Query 000765
Match_columns 1295
No_of_seqs 120 out of 159
Neff 2.2
Searched_HMMs 46136
Date Mon Apr 1 23:15:11 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1049 Polyadenylation factor 100.0 1.4E-44 3E-49 403.5 25.5 500 136-800 24-536 (538)
2 PF05182 Fip1: Fip1 motif; In 99.9 5.3E-24 1.1E-28 175.7 3.8 45 346-390 1-45 (45)
3 COG5213 FIP1 Polyadenylation f 99.8 1.2E-21 2.6E-26 203.5 3.2 54 343-396 116-169 (266)
4 KOG0921 Dosage compensation co 86.4 2.9 6.3E-05 53.0 9.4 108 186-327 1159-1266(1282)
5 KOG1924 RhoA GTPase effector D 28.4 2.8E+02 0.0061 36.1 9.5 60 336-398 611-672 (1102)
6 KOG1049 Polyadenylation factor 25.9 34 0.00073 41.7 1.4 53 730-782 420-478 (538)
7 PF11709 Mit_ribos_Mrp51: Mito 19.7 4E+02 0.0086 30.5 8.0 23 370-392 140-162 (312)
8 PF04094 DUF390: Protein of un 12.9 1.3E+03 0.027 30.3 10.4 29 142-170 6-37 (828)
9 PHA02669 hypothetical protein; 12.5 2.2E+02 0.0047 31.1 3.5 42 142-200 73-114 (210)
10 PF05984 Cytomega_UL20A: Cytom 10.2 2.3E+02 0.005 28.1 2.6 25 173-197 60-84 (100)
No 1
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=403.53 Aligned_cols=500 Identities=21% Similarity=0.244 Sum_probs=340.8
Q ss_pred ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 000765 136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE 215 (1295)
Q Consensus 136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~ 215 (1295)
.+.++.++.|+.|.|+.+++|++...-+.|+..- |-+|.+|++.++||++.+.+ ..++.++|..+. ..-|.
T Consensus 24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~ 94 (538)
T KOG1049|consen 24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE 94 (538)
T ss_pred ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence 4566778899999999999999999876554211 12555667778888877766 788999998771 11111
Q ss_pred CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 000765 216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA 295 (1295)
Q Consensus 216 ~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrp~~~~~~~a 295 (1295)
.+ .+ . ...++ ||+.++.+..+++...+...+.+|+
T Consensus 95 ~~--------~~-~-----~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~---------- 129 (538)
T KOG1049|consen 95 DD--------VA-V-----DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT---------- 129 (538)
T ss_pred cc--------cc-c-----ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence 11 11 0 00000 8999999999998888877777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 000765 296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE 375 (1295)
Q Consensus 296 GrgrGdWrp~g~k~~~~~~k~~h~g~~~~~~G~~~~GrG~eF~lp~~k~IfdvDID~~eeKPWRkPGADISDYFNYGFnE 375 (1295)
.++..++++|. +|+-.+.|... ..+||+||||.|++||||+|||||||||||||||
T Consensus 130 -------------~~~a~~kg~~~-----~~dld~~g~in------~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE 185 (538)
T KOG1049|consen 130 -------------NKSAAPKGKMS-----QVDLDTPGTIN------GVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE 185 (538)
T ss_pred -------------ccccccccCcc-----cccccCCcccC------CccceeecHHHhccCcccCCCccchhhhccccCH
Confidence 11223555553 34433333332 2389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhcccCC---CCCCCceeeecCCCCCCCCCCCCCCCCccCCC-CceEEEeccCccCC
Q 000765 376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD 451 (1295)
Q Consensus 376 ~TWr~Yc~kq~qlR~E~tmqsKI~~yESg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-aIIeIv~qdS~Dd~ 451 (1295)
+||++||++|++||.+|+++..+.+++..+ .+++.-.||..+- .|.+ .... +-..++|.++.--.
T Consensus 186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g~----~p~~-------~~ts~~~~~~~~~~~~~~~ 254 (538)
T KOG1049|consen 186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPGP----GPVG-------NLTSRTSVGARGIDSNQRP 254 (538)
T ss_pred HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCCC----CCcc-------ccCCccccccccCCCCCCC
Confidence 999999999999999999988888887654 3444444444431 1111 1110 11112222111110
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhcccccCcccccccCCCCCCCCC-------CC
Q 000765 452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP 524 (1295)
Q Consensus 452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~~~~~P~mNs~~~n~pegd~~-------lp 524 (1295)
.+. +.+.+...-...+.|. ....|+.|+-..++--|++. .|
T Consensus 255 --------~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p 302 (538)
T KOG1049|consen 255 --------AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP 302 (538)
T ss_pred --------CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence 000 0001100000001100 11233333322233333322 23
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 000765 525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV 603 (1295)
Q Consensus 525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv 603 (1295)
+-...|.++.-..-|..++ |-.++- .+..+.++++|.|+...+--|..+.|....|.++..|.. ..|.
T Consensus 303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g 371 (538)
T KOG1049|consen 303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG 371 (538)
T ss_pred CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence 3333344444444443333 112222 245577888899988889899999999999999988887 7888
Q ss_pred cccccccccccccccccccccccCCCcchhhcccccccccCcccCCCcccCcccccccccccCCccccCChhHHHHHhhc
Q 000765 604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS 683 (1295)
Q Consensus 604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs 683 (1295)
.|+.+.. ++.-.+.....+ .++. + .-..++.+...+...+. ++..-++.+|.
T Consensus 372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~ 423 (538)
T KOG1049|consen 372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR 423 (538)
T ss_pred ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence 8888766 555554311122 1111 1 13346677777888888 77888889999
Q ss_pred ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 000765 684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP 762 (1295)
Q Consensus 684 SenSkaRSgSskD~qk~~egeEeV~Qd~~S~r~g~~rrh~de~e~~~rRKdrd~r~emER~r~~~~-gRe~syp~rd~dp 762 (1295)
|+.+++++++.||.|. +|-|++++.|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus 424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~ 499 (538)
T KOG1049|consen 424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE 499 (538)
T ss_pred hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence 9999999999999999 9999999999999999999999999999999999999999999998 8899999999999
Q ss_pred CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 000765 763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN 800 (1295)
Q Consensus 763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~ 800 (1295)
..... ..+++.|++.|+++.....|..+....++++.
T Consensus 500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~ 536 (538)
T KOG1049|consen 500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN 536 (538)
T ss_pred ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence 87766 67889999999999999999999999998875
No 2
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=99.89 E-value=5.3e-24 Score=175.74 Aligned_cols=45 Identities=62% Similarity=1.359 Sum_probs=43.5
Q ss_pred eeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhh
Q 000765 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390 (1295)
Q Consensus 346 fdvDID~~eeKPWRkPGADISDYFNYGFnE~TWr~Yc~kq~qlR~ 390 (1295)
|+||||.+++||||+|||||||||||||||+||++||++|+++|+
T Consensus 1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~~~R~ 45 (45)
T PF05182_consen 1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQRQLRK 45 (45)
T ss_pred CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999984
No 3
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=99.83 E-value=1.2e-21 Score=203.47 Aligned_cols=54 Identities=41% Similarity=1.030 Sum_probs=51.3
Q ss_pred CcceeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhhcccc
Q 000765 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396 (1295)
Q Consensus 343 k~IfdvDID~~eeKPWRkPGADISDYFNYGFnE~TWr~Yc~kq~qlR~E~tmqs 396 (1295)
+.||+|||+.|.+||||+|||||||||||||||+||++||.+|++||..|+.+.
T Consensus 116 ~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q~~l~~d~~p~~ 169 (266)
T COG5213 116 QNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQEKLQQDYNPRE 169 (266)
T ss_pred cceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHHHHhhhccCHHH
Confidence 479999999999999999999999999999999999999999999999987754
No 4
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=86.43 E-value=2.9 Score=52.99 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=52.2
Q ss_pred EecCCCCCccCcchhhcccCCCCCcccCCCCCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCC
Q 000765 186 VADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRP 265 (1295)
Q Consensus 186 vadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRP 265 (1295)
+-||+.+ +-|+--|||--. -.+++--|.-+-.|||-. =|||+.||+.|++---=-|.|+
T Consensus 1159 ygDGp~P----PKmaryDnG~~~-n~SgyRRGgssysgGGYG----------------ggys~gGygsGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1159 YGDGPGP----PKMARYDNGPSN-NNSGYRRGGSSYSGGGYG----------------GGYSGGGYGSGGYGGSAPSARA 1217 (1282)
T ss_pred ccCCCCC----cccccccCCCcc-CccccccCCCCCCCCCcC----------------CCCCCCCcCCCCCCCCCCCCCC
Confidence 4578888 678999999421 112222221222222111 1566667665554322222222
Q ss_pred CCCCCCCCcccCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000765 266 GAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASG 327 (1295)
Q Consensus 266 gaa~~pga~~~~~~g~pgqvrp~~~~~~~aGrgrGdWrp~g~k~~~~~~k~~h~g~~~~~~G 327 (1295)
++ -+++++|--| .+.+-|-|-|.||.+..++-. ..-.||.-|+|-.++|
T Consensus 1218 ~~------Gagvg~GyrG-----vsrgGfrnnggGdyrnpgggy--rgsGGfgrgggrgagg 1266 (1282)
T KOG0921|consen 1218 NY------GAGVGNGYRG-----VSRGGFRNNGGGDYRNPGGGY--RGSGGFGRGGGRGAGG 1266 (1282)
T ss_pred Cc------cccccCCCcc-----ccCCccccCCCCCCCCCCCCc--cCCCCcCCCCCCCCCC
Confidence 22 2333344444 335667677888887543222 1235565555544444
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.45 E-value=2.8e+02 Score=36.07 Aligned_cols=60 Identities=18% Similarity=0.373 Sum_probs=30.7
Q ss_pred cccCCCCCcceeecCCCcCCCCCCCC-CCCCcc-cccCCCCHHHHHHHHHHHHHhhhhhccccch
Q 000765 336 EFTLPSHKTIFEVDIDGFEEKPWKYP-GVDITD-FFNFGLNEESWKDYCKQLEQHRLETTMQSKI 398 (1295)
Q Consensus 336 eF~lp~~k~IfdvDID~~eeKPWRkP-GADISD-YFNYGFnE~TWr~Yc~kq~qlR~E~tmqsKI 398 (1295)
-|.|++ |-+|.+++- +.--+|.+= -.|||+ -|=-+-+|+.+..- ....+|+..|.-|.|.
T Consensus 611 P~gLkp-KK~~k~e~~-Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~-dlfakL~~~Fatq~k~ 672 (1102)
T KOG1924|consen 611 PFGLKP-KKVYKPEVP-MRRFNWSKIVPRDLSENCFWVKVNEDKLEND-DLFAKLALKFATQPKV 672 (1102)
T ss_pred CCCCCc-cccCCCCCc-cccCCccccCccccCccceeeecchhhccch-HHHHHHHHHhhccccc
Confidence 344443 345655543 567788762 345553 57777777765321 1122345555544333
No 6
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=25.94 E-value=34 Score=41.71 Aligned_cols=53 Identities=28% Similarity=0.489 Sum_probs=35.9
Q ss_pred hhhhhhhhhHHHHhhh------hhhcccCCCCCCCCCCCCCcccccCCCCCcccccccc
Q 000765 730 FRRKDREGRQEMERNR------MVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERE 782 (1295)
Q Consensus 730 ~rRKdrd~r~emER~r------~~~~gRe~syp~rd~dp~~~~~~~~~~e~~Dr~kere 782 (1295)
.+|+.|+...+|++.| ++..|++-+|+.+..-+....-.+.....+|+.+||+
T Consensus 420 ~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~ 478 (538)
T KOG1049|consen 420 YRRRSRSRSPTRDPGRDKKPGELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDRERE 478 (538)
T ss_pred hhhhhhcccCCCCcccCCCCCcccccccccChhhhccCCCccccccccccccchhhHHH
Confidence 3444555666665554 5677888888877766555555477778888888876
No 7
>PF11709 Mit_ribos_Mrp51: Mitochondrial ribosomal protein subunit ; InterPro: IPR016712 The function of mitochondrial ribosomal small-subunit protein MRP51 is not entirely clear, but deletion of the MRP51 gene completely blocks mitochondrial gene expression [].
Probab=19.69 E-value=4e+02 Score=30.49 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhh
Q 000765 370 NFGLNEESWKDYCKQLEQHRLET 392 (1295)
Q Consensus 370 NYGFnE~TWr~Yc~kq~qlR~E~ 392 (1295)
..|.++..+..|+++++.+|.||
T Consensus 140 ~~~mt~~ef~~yL~kvr~~R~eF 162 (312)
T PF11709_consen 140 LAGMTEGEFERYLKKVRPLRPEF 162 (312)
T ss_pred ccCCCHHHHHHHHHHhHHHHHHH
Confidence 46999999999999999999998
No 8
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=12.87 E-value=1.3e+03 Score=30.27 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=16.9
Q ss_pred cccccCCCccC---ceEEeccCCCCCccccCC
Q 000765 142 EDDWESDSEDD---LQIVLNEDNHRPMLIDGG 170 (1295)
Q Consensus 142 ~ddwdSDSeDd---lqiVlNd~~~~p~~~~r~ 170 (1295)
|.-||=..||= ||-|||=++--.+.|--+
T Consensus 6 G~rWDW~~ED~K~VvqRVL~L~SvE~sLIP~G 37 (828)
T PF04094_consen 6 GERWDWGPEDFKMVVQRVLNLDSVEASLIPQG 37 (828)
T ss_pred CCcCCCCHHHHHHHHHHHhccchhhhhccccc
Confidence 44566555542 445789877655555444
No 9
>PHA02669 hypothetical protein; Provisional
Probab=12.48 E-value=2.2e+02 Score=31.08 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.5
Q ss_pred cccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchh
Q 000765 142 EDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVE 200 (1295)
Q Consensus 142 ~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~E 200 (1295)
-.-||||+||.=.+----++ ++--|--|..+..++.|++++|
T Consensus 73 ~SRWDSDtEdGdtvSTTSTS-----------------~gGTLtRv~~~~~p~~~~pmYE 114 (210)
T PHA02669 73 CSRWDSDTEDGDTVSTTSTS-----------------GGGTLSRVWVGGGPRFQHPMYE 114 (210)
T ss_pred cccccCcccCCceeeeeecC-----------------CCceEEeeeecCCCccCcchhh
Confidence 45699999976554433332 3446777777888888888875
No 10
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=10.23 E-value=2.3e+02 Score=28.11 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.1
Q ss_pred CCCCCCCCCceEEEecCCCCCccCc
Q 000765 173 DDDDDEDGDPLVIVADADASNHQGL 197 (1295)
Q Consensus 173 dddddeD~d~lvivadg~~~~~~~~ 197 (1295)
|+++|-.||--|+|.||+...||-+
T Consensus 60 Dg~EdysgdYDVLItd~dG~~hqqP 84 (100)
T PF05984_consen 60 DGNEDYSGDYDVLITDGDGSEHQQP 84 (100)
T ss_pred CCcccccccccEEEecCCCCcCCCC
Confidence 5555556788899999999998866
Done!