Query 000762
Match_columns 1296
No_of_seqs 343 out of 2892
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 15:54:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000762.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_535-538//hhsearch_pdb/000762hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qnt_A Niemann-PICK C1-like pr 1.0 1 1 553.8 14.1 235 44-285 5-263 (265)
2 3gkj_A Niemann-PICK C1 protein 1.0 1 1 531.0 8.8 214 50-268 2-231 (232)
3 2v50_A Multidrug resistance pr 1.0 1 1 340.6 38.8 607 607-1280 317-1032(1052)
4 4dx5_A Acriflavine resistance 1.0 1 1 338.2 48.1 609 608-1281 318-1035(1057)
5 3ne5_A Cation efflux system pr 1.0 1 1 332.4 35.2 601 607-1278 322-1048(1054)
6 3aqp_A Probable secdf protein- 1.0 1 1 306.9 43.7 471 608-1282 251-730 (741)
7 2v50_A Multidrug resistance pr 1.0 1 1 181.8 20.8 175 608-799 851-1030(1052)
8 4dx5_A Acriflavine resistance 1.0 1 1 176.4 24.7 179 607-801 851-1034(1057)
9 3ne5_A Cation efflux system pr 1.0 1 1 170.5 15.9 178 607-800 857-1049(1054)
10 3aqp_A Probable secdf protein- 1.0 1 1 162.9 21.3 175 608-800 550-727 (741)
No 1
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens}
Probab=1.00 E-value=1 Score=553.78 Aligned_cols=235 Identities=32% Similarity=0.623 Sum_probs=211.9
Q ss_pred CCCCCCCCCEEECCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC---CC-CCCCHHHHHHHHHHH
Q ss_conf 656887767045445799989-------9745689999999999256889983198998---99-889988899999999
Q 000762 44 GEVKHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GN-VCCTEDQFDTLRTQV 112 (1296)
Q Consensus 44 ~~~~~~~~~C~~~g~c~~~~~-------~~~~~c~~~~~~~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~Q~~~l~~~~ 112 (1296)
-+.+|++|+|+|||+||++++ ++++||+||++|++++++++++|+++||+++ +. +|||++|+++|++||
T Consensus 5 ~~~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl 84 (265)
T 3qnt_A 5 YTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASL 84 (265)
T ss_dssp SCCCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 66756788206706668875434454679633589998587989899999998693855579888778999999999988
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--CCEEEEEEEEEECCHHCHHHHHCCCCCCCCCCCHH
Q ss_conf 8652110389248955973010344587888643898612248--87017999999831001378521325866677825
Q 000762 113 QQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS--NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTR 190 (1296)
Q Consensus 113 ~~~~~~~~~CpaC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~--~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~ 190 (1296)
++++++|+|||||++||++|||+||||||||+||+||++.+.+ ++..|+|+||||+++||+++|||||||+||+||++
T Consensus 85 ~~a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~ 164 (265)
T 3qnt_A 85 SITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATL 164 (265)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCB
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 87787757491789999987548778977036264686023578876648999999877886667544207544555642
Q ss_pred HHHHCCC--CCC--CHHHHHHHHCCCCCCCCCCCCEEEEECCCCC---CCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf 7751279--976--8898999620147899999961588427999---998854488887687899----9885556799
Q 000762 191 ALDFIGG--GAQ--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAP---ELSGMIPMNVSAYSCADG----SLGCSCGDCT 259 (1296)
Q Consensus 191 am~~~gg--~a~--~~~~~~~flG~~~~~~~~~~P~~i~f~~~~~---~~~~~~~~~~~~~~C~~~----~~~CsC~dC~ 259 (1296)
|||+||| ||+ ||++||+|||+++ |++|||||||++++. .+.+|+|||..+++|||. .++|||+||+
T Consensus 165 Am~l~cG~~gA~~Cn~~~wl~flG~~~---n~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~ 241 (265)
T 3qnt_A 165 AVGTMCGVYGSALCNAQRWLNFQGDTG---NGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCA 241 (265)
T ss_dssp TTGGGSTTSCSSSCCHHHHHHHHTCTT---TTCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCG
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCC---CCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEECCCCH
T ss_conf 666306876767779999999736566---89788678742567776677776478888858888888999988566532
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 99989899999999998547406776
Q 000762 260 SSPVCSSTAPPPHKSSSCSVKMGSLN 285 (1296)
Q Consensus 260 ~~~sC~~~~~~~~~~~~~~~~~~~~~ 285 (1296)
+ |||.+|++|+.+.+ |+|++++
T Consensus 242 ~--sCp~~p~~p~~~~p--~~I~gld 263 (265)
T 3qnt_A 242 A--SCPAIARPQALDST--FYLGQMP 263 (265)
T ss_dssp G--GCCC-------------------
T ss_pred H--HCCCCCCCCCCCCC--CEEEEEE
T ss_conf 2--26999989899997--1787552
No 2
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A*
Probab=1.00 E-value=1 Score=530.99 Aligned_cols=214 Identities=35% Similarity=0.700 Sum_probs=195.7
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 7670454457999899745689999999999256889983198998---9988998889999999986521103892489
Q 000762 50 EEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GNVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1296)
Q Consensus 50 ~~~C~~~g~c~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~Cp~~~---~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1296)
.++|+|||+||++++++++||+||++|++++++++++|+++||+++ +.+|||++|+++|++||++++++|+|||||+
T Consensus 2 ~~~C~~yg~Cg~~~~~~~l~C~~~~~a~~~~~~~~~~L~~~Cp~~~~~~~~~CC~~~Ql~~L~~nl~~a~~il~rCPaC~ 81 (232)
T 3gkj_A 2 AQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCF 81 (232)
T ss_dssp -CCCSEEEEEEEEETTEEEEEECCSCCEECCGGGHHHHHHHCGGGCSTTCEESCCHHHHHHHHHTTHHHHHHHTTCHHHH
T ss_pred CCCCEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 97205657658889996525999986878898999999986918446888877999999999998887887607682799
Q ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECC----C--CCCEEEEEEEEEECCHHCHHHHHCCCCCCCCCCCHHHHHHCCC-CC
Q ss_conf 559730103445878886438986122----4--8870179999998310013785213258666778257751279-97
Q 000762 127 RNFLNLFCELTCSPNQSLFINVTSVSK----V--SNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG-GA 199 (1296)
Q Consensus 127 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~----~--~~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg-~a 199 (1296)
+||++|||+|||||+||+||+||++.+ . +++..|+|+||||+++||+++|||||||+||+||++||++||| ||
T Consensus 82 ~Nf~~l~C~~TCSP~QS~Fl~vt~t~~~~d~~~~~~~~~V~ev~y~v~~~fa~~~YdSCkdV~~p~t~~~Am~l~CG~ga 161 (232)
T 3gkj_A 82 YNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDA 161 (232)
T ss_dssp HHHHHHHHHHHHCTTHHHHEEEEEEEEEECTTTCCEEEEEEEEEEEECHHHHHHHHHHHTTCBCTTSSSBTHHHHSSSCT
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
T ss_conf 99999764877897602626368513355655667765389999998778877776653075345566346776437787
Q ss_pred C--CHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 6--889899962014789999996158842799999885448888768789----99885556799999898999
Q 000762 200 Q--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCAD----GSLGCSCGDCTSSPVCSSTA 268 (1296)
Q Consensus 200 ~--~~~~~~~flG~~~~~~~~~~P~~i~f~~~~~~~~~~~~~~~~~~~C~~----~~~~CsC~dC~~~~sC~~~~ 268 (1296)
+ ||++||+|||+++ ||+|||||||++++...+||+|||..+++||+ +.++|||+||++ |||.+|
T Consensus 162 ~~C~~~~wl~flG~~~---ng~sPfqInf~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~--sCp~~p 231 (232)
T 3gkj_A 162 DACQATNWIEYMFNKD---NGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSI--VCGPKP 231 (232)
T ss_dssp TTCCHHHHHHHHTCGG---GSSSSSEEEEEECSSCBTTBCCBCCCCCCTTSCSBTTBCCCCGGGCGG--GC----
T ss_pred CCCCHHHHHHHHCCCC---CCCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCEECCCCHH--HCCCCC
T ss_conf 8889999999726566---897985777541688876565898888677888789999877765432--358997
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=1.00 E-value=1 Score=340.60 Aligned_cols=607 Identities=12% Similarity=0.078 Sum_probs=360.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69986999815101999997520001589999999999999987089988742211221024578999999999999998
Q 000762 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 607 ~~~~~~i~~~~~~si~~ei~~~~~~d~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl 686 (1296)
.++++++.+.++.+ +.+++....-...+.++++++++++++.+++++ .+++.++.+++++++++|+
T Consensus 317 lp~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~------------~~li~~~~ip~s~~~~~~~ 382 (1052)
T 2v50_A 317 MPQGMKVVYPYDTT--PVVSASIHEVVKTLGEAILLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFGV 382 (1052)
T ss_dssp SCTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 89981999971526--999999999999999999999999999985179------------9999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87606300103466887776540226557157899973--1799999999999987667999999999999885105680
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1296)
Q Consensus 687 ~~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~--~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1296)
+.++|+++|. ++.+...+++|++|||++|+++++++. .++.+..+++.++.+++++|+++|++|++++|+.+++++.
T Consensus 383 l~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~ 461 (1052)
T 2v50_A 383 LAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGG 461 (1052)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCH
T ss_pred HHHHCCCHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9996787789-999999999775505659984599999986599989999999999999999999999999999998557
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHH
Q ss_conf ---6899999999999999999999999999988642000258652332246888678777878887317---9999987
Q 000762 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGL---LARYMKE 838 (1296)
Q Consensus 765 ---p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~---l~~~~~~ 838 (1296)
+.++.||+..++|+++++++++++.|+++++..++....+.. .+... .....+.. +.+++++
T Consensus 462 ~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~y~~ 529 (1052)
T 2v50_A 462 STGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHG------EHKGG------FFGWFNRMFLSTTHGYER 529 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCH------HHHHHHHHHHHHHHHHHH
T ss_conf 177899999999999999999999999999999864567664321------12101------456777899999999999
Q ss_pred HCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCHHHH---HHHHHHHHCCCCCC--E
Q ss_conf 71110124542232688999999999765404588885443---------4789862535---99999853048998--9
Q 000762 839 VHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQG---YFNNISEHLRIGPP--L 904 (1296)
Q Consensus 839 ~ya~~l~~~~~r~~vi~if~~~~~~si~~~~~i~~gld~~~---------~lP~dS~l~~---y~~~i~~~l~~g~p--v 904 (1296)
. ..+.+++ |..+++++++++++++++..+++.++.+.. .+|+++.+.+ ..+.+++.+..-|. +
T Consensus 530 ~-l~~~l~~--~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~~p~~~V 606 (1052)
T 2v50_A 530 G-VASILKH--RAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSV 606 (1052)
T ss_dssp H-HHHHHHH--CSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred H-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9-9999855--799999999999999999997797228888887799999839999999999999999999984887607
Q ss_pred EEEEE--CCCCCCHHHHHHHHC-CCCCC--------CCCHHHHHHHHHC-CCCCCCC--CC-------------------
Q ss_conf 99996--478991323111000-23336--------8401699998710-3788864--56-------------------
Q 000762 905 YFVVK--NYNYSSESRQTNQLC-SISQC--------DSNSLLNEISRAS-LIPQSSY--IA------------------- 951 (1296)
Q Consensus 905 ~~Vv~--~~~~~~~~~~q~~ic-~~~~c--------~~~sl~~~l~~~~-~~~~~s~--i~------------------- 951 (1296)
.-+.. +........+...+. ....- ....+.+++.+.. +.|+... ..
T Consensus 607 ~~v~s~~G~~~~~~~~~~~~i~v~l~~~~~r~~~~~~~~~i~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~~~i~i~~ 686 (1052)
T 2v50_A 607 SSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVFELAKRAQMHFFSFKDAMVFAFAPPSVLELGNATGFDLFLQD 686 (1052)
T ss_dssp EEEEEEESCCSSCCSTTEEEEEEEECCTTSCCSSTTSHHHHHHHHHHHSSSCSSSEEEEECCCSCC-----CCCCEEEEE
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 99999826777889975279999972678656645789999999999862079847998337654577888865899997
Q ss_pred --CCC----CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHH
Q ss_conf --862----225999997505466564334689887899999999999998889888657787544-5687777999854
Q 000762 952 --KPA----ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPSTI 1024 (1296)
Q Consensus 952 --~~~----~swlddf~~~l~~~~~~ccr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~~~ 1024 (1296)
.+. ..+.++..+.++...+ .-.. ...+.....+ -+.-. +......|. +.+
T Consensus 687 ~~g~d~~~L~~~a~~l~~~l~~~~g-v~~v--~~~~~~~~p~-------------------~~i~id~~~a~~~Gl-s~~ 743 (1052)
T 2v50_A 687 QAGVGHEVLLQARNKFLMLAAQNPA-LQRV--RPNGMSDEPQ-------------------YKLEIDDEKASALGV-SLA 743 (1052)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTSCTT-EEEE--EESSCCCEEC-------------------CBCEECHHHHTTTTC-CHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC-EEEC--CCCCCCCCEE-------------------EEEEECHHHHHHCCC-CHH
T ss_conf 8999999999999999999960999-2742--4666679705-------------------999988999988699-999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC--------------------------E------E---------CCCCCCCE
Q ss_conf 89864899871089841027988875442--------------------------0------0---------24888862
Q 000762 1025 QFKEKLPWFLNALPSASCAKGGHGAYTNS--------------------------V------D---------LKGYENGI 1063 (1296)
Q Consensus 1025 ~f~~~l~~fl~~~p~~~c~~gg~~~Y~~~--------------------------v------~---------~~~~~~~~ 1063 (1296)
+..+.+...+...+......++. .|... + + +..++...
T Consensus 744 ~i~~~l~~~~~g~~~~~~~~~~~-~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~VpL~~va~i~~~~~p~~i~r~n~~~ 822 (1052)
T 2v50_A 744 DINSTVSIAWGSSYVNDFIDRGR-VKRVYLQGRPDARMNPDDLSKWYVRNDKGEMVPFNAFATGKWEYGSPKLERYNGVP 822 (1052)
T ss_dssp HHHHHHHHHHSCEEEEEEEETTE-EEEEEEEECGGGSSSGGGGTTCEEECSSSCEEEGGGGEECCCCEECSEECBCSSSB
T ss_pred HHHHHHHHHHCCCEEEEEEECCE-EEEEEEEECHHHCCCHHHHHCCEEECCCCCEEEHHHCEEEEEECCCCEEEECCCEE
T ss_conf 99999999958922149997891-99999996846646999880572488999899953717999945886189608806
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79879998303566232399999999999997100258601113003112788999999999999999999999999983
Q 000762 1064 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT 1143 (1296)
Q Consensus 1064 I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~i~~~~~~~v~~ys~~~v~~eqy~~i~~~~~~~l~lal~~Ifiv~~ill 1143 (1296)
.........+..+..+..+.++ +..+++ +.|+.+...|.. ++......+....+++++++|++++++.|
T Consensus 823 --~i~V~~~~~~~~~~~~~~~~i~---~~~~~l--p~g~~~~~~G~~----~~~~~~~~~~~~~~~~a~~~i~l~l~~~f 891 (1052)
T 2v50_A 823 --AMEILGEPAPGLSSGDAMAAVE---EIVKQL--PKGVGYSWTGLS----YEERLSGSQAPALYALSLLVVFLCLAALY 891 (1052)
T ss_dssp --EEEEEEEECTTCCSCTTTTTHH---HHGGGS--CTTEEEEECTHH----HHTTTTCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred --EEEEEEEECCCCCHHHHHHHHH---HHHHHC--CCCCEEEECCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --8999998479988899999999---998638--998389955648----99999998799999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---CCHHHHHHHHHHHHHH
Q ss_conf 0346999999999999999999999852545268999999987751130101226656037---9989999999999559
Q 000762 1144 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGA 1220 (1296)
Q Consensus 1144 ~s~~~~lii~l~i~~iiv~v~G~M~l~GI~Ln~vSlv~lvi~iGIsVDf~iHi~~~f~~~~---~~~~erv~~Al~~~G~ 1220 (1296)
+|++.++++++++++.+++.++.|+++|+++|..+++++++.+|++|||+||+++++++.+ .+..+++.+|..++++
T Consensus 892 ~s~~~~l~il~~ip~~~~g~~~~~~~~g~~l~~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~r 971 (1052)
T 2v50_A 892 ESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLR 971 (1052)
T ss_dssp TCSSTTHHHHTHHHHHHTTHHHHHHHTTCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 04688999999988999999999999779702899999999999977275999543889987699989999999887077
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999988998988875302574---13799999999999999999999999999873089974
Q 000762 1221 SVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 1280 (1296)
Q Consensus 1221 sVl~g~tlT~~iGi~vLafs~s---~if~~f~f~~~~~ivi~g~lh~LilLPvlLs~~gp~~~ 1280 (1296)
||++++ +|+++|+++|+|+.+ +....+. ....+.++++++.+|+++|+++.++++..+
T Consensus 972 pil~t~-~tt~~g~~pl~~~~~~g~~~~~~~~-~~~~~Gl~~s~~~~l~~~P~l~~~~~~~~~ 1032 (1052)
T 2v50_A 972 PIVMTS-LAFILGVVPLAISTGAGSGSQHAIG-TGVIGGMVTATVLAIFWVPLFYVAVSTLFK 1032 (1052)
T ss_dssp HHHHHH-HHHHTTSHHHHTCCSTTTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHH-HHHHHHHHHHHHCCCCCHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999-9999999999853798726542459-999999999999999999999999986101
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=1.00 E-value=1 Score=338.21 Aligned_cols=609 Identities=12% Similarity=0.075 Sum_probs=363.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99869998151019999975200015899999999999999870899887422112210245789999999999999988
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~si~~ei~~~~~~d~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl~ 687 (1296)
++++++.+.++.+ +.+++....-...+.++.+++++++++.+++++ .+++.++.++++++++++++
T Consensus 318 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~------------~~li~~~~ip~~~~~~~~~l 383 (1057)
T 4dx5_A 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1057)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 9981999970655--999999999999999999999999999986069------------99999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHH-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 7606300103466887776540226557157899973-17-9999999999998766799999999999988510568--
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1296)
Q Consensus 688 ~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~-~~-~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~-- 763 (1296)
.++|.++|. ++.+...+++|++|||++++++++++. .+ +.+..+++.++.++.++|+++|++|++++|+.+++++
T Consensus 384 ~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~ 462 (1057)
T 4dx5_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1057)
T ss_dssp HHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHH
T ss_pred HHHCCCHHH-HHHHHHHHHEECCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 995776899-9999999974000356488589999999865999899999999999999999999999999999971672
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHH
Q ss_conf -068999999999999999999999999999886420002586523322468886787778788873---1799999877
Q 000762 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKP---GLLARYMKEV 839 (1296)
Q Consensus 764 -~p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~ 839 (1296)
.+.++.||+..++|++++++.++++.|+++.+..++....... +... ....... ..+.+++++.
T Consensus 463 ~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~y~~~ 530 (1057)
T 4dx5_A 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHG-------EGKK-----GFFGWFNRMFEKSTHHYTDS 530 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCS-------TTCC-----SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999999864566654443-------3210-----57787878999999999999
Q ss_pred CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCC---------CCCCCCCHHHH---HHHHHHHHCC--CCCCEE
Q ss_conf 111012454223268899999999976540458888544---------34789862535---9999985304--899899
Q 000762 840 HATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLR--IGPPLY 905 (1296)
Q Consensus 840 ya~~l~~~~~r~~vi~if~~~~~~si~~~~~i~~gld~~---------~~lP~dS~l~~---y~~~i~~~l~--~g~pv~ 905 (1296)
..+.+++ |..+++++++++++++++..+++.++-+. ..+|.++.+.+ ..+.+++.+. ..|.+.
T Consensus 531 -l~~~lr~--~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~ 607 (1057)
T 4dx5_A 531 -VGGILRS--TGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVE 607 (1057)
T ss_dssp -HHHHHHS--CTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEE
T ss_pred -HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf -9999843--7999999999999999999967961588888887999998699999999999999999998645898717
Q ss_pred EEEE--CCCCCCHHHHHHHHC-CCC--------CCCCCHHHHHHHHHC-CCCCCCCC-----------------------
Q ss_conf 9996--478991323111000-233--------368401699998710-37888645-----------------------
Q 000762 906 FVVK--NYNYSSESRQTNQLC-SIS--------QCDSNSLLNEISRAS-LIPQSSYI----------------------- 950 (1296)
Q Consensus 906 ~Vv~--~~~~~~~~~~q~~ic-~~~--------~c~~~sl~~~l~~~~-~~~~~s~i----------------------- 950 (1296)
-+.. +.+......+...+- ... .-+...+.+++.+.. +.|+....
T Consensus 608 ~v~s~~G~~~~~~~~n~~~i~V~L~~~~~r~~~~~s~~~i~~~lr~~l~~~p~~~~~~~~~~~~~~~g~~~~~~i~l~~~ 687 (1057)
T 4dx5_A 608 SVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQ 687 (1057)
T ss_dssp EEEEEESCSTTCCCTTEEEEEEEECCGGGSCSGGGSHHHHHHHHHHHHTTSTTCEEEEECCCSCGGGCCSSEEEEEEEEC
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEC
T ss_conf 99999645678899744899999716887677679999999999998720898089973377656778888856999957
Q ss_pred CCCC----CCHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 6862----2259999975054665643-34689887899999999999998889888657787544-5687777999854
Q 000762 951 AKPA----ASWLDDFLVWISPEAFGCC-RKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPSTI 1024 (1296)
Q Consensus 951 ~~~~----~swlddf~~~l~~~~~~cc-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~~~ 1024 (1296)
..+. ..+.++..+.++...+- - . -..+.... .+ +-..-. +......+. +.+
T Consensus 688 ~g~d~~~L~~~a~~l~~~l~~~~gv-~~~--v~~~~~~~-~~------------------~l~i~id~~~a~~~Gl-s~~ 744 (1057)
T 4dx5_A 688 AGLGHEKLTQARNQLLAEAAKHPDM-LTS--VRPNGLED-TP------------------QFKIDIDQEKAQALGV-SIN 744 (1057)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCTTT-EEE--EEESSCCC-EE------------------EEEEEECHHHHHHHTC-CHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCC-EEC--CCCCCCCC-CC------------------EEEEEECHHHHHHCCC-CHH
T ss_conf 8989999999999999999709992-541--65466689-71------------------4999988999987699-999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEC----------------CCCCCC-----------------EE------E
Q ss_conf 89864899871089841027988875442002----------------488886-----------------27------9
Q 000762 1025 QFKEKLPWFLNALPSASCAKGGHGAYTNSVDL----------------KGYENG-----------------IV------Q 1065 (1296)
Q Consensus 1025 ~f~~~l~~fl~~~p~~~c~~gg~~~Y~~~v~~----------------~~~~~~-----------------~I------~ 1065 (1296)
+..+.+...+...+......++. .|...+.+ ...++. .| .
T Consensus 745 ~v~~~l~~~~~g~~~~~~~~~~~-~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~i~~~~~~~ 823 (1057)
T 4dx5_A 745 DINTTLGAAWGGSYVNDFIDRGR-VKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLP 823 (1057)
T ss_dssp HHHHHHHHHHHCEEEEEEEETTE-EEEEEEEECGGGSSSGGGGGGCEEECTTSCEEEGGGTEEEEEEEECSEEEEETTEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCE-EEEEEEECCHHHCCCHHHHCCEEEECCCCCEEEHHHCEEEEEECCCCEEEEECCCE
T ss_conf 99999999958925379966998-99999845943449999870229789999899954718999835886389737918
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf 87999830356623239999999999999710025860111300311278899999999999999999999999998303
Q 000762 1066 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 1145 (1296)
Q Consensus 1066 as~f~~~~~~l~~~~d~i~al~~~r~ia~~i~~~~~~~v~~ys~~~v~~eqy~~i~~~~~~~l~lal~~Ifiv~~ill~s 1145 (1296)
.........+..+..+..+ ..+++.+.+ +.|+++...|. .++......+....+++++++|++++++.|+|
T Consensus 824 ~v~v~~~~~~~~~~~~~~~---~~~~~~~~l--p~g~~~~~~G~----~~~~~~~~~~~~~~~~~a~~~i~l~L~~~f~s 894 (1057)
T 4dx5_A 824 SMEILGQAAPGKSTGEAME---LMEQLASKL--PTGVGYDWTGM----SYQERLSGNQAPSLYAISLIVVFLCLAALYES 894 (1057)
T ss_dssp EEEEEEEECTTCCHHHHHH---HHHHHHHTS--CTTEEEEECHH----HHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHH---HHHHHHHHC--CCCCEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997489999899999---999877429--89877985572----89999999889999999999999999999962
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC----CCCHHHHHHHHHHHHHHH
Q ss_conf 4699999999999999999999985254526899999998775113010122665603----799899999999995599
Q 000762 1146 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS----SGDKNQRMKEALGTMGAS 1221 (1296)
Q Consensus 1146 ~~~~lii~l~i~~iiv~v~G~M~l~GI~Ln~vSlv~lvi~iGIsVDf~iHi~~~f~~~----~~~~~erv~~Al~~~G~s 1221 (1296)
++.++++++++++.+++.++.|+++|+++|..+++.+++.+|++|||+||++.++++. +.+..+++.+|...+++|
T Consensus 895 ~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rp 974 (1057)
T 4dx5_A 895 WSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRP 974 (1057)
T ss_dssp SSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 89899999998899999999999977985199999999999998717089835976998875999999999999886768
Q ss_pred HHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999988998988875302574---137999999999999999999999999998730899744
Q 000762 1222 VFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1281 (1296)
Q Consensus 1222 Vl~g~tlT~~iGi~vLafs~s---~if~~f~f~~~~~ivi~g~lh~LilLPvlLs~~gp~~~~ 1281 (1296)
|++++ +|+++|+++|+|+.+ +.++.+.. ...+.++++++.+|+++|+++.++++..+.
T Consensus 975 il~t~-ltt~~g~~pl~~~~g~g~~~~~~~g~-~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~~ 1035 (1057)
T 4dx5_A 975 ILMTS-LAFILGVMPLVISTGAGSGAQNAVGT-GVMGGMVTATVLAIFFVPVFFVVVRRRFSR 1035 (1057)
T ss_dssp HHHHH-HHHHHHTHHHHTCCSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH-HHHHHHHHHHHHHCCCCHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999-99999999999845896266515499-999999999999999999999999874211
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=1.00 E-value=1 Score=332.37 Aligned_cols=601 Identities=9% Similarity=0.057 Sum_probs=359.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69986999815101999997520001589999999999999987089988742211221024578999999999999998
Q 000762 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 607 ~~~~~~i~~~~~~si~~ei~~~~~~d~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl 686 (1296)
-++++++.+.++.+ +.+++....-...+.++++++++++++.++++ ..+++.++.+++++++++++
T Consensus 322 lp~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~------------~~~li~~~~ip~~~~~~~~~ 387 (1054)
T 3ne5_A 322 LPEGVEIVTTYDRS--QLIDRAIDNLSGKLLEEFIVVAVVCALFLWHV------------RSALVAIISLPLGLCIAFIV 387 (1054)
T ss_dssp SCTTEEEEEEEETH--HHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSH------------HHHHHHHTTTHHHHHHHHHH
T ss_pred CCCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 89983999985465--99999999999999999999999999984555------------88999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHC-C-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876063001034668877765402265571578999731-7-----------9999999999998766799999999999
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-----------ELPLETRISNALVEVGPSITLASLSEVL 754 (1296)
Q Consensus 687 ~~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~~-~-----------~~~~~~~i~~~l~~~g~si~ltslt~~~ 754 (1296)
+.++|.++|. ++.+...+++|++|||++++++++++.. + +.+..+++.++.++++++++.|++|+++
T Consensus 388 l~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s~ltt~~ 466 (1054)
T 3ne5_A 388 MHFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITL 466 (1054)
T ss_dssp HHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHH-HHHHHHHHHHHHEECCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9981877889-999999998562031739873189999861134444444456788999999999999999999999999
Q ss_pred HHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 988510568---06899999999999999999999999999988642000258652332246888678777878887317
Q 000762 755 AFAVGSFIP---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGL 831 (1296)
Q Consensus 755 ~F~~~~~s~---~p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~ 831 (1296)
+|+.+.+++ .+.++.||+..++|+++++++.+++.|+++.+..++....+.. .....+
T Consensus 467 ~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~-------------------~~~~~~ 527 (1054)
T 3ne5_A 467 SFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESS-------------------NPLNRF 527 (1054)
T ss_dssp TTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC-------------------------------CHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------------CHHHHH
T ss_conf 9998887065488999988999999999999999999999999971366653223-------------------378999
Q ss_pred HHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCC---------CCCCCCCHHHH---HHHHHHHHCC
Q ss_conf 99999877111012454223268899999999976540458888544---------34789862535---9999985304
Q 000762 832 LARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLR 899 (1296)
Q Consensus 832 l~~~~~~~ya~~l~~~~~r~~vi~if~~~~~~si~~~~~i~~gld~~---------~~lP~dS~l~~---y~~~i~~~l~ 899 (1296)
+.+++++. ..+.++++ ..+++++++++++++++..+++.++-+. ..+|+++.+.+ ..+.+++.+.
T Consensus 528 ~~~~y~~~-~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~g~~~v~~~~p~Gtsle~t~~~~~~ie~~l~ 604 (1054)
T 3ne5_A 528 LIRVYHPL-LLKVLHWP--KTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIM 604 (1054)
T ss_dssp HHHHHHHH-HHHHTSST--HHHHHHHHHHHHHTHHHHTTCCBCSSCCCCCSEEEECCBCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999-99998527--9999999999999999997679458988788759999943999999999999999999985
Q ss_pred CCCCEEEEEE--CCC--CCCHH-HHHHHHC-CCC-------CCCCCHHHHHHHHHCCCCCCCC-CCCC------------
Q ss_conf 8998999996--478--99132-3111000-233-------3684016999987103788864-5686------------
Q 000762 900 IGPPLYFVVK--NYN--YSSES-RQTNQLC-SIS-------QCDSNSLLNEISRASLIPQSSY-IAKP------------ 953 (1296)
Q Consensus 900 ~g~pv~~Vv~--~~~--~~~~~-~~q~~ic-~~~-------~c~~~sl~~~l~~~~~~~~~s~-i~~~------------ 953 (1296)
.-|.+.-+.. +.. ..++. .....+- ... +-+.+++.+++.+..+.|+... ...|
T Consensus 605 ~~p~V~~v~s~~G~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~l~~~lr~~~~~p~~~~~~~~~~~~~~~~~~~g~ 684 (1054)
T 3ne5_A 605 SVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGI 684 (1054)
T ss_dssp TSTTEEEEEEEEECCSSTTCCCCTTCBCEEEEECCTTTSCSSCCHHHHHHHHHHHSCCTTCBCCEECHHHHHHHHHHTSC
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 19891899997157777788888643899999634565355689999999999971899843420355311100036788
Q ss_pred -----------C----CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf -----------2----225999997505466564334689887899999999999998889888657787544-568777
Q 000762 954 -----------A----ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLL 1017 (1296)
Q Consensus 954 -----------~----~swlddf~~~l~~~~~~ccr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~ 1017 (1296)
. ....++..+.++...+. -.. ..+..... + +-..-. +.....
T Consensus 685 ~~~i~i~l~G~d~~~L~~~a~~l~~~l~~~~gv-~~v--~~~~~~~~-~------------------~l~i~id~~~a~~ 742 (1054)
T 3ne5_A 685 KSPIGIKVSGTVLADIDAMAEQIEEVARTVPGV-ASA--LAERLEGG-R------------------YINVEINREKAAR 742 (1054)
T ss_dssp SSSEEEEEECSCHHHHHHHHHHHHHHHHHSTTC-SEE--EECCSSCE-E------------------EEEEEECHHHHHT
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC-EEE--ECCCCCCC-E------------------EEEEEECHHHHHH
T ss_conf 876799996889999999999999998569992-673--44666798-0------------------5999989999988
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--------------------------EECCC-------CCCCEE
Q ss_conf 799985489864899871089841027988875442--------------------------00248-------888627
Q 000762 1018 KDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNS--------------------------VDLKG-------YENGIV 1064 (1296)
Q Consensus 1018 ~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~Y~~~--------------------------v~~~~-------~~~~~I 1064 (1296)
.|. +.++..+.+...+...+-.....|+. .|... +.+.. .....|
T Consensus 743 ~Gl-s~~~v~~~l~~~~~g~~~~~~~~~~~-~~~v~vr~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~i 820 (1054)
T 3ne5_A 743 YGM-TVADVQLFVTSAVGGAMVGETVEGIA-RYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSML 820 (1054)
T ss_dssp TTC-CHHHHHHHHHTTTSCCEEEEEEETTE-EEEEEEECCGGGSSSHHHHTTCEEECTTCCEEEGGGTEEEEEEEECSCE
T ss_pred CCC-CHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEECHHHCCCHHHHHCCEEECCCCCEEEHHHCEEEEEECCCCEE
T ss_conf 498-99999999999838951058987998-9999999673544898987122768899989995480899983587618
Q ss_pred ------EEEEEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------987999830356623239999999999999-7100258601113003112788999999999999999999999
Q 000762 1065 ------QASSFRTYHTPLNRQIDYVNSMRAAREFSS-RVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFV 1137 (1296)
Q Consensus 1065 ------~as~f~~~~~~l~~~~d~i~al~~~r~ia~-~i~~~~~~~v~~ys~~~v~~eqy~~i~~~~~~~l~lal~~Ifi 1137 (1296)
......... . ..+..+..+++++..+ +...+.|+++...| .+++...........+++++++|++
T Consensus 821 ~~~~~~~~~~v~~~~-~---~~~~~~~~~~i~~~~~~~~~~p~g~~~~~~G----~~~~~~~~~~~~~~~~~~al~li~l 892 (1054)
T 3ne5_A 821 KTENARPTSWIYIDA-R---DRDMVSVVHDLQKAIAEKVQLKPGTSVAFSG----QFELLERANHKLKLMVPMTLMIIFV 892 (1054)
T ss_dssp EEETTEEEEEEEEEC-C---SSCHHHHHHHHHHHHHHHCCCCTTCEEEEEE----HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred EEECCEEEEEEEEEE-C---CCCHHHHHHHHHHHHHHCCCCCCCCEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987791799999981-8---9998999999999998428998983899674----5899999999999999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC--------------
Q ss_conf 999983034699999999999999999999985254526899999998775113010122665603--------------
Q 000762 1138 VCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-------------- 1203 (1296)
Q Consensus 1138 v~~ill~s~~~~lii~l~i~~iiv~v~G~M~l~GI~Ln~vSlv~lvi~iGIsVDf~iHi~~~f~~~-------------- 1203 (1296)
++++.++|++.++++++++++.+++.+|.|+++|+++|..+++.+++.+|++|||+||++.++.+.
T Consensus 893 ~L~~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~ 972 (1054)
T 3ne5_A 893 LLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFS 972 (1054)
T ss_dssp HHHHHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCC
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999807999999999998999999999999879830999999999999999532368999999998643210023558
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79989999999999559999998899898887530257413---7999999999999999999999999998730899
Q 000762 1204 SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1278 (1296)
Q Consensus 1204 ~~~~~erv~~Al~~~G~sVl~g~tlT~~iGi~vLafs~s~i---f~~f~f~~~~~ivi~g~lh~LilLPvlLs~~gp~ 1278 (1296)
+.+..+++.+|..++++||++++ +|+++|+++|+|+.+.. ++.+.. ..++.++++++.+|+++|+++.+++..
T Consensus 973 g~~~~~Ai~~a~~~~~rpil~t~-ltti~g~~pl~~~~g~g~~~~~~l~~-~~~~Gl~~s~~~tl~v~P~l~~~~~~~ 1048 (1054)
T 3ne5_A 973 EQKLDEALYHGAVLRVRPKAMTV-AVIIAGLLPILWGTGAGSEVMSRIAA-PMIGGMITAPLLSLFIIPAAYKLMWLH 1048 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCCSTTHHHHHHTTH-HHHHHHHHHHHHHHHHTHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999887474899999-99999999999625897577555799-999699999999999999999999973
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.00 E-value=1 Score=306.89 Aligned_cols=471 Identities=14% Similarity=0.159 Sum_probs=320.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986999815101999997520001-589999999999999987089988742211221024578999999999999998
Q 000762 608 SKNLTLAFSSESSIEEELKRESTAD-AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 608 ~~~~~i~~~~~~si~~ei~~~~~~d-~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl 686 (1296)
|.++++.+.. ++..++.+.+..+ .....++++++++++++.++ + ..++.+++.+++++++++|+
T Consensus 251 P~~~~~~~~~--~vg~~l~~~~~~~~~~a~~i~~~lv~l~l~l~~r-~------------~~~li~~~~l~~~i~~~~~~ 315 (741)
T 3aqp_A 251 PVPLKVAEIR--AIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG-P------------HLGLVASLGLLYTSALILGL 315 (741)
T ss_dssp CCCCEEEEEE--EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-H------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 8862688754--0687899999999999999999999999999981-3------------78999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 87606300103466887776540226557157899973-17999999999999876679999999999998851056806
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1296)
Q Consensus 687 ~~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~p 765 (1296)
++++|.++|+ ++...+.+++|++|||.+|++++++++ +++.+.++++.++++++++|++.+++|++++|+.+.+.+.+
T Consensus 316 l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~ 394 (741)
T 3aqp_A 316 LSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATG 394 (741)
T ss_dssp HHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9998778159-999999999999983420458999999985999999999999999999999999999999999997056
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 89999999999999999999999999998864200025865233224688867877787888731799999877111012
Q 000762 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (1296)
Q Consensus 766 ~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 845 (1296)
.+|.||+..++|++++++.++++.|+++.+..++...++. . . +.+....++.
T Consensus 395 ~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~-~----~-----------------------~~~~~~~~l~ 446 (741)
T 3aqp_A 395 PVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPP-M----W-----------------------LVDPRFNFMG 446 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-C----C-----------------------CCCCCCSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C----C-----------------------CCCCHHHHHH
T ss_conf 6326999999999999999999999999998416777886-4----2-----------------------1020206975
Q ss_pred CCCEEEEHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 45422326889999999997654--0458888544347898625359999985304899899999647899132311100
Q 000762 846 LWGVKIAVISLFVAFTLASIALC--TRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQL 923 (1296)
Q Consensus 846 ~~~~r~~vi~if~~~~~~si~~~--~~i~~gld~~~~lP~dS~l~~y~~~i~~~l~~g~pv~~Vv~~~~~~~~~~~q~~i 923 (1296)
++ ..+++++++++++++++. +.++.+ . .+.+|.++.+.+++ +. +.
T Consensus 447 ~r---~~~~~i~~vl~~~~~~~~~~~~~~~~----------------~-----~f~Gg~~i~v~~~~-~~-~~------- 493 (741)
T 3aqp_A 447 PA---RYVTAATLLLAALAAGVVFAKGFNYS----------------I-----DFTGGTAYTLRAEP-NV-EV------- 493 (741)
T ss_dssp TH---HHHHHHHHHHHHHHHHHHHHHTCCCC----------------H-----HHHCEEEEEEEECT-TC-CH-------
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHCCCCCC----------------E-----ECCCCCEEEEEECC-CC-CH-------
T ss_conf 40---79999999999999999865247752----------------2-----62898579999789-99-99-------
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02333684016999987103788864568622259999975054665643346898878999999999999988898886
Q 000762 924 CSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 1003 (1296)
Q Consensus 924 c~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~ccr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1296)
+.+.+.+++. . . | .+..
T Consensus 494 --------~~l~~~l~~~------------------------g--~-------------~-~~~~--------------- 510 (741)
T 3aqp_A 494 --------ETLRRFLEEK------------------------G--F-------------P-GKEA--------------- 510 (741)
T ss_dssp --------HHHHHHHHTT------------------------T--S-------------C-SSSC---------------
T ss_pred --------HHHHHHHHHC------------------------C--C-------------C-CCCH---------------
T ss_conf --------9999999865------------------------9--9-------------9-9842---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEECCCCCCHHHHH
Q ss_conf 57787544568777799985489864899871089841027988875442002488886279879998303566232399
Q 000762 1004 CKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYV 1083 (1296)
Q Consensus 1004 ~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~Y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i 1083 (1296)
..+.+ .. +.+ + +. ++....... +.++..
T Consensus 511 ------------------~v~~~--------g~-~~~----~---------------~~-----~~~v~~~~~-~~~~~~ 538 (741)
T 3aqp_A 511 ------------------VITQV--------QA-PTA----A---------------YR-----EFLVKLPPL-SDERRL 538 (741)
T ss_dssp ------------------EEEEC----------------------------------CE-----EEEEEESCC-CHHHHH
T ss_pred ------------------HHHHC--------CC-CCC----C---------------CE-----EEEEEECCC-CHHHHH
T ss_conf ------------------34110--------67-876----7---------------55-----899980799-999999
Q ss_pred HHHHHHHHHHHHHHCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999710025860111300311278899999999999999999999999998303469999999999999999
Q 000762 1084 NSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDL 1163 (1296)
Q Consensus 1084 ~al~~~r~ia~~i~~~~~~~v~~ys~~~v~~eqy~~i~~~~~~~l~lal~~Ifiv~~ill~s~~~~lii~l~i~~iiv~v 1163 (1296)
+..+..+ +.+.. .+.+ ..++--+....+.+.....+.+++++|++++++.| |++.++++++++++.++.+
T Consensus 539 ~l~~~l~---~~~~~-~~~~-----~~~vG~~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~ 608 (741)
T 3aqp_A 539 ELERLFA---SELKA-TVLA-----SETVGPAIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIV 608 (741)
T ss_dssp HHHHHHH---HHSSS-CCCE-----EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHCCC-CCEE-----EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999---76587-7607-----99735889999999899999999999999999999-8999899999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999852545268999999987751130101226656037-----9989999999999559999998899898887530
Q 000762 1164 MGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1238 (1296)
Q Consensus 1164 ~G~M~l~GI~Ln~vSlv~lvi~iGIsVDf~iHi~~~f~~~~-----~~~~erv~~Al~~~G~sVl~g~tlT~~iGi~vLa 1238 (1296)
+|+|+++|+++|..+++.+++.+|++|||++|+.++++++. .+.++++.+|+.++|+|+++++ +|+++|+++|+
T Consensus 609 ~g~l~l~g~~l~~~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Ts-ltt~~g~~~L~ 687 (741)
T 3aqp_A 609 AGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTS-LTTLLPILALL 687 (741)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 99999991671699999999999996466388449999999744799999999999999999999999-99999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 25741379999999999999999999999999987308997441
Q 000762 1239 FSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 1282 (1296)
Q Consensus 1239 fs~s~if~~f~f~~~~~ivi~g~lh~LilLPvlLs~~gp~~~~~ 1282 (1296)
++.++.++.|.+.+ ...++++++++++++|+++.+++++.++.
T Consensus 688 ~~g~~~~~~~g~~~-~~Gl~~~~~~sl~l~Pal~~~~~~~~~~~ 730 (741)
T 3aqp_A 688 FLGGSVLRDFALAI-FVGIFVGTYSSIYVVSALVVAWKNRRKAQ 730 (741)
T ss_dssp HHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 95458789999999-99999999999999999999960123456
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=1.00 E-value=1 Score=181.77 Aligned_cols=175 Identities=15% Similarity=0.099 Sum_probs=149.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998699981510199999752000158-9999999999999987089988742211221024578999999999999998
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 608 ~~~~~i~~~~~~si~~ei~~~~~~d~~-~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl 686 (1296)
++++++.+.|+.. +..+. ..++. .+.++++++++++.+.+++++ ..+..++.++++++++++.
T Consensus 851 p~g~~~~~~G~~~---~~~~~-~~~~~~~~~~a~~~i~l~l~~~f~s~~------------~~l~il~~ip~~~~g~~~~ 914 (1052)
T 2v50_A 851 PKGVGYSWTGLSY---EERLS-GSQAPALYALSLLVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLA 914 (1052)
T ss_dssp CTTEEEEECTHHH---HTTTT-CCCSHHHHHHHHHHHHHHHHHHTTCSS------------TTHHHHTHHHHHHTTHHHH
T ss_pred CCCCEEEECCHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 9983899556489---99999-987999999999999999999980468------------8999999988999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 87606300103466887776540226557157899973-1799999999999987667999999999999885105680-
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (1296)
Q Consensus 687 ~~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~-~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~- 764 (1296)
+.++|.+++. .+.+...+++|++|||.+|+++++++. .++.+..+++.++.++.+.|+++|++|+++||+.+++++.
T Consensus 915 ~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~ 993 (1052)
T 2v50_A 915 TSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGA 993 (1052)
T ss_dssp HHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCST
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9997797028-999999999999772759995438899876999899999998870777999999999999999853798
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --68999999999999999999999999999886420
Q 000762 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1296)
Q Consensus 765 --p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr 799 (1296)
+..+.||+..++|++++.++.+++.|+++.+..++
T Consensus 994 g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 994 GSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7265424599999999999999999999999999861
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=1.00 E-value=1 Score=176.41 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=152.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69986999815101999997520001589999999999999987089988742211221024578999999999999998
Q 000762 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 607 ~~~~~~i~~~~~~si~~ei~~~~~~d~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl 686 (1296)
.++++++.+.|+ .++..+....-...+.++++++++++.+.+++++ .++..++.+++++++++|.
T Consensus 851 lp~g~~~~~~G~---~~~~~~~~~~~~~~~~~a~~~i~l~L~~~f~s~~------------~~l~~l~~i~~~~~~~~~~ 915 (1057)
T 4dx5_A 851 LPTGVGYDWTGM---SYQERLSGNQAPSLYAISLIVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLA 915 (1057)
T ss_dssp SCTTEEEEECHH---HHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTCSS------------THHHHHTTHHHHHHHHHHH
T ss_pred CCCCCEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 989877985572---8999999988999999999999999999996289------------8999999988999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 87606300103466887776540226557157899973--179999999999998766799999999999988510568-
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 763 (1296)
Q Consensus 687 ~~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~--~~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~- 763 (1296)
+.++|.+++. .+.+...+++|++|||.+++++++++. .++.+..+++.++..+.+.|+++|++|+++||+.+++++
T Consensus 916 l~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~g 994 (1057)
T 4dx5_A 916 ATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTG 994 (1057)
T ss_dssp HHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCS
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9997798519-999999999999871708983597699887599999999999988676899999999999999998458
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --06899999999999999999999999999988642000
Q 000762 764 --MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (1296)
Q Consensus 764 --~p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~~ 801 (1296)
.+.++.||+..++|+++++++++++.|+++.+..++..
T Consensus 995 ~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~ 1034 (1057)
T 4dx5_A 995 AGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFS 1034 (1057)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9626651549999999999999999999999999987421
No 9
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=1.00 E-value=1 Score=170.54 Aligned_cols=178 Identities=10% Similarity=0.072 Sum_probs=147.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69986999815101999997520001589999999999999987089988742211221024578999999999999998
Q 000762 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1296)
Q Consensus 607 ~~~~~~i~~~~~~si~~ei~~~~~~d~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl 686 (1296)
.++++++.+.|+.....+.. ..-...+.++.+++++++.+.++++ ..++..++.+++++++++|.
T Consensus 857 ~p~g~~~~~~G~~~~~~~~~---~~~~~~~~~al~li~l~L~~~f~S~------------~~~l~il~~ip~~~~g~~~~ 921 (1054)
T 3ne5_A 857 LKPGTSVAFSGQFELLERAN---HKLKLMVPMTLMIIFVLLYLAFRRV------------GEALLIISSVPFALVGGIWL 921 (1054)
T ss_dssp CCTTCEEEEEEHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHTCCH------------HHHHHHHTTSHHHHHHHHHH
T ss_pred CCCCCEEEECCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 98983899674589999999---9999999999999999999998079------------99999999998999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8760630010346688777654022655715789997317------------9999999999998766799999999999
Q 000762 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL------------ELPLETRISNALVEVGPSITLASLSEVL 754 (1296)
Q Consensus 687 ~~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~~~------------~~~~~~~i~~~l~~~g~si~ltslt~~~ 754 (1296)
+.++|.+++. .+.+...+++|++|||.+++++++++..+ +.+..+++.++..+.+.|+++|++|+++
T Consensus 922 l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltti~ 1000 (1054)
T 3ne5_A 922 LWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIA 1000 (1054)
T ss_dssp HHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998798309-999999999999995323689999999986432100235589989999999988747489999999999
Q ss_pred HHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98851056---80689999999999999999999999999998864200
Q 000762 755 AFAVGSFI---PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 755 ~F~~~~~s---~~p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~ 800 (1296)
||+.++++ ..+.++.||+..++|+++++++++++.|+++.+..++.
T Consensus 1001 g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~~ 1049 (1054)
T 3ne5_A 1001 GLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHR 1049 (1054)
T ss_dssp HHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999996258975775557999996999999999999999999999734
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.00 E-value=1 Score=162.87 Aligned_cols=175 Identities=16% Similarity=0.283 Sum_probs=144.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99869998151019999975200015899999999999999870899887422112210245789999999999999988
Q 000762 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1296)
Q Consensus 608 ~~~~~i~~~~~~si~~ei~~~~~~d~~~~~is~llm~~~i~~~l~~~~~~~~~~v~Sk~~l~i~gii~v~~sv~~s~Gl~ 687 (1296)
....++.+.|+ .+.+++.+ .-...+.++.+++++|+.+.+ + +..++..++.+++++++++|++
T Consensus 550 ~~~~~~~~vG~-~~~~~~~~---~~~~al~lali~i~l~l~~~F-s------------~~~~l~~l~~l~~~~~~~~g~l 612 (741)
T 3aqp_A 550 ATVLASETVGP-AIGEELRR---NAVMAVLVGLGLILLYVAFRF-D------------WTFGVASILAVAHDVAIVAGMY 612 (741)
T ss_dssp SCCCEEEEECH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHS-C------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77607997358-89999999---899999999999999999999-8------------9998999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 76063001034668877765402265571578999731---799999999999987667999999999999885105680
Q 000762 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1296)
Q Consensus 688 ~~~G~~~~~ii~~vipfLilgIGVD~~~~lv~~~~~~~---~~~~~~~~i~~~l~~~g~si~ltslt~~~~F~~~~~s~~ 764 (1296)
+++|++++. .+.+...+++|+++||.+|++++++++. ++.+.++++.+++++.+.+++.|++|++++|+.+++++.
T Consensus 613 ~l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~g~ 691 (741)
T 3aqp_A 613 SLLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGG 691 (741)
T ss_dssp HHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCH-HHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999167169-9999999999996466388449999999744799999999999999999999999999999999999545
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689999999999999999999999999998864200
Q 000762 765 PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1296)
Q Consensus 765 p~vr~F~i~aa~avl~~~i~~it~~pall~l~~kr~ 800 (1296)
+.++.||+..++|++++.+..+++.|+++.+..+|.
T Consensus 692 ~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 692 SVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 878999999999999999999999999999960123
Done!