~~vl~~~llv~~~l~~Gl~~l~i--etd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~~~~ 451 (1296)
+.++|+|+.||||+++++|+++++++..-...+.. ..+.... .|+|.++....+...+.|....+-.-++++...
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l~~~~~~~~~~~-~p~~~~s~~a~~~~~~~f~~~~~~~~~ivv~~~-- 79 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTLEALGQDKSVAL-LPDDAPSLVAMKLIGQAFNESDSSSAAIVVLEA-- 79 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccccc-CCCCchHHHHHHHHhhhccCCCCCceEEEEEcC--
Confidence 34599999999999999999999998888777643 2344434 789999888877777777664433334444421
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCcCCCCCccccccccc
Q 000762 452 THGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQ 531 (1296)
Q Consensus 452 ~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~~~~~~~l~~~~~ 531 (1296)
+.-++++--+...++.+.+++.+. +..++.|.-..| ..... .+
T Consensus 80 -----~~~l~~~d~~~~~~~v~~L~~~~~----~~~~~~d~~~~~------------------~~~~~----~~------ 122 (937)
T COG2409 80 -----DEGLTDADHALYDKLVDALRADTR----DVNVVQDFVSDP------------------LTAEL----AQ------ 122 (937)
T ss_pred -----CCCCChhHHHHHHHHHHHHhhccc----ccceecccCCCc------------------ccccc----cc------
Confidence 123455555555566666665432 111222211000 00000 00
Q ss_pred ccCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccCCCe
Q 000762 532 HYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNL 611 (1296)
Q Consensus 532 ~~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~~~~ 611 (1296)
+. .+... +. .. ......+ ..+..+. .+.. +++..+...++++
T Consensus 123 ---s~------------d~~a~-------~~--~~-~~~~~~~--------~~~~~es-~~~v----~~~v~~~~~~~~~ 164 (937)
T COG2409 123 ---SK------------DGKAA-------YA--QL-TLAGYLG--------VTQANES-VEAV----RSIVRQLPAPDGL 164 (937)
T ss_pred ---Cc------------chhhh-------hc--ce-eeeeccC--------cchhHHH-HHHH----HHHhcccCCCCce
Confidence 00 00000 00 00 0000000 0111111 1222 2222222346688
Q ss_pred EEEEcccchHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 000762 612 TLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (1296)
Q Consensus 612 ~i~~~~~~sl~~ei~~~~~~d~~~~-~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~ 690 (1296)
+.+.+|.....+.+......+.... .++..++++++.+.+|+ +..++++++++.+++..+.|+..++
T Consensus 165 ~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s------------~i~a~lpL~t~~~s~~~a~~iv~~l 232 (937)
T COG2409 165 TAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRS------------VITAFLPLITVGLSLLVAQGIVALL 232 (937)
T ss_pred EEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777777776666543 55555666666666554 4558899999999999999999865
Q ss_pred ccc----ccchhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCch
Q 000762 691 GVK----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1296)
Q Consensus 691 G~~----~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p 765 (1296)
... .+.....+...+.+|+|+||++.++.||+++ +++.+.++++.++++.+|..++.++.|.+++|+.+.+.++|
T Consensus 233 ~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~~a~~~ 312 (937)
T COG2409 233 AYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLSFARLP 312 (937)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHHhcccc
Confidence 332 3334556777789999999999999999975 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHcccccc
Q 000762 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (1296)
Q Consensus 766 ~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 845 (1296)
.++..++.++++|+++.+..+|+.||++.+.+||..... +.. +.+ .+++++ ...++.
T Consensus 313 ~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~----~~~--------------~~~----~~~w~~-~~~~v~ 369 (937)
T COG2409 313 FLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPD----PKR--------------ASE----SRFWRR-VGTLVV 369 (937)
T ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCC----cch--------------hhh----cchhhh-heeEEe
Confidence 999999999999999999999999999999998752210 000 011 222332 255677
Q ss_pred ccceeeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCC--CCEEEEEec-CCCCchhhhhhh
Q 000762 846 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN-YNYSSESRQTNQ 922 (1296)
Q Consensus 846 ~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g--~pv~~Vv~~-~~~~~~~~~~~~ 922 (1296)
+++..+ ++..++.++......+.++.+.+.+..+|.+.+.++.++.++++|+.| .|.+++++. .+..++... -.
T Consensus 370 ~~P~~~--l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~~~~-a~ 446 (937)
T COG2409 370 RRPLAI--LVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTPAAL-AD 446 (937)
T ss_pred eccHHH--HHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcChHHH-HH
Confidence 776543 333345555566667889999999999999999999999999999876 688888885 332222110 00
Q ss_pred hccccccCcchhHHHHHHhccCCCCccccCcc--------cchHHHHHH-hhccccccc-ccccCCCCCCCCCCCCC---
Q 000762 923 LCSISQCDSNSLLNEISRASLIPQSSYIAKPA--------ASWLDDFLV-WISPEAFGC-CRKFTNGSYCPPDDQPP--- 989 (1296)
Q Consensus 923 ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~--------~swlddf~~-~l~~~~~~c-c~~~~~~~~~~~~~~~~--- 989 (1296)
+ +...+.+.+.........+..|. .+|-..-+. .+....... -+........|......
T Consensus 447 i--------~~~~~~i~~v~gv~~v~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 518 (937)
T COG2409 447 I--------DKIAKAIAAVPGVRRVRAATRPNGKPLDDASISFQAGMLGDQLGQSAKFLADRLLDILSLGPADLSTSDGL 518 (937)
T ss_pred H--------HHHHHHHHhccceeeeeeeeccCCcccccccccccchhhhhhhhccccccchHHHHHHhhchhHHHHHHHH
Confidence 0 01111111111000000111111 111110000 000000000 00000000000000000
Q ss_pred -----C-C-C------CCCCCCCCCCccCCCCcccccC--CCCC----------------CCC-------------ChhH
Q 000762 990 -----C-C-P------SGQSSCGSAGVCKDCTTCFHHS--DLLK----------------DRP-------------STIQ 1025 (1296)
Q Consensus 990 -----~-~-~------~~~~~~~~~~~~~~c~~c~~~~--~~~~----------------~~P-------------~~~~ 1025 (1296)
. . . ............ .-..+. +..+ ..| ...+
T Consensus 519 ~~~~~~~~~~~~~~~~~~g~~~~v~~~~----~~~~d~~~~~~d~~~~v~~~i~~~~~~~~~~v~~s~r~~l~~~~~~~~ 594 (937)
T COG2409 519 ERLRAELQQLLDGAHDMSGITVAVGGAT----ALLRDSDADLTDFLPPVVSIIVGITFCLLIPVCRSFRSPLKALLTALQ 594 (937)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHH----HHhhhhhhhhhhhHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhhhHHH
Confidence 0 0 0 000000000000 000000 0000 000 0000
Q ss_pred -------------HH-hhHHHHHhcCCCc-ccc---------CCCCCCcc--------------------c---------
Q 000762 1026 -------------FK-EKLPWFLNALPSA-SCA---------KGGHGAYT--------------------N--------- 1052 (1296)
Q Consensus 1026 -------------f~-~~l~~fl~~~p~~-~c~---------~gg~~~y~--------------------~--------- 1052 (1296)
+. ..++.+++..|+. ... .|....|. .
T Consensus 595 lt~~~~~g~~~~~~~~g~~~~~l~~~p~p~~~~~~~l~~~~~fg~~~~~~if~v~~~~~~~~~~~~~~~~~~~~~d~~~~ 674 (937)
T COG2409 595 LTVQAATGALVVSALDGTLPQVLALLPGPLISTMPALRIAALFGLSTDYEIFLLSRQREELAAAMGQAFDTASTDDSFYL 674 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccCccccC
Confidence 00 0011222222300 000 00000111 0
Q ss_pred ---ceeccCC-------CCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhccc---CceecccceeehhHHHHHH
Q 000762 1053 ---SVDLKGY-------ENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL---QMEIFPYSVFYMYFEQYLD 1119 (1296)
Q Consensus 1053 ---~v~~~~~-------~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~---~~~v~~~s~~~vf~eqy~~ 1119 (1296)
.+....+ -...+.+.+|-.++..-....+.+.........++...... +..++-.|..-.+.+-++.
T Consensus 675 p~~~~~~~~~~~~~~~~~s~~i~~~~~~v~~~~~~~~~~~~~~~~~i~~~~da~i~~~~Lv~a~~~l~G~~a~~~d~~~~ 754 (937)
T COG2409 675 PPEAFANGDFQKGRKITASADGMAARFVVFHFGDPASTAAIGRILAIAVAADAAIKRTPLVPAKIYLGGTAAWWLDIRDW 754 (937)
T ss_pred CHHhcCChhhhHHHHHHhccCCceEEEEEEecCCcccHHHHHHHHHHHHHHHHhccCCcccCCEEEEechHHhhhhHHHH
Confidence 0000000 01123455666666543344444555555555555432221 1223334444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-----HHHHhccccchH-HHHHHHHHHHhhccch
Q 000762 1120 IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG-----VMAILKIQLNAV-SVVNLVMAVGIAVEFC 1193 (1296)
Q Consensus 1120 i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G-----~M~l~gI~Ln~v-Slv~lviaiGisVDf~ 1193 (1296)
..++........++.+|+++.+.+++.+.++.+..++.+.....+| +...+|.++... -.+..++.+.+++||-
T Consensus 755 ~~~d~~~~~i~~~~~i~ii~~i~~rs~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~ 834 (937)
T COG2409 755 LTHDLPLVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYN 834 (937)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHH
Confidence 5566677777778899999999999999999888877777655444 466777776643 5566778888899999
Q ss_pred hhhhhhhhccC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1194 VHITHAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVV 1271 (1296)
Q Consensus 1194 iHi~~~f~~~~--~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvL 1271 (1296)
+.+..|++++- +.+.+ +..|.+.+|..|...+ +.....+..|.+|+....+.-.+...+++++-+++.-.++.|++
T Consensus 835 ~~li~r~ree~~~g~~~~-ii~a~~~tg~Vit~ag-~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~ 912 (937)
T COG2409 835 ILLISRLREEIGAGLRTG-IIRAMRGTGGVITAAG-LIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAI 912 (937)
T ss_pred HHHHHHHHHHhccccchh-hhhhhccCCchHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99998888774 34455 9999999999998654 56778889999998777766555666677777888889999999
Q ss_pred HHhhCCCCccc
Q 000762 1272 LSVFGPPSRCM 1282 (1296)
Q Consensus 1272 Ls~~gp~~~~~ 1282 (1296)
..++|...+.+
T Consensus 913 ~~l~~~~~wwp 923 (937)
T COG2409 913 AALLGRWNWWP 923 (937)
T ss_pred HHHhhhhccCC
Confidence 99999877766
No 28
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.91 E-value=1.2e-20 Score=237.24 Aligned_cols=445 Identities=16% Similarity=0.196 Sum_probs=282.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhcccc
Q 000762 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1296)
Q Consensus 633 ~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD 712 (1296)
....+++++++++++++.+|. .|+...+.++++++.++|+|.++|.++|+ +...--.+.+|++||
T Consensus 375 ~~aliig~ilV~l~m~lfyr~--------------~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD 439 (855)
T PRK14726 375 LVAGLIAAILVAALMIGFYGF--------------LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVD 439 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhC
Confidence 345667777777777776542 37888899999999999999999999997 555666677899999
Q ss_pred ceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1296)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~pa 791 (1296)
+.+++.++++|+ +.+.+..+++..+.++++.+++.+++|++++|+.+.+.+..++|.|++..++|++.+++.++++.|+
T Consensus 440 ~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~ 519 (855)
T PRK14726 440 SNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRS 519 (855)
T ss_pred ceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 5678999999999999999999999999999999888887889999999999999999999999999
Q ss_pred HHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhh--h
Q 000762 792 LIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALC--T 869 (1296)
Q Consensus 792 lL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~--~ 869 (1296)
++.+..++...++.+. +.+..+..+..-+|+.+++ +..++.++++++|+.++ .
T Consensus 520 l~~~~l~~~~~~~l~~----------------------~~~~~~~~~~~~dfv~~rk---~~~~iS~ili~~si~~~~~~ 574 (855)
T PRK14726 520 LVAVWLRRRRPKHLPK----------------------GVRTGLFEGANIRFMGIRR---YVFTLSAALSLASLVLFATV 574 (855)
T ss_pred HHHHHhcccCccccch----------------------hhhhccccCCccchhhhHH---HHHHHHHHHHHHHHHHHHhc
Confidence 9987665432222110 0111111111123333321 12333344445554433 2
Q ss_pred ccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCcc
Q 000762 870 RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSY 949 (1296)
Q Consensus 870 ~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~ 949 (1296)
.++.|.| |.+|.-+.+-.+..+.. . . ++-+.+.+..
T Consensus 575 Gln~GID---------------------FtGGt~i~v~~~~~~~~-~----~-----------~vr~~l~~~~------- 610 (855)
T PRK14726 575 GLNLGID---------------------FTGGSLIEVRAKQGNAD-I----A-----------DIRARLNELN------- 610 (855)
T ss_pred CCcCceE---------------------ecCceEEEEEecCCCCC-H----H-----------HHHHHHHhcC-------
Confidence 2222222 34453333211110110 0 0 0111111000
Q ss_pred ccCcccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhHHHhh
Q 000762 950 IAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEK 1029 (1296)
Q Consensus 950 i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~ 1029 (1296)
++. +..+.+
T Consensus 611 ---------------~~~-----------------------------------------------------~~vq~~--- 619 (855)
T PRK14726 611 ---------------LGE-----------------------------------------------------VQVERF--- 619 (855)
T ss_pred ---------------CCC-----------------------------------------------------ceEEEe---
Confidence 000 000000
Q ss_pred HHHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEEEEEeccc-c-cchhhHHHHHHHHHHHHHHhhcccCc-eecc
Q 000762 1030 LPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTP-L-NRQIDYVNSMRAAREFSSRVSDSLQM-EIFP 1106 (1296)
Q Consensus 1030 l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~-l-~~~~d~i~al~~~r~ia~~~~~~~~~-~v~~ 1106 (1296)
|+ ++ .+ ..++.... . ..+++..+.++. .+.+..+. +.-.
T Consensus 620 ---------------~~-------------~~-~~---~ir~~~~~~~~~~~~~~~~~l~~------~l~~~~~~~~~~~ 661 (855)
T PRK14726 620 ---------------GS-------------PR-DA---LIRIASQDGGENAEQSAVTLVRG------ELEDDYDFRRVEV 661 (855)
T ss_pred ---------------cC-------------Cc-eE---EEEEccCCccchhhHHHHHHHHH------hhhcccccceeee
Confidence 00 00 00 00110000 0 000111111111 11111111 1111
Q ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 000762 1107 YSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAV 1186 (1296)
Q Consensus 1107 ~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviai 1186 (1296)
-|+. +- .++.+..+..+++|+++|++-+++-| .|+.++..++++..=++.++|+|+++|+++|..++..+++.+
T Consensus 662 VGp~--vG---~el~~~ai~Al~iAli~IliYI~~RF-~~~fa~~avial~hDv~i~~g~~~l~g~~ls~~~iaglLtli 735 (855)
T PRK14726 662 VGPA--VS---GELTMAATLGVLAALAAILIYIWIRF-EWQFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIV 735 (855)
T ss_pred eCcc--HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 1221 11 34457778888888888777766655 577788777888888888999999999999999999999999
Q ss_pred HhhccchhhhhhhhhccC----C-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHH
Q 000762 1187 GIAVEFCVHITHAFSVSS----G-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGF 1261 (1296)
Q Consensus 1187 GisVDf~iHi~~~f~~~~----~-~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~ 1261 (1296)
|++|+++|++..++++.. + +..+.+..++..+..-+++++ +||++|+++|++..+...+.|-+.+ +.-+++|+
T Consensus 736 GysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~Ts-lTTll~llpL~l~G~~~i~~fai~l-i~Gli~gt 813 (855)
T PRK14726 736 GYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTS-ATTLLALLALYLFGGEVIRSFTFAM-LFGVAVGT 813 (855)
T ss_pred HHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHH
Confidence 999999999998887542 1 444566666666666688886 6999999999998777777764333 34467888
Q ss_pred HHHHHHHHHHHHhhCCC
Q 000762 1262 LHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1262 lh~Lv~LPvLLs~~gp~ 1278 (1296)
+.++++-+.++.+++.+
T Consensus 814 ~sSifvAspll~~~~~~ 830 (855)
T PRK14726 814 FSSIYIAAPVLIVFKLR 830 (855)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888888777543
No 29
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.90 E-value=4.3e-21 Score=251.13 Aligned_cols=179 Identities=22% Similarity=0.226 Sum_probs=152.3
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~-~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl 686 (1296)
.++.+++++|...+..++.+..++|+..+ +++++++++++.+.+|+ +...+.+++++++++.+++|+
T Consensus 721 ~~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS------------~~~pl~~l~~v~ls~~~s~G~ 788 (910)
T TIGR00833 721 LEPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRA------------PVAPIVLIGSVALSYLWALGL 788 (910)
T ss_pred CCCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998765 56777777777777665 455788899999999999999
Q ss_pred HHhhccc-----ccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q 000762 687 FSAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF 761 (1296)
Q Consensus 687 ~~~~G~~-----~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~ 761 (1296)
+.|++.+ ++..+..+++.+++|+|+||.+|+++||+++... ..++++.++++++|++|+.+++|++++|+.+.+
T Consensus 789 ~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~-g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~ 867 (910)
T TIGR00833 789 SVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPA-GNRTGIIRALGSTGGVITAAGLVFAGTMAALAS 867 (910)
T ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhc-CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 9886544 3332334557788999999999999999997633 347899999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 000762 762 IPMPACRVFSMFAALAVLLD-FLLQITAFVALIVFDFLR 799 (1296)
Q Consensus 762 s~~p~vr~F~i~~a~av~~~-~l~~lt~~palL~l~~~r 799 (1296)
+++|.+++||+.+++||+++ +++.++++||++.+.+|+
T Consensus 868 s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 868 AQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999995 777789999999998765
No 30
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.89 E-value=2e-21 Score=228.18 Aligned_cols=194 Identities=22% Similarity=0.390 Sum_probs=165.5
Q ss_pred HHHHHHHHHhhccccccCCCeEEEEcccchHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhh
Q 000762 591 EKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLG 669 (1296)
Q Consensus 591 e~~~~~~~~~~~~~~~~~~~~~i~~~~~~sl~~ei~~~~~~d~~~~-~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~ 669 (1296)
.+++.+.+++.. ...+.+++++|...+..++.+....|...+ .++++++++.+.+.+|+ +..+
T Consensus 107 ~~~i~~~i~~~~----~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs------------~~~~ 170 (333)
T PF03176_consen 107 VKAIRDIIKEAE----KPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRS------------VRAA 170 (333)
T ss_pred HHHHHHHHHHhh----ccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHH------------HHHH
Confidence 344555555432 467899999999999999999988887754 56777777777777765 4558
Q ss_pred HHHHHHHHHHHHHHHHH----HHhhcccccchhhhHHHHHhhhccccceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHH
Q 000762 670 LSGVVLVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPS 744 (1296)
Q Consensus 670 l~~vl~v~~sv~~s~Gl----~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~s 744 (1296)
+++++++++++++++|+ +.++|.+++.+...++..+++|+|+||.+|++++|+++ .++.+.++++.++++++|++
T Consensus 171 l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~ 250 (333)
T PF03176_consen 171 LLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRA 250 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCch
Confidence 89999999999999999 45667788764445556688999999999999999986 46888999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000762 745 ITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 745 i~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~ 800 (1296)
++++++|+++||+++.++++|++|+||+.+++|+++++++.+|++||++.+.+++.
T Consensus 251 i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 251 ILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999988763
No 31
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.86 E-value=4.6e-18 Score=211.76 Aligned_cols=444 Identities=13% Similarity=0.166 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccc
Q 000762 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1296)
Q Consensus 634 ~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~ 713 (1296)
...+++++++++|+.+.++. .|+..++.+++.++.++|++.++|.++|+ .......+++|++||+
T Consensus 282 ~A~ii~~~lV~lfm~~~Y~~--------------~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~ 346 (758)
T PRK13023 282 LAALLAALVVGLFMVLSYGI--------------LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDA 346 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccC
Confidence 34567777888887776543 37888899999999999999999999997 6777778889999999
Q ss_pred eEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 714 MCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 792 (1296)
Q Consensus 714 ~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~pal 792 (1296)
.+++.++++++ +++.+.++++.++.++++.+++.|++|++++|+.+.+...+++|.|++...+|++.+++.++++.|++
T Consensus 347 ~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l 426 (758)
T PRK13023 347 HILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLL 426 (758)
T ss_pred cEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 56789999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHccccccccceeeehHHHHHHHHHHHHhhhh--c
Q 000762 793 IVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCT--R 870 (1296)
Q Consensus 793 L~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~--~ 870 (1296)
+.+..++.+.++.. + +.+..+.++..-+|+.++ ....++.++++++++..+. .
T Consensus 427 ~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~dF~~~r---~~~~~iS~il~~~~~~~~~~~G 481 (758)
T PRK13023 427 IAQWVRTAKPKEVP---------------------K-RRLKLVPTVTHIPFMRLQ---FVTLGISVLACAIVVALFVNIG 481 (758)
T ss_pred HHHHHhhcCccccc---------------------h-hhhhhcccCCCcchhhHH---HHHHHHHHHHHHHHHHHHHhcC
Confidence 98876653222110 0 000000111112233222 1223334444444444332 1
Q ss_pred cCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhhhccccccCcchhHHHHHHhccCCCCccc
Q 000762 871 IEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYI 950 (1296)
Q Consensus 871 i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~~~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i 950 (1296)
++.|. .|.+|.-+.+-.+..+.. . +++-+.+++.
T Consensus 482 ln~GI---------------------DFtGGt~i~v~~~~~~~~-~---------------~~vr~~l~~~--------- 515 (758)
T PRK13023 482 FNYGI---------------------DFRGGSMVELQARNGDAN-L---------------EDINERLAEL--------- 515 (758)
T ss_pred CCCCe---------------------EecCceEEEEEecCCCCC-H---------------HHHHHHHHhc---------
Confidence 22221 134443333222110100 0 0011111100
Q ss_pred cCcccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCChhHHHhhH
Q 000762 951 AKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKL 1030 (1296)
Q Consensus 951 ~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l 1030 (1296)
.- .+ ...+.+
T Consensus 516 ---------------~~---------~~------------------------------------------~~vq~~---- 525 (758)
T PRK13023 516 ---------------NI---------DS------------------------------------------ARVLPA---- 525 (758)
T ss_pred ---------------CC---------CC------------------------------------------ceEEEe----
Confidence 00 00 000000
Q ss_pred HHHHhcCCCccccCCCCCCcccceeccCCCCceEEEEEEEEecccccchhhHHHHHHHHHHHHHHhhcccCc-eecccce
Q 000762 1031 PWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-EIFPYSV 1109 (1296)
Q Consensus 1031 ~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~-~v~~~s~ 1109 (1296)
|+ .++..+ +++........+++..++++ +.+....+. +...-|+
T Consensus 526 --------------~~------------~~~~~i---~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~VGp 570 (758)
T PRK13023 526 --------------KS------------PRSALV---IIGSQEVGDDAEQTVAVKLR------GEFEQDYSFQRVDVVGP 570 (758)
T ss_pred --------------cC------------CCceEE---EEeCCCCcchHHHHHHHHHH------hhcCCCcceeEEEEECc
Confidence 00 000000 01100000000111111111 111111111 1111121
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Q 000762 1110 FYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIA 1189 (1296)
Q Consensus 1110 ~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGis 1189 (1296)
. -=.++.+..+..+++|+++|++-+++-|+ +..++..++.+.-=++-++|++.++|+++|...+..+...+|.|
T Consensus 571 ~-----vg~el~~~ai~Av~ia~i~IliYI~~RF~-~~fav~AviALiHDvlivlg~fsl~~~e~~l~~IAAlLTiiGYS 644 (758)
T PRK13023 571 T-----VSEQLSRAGVLAVILSLIGIFIYVWFRFR-WQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYS 644 (758)
T ss_pred c-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhCceecHHHHHHHHHHHhhc
Confidence 1 11355678888888998888887777764 66676666666666778899999999999999999999999999
Q ss_pred ccchhhhhhhhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 000762 1190 VEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHG 1264 (1296)
Q Consensus 1190 VDf~iHi~~~f~~~~-----~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~ 1264 (1296)
++.+|-+-.|.++.. ++..+-+..++.++..-.+.++ +||++.+++|.+-....++.|-+.|+++ +++|...+
T Consensus 645 iNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS-~TTll~~l~L~ifGg~~i~~Fal~lliG-iv~GtySS 722 (758)
T PRK13023 645 LNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTS-FVTFLAHVPLYAFGGSEIRMFALALSVG-IIVASYSS 722 (758)
T ss_pred ccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHH-HHHHHHhH
Confidence 999999887766542 2466788888887666555565 5889998888776666778776666544 67888889
Q ss_pred HHHHHHHHHhhC
Q 000762 1265 LVFLPVVLSVFG 1276 (1296)
Q Consensus 1265 Lv~LPvLLs~~g 1276 (1296)
+++-+.++..++
T Consensus 723 IfIAspl~~~~~ 734 (758)
T PRK13023 723 IFIAAPLLVQFG 734 (758)
T ss_pred HHHHHHHHHHHh
Confidence 888777776775
No 32
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.81 E-value=7.1e-19 Score=206.63 Aligned_cols=200 Identities=18% Similarity=0.298 Sum_probs=173.5
Q ss_pred chhhHHHHHHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 000762 1078 RQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 1157 (1296)
Q Consensus 1078 ~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~ 1157 (1296)
...+..+.+++.++..++.....|.++...|...+..|....+.++.....+++++++++++++.++|++.+++.++++.
T Consensus 99 ~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~~~~l~~l~~~~ 178 (333)
T PF03176_consen 99 GSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSVRAALLPLLPVL 178 (333)
T ss_pred chhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33445566777777777776567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----HHHhccccchHH-HHHHHHHHHhhccchhhhhhhhhccC---CCHHHHHHHHHHHhhHHHHHHHHHH
Q 000762 1158 MIVVDLMGV----MAILKIQLNAVS-VVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGASVFSGITLT 1229 (1296)
Q Consensus 1158 ~iiv~v~G~----M~l~gI~Ln~vS-lv~lviaiGisVDf~iHi~~~f~~~~---~~~~erv~~Al~~~G~pVl~g~tlT 1229 (1296)
+.++..+|+ |.++|+++|.++ .+..++.+|+++||++|+.++|+++. .+.++++++|++++|+||+.++ +|
T Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~-lt 257 (333)
T PF03176_consen 179 LSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSA-LT 257 (333)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHH-HH
Confidence 999888888 567788898654 45667899999999999999998764 4778999999999999999986 79
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 000762 1230 KLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1279 (1296)
Q Consensus 1230 t~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~ 1279 (1296)
+++||..|++++.+.++.| +.+..+.++++++.+++++|+++.++|+..
T Consensus 258 t~~gf~~L~~s~~~~~~~~-G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 258 TAIGFGSLLFSPFPPLRQF-GLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999999999999999987 455556678899999999999999999886
No 33
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.79 E-value=1.1e-15 Score=192.57 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceE
Q 000762 636 IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715 (1296)
Q Consensus 636 ~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~ 715 (1296)
.+++++++++|+++.++- .++...+.+++.++.++|++.++|.++|+ .......+++|++||+.+
T Consensus 915 ~lIglaLVlIFMlL~YRf--------------~GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnI 979 (1403)
T PRK12911 915 VCLGLAVLIVLMSVYYRF--------------GGVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANV 979 (1403)
T ss_pred HHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCE
Confidence 345555555666555431 16777788888999999999999999997 566777788999999999
Q ss_pred ehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 716 ILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794 (1296)
Q Consensus 716 ~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~ 794 (1296)
++.++++++ +.+.+..+++..+..++..+++.|++|++++++.+.+.....++.|++..++|++++++.++++.|+++.
T Consensus 980 VIfERIREELr~Gksl~eAI~~G~~~afs~ILdTnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~ 1059 (1403)
T PRK12911 980 LVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFM 1059 (1403)
T ss_pred EEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 5688999999999999999999999999999998877666779999999999999999999999999998
Q ss_pred Hhhhhc
Q 000762 795 FDFLRA 800 (1296)
Q Consensus 795 l~~~r~ 800 (1296)
+..++.
T Consensus 1060 l~l~~~ 1065 (1403)
T PRK12911 1060 IWMNKT 1065 (1403)
T ss_pred HHHhcC
Confidence 876553
No 34
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.79 E-value=4.2e-17 Score=213.82 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHhhc--ccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 000762 1083 VNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 1160 (1296)
Q Consensus 1083 i~al~~~r~ia~~~~~--~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~ii 1160 (1296)
.+++++.|+..++++. ++|+++...|......+....+.++....+.+++++++++++++++|++.++++++++++.+
T Consensus 228 ~~~~~~i~~~~~~~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~~~l~~l~~i~~s~ 307 (862)
T TIGR03480 228 EKAINAIRAAAKDLRLDEDHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPRLVFAVLVTLIVGL 307 (862)
T ss_pred HHHHHHHHHHHHhcccCCCCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566667777765432 35788877777666667778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 000762 1161 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 1237 (1296)
Q Consensus 1161 v~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vL 1237 (1296)
++.+|+|+++|.++|.+|++..++.+|++|||++|++++|+++ ++++++++.+|++++|+|++.++ +||++||+.|
T Consensus 308 ~~~~~~~~l~~~~ln~~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~-lTt~~gf~~l 386 (862)
T TIGR03480 308 ILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAA-LATAAGFFAF 386 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999988865 34788999999999999999997 7999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000762 1238 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1238 afs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~ 1278 (1296)
.++..+.++.+ +.+....++++++.+++++|+++++++|+
T Consensus 387 ~~~~~~~~~~l-g~~~~~gv~~s~l~~l~llP~l~~~~~~~ 426 (862)
T TIGR03480 387 LPTDYKGVSEL-GIIAGTGMFIALFVTLTVLPALLRLLRPP 426 (862)
T ss_pred HHcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99998888776 33334456778899999999999999654
No 35
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.74 E-value=2.1e-15 Score=196.51 Aligned_cols=373 Identities=17% Similarity=0.163 Sum_probs=234.9
Q ss_pred HHHHHHhchhhhccchHH--HHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEec
Q 000762 371 SNFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (1296)
Q Consensus 371 ~~~f~~~g~~va~~P~~v--l~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~ 448 (1296)
+.+..+|+.|+.+.+..+ +++.++..++..+|..+++..-||.++ +|+||+..+-.+..|+.|.+.+..-.+++..
T Consensus 422 ~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~- 499 (798)
T PF02460_consen 422 RFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVVVNN- 499 (798)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEEecC-
Confidence 344556788998886544 455556666778999999999999876 8999999999888888887655322333321
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCcCCCCCcccccc
Q 000762 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (1296)
Q Consensus 449 ~~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~~~~~~~~~l~~ 528 (1296)
.+|.-+++..+++.++.+++++.+.....+... .=+.+-.+|.+.......+++..+....
T Consensus 500 -------~~d~~~~~~~~~l~~lv~~fe~~~~~~~~~~t~------------~WL~~y~~~l~~~~~~~~~~~~~~~~~~ 560 (798)
T PF02460_consen 500 -------PPDYSDPENQDRLNSLVQEFENSPYSIGNNSTS------------FWLRDYLNFLNSINSSFQDDNDKEFFYN 560 (798)
T ss_pred -------CCCccchHHHHHHHHHHHHHhccccccccccch------------hhHHHHHHHHhhccccccccccceeeec
Confidence 246888999999999999998865321111000 0011122222210111111000000000
Q ss_pred cccccCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhccccccC
Q 000762 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (1296)
Q Consensus 529 ~~~~~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~~ 608 (1296)
..+.... .+.+ .+......+. ...++-..-++..++...++..+ .+...++.+++.+..+++
T Consensus 561 ~l~~FL~----~~~~-~~~~~di~~~-~~~~~~~~I~a~rf~~~~~~~~~-----~~~~~~~~~~~R~i~~~~------- 622 (798)
T PF02460_consen 561 LLPEFLN----SPEY-RHYSNDIKFD-DSDNDTTQISAFRFTTQLKNLSD-----WSDRIEAMKDWRQIADKY------- 622 (798)
T ss_pred cchhhhc----cccc-cccccccccc-cccCCccceeeEEEEEEccCCCC-----HHHHHHHHHHHHHhhhcc-------
Confidence 0000000 0000 0111111111 00112223345555555544322 111122223333332322
Q ss_pred CCeEEEEcccc-hHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 609 KNLTLAFSSES-SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 609 ~~~~i~~~~~~-sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
+.+++...... ...|.+......-+..++++.+.|++...+.+.+. ..+++.+++++.-.+..+|+|
T Consensus 623 ~~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~------------~~~~~~~~~i~~i~~~v~G~m 690 (798)
T PF02460_consen 623 SDFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNP------------RSSLIVTLSILSIDVGVIGFM 690 (798)
T ss_pred eecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccc------------hhHHHHHHHHHHHHHHHHHhh
Confidence 22444333332 33344443333344557778888887766666553 336666677777777888999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHH
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~v 767 (1296)
+++|+++++ ++.+...+.+|++||++.|+.++|.+.... ++++|+.+|++++|.|++-++++|++|.+.+++++...+
T Consensus 691 ~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~ 768 (798)
T PF02460_consen 691 SLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIF 768 (798)
T ss_pred hccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999998 688888899999999999999999876543 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000762 768 RVFSMFAALAVLLDFLLQITAFVALIVFD 796 (1296)
Q Consensus 768 r~F~i~~a~av~~~~l~~lt~~palL~l~ 796 (1296)
|.|.-...+.+++.++-.+.++|++|++.
T Consensus 769 ~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 769 RVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999864
No 36
>COG4258 Predicted exporter [General function prediction only]
Probab=99.73 E-value=1.2e-14 Score=168.11 Aligned_cols=253 Identities=17% Similarity=0.111 Sum_probs=161.5
Q ss_pred eEEEEcccchHHHHHHhhhcchhHHHH-HHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHh
Q 000762 611 LTLAFSSESSIEEELKRESTADAITIV-ISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689 (1296)
Q Consensus 611 ~~i~~~~~~sl~~ei~~~~~~d~~~~~-is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~ 689 (1296)
.++.-+|.....++....++.|+.++. .+.+.+++.+.+.+|++|. -++|++++..+.++++--..+
T Consensus 236 ~ql~~tGp~fyA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~Rv------------llLgvls~gig~laglvAt~l 303 (788)
T COG4258 236 AQLLSTGPVFYADYARQQAKQDISTLGVASLLGIILLLLAVFRSLRV------------LLLGVLSIGIGALAGLVATLL 303 (788)
T ss_pred hhhhhcCCeeeeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchhH------------HHHHHHHhhHHHHHHHHHHHH
Confidence 444445555556788888888988774 4556666667777777652 344555555555555443333
Q ss_pred hcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHH
Q 000762 690 IGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRV 769 (1296)
Q Consensus 690 ~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~ 769 (1296)
.=-++.. ++.++-+-++|+.+||.|++..+.++--...|+- +..+|+-|++++.-+|++++|.++.++++|.+|+
T Consensus 304 aFg~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~----rsaaev~paL~lallTtvlayatmlfs~fpgLrQ 378 (788)
T COG4258 304 AFGELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPW----RSAAEVRPALLLALLTTVLAYATMLFSPFPGLRQ 378 (788)
T ss_pred HHhhHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChh----HHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 3234555 5778888899999999999876554422123333 3378899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCchHHHHHHHHHccccccccce
Q 000762 770 FSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGV 849 (1296)
Q Consensus 770 F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~ 849 (1296)
+++|+.+|+..+++....+.|.+. ++. ..|. -.....+.||... +=..++.
T Consensus 379 La~faivGL~aAaltvrfllP~L~----~~a-~~rp--------------------v~~~arlarwlaa----~~~~~w~ 429 (788)
T COG4258 379 LAIFAIVGLLAAALTVRFLLPWLC----RGA-PVRP--------------------VPAMARLARWLAA----WRRNKWL 429 (788)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc----CCC-CCCC--------------------chHHHHHHHHHHh----cccccch
Confidence 999999999999999999999874 111 0000 0111223333332 1111111
Q ss_pred eeehHHHHHHHHHHHHhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCC-EEEEEec
Q 000762 850 KIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPP-LYFVVKN 910 (1296)
Q Consensus 850 r~~vl~~f~~~~~~si~~~~~i~~gld~~~~lP~dS~~~~~~~~i~~~~~~g~p-v~~Vv~~ 910 (1296)
...+.+.+.+......|....+.+.|...+-|.+-....--..+....+...- -+||+++
T Consensus 430 -la~llVal~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~Gapdvry~fvv~g 490 (788)
T COG4258 430 -LAGLLVALALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALTGAPDVRYWFVVYG 490 (788)
T ss_pred -hhhHHHHHHHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 11222222333333567777888888888888777666655666666654322 3456665
No 37
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.60 E-value=3.8e-14 Score=187.57 Aligned_cols=157 Identities=14% Similarity=0.198 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
....+....++.+++++++++++++++++.++++++++++.+++++++|+++|++||.+|++++++++|+.||++||++.
T Consensus 328 ~~~~~~~~~l~~~~ilv~lvl~lfl~~~r~~l~~~~~IP~s~~~~~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e 407 (1017)
T PRK09579 328 ASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVE 407 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHH
Confidence 44567778888999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hh---hccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1199 AF---SVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1199 ~f---~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s---~if~~f~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
++ +++++++.+++.+|.+++++||+++. +||++||+|++|..+ ++++.+ .......++++++.+++++|+++
T Consensus 408 ~i~~~~~~G~~~~~A~~~~~~~~~~pil~st-lTti~~f~Pl~f~~g~~g~~~~~l-~~~v~~~l~~S~l~al~l~P~l~ 485 (1017)
T PRK09579 408 NIHRHIEEGKSPFDAALEGAREIAMPVVSMT-ITLAAVYAPIGFLTGLTGALFKEF-ALTLAGAVIISGIVALTLSPMMC 485 (1017)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 33445899999999999999999885 799999999999874 333333 22334456788899999999999
Q ss_pred HhhCC
Q 000762 1273 SVFGP 1277 (1296)
Q Consensus 1273 s~~gp 1277 (1296)
+++-+
T Consensus 486 ~~~~~ 490 (1017)
T PRK09579 486 ALLLR 490 (1017)
T ss_pred HHhcc
Confidence 98854
No 38
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.59 E-value=6.7e-13 Score=172.55 Aligned_cols=178 Identities=17% Similarity=0.062 Sum_probs=144.2
Q ss_pred CCeEEEEcccchHHHH-HHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 609 KNLTLAFSSESSIEEE-LKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 609 ~~~~i~~~~~~sl~~e-i~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
.+++++..|...+-.| ........+..+.++.+.||+++++.+++ ++.+++.++++++.++..+|+|
T Consensus 943 ~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~------------~~~a~iv~l~v~~i~v~v~G~M 1010 (1145)
T TIGR00918 943 FGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLN------------PWTAGLIVLVLALMTVELFGMM 1010 (1145)
T ss_pred cCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3466655554444222 22222222334566667787777777765 3346777888899999999999
Q ss_pred HhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCch-H
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP-A 766 (1296)
Q Consensus 688 ~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p-~ 766 (1296)
+++|+++|. ++.+...+.+|+|||++.|+.++|... ..++++|+.+||+++|.|++.+++|+++|.++++++++. .
T Consensus 1011 ~lwgI~Lna-VS~vnLimsIGisVefsaHI~~~F~~~--~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~~~ 1087 (1145)
T TIGR00918 1011 GLLGIKLSA-IPVVILIASVGIGVEFTVHIALGFLTA--IGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFI 1087 (1145)
T ss_pred HHHcCCccH-HHHHHHHHHHhhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 999999997 688888899999999999999999854 335799999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 000762 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (1296)
Q Consensus 767 vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~ 801 (1296)
++.|+...++.|+++++-.++++|.+|++.+.+.+
T Consensus 1088 ~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp~~~ 1122 (1145)
T TIGR00918 1088 VRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGPEPE 1122 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 89999999999999999999999999999887654
No 39
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.58 E-value=6.6e-14 Score=185.97 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.....+....+.++++++++++++++++++.++++++++++.+++++++|+++|++||.+|+..+++++|+.||++||+.
T Consensus 328 ~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r~~li~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv~ 407 (1025)
T PRK10614 328 RASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVL 407 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhheeecCcEEEE
Confidence 34556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---hhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 ---HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVV 1271 (1296)
Q Consensus 1198 ---~~f~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s---~if~~f~f~m~~~iv~~g~lh~Lv~LPvL 1271 (1296)
+++++++.++.+++.++.++++.|++.+. +|+++||+|++|..+ ++++.+ .......++++++.+++++|++
T Consensus 408 e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~st-ltti~~f~Pl~~~~g~~g~~~~~~-~~~~~~~l~~S~~~al~~~P~l 485 (1025)
T PRK10614 408 ENISRHLEAGMKPLQAALQGVREVGFTVLSMS-LSLVAVFLPLLLMGGLPGRLFREF-AVTLSVAIGISLLVSLTLTPMM 485 (1025)
T ss_pred eHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556889999999999999999974 799999999999886 345544 2333445678889999999999
Q ss_pred HHhhCCC
Q 000762 1272 LSVFGPP 1278 (1296)
Q Consensus 1272 Ls~~gp~ 1278 (1296)
++++.++
T Consensus 486 ~~~~~~~ 492 (1025)
T PRK10614 486 CAWLLKS 492 (1025)
T ss_pred HHHhccC
Confidence 9998643
No 40
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.57 E-value=7.3e-14 Score=185.44 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
....+...++.+++++++++++++++|++.++++++++++.+++.+++|+++|++||.+|++++++++|+.||++||++.
T Consensus 334 ~~i~~~~~~l~~~~ilv~lvl~l~l~s~r~~liv~~~iP~s~~~~~~~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie 413 (1032)
T PRK09577 334 VSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVE 413 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHheeeEecCcEEEeh
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1199 AFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1199 ~f~~----~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f--~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
++.+ .++++.+++.+|.+++++||+.+ |+|++++|+|++|..+...+.| +.......++++++.+++++|+++
T Consensus 414 ~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~-tlt~~~~flPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~ 492 (1032)
T PRK09577 414 NVERLMVEEGLSPYDATVKAMKQISGAIVGI-TVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALC 492 (1032)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 23488999999999999999977 5799999999999885444322 122233456778899999999999
Q ss_pred HhhCC
Q 000762 1273 SVFGP 1277 (1296)
Q Consensus 1273 s~~gp 1277 (1296)
..+.+
T Consensus 493 ~~~~~ 497 (1032)
T PRK09577 493 ATLLK 497 (1032)
T ss_pred HHhcC
Confidence 99864
No 41
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.57 E-value=2.3e-12 Score=163.35 Aligned_cols=373 Identities=16% Similarity=0.183 Sum_probs=239.4
Q ss_pred HHHHHhchhhhccchHH--HHHHHHHHHHHhhccccceeecCCCccccCCCChhHHHHHHhhhccCCCCceeEEEEEecC
Q 000762 372 NFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449 (1296)
Q Consensus 372 ~~f~~~g~~va~~P~~v--l~~~llv~~~l~~Gl~~l~ietd~~~lw~p~~s~~~~e~~~f~~~Fg~~~r~eqvii~~~~ 449 (1296)
.+.++|+.|+.+.+..+ +++.++-.+++.+|..+++..-||.++ ++.||+..+-.+..++.|-+.+..-++++.+
T Consensus 456 ~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl-~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~n-- 532 (868)
T KOG1934|consen 456 FFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKL-LPEDSPLVKSLRLQEKYFWEYGQQVAVFVNN-- 532 (868)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHc-ccccCcchHHHHHHHHHhhccCceEEEEEcC--
Confidence 55556777877655443 344445556788999999999999999 8999999999888888886654333444432
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhhccccccCcccccccccccccCCCccccchhhhhccCCCCc--CCCCCccccc
Q 000762 450 DTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNF--DDFGGVEHVK 527 (1296)
Q Consensus 450 ~~~~~~~~~vl~~~~L~~~~~l~~~i~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~~~~~~~~~~--~~~~~~~~l~ 527 (1296)
-+|+-+++.++++.++.++++..+... |+..| .+-+.+-.+|........ .+..+..+..
T Consensus 533 ------p~dl~~~~~~~~~~~~~~~fE~~~~~~-G~~sT-----------~~wlr~y~~~~~~~~~~~~~~~~~~~~~~~ 594 (868)
T KOG1934|consen 533 ------PPDLSNPENRDNLNELVSEFESTPYSM-GREST-----------KFWLREYLNFLFEKNAELEDNDDEFYDHLY 594 (868)
T ss_pred ------CccCCCHHHHHHHHHHHHHHhcCCccc-Ccccc-----------hhHHHHHHHHHhhhcccccCCCcchhhhhH
Confidence 256888999999999999999876322 21111 111122222211111101 0111111111
Q ss_pred ccccccCCCcccccccCCCCCCCccccCccCCcccceeEEEEEEEeecccccccchhHHHHHHHHHHHHHHHhhcccccc
Q 000762 528 YCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQ 607 (1296)
Q Consensus 528 ~~~~~~~s~~~cl~~~~~pl~~~~~lGg~~~~~~~~a~a~vit~~l~n~~~~~~~~~~~a~~we~~~~~~~~~~~~~~~~ 607 (1296)
.-+.. .+.+ .+-......+.- .++-..-.+...++...+..+.+ +..+..+.|++.. ++
T Consensus 595 ~~fl~-------~~~~-~~~~~di~~~~~-~~~~~~i~~f~f~~~~~~~~~~~-~~~~~~~~~R~ia----~~------- 653 (868)
T KOG1934|consen 595 ESFLK-------SPEF-SFWRNDIVFDNK-SDEETIIFAFRFTIGLTNLTKWN-ERTRLLETWRKIA----DE------- 653 (868)
T ss_pred HHHhc-------cccc-ccCccceEeccC-CCCCceEEEEEEEEEEeccCCHH-HHHHHHHHHHHHH----hh-------
Confidence 10000 0001 111122222211 11112234556666666543211 1122233443322 22
Q ss_pred CCCeEEEEcccc-hHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSES-SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 608 ~~~~~i~~~~~~-sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl 686 (1296)
.++++++...+. ...|.+......-+..++++++.|+++..+.+.+. ...+...++++.--+..+|+
T Consensus 654 ~~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~------------~~~~~it~si~SI~~GV~G~ 721 (868)
T KOG1934|consen 654 YSDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPNP------------LCVFWITLSIVSINIGVFGF 721 (868)
T ss_pred ccCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHhheeehHhhh
Confidence 234555444333 34566666555556678888888888877766542 22333333444444567899
Q ss_pred HHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchH
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (1296)
Q Consensus 687 ~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~ 766 (1296)
|++.|+++++ ++++.-.+-+|-.||.+-|+..+|.+.....++++|+..|++.+|.|++-++++|++|.+.+++.+...
T Consensus 722 lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V~sYm 800 (868)
T KOG1934|consen 722 LSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFVPSYM 800 (868)
T ss_pred hHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhchHHH
Confidence 9999999998 677777777888899999999888775544699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000762 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1296)
Q Consensus 767 vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r 799 (1296)
++.|.-...+.+.+.++=-+.++|++|++..+.
T Consensus 801 v~vF~KTv~LVv~~GllHGLv~LPviLs~f~~~ 833 (868)
T KOG1934|consen 801 VQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPI 833 (868)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999987754
No 42
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.57 E-value=1e-13 Score=184.21 Aligned_cols=158 Identities=13% Similarity=0.246 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.....+...++++++++++++++++++|++.++++++++++.+++.+++|+++|++||.+|++++++++|+.||++||++
T Consensus 334 ~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r~~li~~~~iP~s~~~~~~~~~~~g~~ln~~sl~gli~~iGi~VD~aIvv~ 413 (1044)
T TIGR00915 334 SASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVV 413 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecceEEEe
Confidence 45566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc---c-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 HAFSV---S-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPV 1270 (1296)
Q Consensus 1198 ~~f~~---~-~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~i---f~~f~f~m~~~iv~~g~lh~Lv~LPv 1270 (1296)
.++.+ + +.++.+++.+|.+++++||+.+. +|+++||+||+|..+.. ++.+ .......++++++.+++++|+
T Consensus 414 e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~tt-ltti~~flPl~~~~G~~g~~~~~~-~~~i~~~l~~S~l~al~~~P~ 491 (1044)
T TIGR00915 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1044)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 65432 2 34889999999999999999874 79999999999987533 3333 222334467788999999999
Q ss_pred HHHhhCC
Q 000762 1271 VLSVFGP 1277 (1296)
Q Consensus 1271 LLs~~gp 1277 (1296)
++.++.+
T Consensus 492 l~~~~~~ 498 (1044)
T TIGR00915 492 LCATMLK 498 (1044)
T ss_pred HHHHhcC
Confidence 9988754
No 43
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.56 E-value=5.3e-14 Score=182.54 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhh
Q 000762 1117 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1196 (1296)
Q Consensus 1117 y~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi 1196 (1296)
....+++....++.+++++++|++++++++++++|+.+++++.+++++++|+++|.+||.+|+..+++++|+.||++|.+
T Consensus 324 V~~si~~v~~tL~~a~~lVv~Vi~lFL~~~ratlI~~iaiPlsLlgtf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVV 403 (1009)
T COG0841 324 IKASIEEVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVV 403 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeEEeeeechHHHHHHHHHHHHhCccchHhHHHHHHHhhheeEeccEEE
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h---hhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1197 T---HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPV 1270 (1296)
Q Consensus 1197 ~---~~f~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~i---f~~f~f~m~~~iv~~g~lh~Lv~LPv 1270 (1296)
+ ++.++ +.++.+++.+|.++++.||+.+ |+|++..|+|++|.++-. |+.| +-.....++++++.++++.|+
T Consensus 404 vENI~R~~~-G~~p~~Aa~~a~~ei~~~via~-TlvliaVF~Pi~f~~G~~G~~f~~f-~~tia~a~~~S~~vAltltP~ 480 (1009)
T COG0841 404 VENIERHMR-GLPPREAAEKAMGEIGGAVIAI-TLVLIAVFLPMAFMGGSTGELFRQF-AITIAVAMLLSLLVALTLTPA 480 (1009)
T ss_pred EeeEEeecC-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7 34455 6689999999999999999977 589999999999999643 4443 233344578889999999999
Q ss_pred HHHhhCCCCc
Q 000762 1271 VLSVFGPPSR 1280 (1296)
Q Consensus 1271 LLs~~gp~~~ 1280 (1296)
|.+.+-++..
T Consensus 481 L~a~lLk~~~ 490 (1009)
T COG0841 481 LCARLLKPVP 490 (1009)
T ss_pred HHHHhCCccc
Confidence 9999976644
No 44
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.56 E-value=1.5e-13 Score=182.52 Aligned_cols=159 Identities=14% Similarity=0.261 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.....+....+.+++++++++++++++|++.++++++++++.+++++++|+++|++||.+|++++++++|+.||++||++
T Consensus 334 ~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r~~li~~~~iP~sl~~~~~~~~~~g~~ln~~sl~glil~iGi~VD~aIvvi 413 (1049)
T PRK15127 334 KISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVV 413 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHhhccceEEEe
Confidence 34567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPV 1270 (1296)
Q Consensus 1198 ~~f~~----~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~---if~~f~f~m~~~iv~~g~lh~Lv~LPv 1270 (1296)
.++.+ .+.++.+++.++.+++++|++.+. +|+++||+||+|..+. +++.+ ....+..++++++.+++++|+
T Consensus 414 e~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~t-ltt~~~f~Pl~~~~G~~g~~~~~~-~~~~~~~l~~S~l~al~~vP~ 491 (1049)
T PRK15127 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1049)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 66543 234889999999999999999874 7999999999997653 33333 223344567889999999999
Q ss_pred HHHhhCCC
Q 000762 1271 VLSVFGPP 1278 (1296)
Q Consensus 1271 LLs~~gp~ 1278 (1296)
++.++.++
T Consensus 492 l~~~~l~~ 499 (1049)
T PRK15127 492 LCATMLKP 499 (1049)
T ss_pred HHHHhCCc
Confidence 99987643
No 45
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.55 E-value=1.2e-13 Score=147.97 Aligned_cols=140 Identities=15% Similarity=0.242 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
+..++...++.++++++++++++.++ ++.++.++++++..++.++|+|+++|+++|..+++.+++++|++||+++|+..
T Consensus 44 ~~~~~~~~~l~~a~~lv~l~l~~~~r-~~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e 122 (192)
T TIGR00916 44 ELIKAGIIALLIGLVLVLLYMLLRYE-WRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFD 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehH
Confidence 34567788889999999999999888 77777777888888999999999999999999999999999999999999997
Q ss_pred hhhc-----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q 000762 1199 AFSV-----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 1265 (1296)
Q Consensus 1199 ~f~~-----~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~L 1265 (1296)
+|++ +++++++++.+|.+++++|++.+. +|+++|+.+|.++..+.++.| ...+.+|++.++
T Consensus 123 ~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~tt-lTtii~f~pl~~~~~~~~~~~-----~~~~~~gl~~s~ 188 (192)
T TIGR00916 123 RIREELRKYKGRTFREAINLGINQTLSRIIDTN-VTTLLAVLALYVFGGGAIKGF-----ALTLGIGVIAGT 188 (192)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHH
Confidence 7764 334889999999999999999996 799999999999988765554 233444554444
No 46
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.55 E-value=1.7e-13 Score=182.01 Aligned_cols=159 Identities=13% Similarity=0.259 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.....+....+.+++++++++++++++|++.++++++++++.+++++|+|+++|+++|.+|++.+++++|+.||++||++
T Consensus 334 ~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r~~li~~~~iP~si~~t~~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvv 413 (1037)
T PRK10555 334 KASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVV 413 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhhHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecCeEEeH
Confidence 45567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPV 1270 (1296)
Q Consensus 1198 ~~f~~----~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~i---f~~f~f~m~~~iv~~g~lh~Lv~LPv 1270 (1296)
.++.+ .+.++.+++.+|.+++++|++.+. +|++++|+|++|..+.. ++.+ .......++++++.+|+++|+
T Consensus 414 e~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~st-ltti~~flPl~~~~G~~g~~~~~l-~~~v~~~l~~S~~~al~l~P~ 491 (1037)
T PRK10555 414 ENVERIMSEEGLTPREATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGTTGAIYRQF-SITIVSAMVLSVLVAMILTPA 491 (1037)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 66543 234889999999999999998875 79999999999987643 3322 122233457788999999999
Q ss_pred HHHhhCCC
Q 000762 1271 VLSVFGPP 1278 (1296)
Q Consensus 1271 LLs~~gp~ 1278 (1296)
++..+.++
T Consensus 492 l~~~~~~~ 499 (1037)
T PRK10555 492 LCATLLKP 499 (1037)
T ss_pred HHHHHccc
Confidence 99988654
No 47
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.54 E-value=3.3e-13 Score=153.44 Aligned_cols=158 Identities=12% Similarity=0.189 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.++.+.....+.+++++|++.+++.|+ ++.+++++++++..++.++|+|+++|+++|..++..+++.+|++||+++|+.
T Consensus 123 ~~~~~~~~~a~~~al~~i~i~l~~~F~-~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG~sVnd~Ivv~ 201 (289)
T PRK13022 123 KELAQKGLLALLVALVGILIYIAFRFE-WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIGYSLNDTVVVF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHheeceEEEe
Confidence 466778888889999999999988885 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1198 ~~f~~~-----~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
.++++. +++.++++.+|..++++|++.++ +||++|+++|++..++.++.|-+. ++.-++.|++.++++.|.++
T Consensus 202 drire~~~~~~~~~~~~av~~a~~~~~~~~l~Ts-lTTl~~~l~L~~~g~~~i~~fa~~-l~~Gli~~~~~sl~i~p~l~ 279 (289)
T PRK13022 202 DRIRENFRKIRRKTFAEIINLSINQTLSRTIITS-LTTLLVVLALYLFGGGTLHDFALA-LLIGIIVGTYSSIFVASPLL 279 (289)
T ss_pred eHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 777643 24788999999999999999997 799999999999988888877433 34457889999999999999
Q ss_pred HhhCCC
Q 000762 1273 SVFGPP 1278 (1296)
Q Consensus 1273 s~~gp~ 1278 (1296)
.+++.+
T Consensus 280 ~~~~~~ 285 (289)
T PRK13022 280 LWLGVR 285 (289)
T ss_pred HHHhhc
Confidence 998643
No 48
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.54 E-value=2e-13 Score=181.18 Aligned_cols=160 Identities=16% Similarity=0.240 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhh
Q 000762 1116 QYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVH 1195 (1296)
Q Consensus 1116 qy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iH 1195 (1296)
.......+...++.+++++++++++++++|++.++++.+.+++.+++.+++|+++|++||.+|++.+++++|+.||++||
T Consensus 335 ~i~~~i~~~~~~l~~~~~lv~~vl~lfl~~~r~~~i~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iG~~Vd~aIv 414 (1040)
T PRK10503 335 NIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIV 414 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHheeeeecCeEE
Confidence 34455567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhc---cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1196 ITHAFSV---SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLP 1269 (1296)
Q Consensus 1196 i~~~f~~---~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s---~if~~f~f~m~~~iv~~g~lh~Lv~LP 1269 (1296)
++.++.+ +++++.+++.++..+++.|++++ |+|++++|+|++|+.. ++++.+ .......++++++.+++++|
T Consensus 415 v~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~-tltti~~f~Pl~~~~g~~G~~~~~~-~~~v~~~l~~S~~~al~~~P 492 (1040)
T PRK10503 415 VIENISRYIEKGEKPLAAALKGAGEIGFTIISL-TFSLIAVLIPLLFMGDIVGRLFREF-AVTLAVAILISAVVSLTLTP 492 (1040)
T ss_pred EehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9955543 33477899999999999999987 5899999999999875 555554 23334456788899999999
Q ss_pred HHHHhhCC
Q 000762 1270 VVLSVFGP 1277 (1296)
Q Consensus 1270 vLLs~~gp 1277 (1296)
++++.+.+
T Consensus 493 ~l~~~~l~ 500 (1040)
T PRK10503 493 MMCARMLS 500 (1040)
T ss_pred HHHHHhCc
Confidence 99997754
No 49
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.53 E-value=2.9e-13 Score=181.13 Aligned_cols=192 Identities=19% Similarity=0.266 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHHhhcc--cCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 000762 1081 DYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 1158 (1296)
Q Consensus 1081 d~i~al~~~r~ia~~~~~~--~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~ 1158 (1296)
+.++..++.++..+++++. .|+++.. .+--.+...........++.++++++++++++++++++.++++.+++++
T Consensus 291 n~v~~~~~v~~~l~~~~~~lp~~~~~~~---~~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfl~~~r~~liv~~~IPi 367 (1021)
T PF00873_consen 291 NIVEVSDAVKKRLEELQKTLPEGLEITI---VYDQSEYIEESINNLISNLLIGIILVVLVLLLFLRNWRSALIVALSIPI 367 (1021)
T ss_dssp BHHHHHHHHHHHHHHHGGGSSTTEEEEE---EEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccceEEE---EEechHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 4555556666666666532 2344322 1222233345566888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh---hhhhcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000762 1159 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGV 1234 (1296)
Q Consensus 1159 iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~---~~f~~~-~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~ 1234 (1296)
.++..+++|+++|++||.+|+.++++++|+-||++|-++ |+.+++ ++++.+++.++.++++.|++.+ |+||++.|
T Consensus 368 si~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~s-tlTti~vF 446 (1021)
T PF00873_consen 368 SILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILAS-TLTTIAVF 446 (1021)
T ss_dssp HHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999998 344455 6789999999999999999977 58999999
Q ss_pred HhhcccCchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCC
Q 000762 1235 IVLCFSRTEVFVVYYFQMY----LALVLLGFLHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1235 ~vLafs~s~if~~f~f~m~----~~iv~~g~lh~Lv~LPvLLs~~gp~ 1278 (1296)
+|++|.++..-+ | |+-+ ...++++++.+++++|++.+++-++
T Consensus 447 ~Pl~f~~G~~g~-~-~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~ 492 (1021)
T PF00873_consen 447 LPLLFMPGIAGQ-F-FRPLALTVIIALIASLLVALTLVPALAALFLKP 492 (1021)
T ss_dssp CGGGGSBHHHHH-H-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS--
T ss_pred hhhhhcCCchHH-H-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 999999864333 2 2332 3345677889999999999987543
No 50
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.51 E-value=3.5e-13 Score=153.33 Aligned_cols=165 Identities=11% Similarity=0.234 Sum_probs=143.4
Q ss_pred chHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 000762 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1296)
Q Consensus 619 ~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (1296)
+++.+|+.+. -...+++++++|++|+.+.++ + ..++..+++++.+++.++|+++++|++++. .
T Consensus 119 ~~vg~~~~~~---~~~a~~~al~~i~i~l~~~F~-~------------~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~ 181 (289)
T PRK13022 119 PQVGKELAQK---GLLALLVALVGILIYIAFRFE-W------------RFALGAIIALLHDVIITLGIFSLFQIEFDL-T 181 (289)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4565666543 334567888888888887663 3 238889999999999999999999999997 6
Q ss_pred hhHHHHHhhhccccceEehHHHHHHhc---CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 000762 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1296)
Q Consensus 699 ~~v~pflvlgIGvD~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a 775 (1296)
+.....+++|+++||.+++.+++++.. ++.+.++++.+++.++..+++.|++|++++|+.+.+...+.++.|++...
T Consensus 182 siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~ 261 (289)
T PRK13022 182 VIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFGGGTLHDFALALL 261 (289)
T ss_pred HHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 777778889999999999999999853 36899999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 000762 776 LAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~~r~ 800 (1296)
+|++.+++.++++.|+++.+..+|.
T Consensus 262 ~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 262 IGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999876654
No 51
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.49 E-value=2.7e-13 Score=145.33 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccc
Q 000762 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1296)
Q Consensus 634 ~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~ 713 (1296)
..+.++++++++++.+.+| ++ .++..+++++.++++++|+|+++|+++|. .+.+.+.+++|++|||
T Consensus 51 ~~l~~a~~lv~l~l~~~~r-~~------------~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~ 116 (192)
T TIGR00916 51 IALLIGLVLVLLYMLLRYE-WR------------GAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDD 116 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcC
Confidence 3467788888888777765 32 25667788888899999999999999997 7888889999999999
Q ss_pred eEehHHHHHHh-c--CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Q 000762 714 MCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 785 (1296)
Q Consensus 714 ~~~l~~~~~~~-~--~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~ 785 (1296)
.+|++++++++ + ++.+.++++.++.++.+++++.|++|++++|+.+.+.+.+.+|.|++...+|++++++.+
T Consensus 117 aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 117 TVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred eEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999875 3 578999999999999999999999999999999999999999999999999999998765
No 52
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.49 E-value=1.7e-12 Score=145.00 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.++.+.....++++++++++.+.+.++ ++.++++++++++.+++.+|+|+++|+++|..++..+++++|++||+++++.
T Consensus 94 ~~~~~~~~~~~~la~i~i~l~l~~~f~-~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~ 172 (246)
T TIGR00966 94 GELARKAVLALLAALVLILIYITVRFE-WRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVF 172 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEe
Confidence 455666677777777777777777666 8999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHH
Q 000762 1198 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1248 (1296)
Q Consensus 1198 ~~f~~~-----~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f 1248 (1296)
.++++. +++..+++.+|.+++++|++.+. +|+++|++||++...+.++.|
T Consensus 173 d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~tt-ltti~~flpl~~~~g~~~~~~ 227 (246)
T TIGR00966 173 DRIRENLRKYTRKTFTEVINLSINQTLSRTINTS-LTTLLAVLALYVFGGGVIKDF 227 (246)
T ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHH
Confidence 666532 34788999999999999999996 799999999999987665554
No 53
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.48 E-value=1.6e-11 Score=163.39 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----------h-hhHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHhhcc
Q 000762 1125 LINLAIAIGAVFVVCLITTC-----------S-FWSSAIILLVLTMIVVDLMGVMAILKIQLNAV-SVVNLVMAVGIAVE 1191 (1296)
Q Consensus 1125 ~~~l~lal~~iflv~~ll~~-----------s-~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~v-Slv~lviaiGisVD 1191 (1296)
+..++++.++|++...+.++ | ++.++..++.+++.++..+|+|.++|++++.+ +.+.-.+.+||+||
T Consensus 572 v~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD 651 (1204)
T TIGR00917 572 VITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVD 651 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Confidence 33556666666655444332 2 45577777888888999999999999999976 55656666788898
Q ss_pred chhhhhhhhhccC----C---------CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 000762 1192 FCVHITHAFSVSS----G---------DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL 1258 (1296)
Q Consensus 1192 f~iHi~~~f~~~~----~---------~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~ 1258 (1296)
+.-+++++|.+.. . +.++|+.++++++|.||+.++ +|+++||+..++++.+.++.| ....++.++
T Consensus 652 ~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~lts-lt~~~aF~~g~~s~~Pavr~F-~~~aa~av~ 729 (1204)
T TIGR00917 652 NIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLAS-LSESLAFFLGALSKMPAVRAF-SLFAGLAVF 729 (1204)
T ss_pred HHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHhccCChHHHHH-HHHHHHHHH
Confidence 8766667775321 1 578999999999999999997 799999999999999999987 333345678
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 000762 1259 LGFLHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1259 ~g~lh~Lv~LPvLLs~~gp~ 1278 (1296)
+.++..++++|++|++-+.+
T Consensus 730 ~~fll~it~f~alL~ld~rR 749 (1204)
T TIGR00917 730 IDFLLQITAFVALLVLDFKR 749 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988753
No 54
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.47 E-value=1.6e-12 Score=173.67 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.....+...++.+++++++++++++++|++.++++.+++++.+++.+.+|+++|++||.+|+. .+++|+.||++|.++
T Consensus 337 ~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r~~liv~~~iP~s~~~~~~~m~~~g~sln~~sl~--~l~iGilVDdaIVvv 414 (1051)
T TIGR00914 337 DAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGISANLMSLG--ALDFGLIVDGAVVIV 414 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH--HHHHHhhhcCcEEee
Confidence 344567777888999999999999999999999999999999999999999999999999985 567799999999988
Q ss_pred hh---hhcc-----C-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCc---hhHHHHHHHHHHHHHHHHH
Q 000762 1198 HA---FSVS-----S-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGF 1261 (1296)
Q Consensus 1198 ~~---f~~~-----~-----~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s---~if~~f~f~m~~~iv~~g~ 1261 (1296)
.+ ++++ + +++.+++.++.+++++||+++. +|++++|+|++|..+ ++|..+ ....+..+++++
T Consensus 415 E~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~st-lTti~~flPl~~~~g~~g~~~~~~-~~~v~~~l~~Sl 492 (1051)
T TIGR00914 415 ENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQ-LIITLVFLPIFTLTGVEGKMFHPM-AFTVVLALAGAM 492 (1051)
T ss_pred hHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccchHHHHhHHH-HHHHHHHHHHHH
Confidence 43 2222 1 3567899999999999999985 899999999998775 333333 223334456788
Q ss_pred HHHHHHHHHHHHhhCC
Q 000762 1262 LHGLVFLPVVLSVFGP 1277 (1296)
Q Consensus 1262 lh~Lv~LPvLLs~~gp 1277 (1296)
+.+|+++|++++.+.+
T Consensus 493 l~al~~~P~l~~~~~~ 508 (1051)
T TIGR00914 493 ILSLTFVPAAVALFIR 508 (1051)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998854
No 55
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.41 E-value=6.7e-12 Score=159.88 Aligned_cols=158 Identities=16% Similarity=0.242 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.+..+..+..+++++++|++++++.+++ .++++++.+++.++.++|+|+++|+++|..++..+++++|++||+++|+.
T Consensus 262 ~~a~~~~~~a~~ial~lV~i~l~~~fr~--~~lia~ial~~~v~~~l~~l~l~g~~l~l~siaglil~iGi~Vd~~Ivi~ 339 (755)
T PRK13024 262 QDAIDAGIIAGIIGFALIFLFMLVYYGL--PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIF 339 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhCcEEeh
Confidence 3456778888899999999999999986 68888888888899999999999999999999999999999999999999
Q ss_pred hhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000762 1198 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 1274 (1296)
Q Consensus 1198 ~~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~ 1274 (1296)
.+++++ +++.++++.++.+++++|++.+. +||++|+++|.+.....++.|- -+++..++++++.+++++|+++.+
T Consensus 340 eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~-lTTii~~lpL~~~g~g~~~~fa-itl~~Gli~s~~~sl~v~p~l~~~ 417 (755)
T PRK13024 340 ERIKEELRKGKSLKKAFKKGFKNAFSTILDSN-ITTLIAAAILFFFGTGPVKGFA-TTLIIGILASLFTAVFLTRLLLEL 417 (755)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877754 34788999999999999999996 7999999999986666677663 344456788999999999999999
Q ss_pred hCCCC
Q 000762 1275 FGPPS 1279 (1296)
Q Consensus 1275 ~gp~~ 1279 (1296)
+.++.
T Consensus 418 ~~~~~ 422 (755)
T PRK13024 418 LVKRG 422 (755)
T ss_pred hhccC
Confidence 87654
No 56
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.37 E-value=1.4e-11 Score=140.32 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
+..+.....+++|+++|++++++.+++++.++.++++++..+++++|+|+++|+++|..++..+++++|++||++|++..
T Consensus 131 ~~~~~~~~al~~alilI~i~l~l~F~s~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~d 210 (292)
T PRK08578 131 QFQEQALKAVGFAFIGMAVVVFLIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTT 210 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHHHHHheeecCcEEEeh
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000762 1199 AFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFS----RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 1274 (1296)
Q Consensus 1199 ~f~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs----~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~ 1274 (1296)
++++.+++.++++.+|++. + +.. ++||++|+++|++. ..+.++.|-. .++..++++++.++++.+.++.+
T Consensus 211 ri~~~~~~~~eai~~a~~~-~--i~t--slTTl~~~lpL~l~~~~~g~~~~~~fal-~l~~Gli~s~~~tl~~~~~~l~~ 284 (292)
T PRK08578 211 RVLKRRGTFDESIKRAMRT-G--ITM--TLTTIAAMAVLYIVSTIPQAEVLANIAA-VLIFGLLADLMNTWLLNAGILRW 284 (292)
T ss_pred HHHHccCCHHHHHHHHHHH-H--HHH--HHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876656888999999843 3 443 36999999999754 4566666533 33344678888888888888887
Q ss_pred hCCC
Q 000762 1275 FGPP 1278 (1296)
Q Consensus 1275 ~gp~ 1278 (1296)
++.+
T Consensus 285 ~~~~ 288 (292)
T PRK08578 285 YKTE 288 (292)
T ss_pred HHhc
Confidence 7543
No 57
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.37 E-value=1.2e-11 Score=149.58 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhcccc
Q 000762 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1296)
Q Consensus 633 ~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD 712 (1296)
+..++++++++++|+++.++. .|+..++.++++++.++|+|.++|+++|+ .....-.+++|++||
T Consensus 336 ~~A~lig~ilV~i~m~~~yr~--------------~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD 400 (498)
T PRK05812 336 LIAGLIGLALVLLFMILYYRL--------------FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVD 400 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEe
Confidence 445678888888888887753 27888999999999999999999999997 677777788999999
Q ss_pred ceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1296)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~pa 791 (1296)
+.+++.++++++ +.+.+..+++.++.++++.+++.|++|++++|+.+.+.....+|.|++...+|++++++.++++.|+
T Consensus 401 ~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~ 480 (498)
T PRK05812 401 ANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRA 480 (498)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 5788999999999999999999999999999998887666789999999999999999999999999
Q ss_pred HHHHhhh
Q 000762 792 LIVFDFL 798 (1296)
Q Consensus 792 lL~l~~~ 798 (1296)
++.+..+
T Consensus 481 l~~~~~~ 487 (498)
T PRK05812 481 LVNLLYG 487 (498)
T ss_pred HHHHHHh
Confidence 9986554
No 58
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.36 E-value=1.6e-11 Score=145.31 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.+..+..+..+.+++++|++++++.++ +.++++.+++++.++.++|+|+++|++||..++..+++++|++||+++++.
T Consensus 244 ~~~i~~~~~a~~ig~ilV~l~~~~~yr--~~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~ 321 (397)
T TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYR--LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIY 321 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEe
Confidence 345567888889999999999999998 678888899999999999999999999999999999999999999999999
Q ss_pred hhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1198 ~~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
.+++++ +++..+++.++.+++++||+.+. +|+++++++|.+..+..++-|- .+++..++++++.++++.+.++
T Consensus 322 erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~-lTtlia~l~L~~~g~g~~~~fA-~tl~igii~s~~~sl~vtr~~~ 397 (397)
T TIGR01129 322 ERIKEELRLGKSVRQAIEAGFERAFSTIFDAN-ITTLIAALILYVFGTGPVKGFA-VTLAIGIIASLFTALVFTRLLL 397 (397)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 877654 34788999999999999999986 7999999999986655666653 3344456788888899888764
No 59
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.35 E-value=3.3e-11 Score=134.63 Aligned_cols=140 Identities=14% Similarity=0.257 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccc
Q 000762 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1296)
Q Consensus 634 ~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~ 713 (1296)
..++++++++++|+.+.++ | ..++..++.++++++.++|++.++|+++|. .+.+...+++|+.|||
T Consensus 102 ~~~~la~i~i~l~l~~~f~-~------------r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd 167 (246)
T TIGR00966 102 LALLAALVLILIYITVRFE-W------------RFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSIND 167 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccC
Confidence 3456666777777666543 2 237888999999999999999999999997 6778888899999999
Q ss_pred eEehHHHHHHh-c--CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Q 000762 714 MCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQIT 787 (1296)
Q Consensus 714 ~~~l~~~~~~~-~--~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt 787 (1296)
++++.++++|. + ++.+..+++.++.++..++++.|++|++++|+.+.+.+-+.+|.|++...+|+++..+.++.
T Consensus 168 ~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 168 TVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred eEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 2 47899999999999999999999999999999888887799999999999999999888765
No 60
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.33 E-value=3e-11 Score=146.01 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
+..+..+..+++++++|++++++.++ +.++++.+++++.++.++|+|+++|++||..++.++++++|++||+++.+..
T Consensus 330 ~~i~~~~~A~lig~ilV~i~m~~~yr--~~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~E 407 (498)
T PRK05812 330 DSIRAGLIAGLIGLALVLLFMILYYR--LFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFE 407 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeH
Confidence 45677788888999999999999888 4788888999999999999999999999999999999999999999999998
Q ss_pred hhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000762 1199 AFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1275 (1296)
Q Consensus 1199 ~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~ 1275 (1296)
+++++ +++..+++.++.+++++||+.+. +|+++++++|.+..+..++-|- .++++.++++++.++++.|+++.++
T Consensus 408 rIreel~~g~~~~~Ai~~~~~~~~~~Il~s~-lTTlia~l~L~~~g~g~i~~fA-itl~iGii~s~~~sl~vtp~l~~~~ 485 (498)
T PRK05812 408 RIREELREGRSLRSAIEAGFKRAFSTILDSN-ITTLIAAIILYALGTGPVKGFA-VTLGIGILTSMFTAITVTRALVNLL 485 (498)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654 35788999999999999999986 6999999999986555666663 3334457888999999999999965
Q ss_pred C
Q 000762 1276 G 1276 (1296)
Q Consensus 1276 g 1276 (1296)
-
T Consensus 486 ~ 486 (498)
T PRK05812 486 Y 486 (498)
T ss_pred H
Confidence 3
No 61
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.32 E-value=2.5e-11 Score=143.77 Aligned_cols=147 Identities=14% Similarity=0.216 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccc
Q 000762 632 DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGV 711 (1296)
Q Consensus 632 d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGv 711 (1296)
-+..++++++++++|+++.+|+ .|++.++.++++++.++|+|+++|.++|+ .+...-.+++|++|
T Consensus 250 ~~~a~~ig~ilV~l~~~~~yr~--------------~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~V 314 (397)
T TIGR01129 250 GIKAGLIGLVLVLVFMILYYRL--------------FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAV 314 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheee
Confidence 3445788888999998888763 27888899999999999999999999997 67777778899999
Q ss_pred cceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 712 DNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFV 790 (1296)
Q Consensus 712 D~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~p 790 (1296)
||.+++.++++++ +++.+..+++.++.++++.+++.|++|++++|+.+.+...+.+|.|++...+|++++++.++++.+
T Consensus 315 D~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr 394 (397)
T TIGR01129 315 DANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTR 394 (397)
T ss_pred eceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 567889999999999999999999999999999888766678999999999999999999999987
Q ss_pred HHH
Q 000762 791 ALI 793 (1296)
Q Consensus 791 alL 793 (1296)
.++
T Consensus 395 ~~~ 397 (397)
T TIGR01129 395 LLL 397 (397)
T ss_pred hhC
Confidence 653
No 62
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.31 E-value=7.3e-11 Score=147.99 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhh
Q 000762 1120 IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHA 1199 (1296)
Q Consensus 1120 i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~ 1199 (1296)
.....+....++++++++.+.+.++. .++++.+++++.++.++|+|.++|++||..++..+++++|++||+++++..+
T Consensus 276 ~~~~~~~A~ii~~~lV~lfm~~~Y~~--~glia~iaL~~~v~~tl~~l~l~g~~Lnl~siaGlIL~IGm~VD~~Ivi~Er 353 (758)
T PRK13023 276 YASAAVLAALLAALVVGLFMVLSYGI--LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYER 353 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHhccCcEEEeeH
Confidence 34455555566666666666666653 5788888889999999999999999999999999999999999999999977
Q ss_pred hhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000762 1200 FSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1200 f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
++++ +++.++++.++..++++||+.+. +|+++++++|.+..+..++-|- .+++..++++++.++++.|+++.++.
T Consensus 354 ireel~~G~~~~~Av~~g~~~~~~~Il~s~-lTTlia~lpL~~~g~g~ik~FA-itliiGi~~S~~~al~vt~~l~~~~~ 431 (758)
T PRK13023 354 VREDRRKGYSVVQAMESGFYRALSTIVDAN-LTTLIAALVLFLLGSGTVHGFA-LTVAIGIGTTLFTTLTFTRLLIAQWV 431 (758)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7643 45888999999999999999996 7999999999988877777663 34445678899999999999999885
Q ss_pred CC
Q 000762 1277 PP 1278 (1296)
Q Consensus 1277 p~ 1278 (1296)
..
T Consensus 432 ~~ 433 (758)
T PRK13023 432 RT 433 (758)
T ss_pred hh
Confidence 44
No 63
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.30 E-value=1.6e-10 Score=131.77 Aligned_cols=166 Identities=10% Similarity=0.162 Sum_probs=131.7
Q ss_pred EEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 000762 612 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (1296)
Q Consensus 612 ~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G 691 (1296)
+...-| +++.+|..+. -...++++.++|++|+.+.+++ +..++..+++++..+++++|+++++|
T Consensus 120 ~~~~Vg-p~~g~~~~~~---~~~al~~alilI~i~l~l~F~s------------~~~~l~~~lal~~dv~~tlg~~~l~g 183 (292)
T PRK08578 120 SEKQIG-PTFGSQFQEQ---ALKAVGFAFIGMAVVVFLIFRT------------PVPSLAVILSAFSDIIIALALMNLFG 183 (292)
T ss_pred eeeeeC-cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444 4455555442 2345678888898998887754 34578888899999999999999999
Q ss_pred ccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc----CchHH
Q 000762 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI----PMPAC 767 (1296)
Q Consensus 692 ~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s----~~p~v 767 (1296)
+++|. .+...-.+++|+++||.+++.+++++.. .+.++++.+++++. +.+++|++++|+.+.+. ..+.+
T Consensus 184 ~~ln~-~~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~----i~tslTTl~~~lpL~l~~~~~g~~~~ 256 (292)
T PRK08578 184 IELSL-ATVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG----ITMTLTTIAAMAVLYIVSTIPQAEVL 256 (292)
T ss_pred ccccH-HHHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHH
Confidence 99997 4555555789999999999999998753 58889999998543 45679999999977543 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000762 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 768 r~F~i~~a~av~~~~l~~lt~~palL~l~~~r~ 800 (1296)
|.|++...+|++++++.++++.++++.+..+|+
T Consensus 257 ~~fal~l~~Gli~s~~~tl~~~~~~l~~~~~~~ 289 (292)
T PRK08578 257 ANIAAVLIFGLLADLMNTWLLNAGILRWYKTEG 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999887664
No 64
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.28 E-value=1.5e-10 Score=146.92 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.+..+..+.++.+++++++++++++++. .++++.+.+++.++.++|+|.++|++||..++..+++++|++||.++.+.
T Consensus 368 ~~~i~~~~~aliig~ilV~l~m~lfyr~--~glia~ial~~~vl~~l~~l~l~g~tLnl~~IaGiil~IGm~VD~~IVI~ 445 (855)
T PRK14726 368 ADSIAAGLVAGLIAAILVAALMIGFYGF--LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIY 445 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcceeHHHHHHHHHHHHhhhCceEEeH
Confidence 3455677778888888888888887773 78888999999999999999999999999999999999999999999999
Q ss_pred hhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000762 1198 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 1274 (1296)
Q Consensus 1198 ~~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~ 1274 (1296)
.+.+++ +++..+++..+.++++.||+.+. +||++++++|.|-.+..++-|- -++...++.+++.++++.|+++++
T Consensus 446 ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~-lTTlia~lpL~~~g~~~ikgFA-vtl~igii~Sl~~Al~vtp~l~~~ 523 (855)
T PRK14726 446 ERIREEEKTGHSLIQALDRGFSRALATIVDAN-VTILIAAVILFFLGSGAVRGFA-VTLAVGILTTVFTAFTLTRSLVAV 523 (855)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777654 34788999999999999999886 7999999999998888888764 334456788999999999999998
Q ss_pred hCCC
Q 000762 1275 FGPP 1278 (1296)
Q Consensus 1275 ~gp~ 1278 (1296)
+.+.
T Consensus 524 ~l~~ 527 (855)
T PRK14726 524 WLRR 527 (855)
T ss_pred Hhcc
Confidence 8543
No 65
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.26 E-value=2.4e-10 Score=129.49 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
++.+..+..+++|+++|++.+++.++ ++.++.++++++.-+++++|++.++|+++|..+++.+++.+|++|++++-+..
T Consensus 123 ~~~~~~~~a~~~ali~I~lyl~~rF~-~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~d 201 (297)
T PRK13021 123 ELAEQGGLALLVAMLCILGYLSYRFE-WRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIAD 201 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEee
Confidence 55678888899999999999998888 99999999999999999999999999999999999999999999999999987
Q ss_pred hhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1199 AFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1273 (1296)
Q Consensus 1199 ~f~~~~-----~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs 1273 (1296)
++++.. .+.++++.+|..++.+|+++++ +|+++|++||++..+...+.|-+.+ +.-+++|.+.++++-+.++-
T Consensus 202 rire~~~~~~~~~~~e~i~~ai~~~lrr~l~Ts-lTt~l~llpL~l~G~~~~~~fA~~l-i~Gli~gt~sslfva~pl~~ 279 (297)
T PRK13021 202 RIRELLIAKPKLAIQEINNQAIVATFSRTMVTS-GTTLMTVGALWIMGGGPLEGFSIAM-FIGILTGTFSSISVGTSLPE 279 (297)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 776432 3678999999999999999997 7999999999998777777664333 33467788888888777766
Q ss_pred hhC
Q 000762 1274 VFG 1276 (1296)
Q Consensus 1274 ~~g 1276 (1296)
+++
T Consensus 280 ~~~ 282 (297)
T PRK13021 280 LLG 282 (297)
T ss_pred HHc
Confidence 665
No 66
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.24 E-value=1.2e-10 Score=141.17 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhh-cccccchhhhHHHHHhhhcccc
Q 000762 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVD 712 (1296)
Q Consensus 634 ~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~-G~~~~~i~~~v~pflvlgIGvD 712 (1296)
..++++++++++|+.+.+++. |+...+.+++.++.++|+|+++ |.++|+ +...-..+.+|+.||
T Consensus 444 ~A~iig~vlV~lFm~~~Yr~~--------------glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVD 508 (604)
T PRK12933 444 AALALGMGITLLFMALWYRRL--------------GWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVD 508 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhcc
Confidence 345666677777766554432 7888899999999999999998 999997 566666778899999
Q ss_pred ceEehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1296)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~pa 791 (1296)
+.+++.++.+++ +.+.+..+++..+..++..+++.+++|++++|+.+.+..-.++|.|++...+|++.+++.++++.|+
T Consensus 509 anIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~ 588 (604)
T PRK12933 509 TNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRA 588 (604)
T ss_pred CcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 5678999999999999999999999999999998776666679999999999999999999999999
Q ss_pred HHHHhhhhc
Q 000762 792 LIVFDFLRA 800 (1296)
Q Consensus 792 lL~l~~~r~ 800 (1296)
++.+..++.
T Consensus 589 l~~~~~~~~ 597 (604)
T PRK12933 589 LINLVYGRD 597 (604)
T ss_pred HHHHHhccc
Confidence 998765543
No 67
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.15 E-value=2e-09 Score=114.75 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=133.1
Q ss_pred chHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 000762 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1296)
Q Consensus 619 ~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (1296)
+++.+|..+. -+..++++++++++|+.+.++ +..++..++..+..++.++|+++++|+++++ .
T Consensus 23 p~~g~~~~~~---~~~a~~~al~~i~iyi~~rf~-------------~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~ 85 (189)
T PF02355_consen 23 PTLGSDLLKS---ALIALIIALIAILIYIFLRFR-------------WRFALAAIIALIHDVLITLGIFSLFGIELTL-P 85 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-H
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4555555442 334567788888888877653 2247778888888999999999999999998 5
Q ss_pred hhHHHHHhhhccccceEehHHHHHHh---cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 000762 699 MEVIPFLVLAVGVDNMCILVHAVKRQ---QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1296)
Q Consensus 699 ~~v~pflvlgIGvD~~~~l~~~~~~~---~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a 775 (1296)
....-.+++|.+|||.+++.+|.+|+ .++.+.++++.++++++....+.|++|+.+..+.+.+..-..+|.|++...
T Consensus 86 ~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~ 165 (189)
T PF02355_consen 86 SIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLI 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 66666788999999999999999996 257899999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 000762 776 LAVLLDFLLQITAFVALIVFDFL 798 (1296)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~~ 798 (1296)
+|++.+.+.++.+-++++.+..+
T Consensus 166 iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 166 IGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987664
No 68
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.14 E-value=1.3e-09 Score=132.16 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHhhccchhhh
Q 000762 1120 IWRTALINLAIAIGAVFVVCLITTCSF--WSSAIILLVLTMIVVDLMGVMAIL-KIQLNAVSVVNLVMAVGIAVEFCVHI 1196 (1296)
Q Consensus 1120 i~~~~~~~l~lal~~iflv~~ll~~s~--~~~lii~l~i~~iiv~v~G~M~l~-gI~Ln~vSlv~lviaiGisVDf~iHi 1196 (1296)
+-.+.+.....|+++.++++++++..+ +.++++.+.+++.++.++|+|.++ |.+||..++.++++++|++||..|-+
T Consensus 434 LG~~~i~~gl~A~iig~vlV~lFm~~~Yr~~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI 513 (604)
T PRK12933 434 LGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLI 513 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEE
Confidence 334555555555555555555544443 678888899999999999999998 99999999999999999999999999
Q ss_pred hhhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1197 THAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1273 (1296)
Q Consensus 1197 ~~~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs 1273 (1296)
..+.+++ +++..+++..+..++.++|+.+. +||++.+++|.+-.+..++-|-+. +.+.++.+++.++++.|+++.
T Consensus 514 ~ERIrEel~~G~s~~~Ai~~G~~~a~~~Ildan-lTTlia~lpL~~~Ggg~ikgFAvT-L~iGIl~S~ftAi~vtr~l~~ 591 (604)
T PRK12933 514 FERIKDKLKEGRSFAQAIDTGFDSAFSTIFDAN-FTTMITAVVLYSIGNGPIQGFALT-LGLGLLTSMFTGIFASRALIN 591 (604)
T ss_pred ehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8666543 45788999999999999999885 799999999987777677776433 344578899999999999998
Q ss_pred hhCCC
Q 000762 1274 VFGPP 1278 (1296)
Q Consensus 1274 ~~gp~ 1278 (1296)
++-..
T Consensus 592 ~~~~~ 596 (604)
T PRK12933 592 LVYGR 596 (604)
T ss_pred HHhcc
Confidence 87544
No 69
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.13 E-value=2.8e-09 Score=120.95 Aligned_cols=169 Identities=13% Similarity=0.190 Sum_probs=141.1
Q ss_pred EEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 000762 612 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (1296)
Q Consensus 612 ~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G 691 (1296)
+...-| +++.+|+.+. -...+++++++|++|+.+-++ + ..++..++.++..++.++|++.++|
T Consensus 112 ~~~~Vg-p~~g~~~~~~---~~~a~~~ali~I~lyl~~rF~-~------------~~~l~al~al~~dv~~~l~~l~l~g 174 (297)
T PRK13021 112 NSSIVG-PQVGQELAEQ---GGLALLVAMLCILGYLSYRFE-W------------RLASGALFALVHDVIFVLAFFALTQ 174 (297)
T ss_pred EEeEEC-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333333 5677777654 345567788888888877654 3 3477788999999999999999999
Q ss_pred ccccchhhhHHHHHhhhccccceEehHHHHHHhc---CCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHH
Q 000762 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768 (1296)
Q Consensus 692 ~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr 768 (1296)
.+++. ...+.-..++|+.++|.+++.+++++.. ++.+.++++.++..+.-.++++|++|++++.+.+++..-+.+|
T Consensus 175 ~~l~~-~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G~~~~~ 253 (297)
T PRK13021 175 MEFNL-TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLE 253 (297)
T ss_pred CCccH-HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 99996 5666667789999999999999999743 5678999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000762 769 VFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1296)
Q Consensus 769 ~F~i~~a~av~~~~l~~lt~~palL~l~~~ 798 (1296)
.|++...+|++...+.++.+-++++.++..
T Consensus 254 ~fA~~li~Gli~gt~sslfva~pl~~~~~~ 283 (297)
T PRK13021 254 GFSIAMFIGILTGTFSSISVGTSLPELLGL 283 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998888776643
No 70
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.09 E-value=2e-09 Score=137.06 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhcc---CCC
Q 000762 1130 IAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGD 1206 (1296)
Q Consensus 1130 lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~---~~~ 1206 (1296)
+++++||+++..-+. +++..+.+++.++.++|+|+++|++||..++.++++++|++||.+|.+..+.+++ +++
T Consensus 919 laLVlIFMlL~YRf~----GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREELr~Gks 994 (1403)
T PRK12911 919 LAVLIVLMSVYYRFG----GVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRS 994 (1403)
T ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCC
Confidence 334444444444333 4445555556667778999999999999999999999999999999999766654 457
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 000762 1207 KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1279 (1296)
Q Consensus 1207 ~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~ 1279 (1296)
..+++.++..++.+||+.+. +||++|+++|.+..+..++-|- .++++.++++++.++++.|+++.++..+.
T Consensus 995 l~eAI~~G~~~afs~ILdTn-LTTLIA~lPLf~fGtG~vkgFA-vTLiIGII~SmftALfVtP~Ll~l~l~~~ 1065 (1403)
T PRK12911 995 LSESVEAGYKKAFSAIFDSN-LTTILASALLLMLDTGPIKGFA-LTLIIGIFSSMFTALFMTKFFFMIWMNKT 1065 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999996 7999999999555544466653 33445578899999999999999886543
No 71
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.08 E-value=5.3e-09 Score=111.62 Aligned_cols=156 Identities=17% Similarity=0.260 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhh
Q 000762 1118 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1197 (1296)
Q Consensus 1118 ~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~ 1197 (1296)
.+..+..+..++++++++++.+++.++ ++.++..++.++.-++.++|+|.++|+++|..++..+++.+|.+||.++-+.
T Consensus 27 ~~~~~~~~~a~~~al~~i~iyi~~rf~-~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~IVif 105 (189)
T PF02355_consen 27 SDLLKSALIALIIALIAILIYIFLRFR-WRFALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDNIVIF 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcceeeh
Confidence 456678888899999999998888887 4567777777777788899999999999999999999999999999999999
Q ss_pred hhhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1198 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1198 ~~f~~~-----~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
.+.+++ +++.++++.++..++.+..+.+. +|+++.+++|.+-.+...+.|.+.+ +..++.|++.++++-+.++
T Consensus 106 dRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~~l-~iGvi~~~~ss~~ia~~l~ 183 (189)
T PF02355_consen 106 DRIREELRASRGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFALTL-IIGVIIGTYSSLFIARPLL 183 (189)
T ss_dssp HHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 777765 34778999999999999888775 6888888888877777778775444 4457889999999999988
Q ss_pred HhhC
Q 000762 1273 SVFG 1276 (1296)
Q Consensus 1273 s~~g 1276 (1296)
.++.
T Consensus 184 ~~l~ 187 (189)
T PF02355_consen 184 YWLV 187 (189)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7763
No 72
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=99.04 E-value=7.5e-09 Score=123.00 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhcccCceecccceeehhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 000762 1085 SMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLD-----IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 1159 (1296)
Q Consensus 1085 al~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~-----i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~i 1159 (1296)
..+++++++..++. | ..|.+....+.++... ..+..+....++++++++++++.++.+...+.+.+++++-
T Consensus 223 ~~~eA~~La~~L~~--G--aLP~~~~i~~~~~v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~~~i~~iaL~~~~~ 298 (417)
T PRK08343 223 AKEEAKELYIHLRS--G--ALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSE 298 (417)
T ss_pred CHHHHHHHHHHHhc--c--ccCCCeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777642 1 1222222222222222 2234445555666666666666666665555444555556
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Q 000762 1160 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1238 (1296)
Q Consensus 1160 iv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~-~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLa 1238 (1296)
++.++|+|+++|.+||..++.++++++|++||..|.+..+.+++.+ +.++++..+++...++|+.+. +|+++|++||+
T Consensus 299 v~~~lg~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~~~~~~~~~~ai~~g~~~a~~~Il~t~-lTTiia~lpL~ 377 (417)
T PRK08343 299 VIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLHEGKVPSRKVFLSRIKRAFFIIFAAA-ATTIAAMSPLA 377 (417)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHHHhCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 7778999999999999999999999999999999999966554443 677889999999999999986 79999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1239 FSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1272 (1296)
Q Consensus 1239 fs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLL 1272 (1296)
+.....++- +..++++|++.+.++.-.++
T Consensus 378 ~~g~g~ikg-----fAitliiGii~s~~iTrp~~ 406 (417)
T PRK08343 378 VMGLGDLKG-----FAITTILGVLIGVLITRPAY 406 (417)
T ss_pred Hhccccccc-----hHHHHHHHHHHHHHHHHHHH
Confidence 875443333 33445667666766554444
No 73
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.5e-08 Score=124.48 Aligned_cols=190 Identities=17% Similarity=0.262 Sum_probs=135.9
Q ss_pred chhhHHHHHHH-HHHHHHHhhcccCceecccceeehhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 000762 1078 RQIDYVNSMRA-AREFSSRVSDSLQMEIFPYSVFYMYFEQY---LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIIL 1153 (1296)
Q Consensus 1078 ~~~d~i~al~~-~r~ia~~~~~~~~~~v~~~s~~~vf~eqy---~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~ 1153 (1296)
+..+.+++.++ .+++.+.++ .|+++.++ ||+- +.-+.+...++.=..++|.++++++++|++++++++
T Consensus 294 nt~~V~~aV~~kl~elk~~LP--~gVki~~~------ydRs~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~RsAli~~ 365 (1027)
T COG3696 294 NTREVIAAVKEKLEELKKSLP--EGVKIVTT------YDRSELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRSALIVI 365 (1027)
T ss_pred ChHHHHHHHHHHHHHHHhhCC--CCcEEEEE------eeHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHH
Confidence 34455555544 334444432 36666432 3443 344456666777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh-hhh--c----cCCCHHHHHHHHHHHhhHHHHHHH
Q 000762 1154 LVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH-AFS--V----SSGDKNQRMKEALGTMGASVFSGI 1226 (1296)
Q Consensus 1154 l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~-~f~--~----~~~~~~erv~~Al~~~G~pVl~g~ 1226 (1296)
++++++++..+-+|..+|++.|.+|+-++++++|+-||-++-++. .|+ + ....+-+.+.+|.+++++||++|-
T Consensus 366 ~~lPLS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~ 445 (1027)
T COG3696 366 ISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGL 445 (1027)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhhcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhh
Confidence 999999999999999999999999999999999999999998882 222 2 123567889999999999999985
Q ss_pred HHHHHHHHHhhc-cc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 000762 1227 TLTKLVGVIVLC-FS--RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1277 (1296)
Q Consensus 1227 tlTt~~G~~vLa-fs--~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp 1277 (1296)
. -..+-|+|+. |. ..++|.-.-|.. ...++.+++.++++.|++.+++=.
T Consensus 446 l-II~vvf~PIFtL~GvEGklF~Pma~t~-~~al~~a~llsiT~iPal~~~~i~ 497 (1027)
T COG3696 446 L-IITVVFLPIFTLTGVEGKLFAPLAFTK-TYALLAALLLSITFIPALMAYLIR 497 (1027)
T ss_pred h-hheeehhhhheeccccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 3334444442 22 245554432222 233567788899999999998843
No 74
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.96 E-value=2.8e-10 Score=141.48 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=144.0
Q ss_pred CCCeEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~ 687 (1296)
.+.+++...+--.-++++++....|.....++-..|...+++.. +.++..+.++..+.+++..++++.
T Consensus 303 ~~kv~~~~~~~~~~~~~~~~~~l~ds~la~l~~~~v~~~v~i~t------------~s~f~tf~~~~~i~ls~~~a~f~y 370 (999)
T KOG3664|consen 303 NEKVRVVGIDLDLKNELFNELILTDSLLASLSALLVMASVWIYT------------GSAFITFMSIVAICLSLGVALFFY 370 (999)
T ss_pred ccceeeeehhhhhHHHHHHHHhccchHHHHhccccceeEEEEec------------CcHHHHHHHHHHHHHHhhHHHhhh
Confidence 45567777666666788888888888776665555544433322 236778889999999999999888
Q ss_pred H-hhcccccchhhhHHHHHhhhccccceEehHHHHHHhc-------------------CCCCHHHHHHHHHHHhhHHHHH
Q 000762 688 S-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-------------------LELPLETRISNALVEVGPSITL 747 (1296)
Q Consensus 688 ~-~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~-------------------~~~~~~~~i~~~l~~~g~si~l 747 (1296)
+ .+|+.+-+++..+.-++++|||.||.|++...|+|.. .....+......+.+..++|++
T Consensus 371 ~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l~~~~~ll~~~~~l~~~h~~~smfv 450 (999)
T KOG3664|consen 371 AVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLELSDHTELLENVFALTLRHASFSMFV 450 (999)
T ss_pred eeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccccccchhHHHHHHhhhhhhhhHHHHH
Confidence 5 4577777777788888999999999999999994411 0122456677788999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000762 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 748 tslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL~l~~~r~ 800 (1296)
|++|++++|.....++.+.+|-|+++++..+.+++..+++++||..++..++.
T Consensus 451 t~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~~ 503 (999)
T KOG3664|consen 451 TSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRLF 503 (999)
T ss_pred HHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999877766543
No 75
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=98.92 E-value=6.6e-08 Score=127.35 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=149.5
Q ss_pred HHHHHHHHHHhhcccCceecccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 000762 1086 MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1165 (1296)
Q Consensus 1086 l~~~r~ia~~~~~~~~~~v~~~s~~~vf~eqy~~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G 1165 (1296)
.+..|.+.++.....+.+++..|....-.++.....++.-....+++.++++++++.++|+.++++.++++.+.+....|
T Consensus 148 ~~~v~~~v~~~~~~~~~~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s~i~a~lpL~t~~~s~~~a~~ 227 (937)
T COG2409 148 VEAVRSIVRQLPAPDGLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRSVITAFLPLITVGLSLLVAQG 227 (937)
T ss_pred HHHHHHHhcccCCCCceEEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666555433466677777766666666666667777778888999999999999999999999888777766655
Q ss_pred HHHHh----ccccchH-HHHHHHHHHHhhccchhhhhhhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 000762 1166 VMAIL----KIQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 1237 (1296)
Q Consensus 1166 ~M~l~----gI~Ln~v-Slv~lviaiGisVDf~iHi~~~f~~~---~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vL 1237 (1296)
...++ +..++-. ..+...+.+|+++||++.++-+|+++ +.++++++..+++..|..|...+ .|.++++..|
T Consensus 228 iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg-~tV~~a~~~l 306 (937)
T COG2409 228 IVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSG-LTVAIALLGL 306 (937)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhh-hHHHHHHHHH
Confidence 55533 3434333 33555678899999999999999855 34899999999999999999887 5888999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 000762 1238 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 1282 (1296)
Q Consensus 1238 afs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~~~~ 1282 (1296)
.|++.+.++.. .-.....+.++++.++.++|++++++|++....
T Consensus 307 ~~a~~~~~~s~-g~~~ai~V~va~l~slTllPAll~llg~~~~~~ 350 (937)
T COG2409 307 SFARLPFLKTL-GIAAAIGVAVAVLAALTLLPALLALLGRRGFWP 350 (937)
T ss_pred Hhcccchhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcC
Confidence 99999988875 223345567788999999999999999887444
No 76
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.87 E-value=1.6e-07 Score=106.29 Aligned_cols=175 Identities=14% Similarity=0.257 Sum_probs=141.5
Q ss_pred eEEEEcccchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 000762 611 LTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (1296)
Q Consensus 611 ~~i~~~~~~sl~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~ 690 (1296)
-++.+-| +.+.+|+.+. -+..++++++.|++|+.+-++ +..++.+++..+-=++.++|+|+++
T Consensus 119 ~~~~~Vg-p~vg~eL~~~---~~~Al~~alv~I~iYV~~RFe-------------~~~a~aaI~al~hDvii~~g~~slf 181 (305)
T COG0341 119 RSVEFVG-PTVGKELARQ---GLLALLLALVGILIYVFFRFE-------------WRFALAAILALLHDVIITLGFFSLF 181 (305)
T ss_pred eeeeEEC-cchHHHHHHH---HHHHHHHHHHHHHHhhheeee-------------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555 5677888764 344567777788888765432 3348889999999999999999999
Q ss_pred cccccchhhhHHHHHhhhccccceEehHHHHHHh---cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHH
Q 000762 691 GVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ---QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1296)
Q Consensus 691 G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~---~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~v 767 (1296)
|+++++ .+...-.-++|=.+||.+++.+|.||. .+..+..+.+..++.++-.-.+.|++|+.++.+.+.+-.-+.+
T Consensus 182 giE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fgg~~l 260 (305)
T COG0341 182 GIEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSL 260 (305)
T ss_pred heeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 999997 455555568899999999999999984 2566777899999999988889999999998887776666999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 000762 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDK 803 (1296)
Q Consensus 768 r~F~i~~a~av~~~~l~~lt~~palL~l~~~r~~~~ 803 (1296)
++|++..-+|++....-++.+-++++.+..+|++.+
T Consensus 261 ~~fa~~llvGii~gtySSifiA~pll~~~~~~~~~~ 296 (305)
T COG0341 261 KDFALALLVGIIAGTYSSIFIAAPLLLLLGKRREKK 296 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhc
Confidence 999999999999999999999999999888766543
No 77
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.82 E-value=1.5e-07 Score=112.03 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=121.9
Q ss_pred CCCeEEEEcccchHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHH
Q 000762 608 SKNLTLAFSSESSIEEELKREST-ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 608 ~~~~~i~~~~~~sl~~ei~~~~~-~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl 686 (1296)
|.++++...+. +...+.+... .-+...+++++++++|+++.++. +.+.+...++.++.+++.+|+
T Consensus 240 P~~~~i~~~~~--v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~------------~~~i~~iaL~~~~~v~~~lg~ 305 (417)
T PRK08343 240 PVKLDIEGSGS--VSPSLGEQFKKGSLIAGLLALLAVALVVFLRYRE------------PRIALPMVITSLSEVIIILGF 305 (417)
T ss_pred CCCeEEEEccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666543 3333333322 22334566666666776666543 222222223445677889999
Q ss_pred HHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchH
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (1296)
Q Consensus 687 ~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~ 766 (1296)
+.++|.++|+ ....-..+++|++||+.+++.++.+++.. .+.++++..+++++..+++.|++|++++|+.+.+.....
T Consensus 306 l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~ 383 (417)
T PRK08343 306 AALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGD 383 (417)
T ss_pred HHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999997 67777788999999999999988766432 267889999999999999999999999999887766677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 767 CRVFSMFAALAVLLDFLLQITAFVALI 793 (1296)
Q Consensus 767 vr~F~i~~a~av~~~~l~~lt~~palL 793 (1296)
+|.|++...+|++++.+++=-++--++
T Consensus 384 ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 384 LKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997666555544433
No 78
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=98.73 E-value=2.4e-07 Score=95.88 Aligned_cols=129 Identities=23% Similarity=0.417 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHHHHHhhccchhhhhhhhhccCC--CHHHHHHHHHHHhhHH
Q 000762 1145 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSV-VNLVMAVGIAVEFCVHITHAFSVSSG--DKNQRMKEALGTMGAS 1221 (1296)
Q Consensus 1145 s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSl-v~lviaiGisVDf~iHi~~~f~~~~~--~~~erv~~Al~~~G~p 1221 (1296)
.++.++..++.+.+.++..+|+.+++|++++.+.. +.-.+.+|+++|+..|+++++.+... +.++|+.+|+.+.|.+
T Consensus 5 ~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~~G~s 84 (153)
T PF12349_consen 5 RFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSRVGPS 84 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhHH
Confidence 35667777788888888889999999999999886 55558889999999999999987653 5689999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhC
Q 000762 1222 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA-LVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1222 Vl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~-iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
++.+. +|.+.++.+.++++.+..+.| .++.+ .+++.++..+.+.|++|++--
T Consensus 85 i~~t~-l~~~~af~~~~~~~~~~l~~F--c~faa~~l~~d~~l~~tff~avLsld~ 137 (153)
T PF12349_consen 85 ILLTS-LTEIVAFLIGAFSPVPALREF--CLFAALALLFDFLLQLTFFPAVLSLDL 137 (153)
T ss_pred HHHHH-HHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 799999998889998888876 55544 467889999999999999763
No 79
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.69 E-value=2.4e-07 Score=112.36 Aligned_cols=151 Identities=14% Similarity=0.133 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccce
Q 000762 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (1296)
Q Consensus 635 ~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~ 714 (1296)
..+++++++++|+++..|. .|+++.+...+.++..+|+++++|.++|+ ....--.|.+|++||.-
T Consensus 348 Agl~g~~~V~vfm~~~Yr~--------------~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaN 412 (506)
T COG0342 348 AGLIGLALVAVFMLLYYRL--------------AGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDAN 412 (506)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhccccc
Confidence 4466777777777766542 38888888889999999999999999998 55666677888899999
Q ss_pred EehHHHHHHh-cCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 715 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793 (1296)
Q Consensus 715 ~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~palL 793 (1296)
+++.+|.+++ +.+.+...|+..+++++..+|+=+.+||+++-.++..-..-++|-|++..++|++.+++.++++.=.++
T Consensus 413 VlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~ 492 (506)
T COG0342 413 VLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLL 492 (506)
T ss_pred EEeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999986 578999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhc
Q 000762 794 VFDFLRA 800 (1296)
Q Consensus 794 ~l~~~r~ 800 (1296)
.+..++.
T Consensus 493 ~~~~~~~ 499 (506)
T COG0342 493 NLLVGRR 499 (506)
T ss_pred HHHhccc
Confidence 8776554
No 80
>COG4258 Predicted exporter [General function prediction only]
Probab=98.56 E-value=2.8e-07 Score=108.07 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccc
Q 000762 632 DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGV 711 (1296)
Q Consensus 632 d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGv 711 (1296)
+......+...+++.+.++.+.||. ++..++++.+++.+.+..+.+.|+++|+ ...+.-.|++|+|+
T Consensus 647 ~la~~laga~alvl~la~a~rgwRr------------glrvllP~v~a~~~~~A~~a~aGvplnL-fhllal~LvlgvG~ 713 (788)
T COG4258 647 VLAGLLAGALALVLCLAVARRGWRR------------GLRVLLPSVLALGCGLAVLAMAGVPLNL-FHLLALVLVLGVGI 713 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHccc
Confidence 3334444444555556666666642 7888999999999999999999999997 67888889999999
Q ss_pred cceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 712 DNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1296)
Q Consensus 712 D~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p~vr~F~i~~a~av~~~~l~~lt~~pa 791 (1296)
||+..+-++=+ +..|-. .+-.++.++++||.++|..+.+|.+|.++.||+..+.|++.+|++..+..|.
T Consensus 714 nYalFfs~~~~------~~ae~l-----ttl~alala~ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlApL~mp~ 782 (788)
T COG4258 714 NYALFFSNAGD------PRAEPL-----TTLLALALAMLTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLAPLAMPD 782 (788)
T ss_pred chhhhhhcccC------CCCchH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 99988754331 111111 1556889999999999999999999999999999999999999887766553
No 81
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.46 E-value=3.4e-06 Score=95.77 Aligned_cols=157 Identities=13% Similarity=0.225 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhh
Q 000762 1119 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1198 (1296)
Q Consensus 1119 ~i~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~ 1198 (1296)
++.+..+..+++|+++|.+...+-|+... ++-+++...-=++.++|+|.++|+++|..++..+.+.+|.||++++-+.-
T Consensus 131 eL~~~~~~Al~~alv~I~iYV~~RFe~~~-a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvfD 209 (305)
T COG0341 131 ELARQGLLALLLALVGILIYVFFRFEWRF-ALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVFD 209 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeehHH-HHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHeeeccCCeEEEEh
Confidence 45677788888888888888777765544 76666666666778899999999999999999999999999999998875
Q ss_pred hhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000762 1199 AFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1273 (1296)
Q Consensus 1199 ~f~~~~-----~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs 1273 (1296)
|-++.. .+..|.+..|+..+..-.+.++ +|+++.+++|.+-.....+.|-+-|+ .-++.|...+.++-+.++.
T Consensus 210 RIREn~r~~~~~~~~~iin~si~qTlsRti~Ts-~ttll~~~~l~~fgg~~l~~fa~~ll-vGii~gtySSifiA~pll~ 287 (305)
T COG0341 210 RIRENLRKYRRETLREIINTSINQTLTRTINTS-VTTLLVVVALLLFGGGSLKDFALALL-VGIIAGTYSSIFIAAPLLL 287 (305)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCchHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Confidence 555432 2455888889888887777675 57777777776545466676643333 3357788888888888887
Q ss_pred hhCCC
Q 000762 1274 VFGPP 1278 (1296)
Q Consensus 1274 ~~gp~ 1278 (1296)
+++.+
T Consensus 288 ~~~~~ 292 (305)
T COG0341 288 LLGKR 292 (305)
T ss_pred HHHHh
Confidence 77654
No 82
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.25 E-value=1.8e-05 Score=96.35 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhh
Q 000762 1121 WRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF 1200 (1296)
Q Consensus 1121 ~~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f 1200 (1296)
.+..+....+++++|++++++.++ ..+++..+.+..-++-++|+|.++|.+|+.-++-+++++||++||--+-|..+.
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr--~~Gvia~ial~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ERI 419 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYR--LAGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERI 419 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHhhhhcccccEEeeHHH
Confidence 355666667788888888888887 557777777777778889999999999999999999999999999999999888
Q ss_pred hccC---CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 000762 1201 SVSS---GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1277 (1296)
Q Consensus 1201 ~~~~---~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp 1277 (1296)
+++. ++...++....+...+.|+-+. +||+++.++|.+-.+-.++-|-+.+ .+-++++++.++++-=.++.++-+
T Consensus 420 rEElr~G~s~~~ai~~G~~rAf~tI~DsN-~TTlia~~~L~~~GtG~vKGFA~Tl-~lGi~~smfta~~~tr~l~~~~~~ 497 (506)
T COG0342 420 REELRNGKSVLSAIDAGFKRAFSTILDSN-ATTLIAAAILFALGTGPVKGFAVTL-ILGILTSMFTAIPVTRLLLNLLVG 497 (506)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhc
Confidence 7663 4778889999999999999886 6999988888766655667664443 345788888888888777777754
Q ss_pred C
Q 000762 1278 P 1278 (1296)
Q Consensus 1278 ~ 1278 (1296)
.
T Consensus 498 ~ 498 (506)
T COG0342 498 R 498 (506)
T ss_pred c
Confidence 4
No 83
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=98.22 E-value=9.3e-06 Score=98.58 Aligned_cols=125 Identities=18% Similarity=0.299 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHhhccchhhhhhhhhccCCCHHHHHHHHHHHhhHHHHHHH
Q 000762 1148 SSAIILLVLTMIVVDLMGVMAILKIQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGI 1226 (1296)
Q Consensus 1148 ~~lii~l~i~~iiv~v~G~M~l~gI~Ln~v-Slv~lviaiGisVDf~iHi~~~f~~~~~~~~erv~~Al~~~G~pVl~g~ 1226 (1296)
.++.-++.+.+..+.-+|+-.++||.+|+. |-|.--+++|++||+.-.++|+|.+..+. .+++.+-|+++|.+|+.++
T Consensus 443 vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~-~~~~~~~lk~tG~Svl~ts 521 (1143)
T KOG1935|consen 443 VGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL-HEEMGELLKETGMSVLLTS 521 (1143)
T ss_pred hhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh-HHHHHHHHHHhCcchhHHH
Confidence 345455556666777789999999999987 56788899999999999999999887544 7999999999999999998
Q ss_pred HHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000762 1227 TLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1275 (1296)
Q Consensus 1227 tlTt~~G~~vLafs~s~if~~f~f~m~~~iv~~g~lh~Lv~LPvLLs~~ 1275 (1296)
+.+++.|+.-++-+-+..+.|= .--.+++.+.++..|++.|+++|+=
T Consensus 522 -inni~aF~~aallPIPALrsFc-lQaaIvl~fnfia~llifPAiisiD 568 (1143)
T KOG1935|consen 522 -INNILAFLMAALLPIPALRSFC-LQAAIVLTFNFIAVLLIFPAIISID 568 (1143)
T ss_pred -hhhHHHHHHHhhcCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999872 2234456778899999999999974
No 84
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=97.54 E-value=0.001 Score=83.75 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhcc--CCCHHHHHHHHHHHhhHHH
Q 000762 1145 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS--SGDKNQRMKEALGTMGASV 1222 (1296)
Q Consensus 1145 s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~--~~~~~erv~~Al~~~G~pV 1222 (1296)
.++.|+.-++++.+.++..+|++.++|++++.+.-+.--+.++|+||..--+++.-... ..+.++|+.+++.+.|.+|
T Consensus 89 K~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t~~~~~v~eRIa~~l~~vGpSI 168 (886)
T TIGR00920 89 KYILGIAGLFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTI 168 (886)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhccCCCCCHHHHHHHHHHHhccce
Confidence 46678888889999999999999999999998877777777888899998886652122 2368899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCC
Q 000762 1223 FSGITLTKLVGVIVLCFSRTEVFVVYYFQMYL-ALVLLGFLHGLVFLPVVLSVFGP 1277 (1296)
Q Consensus 1223 l~g~tlTt~~G~~vLafs~s~if~~f~f~m~~-~iv~~g~lh~Lv~LPvLLs~~gp 1277 (1296)
+.++ +|-.+.|.+=+++..+-.+.| .++. +.+++.++.=+.|+|++|++.+.
T Consensus 169 tlts-lte~l~F~vGtls~mPAV~~F--c~ya~vAVl~nyllQmTfF~A~LsL~~~ 221 (886)
T TIGR00920 169 TLDT-VVETLVIGVGTMSGVRRLEVL--CCFGCMSVLANYFVFMTFFPACLSLVLE 221 (886)
T ss_pred eHHH-HHHHHHHHHhccCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 688888888889999888886 5554 35678889999999999999874
No 85
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=95.40 E-value=0.0041 Score=65.55 Aligned_cols=96 Identities=27% Similarity=0.547 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCCCCCCHHHHHHHHHHHH-hhhhh-ccCC----hhHHhhHHhhccccccCCCCCcceEEEeecccCCCe
Q 000762 85 SKVQSLCPTITGNVCCTEDQFDTLRTQVQ-QAIPF-LVGC----PACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNL 158 (1296)
Q Consensus 85 ~~l~~~Cp~~~~~~CC~~~Q~~~l~~~~~-~~~~~-~~~C----paC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~ 158 (1296)
..|...|..+....||+.++.+.+..... .+..+ ..+| |.|.+=|.++.|-+-|||++..+ .. . ..+.
T Consensus 16 ~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~-~~--~---~~~~ 89 (167)
T PF03024_consen 16 PDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHW-QA--E---DRKT 89 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccccc-cc--C---CcCC
Confidence 34666899998899999999999998877 33332 2233 79999999999999999999999 21 1 1122
Q ss_pred eEEEEEEEEcchhchHHhhccccCcccCCC
Q 000762 159 TVDGIDYYITDTFGQGLYESCKDVKFGTMN 188 (1296)
Q Consensus 159 ~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~ 188 (1296)
.+..+- |=++|=+..|+.||+..+...+
T Consensus 90 ~~~~~P--LC~~~Cd~wf~aCk~d~tc~~~ 117 (167)
T PF03024_consen 90 RIRGVP--LCASFCDDWFEACKDDYTCGSN 117 (167)
T ss_dssp ------------------------------
T ss_pred ccCCCC--cCHHHHHHHHHHhhhHHhccCc
Confidence 355555 8899999999999999876554
No 86
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=92.60 E-value=0.033 Score=73.34 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=115.5
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Q 000762 621 IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIME 700 (1296)
Q Consensus 621 l~~ei~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~i~~~ 700 (1296)
..+............+.++.+.+|+.....++-- ++| +++-++.+.+.++--+|+|.++|+.+|. .+.
T Consensus 1010 fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~-------~~s----s~i~~~~~~~~~v~l~g~m~~~~I~~Na-vS~ 1077 (1201)
T KOG1933|consen 1010 FYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLD-------VDS----SLIMVLVDEMILVNLVGFMYLWGISLNA-VSL 1077 (1201)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccc-------ccc----ceeeeeehhhhhhhHHHHHHhhceeehh-hhh
Confidence 3343333333333344566666666655544431 333 4455667778888889999999999997 566
Q ss_pred HHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhhcccCchH--HHHHHHHHHHH
Q 000762 701 VIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITL-ASLSEVLAFAVGSFIPMPA--CRVFSMFAALA 777 (1296)
Q Consensus 701 v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~l-tslt~~~~F~~~~~s~~p~--vr~F~i~~a~a 777 (1296)
+--..-+||+|+...||+|.+.... +.+..+|..+++...|.+++- .++|...+-.++.+.+.-. +..|.++.++.
T Consensus 1078 vNlvm~vgi~vef~~hi~~sf~~s~-~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~ 1156 (1201)
T KOG1933|consen 1078 VNLVMSVGIAVEFCVHITHSFATSS-GPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIV 1156 (1201)
T ss_pred hhhhhhcchhhhHHHHhhcceeecc-CCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeehHHHHHH
Confidence 6677889999999999999887543 338899999999999998763 4566666666666655544 56667777776
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 000762 778 VLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 778 v~~~~l~~lt~~palL~l~~~r~ 800 (1296)
++-+.-- +.|+|.++++.++..
T Consensus 1157 l~~a~hG-liflpvlls~~g~~~ 1178 (1201)
T KOG1933|consen 1157 LVGALHG-LIFLPVLLSLLGPES 1178 (1201)
T ss_pred HHHheee-eeehhhHHHhcCCcc
Confidence 6655555 999999999987543
No 87
>COG4709 Predicted membrane protein [Function unknown]
Probab=62.83 E-value=29 Score=36.78 Aligned_cols=26 Identities=4% Similarity=0.115 Sum_probs=16.6
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcccC
Q 000762 1076 LNRQIDYVNSMRAAREFSSRVSDSLQ 1101 (1296)
Q Consensus 1076 l~~~~d~i~al~~~r~ia~~~~~~~~ 1101 (1296)
.++.++.++.+.+-+++|+++..+.+
T Consensus 40 GksE~EI~~~LG~P~eiA~ei~s~~~ 65 (195)
T COG4709 40 GKSEEEIAKDLGDPKEIAAEILSERG 65 (195)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHHHcc
Confidence 34566677777777777777654433
No 88
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=57.75 E-value=32 Score=36.77 Aligned_cols=22 Identities=5% Similarity=0.261 Sum_probs=14.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhc
Q 000762 1077 NRQIDYVNSMRAAREFSSRVSD 1098 (1296)
Q Consensus 1077 ~~~~d~i~al~~~r~ia~~~~~ 1098 (1296)
.+.+|.++.+-+-+++|+++.+
T Consensus 41 ~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 41 KSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred CCHHHHHHHcCCHHHHHHHHHH
Confidence 3556667777677777777653
No 89
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=50.27 E-value=3.6 Score=53.56 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=82.0
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHH-HHHHHhcccc-chHHHHHHHHHHHhhccchhhhhhhhhcc---------------
Q 000762 1141 ITTCSFWSSAIILLVLTMIVVDLM-GVMAILKIQL-NAVSVVNLVMAVGIAVEFCVHITHAFSVS--------------- 1203 (1296)
Q Consensus 1141 ll~~s~~~~lii~l~i~~iiv~v~-G~M~l~gI~L-n~vSlv~lviaiGisVDf~iHi~~~f~~~--------------- 1203 (1296)
+..+|+..++++...+.+.+..+. +.-..+||.+ -.+-.+..++.|||++|..--+...|.++
T Consensus 344 i~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~ 423 (999)
T KOG3664|consen 344 IYTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFF 423 (999)
T ss_pred EecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccc
Confidence 334777777777666665554433 2223334332 23455666778999999998887777211
Q ss_pred ----CC--CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhC
Q 000762 1204 ----SG--DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA-LVLLGFLHGLVFLPVVLSVFG 1276 (1296)
Q Consensus 1204 ----~~--~~~erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f~f~m~~~-iv~~g~lh~Lv~LPvLLs~~g 1276 (1296)
+. .......-.+.....+++.+. +|+..++....-++...++- |++++. .+..+..-=..++|+..|+.-
T Consensus 424 ~~l~~~~~ll~~~~~l~~~h~~~smfvt~-~~t~~~f~~~~ssp~~~lrc--fg~~A~~~v~~n~~~~v~~lPa~~SI~~ 500 (999)
T KOG3664|consen 424 LELSDHTELLENVFALTLRHASFSMFVTS-LTTACAFYANYSSPVIVLRC--FGIFAGLTVVFNYLLVVLWLPASVSIAL 500 (999)
T ss_pred cccccchhHHHHHHhhhhhhhhHHHHHHH-HHHHhhhhhccccchHHHHH--hccccccccccccceeEEeccchhhhhh
Confidence 00 112333444555556777776 68888998888888666664 355543 234454444667888666665
Q ss_pred CCCccc
Q 000762 1277 PPSRCM 1282 (1296)
Q Consensus 1277 p~~~~~ 1282 (1296)
......
T Consensus 501 ~~~~~~ 506 (999)
T KOG3664|consen 501 RLFATR 506 (999)
T ss_pred cccccc
Confidence 444333
No 90
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=47.39 E-value=4.5e+02 Score=32.46 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 000762 1209 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY-YFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1279 (1296)
Q Consensus 1209 erv~~Al~~~G~pVl~g~tlTt~~G~~vLafs~s~if~~f-~f~m~~~iv~~g~lh~Lv~LPvLLs~~gp~~ 1279 (1296)
...+.-.++.+...+.|.++..+.++....+.....+... ...++ +.++++.+.| .++|.++.-+|-.+
T Consensus 350 ~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~G-~~lp~~~~k~~~DP 419 (449)
T TIGR00400 350 DFFKVILREICVSILVGAILASVNFLRIVFFQGKLLIAFVVSSSLF-VSLTVAKILG-GLLPIVAKLLKLDP 419 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHcCCCh
Confidence 4455566777777777766555555555444222111111 11122 2233333333 35799998887543
No 91
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=45.42 E-value=6.8e+02 Score=30.93 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHHhhccchhhhhhhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcccCc-hhHHHHHHH
Q 000762 1174 LNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVI-VLCFSRT-EVFVVYYFQ 1251 (1296)
Q Consensus 1174 Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~~~~erv~~Al~~~G~pVl~g~tlTt~~G~~-vLafs~s-~if~~f~f~ 1251 (1296)
=|+.|....++.=|++.+-. +.....+--.++.+...+.|.++..++|.. +..+... .+--+. ..
T Consensus 326 GN~GsQ~~tvivRaLa~~~i------------~~~~~~~vl~rE~~vG~~~G~vl~~~~~~~~~~~~~~~~~l~~~v-~~ 392 (451)
T COG2239 326 GNAGTQAATVIVRALALGEI------------SLKNVFRVLLKELGVGLLLGLVLAIIIGLRVPAWLYGGLLLGLIV-AL 392 (451)
T ss_pred CcHHHHHHHHHHHhhccccc------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH-HH
Confidence 36666655555545443322 223445566778888888888766556653 3333332 111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000762 1252 MYLALVLLGFLHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1252 m~~~iv~~g~lh~Lv~LPvLLs~~gp~ 1278 (1296)
.+++.+++|.+. .+++|.++.-+|-.
T Consensus 393 al~~~~~~A~l~-G~~iP~ll~kl~~D 418 (451)
T COG2239 393 ALLLNILFAALV-GVLIPILLKKLGLD 418 (451)
T ss_pred HHHHHHHHHHHh-hchHHHHHHHcCCC
Confidence 112223333333 46789988877643
No 92
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=41.13 E-value=1.8e+02 Score=35.36 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccch
Q 000762 1115 EQYLDIW-RTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFC 1193 (1296)
Q Consensus 1115 eqy~~i~-~~~~~~l~lal~~iflv~~ll~~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~ 1193 (1296)
+.|+.++ ..++..+.+.+++-.+.++-+-+.-+.+++++ .+++++.+...|. +..+-+.+++|++ |||
T Consensus 202 ~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~-----s~~g~l~l~~~W~-----~~~~~l~~~v~~s-DfC 270 (418)
T cd07912 202 SLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVF-----SVCGLFALIISWL-----SLGLYLASAVALS-DFC 270 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-----HHHHHHHHHHHHH-----HHHHHHHHHHhhh-hhh
Confidence 3444433 33343444444433333333334435555433 3334444444442 2234455566654 666
Q ss_pred hh
Q 000762 1194 VH 1195 (1296)
Q Consensus 1194 iH 1195 (1296)
+-
T Consensus 271 ~~ 272 (418)
T cd07912 271 VD 272 (418)
T ss_pred cC
Confidence 53
No 93
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=39.47 E-value=68 Score=29.62 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccccc
Q 000762 297 YIILVSLFFGWGFFHRKRERSRSFRMKPLVN 327 (1296)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1296)
..+++++++.|+..+.+|+|++...++++..
T Consensus 41 ~~iFil~VilwfvCC~kRkrsRrPIYrPvI~ 71 (94)
T PF05393_consen 41 CGIFILLVILWFVCCKKRKRSRRPIYRPVIG 71 (94)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCccccccc
Confidence 3444566666766666777777777766543
No 94
>PTZ00370 STEVOR; Provisional
Probab=37.40 E-value=68 Score=36.41 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=7.3
Q ss_pred HHHHHHHhhcccC
Q 000762 751 SEVLAFAVGSFIP 763 (1296)
Q Consensus 751 t~~~~F~~~~~s~ 763 (1296)
+++++++.++|-|
T Consensus 244 gtAAtaAsaaF~P 256 (296)
T PTZ00370 244 GTAASAASSAFYP 256 (296)
T ss_pred chHHHHHHHhhcc
Confidence 4455565665555
No 95
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=32.68 E-value=57 Score=29.24 Aligned_cols=48 Identities=15% Similarity=0.474 Sum_probs=29.1
Q ss_pred hHHHHHhhCCCCC---CCCCCCHHHH---------HHHHHHHHhhh-----hhccCChhHHhhHH
Q 000762 83 LSSKVQSLCPTIT---GNVCCTEDQF---------DTLRTQVQQAI-----PFLVGCPACLRNFL 130 (1296)
Q Consensus 83 ~~~~l~~~Cp~~~---~~~CC~~~Q~---------~~l~~~~~~~~-----~~~~~CpaC~~N~~ 130 (1296)
....+....-++. +..||-.... +..+.+++.++ .++.-||+|..+|+
T Consensus 21 ~~~l~~~~g~~~~~~~~~~CCG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~~lr 85 (85)
T PF02754_consen 21 LRKLLNKLGIEVVIPENQQCCGAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPSCYMQLR 85 (85)
T ss_pred HHHHHHHcCceeeecCCCCCCChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChhHHHhhC
Confidence 3444454444432 4689976554 33444444444 47789999999874
No 96
>PRK02935 hypothetical protein; Provisional
Probab=32.08 E-value=1.8e+02 Score=28.03 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=34.6
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000762 625 LKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (1296)
Q Consensus 625 i~~~~~~d~~~~~is~llm~l~~~~~l~~~~~~~~~~v~Sk~~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~ 696 (1296)
+|+.-.-....+.+++++|.+- +.++. | .++..+.++.-.+++++|.+++.|.|.-.+-
T Consensus 9 INkiRt~aL~lvfiG~~vMy~G--iff~~----------~-~~~m~ifm~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 9 INKIRTFALSLVFIGFIVMYLG--IFFRE----------S-IIIMTIFMLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhcc----------c-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4443333334455666666444 33222 2 3344445667778888899999999985553
No 97
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.94 E-value=1.4e+02 Score=29.13 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000762 667 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (1296)
Q Consensus 667 ~l~l~~vl~v~~sv~~s~Gl~~~~G~~~~~ 696 (1296)
++..+.++.-+++++++.+++.|.|.-.+-
T Consensus 37 ~im~ifmllG~L~~l~S~~VYfwIGmlStk 66 (114)
T PF11023_consen 37 IIMVIFMLLGLLAILASTAVYFWIGMLSTK 66 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 344445566688899999999999986543
No 98
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=29.71 E-value=8e+02 Score=28.22 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhccccceEehHHHHHHhcCCCCHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000762 675 LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVL 754 (1296)
Q Consensus 675 ~v~~sv~~s~Gl~~~~G~~~~~i~~~v~pflvlgIGvD~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~si~ltslt~~~ 754 (1296)
.+.++.-+++=+-...|+|+=. +.++|.|-+.-|+.-..-..--......+++.++...+.+.+...++..+-+-..+
T Consensus 142 gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~~~~~~~~~~~~~r~~~~v~~~ell~la 219 (305)
T COG3301 142 GVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTRENPHSTESKFLHRFEIPVVVTELLLLA 219 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444667888743 56788777766664332221111111223355666778888999999999988888
Q ss_pred HHHhh-cccCchHHHHHHHHHH
Q 000762 755 AFAVG-SFIPMPACRVFSMFAA 775 (1296)
Q Consensus 755 ~F~~~-~~s~~p~vr~F~i~~a 775 (1296)
+|+.+ .+.+..+.|.+.-..+
T Consensus 220 ~f~~l~~~G~~a~~~a~~~al~ 241 (305)
T COG3301 220 AFFVLLSLGGVAAARALATALA 241 (305)
T ss_pred HHHHHHHhCcHHHHHHHHHHHh
Confidence 88865 5667777776654433
No 99
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.25 E-value=18 Score=40.33 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHH-HHHHHHHHHHHHHHHHHhcccc
Q 000762 1125 LINLAIAIGAVFVVCLITTCSFWSSAII-LLVLTMIVVDLMGVMAILKIQL 1174 (1296)
Q Consensus 1125 ~~~l~lal~~iflv~~ll~~s~~~~lii-~l~i~~iiv~v~G~M~l~gI~L 1174 (1296)
+.++++.+++|.+|++++-|.+..++=. ++..+|+++-+..+..+.|..|
T Consensus 55 l~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~L 105 (381)
T PF05297_consen 55 LYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTL 105 (381)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3344455555555555555777665522 2223444444555555666554
No 100
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=26.33 E-value=1e+03 Score=30.13 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 000762 1133 GAVFVVCLITTCSFWSSAIILLVLTMIVVDL 1163 (1296)
Q Consensus 1133 ~~iflv~~ll~~s~~~~lii~l~i~~iiv~v 1163 (1296)
+...++..+++.||.+++|.+++.+++.+.+
T Consensus 127 vp~~i~i~v~~~~w~aalIllit~PlIPlfM 157 (559)
T COG4988 127 VPLLILIAIFFFNWAAALILLITAPLIPLFM 157 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444556679999999888877776543
No 101
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=26.08 E-value=4e+02 Score=26.05 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=36.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhcc
Q 000762 1144 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS 1203 (1296)
Q Consensus 1144 ~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~ 1203 (1296)
++++..++=.+...++...+...+.++|++-+....+...+.. ++||+--.++.++...
T Consensus 43 ~~~~~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGf-lGvd~ir~~~~~~i~k 101 (107)
T TIGR01594 43 GKFKRKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGF-VGVDKIREFAKRFINK 101 (107)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheee-ccHHHHHHHHHHHHHh
Confidence 5666666544444444556667788888886554433333322 6788888888777654
No 102
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=25.72 E-value=1e+03 Score=26.97 Aligned_cols=44 Identities=7% Similarity=0.146 Sum_probs=24.5
Q ss_pred hhhHHHHH--hhhccccceEehHHHHHHh------------cCCCCHHHHHHHHHHHh
Q 000762 698 IMEVIPFL--VLAVGVDNMCILVHAVKRQ------------QLELPLETRISNALVEV 741 (1296)
Q Consensus 698 ~~~v~pfl--vlgIGvD~~~~l~~~~~~~------------~~~~~~~~~i~~~l~~~ 741 (1296)
...++|.. ++|=...-.-+-.++|.++ .-|.+++||....++++
T Consensus 123 ~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~a 180 (250)
T PF03649_consen 123 PRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIRRA 180 (250)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46788863 4444444444555666542 13677888865544443
No 103
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=24.57 E-value=3.7e+02 Score=26.41 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 000762 763 PMPACRVFSMFAALAVLLDFL 783 (1296)
Q Consensus 763 ~~p~vr~F~i~~a~av~~~~l 783 (1296)
+.|..++.++..++++.+..+
T Consensus 89 ~~p~~~~a~~~l~~~~~~~l~ 109 (111)
T PF09946_consen 89 SYPEYTDAGFVLAFSLAFMLI 109 (111)
T ss_pred cChhHhHHHHHHHHHHHHHHH
Confidence 677888877776666655443
No 104
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=24.49 E-value=1.2e+03 Score=27.25 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=14.6
Q ss_pred CeEEEEcccchHHHHHHhhhcchhHH
Q 000762 610 NLTLAFSSESSIEEELKRESTADAIT 635 (1296)
Q Consensus 610 ~~~i~~~~~~sl~~ei~~~~~~d~~~ 635 (1296)
++-.++...+++.+++.+.....+..
T Consensus 76 d~G~S~~~~~~V~~~i~~~lp~Tl~L 101 (306)
T PRK15081 76 DFGTSMVSRRPVSEEIASRFMPTLWL 101 (306)
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34445554556777777655544443
No 105
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.99 E-value=3.1e+02 Score=29.96 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=35.9
Q ss_pred HHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhccCCC----HHHHHHHHHHHhhHHHHHHH
Q 000762 1165 GVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGD----KNQRMKEALGTMGASVFSGI 1226 (1296)
Q Consensus 1165 G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~~~~~----~~erv~~Al~~~G~pVl~g~ 1226 (1296)
.++.++||++++..+.+.++..-++.|---.-... .+..++ .+++-..|..-.+.|++.|-
T Consensus 60 ~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~-~~~~~~~~~~~~~~~~~ai~PLa~PllaGP 124 (203)
T PF01914_consen 60 LILNFFGISLPAFRIAGGIILFLIALEMLFGSPSS-EKSSPDEKEEAKDAEDIAIVPLAIPLLAGP 124 (203)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcc-cccccchhhhhcccccceecccchhhccCh
Confidence 46778999999999998888887776522111111 001111 11233445666677887763
No 106
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=23.63 E-value=3.3e+02 Score=26.18 Aligned_cols=58 Identities=7% Similarity=0.110 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhccchhhhhhhhhc
Q 000762 1144 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV 1202 (1296)
Q Consensus 1144 ~s~~~~lii~l~i~~iiv~v~G~M~l~gI~Ln~vSlv~lviaiGisVDf~iHi~~~f~~ 1202 (1296)
++++..++=.+.-.++...+...+.++|++-+....+...+.. ++||+.-.++.++..
T Consensus 41 ~~~~r~llea~lCg~lal~~~~~L~~~gl~~~~a~~~g~~IGf-lGvd~ir~~~~r~~~ 98 (100)
T PF05106_consen 41 GSWRRRLLEALLCGLLALFARSLLEYFGLPQSLAVFIGGFIGF-LGVDKIRELIRRFIN 98 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhheeeeec-cCHHHHHHHHHHHhh
Confidence 5666666644444555556666778889887766554444332 678988888877654
No 107
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=23.57 E-value=5.9e+02 Score=35.15 Aligned_cols=23 Identities=30% Similarity=0.053 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHH
Q 000762 727 ELPLETRISNALVEVGPSITLAS 749 (1296)
Q Consensus 727 ~~~~~~~i~~~l~~~g~si~lts 749 (1296)
|.-..++...|.+..+.+++++.
T Consensus 510 g~v~~D~~~~T~~al~~t~l~al 532 (1109)
T PRK10929 510 GKVTQDHFSLTLRTVFWSILVAS 532 (1109)
T ss_pred CCcccccccccHHHHHHHHHHHh
Confidence 44455566666666666665554
No 108
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=22.20 E-value=1.2e+03 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCc
Q 000762 1259 LGFLHGLVFLPVVLSVFGPPSR 1280 (1296)
Q Consensus 1259 ~g~lh~Lv~LPvLLs~~gp~~~ 1280 (1296)
++.+.++-++|.+=..||-...
T Consensus 445 ~s~il~iGllP~fE~~F~~~T~ 466 (700)
T COG1480 445 LSGILVLGLLPYFEALFGLLTT 466 (700)
T ss_pred HHHHHHHHHHHHHHHHhccCch
Confidence 3345557789999999885433
No 109
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=22.18 E-value=9.4e+02 Score=27.90 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=12.4
Q ss_pred chHHHHHHhhhcchhHHHHHH
Q 000762 619 SSIEEELKRESTADAITIVIS 639 (1296)
Q Consensus 619 ~sl~~ei~~~~~~d~~~~~is 639 (1296)
+++.+++.+.....+...+.+
T Consensus 84 ~~V~~~i~~~l~~Tl~l~~~a 104 (306)
T PRK09471 84 YSVNDLVASSFPVSAKLGAAA 104 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 577788877665554443333
No 110
>PRK10352 nickel transporter permease NikB; Provisional
Probab=21.67 E-value=1.3e+03 Score=26.95 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=14.8
Q ss_pred CeEEEEcccchHHHHHHhhhcchhHH
Q 000762 610 NLTLAFSSESSIEEELKRESTADAIT 635 (1296)
Q Consensus 610 ~~~i~~~~~~sl~~ei~~~~~~d~~~ 635 (1296)
++-.++...+.+.+++.+.....+..
T Consensus 79 d~G~S~~~g~~V~~~i~~~l~~Tl~L 104 (314)
T PRK10352 79 DFGISFATQRPVLDDLLNFLPATLEL 104 (314)
T ss_pred CCCccCCCCCcHHHHHHHHHHHHHHH
Confidence 44445554566777776665544443
No 111
>PHA00736 hypothetical protein
Probab=20.82 E-value=2.7e+02 Score=24.23 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 000762 1253 YLALVLLGFLHGLVF 1267 (1296)
Q Consensus 1253 ~~~iv~~g~lh~Lv~ 1267 (1296)
|-..+++|++.|+++
T Consensus 59 wgi~vifgliag~vl 73 (79)
T PHA00736 59 WGITVIFGLIAGLVL 73 (79)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445678899988864
No 112
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=20.24 E-value=1.3e+02 Score=36.70 Aligned_cols=14 Identities=50% Similarity=1.118 Sum_probs=8.5
Q ss_pred HHHHHHHHhhccchh
Q 000762 1180 VNLVMAVGIAVEFCV 1194 (1296)
Q Consensus 1180 v~lviaiGisVDf~i 1194 (1296)
+-+..++|+| |||+
T Consensus 235 ~~la~aV~~S-DFC~ 248 (406)
T PF04906_consen 235 LELAAAVGLS-DFCV 248 (406)
T ss_pred HHHHhccchh-hhcc
Confidence 4455666665 6665
Done!