Query 000765
Match_columns 1295
No_of_seqs 122 out of 159
Neff 2.2
Searched_HMMs 29240
Date Tue Mar 26 16:52:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000765.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_535-538//hhsearch_pdb/000765hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bts_E Regulatory protein GAL4 1.0 1 1 12.8 -0.9 12 365-376 8-19 (26)
2 3ui3_A Immunoglobulin G-bindin 1.0 1 1 12.4 -6.1 33 342-374 60-96 (160)
3 1f2v_A COBH, precorrin-8X meth 1.0 1 1 12.3 0.1 17 250-266 3-19 (219)
4 3p06_A VP4 protein; CIS-cleava 1.0 1 1 12.3 0.3 28 341-368 157-188 (194)
5 1qez_A Ppase, S-ppase, protein 1.0 1 1 12.0 -1.8 10 369-378 50-59 (173)
6 2prd_A Pyrophosphate phosphohy 1.0 1 1 11.9 -2.1 10 369-378 53-62 (174)
7 3q46_A TT-ippase; inorganic py 1.0 1 1 11.9 -1.8 11 369-379 54-64 (178)
8 2au7_A Inorganic pyrophosphata 1.0 1 1 11.9 -1.8 10 369-378 53-62 (175)
9 3fq3_A Inorganic pyrophosphata 1.0 1 1 11.9 -1.8 10 369-378 75-84 (197)
10 3d53_A Inorganic pyrophosphata 1.0 1 1 11.8 -1.8 10 369-378 54-63 (173)
No 1
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=12.80 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=7.0
Q ss_pred CCCCCCCCCCHH
Q ss_conf 852125788978
Q 000765 365 ITDFFNFGLNEE 376 (1295)
Q Consensus 365 ISDYFNYGFnE~ 376 (1295)
+-|-|||=||++
T Consensus 8 MDDvyNylFdd~ 19 (26)
T 3bts_E 8 MDDVYNYLFDDE 19 (26)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999860841
No 2
>3ui3_A Immunoglobulin G-binding protein G, virulence-ASS protein D; ferrodoxin-like fold, virulence associated protein D, ribonu RNA binding protein; 2.80A {Streptococcus}
Probab=1.00 E-value=1 Score=12.42 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCCCEEECCCCCCC---CCCCCCCCCCCCCC-CCCCC
Q ss_conf 99610114777678---98999999985212-57889
Q 000765 342 HKTIFEVDIDGFEE---KPWKYPGVDITDFF-NFGLN 374 (1295)
Q Consensus 342 ~k~IfdvDiD~lee---KPWRkPGADISDYF-NYGFn 374 (1295)
..-.||+|+..|++ +||++.=.||-.|+ .|||.
T Consensus 60 YAIaFDLdt~~LKk~Y~~~y~nAY~DIrk~Le~~GF~ 96 (160)
T 3ui3_A 60 YALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFE 96 (160)
T ss_dssp EEEEEEECHHHHHHHTCSSCHHHHHHHHHHHHHTTEE
T ss_pred EEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 8999742579998776874267999999999984987
No 3
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound sheet, isomerase; 2.10A {Pseudomonas denitrificans} SCOP: c.23.17.1 PDB: 1i1h_A*
Probab=1.00 E-value=1 Score=12.31 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 77679988866212789
Q 000765 250 FAYHNPYHSQFKYVRPG 266 (1295)
Q Consensus 250 g~~~hp~HsqfKYVRPg 266 (1295)
|.|||-||-.|||+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (219)
T 1f2v_A 3 GSHHHHHHPEYDYIRDG 19 (219)
T ss_dssp --------CCCCCCCCH
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 76556668756687880
No 4
>3p06_A VP4 protein; CIS-cleavage, intramolecular acyl-enzyme, ester-linkage, ALP protein, protease, polyprotein processing, acyl-enzyme, HYD; 2.10A {Tellina virus 1}
Probab=1.00 E-value=1 Score=12.29 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=16.9
Q ss_pred CCCCCEEECCCCC----CCCCCCCCCCCCCCC
Q ss_conf 9996101147776----789899999998521
Q 000765 341 SHKTIFEVDIDGF----EEKPWKYPGVDITDF 368 (1295)
Q Consensus 341 ~~k~IfdvDiD~l----eeKPWRkPGADISDY 368 (1295)
+.+.+--+.++++ -+||||+|-.-+|.-
T Consensus 157 sdralkvvtleqlrqvvgdkpwrkpmvtfssg 188 (194)
T 3p06_A 157 SDRALKVVTLEQLRQVVGDKPWRKPMVTFSSG 188 (194)
T ss_dssp STTSEECCBHHHHHHHHSSCCCSSSCEECCCC
T ss_pred CCCCEEEEEHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 76514567899999886688655742784077
No 5
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=1.00 E-value=1 Score=11.97 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=6.6
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000765 369 FNFGLNEESW 378 (1295)
Q Consensus 369 FNYGFnE~TW 378 (1295)
|||||=..||
T Consensus 50 ~NYGfIP~Tl 59 (173)
T 1qez_A 50 FNYGFIPGTL 59 (173)
T ss_dssp SEEEECTTCC
T ss_pred CCCCCCCCCC
T ss_conf 3346525662
No 6
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=1.00 E-value=1 Score=11.93 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=5.3
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000765 369 FNFGLNEESW 378 (1295)
Q Consensus 369 FNYGFnE~TW 378 (1295)
|||||=..||
T Consensus 53 ~NYGfIP~Tl 62 (174)
T 2prd_A 53 GDYGFIPSTL 62 (174)
T ss_dssp SEEEECSSCC
T ss_pred CCCCCCCCCC
T ss_conf 2346535765
No 7
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=1.00 E-value=1 Score=11.89 Aligned_cols=11 Identities=18% Similarity=0.872 Sum_probs=6.4
Q ss_pred CCCCCCHHHHH
Q ss_conf 25788978899
Q 000765 369 FNFGLNEESWK 379 (1295)
Q Consensus 369 FNYGFnE~TWk 379 (1295)
|||||=..||.
T Consensus 54 ~NYGfIP~Tl~ 64 (178)
T 3q46_A 54 VDYGIIPQTWY 64 (178)
T ss_dssp SEEEECTTCCB
T ss_pred CCCCCCCCCCC
T ss_conf 22125878517
No 8
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=1.00 E-value=1 Score=11.87 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=7.0
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000765 369 FNFGLNEESW 378 (1295)
Q Consensus 369 FNYGFnE~TW 378 (1295)
|||||=..||
T Consensus 53 ~NYGfIP~Tl 62 (175)
T 2au7_A 53 CNYGYINHTL 62 (175)
T ss_dssp SEEEECTTCC
T ss_pred CCCCCCCCCC
T ss_conf 1748267853
No 9
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=1.00 E-value=1 Score=11.87 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=9.3
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000765 369 FNFGLNEESW 378 (1295)
Q Consensus 369 FNYGFnE~TW 378 (1295)
|||||=..||
T Consensus 75 ~NYGfIP~Tl 84 (197)
T 3fq3_A 75 GNYGFVPHTL 84 (197)
T ss_dssp SEEEECTTCC
T ss_pred CCCCCCCCCC
T ss_conf 3542156744
No 10
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=1.00 E-value=1 Score=11.85 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=7.1
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000765 369 FNFGLNEESW 378 (1295)
Q Consensus 369 FNYGFnE~TW 378 (1295)
|||||=..||
T Consensus 54 ~NYGfIP~Tl 63 (173)
T 3d53_A 54 CNYGFIPDTL 63 (173)
T ss_dssp SEEEECTTCC
T ss_pred CCCCHHHCCC
T ss_conf 4215243772
Done!