Query 000765
Match_columns 1295
No_of_seqs 122 out of 159
Neff 2.2
Searched_HMMs 13730
Date Tue Mar 26 16:59:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000765.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_535-538//hhsearch_scop/000765hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gk8i_ d.73.1.1 (I:) Ribulose 8.1 38 0.0027 9.3 1.6 18 1245-1262 74-91 (126)
2 d1rcqa2 c.1.6.1 (A:8-233) Alan 4.6 79 0.0057 7.3 1.8 20 256-275 193-212 (226)
3 d1qeza_ b.40.5.1 (A:) Inorgani 3.1 57 0.0042 8.2 -1.8 12 368-379 48-59 (170)
4 d1twla_ b.40.5.1 (A:) Inorgani 3.1 58 0.0042 8.2 -1.8 12 368-379 52-63 (173)
5 d1cxya_ d.120.1.1 (A:) Cytochr 2.8 1.4E+02 0.011 5.6 0.4 23 360-382 47-71 (81)
6 d2o3bb1 d.221.1.1 (B:1-135) Nu 2.8 1.5E+02 0.011 5.6 0.4 20 340-359 53-77 (135)
7 d2jxta1 d.355.1.1 (A:1-78) Rib 2.7 1.5E+02 0.011 5.5 0.4 18 812-829 39-56 (78)
8 d2prda_ b.40.5.1 (A:) Inorgani 2.6 62 0.0045 8.0 -2.1 10 369-378 53-62 (174)
9 d1nkta4 c.37.1.19 (A:397-615) 2.2 1.2E+02 0.0085 6.2 -1.1 23 273-298 73-95 (219)
10 d1bd0a2 c.1.6.1 (A:12-244) Ala 2.2 1.9E+02 0.014 4.8 0.9 33 256-295 200-232 (233)
No 1
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.13 E-value=38 Score=9.34 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCHHHHHH
Q ss_conf 014789999722588630
Q 000765 1245 ERFKLPMPSEKDTLAIKK 1262 (1295)
Q Consensus 1245 ERFKLPMP~EKda~~~KK 1262 (1295)
+-+||||=+.+|+-+|.+
T Consensus 74 tMWKLPMFg~tD~~~Vl~ 91 (126)
T d1gk8i_ 74 TMWKLPMFGCRDPMQVLR 91 (126)
T ss_dssp EEESCCCTTCCCHHHHHH
T ss_pred EEECCCCCCCCCHHHHHH
T ss_conf 110766689989899999
No 2
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.57 E-value=79 Score=7.31 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 88866212789999999965
Q 000765 256 YHSQFKYVRPGAAPIPGSAT 275 (1295)
Q Consensus 256 ~HsqfKYVRPgaa~~pga~~ 275 (1295)
...+|-+||||.+.+-..|.
T Consensus 193 ~~~~~d~vR~Gi~lYG~~P~ 212 (226)
T d1rcqa2 193 PKVPSDWVRPGILLYGATPF 212 (226)
T ss_dssp TTSCCSEECCCGGGGTCCSS
T ss_pred CCCCCCEECCCCEEECCCCC
T ss_conf 97789887608211583968
No 3
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=3.08 E-value=57 Score=8.19 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=7.3
Q ss_pred CCCCCCCHHHHH
Q ss_conf 125788978899
Q 000765 368 FFNFGLNEESWK 379 (1295)
Q Consensus 368 YFNYGFnE~TWk 379 (1295)
.|||||=-.||-
T Consensus 48 P~nYGfiP~T~~ 59 (170)
T d1qeza_ 48 PFNYGFIPGTLE 59 (170)
T ss_dssp SSEEEECTTCCC
T ss_pred CCCEEEEECCCC
T ss_conf 754111311124
No 4
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.07 E-value=58 Score=8.18 Aligned_cols=12 Identities=17% Similarity=0.659 Sum_probs=8.5
Q ss_pred CCCCCCCHHHHH
Q ss_conf 125788978899
Q 000765 368 FFNFGLNEESWK 379 (1295)
Q Consensus 368 YFNYGFnE~TWk 379 (1295)
-|||||=-.||.
T Consensus 52 P~nYGfiP~T~~ 63 (173)
T d1twla_ 52 PVDYGIIPRTWY 63 (173)
T ss_dssp SSEEEECTTCCB
T ss_pred CCCCCEEECCCC
T ss_conf 866561202134
No 5
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=2.78 E-value=1.4e+02 Score=5.64 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=14.4
Q ss_pred CCCCCCCCCCC-CCCCH-HHHHHHH
Q ss_conf 99999852125-78897-8899999
Q 000765 360 YPGVDITDFFN-FGLNE-ESWKDYC 382 (1295)
Q Consensus 360 kPGADISDYFN-YGFnE-~TWk~Yc 382 (1295)
.-|.|+|++|+ |++.+ .++.++-
T Consensus 47 ~aGkD~t~~F~~~~~~~~Hs~~a~~ 71 (81)
T d1cxya_ 47 WCGQESTEAWETKSYGEPHSSLAAR 71 (81)
T ss_dssp GTTSBCHHHHHHTTTTCCCCHHHHH
T ss_pred HCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 8398620888851876659899999
No 6
>d2o3bb1 d.221.1.1 (B:1-135) Nuclease A inhibitor (NuiA) {Anabaena sp., pcc 7120 [TaxId: 1167]}
Probab=2.77 E-value=1.5e+02 Score=5.63 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=10.0
Q ss_pred CCCCCCEEECCCCC-----CCCCCC
Q ss_conf 99996101147776-----789899
Q 000765 340 PSHKTIFEVDIDGF-----EEKPWK 359 (1295)
Q Consensus 340 P~~k~IfdvDiD~l-----eeKPWR 359 (1295)
|...+|-.+++|.| .+.+|.
T Consensus 53 ~~~tpve~~~ld~Ff~~~~t~~~W~ 77 (135)
T d2o3bb1 53 GQDAPFKVVDIDSFFSRATTPQDWY 77 (135)
T ss_dssp CTTSCEEEECHHHHTHHHHCCCTTC
T ss_pred CCCCCCEEEEHHHHHCCCCCCCCCC
T ss_conf 9898604665988737467774545
No 7
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.69 E-value=1.5e+02 Score=5.53 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=13.1
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 001010002365662111
Q 000765 812 HLDEIGARHRGKARESER 829 (1295)
Q Consensus 812 ~~de~g~R~R~K~Re~er 829 (1295)
--.+||||||-|-+-+..
T Consensus 39 ~Ys~~gSrHr~kr~~I~I 56 (78)
T d2jxta1 39 LYSEFGSKHRVPRSKVKI 56 (78)
T ss_dssp HHHHHHHHTCCCGGGEEE
T ss_pred HHHHHHHHCCCCCCCEEE
T ss_conf 999976651887342699
No 8
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]}
Probab=2.57 E-value=62 Score=7.96 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCHHHH
Q ss_conf 2578897889
Q 000765 369 FNFGLNEESW 378 (1295)
Q Consensus 369 FNYGFnE~TW 378 (1295)
|||||=-.||
T Consensus 53 ~nYGfiP~T~ 62 (174)
T d2prda_ 53 GDYGFIPSTL 62 (174)
T ss_dssp SEEEECSSCC
T ss_pred CCCCEECCCC
T ss_conf 7712152232
No 9
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.24 E-value=1.2e+02 Score=6.24 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96567999998667786689988878
Q 000765 273 SATAVAAGGPGQVRPLVNMGPAAGRG 298 (1295)
Q Consensus 273 a~~~~~~g~pgq~rp~~~~~~~aGrg 298 (1295)
|..+..+|-+|.|--+-| |||||
T Consensus 73 AeIIAqAG~~GaVTIATN---MAGRG 95 (219)
T d1nkta4 73 ATIIAVAGRRGGVTVATN---MAGRG 95 (219)
T ss_dssp HHHHHTTTSTTCEEEEET---TCSTT
T ss_pred HHHHHHCCCCCCEEEECC---CCCCC
T ss_conf 899996466883796200---04787
No 10
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.18 E-value=1.9e+02 Score=4.84 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8886621278999999996567999998667786689988
Q 000765 256 YHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA 295 (1295)
Q Consensus 256 ~HsqfKYVRPgaa~~pga~~~~~~g~pgq~rp~~~~~~~a 295 (1295)
...+|-+||||.+.+-..| .++ ++|.|.+...+
T Consensus 200 ~~~~~d~vR~Gi~lYG~~p------~~~-lkpvm~~~~~~ 232 (233)
T d1bd0a2 200 PDRTFNMVRFGIAMYGLAP------SPG-IKPLLPYPLKE 232 (233)
T ss_dssp TTSCTTEEEECGGGGTCCS------CGG-GGGGCSSCCCC
T ss_pred CCCCCCEECCCCEEECCCC------CCC-CCCCCCCCCCC
T ss_conf 8556978772942078798------888-98588878875
Done!