Query 000767
Match_columns 1294
No_of_seqs 443 out of 2897
Neff 7.6
Searched_HMMs 46136
Date Mon Apr 1 23:18:50 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 3E-201 7E-206 1947.1 108.8 1168 53-1274 1-1204(1204)
2 KOG1933 Cholesterol transport 100.0 3E-173 6E-178 1607.5 46.5 1157 51-1281 1-1182(1201)
3 TIGR00918 2A060602 The Eukaryo 100.0 5E-127 1E-131 1219.9 76.0 886 363-1289 38-1133(1145)
4 PF02460 Patched: Patched fami 100.0 3E-91 6.5E-96 902.7 67.2 776 398-1273 2-797 (798)
5 KOG1934 Predicted membrane pro 100.0 1.2E-89 2.5E-94 856.1 70.7 810 363-1277 4-834 (868)
6 KOG1935 Membrane protein Patch 100.0 7.5E-77 1.6E-81 692.1 46.9 880 363-1284 54-1081(1143)
7 COG1033 Predicted exporters of 100.0 3.2E-60 7E-65 580.3 64.0 719 372-1277 2-725 (727)
8 TIGR00921 2A067 The (Largely A 100.0 1.9E-54 4.2E-59 557.9 66.8 711 381-1272 2-719 (719)
9 TIGR00833 actII Transport prot 100.0 4.1E-44 9E-49 466.4 67.6 737 381-1276 1-906 (910)
10 TIGR03480 HpnN hopanoid biosyn 100.0 3.6E-41 7.8E-46 439.3 57.3 572 606-1270 246-856 (862)
11 TIGR00915 2A0602 The (Largely 100.0 2E-28 4.4E-33 323.2 56.5 615 606-1291 318-1042(1044)
12 PRK10614 multidrug efflux syst 100.0 2.3E-28 4.9E-33 322.7 55.9 603 606-1274 312-1009(1025)
13 PRK10503 multidrug efflux syst 100.0 6.1E-28 1.3E-32 318.1 55.4 603 606-1274 321-1023(1040)
14 PRK09579 multidrug efflux prot 100.0 7.7E-28 1.7E-32 316.5 54.2 610 606-1280 311-1009(1017)
15 PRK09577 multidrug efflux prot 100.0 8.7E-28 1.9E-32 316.9 53.6 600 606-1277 317-1026(1032)
16 PRK10555 aminoglycoside/multid 100.0 3.5E-27 7.5E-32 311.4 57.3 602 606-1274 318-1027(1037)
17 TIGR00914 2A0601 heavy metal e 100.0 2.5E-27 5.4E-32 314.3 49.7 599 606-1277 321-1039(1051)
18 PRK15127 multidrug efflux syst 100.0 1.3E-26 2.9E-31 305.7 56.0 603 606-1274 318-1030(1049)
19 COG0841 AcrB Cation/multidrug 100.0 1.4E-27 3.1E-32 307.3 45.6 600 606-1274 309-1007(1009)
20 PF00873 ACR_tran: AcrB/AcrD/A 100.0 1.8E-27 3.8E-32 316.8 42.7 603 606-1273 311-1020(1021)
21 COG1033 Predicted exporters of 100.0 2E-27 4.4E-32 292.2 35.8 360 364-798 364-725 (727)
22 PF12349 Sterol-sensing: Stero 99.9 2.7E-27 5.9E-32 243.6 14.4 152 659-810 1-152 (153)
23 TIGR00920 2A060605 3-hydroxy-3 99.9 7.3E-27 1.6E-31 283.9 14.2 168 629-803 60-228 (886)
24 TIGR00921 2A067 The (Largely A 99.9 2.8E-24 6.1E-29 277.8 34.8 352 367-793 367-719 (719)
25 PRK13024 bifunctional preprote 99.9 1E-22 2.3E-27 257.6 47.6 449 631-1274 269-733 (755)
26 COG2409 Predicted drug exporte 99.9 5.1E-22 1.1E-26 258.6 49.4 779 372-1277 3-920 (937)
27 COG3696 Putative silver efflux 99.9 1.3E-22 2.8E-27 244.8 38.1 603 606-1276 314-1021(1027)
28 PRK14726 bifunctional preprote 99.9 1.4E-20 3.1E-25 236.6 47.4 445 631-1276 375-830 (855)
29 TIGR00833 actII Transport prot 99.9 4.2E-21 9.1E-26 251.2 36.2 178 607-797 722-906 (910)
30 PF03176 MMPL: MMPL family; I 99.9 4E-21 8.8E-26 225.6 28.4 193 590-798 108-306 (333)
31 PRK13023 bifunctional preprote 99.9 2.1E-18 4.5E-23 214.8 46.0 445 631-1274 281-734 (758)
32 PF03176 MMPL: MMPL family; I 99.8 3.9E-19 8.4E-24 208.8 19.8 207 1069-1277 92-306 (333)
33 PRK12911 bifunctional preprote 99.8 4.6E-16 1E-20 196.0 45.4 151 633-798 914-1065(1403)
34 TIGR03480 HpnN hopanoid biosyn 99.8 6.6E-18 1.4E-22 221.3 30.3 194 1081-1276 228-426 (862)
35 COG4258 Predicted exporter [Ge 99.8 8.7E-16 1.9E-20 177.4 34.1 254 608-908 235-490 (788)
36 PF02460 Patched: Patched fami 99.7 6.4E-15 1.4E-19 192.0 37.8 373 369-794 422-797 (798)
37 PRK09579 multidrug efflux prot 99.6 8.8E-15 1.9E-19 193.5 24.5 192 1079-1275 291-490 (1017)
38 COG0841 AcrB Cation/multidrug 99.6 5.9E-15 1.3E-19 191.3 21.0 203 1067-1278 280-490 (1009)
39 PRK10614 multidrug efflux syst 99.6 2.2E-14 4.7E-19 190.5 24.4 160 1115-1276 327-492 (1025)
40 PRK09577 multidrug efflux prot 99.6 2.8E-14 6E-19 189.4 24.0 157 1117-1275 334-497 (1032)
41 TIGR00915 2A0602 The (Largely 99.6 4.4E-14 9.5E-19 187.7 24.5 158 1116-1275 334-498 (1044)
42 PRK15127 multidrug efflux syst 99.6 3.9E-14 8.6E-19 187.9 23.9 159 1116-1276 334-499 (1049)
43 PRK10555 aminoglycoside/multid 99.6 4.6E-14 1E-18 187.4 24.0 159 1116-1276 334-499 (1037)
44 PRK10503 multidrug efflux syst 99.6 5.1E-14 1.1E-18 186.8 23.6 161 1113-1275 334-500 (1040)
45 PF00873 ACR_tran: AcrB/AcrD/A 99.6 3.2E-14 6.9E-19 190.3 19.6 193 1079-1276 291-492 (1021)
46 TIGR00916 2A0604s01 protein-ex 99.6 6.3E-14 1.4E-18 150.2 18.0 128 1117-1246 44-176 (192)
47 PRK13022 secF preprotein trans 99.6 2.1E-13 4.5E-18 155.1 22.8 158 1116-1276 123-285 (289)
48 TIGR00918 2A060602 The Eukaryo 99.6 1.3E-12 2.8E-17 170.0 32.7 178 607-799 943-1122(1145)
49 KOG1934 Predicted membrane pro 99.6 2.5E-12 5.4E-17 163.1 34.5 374 370-798 456-834 (868)
50 TIGR00966 3a0501s07 protein-ex 99.5 7.7E-13 1.7E-17 147.7 22.3 146 1116-1264 94-244 (246)
51 TIGR00914 2A0601 heavy metal e 99.5 3.4E-13 7.4E-18 180.0 22.8 156 1116-1275 337-508 (1051)
52 TIGR00917 2A060601 Niemann-Pic 99.5 7.4E-12 1.6E-16 166.5 34.2 152 1123-1276 572-749 (1204)
53 PRK13022 secF preprotein trans 99.5 6.4E-13 1.4E-17 151.2 18.7 165 617-798 119-286 (289)
54 TIGR00916 2A0604s01 protein-ex 99.5 6.2E-13 1.3E-17 142.6 14.7 138 632-783 51-191 (192)
55 PRK13024 bifunctional preprote 99.4 4.2E-12 9.1E-17 161.7 21.8 159 1115-1277 261-422 (755)
56 TIGR01129 secD protein-export 99.4 9.9E-12 2.2E-16 147.2 21.6 151 1116-1270 244-397 (397)
57 PRK08578 preprotein translocas 99.4 9.9E-12 2.1E-16 141.6 20.1 155 1116-1276 130-288 (292)
58 PRK05812 secD preprotein trans 99.4 1.3E-11 2.7E-16 149.3 22.1 154 1117-1274 330-486 (498)
59 PRK13023 bifunctional preprote 99.3 4.5E-11 9.8E-16 149.9 23.0 156 1117-1276 275-433 (758)
60 PRK05812 secD preprotein trans 99.3 1.9E-11 4.1E-16 147.8 18.7 152 631-797 336-488 (498)
61 PRK14726 bifunctional preprote 99.3 6.1E-11 1.3E-15 150.4 22.7 157 1116-1276 368-527 (855)
62 TIGR00966 3a0501s07 protein-ex 99.3 6.1E-11 1.3E-15 132.5 19.3 141 631-785 101-244 (246)
63 TIGR01129 secD protein-export 99.3 4.4E-11 9.5E-16 141.7 17.3 147 630-791 250-397 (397)
64 PRK13021 secF preprotein trans 99.3 2E-10 4.4E-15 130.1 21.0 157 1116-1275 122-283 (297)
65 PRK08578 preprotein translocas 99.3 3.4E-10 7.4E-15 129.1 21.4 166 610-798 120-289 (292)
66 PRK12933 secD preprotein trans 99.2 1.8E-10 4E-15 139.6 17.2 153 631-798 443-597 (604)
67 PRK12933 secD preprotein trans 99.2 4.3E-10 9.4E-15 136.3 19.9 157 1118-1276 434-596 (604)
68 PRK12911 bifunctional preprote 99.2 9E-10 2E-14 140.2 21.5 151 1123-1277 912-1065(1403)
69 PF02355 SecD_SecF: Protein ex 99.1 1.8E-09 3.8E-14 115.3 17.4 159 1113-1274 24-187 (189)
70 PRK08343 secD preprotein trans 99.1 3.9E-09 8.5E-14 125.4 21.9 144 1121-1270 262-406 (417)
71 PF02355 SecD_SecF: Protein ex 99.1 3.2E-09 6.9E-14 113.3 18.7 163 617-796 23-188 (189)
72 COG3696 Putative silver efflux 99.1 4.1E-09 8.9E-14 129.4 21.2 192 1076-1274 294-496 (1027)
73 PRK13021 secF preprotein trans 99.1 5E-09 1.1E-13 118.9 20.0 169 610-796 112-283 (297)
74 COG2409 Predicted drug exporte 98.9 3.4E-08 7.4E-13 130.0 21.6 192 1084-1277 148-347 (937)
75 COG0341 SecF Preprotein transl 98.8 2.2E-07 4.8E-12 105.3 21.1 175 609-801 119-296 (305)
76 KOG3664 Predicted patched tran 98.8 1.8E-09 3.9E-14 134.5 3.5 181 606-798 303-503 (999)
77 PRK08343 secD preprotein trans 98.8 2.5E-07 5.3E-12 110.2 19.8 170 606-791 240-410 (417)
78 PF12349 Sterol-sensing: Stero 98.7 1.4E-07 3.1E-12 97.6 13.2 129 1143-1274 5-137 (153)
79 COG0342 SecD Preprotein transl 98.7 2.1E-07 4.5E-12 113.0 16.1 152 633-799 348-500 (506)
80 COG0341 SecF Preprotein transl 98.6 1E-06 2.2E-11 100.0 17.9 158 1117-1277 131-293 (305)
81 COG4258 Predicted exporter [Ge 98.4 8.3E-07 1.8E-11 104.3 11.2 136 630-789 647-782 (788)
82 COG0342 SecD Preprotein transl 98.4 4.9E-06 1.1E-10 101.2 17.8 153 1120-1276 343-498 (506)
83 KOG1935 Membrane protein Patch 98.2 8.8E-06 1.9E-10 98.8 11.5 124 1147-1273 444-568 (1143)
84 TIGR00920 2A060605 3-hydroxy-3 97.6 0.00041 8.8E-09 87.1 13.3 130 1143-1275 89-221 (886)
85 PF03024 Folate_rec: Folate re 95.4 0.0042 9E-08 65.5 0.0 96 85-188 16-117 (167)
86 KOG1933 Cholesterol transport 92.5 0.037 7.9E-07 73.0 0.1 153 632-798 1023-1178(1201)
87 KOG3664 Predicted patched tran 61.6 3 6.6E-05 54.2 0.5 135 1140-1277 345-503 (999)
88 PF08006 DUF1700: Protein of u 60.7 20 0.00044 38.3 6.6 23 1075-1097 41-63 (181)
89 PF05297 Herpes_LMP1: Herpesvi 56.1 3.7 8.1E-05 45.5 0.0 52 1121-1172 53-105 (381)
90 COG4709 Predicted membrane pro 54.6 3E+02 0.0065 29.5 15.6 27 1073-1099 39-65 (195)
91 TIGR00400 mgtE Mg2+ transporte 39.6 5.7E+02 0.012 31.6 15.4 71 1207-1279 350-421 (449)
92 COG2239 MgtE Mg/Co/Ni transpor 34.6 9.8E+02 0.021 29.6 16.2 92 1173-1278 327-420 (451)
93 COG3301 NrfD Formate-dependent 32.5 8.2E+02 0.018 28.1 14.2 101 671-773 140-241 (305)
94 PF01102 Glycophorin_A: Glycop 32.3 54 0.0012 32.7 3.8 10 306-315 84-93 (122)
95 PF02754 CCG: Cysteine-rich do 31.6 60 0.0013 29.1 3.9 48 83-130 21-85 (85)
96 cd07912 Tweety_N N-terminal do 28.7 3.1E+02 0.0067 33.5 10.1 16 1255-1270 389-404 (418)
97 PRK02935 hypothetical protein; 28.5 1.9E+02 0.004 27.9 6.4 30 665-694 38-67 (110)
98 PF11023 DUF2614: Protein of u 25.4 1.9E+02 0.0041 28.3 5.9 30 665-694 37-66 (114)
99 PF05393 Hum_adeno_E3A: Human 24.9 1.3E+02 0.0027 28.0 4.4 29 296-324 40-68 (94)
100 PF01914 MarC: MarC family int 24.5 2.3E+02 0.0049 31.0 7.4 27 1163-1189 60-86 (203)
101 PTZ00370 STEVOR; Provisional 23.3 1.6E+02 0.0035 33.6 5.9 14 748-761 243-256 (296)
102 PF09946 DUF2178: Predicted me 22.6 3.1E+02 0.0066 27.0 7.1 22 760-781 88-109 (111)
103 KOG4433 Tweety transmembrane/c 20.7 5.5E+02 0.012 31.5 9.8 18 1254-1271 389-406 (526)
104 PF03649 UPF0014: Uncharacteri 20.3 1.3E+03 0.028 26.2 13.2 43 696-738 123-179 (250)
105 COG4988 CydD ABC-type transpor 20.2 1.7E+03 0.036 28.3 14.2 29 1133-1161 129-157 (559)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=3.4e-201 Score=1947.05 Aligned_cols=1168 Identities=58% Similarity=0.962 Sum_probs=1018.1
Q ss_pred eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 000767 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN 128 (1294)
Q Consensus 53 C~~~g~c~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N 128 (1294)
|+|||+||++++++++|||||++|++|+++.+++++++||+++ +++|||++|+++|++||++++++++|||||++|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 9999999999999999999999999999999999999999854 469999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCcceEEEeecccCCCceEEEEEEEEccccchHHhhccccCcccCCChhHHhhcCCC---CcCHHHH
Q 000767 129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW 205 (1294)
Q Consensus 129 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg~---a~~~~~~ 205 (1294)
|+++||+||||||||+|++||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+|||| +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999976556667999999999999999999999999999999999999997 7899999
Q ss_pred HHhhcccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCcCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 000767 206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK 280 (1294)
Q Consensus 206 ~~flG~~~~~~~~~sP~~i~f~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sC~~~~~~~~~~~~~~~~ 280 (1294)
|+||||++ +++|||||||+++... +.+++|||..+++|||. .++|||+||++ |||.+||+++++++|+++
T Consensus 161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~ 235 (1204)
T TIGR00917 161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL 235 (1204)
T ss_pred HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence 99999984 3689999999987532 34799999999999986 48999999999 999877777778888886
Q ss_pred ecCCccchhhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccCCCccchhhhhcccccccccccCCccccccch
Q 000767 281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQ 360 (1294)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1294)
. ++|++|+++++|.+++++++.+++..+++++++..........++.. .+..+ ++++. ..... .. .
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~-----~~--~ 301 (1204)
T TIGR00917 236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEI-NSSNN-QSDQN-TPQRN-----EG--Q 301 (1204)
T ss_pred c----CcchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-ccccc-ccccc-ccccc-----cc--h
Confidence 4 68999999999988777676665554443332211111100000000 00000 00000 00000 00 2
Q ss_pred hhhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeE
Q 000767 361 LSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEE 440 (1294)
Q Consensus 361 ~~~~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eq 440 (1294)
.++++++++++|++||.|++||||++|++++++++++++|+.++++++||+++|+|+++++++|+++||++|||++|+||
T Consensus 302 ~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~eq 381 (1204)
T TIGR00917 302 LATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQ 381 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccceEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCC-CCccccchhhhhccCCCCCCCC-
Q 000767 441 LILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDDF- 518 (1294)
Q Consensus 441 vii~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~y~~~~~~~~~~~- 518 (1294)
++++++++..+...++++++++|++++++++++++++. ++++++|+|+||.+ ..|.++|+++|||++.+.++..
T Consensus 382 vii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~~~ 457 (1204)
T TIGR00917 382 LIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPEN 457 (1204)
T ss_pred EEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCccc
Confidence 99887522110112469999999999999999999853 36899999999985 6899999999999876544321
Q ss_pred -------CCcccccccccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHH
Q 000767 519 -------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKA 591 (1294)
Q Consensus 519 -------~~~~~l~~~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~ 591 (1294)
++.+++.+|...+ .+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||++
T Consensus 458 ~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE~~ 533 (1204)
T TIGR00917 458 YDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWEKA 533 (1204)
T ss_pred ccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHHHH
Confidence 2445666776543 4699999999999999999988889999999999999986533 2335789999999
Q ss_pred HHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHH
Q 000767 592 FVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGV 671 (1294)
Q Consensus 592 ~~~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i 671 (1294)
|.+.++++..+. ...+++++|++++++++|+++.+..|++.++++|++|++|+++++++++.+++++++||+++|+.|+
T Consensus 534 f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv 612 (1204)
T TIGR00917 534 FIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGV 612 (1204)
T ss_pred HHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHH
Confidence 999998764321 1235899999999999999999999999999999999999999999877666788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcC--CC---------CHHHHHHHHHhhhh
Q 000767 672 VLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--EL---------PLETRISNALVEVG 740 (1294)
Q Consensus 672 ~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~--~~---------~~~~ai~~al~~~g 740 (1294)
+++++|+++++|+++|+|+++++++++++|||+|||||||+|+++++|++..+ +. +.++|++++++++|
T Consensus 613 ~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G 692 (1204)
T TIGR00917 613 LIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVG 692 (1204)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999998789999999999999999999999987432 22 78999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCC
Q 000767 741 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDK 820 (1294)
Q Consensus 741 ~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~ 820 (1294)
+||++|++|++++|++++++++|++|.||+++|+||+++|++|+|+|||+|+++.||++++|.|++||.+.++.....++
T Consensus 693 ~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~ 772 (1204)
T TIGR00917 693 PSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISAEK 772 (1204)
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987543211111
Q ss_pred CCCCCCccHHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCC
Q 000767 821 GIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGP 900 (1294)
Q Consensus 821 ~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~ 900 (1294)
...+.+++.+.+|++++|+|+++++++|++|+++|++++++|++|+++|+.|+||+.++|+|||+.+||+.++++|+.||
T Consensus 773 ~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gp 852 (1204)
T TIGR00917 773 GSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEVGP 852 (1204)
T ss_pred CcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhccCC
Confidence 11234567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEe-cCCCCchhhhhhccccccccCcchHHHHHHHhccCCCCccccCCccchHHHHHHhhccccccccc-ccCCCC
Q 000767 901 PLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGS 978 (1294)
Q Consensus 901 pv~~Vv~-~~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~-~~~~~~ 978 (1294)
|+|+|++ +.||++++ .|+++|+..+|+++|+.++.+ +.+++.+++.+|+|||++|+++. +.||| ...++.
T Consensus 853 pvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~~------~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~ 924 (1204)
T TIGR00917 853 PVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVFN------NLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTNGT 924 (1204)
T ss_pred cEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhhc------ccchhcCCchHHHHHHHHHhCcc-ccceeecCCCCC
Confidence 9999999 68999875 578999999999999998544 45678889999999999999986 57888 445677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCccccceeccCCC
Q 000767 979 YCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYE 1058 (1294)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~ 1058 (1294)
+|++.+ +.|..|++...-..++|+.++|+++|++|+++.|+..|++||++.|+.++++++.+
T Consensus 925 ~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~ 986 (1204)
T TIGR00917 925 FCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHA 986 (1204)
T ss_pred cCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeecCC
Confidence 876332 35777765222235789999999999999999999999999999999999876544
Q ss_pred CCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1059 NGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCL 1138 (1294)
Q Consensus 1059 ~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~ 1138 (1294)
++.|.+|||+++|+++++++|++++++++|++++++++..++++|||+.+|+|+|||.+|+++++.++++++++|+++++
T Consensus 987 ~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~ 1066 (1204)
T TIGR00917 987 NTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTL 1066 (1204)
T ss_pred CceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999986678999999999999999999999999999999999999999
Q ss_pred HHh-chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhcc-CCCHHHHHHHHHHHh
Q 000767 1139 ITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTM 1216 (1294)
Q Consensus 1139 l~~-~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~-~~~~~~ai~~al~~~ 1216 (1294)
+++ .+++.+++++++|++++++++|+|++||++||++|+++++|++|++|||+.||.|+|... .+++++|+++|++++
T Consensus 1067 l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~~v 1146 (1204)
T TIGR00917 1067 VLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGM 1146 (1204)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 998 488999999999999999999999999999999999999999999999999999999876 358999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1217 GASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1217 g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
|+||+.|+++||++|++||+|+++++|++|||+|++++|++|++|||+||||+||++|
T Consensus 1147 g~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917 1147 GSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999889999999999999999999999999999999999999999999999987
No 2
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-173 Score=1607.54 Aligned_cols=1157 Identities=47% Similarity=0.819 Sum_probs=1031.6
Q ss_pred cCeeecccCCCCCCCCcccCCCCCC-CCCCChhhHHHHHhhCCCCCC---CCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 000767 51 EFCAMYDICGARSDRKVLNCPYNIP-SVKPDDLLSSKVQSLCPTITG---NVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1294)
Q Consensus 51 ~~C~~~g~c~~~~~~~~~~c~~~~~-~~~~~~~~~~~l~~~Cp~~~~---~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1294)
++|+|||.||+++.++.+||+++.| +++.......++++.||.+.. .+||++.|++.|++|+++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5899999999998888999999998 666666677889999999864 599999999999999999999999999999
Q ss_pred hhHHhhccccccCCCCCcceEEEeecccCCCceEEEEEEEEccccchHHhhccccCcccCCChhHHhhcC--CCCcCHHH
Q 000767 127 RNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG--GGAQNFKD 204 (1294)
Q Consensus 127 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~g--g~a~~~~~ 204 (1294)
+||.++||+||||||||.|++|+++... .|++++|+++.+|++++|+|||+|+|+++|++||++++ ++|+|+++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999988532 29999999999999999999999999999999999885 36778999
Q ss_pred HHHhhcccCCCCCCCCceeEEecCCCCCCCCcccCCCCCcCCCCCC-CCccccCCCCCCCCCCCCCCCCCCCCceEeecC
Q 000767 205 WFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGS-LGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGS 283 (1294)
Q Consensus 205 ~~~flG~~~~~~~~~sP~~i~f~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~~~sC~~~~~~~~~~~~~~~~~~~ 283 (1294)
|++|+|++++. .++||+|+|+.+.+.+..+.+||...++|++.. ++|+|+||++ +|+...+++.+.. ++.+|+
T Consensus 157 ~~~f~g~~~~~--~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~--~c~~~~~~~~~~~--~~~v~~ 230 (1201)
T KOG1933|consen 157 WLEFIGDKNPG--QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPE--TCPASLLLKSPTE--TFVVGG 230 (1201)
T ss_pred HHHHhcCCCcc--CCCcceeccccccCCccceeecccccccCCcccccccchhcchh--hcCccccCCCCcc--ceeecc
Confidence 99999999642 579999999988654445899999999999874 9999999999 9997665554444 466666
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccCCCccchhhhhcccccccccccCCccccccchhhh
Q 000767 284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQMLGTPRTRNRIQLSI 363 (1294)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1294)
+..-+...++.++|.+++++|+.+......+.|.+..+.....+ .+ +. ...+
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~~~~~-----------------~~------~~-----~~~~ 282 (1201)
T KOG1933|consen 231 IPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGDDGTPVD-----------------SS------PT-----SDFS 282 (1201)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccccCcccc-----------------CC------cc-----cchh
Confidence 64333333666677777777776655544444332221111100 00 00 0115
Q ss_pred HHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEE
Q 000767 364 VQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELIL 443 (1294)
Q Consensus 364 ~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii 443 (1294)
++..++.+|++||.|+++||.+++.+++.+.+.++.|+.+.+++|||+++|..++|++|+|+++|+.|||||||+||+++
T Consensus 283 ~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi~l 362 (1201)
T KOG1933|consen 283 TETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQIIL 362 (1201)
T ss_pred HHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhhee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCC--CccccchhhhhccCCCCCC-----
Q 000767 444 ATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ--DCATQSVLQYFKMDPKNFD----- 516 (1294)
Q Consensus 444 ~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~--~C~v~S~~~y~~~~~~~~~----- 516 (1294)
.+.+.+.+.. +.+++.+.|++++++|+.++++.... ++++++|+|++|.++ .|.++|++||||+++..++
T Consensus 363 ~~~~~~~~~~-~~i~~~~~l~~vldiq~~v~~~~~~~--~~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~~~ 439 (1201)
T KOG1933|consen 363 TAVNTSSEVY-PPILLVEGLELVLDIQNSVKELLTSS--DNISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKLND 439 (1201)
T ss_pred eccCCccccC-CchHHHHHHHHHHHHHHHHHHhccCC--CccchheeeeeeccCCcchhhhhhHhhhccChhhhhccccc
Confidence 8866554433 34999999999999999999987543 278999999999864 5889999999998876543
Q ss_pred ---CCCCcccccccccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHH
Q 000767 517 ---DFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 593 (1294)
Q Consensus 517 ---~~~~~~~l~~~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~ 593 (1294)
-+.|.+|+.+|.+.|. .|+++|++|++|..++||++++++..|+++++||+++|+..... ..+.+..||++|.
T Consensus 440 ~~~~~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~-~~~~a~~We~~f~ 515 (1201)
T KOG1933|consen 440 SFFMDFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPE-LTDQAVAWEKAFV 515 (1201)
T ss_pred cchhhHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcc-hhhHHHHHHHHHH
Confidence 1356889999998765 69999999999999999998777888999999999999876532 2488999999999
Q ss_pred HHHHhhccccccCCCeE-EEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHH
Q 000767 594 QLAKDELLPMVQSKNLT-LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVV 672 (1294)
Q Consensus 594 ~~v~~~~~~~~~~~~~~-v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~ 672 (1294)
+.++++..+ .+. +.|++|+++++|+++.+..|..+++++|++|++|+.+++++.+.+++++++||+.+++.|++
T Consensus 516 ~~~~~~~~~-----~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy~~mf~yi~~~Lg~~~~~r~vlidSkv~lgi~Gv~ 590 (1201)
T KOG1933|consen 516 NFAKDYLLP-----HLLAISFMAERSIEDEINRESEGDVITVVISYLVMFLYINLALGHYRSCRRVLIDSKVLLGISGVL 590 (1201)
T ss_pred HHHHHHhhh-----ccchheeeccCccchhhccCCcCCceEEEeehHHHHHHHHHHhccCcccceeeeeceeeccccceE
Confidence 999988642 333 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcC--CCCHHHHHHHHHhhhhhHHHHHHHHH
Q 000767 673 LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASLSE 750 (1294)
Q Consensus 673 ~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~--~~~~~~ai~~al~~~g~si~~tslt~ 750 (1294)
++++++.+++|+++++|++.+.++.+|+||+++++|+||+|+++++|+|..+ +.+.+++|.+++.++||+|+.+++.+
T Consensus 591 ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~slse 670 (1201)
T KOG1933|consen 591 IVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSSLSE 670 (1201)
T ss_pred EEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccchhhhccCcHHHHhHHHh
Confidence 9999999999999999999999999999999999999999999999998653 38899999999999999999999999
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHH
Q 000767 751 VLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLL 830 (1294)
Q Consensus 751 ~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l 830 (1294)
..+|+++++++||++|.|++++++++++++++|+|.+.+++.+|.||++.+|.|++||+|.+++. . .+...+.+
T Consensus 671 ~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~~~~r~d~~~~~~~~~~~----~--~~~~~~~~ 744 (1201)
T KOG1933|consen 671 NFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRRLDNRIDIFCCVKPSEEE----S--VRGNEGLL 744 (1201)
T ss_pred hhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhhhcCCcceEecccccccc----c--ccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999987541 1 12233788
Q ss_pred HHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEec-C
Q 000767 831 ARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-Y 909 (1294)
Q Consensus 831 ~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv~~Vv~~-~ 909 (1294)
.+|++.+|+|+++++.+|++++++|.+++.+++++.++|+.|+||+..+|+|||+.+||+.++++++.|||+|+|+++ .
T Consensus 745 ~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Syl~dyF~~~~e~l~~GPPvyfv~k~~~ 824 (1201)
T KOG1933|consen 745 TRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSYLSDYFKNLNEFLNVGPPVYFVLKGGL 824 (1201)
T ss_pred HHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccchhhhHhhhhhhhcccCCCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred CCCchhhhhhccccccccCcchHHHHHHHhccCCCCccccCCccchHHHHHHhhccccccccc-ccCCCCCCCCCCCCCC
Q 000767 910 NYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGSYCPPDDQPPC 988 (1294)
Q Consensus 910 d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~-~~~~~~~~~~~~~~~~ 988 (1294)
+++++. .||++|++.+|+++|+.+++..+.+.++.+++++|..+|+|||+.|++|+. +||| +..++.|||++.++
T Consensus 825 ~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~~~~~-~cCr~~~~~g~fc~~~~~~-- 900 (1201)
T KOG1933|consen 825 DLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWLSPQS-SCCRLKPDPGQFCPPSLND-- 900 (1201)
T ss_pred CCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheeecccC-CccccCCCCCCcCCCCccc--
Confidence 888775 579999999999999999999999999999999999999999999999975 4999 77788999987553
Q ss_pred CCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCccccceeccCCCCCeEEEeEEE
Q 000767 989 CPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFR 1068 (1294)
Q Consensus 989 ~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~ 1068 (1294)
..|.+|....+....+|+.++|+++|++|+++.|+..|++||++.|+.++++.....+.|+|++||
T Consensus 901 --------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~F~ 966 (1201)
T KOG1933|consen 901 --------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASYFM 966 (1201)
T ss_pred --------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCCCCceeeecceEEEecCcccchhhhhh
Confidence 468788755555556899999999999999999999999999999999999886666679999999
Q ss_pred EecccCCchhHHHHHHHHHHHHHHHhhccc-CceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhhH
Q 000767 1069 TYHTPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT-CSFWS 1146 (1294)
Q Consensus 1069 ~~~~~l~~~~d~i~al~~~r~ia~~~~~~~-~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~-~s~~~ 1146 (1294)
+||+++.++.|++++++++|+++.++.+.. +.++|||+.+|+|+|||.+++..+...++++++.||++..+++ .+++.
T Consensus 967 tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~~~s 1046 (1201)
T KOG1933|consen 967 TYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLDVDS 1046 (1201)
T ss_pred hhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999986533 6789999999999999999999999999999999999998876 67899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhccCC-CHHHHHHHHHHHhhHHHHHHHH
Q 000767 1147 SAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGIT 1225 (1294)
Q Consensus 1147 ~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~~~-~~~~ai~~al~~~g~~V~~~~~ 1225 (1294)
+++..+++.|+++.+.|+|++|||++|++|++|++|++|++|||+.||.|.|....+ ++.+|+.+++..+|..++.|++
T Consensus 1047 s~i~~~~~~~~~v~l~g~m~~~~I~~NavS~vNlvm~vgi~vef~~hi~~sf~~s~~~~~~~ra~~~l~s~Gs~v~sgit 1126 (1201)
T KOG1933|consen 1047 SLIMVLVDEMILVNLVGFMYLWGISLNAVSLVNLVMSVGIAVEFCVHITHSFATSSGPDATERAEEALNSIGSSVFSGIT 1126 (1201)
T ss_pred ceeeeeehhhhhhhHHHHHHhhceeehhhhhhhhhhhcchhhhHHHHhhcceeeccCCchhHHHHHHHhccCcceeccee
Confidence 999999999999999999999999999999999999999999999999999998876 8999999999999999999999
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccch
Q 000767 1226 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCML 1281 (1294)
Q Consensus 1226 lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~~~~~ 1281 (1294)
+|++.|.++|.|++++++++|||+|++.+++++++||++|+|++|+++|+..+...
T Consensus 1127 lt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hGliflpvlls~~g~~~~~~~ 1182 (1201)
T KOG1933|consen 1127 LTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVGALHGLIFLPVLLSLLGPESSRAD 1182 (1201)
T ss_pred ehhcCceEEEeeccccEEEEEeehHHHHHHHHHheeeeeehhhHHHhcCCccccch
Confidence 99999999999999999999999999999999999999999999999998877665
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=5.5e-127 Score=1219.95 Aligned_cols=886 Identities=26% Similarity=0.430 Sum_probs=733.8
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCC-CceeEE
Q 000767 363 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPF-YRIEEL 441 (1294)
Q Consensus 363 ~~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~-~r~eqv 441 (1294)
+++.+++++|++||.+|+|||++||+++++++++|++|+.++++||||++||++++|++++|++|||++|||+ ||+||+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccC-------------C--CCccc-----
Q 000767 442 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-------------G--QDCAT----- 501 (1294)
Q Consensus 442 ii~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~-------------~--~~C~v----- 501 (1294)
+|+++++ +|.+++++|.|+++++++++++++++...+++++|+|+|+||. + ..|.+
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9997532 3446999999999999999999997655578999999999997 2 46999
Q ss_pred --------cchhhhhccCCC----CCCCCC--------------Ccccccc-----------cccccCCCcccccc----
Q 000767 502 --------QSVLQYFKMDPK----NFDDFG--------------GVEHVKY-----------CFQHYTSTESCMSA---- 540 (1294)
Q Consensus 502 --------~S~~~y~~~~~~----~~~~~~--------------~~~~l~~-----------~~~~~~~~~~cl~~---- 540 (1294)
+|+.+||+++++ ++++.. |.+++++ |.+.+ +.+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~--d~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPA--DPDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCC--CCCCCCccccc
Confidence 888888888766 444322 4455555 87644 2469998
Q ss_pred -CCCCC--------------------CCCccccCcc---CCcccceeEEEEEEEeec---------------ccCcCc-h
Q 000767 541 -FKGPL--------------------DPSTALGGFS---GNNYSEASAFVVTYPVNN---------------AVDREG-N 580 (1294)
Q Consensus 541 -~~~Pl--------------------~~~~~lGg~~---~~~~~~a~alvit~~l~~---------------~~~~~~-~ 580 (1294)
+++|+ .+++++||++ ++++.+|+|++++|.+++ +.+.+. +
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8899999987 457899999999999987 222111 1
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCccccc
Q 000767 581 ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYI 660 (1294)
Q Consensus 581 ~~~~a~~we~~~~~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v 660 (1294)
..+.+++||++|.+.+++... ...+..+.+...+|+++|+++.++.++..++++|++|++|++++++++ +++
T Consensus 352 a~~va~~We~~F~~~v~~~~~---~~~~~~~~~fss~SL~del~~~s~~~~~~~~is~~lm~~Ya~~~l~~~-----d~v 423 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSLP---KNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRW-----DCA 423 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cccCCceEEEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 124489999999999987532 122334443445999999999999999999999999999999999885 479
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhh
Q 000767 661 SSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVG 740 (1294)
Q Consensus 661 ~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g 740 (1294)
+||+++|+.|++++++|+++++|+++++|+++|.++++++|||+|||||||+|+++|+|++.+++.+.++|++++++++|
T Consensus 424 ~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g 503 (1145)
T TIGR00918 424 KSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTG 503 (1145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997789999999999999999999999998888999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccC--------
Q 000767 741 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS-------- 812 (1294)
Q Consensus 741 ~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~-------- 812 (1294)
+||++|++|++++|++|++++||++|.||++++++++++|++|+|+|||+|++|.||++++|+|++||++.+
T Consensus 504 ~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~~R~D~~cC~~~p~~~~~~~~ 583 (1145)
T TIGR00918 504 ASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQI 583 (1145)
T ss_pred ceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997651
Q ss_pred --CCcCC------------------------------------------CCC---------CCCC---------------
Q 000767 813 --SSYAD------------------------------------------SDK---------GIGQ--------------- 824 (1294)
Q Consensus 813 --~~~~~------------------------------------------~~~---------~~~~--------------- 824 (1294)
....+ .++ +..+
T Consensus 584 ~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 663 (1145)
T TIGR00918 584 EPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDIAGSTRDLLSQFEDSKAACLS 663 (1145)
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 000 0000
Q ss_pred --CCccHHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCE
Q 000767 825 --RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 902 (1294)
Q Consensus 825 --~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv 902 (1294)
.....+.+|++++|+|+|+++++|++|+++|++++++|+||+++++.|+|+++++|+|||+.+|++.+++||+. +|+
T Consensus 664 ~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~DSyl~~yf~~~~~yF~~-~~v 742 (1145)
T TIGR00918 664 LPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNM 742 (1145)
T ss_pred ccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCCCcHHHHHHHHHHhcCc-Cce
Confidence 01145788999999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred EEEEec-CCCCchhhhhhccccccccCcchHHHHHHHhccCCCCccccCC-----ccchHHHHHHhhccc-c--cccccc
Q 000767 903 YFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP-----AASWLDDFLVWISPE-A--FGCCRK 973 (1294)
Q Consensus 903 ~~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~-----~~swlddf~~~l~~~-~--~~cc~~ 973 (1294)
|+|+++ .||.+. |+++ ++..++.++.+++.++ +.+|+|||++|+++. . ++||+.
T Consensus 743 y~V~~~~~dy~~~---q~~l--------------~~l~~~f~~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~ 805 (1145)
T TIGR00918 743 YAVTQGNFDYPTQ---QQLL--------------YDLHQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRD 805 (1145)
T ss_pred EEEeCCCCCchHH---HHHH--------------HHHHHHhccCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhh
Confidence 999984 888543 2222 1222334566677655 479999999999972 2 468873
Q ss_pred --cCCCCCCCCCCCCC-CCCCCCCCCCCCCcccCC---Ccccc-cCC-CCCCCCChhHHHhhHHHHHhcCCCcc------
Q 000767 974 --FTNGSYCPPDDQPP-CCPSGQSSCGSAGVCKDC---TTCFH-HSD-LLKDRPSTIQFKEKLPWFLNALPSAS------ 1039 (1294)
Q Consensus 974 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c---~~c~~-~~~-~~~~~P~~~~f~~~l~~fl~~~p~~~------ 1039 (1294)
...+.||++++... |..+ ..+.+ .++. ..+.. .+. -.+++|++++|++||+.|+++.|..-
T Consensus 806 g~~~~~~~~n~s~~~~~~~~l----~~qtg-~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~ 880 (1145)
T TIGR00918 806 GRITKENYRNGSDDAVLAYKL----LVQTG-HRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQAN 880 (1145)
T ss_pred cccccccccCCccccchhhhh----ccccc-ccCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcchhhccccc
Confidence 23455665443210 0000 00000 0000 00000 001 12578999999999999998755410
Q ss_pred -ccCCCCCccccc-eeccCCC-----CCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhH
Q 000767 1040 -CAKGGHGAYTNS-VDLKGYE-----NGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYF 1112 (1294)
Q Consensus 1040 -c~~gg~~~y~~~-v~~~~~~-----~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~ 1112 (1294)
++.- ..|..+ .++++.+ .+.+..++||+||+++++++|++++++++|+++++++ ..++++||||.+|+|+
T Consensus 881 ~~p~~--~~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~-~~~~~vf~~g~~fvf~ 957 (1145)
T TIGR00918 881 IYPHP--PEWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYE-GFGLPSYPSGYPFLFW 957 (1145)
T ss_pred ccCCc--chhcccccccccccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhh-hcCceeccCCCceeHH
Confidence 0000 011111 1111110 1123345999999999999999999999999999986 4678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeeccee
Q 000767 1113 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCV 1192 (1294)
Q Consensus 1113 eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~i 1192 (1294)
|||.+++..++.++++++++||+++++++++++.++++++++.+++++++|+|++|||+||++|+++++|+||++|||++
T Consensus 958 eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~v~v~G~M~lwgI~LnaVS~vnLimsIGisVefsa 1037 (1145)
T TIGR00918 958 EQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIPVVILIASVGIGVEFTV 1037 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000767 1193 HITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 1272 (1294)
Q Consensus 1193 hi~~~f~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~ 1272 (1294)
||+|+|..+.+++++|+++|+.++|+||+.|+ +||++|+++|+|++++++..+||+|++++|++|++|||+|||++||+
T Consensus 1038 HI~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~-lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~ 1116 (1145)
T TIGR00918 1038 HIALGFLTAIGDRNRRAVLALEHMFAPVLDGA-LSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSM 1116 (1145)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888899999999999999999998 79999999999999988888889999999999999999999999999
Q ss_pred hCCCCccchhhhcccCC
Q 000767 1273 FGPPSRCMLVERQEERP 1289 (1294)
Q Consensus 1273 ~gp~~~~~~~~~~~~~~ 1289 (1294)
+||+.+..+.+..++.+
T Consensus 1117 ~Gp~~~~~p~~~~~~~~ 1133 (1145)
T TIGR00918 1117 FGPEPEVSPAEGRSRLP 1133 (1145)
T ss_pred cCCccccCCCCCCCCCC
Confidence 99998887776666544
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=3e-91 Score=902.74 Aligned_cols=776 Identities=33% Similarity=0.554 Sum_probs=640.6
Q ss_pred hhccccceeccCCCcceeCCCChhHHHHHHhhhccCC----CCceeEEEEEecCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 000767 398 CLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAP----FYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKI 473 (1294)
Q Consensus 398 ~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp----~~r~eqvii~~~~~~~~~~~~~il~~~~L~~i~~l~~~l 473 (1294)
+.|+.++..+.|.. .|.|++++++.|....++-|+. ..+. +++.+.+ .++|+++++.|+++.++++++
T Consensus 2 ~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~--~~i~a~~-----~~~nlL~~~~l~ei~~l~~~I 73 (798)
T PF02460_consen 2 SSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRF--VIIIAKD-----GGSNLLRPEYLDEILQLDDFI 73 (798)
T ss_pred CCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEE--EEEEEec-----CCCCCcCHHHHHHHHHHHHHH
Confidence 45677777788866 8999999999887655555533 3322 2233221 123699999999999999999
Q ss_pred hc-ccccccCccccccccccccCCCCccccchhhhhccCCCCCCCCCCcccccccccccCCCccccccCCCCCCCCcccc
Q 000767 474 DG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALG 552 (1294)
Q Consensus 474 ~~-l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~cl~~~~~Pl~~~~~lG 552 (1294)
.+ ++..++++.++++|+|.++-+..|..++..++...... .+ ..-.+.++ +...++.|+.....+|
T Consensus 74 ~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~ltyP---------~~~~~~~~~~l~~~~g 140 (798)
T PF02460_consen 74 MNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNR-SN---DNINLTYP---------IMNIFGQPIFLGPNFG 140 (798)
T ss_pred HHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhc-cC---CceeecCC---------ccCCCCcccccCceec
Confidence 87 66666677899999999986678888887765211100 00 01112222 3445678888888888
Q ss_pred CccC----CcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhc
Q 000767 553 GFSG----NNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKREST 628 (1294)
Q Consensus 553 g~~~----~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~ 628 (1294)
|++. +.+.+|++++++|.++... ++..+.+++||+++.+.++++. ...++++++.+++++++|+.+.+.
T Consensus 141 gv~~~~~~~~i~~a~a~~l~y~l~~~~---~~~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~~~ 213 (798)
T PF02460_consen 141 GVTTDPDNGNIESAKAVVLTYMLNTDD---EEQEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRNSQ 213 (798)
T ss_pred CccccCCcchhheeEEEEEEEEccccc---chhhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHHHH
Confidence 8752 3578899999999997432 2345678899999998887652 234799999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcc
Q 000767 629 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 708 (1294)
Q Consensus 629 ~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIG 708 (1294)
.+.+.+.+++++|++|+.+.+.+.+....++++||+++|+.|++++++|+++++|++.++|+++++ +..++|||+||||
T Consensus 214 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIG 292 (798)
T PF02460_consen 214 TLVPLFAIGFALMFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIG 292 (798)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHH
Confidence 999999999999999999887765545667899999999999999999999999999999999998 5789999999999
Q ss_pred cCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 709 VDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFV 788 (1294)
Q Consensus 709 vD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~p 788 (1294)
|||+|+++++|++..+..+.+||++++++++|+||++||+|++++|++|+++++|++|.||++++++|+++|++|+|+|+
T Consensus 293 vDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~ 372 (798)
T PF02460_consen 293 VDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFP 372 (798)
T ss_pred HhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccCcccccccccCCCcC-----CCCC-CCCCCCccHHHHHHHhHhhccccccceeeehHHHHHHHHHHH
Q 000767 789 ALIVFDFLRAEDKRVDCIPCLKLSSSYA-----DSDK-GIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLAS 862 (1294)
Q Consensus 789 alL~l~~~r~~~~r~d~~~c~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~s 862 (1294)
|+|+++.||++.+|++++||.+..+... ...+ ....+....+.++++++|+|++.++++|++++++|++++++|
T Consensus 373 a~l~l~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~s 452 (798)
T PF02460_consen 373 AILVLDGRREAAGRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVS 452 (798)
T ss_pred HHHHHHHHHHHhcccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999964322110 0000 011123346788999999999999999999999999999999
Q ss_pred hhhhhccCCCCcccccCCCCchhhhHHHHHHhhc-cCCCCEEEEEec-CCCCchhhhhhccccccccCcchHHHHHHHhc
Q 000767 863 IALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL-RIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRAS 940 (1294)
Q Consensus 863 i~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~-~~g~pv~~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~ 940 (1294)
+||+.+++.|+|+++++|+|||+.+|++..+++| +.|+|+++++++ .|+++++. |+++ .++.+++++..
T Consensus 453 iyG~~~i~~gld~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~-~~~l--------~~lv~~fe~~~ 523 (798)
T PF02460_consen 453 IYGCTQIKEGLDPEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPEN-QDRL--------NSLVQEFENSP 523 (798)
T ss_pred HHhhcccCCCCChhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchHH-HHHH--------HHHHHHHhccc
Confidence 9999999999999999999999999999998887 568999999985 78888754 4443 35555555431
Q ss_pred cCCCCccccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCC
Q 000767 941 LIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPS 1020 (1294)
Q Consensus 941 ~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~ 1020 (1294)
.....+++.+|++||.+|+++....+ . ++ .+
T Consensus 524 ----~~~~~~~t~~WL~~y~~~l~~~~~~~---------~--~~----------------------------------~~ 554 (798)
T PF02460_consen 524 ----YSIGNNSTSFWLRDYLNFLNSINSSF---------Q--DD----------------------------------ND 554 (798)
T ss_pred ----cccccccchhhHHHHHHHHhhccccc---------c--cc----------------------------------cc
Confidence 12233456889999999997521000 0 00 00
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCccccceecc--CCCCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhccc
Q 000767 1021 TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL 1098 (1294)
Q Consensus 1021 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~--~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~ 1098 (1294)
.+.|+..+++|+...+. ..|..++.++ +.+...|.++||++.+++..+.++.++.++++|+++++++
T Consensus 555 ~~~~~~~l~~FL~~~~~--------~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~--- 623 (798)
T PF02460_consen 555 KEFFYNLLPEFLNSPEY--------RHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYS--- 623 (798)
T ss_pred ceeeeccchhhhccccc--------cccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcce---
Confidence 12356777888876332 2355555553 2345679999999999999999999999999999998774
Q ss_pred CceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Q 000767 1099 QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVV 1178 (1294)
Q Consensus 1099 ~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv 1178 (1294)
++++++|+..+.++|||.++.+++++++++|++++++++++++.+++.+++++++++++.++++|+|++||++||++|++
T Consensus 624 ~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~v 703 (798)
T PF02460_consen 624 DFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSMV 703 (798)
T ss_pred ecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhheeecceeeeehhhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q 000767 1179 NLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLL 1257 (1294)
Q Consensus 1179 ~lvi~iGi~VD~~ihi~~~f~~~~~-~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~ 1257 (1294)
+++|+||++|||++|++|+|..+.+ ++++|+++|++.+|+||+.|+ +||++|+++|+|+++++++.| |+++++++++
T Consensus 704 ~l~~~iG~sVd~~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~-~st~l~~~~l~f~~~~~~~~f-f~~~~l~~~~ 781 (798)
T PF02460_consen 704 NLIMSIGFSVDFSAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGA-LSTFLGVLPLAFSPSYIFRVF-FKTVFLVIIF 781 (798)
T ss_pred HHHHHhchhhHHHHHHHHHheecccchHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999887 899999999999999999998 588999999999999999986 6877788999
Q ss_pred HHHHHHHHHHHHHhhh
Q 000767 1258 GFLHGLVFLPVVLSVF 1273 (1294)
Q Consensus 1258 g~l~~LvlLPvlLs~~ 1273 (1294)
|++|||++||++|+++
T Consensus 782 ~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 782 GLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999987
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-89 Score=856.12 Aligned_cols=810 Identities=24% Similarity=0.426 Sum_probs=671.9
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCC---cee
Q 000767 363 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFY---RIE 439 (1294)
Q Consensus 363 ~~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~---r~e 439 (1294)
.+++.+.++|+++|.+++||||..++++++++++++.|+..++.+.|+.++|.|.|+++|.|.+.+.+.++-++ +..
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 57888999999999999999999999999999999999888888999999999999999999999999887633 222
Q ss_pred EE-EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhc-ccccccCccccccccccccCCCCccccchhhhhccCCCCCCC
Q 000767 440 EL-ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDD 517 (1294)
Q Consensus 440 qv-ii~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~-l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~ 517 (1294)
+- ++... +++++++++.++++.++.+.+.+ ++...++...++.|+|.+.-+..|..+......+.+..
T Consensus 84 ~~~~~~~~------~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~---- 153 (868)
T KOG1934|consen 84 IFRFIYLK------DGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTI---- 153 (868)
T ss_pred eEEEEEec------cCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccC----
Confidence 21 12221 35689999999999999999985 55555667789999998865556655554444433211
Q ss_pred CCCcccccccccccCCCccccccCCCCCCCCccccCcc----CCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHH
Q 000767 518 FGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 593 (1294)
Q Consensus 518 ~~~~~~l~~~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~----~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~ 593 (1294)
.+..-.+.|+ -+..+|.|++....+||++ ++++.+++++++.|.++..++ +..+.+.+||+++.
T Consensus 154 ~~~~~~lTYP---------~~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~---~~~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 154 SRPQFNLTYP---------ITEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTD---ETEQVAKEWERSLE 221 (868)
T ss_pred CCCceEEecC---------ccccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCc---chHHHHHHHHHHHH
Confidence 0001123332 2345667777777888874 346789999999999985432 35678999999999
Q ss_pred HHHHhhccccccCCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHH
Q 000767 594 QLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVL 673 (1294)
Q Consensus 594 ~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~ 673 (1294)
+.++++. ++..+++++.+...+.+|+.+....-++.+.+++++|++|..+... ..+|++||++++++|+++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f~il~~F~~~t~~-----~~~~v~SKp~lai~g~l~ 292 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGFAILVIFSILTSF-----MIDWVRSKPILAILGVLS 292 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHHHHHHHHHHHhhc-----chhhhhhhHHHHHHHHHh
Confidence 8887653 3444999999999999999999999999999999999999877643 346799999999999999
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000767 674 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLA 753 (1294)
Q Consensus 674 v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~ 753 (1294)
.++|.++++|++.|+|++++. +..++|||++||||||+|+++++|+|+++..+.++|++++++++||||++||+|.+++
T Consensus 293 p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SItITSlTn~ls 371 (868)
T KOG1934|consen 293 PVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSITITSLTNVLS 371 (868)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCC-----CCCCCCCcc
Q 000767 754 FAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSD-----KGIGQRKPG 828 (1294)
Q Consensus 754 F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~-----~~~~~~~~~ 828 (1294)
|++|.+++.|++|.||+++++|++++|++|+|||.|+|++.++|+.+++++.++|...+.++.... +.....++.
T Consensus 372 FgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 451 (868)
T KOG1934|consen 372 FGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLEKTEEQKSSSSSSSSSLHNP 451 (868)
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCccccccccccCcccccccccc
Confidence 999999999999999999999999999999999999999999999999988777655443321100 001123445
Q ss_pred HHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccC-CCCEEEEEe
Q 000767 829 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI-GPPLYFVVK 907 (1294)
Q Consensus 829 ~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~-g~pv~~Vv~ 907 (1294)
...+++++.|+|+++++++|..+++++++++.+++||+.+++.|+|+.+++|+|||+.++++..++++.. |.++.++|.
T Consensus 452 ~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~ 531 (868)
T KOG1934|consen 452 ILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSLRLQEKYFWEYGQQVAVFVN 531 (868)
T ss_pred hHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHHHHHHHHhhccCceEEEEEc
Confidence 6788999999999999999999999999999999999999999999999999999999999999999854 688999998
Q ss_pred c-CCCCchhhhhhccccccccCcchHHHHHHHhccCCCCccccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCC
Q 000767 908 N-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP 986 (1294)
Q Consensus 908 ~-~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~ 986 (1294)
+ .|+++++...+ + +++.+.++.. +.+...+.+..|++||.+|.... +....
T Consensus 532 np~dl~~~~~~~~-~--------~~~~~~fE~~----~~~~G~~sT~~wlr~y~~~~~~~---------~~~~~------ 583 (868)
T KOG1934|consen 532 NPPDLSNPENRDN-L--------NELVSEFEST----PYSMGRESTKFWLREYLNFLFEK---------NAELE------ 583 (868)
T ss_pred CCccCCCHHHHHH-H--------HHHHHHHhcC----CcccCcccchhHHHHHHHHHhhh---------ccccc------
Confidence 5 88887754322 1 3455555443 22334455678999999985421 11100
Q ss_pred CCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhHH-HHHhcCCCccccCCCCCccccceeccC--CCCCeEE
Q 000767 987 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLP-WFLNALPSASCAKGGHGAYTNSVDLKG--YENGIVQ 1063 (1294)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~l~-~fl~~~p~~~c~~gg~~~y~~~v~~~~--~~~~~I~ 1063 (1294)
..+++|+..+. +|+.. | +...+.+++.++. +++..+.
T Consensus 584 --------------------------------~~~~~~~~~~~~~fl~~-~-------~~~~~~~di~~~~~~~~~~~i~ 623 (868)
T KOG1934|consen 584 --------------------------------DNDDEFYDHLYESFLKS-P-------EFSFWRNDIVFDNKSDEETIIF 623 (868)
T ss_pred --------------------------------CCCcchhhhhHHHHhcc-c-------ccccCccceEeccCCCCCceEE
Confidence 00223444443 33332 2 2234666666542 3456788
Q ss_pred EeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 000767 1064 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 1143 (1294)
Q Consensus 1064 as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s 1143 (1294)
+++|.+..++..+.+|-.++++.+|++++++ .++++..|...+.|.|||.++...++.++++++++++++++++..+
T Consensus 624 ~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~---~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~ 700 (868)
T KOG1934|consen 624 AFRFTIGLTNLTKWNERTRLLETWRKIADEY---SDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPN 700 (868)
T ss_pred EEEEEEEEeccCCHHHHHHHHHHHHHHHhhc---cCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 8899988899999999999999999999987 3578888888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhccCC--CHHHHHHHHHHHhhHHHH
Q 000767 1144 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG--DKNQRMKEALGTMGASVF 1221 (1294)
Q Consensus 1144 ~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~~~--~~~~ai~~al~~~g~~V~ 1221 (1294)
+...+++.++++.+.+|++|+|.+||++||++|++.++|+||++|||++|+.++|..+++ ++++|+++|++.+|+||+
T Consensus 701 ~~~~~~it~si~SI~~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~ 780 (868)
T KOG1934|consen 701 PLCVFWITLSIVSINIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVL 780 (868)
T ss_pred hHHHHHHHHHHhheeehHhhhhHHhcCCccHHHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999998877 899999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1222 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1222 ~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
+|+ ++|++|+++|+|.+++++++| |+++++++.+|++|||++||++|+.+.+..
T Consensus 781 Qa~-lSTiL~v~pL~~V~sYmv~vF-~KTv~LVv~~GllHGLv~LPviLs~f~~~~ 834 (868)
T KOG1934|consen 781 QAG-LSTILGVLPLLFVPSYMVQVF-FKTVVLVVTLGLLHGLVFLPVILSLFPPIK 834 (868)
T ss_pred hhh-hHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 998 599999999999999999998 688888999999999999999999998643
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-77 Score=692.10 Aligned_cols=880 Identities=26% Similarity=0.415 Sum_probs=668.9
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCC-CCceeEE
Q 000767 363 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAP-FYRIEEL 441 (1294)
Q Consensus 363 ~~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp-~~r~eqv 441 (1294)
+....+++++.++|.++.||-|.+|.+++++..+|++|+...++|||.++||+..+++..+|..|..+ .|. ..-+.|+
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~-lgee~~~~~Q~ 132 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPE-LGEENGLTGQL 132 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccc-cchhcCCCcee
Confidence 46778899999999999999999999999999999999999999999999999999999999998733 332 2233489
Q ss_pred EEEecCCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCC---------------Cccccchhh
Q 000767 442 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ---------------DCATQSVLQ 506 (1294)
Q Consensus 442 ii~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~---------------~C~v~S~~~ 506 (1294)
+|.++. .+|.|+++++.|....++-.++...++..-++.+++.|+|+||.+. .|.+..|++
T Consensus 133 lIQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlD 208 (1143)
T KOG1935|consen 133 LIQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLD 208 (1143)
T ss_pred EEECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchh
Confidence 998753 2466899999999999998888877665557889999999998641 688877776
Q ss_pred hh-ccCC----C------------CCCCCCCcccc------------------------cccccccCCCcccccc-----
Q 000767 507 YF-KMDP----K------------NFDDFGGVEHV------------------------KYCFQHYTSTESCMSA----- 540 (1294)
Q Consensus 507 y~-~~~~----~------------~~~~~~~~~~l------------------------~~~~~~~~~~~~cl~~----- 540 (1294)
.| ++.. . +++...-++.+ ..|++. .+.+|-++
T Consensus 209 CfWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~P--ldp~CP~sApn~~ 286 (1143)
T KOG1935|consen 209 CFWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLNP--LDPECPPSAPNKN 286 (1143)
T ss_pred hhcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCCC--CCCCCCCCCcccc
Confidence 54 3210 0 11100000000 122221 11233221
Q ss_pred CCCCCCC--------------------CccccCccC---CcccceeEEEEEEEeeccc----------------CcCchh
Q 000767 541 FKGPLDP--------------------STALGGFSG---NNYSEASAFVVTYPVNNAV----------------DREGNE 581 (1294)
Q Consensus 541 ~~~Pl~~--------------------~~~lGg~~~---~~~~~a~alvit~~l~~~~----------------~~~~~~ 581 (1294)
.-+|.+. .+++||... ....+|+|++-++.+-... ..+...
T Consensus 287 s~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a 366 (1143)
T KOG1935|consen 287 SPQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKA 366 (1143)
T ss_pred CCCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHH
Confidence 1122221 134555432 2345677776555442100 011112
Q ss_pred hHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccc
Q 000767 582 TKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIS 661 (1294)
Q Consensus 582 ~~~a~~we~~~~~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~ 661 (1294)
.+...+|++.|.+.+.+.+. .+.-+++..+..++.|-+.+.+.-....++++|++|.+|..+.+.||. +.++
T Consensus 367 ~~vl~awQrnf~~~~~~~~~----~~~~~ih~fsStsldDiL~~Fs~~s~~~iv~gy~lm~~ya~~t~lr~~----~~~~ 438 (1143)
T KOG1935|consen 367 AEVLQAWQRNFTKRVYQHLA----NERRQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRWW----DAVQ 438 (1143)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhcceecccccccHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhh----hhhc
Confidence 34457899999988877654 256678888888999999999999999999999999999999887743 3588
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhh
Q 000767 662 SKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGP 741 (1294)
Q Consensus 662 Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~ 741 (1294)
|...+|++|++.+.+|.++++|+..++|+.+|...+.++|||.||+||||+|.+.|+|++..+. +++++.-++++|.
T Consensus 439 sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~---~~~~~~~lk~tG~ 515 (1143)
T KOG1935|consen 439 SQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL---HEEMGELLKETGM 515 (1143)
T ss_pred cccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh---HHHHHHHHHHhCc
Confidence 9999999999999999999999999999999998999999999999999999999999997654 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCC----
Q 000767 742 SITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD---- 817 (1294)
Q Consensus 742 si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~---- 817 (1294)
||++||+.++.+|+.+++.++|++|.||+.+|+-+.++|+..+++|||++++|.||++.+|.|++||....++...
T Consensus 516 Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~~r~Di~cc~~~~p~~~~~~~~ 595 (1143)
T KOG1935|consen 516 SVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKAGRRDIFCCFRGNPEMATSQSV 595 (1143)
T ss_pred chhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeEeccCCcccCcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875332100
Q ss_pred --------------CCCC-----CCCCC---ccHHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCcc
Q 000767 818 --------------SDKG-----IGQRK---PGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ 875 (1294)
Q Consensus 818 --------------~~~~-----~~~~~---~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~ 875 (1294)
+..+ ..+.. .--+..|.+.+|+|+++++.+|..|++.|.+++++|+||+.+.+.|++.
T Consensus 596 p~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg~~allg~slyg~t~~~~GLel 675 (1143)
T KOG1935|consen 596 PSNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVGFLALLGASLYGMTRSTDGLEL 675 (1143)
T ss_pred CcccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHHHHHHHHhhhhheeeecccchh
Confidence 0000 00011 1137889999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHhhccCCCCEEEEEec-CCCCchhhhhhccccccccCcchHHHHHHHhccCCCCccccCC---
Q 000767 876 KIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP--- 951 (1294)
Q Consensus 876 ~~~lp~dS~~~~~~~~i~~~~~~g~pv~~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~--- 951 (1294)
.+.+|+++.-.++.+..++||+. .|+|.|+++ .||.+.+ +.+ +++-+.+. ...++.++
T Consensus 676 ~DvvP~~t~~~~FL~Aq~kyFsf-Y~m~aVtqg~~dyp~qQ---~ll--------~dyh~sf~------s~k~vik~~n~ 737 (1143)
T KOG1935|consen 676 TDVVPEHTAEAAFLRAQDKYFSF-YPMFAVTQGPFDYPHQQ---QLL--------DDYHQSFG------SSKYVIKNENE 737 (1143)
T ss_pred hhcCCCCCcHHHHHHHHhhhccc-chhheeecCCCCcccHH---HHH--------HHHHHHhc------cCceeecCCCC
Confidence 99999999999999999999985 599999996 7876542 221 12222222 22233221
Q ss_pred --ccchHHHHHHhhcccc--cccccccCCCCCCCCCCCCCCCCCCCCCCCC-----CCcccCCCccc-ccCCCCCCCCCh
Q 000767 952 --AASWLDDFLVWISPEA--FGCCRKFTNGSYCPPDDQPPCCPSGQSSCGS-----AGVCKDCTTCF-HHSDLLKDRPST 1021 (1294)
Q Consensus 952 --~~swlddf~~~l~~~~--~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~c~~c~-~~~~~~~~~P~~ 1021 (1294)
...|+.-|.+|+.... ++- ....+.+.....-+ +.-++...++ .+...+|..-. +.+-.+.+.-.+
T Consensus 738 ~l~~~Wl~~~r~WL~~lq~~fde--d~a~G~~~~~~~v~--n~S~d~~lA~kL~~qtG~~~~~~~~l~k~rlVd~giInp 813 (1143)
T KOG1935|consen 738 QLPKYWLHLFRDWLQSLQRAFDE--DWAKGRFTLTSGVS--NGSEDARLAYKLLCQTGSLDNDAGRLGKIRLVDAGIINP 813 (1143)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH--HHhcCccccccCCC--CCChHHHHHHHHHHhcCCccchhHhhhhhhhhhccccCH
Confidence 2469999999986421 110 00111111100000 0000000111 11112222111 112223455567
Q ss_pred hHHHhhHHHHHhcCCCccccCC-----CCCccccceeccC--CCCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHh
Q 000767 1022 IQFKEKLPWFLNALPSASCAKG-----GHGAYTNSVDLKG--YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRV 1094 (1294)
Q Consensus 1022 ~~f~~~l~~fl~~~p~~~c~~g-----g~~~y~~~v~~~~--~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~ 1094 (1294)
+.||.||..|.+.-|-.-...- -+..|..+.+..+ -....+..++|..|...+.+..+++++++..|..++++
T Consensus 814 ~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~ 893 (1143)
T KOG1935|consen 814 EAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGLTDTADIVKAIESIRASCEEY 893 (1143)
T ss_pred HHHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 8999999988764221000000 0011111101000 01233555678888999999999999999999999999
Q ss_pred hcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 000767 1095 SDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNA 1174 (1294)
Q Consensus 1095 ~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~ 1174 (1294)
. ..|..-||-|+.++|.|||.++..+.+..+.+-++.+|.++.+++.+.|++.+++..+.+..+.++|+|++.||.+|+
T Consensus 894 ~-s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~ 972 (1143)
T KOG1935|consen 894 T-SLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAGLIVCSLAIMTVELFGFMGLLGIKLSA 972 (1143)
T ss_pred c-cCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhceeecc
Confidence 7 578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhheeecceeeeehhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 000767 1175 VSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLAL 1254 (1294)
Q Consensus 1175 vslv~lvi~iGi~VD~~ihi~~~f~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~ 1254 (1294)
++.|.++.+||++|+|++|+.-.|..+-+++..|...|+..+..|+..|+ ++|.+|++.|+++++..+..|||..+.++
T Consensus 973 i~aViLi~sVGigveFtvhv~l~FlTs~G~rs~R~s~al~~~F~Pv~hG~-lST~lgv~MLs~S~FdFvVryFf~~ltvl 1051 (1143)
T KOG1935|consen 973 IPAVILIASVGIGVEFTVHVALGFLTALGTRSQRASSALQHMFVPVSHGA-LSTLLGVLMLSFSEFDFVVRYFFAVLTVL 1051 (1143)
T ss_pred chhHHHHHHhhhchhhhHHHHHHHHHhhccchhHhHHhhhhcchhhhhhH-HHHHhhHheeccCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 69999999999999999888989988888
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCccchhhh
Q 000767 1255 VLLGFLHGLVFLPVVLSVFGPPSRCMLVER 1284 (1294)
Q Consensus 1255 v~~g~l~~LvlLPvlLs~~gp~~~~~~~~~ 1284 (1294)
+.+|.++||++||||||++||+++..+.+.
T Consensus 1052 ~~lGv~ngL~~lPVlLS~~GP~pEl~p~~g 1081 (1143)
T KOG1935|consen 1052 TCLGVLNGLVVLPVLLSLVGPKPELSPTDG 1081 (1143)
T ss_pred HHHHHhccchHHHHHHHhcCCCcccccCCC
Confidence 999999999999999999999877655443
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-60 Score=580.34 Aligned_cols=719 Identities=16% Similarity=0.243 Sum_probs=521.5
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEecCCCCC
Q 000767 372 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTH 451 (1294)
Q Consensus 372 f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~~~~~~ 451 (1294)
|.++++++.+||+.++++.+++++++++|+.+++++++..+ ++|+|++.++.++.++++|| ..++.+.+..+
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~~~~-~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~ie----- 73 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTET-FLPKDNEEYKNYDRLYKEFG--SGTSLIVVVIE----- 73 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCCccc-cCCCchHHHHHHHHHHHhhC--CCCceEEEEEe-----
Confidence 78999999999999999999999999999999999999664 59999999999999999998 23345555542
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCC-CCCCCCCCcccccccccc
Q 000767 452 GNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDP-KNFDDFGGVEHVKYCFQH 530 (1294)
Q Consensus 452 ~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~-~~~~~~~~~~~l~~~~~~ 530 (1294)
+.|+++++.++.++++++++++++.+. ++ .|+..++.... ..+.+.. +....-.
T Consensus 74 --~~dv~~~e~~~~~~~l~~~l~~i~gV~--~v-----------------~Spa~~~~~~~~g~iP~~~--~~i~~~~-- 128 (727)
T COG1033 74 --GDDVFSPEVLEALDSLEERLEEIPGVS--SV-----------------FSPADLLRQVGYGRIPDSD--SKISEVI-- 128 (727)
T ss_pred --CCCCCCHHHHHHHHHHHHHHhcCCCce--ec-----------------cCHHHHhhhccCCCCCCch--hhhHHHH--
Confidence 346999999999999999999976431 12 24444443221 1111100 0000000
Q ss_pred cCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccCCCeE
Q 000767 531 YTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT 610 (1294)
Q Consensus 531 ~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~~~~~ 610 (1294)
.. .... ..+ ++. ..++...+...+ ++. .++..+..++..+....+++.+
T Consensus 129 -----------~~---~~~l---~~d----~~~-~~i~i~~~~~~~------~~~---~~~i~~~~~~~~e~~~~~~~~~ 177 (727)
T COG1033 129 -----------ES---NSLL---SPD----NTH-TLIIIKLESDKN------DAQ---KEEIYEEIERIIEIAKFPSGVK 177 (727)
T ss_pred -----------hh---hccc---CCc----ccc-eEEEEecCcchh------hHH---HHHHHHhhhhhhhhhcCCCCCe
Confidence 00 0000 001 111 223344432111 110 0111111121111111356899
Q ss_pred EEEccchhHHHHHHhhhccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 000767 611 LAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 689 (1294)
Q Consensus 611 v~~~g~~s~~~el~~~~~~d~~~-~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~G 689 (1294)
.+.+|+..+.+.+.+....|+.. ..++.++|++.+.+.+|++ ..++.+++++++|++|++|+|+|+|
T Consensus 178 ~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~------------~~~llpL~~~l~sv~~tlG~m~llG 245 (727)
T COG1033 178 LYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSV------------RRALLPLIIVLVSVLWTLGAMGLLG 245 (727)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999875 4677778888777777764 3379999999999999999999999
Q ss_pred cccchhhHHHHHHHhhhcccCceEehhHHHHHhc-CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHH
Q 000767 690 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 768 (1294)
Q Consensus 690 i~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~-~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F 768 (1294)
+|++. ++...|.+++|+|+||++|+.+||.++. .+.+.++|+.+|++++|+|++++.+||++||+++.++++|++++|
T Consensus 246 ~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~ 324 (727)
T COG1033 246 IPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEF 324 (727)
T ss_pred CCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99998 7999999999999999999999999864 668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhcccccccee
Q 000767 769 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVK 848 (1294)
Q Consensus 769 ~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r 848 (1294)
|+.+.+|++.+++.++++.|+++.+..+..+ ++. +.+. .+.+.+...+.+ .+.+..++++
T Consensus 325 Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~-~~~------~~k~-----------~~~~~~~~~l~~-i~~~~~~~~~- 384 (727)
T COG1033 325 GILLSIGIILAFLSSLTVLPALLILIPKGRK-KRE------EKKD-----------SKKGKLEKRLSK-IAKIIARHPV- 384 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHhhh-hhh------hccc-----------ccchhHHHHHHH-HHHHhHhhhH-
Confidence 9999999999999999999998887655432 110 0000 111222222222 2445555543
Q ss_pred eehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhccccccccC
Q 000767 849 IAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCD 928 (1294)
Q Consensus 849 ~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~d~~~~~~~~~~ic~~~~c~ 928 (1294)
.++++.+++.+++.||..+++.+.|.++++|+|++..+.++.+++++++..+++++++..|-.+|+..+ .+
T Consensus 385 -~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~~l~-~m------- 455 (727)
T COG1033 385 -TVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPEVLR-WM------- 455 (727)
T ss_pred -HHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChHHHH-HH-------
Confidence 456666788899999999999999999999999999999999999999999999999976656664321 11
Q ss_pred cchHHHHHHHhccCCCCccccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcc
Q 000767 929 SNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTC 1008 (1294)
Q Consensus 929 ~~sl~~~l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c 1008 (1294)
+++.+.+++.+ +...+..| +-|..+..+.
T Consensus 456 -d~l~~~l~~~~------~~V~s~~s-iv~~vk~~~~------------------------------------------- 484 (727)
T COG1033 456 -DELEEELEKGE------EHVFSASS-IVDLVKQVNG------------------------------------------- 484 (727)
T ss_pred -HHHHHHHHhcc------eeeeccch-HHHHHHHHhc-------------------------------------------
Confidence 23333333221 10111111 2222222110
Q ss_pred cccCCCCCCCCChhHHHhhHHHHHhcCCCccccCCCCCccccceeccCCCCCeEEEeEEEEecccCCchhHHHHHHHHHH
Q 000767 1009 FHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAR 1088 (1294)
Q Consensus 1009 ~~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r 1088 (1294)
...|+..+ +...++..|+..-. .| +++....- ........++|+....++..
T Consensus 485 -------~~~p~~~~----~~~i~~~~~~~~~~-----~~--------~s~~~~~~----~~~~~~~~~~~~~~~~~~~~ 536 (727)
T COG1033 485 -------GIIPDKSK----IQIILEELPESIKK-----RY--------ISGDQLNL----LGYSLGDTQGELEDVGREIL 536 (727)
T ss_pred -------CCCCcchh----HHHHHHhcchhHhh-----cc--------cCCCceee----eecccccchhHHHHHHHHHH
Confidence 00121111 11222222322100 11 00111000 00111234455555554443
Q ss_pred HHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1089 EFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAIL 1168 (1294)
Q Consensus 1089 ~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~ 1168 (1294)
+-.++...++|++++.+|..+++.+-.+.+.++...+..+++++|++++++.+||+..+++.++|+.+++.+.+|+|+++
T Consensus 537 ~~i~~~~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~~~i~~iipi~~~v~~~~~~M~l~ 616 (727)
T COG1033 537 RDIEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNFGLMGLL 616 (727)
T ss_pred HHHHhhcCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334568889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhhhheeecceeeeehhhhccCC-C-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHH
Q 000767 1169 KIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-D-KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1246 (1294)
Q Consensus 1169 gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~~~-~-~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f 1246 (1294)
||++|+.|+....+.+|++|||+||++++|+++++ . +++|+.+|++++|.+|+.++ +|+.+||++|.||+++++..|
T Consensus 617 gI~~~~~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~-ltt~~GF~aLi~S~f~i~snf 695 (727)
T COG1033 617 GIPLTPATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASA-LTTAIGFLALIFSPFPIISNF 695 (727)
T ss_pred CCchhHHHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHH-HHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999998864 3 89999999999999999997 799999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1247 YFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1247 ~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
+.+....++++++.+|+++|++|-++.++.
T Consensus 696 -Gll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 696 -GLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 455566789999999999999999987653
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=1.9e-54 Score=557.92 Aligned_cols=711 Identities=14% Similarity=0.151 Sum_probs=494.1
Q ss_pred ccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEecCCCCCCCCCCCCcH
Q 000767 381 RNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 460 (1294)
Q Consensus 381 r~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~~~~~~~~~~~il~~ 460 (1294)
||||.++++.+++++++++|+.++++++|+. .|+|+|+|.++..+.++++||.. ..++.+..+ +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~fg~~--~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTE-KQLPKDFESYKWYHVLQREFGTS--TKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChh-hhCCCCCHHHHHHHHHHHHHCCC--CeEEEEEEE-------eCCCCCH
Confidence 7999999999999999999999999999997 57999999999999999999832 233333331 2459999
Q ss_pred HHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCCC--CCCCCCCcccccccccccCCCcccc
Q 000767 461 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPK--NFDDFGGVEHVKYCFQHYTSTESCM 538 (1294)
Q Consensus 461 ~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~cl 538 (1294)
+.++++.++++++++++.. ++..|..| +....+. ...+ ..+.++...+.
T Consensus 72 ~~l~~i~~l~~~l~~~~~V--~~v~s~~~-----------------~~~~~~~~~~~p~--~~~~~~~~~~~-------- 122 (719)
T TIGR00921 72 PVLDYMRRLEQRLREKPYV--TNVRSAAD-----------------IMRQIPGNFPLPV--TMPEVRPLMSE-------- 122 (719)
T ss_pred HHHHHHHHHHHHHhcCCCc--ceeecHHH-----------------HHHHhcCCCcCCC--CHHHHHHHHHh--------
Confidence 9999999999999986532 23333333 2211000 0100 00011100000
Q ss_pred ccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchh
Q 000767 539 SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESS 618 (1294)
Q Consensus 539 ~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~~~~~v~~~g~~s 618 (1294)
+ |... +.+..+ +.+...+...+++..+ .+...+-.+++.+.++++ ..+++++++++|...
T Consensus 123 --~--~~~~----~~~~s~---d~~~~~i~v~~~~~~~-----~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~G~~~ 182 (719)
T TIGR00921 123 --Y--PRSK----EMFLSK---DHTVAIIIVQLKSDAD-----YKQVVPIYNDVERSLERT----NPPSGKFLDVTGSPA 182 (719)
T ss_pred --C--cHHH----HhccCC---CCceEEEEEEecCCCC-----hHHHHHHHHHHHHHHhcc----CCCCCcEEEecCcHH
Confidence 0 0000 001111 1233445555543211 111111111222222221 134579999999998
Q ss_pred HHHHHHhhhccchH-HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 000767 619 IEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIM 697 (1294)
Q Consensus 619 ~~~el~~~~~~d~~-~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~ 697 (1294)
+..++.+....+.. .+.++++++++.+++.+|+ +..++.+++++++++++++|+++++|++++. ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs------------~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~ 249 (719)
T TIGR00921 183 INYDIEREFGKDMGTTMAISGILVVLVLLLDFKR------------WWRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TT 249 (719)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HH
Confidence 88888887777765 4577777777777777765 3447889999999999999999999999997 68
Q ss_pred HHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 000767 698 EVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 776 (1294)
Q Consensus 698 ~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av 776 (1294)
.++|.+++|+|+||++|++++|+++ .++.+.++|+.++++++|+++++|++|+++||+++.++++|++|+||+++++|+
T Consensus 250 ~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv 329 (719)
T TIGR00921 250 LLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGL 329 (719)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 8899999999999999999999885 578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhccccccceeeehHHHHH
Q 000767 777 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFV 856 (1294)
Q Consensus 777 ~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~ 856 (1294)
+++++.++|++|+++.+..++.+..+.. .+.. .++.+.+.+++.+. +.+..+++. .++++++
T Consensus 330 ~~~~l~~l~~lPall~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~l~~~-~~~~~r~~~--~vl~v~l 391 (719)
T TIGR00921 330 ITAYLLTLLVLPALLQSIDIGREKVKKE------IIAI---------GGKSSEIEEELSKV-LSITVRHPV--PALVAAL 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccc------cccc---------cCcchHHHHHHHHH-HHHHHhCCc--HhHHHHH
Confidence 9999999999999998765543221110 0000 01223345555543 445555543 3555667
Q ss_pred HHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCC-CCEEEEEecCCCCchhhhhhccccccccCcchHHHH
Q 000767 857 AFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNE 935 (1294)
Q Consensus 857 ~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g-~pv~~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~ 935 (1294)
+++++++++..+++.+.|...++|+|++.++.++.++++|++. .|+++++++.+..+++.. +++ +++.+.
T Consensus 392 ll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~~l-~~l--------~~l~~~ 462 (719)
T TIGR00921 392 IITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPELV-RFM--------DELSRD 462 (719)
T ss_pred HHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHHHH-HHH--------HHHHHH
Confidence 7888899999999999999999999999999999999999866 688998886555544321 111 122222
Q ss_pred HHHhccCCCCccccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCC
Q 000767 936 ISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLL 1015 (1294)
Q Consensus 936 l~~~~~~~~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~ 1015 (1294)
+++ .+....+.++ ..+.|+.+.++... +
T Consensus 463 l~~---~~~v~~v~~~--~si~~~~~~~~~~~-------------~---------------------------------- 490 (719)
T TIGR00921 463 IKA---TGVAARVFGA--PSIIDLVKEVEGLP-------------A---------------------------------- 490 (719)
T ss_pred Hhh---ccccCcccCC--CCHHHHHHHhcCCC-------------C----------------------------------
Confidence 221 1111111111 12444433322100 0
Q ss_pred CCCCChhHHHhhHHHHHhcCCCccccCCCCCccccceeccCCCCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhh
Q 000767 1016 KDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVS 1095 (1294)
Q Consensus 1016 ~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~ 1095 (1294)
|+. ..+. ..|++. ...| +. + ++..+ ....... +..+..+..++..+..++..
T Consensus 491 ---~~~-~~~~-------~lp~~~-----~~~~---i~--~-~~~~v-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 542 (719)
T TIGR00921 491 ---PER-SALE-------PIPEDE-----EGGY---IS--G-GQIKV-----AVIQVQL-KQGEPKVQGRKILRDVQHEH 542 (719)
T ss_pred ---CCc-hHHH-------hCCHHH-----hcce---ec--C-CceEE-----EEEecCC-cchhHHHHHHHHHHHHhccC
Confidence 000 0000 011100 0001 00 0 00011 1111111 12222233333322222222
Q ss_pred cccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchH
Q 000767 1096 DSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAV 1175 (1294)
Q Consensus 1096 ~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~v 1175 (1294)
.+.|+++...|...++.+..+.+.++......++++++++++++.++|++.+++.++++.++++.++|+|+++|+++|+.
T Consensus 543 ~~~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~~~~l~~~i~~~~~~~~~~g~~~~~gi~l~~~ 622 (719)
T TIGR00921 543 PPPGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPSFLA 622 (719)
T ss_pred CCCCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 23467888889888888988889899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhheeecceeeeehhhhccC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 000767 1176 SVVNLVMAVGIAVEFCVHITHAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 1253 (1294)
Q Consensus 1176 slv~lvi~iGi~VD~~ihi~~~f~~~~--~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~ 1253 (1294)
+++.+.+++|++|||++|+.++|+++. ++.++|+++|++++|++|+.++ +|+++||++|+|++.++++.| +.+...
T Consensus 623 ~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~-lt~~~gf~~l~~s~~~~~~~~-g~~~~~ 700 (719)
T TIGR00921 623 MATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSG-LTTAGGFLSLLLSHFPIMRNF-GLVQGI 700 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhccCHHHHHH-HHHHHH
Confidence 999999999999999999999998765 3788999999999999999996 699999999999999999987 444556
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 000767 1254 LVLLGFLHGLVFLPVVLSV 1272 (1294)
Q Consensus 1254 ~v~~g~l~~LvlLPvlLs~ 1272 (1294)
.++++++++|+++|++|.+
T Consensus 701 ~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 701 GVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 6788999999999999863
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=100.00 E-value=4.1e-44 Score=466.36 Aligned_cols=737 Identities=14% Similarity=0.149 Sum_probs=472.5
Q ss_pred ccchHHHHHHHHHHHHHhhcccccee-ccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEecCCCCCCCCCCCCc
Q 000767 381 RNPTLVLSLSMALVLLLCLGLIRFEV-ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVT 459 (1294)
Q Consensus 381 r~P~~vl~i~llv~~~l~~Gl~~l~~-etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~~~~~~~~~~~il~ 459 (1294)
||||+++++|+++++++....+.+.. ..+....+.|+++++++..+.++++|++..+...++++... + + .++
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~~~~~~~vv~~~-----~-~-~~~ 73 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLES-----N-E-RLG 73 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCHHHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCCCCCeEEEEEeC-----C-C-CCC
Confidence 79999999999999888766655432 12334467899999999999999999876544444443321 1 1 345
Q ss_pred HHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCCCCCCCCCCcccccccccccCCCccccc
Q 000767 460 ESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMS 539 (1294)
Q Consensus 460 ~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~cl~ 539 (1294)
++..+.+.++.+++++.. . .+.++..+|+.
T Consensus 74 ~~~~~~~~~~~~~l~~~~----~-----------------~V~~v~~~~~~----------------------------- 103 (910)
T TIGR00833 74 DKDYATYDALIAKLRADI----M-----------------HVISVVDFWGP----------------------------- 103 (910)
T ss_pred HHHHHHHHHHHHHHhcCC----C-----------------CceecccCCCC-----------------------------
Confidence 555666666666665421 0 01112211110
Q ss_pred cCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhH
Q 000767 540 AFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 619 (1294)
Q Consensus 540 ~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~~~~~v~~~g~~s~ 619 (1294)
|.... +...+ +.++..+...++...+ .....+--+++.+.+++. ..+++++++++|+..+
T Consensus 104 ----p~~~~----~~~s~---d~~~~~i~V~~~~~~~-----~~~~~~~v~~v~~~i~~~----~~~~g~~v~vtG~~~~ 163 (910)
T TIGR00833 104 ----PEAAE----GLRSD---DGKATIIIVNLAGEKG-----QKEAQEAINAVRRIVEQT----NAPDGLTVHVTGPLAT 163 (910)
T ss_pred ----hhhHh----hccCC---CCCEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHhc----CCCCCeEEEEeChHHH
Confidence 00000 00001 1123334444432111 111111122333333332 1356899999999988
Q ss_pred HHHHHhhhccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhcccc----ch
Q 000767 620 EEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS----TL 694 (1294)
Q Consensus 620 ~~el~~~~~~d~~~-~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~----~~ 694 (1294)
..+..+....++.. ..++++++++.+++.+|+ +...+++++++++++++++|++.++|.+. +.
T Consensus 164 ~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS------------~~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~ 231 (910)
T TIGR00833 164 IADILESGDKDMNRITATTGIIVLIILLLVYRS------------PITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNA 231 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 88888877777654 467777777777777765 33477888999999999999999999864 33
Q ss_pred hhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 000767 695 IIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 773 (1294)
Q Consensus 695 i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa 773 (1294)
....+++.+++|+|+||.+|+++||+++ +++.++++++.++++++|++++++++|++++|+.+.++++|.+|.||+.++
T Consensus 232 ~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a 311 (910)
T TIGR00833 232 QTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCA 311 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 2334455788999999999999999986 578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhccccccceeeehHH
Q 000767 774 LAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVIS 853 (1294)
Q Consensus 774 ~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~ 853 (1294)
+|++++++..+|++||++.+..+|.... .+ ......+++++ .+.++.+++. .+++
T Consensus 312 ~gvl~a~l~~ltllPall~l~g~~~~~~---------~~-------------~~~~~~~~~~~-l~~~v~r~p~--~vl~ 366 (910)
T TIGR00833 312 VGVLVALLNAVTLTPALLTLEGREGLMK---------PG-------------RKSKIRFIWRR-LGTAVVRRPW--PILV 366 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCC---------Cc-------------ccchHhHHHHH-HHHHHHhccH--HHHH
Confidence 9999999999999999999988653110 00 00111222332 2455666653 3555
Q ss_pred HHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCC--CCEEEEEecC-CCCchhhhhhccccccccCcc
Q 000767 854 LFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKNY-NYSSESRQTNQLCSISQCDSN 930 (1294)
Q Consensus 854 ~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g--~pv~~Vv~~~-d~~~~~~~~~~ic~~~~c~~~ 930 (1294)
++++++++++++.++++.++|...++|+|++.++.++.++++|+.+ .|++++++.. +..+++.. +.+ +
T Consensus 367 v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~~l-~~l--------~ 437 (910)
T TIGR00833 367 TTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPALL-ADI--------D 437 (910)
T ss_pred HHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHHHH-HHH--------H
Confidence 6677888899999999999999999999999999999999999887 8899999853 54444211 110 1
Q ss_pred hHHHHHHHhccCCCCccc---cCCcc------------------------------------------------------
Q 000767 931 SLLNEISRASLIPQSSYI---AKPAA------------------------------------------------------ 953 (1294)
Q Consensus 931 sl~~~l~~~~~~~~~s~i---~~~~~------------------------------------------------------ 953 (1294)
++.+.+++ .++...+ ..|..
T Consensus 438 ~l~~~l~~---~~gV~~V~~~~~p~g~~~~~~~~~~q~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 514 (910)
T TIGR00833 438 RFEREIKA---VPGINMVQETQRPDGVVIKKTYLTFQAGNLGDQLDEFSDQLTSRQAYLLQDAEKIAEAIAGLRLVQAGM 514 (910)
T ss_pred HHHHHHhc---CCCcceeecCCCCCCCccchhhHHHHHhhHhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121211 1111100 00100
Q ss_pred --------------------------------chHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000767 954 --------------------------------SWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGV 1001 (1294)
Q Consensus 954 --------------------------------swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1294)
.|++-..+|.... .-|+.+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~----------------- 566 (910)
T TIGR00833 515 RLDGENLGQVSLAVRLMQQAISKLQGSAGDVFDIFDPLRRFVAAI-----------PECRANP----------------- 566 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------CCcccCh-----------------
Confidence 0111111111110 0111100
Q ss_pred ccCCCccc-----------------------------------------------c--cCCCCCCCC-------ChhHHH
Q 000767 1002 CKDCTTCF-----------------------------------------------H--HSDLLKDRP-------STIQFK 1025 (1294)
Q Consensus 1002 ~~~c~~c~-----------------------------------------------~--~~~~~~~~P-------~~~~f~ 1025 (1294)
.|..-- + -.....+.+ +..++.
T Consensus 567 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (910)
T TIGR00833 567 --VCSVAREIVQAADTVVSSAAKLADAAGQLARGIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYS 644 (910)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 000001100 011111
Q ss_pred hhHHHHHhcCCCcc--ccCC--CCCccccceeccCCCCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhc---cc
Q 000767 1026 EKLPWFLNALPSAS--CAKG--GHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSD---SL 1098 (1294)
Q Consensus 1026 ~~l~~fl~~~p~~~--c~~g--g~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~---~~ 1098 (1294)
+.+....++..+.. -|.. ....|..........+++ .+++..+.+....+.+-.+.+++.|+..++..+ ..
T Consensus 645 ~~~~~~~~~~~~~~f~~p~~~~~~~~f~~~~~~~~s~dg~--~~~~~v~~~~~p~~~~~~~~v~~lr~~~~~~~~~~~~~ 722 (910)
T TIGR00833 645 MTMGKLKGNAMGVDFYAPPRIFTDPNFKAVLDYFLSPDGH--AARLLVYGDGSPAGDQGAQEFNAIRTVAEEAIQRADLE 722 (910)
T ss_pred HHHHHhhhhcccCCcccChHHhCCHhHHHHHHHhcCCCCC--eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 11111100000000 0000 000111111000011121 234455444333344445666776666654322 23
Q ss_pred CceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccc-----cc
Q 000767 1099 QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQ-----LN 1173 (1294)
Q Consensus 1099 ~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~-----Ln 1173 (1294)
+.+++..|......|....+.++......++++++++++++++||++.+++.++++.+++...+|+++|.+.. ++
T Consensus 723 ~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~ 802 (910)
T TIGR00833 723 PAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRAPVAPIVLIGSVALSYLWALGLSVLAFQHILGAELH 802 (910)
T ss_pred CCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 5778888988888888888999999999999999999999999999999999999999999999999876543 44
Q ss_pred h-HHHHHHHhhhheeecceeeeehhhhccCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 000767 1174 A-VSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMY 1251 (1294)
Q Consensus 1174 ~-vslv~lvi~iGi~VD~~ihi~~~f~~~~~-~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~ 1251 (1294)
. +.++..++.+|+++||+||++.||+++.+ +.++++.+|++.+|++|+.++ +|+++||..|++++...++.+.+.+.
T Consensus 803 ~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~-~~~~~~f~~l~~s~~~~l~~~G~~~a 881 (910)
T TIGR00833 803 WSVLAGVFVLLVALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAG-LVFAGTMAALASAQLTAIAQFGFTVG 881 (910)
T ss_pred hhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 45566788899999999999999988753 456899999999999999997 69999999999999999998755555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCC
Q 000767 1252 LALVLLGFLHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1252 ~~~v~~g~l~~LvlLPvlLs~~gp~ 1276 (1294)
+++++-+++..++++|+++.++|..
T Consensus 882 ~gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 882 VGILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5544456777899999999999865
No 10
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=100.00 E-value=3.6e-41 Score=439.33 Aligned_cols=572 Identities=16% Similarity=0.178 Sum_probs=365.8
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHH-HHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 684 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~-~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl 684 (1294)
+++++++++|...+..+..+....|+.. ..++++++++.+++.+|++ ...+..++++++++++++|+
T Consensus 246 ~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~------------~~~l~~l~~i~~s~~~~~~~ 313 (862)
T TIGR03480 246 DHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSP------------RLVFAVLVTLIVGLILTAAF 313 (862)
T ss_pred CCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 4689999999998888887777777765 5777888888888888764 23677888999999999999
Q ss_pred HhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCch
Q 000767 685 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 763 (1294)
Q Consensus 685 ~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p 763 (1294)
+.++|.+++. ++.+.+.+++|+||||++|++++|+++ .++.+.++++.+++++.|++++++++|+++||+.+.++++|
T Consensus 314 ~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 314 ATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999997 788889999999999999999999875 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhcccc
Q 000767 764 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 843 (1294)
Q Consensus 764 ~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 843 (1294)
.+++||+++++|++++++..+|++|+++.+..++.+ ++ .....++.++ +.++.
T Consensus 393 ~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~-~~---------------------~~~~~~~~~~-----~~~~~ 445 (862)
T TIGR03480 393 GVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRR-RK---------------------PPGYATLAPL-----DAFLR 445 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cc---------------------CccchhHHHH-----HHHHH
Confidence 999999999999999999999999999998632211 00 0011122222 22334
Q ss_pred ccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEE-EEEecCCCCchhhhhhccc
Q 000767 844 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLY-FVVKNYNYSSESRQTNQLC 922 (1294)
Q Consensus 844 ~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv~-~Vv~~~d~~~~~~~~~~ic 922 (1294)
+++ ..+++++++++++++++..+++.++|+..++|+++...+.++.+.+....++... ++.++. +..
T Consensus 446 ~~~--~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~vl~~~~-----~~~----- 513 (862)
T TIGR03480 446 RHR--RPVLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAPSA-----PEA----- 513 (862)
T ss_pred hcc--HHHHHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEEecCCH-----HHH-----
Confidence 442 3355666778888999999999999999999999999999999988876554322 333221 100
Q ss_pred cccccCcchHHHHHHHhccCCCCcccc------CCc--cch--HHHHHHhhcccccccccccCCCCCCCCC-CCCCCCCC
Q 000767 923 SISQCDSNSLLNEISRASLIPQSSYIA------KPA--ASW--LDDFLVWISPEAFGCCRKFTNGSYCPPD-DQPPCCPS 991 (1294)
Q Consensus 923 ~~~~c~~~sl~~~l~~~~~~~~~s~i~------~~~--~sw--lddf~~~l~~~~~~cc~~~~~~~~~~~~-~~~~~~~~ 991 (1294)
..+.+.+++ .++..... .+. ..| ++++.+-+.+... .....+.. +.....-.
T Consensus 514 -------~~~~~~l~~---~~~V~~v~sl~~~v~~~q~~kl~~i~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~l 576 (862)
T TIGR03480 514 -------RALTERLEA---LPEVDQVVTLPDFVPDDQEAKLALIADLALVLGPTLN-------PGEADPAPSAEEVAAAL 576 (862)
T ss_pred -------HHHHHHHhC---CCCcceEeehhhcCCCCHHHHHHHHHHHHHHhCcccC-------CccCCCCCChHHHHHHH
Confidence 011111211 11111000 000 000 0111111111000 00000000 00000000
Q ss_pred CCC---C--CCCCCcccCCCccc----ccCCCCCCCCChh----HHHh----hHHH-------HHhcCCCccccCCCC-C
Q 000767 992 GQS---S--CGSAGVCKDCTTCF----HHSDLLKDRPSTI----QFKE----KLPW-------FLNALPSASCAKGGH-G 1046 (1294)
Q Consensus 992 ~~~---~--~~~~~~~~~c~~c~----~~~~~~~~~P~~~----~f~~----~l~~-------fl~~~p~~~c~~gg~-~ 1046 (1294)
++. . ........+|..-. ....+....+... .+.+ .++. .+...|-. .... .
T Consensus 577 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~---~~~lp~ 653 (862)
T TIGR03480 577 RRLAARLRAAAAKSQDPDAAAAGRLAASLDRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVT---LEDLPP 653 (862)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHccCCCCC---hhhCCH
Confidence 000 0 00000000000000 0000000000000 0110 0110 00000000 0000 0
Q ss_pred ccccceeccCCCCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHH
Q 000767 1047 AYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINL 1126 (1294)
Q Consensus 1047 ~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l 1126 (1294)
.+... +.. .++.. +...+.+ .+..+. +..+++.+++++. ....+|....+.+....+.++....+
T Consensus 654 ~~~~~--~~~-~~~~~---~l~v~~~--~~~~~~----~~l~~~~~~v~~~---~~~~tG~~~~~~~~~~~i~~~~~~~~ 718 (862)
T TIGR03480 654 DLRRR--WVA-KDGRA---RLEVFPK--EDLNDN----EALRRFVRAVRKV---APDATGAPVSILESGDTVVGAFLQAF 718 (862)
T ss_pred HHHHh--HcC-CCCCE---EEEEecC--CCcchH----HHHHHHHHHHHhh---CCCccChHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 11111 1122222 111111 1222333333221 11235666666677778888888899
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhccCCCHH
Q 000767 1127 AIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKN 1206 (1294)
Q Consensus 1127 ~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~~~~~~ 1206 (1294)
++++++|++++++.++|++.++++++|++++++.++|+|+++|++||..+++.+.+.+|++|||+||++++|+++.+..
T Consensus 719 ~~a~~~i~lll~~~frs~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~- 797 (862)
T TIGR03480 719 IYALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSG- 797 (862)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHHhccch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1207 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1270 (1294)
Q Consensus 1207 ~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlL 1270 (1294)
... ..++|++|++++ +||++||.+|+||+.+.++.+ +.+....++++++.+++++|+|+
T Consensus 798 -~~~--~~~~g~ai~~sa-ltt~~gf~~l~~s~~~~~~~~-G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 798 -NLL--QSSTARAVFFSA-LTTATAFGSLAVSSHPGTASM-GILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred -hHH--HhhhHHHHHHHH-HHHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 246899999997 699999999999999999887 45555567889999999999987
No 11
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.98 E-value=2e-28 Score=323.16 Aligned_cols=615 Identities=12% Similarity=0.116 Sum_probs=351.3
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++++++.+.++.+ +.+++..+.....++++++++++.+++.|+++| .+++..+++.++++.++++|
T Consensus 318 P~g~~~~~~~d~~--~~i~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r------------~~li~~~~iP~s~~~~~~~~ 383 (1044)
T TIGR00915 318 PQGMKYVYPYDTT--PFVSASIEEVVHTLIEAIVLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1044)
T ss_pred CCCCeEEEEEecc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 4677777665533 122333333345567788888777777777653 26778888999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh--cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCC--
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 761 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~--~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~-- 761 (1294)
.++|+++|. ++.+...+.+|+.|||++++++++++. .++.+..+|+.++.++++++++.|++|++++|+.+++.+
T Consensus 384 ~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~ttltti~~flPl~~~~G~ 462 (1044)
T TIGR00915 384 AAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1044)
T ss_pred HHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999997 677777788899999999999998874 458899999999999999999999999999999777653
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHH---HHhH
Q 000767 762 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 837 (1294)
Q Consensus 762 -~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 837 (1294)
-+.++.|++..+++++++++.+++++|+++.+..++...... ... ..+...++.++ +.+.
T Consensus 463 ~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~l~~~ 526 (1044)
T TIGR00915 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEH---------HEF-------KGGFFGWFNRMFDRSTHG 526 (1044)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---------ccc-------cchHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998876543210000 000 00000111111 1233
Q ss_pred hhccc---cccceeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCC--C
Q 000767 838 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIG--P 900 (1294)
Q Consensus 838 ya~~l---~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~~---~~~~i~~~~~~g--~ 900 (1294)
|.+++ +++ |..++++++++++++++....++.++-+. -.+|+++.+.+ ..+.+++++... +
T Consensus 527 y~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~ 604 (1044)
T TIGR00915 527 YENGVGKILKR--RGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKA 604 (1044)
T ss_pred HHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 44433 233 22344555566677777666676665332 35688876544 444566655422 2
Q ss_pred CEEEEEe--cCCCCchhhhhhccc-cc---cc-----cCcchHHHHHHHh-ccCCCCcc-------ccC-----Ccc---
Q 000767 901 PLYFVVK--NYNYSSESRQTNQLC-SI---SQ-----CDSNSLLNEISRA-SLIPQSSY-------IAK-----PAA--- 953 (1294)
Q Consensus 901 pv~~Vv~--~~d~~~~~~~~~~ic-~~---~~-----c~~~sl~~~l~~~-~~~~~~s~-------i~~-----~~~--- 953 (1294)
.+.-+.. +.+......+..++- .. .. -+.+++.+++.+. .+.|+... +.. +..
T Consensus 605 ~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~g~~~~i~i~l 684 (1044)
T TIGR00915 605 NVESVFTVNGFSFAGRGQNSGMAFIRLKDWEERTGKENSVFAIAGRATGHFSQIKDAMVIAFNPPAILELGNATGFDFFL 684 (1044)
T ss_pred CeeEEEEEecccCCCCCcceEEEEEEecCHHhCCCccCCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEEE
Confidence 2322221 211000000000000 00 00 0112333333322 11222110 000 000
Q ss_pred -----chHHH-------HHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccc-ccCCCCCCCCC
Q 000767 954 -----SWLDD-------FLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPS 1020 (1294)
Q Consensus 954 -----swldd-------f~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~ 1020 (1294)
.=++. ....+....+- + .-+.+.. ...+ +-..-. +.+....|. +
T Consensus 685 ~g~~G~d~~~L~~~a~~l~~~l~~~pg~--~-~v~~~~~--~~~~-----------------~~~i~~d~~k~~~~Gl-s 741 (1044)
T TIGR00915 685 QDRAGLGHEALMQARNQLLGLAAQNPAL--T-RVRPNGL--EDEP-----------------QFKLNIDDEKAQALGV-S 741 (1044)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHhcCCCe--E-Eeecccc--CCCc-----------------eEEEEECHHHHHHcCC-C
Confidence 00111 11111110000 0 0000000 0000 000000 000000011 1
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCccccc--------------------------eecc-------CCCCCeEE----
Q 000767 1021 TIQFKEKLPWFLNALPSASCAKGGHGAYTNS--------------------------VDLK-------GYENGIVQ---- 1063 (1294)
Q Consensus 1021 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~--------------------------v~~~-------~~~~~~I~---- 1063 (1294)
.++..+.+..-+...+-.....++. .|.-. +.+. ......|.
T Consensus 742 ~~~v~~~l~~~~~g~~~~~~~~~~~-~~~v~v~~~~~~~~~~~~l~~l~i~~~~g~~vpL~~va~v~~~~~~~~i~r~n~ 820 (1044)
T TIGR00915 742 IADINTTLSTAWGSSYVNDFIDRGR-VKRVYVQAEPDARMSPEDINKWYVRNASGEMVPFSAFATGRWEYGSPKLERYNG 820 (1044)
T ss_pred HHHHHHHHHHHhCCceeEEEEeCCE-EEEEEEEeChhHcCCHHHHhceEeECCCCCEEEhhheEEEEEccCccceeecCC
Confidence 2233333322221111000000000 00000 0000 00000000
Q ss_pred --EeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1064 --ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT 1141 (1294)
Q Consensus 1064 --as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~ 1141 (1294)
+........+. .+..++.+..+++.++++ .|+++...|. +++...........+++|++++++++.++|
T Consensus 821 ~~~i~v~~~~~~~---~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~li~lvl~~~F 891 (1044)
T TIGR00915 821 LPSMEILGSAAPG---VSTGEAMAAMEAIAQKLP--PGFGFSWTGM----SYEERLSGSQAPALYALSLLVVFLCLAALY 891 (1044)
T ss_pred ceEEEEEEEcCCC---CCHHHHHHHHHHHHHhCC--CCceEeeccH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 123334444444444442 3555433331 233344445666778899999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh---ccCCCHHHHHHHHHHHhhH
Q 000767 1142 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGA 1218 (1294)
Q Consensus 1142 ~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~---~~~~~~~~ai~~al~~~g~ 1218 (1294)
+|++.+++++++++++++|++..++++|.+||.++++++++++|+.||++|+++..+. .++.+.++|+.+|..++.+
T Consensus 892 ~S~~~pliI~~~iPlsl~G~~~~l~~~g~~l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlR 971 (1044)
T TIGR00915 892 ESWSIPVSVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLR 971 (1044)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999996544 3345889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhCCCCccchhhhcccCCCC
Q 000767 1219 SVFSGITLTKLVGVIVLCFSRTEVFVVYYFQM---YLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSV 1291 (1294)
Q Consensus 1219 ~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~---~~~~v~~g~l~~LvlLPvlLs~~gp~~~~~~~~~~~~~~~~ 1291 (1294)
||++++ +||++|++||+|+.+..-+.+ ..| .++.+++|++.+|+++|+++.++.+. .+..++++.|++
T Consensus 972 PIlmTt-ltti~gllPla~~~g~g~~~~-~plai~vigGL~~st~ltL~vvP~ly~~~~~~---~~~~~~~~~~~~ 1042 (1044)
T TIGR00915 972 PILMTS-LAFILGVVPLAISTGAGSGSQ-HAIGTGVFGGMVTATVLAIFFVPLFYVVVRRL---FKRKSTKKEPSV 1042 (1044)
T ss_pred hHHHHH-HHHHHHHHHHHHhcCCChHHh-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcccCCCCCCC
Confidence 999996 799999999999875433321 122 22335577888899999999998543 445666677765
No 12
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.98 E-value=2.3e-28 Score=322.66 Aligned_cols=603 Identities=13% Similarity=0.091 Sum_probs=346.9
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++++++.+.++.+ +.+++....-...++++++++++.++++|+++| .+++..+++.+++++++++|
T Consensus 312 P~g~~~~~~~d~~--~~i~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r------------~~li~~~~ip~s~~~~~~~l 377 (1025)
T PRK10614 312 PAAIDLQIAQDRS--PTIRASLEEVEQTLAISVALVILVVFLFLRSGR------------ATLIPAVAVPVSLIGTFAAM 377 (1025)
T ss_pred CCCcEEEEeecCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5678887776543 122222222233456777777777777777643 26778889999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCc--
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM-- 762 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~-- 762 (1294)
.++|+++|. ++.....+++|+.|||++++++++++. +++.++.+|+.++.++++.+++.|++|++++|+.+++.+-
T Consensus 378 ~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~~g~~ 456 (1025)
T PRK10614 378 YLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLP 456 (1025)
T ss_pred HHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 999999997 677777788999999999999888774 4678999999999999999999999999999998877654
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhc-
Q 000767 763 -PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT- 840 (1294)
Q Consensus 763 -p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~- 840 (1294)
..++.|++..++++++++++++|++|+++++..++...++. ... .+....+. .+.+.|.+
T Consensus 457 g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~---------~~~--------~~~~~~~~-~l~~~Y~~~ 518 (1025)
T PRK10614 457 GRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQ---------KRL--------RGFGRMLV-ALQQGYGRS 518 (1025)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc---------cch--------hhHHHHHH-HHHHHHHHH
Confidence 46999999999999999999999999999876543210000 000 00011111 12223333
Q ss_pred --cccccceeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhhhHHH---HHHhhccCCCCEEEEE
Q 000767 841 --ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGYFN---NISEHLRIGPPLYFVV 906 (1294)
Q Consensus 841 --~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~~~~~---~i~~~~~~g~pv~~Vv 906 (1294)
++++++ ..++++++++++++++...+++.++-+. ..+|+++.+.+..+ .+++.+...+.+.-+.
T Consensus 519 l~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~~v~ 596 (1025)
T PRK10614 519 LKWVLNHT--RWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVT 596 (1025)
T ss_pred HHHHHhch--HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 334443 3455566677778888777777665442 24477776654333 3344443333333222
Q ss_pred ec-CCCCchhhhhhccc--ccccc--CcchHHHHHHHh-ccCCCCccc---------cC-----Cc-----cchHHHH--
Q 000767 907 KN-YNYSSESRQTNQLC--SISQC--DSNSLLNEISRA-SLIPQSSYI---------AK-----PA-----ASWLDDF-- 959 (1294)
Q Consensus 907 ~~-~d~~~~~~~~~~ic--~~~~c--~~~sl~~~l~~~-~~~~~~s~i---------~~-----~~-----~swlddf-- 959 (1294)
.. .... +...+..+- ..... ...++.+++.+. .+.++.... .. |. ..=++..
T Consensus 597 ~~~g~~~-~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~~~~i~i~l~G~d~~~L~~ 675 (1025)
T PRK10614 597 GFTGGSR-VNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALRE 675 (1025)
T ss_pred EEecCCC-CceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCCCCCEEEEEECCCHHHHHH
Confidence 10 0000 000000000 00000 112334444332 112221110 00 00 0001111
Q ss_pred -----HHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccc-ccCCCCCCCCChhHHHhhHHHHHh
Q 000767 960 -----LVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPSTIQFKEKLPWFLN 1033 (1294)
Q Consensus 960 -----~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~~~~f~~~l~~fl~ 1033 (1294)
...+....+- . .-+.++. ...+ +-.--. +.+.-..|. +.++..+.+...+.
T Consensus 676 ~a~~i~~~L~~~pgv--~-~v~~~~~--~~~~-----------------el~i~id~~ka~~~Gl-s~~~v~~~l~~~~~ 732 (1025)
T PRK10614 676 WEPKIRKALAALPEL--A-DVNSDQQ--DKGA-----------------EMALTYDRDTMARLGI-DVQAANSLLNNAFG 732 (1025)
T ss_pred HHHHHHHHHhcCCCe--E-EeecCCC--CCCc-----------------eEEEEECHHHHHHcCC-CHHHHHHHHHHHhC
Confidence 1111110000 0 0000000 0000 000000 000000111 12333333433333
Q ss_pred cCCCccccCCCCCcccccee----------------ccCCCCCe-----------------EEEe---EEEEecccCCch
Q 000767 1034 ALPSASCAKGGHGAYTNSVD----------------LKGYENGI-----------------VQAS---SFRTYHTPLNRQ 1077 (1294)
Q Consensus 1034 ~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~~-----------------I~as---~f~~~~~~l~~~ 1077 (1294)
..+-.....|+ ..|+-.+. +...++.. |..- +..+..-.....
T Consensus 733 G~~~~~~~~~~-~~~~i~v~~~~~~~~~~~~L~~l~i~~~~G~~vpL~~vA~i~~~~~p~~I~r~n~~~~i~v~a~~~~g 811 (1025)
T PRK10614 733 QRQISTIYQPL-NQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTG 811 (1025)
T ss_pred CceeeEEecCC-eEEEEEEEeChhHcCCHHHHhceEEECCCCCEEEhhHeEEEEEcCCcccEEecCCeeEEEEEEEeCCC
Confidence 21111111111 01111000 00000000 0000 000000011111
Q ss_pred hHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 000767 1078 IDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 1157 (1294)
Q Consensus 1078 ~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~ 1157 (1294)
.+.-++.+..++..++++-+.|++....| .+++..+...+....+++++++|++++.++|+|++.+++++++++++
T Consensus 812 ~~~~~~~~~i~~~l~~~~lP~g~~~~~~G----~~~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~~pliI~~tIPla 887 (1025)
T PRK10614 812 KSLSDASAAIERAMTQLGVPSTVRGSFAG----TAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLPSA 887 (1025)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEEEecc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 12233444444444443222344332222 23444555667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh---cc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000767 1158 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVI 1233 (1294)
Q Consensus 1158 ~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~---~~-~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~ 1233 (1294)
++|++..|+++|.+||..+++++++.+||.|+++|.++..+. .+ +.+.++|+.+|.+.+.+||++++ +||++|++
T Consensus 888 l~G~~~~L~l~g~~l~~~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTt-lTti~Gll 966 (1025)
T PRK10614 888 GVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTT-LAALFGAL 966 (1025)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999985443 23 34789999999999999999996 79999999
Q ss_pred hhhccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1234 VLCFSRTEVFVVYYFQM---YLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1234 ~L~fs~~~~~~~f~f~~---~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
||+++.+..-+.+ .-| .++.+++|++.+|+++|+++.++.
T Consensus 967 Plal~~g~g~~~~-~pmAi~iigGL~~sT~ltL~vvP~lY~~~~ 1009 (1025)
T PRK10614 967 PLVLSGGDGAELR-QPLGITIVGGLVMSQLLTLYTTPVVYLFFD 1009 (1025)
T ss_pred HHHHhcCCCHHHh-CCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876544322 122 223345667888999999999984
No 13
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.97 E-value=6.1e-28 Score=318.10 Aligned_cols=603 Identities=12% Similarity=0.124 Sum_probs=346.1
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++++++.+.++.+ +.+.+..+.-...+++++++++++++++||++| .+++..+++.+|++++++++
T Consensus 321 P~g~~~~~~~d~~--~~i~~~i~~~~~~l~~~~~lv~~vl~lfl~~~r------------~~~i~~~~ip~s~~~~~~~l 386 (1040)
T PRK10503 321 PKSVKVTVLSDRT--TNIRASVDDTQFELMLAIALVVMIIYLFLRNIP------------ATIIPGVAVPLSLIGTFAVM 386 (1040)
T ss_pred CCCcEEEEEecCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH------------HHHHHHhhhHHHHHHHHHHH
Confidence 4677777655433 223332222334566777777777777777653 26778889999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCc--
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM-- 762 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~-- 762 (1294)
.++|+++|. ++.+...+++|+.|||++++++++++. .++.++.+++.++.++++.+++.+++|++++|+.+++++-
T Consensus 387 ~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~tltti~~f~Pl~~~~g~~ 465 (1040)
T PRK10503 387 VFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIV 465 (1040)
T ss_pred HHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 999999998 566777778899999999999998874 4677888999999999999999999999999998877654
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhcc
Q 000767 763 -PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATI 841 (1294)
Q Consensus 763 -p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~ 841 (1294)
..++.|++..++++++++++++|++|+++....++...++.+ .. .+..+..+.+ +++.|.++
T Consensus 466 G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~---------~~-------~~~~~~~~~~-l~~~y~~~ 528 (1040)
T PRK10503 466 GRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQN---------RF-------SRASERMFDR-VIAAYGRG 528 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc---------hH-------HHHHHHHHHH-HHHHHHHH
Confidence 679999999999999999999999999988655432100000 00 0000111222 22334443
Q ss_pred c---cccceeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCCCCEEEEE
Q 000767 842 L---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIGPPLYFVV 906 (1294)
Q Consensus 842 l---~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~~---~~~~i~~~~~~g~pv~~Vv 906 (1294)
+ +++ |..++++++++++++++....++.++-+. ..+|+++.+.+ ..+.+++.+...+.+.-+.
T Consensus 529 l~~~l~~--~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~ 606 (1040)
T PRK10503 529 LAKVLNH--PWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLT 606 (1040)
T ss_pred HHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 3 333 23455555666677777666676665332 35677766544 3445555554333332222
Q ss_pred e--cCCCCch--hhhhhcc--cccccc--CcchHHHHHHHh-ccCCCCccc-------------cC-Cc-----cchHHH
Q 000767 907 K--NYNYSSE--SRQTNQL--CSISQC--DSNSLLNEISRA-SLIPQSSYI-------------AK-PA-----ASWLDD 958 (1294)
Q Consensus 907 ~--~~d~~~~--~~~~~~i--c~~~~c--~~~sl~~~l~~~-~~~~~~s~i-------------~~-~~-----~swldd 958 (1294)
. +.+..++ ...+..+ -....- ...++.+++++. .+.|+.... .. +. ..-+++
T Consensus 607 ~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~~~~~~~~~~v~i~l~G~d~~~ 686 (1040)
T PRK10503 607 SFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLTIDTQVSRTQYQFTLQATSLDA 686 (1040)
T ss_pred EEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCccccccCCCCCCCeEEEEECCCHHH
Confidence 1 1100000 0000000 000000 113444444433 112221100 00 00 001222
Q ss_pred HHHhh-------cccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCc-ccccCCCCCCCCChhHHHhhHHH
Q 000767 959 FLVWI-------SPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT-CFHHSDLLKDRPSTIQFKEKLPW 1030 (1294)
Q Consensus 959 f~~~l-------~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-c~~~~~~~~~~P~~~~f~~~l~~ 1030 (1294)
..+|. ....+- . .-+..+. ...+ +-.- ..+.+....|. +.++..+.+..
T Consensus 687 L~~~a~~l~~~l~~~pgv--~-~v~~~~~--~~~~-----------------e~~v~id~~k~~~~Gl-s~~~v~~~l~~ 743 (1040)
T PRK10503 687 LSTWVPKLMEKLQQLPQL--S-DVSSDWQ--DKGL-----------------VAYVNVDRDSASRLGI-SMADVDNALYN 743 (1040)
T ss_pred HHHHHHHHHHHHhcCCCe--E-EEEcccc--CCCc-----------------eEEEEECHHHHHHcCC-CHHHHHHHHHH
Confidence 22222 110000 0 0000000 0000 0000 00000000011 12333333332
Q ss_pred HHhcCCCccccCCCCCccccc--------------------------eec------c-CCCCCeEE------EeEEEEec
Q 000767 1031 FLNALPSASCAKGGHGAYTNS--------------------------VDL------K-GYENGIVQ------ASSFRTYH 1071 (1294)
Q Consensus 1031 fl~~~p~~~c~~gg~~~y~~~--------------------------v~~------~-~~~~~~I~------as~f~~~~ 1071 (1294)
-+...+......++. .|.-. +.+ . +.....|. +.......
T Consensus 744 ~~~g~~~~~~~~~~~-~~~I~v~~~~~~~~~~~~L~~l~i~~~~G~~v~L~~vA~i~~~~~~~~I~r~n~~~~v~v~~~~ 822 (1040)
T PRK10503 744 AFGQRLISTIYTQAN-QYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISFNV 822 (1040)
T ss_pred HhCCceeeEEEECCE-EEEEEEEeChhHhCCHHHHccEEEECCCCCEEEhhheEEEEEcCCcccEEeeCCeEEEEEEEEe
Confidence 222211111111100 01000 000 0 00000010 00111111
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 000767 1072 TPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIIL 1151 (1294)
Q Consensus 1072 ~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~ 1151 (1294)
.+. .+..++.+.+++..++++-+.|+++...| ..++..+...++...++++++++++++..++.|++.+++++
T Consensus 823 ~~g---~~~~~~~~~i~~~~~~~~lP~g~~~~~~g----~~~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~~~pliI~ 895 (1040)
T PRK10503 823 PDG---YSLGDAVQAIMDTEKTLNLPADITTQFQG----STLAFQSALGSTVWLIVAAVVAMYIVLGVLYESFIHPITIL 895 (1040)
T ss_pred CCC---CCHHHHHHHHHHHHHhcCCCCCeEEEecc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 111 22334444444444443223355542222 12334455567777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh----ccCCCHHHHHHHHHHHhhHHHHHHHHHH
Q 000767 1152 LVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS----VSSGDKNQRMKEALGTMGASVFSGITLT 1227 (1294)
Q Consensus 1152 l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~----~~~~~~~~ai~~al~~~g~~V~~~~~lT 1227 (1294)
++++++++|++..|+++|++||.+|++++++++|+.||++|.++.... .++.++++|+.+|.+++.+||++++ +|
T Consensus 896 ~tIPls~~G~~~~l~l~g~~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTt-lt 974 (1040)
T PRK10503 896 STLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT-LA 974 (1040)
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHH-HH
Confidence 999999999999999999999999999999999999999999995432 3345889999999999999999996 79
Q ss_pred HHHHHHhhhccCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1228 KLVGVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1228 t~~G~~~L~fs~~~~~~~f--~f~~~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
|++|++||+++.+..-+.+ ....+++.+++|++.+|+++|+++.++.
T Consensus 975 ti~gllPlal~~G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~ 1023 (1040)
T PRK10503 975 ALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFD 1023 (1040)
T ss_pred HHHHHHHHHHhcCCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876543321 0122233456677888999999999983
No 14
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.97 E-value=7.7e-28 Score=316.49 Aligned_cols=610 Identities=14% Similarity=0.155 Sum_probs=343.4
Q ss_pred CCCeEEEEccchh--HHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 683 (1294)
Q Consensus 606 ~~~~~v~~~g~~s--~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~G 683 (1294)
++++++.+.++.+ +++.+++ -...+..+++++++.+++.|+++| .++.+.+++.++++++++
T Consensus 311 P~g~~~~~~~d~~~~i~~~~~~----~~~~l~~~~ilv~lvl~lfl~~~r------------~~l~~~~~IP~s~~~~~~ 374 (1017)
T PRK09579 311 PPNLKVSIAYDATLFIQASIDE----VVKTLGEAVLIVIVVVFLFLGALR------------SVLIPVVTIPLSMIGVLF 374 (1017)
T ss_pred CCCcEEEEEecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 4577777665543 3333332 223456666666666667777643 266777899999999999
Q ss_pred HHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCC-
Q 000767 684 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 761 (1294)
Q Consensus 684 l~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~- 761 (1294)
++.++|+++|. ++.+...+++|+.|||++++++++++. .++.++.+|+.++.++.++|+++|++|++++|+.+.+.+
T Consensus 375 ~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~g 453 (1017)
T PRK09579 375 FMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTG 453 (1017)
T ss_pred HHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999997 677777778999999999999998774 578899999999999999999999999999999776643
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccH---HHHHHHh
Q 000767 762 M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGL---LARYMKE 836 (1294)
Q Consensus 762 ~--p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~---l~~~~~~ 836 (1294)
. +.++.|++..++++++++++++|+.|+++++..++.+..+ . . ....+.. +.+++++
T Consensus 454 ~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~~~~~~~~-~----------~-------~~~~~~~~~~l~~~Y~~ 515 (1017)
T PRK09579 454 LTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRHEENPS-G----------L-------AHRLDRLFERLKQRYQR 515 (1017)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-h----------h-------hHHHHHHHHHHHHHHHH
Confidence 3 5689999999999999999999999999987654321000 0 0 0000111 2223333
Q ss_pred HhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCCCCEEE
Q 000767 837 VHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIGPPLYF 904 (1294)
Q Consensus 837 ~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~~---~~~~i~~~~~~g~pv~~ 904 (1294)
.... .+++ |.+++++++++++++.+....++.++-+. ..+|+++.+.+ ..+.+++.+...|.+.-
T Consensus 516 ~l~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~~ 592 (1017)
T PRK09579 516 ALHG-TLNT--RPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYS 592 (1017)
T ss_pred HHHH-HHcc--hHHHHHHHHHHHHHHHHHHHhCCcCcCCccCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 2222 2233 22344444555556666556666554332 36788876543 44555655543344332
Q ss_pred EEe--cCCCCchhhhhhccccc-c-ccCcchHHHHHHHh-ccCCCCcc-------c----cC-Cc------cchHHHHHH
Q 000767 905 VVK--NYNYSSESRQTNQLCSI-S-QCDSNSLLNEISRA-SLIPQSSY-------I----AK-PA------ASWLDDFLV 961 (1294)
Q Consensus 905 Vv~--~~d~~~~~~~~~~ic~~-~-~c~~~sl~~~l~~~-~~~~~~s~-------i----~~-~~------~swlddf~~ 961 (1294)
+.. +.+..+.....-.+-.. . .-..+++.+++.+. .+.|+... + .. |. ..=+++..+
T Consensus 593 ~~~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~ 672 (1017)
T PRK09579 593 SFQINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEGLPFQFVINTANDYESLLQ 672 (1017)
T ss_pred EEEEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCCCCEEEEEECCCCHHHHHH
Confidence 221 10100000000000000 0 00112333333332 11222110 0 00 00 000111111
Q ss_pred hhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccc-ccCCCCCCCCChhHHHhhHHHHHhcCCCccc
Q 000767 962 WISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPSTIQFKEKLPWFLNALPSASC 1040 (1294)
Q Consensus 962 ~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~~~~f~~~l~~fl~~~p~~~c 1040 (1294)
+.+... .--+. ..+.-.-.++.. ... .+-+--. +.+.-..|. +.++..+.+...+....-...
T Consensus 673 ~a~~l~-~~l~~-~~g~~~v~~~~~-----------~~~--~el~i~vd~~ka~~~Gl-s~~~i~~~l~~~~~G~~~~~~ 736 (1017)
T PRK09579 673 VAQRVK-QRAQE-SGKFAFLDIDLA-----------FDK--PEVVVDIDRAKAAQMGV-SMQDLGGTLATLLGEGEINRF 736 (1017)
T ss_pred HHHHHH-HHHHc-CCCcEEeecccc-----------CCC--ceEEEEECHHHHHHcCC-CHHHHHHHHHHHhCCceeeEE
Confidence 111000 00000 000000000000 000 0000000 000000010 123333333332222111001
Q ss_pred cCCCCCcccccee--------------------------------cc-CCCCCeEEE---eE-EEEecccCCchhHHHHH
Q 000767 1041 AKGGHGAYTNSVD--------------------------------LK-GYENGIVQA---SS-FRTYHTPLNRQIDYVNS 1083 (1294)
Q Consensus 1041 ~~gg~~~y~~~v~--------------------------------~~-~~~~~~I~a---s~-f~~~~~~l~~~~d~i~a 1083 (1294)
..++. .|.-.+. +. ......|.. .| ..++-.+. .+.-++
T Consensus 737 ~~~~~-~~~I~v~~~~~~r~~~~~L~~l~i~~~~G~~VpL~~va~i~~~~~p~~I~r~n~~r~i~v~~~~~---~~~~~~ 812 (1017)
T PRK09579 737 TIDGR-SYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQFQQLNSAIISGFPI---VSMGEA 812 (1017)
T ss_pred EeCCE-EEEEEEEcChhHhCCHHHHhceEeECCCCCEEEhhHcEEEEEcCCCceEEEeCCeeEEEEEeeCC---CCHHHH
Confidence 11110 1110000 00 000000100 00 00110111 122334
Q ss_pred HHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 000767 1084 MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1163 (1294)
Q Consensus 1084 l~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G 1163 (1294)
++..++..++ .-+.|+++...|. +++.....+.....++++++++++++.++|+|++.+++++++++++++|++.
T Consensus 813 ~~~i~~~~~~-~lP~g~~~~~~G~----~~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~~pliI~~~iPla~~G~~~ 887 (1017)
T PRK09579 813 IETVQQIARE-EAPEGFAFDYAGA----SRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALI 887 (1017)
T ss_pred HHHHHHHHHh-hCCCCcEEEeech----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 1124555433332 2443333478888899999999999999999999999999999999999999
Q ss_pred HHHHhccccchHHHHHHHhhhheeecceeeeehhh---hcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccC
Q 000767 1164 VMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1239 (1294)
Q Consensus 1164 ~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f---~~~-~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~ 1239 (1294)
.+++.|.+||.++++++++.+||.|+++|.++..+ +.+ +.+.++|+.+|.+++.+||++++ +||++|++||++..
T Consensus 888 ~L~i~~~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTt-lTti~gllPla~~~ 966 (1017)
T PRK09579 888 PLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTT-AAMVFGMVPLILAT 966 (1017)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhc
Confidence 99999999999999999999999999999888644 323 45889999999999999999996 79999999999987
Q ss_pred chhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhCCCCccc
Q 000767 1240 TEVFVVYYFQM---YLALVLLGFLHGLVFLPVVLSVFGPPSRCM 1280 (1294)
Q Consensus 1240 ~~~~~~f~f~~---~~~~v~~g~l~~LvlLPvlLs~~gp~~~~~ 1280 (1294)
+...+.+ .-| .++.++++++.+|+++|+++.++.++.+..
T Consensus 967 g~g~~~~-~plA~~iigGL~~st~ltL~~iP~ly~l~~~~~~~~ 1009 (1017)
T PRK09579 967 GAGAVSR-FDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDAAP 1009 (1017)
T ss_pred CCChHHh-CCceeeeehHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 6544422 112 223356778888999999999998665533
No 15
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.97 E-value=8.7e-28 Score=316.88 Aligned_cols=600 Identities=14% Similarity=0.131 Sum_probs=343.9
Q ss_pred CCCeEEEEccchh--HHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 683 (1294)
Q Consensus 606 ~~~~~v~~~g~~s--~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~G 683 (1294)
++++++.+.++.+ +++.++. -...++++++++++++++.|+++| .+++.++++.++++.+++
T Consensus 317 P~g~~~~~~~d~~~~i~~~i~~----~~~~l~~~~ilv~lvl~l~l~s~r------------~~liv~~~iP~s~~~~~~ 380 (1032)
T PRK09577 317 PPGVKYQIPYETSSFVRVSMNK----VVTTLIEAGVLVFLVMFLFMQNFR------------ATLIPTLVVPVALLGTFG 380 (1032)
T ss_pred CCCcEEEEEecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 4678877766544 2333332 233456777777777777777653 377888899999999999
Q ss_pred HHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh--cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCC
Q 000767 684 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 761 (1294)
Q Consensus 684 l~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~--~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~ 761 (1294)
+|.++|+++|. ++.+...+++|+.|||++++++++++. .++.++.+|+.++.++++++++.+++|++++|+.+++.+
T Consensus 381 ~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~tlt~~~~flPl~~~~ 459 (1032)
T PRK09577 381 VMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459 (1032)
T ss_pred HHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 688888899999999999999999885 368899999999999999999999999999999776653
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHH---HHH
Q 000767 762 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLAR---YMK 835 (1294)
Q Consensus 762 ---~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~---~~~ 835 (1294)
-..++.|++..+++++++++.++|+.|+++....++....+. .. +....++.+ .+.
T Consensus 460 g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~----------~~--------~~~~~~~~~~~~~l~ 521 (1032)
T PRK09577 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVDGDHH----------EK--------RGFFGWFNRFVARST 521 (1032)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----------cc--------chHHHHHHHHHHHHH
Confidence 345899999999999999999999999998876543210000 00 000001111 112
Q ss_pred hHhhcc---ccccceeeehHHHHHHHHHHHhhhhhccCCCCcc---------cccCCCCchhh---hHHHHHHhhccCCC
Q 000767 836 EVHATI---LSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ---------KIVLPRDSYLQ---GYFNNISEHLRIGP 900 (1294)
Q Consensus 836 ~~ya~~---l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~---------~~~lp~dS~~~---~~~~~i~~~~~~g~ 900 (1294)
+.|.++ +++++.+. +++.+++++++++..+.+..++-+ ...+|+++.+. +..+.+++++...+
T Consensus 522 ~~Y~~~L~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~ 599 (1032)
T PRK09577 522 QRYATRVGAILKRPLRW--LVVYGALTAAAALLFTRLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHE 599 (1032)
T ss_pred HHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCC
Confidence 233333 23332222 222233344444444555544322 23678887554 34555666664333
Q ss_pred CEEEEEe--cCCC-Cch-hhhhhccc--cccc-----cCcchHHHHHHHh-ccCCCCcc-c-----------cCCc----
Q 000767 901 PLYFVVK--NYNY-SSE-SRQTNQLC--SISQ-----CDSNSLLNEISRA-SLIPQSSY-I-----------AKPA---- 952 (1294)
Q Consensus 901 pv~~Vv~--~~d~-~~~-~~~~~~ic--~~~~-----c~~~sl~~~l~~~-~~~~~~s~-i-----------~~~~---- 952 (1294)
.+.-+.. +.+. ... ...+..+- .... -..+++.+++... +..|+... . ..+.
T Consensus 600 ~v~~~~~~~g~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~~~~~~~g~~~~i~i~i 679 (1032)
T PRK09577 600 PVAYTFALGGFNLYGEGPNGGMIFVTLKDWKERKAARDHVQAIVARINERFAGTPNTTVFAMNSPALPDLGSTSGFDFRL 679 (1032)
T ss_pred CceEEEEEeccCCCCCCcceEEEEEEecChhhccccccCHHHHHHHHHHHhccCCCceEEeeccccccCCCCCCcEEEEE
Confidence 3322221 1110 000 00000000 0000 0113344444332 11222210 0 0000
Q ss_pred -----------cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCc-ccccCCCCCCCCC
Q 000767 953 -----------ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT-CFHHSDLLKDRPS 1020 (1294)
Q Consensus 953 -----------~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-c~~~~~~~~~~P~ 1020 (1294)
..+-++....+.... ...+-........+ +-.. ..+.+....|. +
T Consensus 680 ~g~~~~d~~~l~~~a~~l~~~l~~~~-----g~~~v~~~~~~~~~-----------------~~~i~~d~~~a~~~Gl-s 736 (1032)
T PRK09577 680 QDRGGLGYAAFVAAREQLLAEGAKDP-----ALTDLMFAGTQDAP-----------------QLKLDIDRAKASALGV-S 736 (1032)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHhcCC-----CeEEeeccccCCCc-----------------eEEEEECHHHHHHcCC-C
Confidence 001112222221100 00000000000000 0000 00000000011 1
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCcccc--------------------------ceecc-------CCCCCeEE----
Q 000767 1021 TIQFKEKLPWFLNALPSASCAKGGHGAYTN--------------------------SVDLK-------GYENGIVQ---- 1063 (1294)
Q Consensus 1021 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~--------------------------~v~~~-------~~~~~~I~---- 1063 (1294)
.++..+.+...+...+-.....|+. .|.- .+.+. ......|.
T Consensus 737 ~~~i~~~l~~~~~g~~~~~~~~~~~-~~~i~v~~~~~~~~~~~~l~~~~i~~~~G~~vpL~~va~i~~~~~~~~I~r~n~ 815 (1032)
T PRK09577 737 MDEINTTLAVMFGSDYIGDFMHGSQ-VRRVIVQADGRHRLDPDDVKKLRVRNAQGEMVPLAAFATLHWTLGPPQLTRYNG 815 (1032)
T ss_pred HHHHHHHHHHHhcCCeeeEEecCCe-EEEEEEEeChhHhCCHHHHhhEEEECCCCCEEEhhHhEEEEEccCcceEEecCC
Confidence 2233333322222211111111110 0000 00000 00000000
Q ss_pred --EeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1064 --ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT 1141 (1294)
Q Consensus 1064 --as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~ 1141 (1294)
+........+. .+..++.+..+++.++++ .|+++...|. +++...........+++|+++|++++.++|
T Consensus 816 ~r~~~v~~~~~~~---~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~l~~~~~~ai~li~lvl~~~F 886 (1032)
T PRK09577 816 YPSFTINGSAAPG---HSSGEAMAAIERIAATLP--AGIGYAWSGQ----SFEERLSGAQAPMLFALSVLVVFLALAALY 886 (1032)
T ss_pred ceEEEEEEEeCCC---CChHHHHHHHHHHHHhCC--CCcEEEeccH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00011111111 123344455555544442 4666554442 123333344566678899999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh---ccCCCHHHHHHHHHHHhhH
Q 000767 1142 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGA 1218 (1294)
Q Consensus 1142 ~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~---~~~~~~~~ai~~al~~~g~ 1218 (1294)
+|++.+++++++++++++|++..++++|.+||..+++++++.+|+.|+++|+++.... .++.+.++|+.+|.+++.+
T Consensus 887 ~S~~~plii~~~iPl~l~G~~~~l~l~g~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~R 966 (1032)
T PRK09577 887 ESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLR 966 (1032)
T ss_pred HhHHhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999999999999999995443 3345889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1219 SVFSGITLTKLVGVIVLCFSRTEVFVVYYFQM---YLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1219 ~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~---~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
||++++ +||++|++||+++.+...+.+ ..| .++.+++|.+.+|+++|+++.++.+.+
T Consensus 967 PIlmTt-ltti~gllPla~~~g~g~~~~-~pla~~iigGL~~sT~lTL~vvP~ly~l~~~~~ 1026 (1032)
T PRK09577 967 PIVMTS-LAFGVGVLPLAFASGAASGAQ-IAIGTGVLGGVITATVLAVFLVPLFFVVVGRLF 1026 (1032)
T ss_pred hHHHHH-HHHHHHHHHHHHccCCChHHh-cCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999996 799999999999876654432 222 223356677888999999999986543
No 16
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.97 E-value=3.5e-27 Score=311.35 Aligned_cols=602 Identities=13% Similarity=0.092 Sum_probs=341.3
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++++++.+.++.+ +.+++..+.-...++++++++++++++.|+++| .+++.++++.+++++++|++
T Consensus 318 p~g~~~~~~~d~~--~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r------------~~li~~~~iP~si~~t~~~~ 383 (1037)
T PRK10555 318 PHGLEYKVAYETT--SFVKASIEDVVKTLLEAIALVFLVMYLFLQNFR------------ATLIPTIAVPVVLMGTFSVL 383 (1037)
T ss_pred CCCcEEEEeeccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH------------HHHHHHhhhHHHHHHHHHHH
Confidence 4578887776543 222222222334567888888888888888753 26788889999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh--cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccC-Cc
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-PM 762 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~--~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s-~~ 762 (1294)
+++|+++|. ++.+.+.+++|+.|||++|+++++++. .++.++.+|+.++.++.+++++.+++|++++|+.+++. ..
T Consensus 384 ~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~stltti~~flPl~~~~G~ 462 (1037)
T PRK10555 384 YAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGT 462 (1037)
T ss_pred HHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999998 688888889999999999999999885 35889999999999999999999999999999977665 33
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCc-cHHHH---HHHh
Q 000767 763 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKP-GLLAR---YMKE 836 (1294)
Q Consensus 763 --p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~-~~l~~---~~~~ 836 (1294)
..++.|++..++++++++++++|+.|+++.+..++...++.. .++.. .++.+ .+++
T Consensus 463 ~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 524 (1037)
T PRK10555 463 TGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLKKGEHH------------------GQKGFFGWFNRMFNRNAE 524 (1037)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc------------------cchhHHHHHHHHHHHHHH
Confidence 357999999999999999999999999998765542110000 00000 00111 1233
Q ss_pred Hhhccc---cccceeeehHHHHHHHHHHHhhhhhccCCCCcc---------cccCCCCchhhh---HHHHHHhhccC--C
Q 000767 837 VHATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ---------KIVLPRDSYLQG---YFNNISEHLRI--G 899 (1294)
Q Consensus 837 ~ya~~l---~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~---------~~~lp~dS~~~~---~~~~i~~~~~~--g 899 (1294)
.|.+.+ ++++ ..++++++++++++++..+.++.++-+ ...+|+++.+.+ ..+.+++++.. .
T Consensus 525 ~Y~~~L~~~l~~~--~~~l~~~~~~~~~~~~l~~~l~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~ 602 (1037)
T PRK10555 525 RYEKGVAKILHRS--LRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEK 602 (1037)
T ss_pred HHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhCCCCcCCcccCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 344433 2332 233344445555666655666655532 236788876554 44455555532 2
Q ss_pred CCEEEEEe--c-CCCC-chhhhhhcccccc---c-----cCcchHHHHHHHh-ccCCCCccc-c------C-----Cc--
Q 000767 900 PPLYFVVK--N-YNYS-SESRQTNQLCSIS---Q-----CDSNSLLNEISRA-SLIPQSSYI-A------K-----PA-- 952 (1294)
Q Consensus 900 ~pv~~Vv~--~-~d~~-~~~~~~~~ic~~~---~-----c~~~sl~~~l~~~-~~~~~~s~i-~------~-----~~-- 952 (1294)
+.+.-+.. + .... .+...+-.+ ... . -..+++.+++... .+.|+.... . . |.
T Consensus 603 ~~v~~~~~~~G~~~~~~~~~~~~~~v-~l~~~~~r~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~v~v 681 (1037)
T PRK10555 603 DNVMSVFATVGSGPGGNGQNVARMFI-RLKDWDERDSKTGTSFAIIERATKAFNKIKEARVIASSPPAISGLGSSAGFDM 681 (1037)
T ss_pred CCeEEEEEEeccCCCCCCCceEEEEE-EecCHHhCCCccCCHHHHHHHHHHHHhcCCCcEEEeeccccCCCCCCCCCEEE
Confidence 33222211 1 0000 000000000 000 0 0012333443322 112222110 0 0 00
Q ss_pred -------------cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccc-ccCCCCCCC
Q 000767 953 -------------ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDR 1018 (1294)
Q Consensus 953 -------------~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~ 1018 (1294)
..+-++..+.+....+ --....+.. ...+ +-+--. +.+....|.
T Consensus 682 ~l~g~~g~d~~~L~~~a~~l~~~l~~~~g-v~~v~~~~~----~~~~-----------------~l~i~id~~k~~~~Gl 739 (1037)
T PRK10555 682 ELQDHAGAGHDALMAARNQLLALAAKNPE-LTRVRHNGL----DDSP-----------------QLQIDIDQRKAQALGV 739 (1037)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCCC-eEEEecCCc----CCCc-----------------eEEEEECHHHHHHcCC
Confidence 0011111122211000 000000000 0000 000000 000000000
Q ss_pred CChhHHHhhHHHHHhcCCCccccC------------------------------CCCCccccce-ecc-CCCCCeEEE--
Q 000767 1019 PSTIQFKEKLPWFLNALPSASCAK------------------------------GGHGAYTNSV-DLK-GYENGIVQA-- 1064 (1294)
Q Consensus 1019 P~~~~f~~~l~~fl~~~p~~~c~~------------------------------gg~~~y~~~v-~~~-~~~~~~I~a-- 1064 (1294)
+.++..+.+..-+...+-..... +|..-+-.++ +.. ......|..
T Consensus 740 -s~~~v~~~l~~~~~G~~~~~~~~~~~~~~v~v~~~~~~r~~~~~l~~l~i~~~~G~~vpL~~vA~v~~~~~~~~i~r~n 818 (1037)
T PRK10555 740 -SIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYN 818 (1037)
T ss_pred -CHHHHHHHHHHHhcCceeeEEeeCCeEEEEEEEeChhHhCCHHHHhheEeeCCCCCEEEhhHcEEEEEcCCccceeecC
Confidence 11222222222111100000000 0100000000 000 000000000
Q ss_pred -e-EEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000767 1065 -S-SFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTC 1142 (1294)
Q Consensus 1065 -s-~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~ 1142 (1294)
. ....... .....+..++.+..+++.++++ .|+++...|. +++...........+++++++|+++++++|+
T Consensus 819 ~~~~v~v~~~-~~~g~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~lv~~il~~~f~ 891 (1037)
T PRK10555 819 GYSAVEIVGE-AAPGVSTGTAMDIMESLVKQLP--NGFGLEWTAM----SYQERLSGAQAPALYAISLLVVFLCLAALYE 891 (1037)
T ss_pred CceEEEEEEE-cCCCCCHHHHHHHHHHHHHhCC--CCcEEEecCh----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001100 1111223344555555554442 3555544442 2232233334556677888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh---ccCCCHHHHHHHHHHHhhHH
Q 000767 1143 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGAS 1219 (1294)
Q Consensus 1143 s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~---~~~~~~~~ai~~al~~~g~~ 1219 (1294)
|++.+++++++|+++++|++..|+++|.+||.++++++++++|+.||++|-++.... .++.+.++|+.+|.+++.+|
T Consensus 892 s~~~pliI~~~IPlal~G~l~~L~i~g~~l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRP 971 (1037)
T PRK10555 892 SWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRP 971 (1037)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999985433 33458899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1220 VFSGITLTKLVGVIVLCFSRTEVFVVYY--FQMYLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1220 V~~~~~lTt~~G~~~L~fs~~~~~~~f~--f~~~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
|++++ +||++|++||+++.+..-+.+. ....++.+++|++.+|+++|+++.++.
T Consensus 972 IlmTt-ltti~gllPlal~~g~g~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~ 1027 (1037)
T PRK10555 972 ILMTS-LAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLVR 1027 (1037)
T ss_pred HHHHH-HHHHHHHHHHHHhcCCChHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 7999999999999765433220 112223356778888999999999884
No 17
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.97 E-value=2.5e-27 Score=314.33 Aligned_cols=599 Identities=13% Similarity=0.101 Sum_probs=338.9
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++++++....+.+ +.+++..+.-...++++.++++++++++|+++| .+++..+++.+|++.++.+|
T Consensus 321 P~g~~~~~~~d~s--~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r------------~~liv~~~iP~s~~~~~~~m 386 (1051)
T TIGR00914 321 PEGVEIVTTYDRS--QLVDAAIATVKKNLLEGALLVIVILFLFLGNIR------------AALIAATVIPLSLLITFIGM 386 (1051)
T ss_pred CCCcEEEEecCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5678876665544 233333333334466677777777777777653 26778889999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cC-----C-----CCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-----E-----LPLETRISNALVEVGPSITLASLSEVLAF 754 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~-----~-----~~~~~ai~~al~~~g~si~~tslt~~~~F 754 (1294)
.++|+++|. ++.. .+++|+.|||+++++++.++. .+ + .++.+|+.++.+++++|++.|++|++++|
T Consensus 387 ~~~g~sln~-~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~stlTti~~f 463 (1051)
T TIGR00914 387 VFQGISANL-MSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQLIITLVF 463 (1051)
T ss_pred HHhCCcHHH-HHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 4433 567799999999999886542 11 3 56778999999999999999999999999
Q ss_pred HhhccCC-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHH
Q 000767 755 AVGSFIP-M--PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLA 831 (1294)
Q Consensus 755 ~~~~~s~-~--p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~ 831 (1294)
+.+++.+ . ..++.|++..+++++++++.++|+.|+++.+..++.+..+ + .+....+.
T Consensus 464 lPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~----------~----------~~~~~~~~ 523 (1051)
T TIGR00914 464 LPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEK----------E----------NRLMRVLK 523 (1051)
T ss_pred HHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc----------c----------ChHHHHHH
Confidence 9776543 3 4689999999999999999999999999987654211000 0 00011223
Q ss_pred HHHHhHhhccccccceeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCC
Q 000767 832 RYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIG 899 (1294)
Q Consensus 832 ~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~~---~~~~i~~~~~~g 899 (1294)
+++++.....+ ++ |+.+++++++++++++++..+++.++-+. ...|+++.+.+ ..+.+++.+..-
T Consensus 524 ~~Y~~~l~~~l-~~--~~~~i~~~~~ll~~~~~~~~~l~~~f~P~~d~~~~~v~~~~~~Gts~e~t~~~~~~vE~~l~~~ 600 (1051)
T TIGR00914 524 RRYEPLLERVL-AW--PAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLIKSF 600 (1051)
T ss_pred HHHHHHHHHHH-hh--hHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Confidence 33333322233 33 23456666677778888777777665442 13466665443 344566655432
Q ss_pred CCEEEEEe--cC-C----CCchhhhhhc--cccccc-----cCcchHHHHHHHh-ccCCCCcc-cc--------------
Q 000767 900 PPLYFVVK--NY-N----YSSESRQTNQ--LCSISQ-----CDSNSLLNEISRA-SLIPQSSY-IA-------------- 949 (1294)
Q Consensus 900 ~pv~~Vv~--~~-d----~~~~~~~~~~--ic~~~~-----c~~~sl~~~l~~~-~~~~~~s~-i~-------------- 949 (1294)
+.+.-+.. +. + ...+...+.. +-.... -+.+++.+++... .+.|+..+ +.
T Consensus 601 ~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~g~ 680 (1051)
T TIGR00914 601 PEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQPIQMRFNELISGV 680 (1051)
T ss_pred CCeEEEEEeecCCccCCCCCCCcceEEEEEEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccChhhhHHhhccCC
Confidence 32222111 10 0 0000000000 000000 0112233333322 11222110 00
Q ss_pred ---------CCcc----chHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccc-ccCCCC
Q 000767 950 ---------KPAA----SWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLL 1015 (1294)
Q Consensus 950 ---------~~~~----swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~ 1015 (1294)
.+.. .+-++..+.+....+ ..+-........+ +-.--. +.+...
T Consensus 681 ~~~i~i~l~G~d~~~L~~~a~~v~~~l~~~pg-----v~~v~~~~~~~~~-----------------e~~i~id~~~~~~ 738 (1051)
T TIGR00914 681 RSDVAVKVFGDDLDDLDATAEKISAVLKGVPG-----AADVKVEQTTGLP-----------------YLTVEIDREKAAR 738 (1051)
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCC-----ceeeeccccCCCc-----------------eEEEEECHHHHHH
Confidence 0000 011111111111000 0000000000000 000000 000000
Q ss_pred CCCCChhHHHhhHHHHHhcCCCccccCCCCCcccc-------------------------------ceec------c-CC
Q 000767 1016 KDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTN-------------------------------SVDL------K-GY 1057 (1294)
Q Consensus 1016 ~~~P~~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~-------------------------------~v~~------~-~~ 1057 (1294)
.|. +.++..+.+.......+......|+. .|.- .+.+ . +.
T Consensus 739 ~Gl-t~~~v~~~l~~~~~g~~~g~~~~~~~-~~~i~vr~~~~~~~~~~~l~~l~i~~~~~~~~~g~~v~L~~vA~v~~~~ 816 (1051)
T TIGR00914 739 YGL-TVGDVQDTVATAVGGRMSGETFEGDR-RFDIVIRLPESLRESPQALRQLPIPLPLSEDARKQFIPLSDVADLRVSP 816 (1051)
T ss_pred cCC-CHHHHHHHHHHHhCCceeeEEEECCE-EEeEEEEcChHHhcCHHHHhCcEeeCCCccCCCCcEEEhHHceEEEEec
Confidence 000 11222222222221111111000000 0000 0000 0 00
Q ss_pred CCCeE------EEeEEEEecccCCchhHHHHHHHHHHHHHHH-hhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHH
Q 000767 1058 ENGIV------QASSFRTYHTPLNRQIDYVNSMRAAREFSSR-VSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAI 1130 (1294)
Q Consensus 1058 ~~~~I------~as~f~~~~~~l~~~~d~i~al~~~r~ia~~-~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al 1130 (1294)
....| .+...... .. ..+..+..+++++..++ ..-+.|+++...| .+++......+....+++++
T Consensus 817 ~~~~i~r~ng~~~v~v~~~---~~-~~~~~~~~~~v~~~~~~~~~lP~g~~~~~~g----~~~~~~~~~~~l~~~~~~a~ 888 (1051)
T TIGR00914 817 GPNQISRENGKRRVVVSAN---VR-GRDLGSFVDDAKKAIAEQVKLPPGYWITWGG----QFEQLQSATKRLQIVVPVTL 888 (1051)
T ss_pred CcceEEecCCeEEEEEEEE---eC-CCCHHHHHHHHHHHHHhcCCCCCceEEEecc----hHHHHHHHHHHHHHHHHHHH
Confidence 00000 00011111 11 12233334444443332 1112344443222 23444555666777888999
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh---ccCCCHHH
Q 000767 1131 GAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQ 1207 (1294)
Q Consensus 1131 ~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~---~~~~~~~~ 1207 (1294)
++|+++++++|+|++.++++++++++++++++..|+++|.+||.++++++++++|+.||++||++.++. +++.++++
T Consensus 889 ~li~lvL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~ 968 (1051)
T TIGR00914 889 LLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDE 968 (1051)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996554 33458899
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1208 RMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1208 ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f--~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
|+.+|.+++.+||++++ +||++|++||+++.+...+.+ +..+.++.++++++.+|+++|+++.++..+.
T Consensus 969 Ai~~a~~~r~rpIl~tt-ltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~~~~~~~ 1039 (1051)
T TIGR00914 969 AVYEGALTRVRPVLMTA-LVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRR 1039 (1051)
T ss_pred HHHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999996 799999999999876543321 1122233467889999999999999997654
No 18
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.97 E-value=1.3e-26 Score=305.70 Aligned_cols=603 Identities=13% Similarity=0.092 Sum_probs=335.0
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++++++.+..+.+ +.++.........++++++++++++++.|+++| .+++..+++.++++.++++|
T Consensus 318 P~g~~i~~~~d~~--~~i~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r------------~~li~~~~iP~sl~~~~~~~ 383 (1049)
T PRK15127 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1049)
T ss_pred CCCceEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5678877765543 111222222233467788888888888887753 26778888999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh--cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCC--
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 761 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~--~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~-- 761 (1294)
.++|+++|. ++.+...+++|+.|||++++++++++. ..+.++.+|+.++.++++++++.+++|++++|+.+++.+
T Consensus 384 ~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~tltt~~~f~Pl~~~~G~ 462 (1049)
T PRK15127 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1049)
T ss_pred HHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999997 677777888999999999999999874 358899999999999999999999999999999877742
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHH---HHhH
Q 000767 762 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 837 (1294)
Q Consensus 762 -~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 837 (1294)
-..++.|++..+.+++++++.++|+.|++..+..++...... ++.. .+...++.++ +.+.
T Consensus 463 ~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~l~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~ 526 (1049)
T PRK15127 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDH--------GEGK--------KGFFGWFNRMFEKSTHH 526 (1049)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc--------ccch--------hhHHHHHHHHHHHHHHH
Confidence 245799999999999999999999999998876543211000 0000 0000111221 2333
Q ss_pred hhccc---cccceeeehHHHHHHHHHHHhhhhhccCCCCcc---------cccCCCCchhhh---HHHHHHhhccC--CC
Q 000767 838 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQ---------KIVLPRDSYLQG---YFNNISEHLRI--GP 900 (1294)
Q Consensus 838 ya~~l---~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~---------~~~lp~dS~~~~---~~~~i~~~~~~--g~ 900 (1294)
|.+++ ++++.+. +++++++++++++....++.++-+ .-.+|+++.+.+ ..+.+++++.. .+
T Consensus 527 Y~~~l~~~l~~~~~~--~~i~~~~~~~~~~l~~~~~~~f~P~~d~~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~~~~ 604 (1049)
T PRK15127 527 YTDSVGNILRSTGRY--LVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLTKEKN 604 (1049)
T ss_pred HHHHHHHHHccchHH--HHHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 44433 3332222 223334444555444556555522 236788876544 44456655532 12
Q ss_pred CEEEEEe--c-C-CCCchhhhhhccc--cccc-----cCcchHHHHHHHh-ccCCCCc--cc------------------
Q 000767 901 PLYFVVK--N-Y-NYSSESRQTNQLC--SISQ-----CDSNSLLNEISRA-SLIPQSS--YI------------------ 948 (1294)
Q Consensus 901 pv~~Vv~--~-~-d~~~~~~~~~~ic--~~~~-----c~~~sl~~~l~~~-~~~~~~s--~i------------------ 948 (1294)
.+.-+.. + . +...+...+..+- .... -..+++.+++... .+.++.. ..
T Consensus 605 ~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~v~i~v 684 (1049)
T PRK15127 605 NVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFEL 684 (1049)
T ss_pred CeeEEEEEeccCCCCCCCceEEEEEEecCHHhCcCcccCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEEE
Confidence 2211111 1 0 0000000000000 0000 0012222222221 1111111 00
Q ss_pred cCC---c----cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccc-ccCCCCCCCCC
Q 000767 949 AKP---A----ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF-HHSDLLKDRPS 1020 (1294)
Q Consensus 949 ~~~---~----~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~-~~~~~~~~~P~ 1020 (1294)
..+ . ..+-++..+.+....+. ..+ ........ . .+-..-. +.+....|. +
T Consensus 685 ~g~~~~d~~~L~~~a~~l~~~l~~~~g~----~~~--v~~~~~~~-----~----------~~i~i~vd~~~~~~~Gl-s 742 (1049)
T PRK15127 685 IDQAGLGHEKLTQARNQLLGEAAKHPDM----LVG--VRPNGLED-----T----------PQFKIDIDQEKAQALGV-S 742 (1049)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhCCCc----eee--eecCccCC-----C----------ceEEEEECHHHHHHcCC-C
Confidence 000 0 00111222222110000 000 00000000 0 0000000 000000011 1
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCcccccee----------------ccCCCCCe-----------------EE----
Q 000767 1021 TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVD----------------LKGYENGI-----------------VQ---- 1063 (1294)
Q Consensus 1021 ~~~f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~~-----------------I~---- 1063 (1294)
..+..+.+........-.....++. .|.-.+. ....++.. |.
T Consensus 743 ~~~v~~~l~~~~~G~~~~~~~~~~~-~~~v~v~~~~~~~~~~~~l~~l~i~~~~G~~V~L~~vA~v~~~~~~~~i~r~ng 821 (1049)
T PRK15127 743 ISDINTTLGAAWGGSYVNDFIDRGR-VKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNG 821 (1049)
T ss_pred HHHHHHHHHHHhCCceeeEEeeCCE-EEEEEEEEChhhcCCHHHHhhEEeECCCCCEEEhhHeEEEEEccCccceeeeCC
Confidence 2222232222111111000000000 0000000 00000000 00
Q ss_pred --EeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1064 --ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT 1141 (1294)
Q Consensus 1064 --as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~ 1141 (1294)
+........+ ..+..++.+..+++.++++ .|+++...|. +++...........+++++++|+++++++|
T Consensus 822 ~~~v~v~~~~~~---~~~~~~~~~~v~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~ai~lv~lvL~~~f 892 (1049)
T PRK15127 822 LPSMEILGQAAP---GKSTGEAMELMEELASKLP--TGVGYDWTGM----SYQERLSGNQAPALYAISLIVVFLCLAALY 892 (1049)
T ss_pred ceEEEEEEEeCC---CCCHHHHHHHHHHHHHhCC--CCcEEEeccH----HHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 0001111111 1223334444444444442 3555443332 122222223344566778889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhc----cCCCHHHHHHHHHHHhh
Q 000767 1142 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV----SSGDKNQRMKEALGTMG 1217 (1294)
Q Consensus 1142 ~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~----~~~~~~~ai~~al~~~g 1217 (1294)
+|++.+++++++++++++|++..|+++|.+||.++++++++++|+.||++|+++..+.+ ++.+..+|+.+|.+++.
T Consensus 893 ~s~~~pliI~~~IPls~~Ga~~~l~~~g~~l~~~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~ 972 (1049)
T PRK15127 893 ESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRL 972 (1049)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999955432 34588999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1218 ASVFSGITLTKLVGVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1218 ~~V~~~~~lTt~~G~~~L~fs~~~~~~~f--~f~~~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
+||++++ +||++|++||+++.+..-+.+ .....++.+++|++.+|+++|+++.++.
T Consensus 973 rPIlmTt-lTti~gllPl~l~~G~g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~~~ 1030 (1049)
T PRK15127 973 RPILMTS-LAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR 1030 (1049)
T ss_pred hhHHHHH-HHHHHHHHHHHhcCCCCHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 799999999999876544322 0122233456778888999999999884
No 19
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.97 E-value=1.4e-27 Score=307.31 Aligned_cols=600 Identities=16% Similarity=0.174 Sum_probs=362.7
Q ss_pred CCCeEEEEc--cchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFS--SESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 683 (1294)
Q Consensus 606 ~~~~~v~~~--g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~G 683 (1294)
|.++++... ....+.+.++ .-+..++.+.++.+++++++|+++|. ++++.+.+.+|++.+++
T Consensus 309 P~gv~~~~~~D~t~~V~~si~----~v~~tL~~a~~lVv~Vi~lFL~~~ra------------tlI~~iaiPlsLlgtf~ 372 (1009)
T COG0841 309 PQGVDIAIPYDTTEFIKASIE----EVIKTLFEAIVLVVLVMYLFLGNLRA------------TLIPALAVPVSLLGTFA 372 (1009)
T ss_pred CCCcEEEEecCCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhcce------------eEEeeeechHHHHHHHH
Confidence 556665544 4444444443 34456778888888888888888753 67788899999999999
Q ss_pred HHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh-ccCCc
Q 000767 684 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVG-SFIPM 762 (1294)
Q Consensus 684 l~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~-~~s~~ 762 (1294)
+|.++|+.+|. ++...-.|.+|+-|||+++++++..|..++.++.+|..+++++++.+++.++++.+++|+-. .+.++
T Consensus 373 ~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~~G~ 451 (1009)
T COG0841 373 VMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFMGGS 451 (1009)
T ss_pred HHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999998 67777778888888999999998877433999999999999999999999999999999955 45566
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhc
Q 000767 763 P--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT 840 (1294)
Q Consensus 763 p--~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~ 840 (1294)
. ..|+|++..+++++++++..+|+.|++-+...|+.+... ..+-+ ..+..+.+.+++++.+..
T Consensus 452 ~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~-~~~~~--------------~~~~~~~~~~~Y~~~l~~ 516 (1009)
T COG0841 452 TGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPK-GFFGW--------------FNRFFDRLEDRYQRGLRW 516 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-chhhh--------------hhhhhhHHHHHHHHHHHH
Confidence 5 489999999999999999999999999998776643211 00000 001122334444444444
Q ss_pred cccccceeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhh---hHHHHHHhhccC--CCCEEEEE
Q 000767 841 ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQ---GYFNNISEHLRI--GPPLYFVV 906 (1294)
Q Consensus 841 ~l~~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~---~~~~~i~~~~~~--g~pv~~Vv 906 (1294)
.+.| |+.++++++++++.+.++...++.++-+. ..+|+++.+. +..+.+++++.. .+.+.-+.
T Consensus 517 ~L~~---~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~~~~~~~~~v~~v~ 593 (1009)
T COG0841 517 VLRR---RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDWLLILEKPEVESVF 593 (1009)
T ss_pred HHhh---HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 4444 45677778888888899999998887553 3568886543 444556665321 23332222
Q ss_pred e--cCCC--Cchhhhhhccccc---cccCcchHHHHHHHh-ccCCCC----------cccc------------CC----c
Q 000767 907 K--NYNY--SSESRQTNQLCSI---SQCDSNSLLNEISRA-SLIPQS----------SYIA------------KP----A 952 (1294)
Q Consensus 907 ~--~~d~--~~~~~~~~~ic~~---~~c~~~sl~~~l~~~-~~~~~~----------s~i~------------~~----~ 952 (1294)
. +..- .+.......+-.. ...+.....+++.+. .+.++. .... .+ .
T Consensus 594 ~~~G~g~~~~~~~~~~~~Lk~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~d~~~l 673 (1009)
T COG0841 594 TVVGFGSGQNNAGRAFVSLKPWSERKENSAQAIIARLTKELAKIPDATVFAFTPPAVDGLGQGSGFPFQLRDRGGDLEAL 673 (1009)
T ss_pred EEeccCCCCCCcceEEEecCChhhcccccHHHHHHHHHHHhhcCCccceeccCCCccccCCCCCCccEEEEEeCCCHHHH
Confidence 2 1100 0000000000000 001111222222221 111110 0000 00 0
Q ss_pred cchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCc-ccccCCCCCCCCChhHHHhhHHHH
Q 000767 953 ASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTT-CFHHSDLLKDRPSTIQFKEKLPWF 1031 (1294)
Q Consensus 953 ~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-c~~~~~~~~~~P~~~~f~~~l~~f 1031 (1294)
..|.++....++..... .-+.++.++..+ -.. -.+.+.-..|.. .++..+.|...
T Consensus 674 ~~~a~~~~~~~~~~p~~----~v~~~~~~~~p~-------------------l~i~iDr~ka~~lGvs-~~~I~~tL~~~ 729 (1009)
T COG0841 674 RQAANQLLEKANQSPLL----NVRSDLLPDTPQ-------------------LQVDIDRDKAAALGVS-LQDIAQTLQSA 729 (1009)
T ss_pred HHHHHHHHHHHhhCCCc----cccCCCCCCCce-------------------EEEEeCHHHHHHcCCC-HHHHHHHHHHH
Confidence 12333333333321000 000000000000 000 000000001111 22333333333
Q ss_pred HhcCCCccccCCCCCcccccee----------------ccCCCCC-----------------eE------EEeEEEEecc
Q 000767 1032 LNALPSASCAKGGHGAYTNSVD----------------LKGYENG-----------------IV------QASSFRTYHT 1072 (1294)
Q Consensus 1032 l~~~p~~~c~~gg~~~y~~~v~----------------~~~~~~~-----------------~I------~as~f~~~~~ 1072 (1294)
+....-.....+|+ .|+.-+. ....+++ .| .+..+.....
T Consensus 730 ~~g~~v~~~~~~~~-~~~V~~~~~~~~R~~~~~l~~l~v~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~svti~~~~~ 808 (1009)
T COG0841 730 LGGTYVNDFRDDGR-VYKVVVQADAEFRSDPEDLGKLYVRSADGAMVPLSAFATIRWEYGPPRIVRYNGLPSVTISGNLA 808 (1009)
T ss_pred hCCCeeeeEecCCc-EEEEEEEcChhhcCCHHHHhceEEecCCCCEEechheEEEEEecCCCeEEeeCCceEEEEEEecC
Confidence 32211111111111 0110000 0000000 00 0111111122
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 000767 1073 PLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILL 1152 (1294)
Q Consensus 1073 ~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l 1152 (1294)
+-.+..+ ++++.++++.+...+.|+.....|. .+|+.+........+++++++|++++..+|.||+.++++++
T Consensus 809 ~g~s~g~---a~~~v~~~~~~~~lp~g~~~~~~G~----~~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS~~~P~~Il~ 881 (1009)
T COG0841 809 PGVSSGD---AMAAMEKLAAELPLPSGYTYEWSGE----SEQEKEAGGQALLLFALALLVVFLVLAAQYESFSIPFIVML 881 (1009)
T ss_pred CCCCHHH---HHHHHHHHHhccCCCCceEEEecch----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHh
Confidence 2234444 3444444444433233655544443 36777777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhh---hccCCCHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000767 1153 VLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVSSGDKNQRMKEALGTMGASVFSGITLTKL 1229 (1294)
Q Consensus 1153 ~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f---~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~ 1229 (1294)
++++.++|++..+.++|.++|+.+++++++.+||.+.++|-++... ++++.+++||+.+|...+.|||++++ +|++
T Consensus 882 tvPla~iGa~~~L~l~g~~~~i~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTt-la~i 960 (1009)
T COG0841 882 TVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTS-LAAI 960 (1009)
T ss_pred hhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999998433 23456899999999999999999996 7999
Q ss_pred HHHHhhhccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1230 VGVIVLCFSRTEVFVVYYFQM---YLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1230 ~G~~~L~fs~~~~~~~f~f~~---~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
+|++||+++.+..-+.- ..| +++-++++.+.+|+++|+++.++.
T Consensus 961 lG~iPLal~~g~Ga~~r-~~lgi~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 961 LGVLPLALSTGAGAESR-QPLGIAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred Hhhhhhhhccccccccc-CcceEEEechhHHHHHHHHhhhhhhheeee
Confidence 99999999987533311 111 123356778889999999999875
No 20
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.96 E-value=1.8e-27 Score=316.75 Aligned_cols=603 Identities=16% Similarity=0.195 Sum_probs=342.2
Q ss_pred CCCeEEEEccc--hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSE--SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 683 (1294)
Q Consensus 606 ~~~~~v~~~g~--~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~G 683 (1294)
++++++..... ..+++.++. -...++++.++.+++++++||++| .+++..+++.+|++.++.
T Consensus 311 p~~~~~~~~~d~s~~i~~~i~~----l~~~~~~g~~lv~~vl~lfl~~~r------------~~liv~~~IPisi~~t~~ 374 (1021)
T PF00873_consen 311 PEGLEITIVYDQSEYIEESINN----LISNLLIGIILVVLVLLLFLRNWR------------SALIVALSIPISILGTFI 374 (1021)
T ss_dssp STTEEEEEEEESHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSHH------------HHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEechHHHHHHHHH----HHHHHHHHhHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHHHHH
Confidence 45766655443 334444443 334567777777777777888764 277778899999999999
Q ss_pred HHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cC-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCC
Q 000767 684 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 761 (1294)
Q Consensus 684 l~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~-~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~ 761 (1294)
+|.++|+++|. ++..--.+.+|+-|||+++++++++|. .+ +.++.+++.++.+++++|++.+++|++++|+.+++.+
T Consensus 375 ~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~Pl~f~~ 453 (1021)
T PF00873_consen 375 FMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFLPLLFMP 453 (1021)
T ss_dssp HHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGSB
T ss_pred HHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999997 566666677788889999999988764 45 8999999999999999999999999999999777665
Q ss_pred -ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHh
Q 000767 762 -MP--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVH 838 (1294)
Q Consensus 762 -~p--~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y 838 (1294)
+. .++.|++..+++++++++.++|+.|++..+..|+.+..+...+ .+..+....++.+.|
T Consensus 454 G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~-----------------~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 454 GIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRF-----------------FSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCH-----------------HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccc-----------------cccccccccccccch
Confidence 33 5899999999999999999999999999887655433211000 000011122233444
Q ss_pred hccccccc-eeeehHHHHHHHHHHHhhhhhccCCCCccc---------ccCCCCchhhh---HHHHHHhhccCCCCEEEE
Q 000767 839 ATILSLWG-VKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIGPPLYFV 905 (1294)
Q Consensus 839 a~~l~~~~-~r~~vl~~f~~l~~~si~~~~~i~~gld~~---------~~lp~dS~~~~---~~~~i~~~~~~g~pv~~V 905 (1294)
.+++.+.. .|..++++++++++++++..++++.++-+. -.+|+++.+.+ ..+.+++.+...+.+.-+
T Consensus 517 ~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v 596 (1021)
T PF00873_consen 517 RRLLRWALRHPKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSV 596 (1021)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 44332211 123355566677777888888777655432 35688876554 445566667655555433
Q ss_pred Ee--cCCCCchhhhhhc--c-cccc--------ccCcchHHHHHHHhc-cCCCCccccCCccchHHHHHHhhcccccccc
Q 000767 906 VK--NYNYSSESRQTNQ--L-CSIS--------QCDSNSLLNEISRAS-LIPQSSYIAKPAASWLDDFLVWISPEAFGCC 971 (1294)
Q Consensus 906 v~--~~d~~~~~~~~~~--i-c~~~--------~c~~~sl~~~l~~~~-~~~~~s~i~~~~~swlddf~~~l~~~~~~cc 971 (1294)
.. +..........+. + -... .-...++.+++.+.- +.++.... + ..+..
T Consensus 597 ~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~------~-------~~~~~---- 659 (1021)
T PF00873_consen 597 SSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVF------V-------FSPPD---- 659 (1021)
T ss_dssp EEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEE------E-------EEHCS----
T ss_pred ceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCccee------c-------ccccc----
Confidence 33 2111000000000 0 0000 001122222222211 01110000 0 00000
Q ss_pred cccCCCCCCCCCCCCCCC--CCCCCCCCCCCcccCCCccc------c--cCCCCCCCC----------------ChhHHH
Q 000767 972 RKFTNGSYCPPDDQPPCC--PSGQSSCGSAGVCKDCTTCF------H--HSDLLKDRP----------------STIQFK 1025 (1294)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~c~~c~------~--~~~~~~~~P----------------~~~~f~ 1025 (1294)
.... ...++...+ .. +...+.-......++-..-+ . ..++..+.| +.++..
T Consensus 660 -~~~~-~~~~g~~~~-i~v~i~G~d~~~L~~~a~~v~~~l~~~pgv~dv~~~~~~~~~el~i~~dreka~~~Gls~~~va 736 (1021)
T PF00873_consen 660 -LRGL-GSGPGSSAP-IQVEIYGDDLEELRKAAEKVKAKLAEIPGVTDVRDDWEDGQPELRIDPDREKAARLGLSPADVA 736 (1021)
T ss_dssp -SCCC-CSSSSEEEE-EEEECSSSCHHHHHHHHHHHHHHHHHSTTEEEEEESSSSBEEEEEEEE-HHHHHHTTB-HHHHH
T ss_pred -cccc-cccccccee-eeeccCCCCHHHHHHHHHHHHHHHHhCCCcccccccccccCcceEEEecHHHHHHcCCCHHHHH
Confidence 0000 000000000 00 00000000000000000000 0 000001111 112233
Q ss_pred hhHHHHHhcCCCccccCCCCCccccceeccC---------------CCCC-eEE--------E---------------eE
Q 000767 1026 EKLPWFLNALPSASCAKGGHGAYTNSVDLKG---------------YENG-IVQ--------A---------------SS 1066 (1294)
Q Consensus 1026 ~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~---------------~~~~-~I~--------a---------------s~ 1066 (1294)
+.+...+....-.....|+. .|.-.+.... ..++ .+. . ..
T Consensus 737 ~~l~~a~~G~~v~~~~~~~~-~~~I~vr~~~~~r~~~~~L~~l~i~~~~G~~VpL~~la~i~~~~~~~~I~r~n~~r~it 815 (1021)
T PF00873_consen 737 RTLRTAFSGSVVGTFREGGE-EIDIRVRLPEEDRQSLEDLENLPIPTPDGRSVPLSQLATIEETQGPSQIRRENGQRTIT 815 (1021)
T ss_dssp HHHHHHHS-EEEEEEEETTE-EEEEEEEE-GGGSSSGGGGCT-EEEETTSEEEEGGGTEEEEEEEE-SEEEEETTCEEEE
T ss_pred HHHHHHhcccccceeeeCCe-EEEEEEecchhhccChhhhcceEEEeeccccccHHHHhccccccccceEecccCceeee
Confidence 33333332211111111111 0110000000 0001 010 0 00
Q ss_pred EEEecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Q 000767 1067 FRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWS 1146 (1294)
Q Consensus 1067 f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~ 1146 (1294)
......+-.+..+ ..+..++..+++.-+.|+.+...| .+++..+...+....+++|+++|++++.+.|+|++.
T Consensus 816 V~a~~~~~~~~~~---v~~~~~~~~~~~~lp~g~~~~~~G----~~~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~~ 888 (1021)
T PF00873_consen 816 VSADVAGGDSLGE---VSEAVKELLKELQLPPGYTIEFGG----EAEEMQESFSSLGFALILALLLIYLILAAQFESFRQ 888 (1021)
T ss_dssp EEEEESSSSHHHH---HHHHHHHHHTTT-SSTTEEEEEEC----HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSST
T ss_pred eccccccCccchh---HHHHHHhhhccccCCCCCcccCCc----hHHHHHhhhcchhhhHHHHHHHHHHHHHHHhcceee
Confidence 0111111111122 222333344433223344443222 235566677788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh---c-cCCCHHHHHHHHHHHhhHHHHH
Q 000767 1147 SAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---V-SSGDKNQRMKEALGTMGASVFS 1222 (1294)
Q Consensus 1147 ~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~---~-~~~~~~~ai~~al~~~g~~V~~ 1222 (1294)
++++++++++.++|++..++++|.+||..+++++++.+|++|.++|-++..+. . ++.+.++|+.+|..++.+||++
T Consensus 889 PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlm 968 (1021)
T PF00873_consen 889 PLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILM 968 (1021)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccchhhHHHHHHHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985543 3 3346889999999999999999
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhh
Q 000767 1223 GITLTKLVGVIVLCFSRTEVFVVYYFQMYLAL----VLLGFLHGLVFLPVVLSVF 1273 (1294)
Q Consensus 1223 ~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~----v~~g~l~~LvlLPvlLs~~ 1273 (1294)
++ +||++|++||+++.+..-+. ++-++.+ +++|++.+|+++|+++.++
T Consensus 969 Tt-lTti~G~lPla~~~g~g~~~--~~pla~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 969 TT-LTTILGMLPLALGIGEGAEF--WQPLAIVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp HH-HHHHHHHHHHHTT-STTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-hhhhccccccccccCCCccc--cCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 96 79999999999998765442 2333333 3455677799999999876
No 21
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.96 E-value=2e-27 Score=292.23 Aligned_cols=360 Identities=16% Similarity=0.253 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEE
Q 000767 364 VQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELIL 443 (1294)
Q Consensus 364 ~~~~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii 443 (1294)
..+++...+.+.+.+.+|||+.++++.++++++..+|..+++.++|..+ ++|+|+|++++.+.++++||+... +.+
T Consensus 364 ~~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~~---~~i 439 (727)
T COG1033 364 KKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSDP---ITI 439 (727)
T ss_pred cchhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCce---EEE
Confidence 3446677889999999999999999999999999999999999999887 699999999999999999998732 223
Q ss_pred EecCCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccC-CCCCCCCCCcc
Q 000767 444 ATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMD-PKNFDDFGGVE 522 (1294)
Q Consensus 444 ~~~~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~-~~~~~~~~~~~ 522 (1294)
..+ ..+..||+.++|+.++++++++.+. .+.+..++ +...-++.+.. |++.+
T Consensus 440 ~~~-------~~d~~dp~~l~~md~l~~~l~~~~~----~V~s~~si----------v~~vk~~~~~~~p~~~~------ 492 (727)
T COG1033 440 VLE-------AEDVRDPEVLRWMDELEEELEKGEE----HVFSASSI----------VDLVKQVNGGIIPDKSK------ 492 (727)
T ss_pred EEE-------CCCCCChHHHHHHHHHHHHHHhcce----eeeccchH----------HHHHHHHhcCCCCcchh------
Confidence 221 1235899999999999999998542 12222211 01111222211 11110
Q ss_pred cccccccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccc
Q 000767 523 HVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLP 602 (1294)
Q Consensus 523 ~l~~~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~ 602 (1294)
++...++. | ... ..+.+....-..+.+.+... .+..+.-.+++.+.+++.
T Consensus 493 -~~~i~~~~------------~---~~~----~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~--- 542 (727)
T COG1033 493 -IQIILEEL------------P---ESI----KKRYISGDQLNLLGYSLGDT-------QGELEDVGREILRDIEKE--- 542 (727)
T ss_pred -HHHHHHhc------------c---hhH----hhcccCCCceeeeecccccc-------hhHHHHHHHHHHHHHHhh---
Confidence 11111100 0 000 00111111111122222211 111112222333333332
Q ss_pred cccCCCeEEEEccchhHHHHHHhhhccchH-HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000767 603 MVQSKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 681 (1294)
Q Consensus 603 ~~~~~~~~v~~~g~~s~~~el~~~~~~d~~-~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s 681 (1294)
..+.+++++.+|+..+..++++....+.. ..+++++++++.+.+.+|+ +..++++++++..++.|+
T Consensus 543 -~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs------------~~~~i~~iipi~~~v~~~ 609 (727)
T COG1033 543 -NIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRS------------PLKAIIPLIPIAIVVGWN 609 (727)
T ss_pred -cCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc------------hHHhHHHHHHHHHHHHHH
Confidence 23567999999999999999998877654 4678888888888888776 345899999999999999
Q ss_pred HHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCC
Q 000767 682 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 761 (1294)
Q Consensus 682 ~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~ 761 (1294)
+|+|+++|+++++ ++..+-.+++|+|+||++|+.+||+++++...+++|+.+++.++|++++.+++|++.||+++.+|+
T Consensus 610 ~~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S~ 688 (727)
T COG1033 610 FGLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFSP 688 (727)
T ss_pred HHHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998 789999999999999999999999997543339999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000767 762 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 798 (1294)
Q Consensus 762 ~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~ 798 (1294)
+|.+++||+.++++++++++.+++++||++.+..+|.
T Consensus 689 f~i~snfGll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 689 FPIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 9999999999999999999999999999999876654
No 22
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.95 E-value=2.7e-27 Score=243.63 Aligned_cols=152 Identities=50% Similarity=0.838 Sum_probs=148.0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhh
Q 000767 659 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 738 (1294)
Q Consensus 659 ~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~ 738 (1294)
+++||+++++.+++++.+|+++++|++.++|++++++..+++||++++||+||+|+++++|++.++..+.++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988889999999999999999999999998888889999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccc
Q 000767 739 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLK 810 (1294)
Q Consensus 739 ~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~ 810 (1294)
+|++++.++++++++|++++++++|++|+||+++++++++++++++|+|||+|++|.||.+.+|.|++||+|
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~~~~~~~~~~~~ 152 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLLADRLDCFCCIR 152 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 23
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.94 E-value=7.3e-27 Score=283.86 Aligned_cols=168 Identities=22% Similarity=0.391 Sum_probs=157.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcc
Q 000767 629 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 708 (1294)
Q Consensus 629 ~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIG 708 (1294)
.|+.++.++|++||+|+++.|++++. ++||++||+.|++++++|+++++|+++++|++++.| .+++|||+|+||
T Consensus 60 ~Dv~iv~isy~vmflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaIG 133 (886)
T TIGR00920 60 SDVIVMTITRCIAVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLID 133 (886)
T ss_pred cceEEeeHHHHHHHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhhc
Confidence 47778899999999999999998764 899999999999999999999999999999999995 999999999999
Q ss_pred cCceEehhHHHH-HhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 709 VDNMCILVHAVK-RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 787 (1294)
Q Consensus 709 vD~~~~l~~~~~-~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~ 787 (1294)
+||+|++.+. + +..+..+.++||+++++++||+|++++++++++|++|++++||++|.||+|++++|+++|++|+|||
T Consensus 134 VDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF 212 (886)
T TIGR00920 134 LSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFF 212 (886)
T ss_pred hhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999655 5 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccCc
Q 000767 788 VALIVFDFLRAEDKRV 803 (1294)
Q Consensus 788 palL~l~~~r~~~~r~ 803 (1294)
||+|+|..+++..+|+
T Consensus 213 ~A~LsL~~~le~~~~h 228 (886)
T TIGR00920 213 PACLSLVLELSRSGRE 228 (886)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999998776665
No 24
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.93 E-value=2.8e-24 Score=277.82 Aligned_cols=352 Identities=13% Similarity=0.179 Sum_probs=251.9
Q ss_pred HHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEec
Q 000767 367 YMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 446 (1294)
Q Consensus 367 ~l~~~f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~ 446 (1294)
.++++++++++++.||||.++++++++++++.+|+.+++.+.|+.+ |+|+|+++++..+.++++||+.....++++.
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~-~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~-- 443 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEK-FIPQDLPSLQARKVIESHMGGSHDFATILVK-- 443 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhh-cCCCCcHHHHHHHHHHHHhCCCCcceEEEEE--
Confidence 3567789999999999999999999999999999999999999875 5899999999999999999865322344442
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCCCCCCCCCCcccccc
Q 000767 447 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 526 (1294)
Q Consensus 447 ~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~ 526 (1294)
++++.+++.++++.++++++++.+.. ....+ ..|+.+++........... ... +
T Consensus 444 -------~~~~~~~~~l~~l~~l~~~l~~~~~v--~~v~~--------------~~si~~~~~~~~~~~~~~~--~~~-~ 497 (719)
T TIGR00921 444 -------ADDVRDPELVRFMDELSRDIKATGVA--ARVFG--------------APSIIDLVKEVEGLPAPER--SAL-E 497 (719)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHhhcccc--CcccC--------------CCCHHHHHHHhcCCCCCCc--hHH-H
Confidence 12488999999999999998875321 11111 1122222221100000000 000 0
Q ss_pred cccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccC
Q 000767 527 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 606 (1294)
Q Consensus 527 ~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~ 606 (1294)
.+|. ...... +.+++ ..+.+...+... ++..+.. +++.+.+++ ...+
T Consensus 498 ----------~lp~---~~~~~~----i~~~~------~~v~~~~~~~~~--~~~~~~~----~~~~~~~~~----~~~~ 544 (719)
T TIGR00921 498 ----------PIPE---DEEGGY----ISGGQ------IKVAVIQVQLKQ--GEPKVQG----RKILRDVQH----EHPP 544 (719)
T ss_pred ----------hCCH---HHhcce----ecCCc------eEEEEEecCCcc--hhHHHHH----HHHHHHHhc----cCCC
Confidence 0000 000000 01111 112222221111 0111111 122222222 1235
Q ss_pred CCeEEEEccchhHHHHHHhhhccchH-HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 607 KNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 607 ~~~~v~~~g~~s~~~el~~~~~~d~~-~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
.++++..+|...+..++.+....+.. ...++++++++.+.+.+|+ +..++.+++++++++++++|+|
T Consensus 545 ~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs------------~~~~l~~~i~~~~~~~~~~g~~ 612 (719)
T TIGR00921 545 PGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRN------------PIKAVFPLIAIGSGILWAIGLM 612 (719)
T ss_pred CCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999998888888887777764 4567777777777777765 4558889999999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHH
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 765 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~v 765 (1294)
+++|++++. .+.++..+++|+|+||++|+++||+++.+..+.++|+.++++++|++++.+++|+++||+.++++++|.+
T Consensus 613 ~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~~~~~ 691 (719)
T TIGR00921 613 GLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIM 691 (719)
T ss_pred HHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 999999997 6778888999999999999999999875447899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 766 RVFSMFAALAVLLDFLLQITAFVALIVF 793 (1294)
Q Consensus 766 r~F~i~aa~av~~~~l~~lt~~palL~l 793 (1294)
|+||+.++++++++++..++++||+|.+
T Consensus 692 ~~~g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 692 RNFGLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999863
No 25
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.93 E-value=1e-22 Score=257.60 Aligned_cols=449 Identities=13% Similarity=0.179 Sum_probs=297.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccC
Q 000767 631 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 710 (1294)
Q Consensus 631 ~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD 710 (1294)
...++++++++++|+++.++. .++..++.++++++.++|+++++|.++|+ .+.....+++|++||
T Consensus 269 ~~a~~ial~lV~i~l~~~fr~--------------~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd 333 (755)
T PRK13024 269 IIAGIIGFALIFLFMLVYYGL--------------PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVD 333 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHh
Confidence 345678888888888877642 37788889999999999999999999997 677777888999999
Q ss_pred ceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 711 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 789 (1294)
Q Consensus 711 ~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~pa 789 (1294)
|.+++.++++++ +++.+.++++.++.++.+.+++.|++|++++|+.+.+.+.+++|.|++..++|++++++.++++.|+
T Consensus 334 ~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~ 413 (755)
T PRK13024 334 ANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRL 413 (755)
T ss_pred CcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 5678899999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHH----HhHhhccccccceeeehHHHHHHHHHHHhhh
Q 000767 790 LIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYM----KEVHATILSLWGVKIAVISLFVAFTLASIAL 865 (1294)
Q Consensus 790 lL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~ 865 (1294)
++.+..++. .++... ....... ..+++ +...-+|+.+++ ...++.++++++++.+
T Consensus 414 l~~~~~~~~-~~~~~~---~~~~kk~--------------~~~~~~~~~~~~~~df~~~rk---~~~~iS~ili~~~l~~ 472 (755)
T PRK13024 414 LLELLVKRG-DKKPFL---FGVKKKK--------------IHNINEGVTIFDRIDFVKKRK---WFLIFSIVLVIAGIII 472 (755)
T ss_pred HHHHhhccC-cccccc---cccchhh--------------hhccccccccCccchHHHHHH---HHHHHHHHHHHHHHHH
Confidence 999877654 222111 1110000 00000 000012232221 1233444455555554
Q ss_pred hhc--cCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhccccccccCcchHHHHHHHhccCC
Q 000767 866 CTR--IEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 943 (1294)
Q Consensus 866 ~~~--i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~ 943 (1294)
+.. ++.|.| |.+|..+.+-.++ + .+. .++.+.+...
T Consensus 473 ~~~~Gln~giD---------------------F~GG~~~~v~~~~-~-~~~---------------~~vr~~l~~~---- 510 (755)
T PRK13024 473 FFIFGLNLGID---------------------FTGGTRYEIRTDQ-P-VDL---------------EQVRADLKEL---- 510 (755)
T ss_pred HhhcCcccccc---------------------cCCcEEEEEEcCC-C-CCH---------------HHHHHHHHhc----
Confidence 422 222222 5556544433221 0 000 0111111100
Q ss_pred CCccccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhH
Q 000767 944 QSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQ 1023 (1294)
Q Consensus 944 ~~s~i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~ 1023 (1294)
.. .+ . ..+.
T Consensus 511 --------------------~~---------~~-------~-----------------------------------~v~~ 519 (755)
T PRK13024 511 --------------------GL---------GE-------V-----------------------------------NIVT 519 (755)
T ss_pred --------------------CC---------CC-------c-----------------------------------eEEE
Confidence 00 00 0 0000
Q ss_pred HHhhHHHHHhcCCCccccCCCCCccccceeccCCCCCeEEEeEEEEecccCCchhHHH-HHHHHHHHHHHHhhcccC---
Q 000767 1024 FKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYV-NSMRAAREFSSRVSDSLQ--- 1099 (1294)
Q Consensus 1024 f~~~l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i-~al~~~r~ia~~~~~~~~--- 1099 (1294)
+ |+ ++..+ +.++. ......++.. +..++ +.+.+.+..+
T Consensus 520 ~------------------~~-------------~~~~~---~i~~~-~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 561 (755)
T PRK13024 520 F------------------GS-------------DNNQV---LVRTY-GILSDDEEADTEIVAK---LKNALKNDKGGTI 561 (755)
T ss_pred e------------------cC-------------CCcEE---EEEEc-CCCCcchhhhHHHHHH---HHHHhhhhcccce
Confidence 0 00 00000 01110 0000001000 11111 1111111111
Q ss_pred ceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Q 000767 1100 MEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVN 1179 (1294)
Q Consensus 1100 ~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~ 1179 (1294)
.+...-|+ .--.++.+..+..+++|+++|++.+++-| .++.++..++++..-++.++|+|.++|+++|..++..
T Consensus 562 ~~~~~Vgp-----~~g~~~~~~~~~a~~~a~~~i~iyi~~rF-~~~~~~~aiial~~dvii~~g~~~l~~~~~~~~~iaa 635 (755)
T PRK13024 562 PSSETVGP-----TVGKELARNAIIAVLIALIGILLYILIRF-EWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAA 635 (755)
T ss_pred eEEEEECH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcHHHHHH
Confidence 11111122 12235567788888999999998888888 7888888888988899999999999999999999999
Q ss_pred HHhhhheeecceeeeehhhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 000767 1180 LVMAVGIAVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLAL 1254 (1294)
Q Consensus 1180 lvi~iGi~VD~~ihi~~~f~~~~-----~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~ 1254 (1294)
+++.+|.+||+++++..|++++. ++.++.+..|+.+++...+.+. +||++++++|.+.....++.|.+.|++ .
T Consensus 636 ll~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts-~tt~~~~~~L~~~g~~~i~~fa~~l~i-G 713 (755)
T PRK13024 636 ILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTS-LTTLLVLLALLIFGGSSLRNFSLALLV-G 713 (755)
T ss_pred HHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCchHHHHHHHHHH-H
Confidence 99999999999999999887752 3678999999999999999886 699999999999888888888655554 4
Q ss_pred HHHHHHHHHHHHHHHHhhhC
Q 000767 1255 VLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1255 v~~g~l~~LvlLPvlLs~~g 1274 (1294)
+++|...++++.+.++.+++
T Consensus 714 ii~g~~ssifia~~l~~~~~ 733 (755)
T PRK13024 714 LIVGTYSSIFIAAPLWLDLE 733 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888889888765555554
No 26
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.93 E-value=5.1e-22 Score=258.65 Aligned_cols=779 Identities=15% Similarity=0.166 Sum_probs=446.3
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHhhcccccee--ccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEecCCC
Q 000767 372 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEV--ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDT 449 (1294)
Q Consensus 372 f~~~g~~var~P~~vl~i~llv~~~l~~Gl~~l~~--etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~~~~ 449 (1294)
+.++|+|+.||||.++++++++++.+..-.+.+.. ..+.... .|+|.++....+...+.|....+-.-++++...
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l~~~~~~~~~~~-~p~~~~s~~a~~~~~~~f~~~~~~~~~ivv~~~-- 79 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTLEALGQDKSVAL-LPDDAPSLVAMKLIGQAFNESDSSSAAIVVLEA-- 79 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccccc-CCCCchHHHHHHHHhhhccCCCCCceEEEEEcC--
Confidence 34599999999999999999999998887776643 2333333 789999988888777777663333334444321
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCCCCCCCCCCccccccccc
Q 000767 450 THGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQ 529 (1294)
Q Consensus 450 ~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~~~~ 529 (1294)
+.-++++.-+...++.+.+++.+. +..++.|. |.. +.....
T Consensus 80 -----~~~l~~~d~~~~~~~v~~L~~~~~----~~~~~~d~-----------------~~~-~~~~~~------------ 120 (937)
T COG2409 80 -----DEGLTDADHALYDKLVDALRADTR----DVNVVQDF-----------------VSD-PLTAEL------------ 120 (937)
T ss_pred -----CCCCChhHHHHHHHHHHHHhhccc----ccceeccc-----------------CCC-cccccc------------
Confidence 123455555555566666666432 11122221 100 000000
Q ss_pred ccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccCCCe
Q 000767 530 HYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNL 609 (1294)
Q Consensus 530 ~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~~~~ 609 (1294)
..+. .+... +. . .......+ ..+..+. .+.. ++...+...++++
T Consensus 121 -~~s~------------d~~a~-------~~--~-~~~~~~~~--------~~~~~es-~~~v----~~~v~~~~~~~~~ 164 (937)
T COG2409 121 -AQSK------------DGKAA-------YA--Q-LTLAGYLG--------VTQANES-VEAV----RSIVRQLPAPDGL 164 (937)
T ss_pred -ccCc------------chhhh-------hc--c-eeeeeccC--------cchhHHH-HHHH----HHHhcccCCCCce
Confidence 0000 00000 00 0 00000000 0111111 1222 2222222246688
Q ss_pred EEEEccchhHHHHHHhhhccchHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 000767 610 TLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 688 (1294)
Q Consensus 610 ~v~~~g~~s~~~el~~~~~~d~~~~-~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~ 688 (1294)
+.+.+|.....+.+......+.... .++..++++++.+.+|+ +..++++++++.+++..+.|+..++
T Consensus 165 ~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s------------~i~a~lpL~t~~~s~~~a~~iv~~l 232 (937)
T COG2409 165 TAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRS------------VITAFLPLITVGLSLLVAQGIVALL 232 (937)
T ss_pred EEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887777777666666543 55555555555555554 4558899999999999999999865
Q ss_pred ccc----cchhhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCch
Q 000767 689 GVK----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 763 (1294)
Q Consensus 689 Gi~----~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p 763 (1294)
... ++.....+...+.+|+|+||++.++.||+++ +++.++++++.++++.+|..++.++.|.+++++.+.+.++|
T Consensus 233 ~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~~a~~~ 312 (937)
T COG2409 233 AYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLSFARLP 312 (937)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHHhcccc
Confidence 432 3333456666788999999999999999975 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhcccc
Q 000767 764 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 843 (1294)
Q Consensus 764 ~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 843 (1294)
.++.+++.++++|+++.+..+|+.||++++.+||..... + .. +.+...+.++ ..++.
T Consensus 313 ~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~---------~-~~--------~~~~~~w~~~-----~~~v~ 369 (937)
T COG2409 313 FLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPD---------P-KR--------ASESRFWRRV-----GTLVV 369 (937)
T ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCC---------c-ch--------hhhcchhhhh-----eeEEe
Confidence 999999999999999999999999999999998762210 0 00 0111222222 55677
Q ss_pred ccceeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCC--CCEEEEEec-CCCCchhhhhhc
Q 000767 844 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN-YNYSSESRQTNQ 920 (1294)
Q Consensus 844 ~~~~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g--~pv~~Vv~~-~d~~~~~~~~~~ 920 (1294)
++|..++ +..+++++......+.++.+.+.+..+|.+.+.++.++.++++|+.| .|.+++++. .+..++... -.
T Consensus 370 ~~P~~~l--~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~~~~-a~ 446 (937)
T COG2409 370 RRPLAIL--VASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTPAAL-AD 446 (937)
T ss_pred eccHHHH--HHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcChHHH-HH
Confidence 7765433 33345556666677899999999999999999999999999999876 688999985 332222110 00
Q ss_pred cccccccCcchHHHHHHHhccCCCCccccCCccchHHHH-HHhhcc--------ccccc-ccccCCCCCCCCCCCCCCCC
Q 000767 921 LCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDF-LVWISP--------EAFGC-CRKFTNGSYCPPDDQPPCCP 990 (1294)
Q Consensus 921 ic~~~~c~~~sl~~~l~~~~~~~~~s~i~~~~~swlddf-~~~l~~--------~~~~c-c~~~~~~~~~~~~~~~~~~~ 990 (1294)
+ +.+.+.+.+.........+.+|...-+++- ..+-.. ..... -+........+..... ...
T Consensus 447 i--------~~~~~~i~~v~gv~~v~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 517 (937)
T COG2409 447 I--------DKIAKAIAAVPGVRRVRAATRPNGKPLDDASISFQAGMLGDQLGQSAKFLADRLLDILSLGPADLST-SDG 517 (937)
T ss_pred H--------HHHHHHHHhccceeeeeeeeccCCcccccccccccchhhhhhhhccccccchHHHHHHhhchhHHHH-HHH
Confidence 0 011111111111000001111111101100 000000 00000 0000000000000000 000
Q ss_pred CCCC---CC-------CCCCcccCC---CcccccC--CCCC----------------CCCChhH----------HH----
Q 000767 991 SGQS---SC-------GSAGVCKDC---TTCFHHS--DLLK----------------DRPSTIQ----------FK---- 1025 (1294)
Q Consensus 991 ~~~~---~~-------~~~~~~~~c---~~c~~~~--~~~~----------------~~P~~~~----------f~---- 1025 (1294)
+++. .. ........- ..-..+. +..+ ..|.-.. +.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~d~~~~~~d~~~~v~~~i~~~~~~~~~~v~~s~r~~l~~~~~~~~lt~ 597 (937)
T COG2409 518 LERLRAELQQLLDGAHDMSGITVAVGGATALLRDSDADLTDFLPPVVSIIVGITFCLLIPVCRSFRSPLKALLTALQLTV 597 (937)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 0000 00 000000000 0000000 0000 0000000 00
Q ss_pred -------------hhHHHHHhcCCCc-ccc---------CCCCCccc--------------------c------------
Q 000767 1026 -------------EKLPWFLNALPSA-SCA---------KGGHGAYT--------------------N------------ 1050 (1294)
Q Consensus 1026 -------------~~l~~fl~~~p~~-~c~---------~gg~~~y~--------------------~------------ 1050 (1294)
..++.+++.+|+. ... .|....|. .
T Consensus 598 ~~~~g~~~~~~~~g~~~~~l~~~p~p~~~~~~~l~~~~~fg~~~~~~if~v~~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 677 (937)
T COG2409 598 QAATGALVVSALDGTLPQVLALLPGPLISTMPALRIAALFGLSTDYEIFLLSRQREELAAAMGQAFDTASTDDSFYLPPE 677 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccCccccCCHH
Confidence 0011222222300 000 00000111 0
Q ss_pred ceeccCC-------CCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhcc-c--CceeeecceeehhHHHHHHHHH
Q 000767 1051 SVDLKGY-------ENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDS-L--QMEIFPYSVFYMYFEQYLDIWR 1120 (1294)
Q Consensus 1051 ~v~~~~~-------~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~-~--~~~v~~~s~~~v~~eqy~~i~~ 1120 (1294)
.+....+ ....+.+.+|-.+|.......+.+....+....+++.... . +..++-.|..-.+.+-++...+
T Consensus 678 ~~~~~~~~~~~~~~~s~~i~~~~~~v~~~~~~~~~~~~~~~~~i~~~~da~i~~~~Lv~a~~~l~G~~a~~~d~~~~~~~ 757 (937)
T COG2409 678 AFANGDFQKGRKITASADGMAARFVVFHFGDPASTAAIGRILAIAVAADAAIKRTPLVPAKIYLGGTAAWWLDIRDWLTH 757 (937)
T ss_pred hcCChhhhHHHHHHhccCCceEEEEEEecCCcccHHHHHHHHHHHHHHHHhccCCcccCCEEEEechHHhhhhHHHHHHh
Confidence 0000000 0112455677776654444444455555544444443221 1 1233444554455555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH-----HHHhccccchH-HHHHHHhhhheeecceeee
Q 000767 1121 TALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGV-----MAILKIQLNAV-SVVNLVMAVGIAVEFCVHI 1194 (1294)
Q Consensus 1121 ~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~-----M~l~gi~Ln~v-slv~lvi~iGi~VD~~ihi 1194 (1294)
+........+..+|+++.+.+++...++.+..++.+.....+|+ ..++|.++... -.+..++.+.+++||.+.+
T Consensus 758 d~~~~~i~~~~~i~ii~~i~~rs~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~l 837 (937)
T COG2409 758 DLPLVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYNILL 837 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHHHHH
Confidence 77777777888999999999999999998888777776665543 55577666643 5567778889999999999
Q ss_pred ehhhhccC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000767 1195 THAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 1272 (1294)
Q Consensus 1195 ~~~f~~~~--~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~ 1272 (1294)
+.|++++- +.+.+ +..|.+++|..|...+ +.....+..|.+++....+.-.+...+++++-+++.-.++.|++..+
T Consensus 838 i~r~ree~~~g~~~~-ii~a~~~tg~Vit~ag-~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~~~l 915 (937)
T COG2409 838 ISRLREEIGAGLRTG-IIRAMRGTGGVITAAG-LIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAIAAL 915 (937)
T ss_pred HHHHHHHhccccchh-hhhhhccCCchHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888764 34455 9999999999998655 46677889999998877776666666777778888889999999999
Q ss_pred hCCCC
Q 000767 1273 FGPPS 1277 (1294)
Q Consensus 1273 ~gp~~ 1277 (1294)
+|...
T Consensus 916 ~~~~~ 920 (937)
T COG2409 916 LGRWN 920 (937)
T ss_pred hhhhc
Confidence 87543
No 27
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-22 Score=244.85 Aligned_cols=603 Identities=15% Similarity=0.184 Sum_probs=359.4
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
|+++++.-.=+++ .-+++...+-...++=+.+++.+.+.++|+++|+ +++.++++.+|++.++-+|
T Consensus 314 P~gVki~~~ydRs--~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~Rs------------Ali~~~~lPLS~li~f~~M 379 (1027)
T COG3696 314 PEGVKIVTTYDRS--ELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRS------------ALIVIISLPLSLLIAFIVM 379 (1027)
T ss_pred CCCcEEEEEeeHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 5677775444443 1223333333345566666666666777888653 7888899999999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHH-hc----CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hhcc
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQ----LELPLETRISNALVEVGPSITLASLSEVLAFA-VGSF 759 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~-~~----~~~~~~~ai~~al~~~g~si~~tslt~~~~F~-~~~~ 759 (1294)
..+|+..|+ ++.---.+.+|+=||.+++++++-.| .. .+..+-+.+.++.+++++|++++.+..++.|+ ++++
T Consensus 380 ~~~gi~~Nl-MSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~lII~vvf~PIFtL 458 (1027)
T COG3696 380 NFFGISANL-MSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIFTL 458 (1027)
T ss_pred HHcCCcchh-hcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhhhhheeehhhhhee
Confidence 999999996 54443355566667999999865544 32 23445567889999999999999999999999 6777
Q ss_pred CCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhH
Q 000767 760 IPMP--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEV 837 (1294)
Q Consensus 760 s~~p--~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 837 (1294)
+.+- .++-+++.-.++++.++++++|+.|++.++..|.. . +++++++.||+++.
T Consensus 459 ~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~----~--------------------~e~en~l~r~~~r~ 514 (1027)
T COG3696 459 TGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGI----L--------------------PESENPLMRFLIRV 514 (1027)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C--------------------cccccHHHHHHHHH
Confidence 7665 57888999999999999999999999999987641 1 24557899999999
Q ss_pred hhccccccc-eeeehHHHHHHHHHHHhhhhhccCCCCccc----------ccCCCCc--hhhhHHHHHHhhccCCCCEEE
Q 000767 838 HATILSLWG-VKIAVISLFVAFTLASIALCTRIEPGLEQK----------IVLPRDS--YLQGYFNNISEHLRIGPPLYF 904 (1294)
Q Consensus 838 ya~~l~~~~-~r~~vl~~f~~l~~~si~~~~~i~~gld~~----------~~lp~dS--~~~~~~~~i~~~~~~g~pv~~ 904 (1294)
|.|.+.+-. .+..+++++++.++++.+..+++..+|-+. ...|.-| ...+..+.+++....-|.+.-
T Consensus 515 Y~plL~~~l~~p~~vl~~A~~~~~~s~~l~~~lG~eF~P~l~Eg~l~~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~ 594 (1027)
T COG3696 515 YAPLLEFVLKLPKLVLLGAVLSLVASLVLLPKLGREFLPELNEGDLVYMPLTIPGVSLDEALRMLQAIERAIKKFPEVER 594 (1027)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcchhcCCCCCcCceeeeeccCCCCCHHHHHHHHHHHHHHHhcCcchhe
Confidence 999875422 123455556666777777666665443322 2333333 223344445554443343433
Q ss_pred EEe--c-CC-CCchhh-----------hhhccccccccCcchHHHHHHHhcc-CCCCcc-ccCCccchHHHHHHhhcccc
Q 000767 905 VVK--N-YN-YSSESR-----------QTNQLCSISQCDSNSLLNEISRASL-IPQSSY-IAKPAASWLDDFLVWISPEA 967 (1294)
Q Consensus 905 Vv~--~-~d-~~~~~~-----------~~~~ic~~~~c~~~sl~~~l~~~~~-~~~~s~-i~~~~~swlddf~~~l~~~~ 967 (1294)
|+. + .+ -+|+.. -|+++-. .. ..+++.+++++.-+ .|...+ ...|...-+|+.+.=...+.
T Consensus 595 V~~k~GrAe~~tD~~~~n~~et~I~Lkp~~eW~~-~~-t~~~lie~l~~~~~~lpG~~~~~tqPI~~R~delltGVrsdv 672 (1027)
T COG3696 595 VFGKTGRAETATDPAPLNMIETFIELKPQEEWKD-KK-TRDELIEELRKTLEQLPGLANSFTQPIRMRIDELLTGVRSDL 672 (1027)
T ss_pred eeeccccCCCCCCCCCcccceeeEEecchhhCCC-cc-cHHHHHHHHHHHHHhCCCcccccccchhHHHHHHHhccccce
Confidence 332 1 01 111100 0011100 00 23456677766533 555432 23333334555443222110
Q ss_pred cccccccCCC---------------CCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCC------CCCCChhHHHh
Q 000767 968 FGCCRKFTNG---------------SYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLL------KDRPSTIQFKE 1026 (1294)
Q Consensus 968 ~~cc~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~------~~~P~~~~f~~ 1026 (1294)
--+.+++. .-.|. ..+ ...++... ....+. +.+ .|. +.++..+
T Consensus 673 --aIKvfG~Dl~~L~~la~qI~~~lk~v~G-a~d--v~~E~~~g---------~~~l~I-~~dReaaaRyGl-~v~dv~~ 736 (1027)
T COG3696 673 --AIKVFGDDLAELNELAEQIEEVLKTVPG-AVD--VLAERQEG---------GPYLQI-DPDREAAARYGL-TVGDVQD 736 (1027)
T ss_pred --EEEEeCCCHHHHHHHHHHHHHHHhcCcc-hhh--heeeecCC---------ceeEEE-ecCHHHHHHhCC-CHHHHHH
Confidence 00000100 00000 000 00000000 000000 000 000 1122332
Q ss_pred hHHHHHhcCCCccccCCCC---------Ccccccee----------------cc-----CCCCC--eE---EEeEEEEec
Q 000767 1027 KLPWFLNALPSASCAKGGH---------GAYTNSVD----------------LK-----GYENG--IV---QASSFRTYH 1071 (1294)
Q Consensus 1027 ~l~~fl~~~p~~~c~~gg~---------~~y~~~v~----------------~~-----~~~~~--~I---~as~f~~~~ 1071 (1294)
.+..-+...+-..-.+|.. .+|.++++ +. .+.++ .| ...|.....
T Consensus 737 ~v~tAlgG~~v~~v~~g~~rf~vvvrlp~~~R~~~~~i~~L~i~~p~g~~ipL~~VA~I~~~~Gp~~i~rEn~~r~~vV~ 816 (1027)
T COG3696 737 VVKTALGGAVVGEVFEGIRRFPVVLRLPEDYRNSIEALRNLPIPTPNGQQIPLADVADIEVVTGPNQIKRENGKRRSVVY 816 (1027)
T ss_pred HHHHHhCCceeeeeeccceecceEEEcchhhccCHHHHhcccccCCCCCEeehhHheeeEeccCcchhccccCeeEEEEE
Confidence 2222222211111111110 01111110 00 00000 00 011111111
Q ss_pred ccCCchhHHHHHHHHHHH-HHHHhhcccCceeeecceeehhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 000767 1072 TPLNRQIDYVNSMRAARE-FSSRVSDSLQMEIFPYSVFYMYFEQYLDIW---RTALINLAIAIGAVFVVCLITTCSFWSS 1147 (1294)
Q Consensus 1072 ~~l~~~~d~i~al~~~r~-ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~---~~~~~~l~~al~~v~iv~~l~~~s~~~~ 1147 (1294)
-+.+ -.|.-...+++++ ++++++ .|.|+++-|..|+++.. +.....+.+++++||+++++.|+|+..+
T Consensus 817 ~nvr-gRDlgSfV~eaq~~i~~~V~-------LP~GY~i~~gGQFE~~qrA~~~L~vvvP~~lllIfvLl~~~f~sv~~a 888 (1027)
T COG3696 817 ANVR-GRDLGSFVEEAQKAIAEKVK-------LPPGYYIEWGGQFENLQRANKRLKVVVPVSLLLIFVLLYFAFKSVGEA 888 (1027)
T ss_pred Eccc-cCcHHHHHHHHHHHHHhhCC-------CCCceEEEecchhHHHHHHhhcceehHHHHHHHHHHHHHHHHccchHh
Confidence 1111 2344444455543 445544 34455555556665544 3444567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhc---cCCCHHHHHHHHHHHhhHHHHHHH
Q 000767 1148 AIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV---SSGDKNQRMKEALGTMGASVFSGI 1224 (1294)
Q Consensus 1148 lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~---~~~~~~~ai~~al~~~g~~V~~~~ 1224 (1294)
++++..+++.++|-+-.|++.|..++.-++++.+...|+++.+.+.++.++.. ++.+.+|++.+...++-+|+++++
T Consensus 889 lli~~~lP~Al~GGv~~l~l~G~~lSvas~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lMTa 968 (1027)
T COG3696 889 LLIFSNLPFALIGGVIALALRGFNLSVAAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLMTA 968 (1027)
T ss_pred HHHHhcCcHHHhhhHHHhhhcCceEeehhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999988876653 344788999999999999999997
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhCCC
Q 000767 1225 TLTKLVGVIVLCFSRTEVFVVYYFQMYLALV----LLGFLHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1225 ~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v----~~g~l~~LvlLPvlLs~~gp~ 1276 (1294)
++..+|++|++++++..-++. +-++..+ +.+.+.+|+++|+++.+++..
T Consensus 969 -~~~~lGlvPi~~~~g~GsEV~--~plA~vviGGl~tst~LtL~vlPaly~~~~~~ 1021 (1027)
T COG3696 969 -LVILLGLLPILWATGAGSEVM--RPLAIVVIGGLVTSTALTLLVLPALYALFGKR 1021 (1027)
T ss_pred -HHHHHhhhhhhhhcCCchHhh--ccchheeEcceeHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999998888774 5444443 456777899999999998754
No 28
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.91 E-value=1.4e-20 Score=236.59 Aligned_cols=445 Identities=16% Similarity=0.194 Sum_probs=281.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccC
Q 000767 631 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 710 (1294)
Q Consensus 631 ~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD 710 (1294)
...++++++++++++++.+|. .++...+.++++++.++|+|.++|.++|+ ++..--.+.+|++||
T Consensus 375 ~~aliig~ilV~l~m~lfyr~--------------~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD 439 (855)
T PRK14726 375 LVAGLIAAILVAALMIGFYGF--------------LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVD 439 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhC
Confidence 344567777777777666542 37788889999999999999999999997 555555677899999
Q ss_pred ceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 711 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 789 (1294)
Q Consensus 711 ~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~pa 789 (1294)
+.+++.++++++ +.+.+..+++..+.++++.+++.+++|++++|+.+.+.+-.++|.|++..++|++++++.++++.|+
T Consensus 440 ~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~ 519 (855)
T PRK14726 440 SNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRS 519 (855)
T ss_pred ceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999885 5678999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhh--h
Q 000767 790 LIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALC--T 867 (1294)
Q Consensus 790 lL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~--~ 867 (1294)
++.+..++.+.++.+. +.+..+..+..-+|+.+++. ..++.++++++|+.++ .
T Consensus 520 l~~~~l~~~~~~~l~~----------------------~~~~~~~~~~~~dfv~~rk~---~~~iS~ili~~si~~~~~~ 574 (855)
T PRK14726 520 LVAVWLRRRRPKHLPK----------------------GVRTGLFEGANIRFMGIRRY---VFTLSAALSLASLVLFATV 574 (855)
T ss_pred HHHHHhcccCccccch----------------------hhhhccccCCccchhhhHHH---HHHHHHHHHHHHHHHHHhc
Confidence 9997765432222110 00111111111223333221 2233334444444433 2
Q ss_pred ccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhccccccccCcchHHHHHHHhccCCCCcc
Q 000767 868 RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSY 947 (1294)
Q Consensus 868 ~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~ 947 (1294)
.++.|.| |.+|.-+.+-.+..+.. . . ++.+.+....
T Consensus 575 Gln~GID---------------------FtGGt~i~v~~~~~~~~-~----~-----------~vr~~l~~~~------- 610 (855)
T PRK14726 575 GLNLGID---------------------FTGGSLIEVRAKQGNAD-I----A-----------DIRARLNELN------- 610 (855)
T ss_pred CCcCceE---------------------ecCceEEEEEecCCCCC-H----H-----------HHHHHHHhcC-------
Confidence 2233322 34453333211111110 0 0 1111111000
Q ss_pred ccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhh
Q 000767 948 IAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEK 1027 (1294)
Q Consensus 948 i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~ 1027 (1294)
+ ++. ..+.+
T Consensus 611 ~-~~~-------------------------------------------------------------------~vq~~--- 619 (855)
T PRK14726 611 L-GEV-------------------------------------------------------------------QVERF--- 619 (855)
T ss_pred C-CCc-------------------------------------------------------------------eEEEe---
Confidence 0 000 00000
Q ss_pred HHHHHhcCCCccccCCCCCccccceeccCCCCCeEEEeEEEEeccc-C-CchhHHHHHHHHHHHHHHHhhcccCc-eeee
Q 000767 1028 LPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTP-L-NRQIDYVNSMRAAREFSSRVSDSLQM-EIFP 1104 (1294)
Q Consensus 1028 l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~-l-~~~~d~i~al~~~r~ia~~~~~~~~~-~v~~ 1104 (1294)
|+ ++ .+ ..++.... . ..+++..+.++ +.+.+..+. +...
T Consensus 620 ---------------~~-------------~~-~~---~ir~~~~~~~~~~~~~~~~~l~------~~l~~~~~~~~~~~ 661 (855)
T PRK14726 620 ---------------GS-------------PR-DA---LIRIASQDGGENAEQSAVTLVR------GELEDDYDFRRVEV 661 (855)
T ss_pred ---------------cC-------------Cc-eE---EEEEccCCccchhhHHHHHHHH------Hhhhcccccceeee
Confidence 00 00 00 00110000 0 00111111111 111111111 1111
Q ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhh
Q 000767 1105 YSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAV 1184 (1294)
Q Consensus 1105 ~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~i 1184 (1294)
-|+. +. .++.+..+..+++|+++|++-+++-| .|+.++..++++..=++.++|+|+++|+++|..++..+++.+
T Consensus 662 VGp~--vG---~el~~~ai~Al~iAli~IliYI~~RF-~~~fa~~avial~hDv~i~~g~~~l~g~~ls~~~iaglLtli 735 (855)
T PRK14726 662 VGPA--VS---GELTMAATLGVLAALAAILIYIWIRF-EWQFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIV 735 (855)
T ss_pred eCcc--HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 1211 11 34457777888888888777666655 567788888888888899999999999999999999999999
Q ss_pred heeecceeeeehhhhccC----C-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 000767 1185 GIAVEFCVHITHAFSVSS----G-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGF 1259 (1294)
Q Consensus 1185 Gi~VD~~ihi~~~f~~~~----~-~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~ 1259 (1294)
|++|+++|++..++++.. + +..+.+..++..+..-+++++ +||++|+++|++..+...+.|-+.++ +-+++|+
T Consensus 736 GysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~Ts-lTTll~llpL~l~G~~~i~~fai~li-~Gli~gt 813 (855)
T PRK14726 736 GYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTS-ATTLLALLALYLFGGEVIRSFTFAML-FGVAVGT 813 (855)
T ss_pred HHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHH
Confidence 999999999998887532 1 444566666666666688886 79999999999987777777644443 4467888
Q ss_pred HHHHHHHHHHHhhhCCC
Q 000767 1260 LHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1260 l~~LvlLPvlLs~~gp~ 1276 (1294)
+.++++.+.++.+++.+
T Consensus 814 ~sSifvAspll~~~~~~ 830 (855)
T PRK14726 814 FSSIYIAAPVLIVFKLR 830 (855)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88999888888777644
No 29
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.89 E-value=4.2e-21 Score=251.17 Aligned_cols=178 Identities=22% Similarity=0.231 Sum_probs=151.5
Q ss_pred CCeEEEEccchhHHHHHHhhhccchHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 607 KNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 607 ~~~~v~~~g~~s~~~el~~~~~~d~~~~-~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
++.+++++|...+..++.+..+.|...+ +++++++++++.+.+|+ +...+.+++++++++.+++|++
T Consensus 722 ~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS------------~~~pl~~l~~v~ls~~~s~G~~ 789 (910)
T TIGR00833 722 EPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRA------------PVAPIVLIGSVALSYLWALGLS 789 (910)
T ss_pred CCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999898764 56777777777777665 4557888999999999999999
Q ss_pred hhhccc-----cchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccC
Q 000767 686 SAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI 760 (1294)
Q Consensus 686 ~~~Gi~-----~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s 760 (1294)
.|++.+ ++..+..+++.+++|+|+||.+|+++||+++... ..++++.++++++|++|+.+++|++++|+.+.++
T Consensus 790 ~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~-g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~s 868 (910)
T TIGR00833 790 VLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPA-GNRTGIIRALGSTGGVITAAGLVFAGTMAALASA 868 (910)
T ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhc-CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 886543 3332344557788999999999999999997633 2468999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 000767 761 PMPACRVFSMFAALAVLLD-FLLQITAFVALIVFDFLR 797 (1294)
Q Consensus 761 ~~p~vr~F~i~aa~av~~~-~l~~lt~~palL~l~~~r 797 (1294)
++|.+++||+..++||+++ ++..++++||++.+.+|+
T Consensus 869 ~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 869 QLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999996 777789999999998765
No 30
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.88 E-value=4e-21 Score=225.56 Aligned_cols=193 Identities=22% Similarity=0.395 Sum_probs=164.0
Q ss_pred HHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhccchHHH-HHHHHHHHHHHHHHhCCCCCCcccccccchhhhh
Q 000767 590 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGL 668 (1294)
Q Consensus 590 ~~~~~~v~~~~~~~~~~~~~~v~~~g~~s~~~el~~~~~~d~~~~-~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l 668 (1294)
+++.+.+++.. ..++.+++++|...+..++.+....|...+ .++++++++.+.+.+|+ +..++
T Consensus 108 ~~i~~~i~~~~----~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs------------~~~~l 171 (333)
T PF03176_consen 108 KAIRDIIKEAE----KPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRS------------VRAAL 171 (333)
T ss_pred HHHHHHHHHhh----ccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHH------------HHHHH
Confidence 44444445432 467899999999999999999888887654 66777777777777765 45578
Q ss_pred HHHHHHHHHHHHHHHH----HhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHH
Q 000767 669 SGVVLVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSI 743 (1294)
Q Consensus 669 ~~i~~v~~sv~~s~Gl----~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si 743 (1294)
.+++++++++++++|+ +.++|.+++.+...++..+++|+|+||.+|+++||+++ .++.+.++++.++++++|+++
T Consensus 172 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i 251 (333)
T PF03176_consen 172 LPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAI 251 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchh
Confidence 8999999999999999 45567788764445556688999999999999999986 467889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000767 744 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 798 (1294)
Q Consensus 744 ~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~ 798 (1294)
+++++|+++||+.+.++++|++|+||+.+++|+++++++.+|++||++.+.+++.
T Consensus 252 ~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 252 LLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999999999999999999999999999999999999999999999999988764
No 31
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.87 E-value=2.1e-18 Score=214.82 Aligned_cols=445 Identities=13% Similarity=0.158 Sum_probs=282.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccC
Q 000767 631 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 710 (1294)
Q Consensus 631 ~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD 710 (1294)
....+++++++++|+.+.++. .|+..++.+++.++.++|++.++|.++|+ ....--.+++|++||
T Consensus 281 ~~A~ii~~~lV~lfm~~~Y~~--------------~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD 345 (758)
T PRK13023 281 VLAALLAALVVGLFMVLSYGI--------------LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVD 345 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhcc
Confidence 334567778888887776543 37778889999999999999999999997 677777788999999
Q ss_pred ceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 711 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 789 (1294)
Q Consensus 711 ~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~pa 789 (1294)
+.+++.++++++ +++.+.++++.++.++++.+++.+++|++++|+.+.+...+++|.|++...+|++++++.++++.|+
T Consensus 346 ~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~ 425 (758)
T PRK13023 346 AHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRL 425 (758)
T ss_pred CcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 5678999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhccccccceeeehHHHHHHHHHHHhhhhh--
Q 000767 790 LIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCT-- 867 (1294)
Q Consensus 790 lL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~l~~~si~~~~-- 867 (1294)
++.+..++.+.++.. . ..+..+.++..-+|+.+|+ ...++.++++++++.++.
T Consensus 426 l~~~~~~~~~~~~~~--------~--------------~~~~~~~~~~~~dF~~~r~---~~~~iS~il~~~~~~~~~~~ 480 (758)
T PRK13023 426 LIAQWVRTAKPKEVP--------K--------------RRLKLVPTVTHIPFMRLQF---VTLGISVLACAIVVALFVNI 480 (758)
T ss_pred HHHHHHhhcCccccc--------h--------------hhhhhcccCCCcchhhHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 999877653222110 0 0000000001122332221 122333334444444332
Q ss_pred ccCCCCcccccCCCCchhhhHHHHHHhhccCCCCEEEEEecCCCCchhhhhhccccccccCcchHHHHHHHhccCCCCcc
Q 000767 868 RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSY 947 (1294)
Q Consensus 868 ~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~pv~~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~l~~~~~~~~~s~ 947 (1294)
.++.|. .|.+|.-+.+-.+..+.. . .++.+.++..
T Consensus 481 Gln~GI---------------------DFtGGt~i~v~~~~~~~~-~---------------~~vr~~l~~~-------- 515 (758)
T PRK13023 481 GFNYGI---------------------DFRGGSMVELQARNGDAN-L---------------EDINERLAEL-------- 515 (758)
T ss_pred CCCCCe---------------------EecCceEEEEEecCCCCC-H---------------HHHHHHHHhc--------
Confidence 122221 134453333222111100 0 0111111100
Q ss_pred ccCCccchHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhh
Q 000767 948 IAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEK 1027 (1294)
Q Consensus 948 i~~~~~swlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~f~~~ 1027 (1294)
+- . +. ..+.+
T Consensus 516 ----------------~~---------~--------~~----------------------------------~vq~~--- 525 (758)
T PRK13023 516 ----------------NI---------D--------SA----------------------------------RVLPA--- 525 (758)
T ss_pred ----------------CC---------C--------Cc----------------------------------eEEEe---
Confidence 00 0 00 00000
Q ss_pred HHHHHhcCCCccccCCCCCccccceeccCCCCCeEEEeEEEEecccCCchhHHHHHHHHHHHHHHHhhcccCc-eeeecc
Q 000767 1028 LPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-EIFPYS 1106 (1294)
Q Consensus 1028 l~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~-~v~~~s 1106 (1294)
|+ .++..+ +++........+++..++++ +.+....+. +...-|
T Consensus 526 ---------------~~------------~~~~~i---~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~VG 569 (758)
T PRK13023 526 ---------------KS------------PRSALV---IIGSQEVGDDAEQTVAVKLR------GEFEQDYSFQRVDVVG 569 (758)
T ss_pred ---------------cC------------CCceEE---EEeCCCCcchHHHHHHHHHH------hhcCCCcceeEEEEEC
Confidence 00 000000 01110000000111111111 111111111 111112
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhhe
Q 000767 1107 VFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGI 1186 (1294)
Q Consensus 1107 ~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi 1186 (1294)
+. -=.++.+..+..+++|+++|++-+++-|+ ++.++..++.+.-=++.++|++.++|+++|...+..+...+|.
T Consensus 570 p~-----vg~el~~~ai~Av~ia~i~IliYI~~RF~-~~fav~AviALiHDvlivlg~fsl~~~e~~l~~IAAlLTiiGY 643 (758)
T PRK13023 570 PT-----VSEQLSRAGVLAVILSLIGIFIYVWFRFR-WQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGY 643 (758)
T ss_pred cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhCceecHHHHHHHHHHHhh
Confidence 11 11456678888888888888887777764 6667766666666678889999999999999999999999999
Q ss_pred eecceeeeehhhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 000767 1187 AVEFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLH 1261 (1294)
Q Consensus 1187 ~VD~~ihi~~~f~~~~-----~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~ 1261 (1294)
|++++|.+..|.++.. .+..+.+..++.++..-.+.++ +||++.+++|.+-....++.|-+.|+++ +++|...
T Consensus 644 SiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS-~TTll~~l~L~ifGg~~i~~Fal~lliG-iv~GtyS 721 (758)
T PRK13023 644 SLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTS-FVTFLAHVPLYAFGGSEIRMFALALSVG-IIVASYS 721 (758)
T ss_pred cccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHH-HHHHHHh
Confidence 9999999997777642 2466788888887666555554 5889999999887777788886666554 6888899
Q ss_pred HHHHHHHHHhhhC
Q 000767 1262 GLVFLPVVLSVFG 1274 (1294)
Q Consensus 1262 ~LvlLPvlLs~~g 1274 (1294)
++++-+.++.+++
T Consensus 722 SIfIAspl~~~~~ 734 (758)
T PRK13023 722 SIFIAAPLLVQFG 734 (758)
T ss_pred HHHHHHHHHHHHh
Confidence 9888777776775
No 32
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.81 E-value=3.9e-19 Score=208.81 Aligned_cols=207 Identities=17% Similarity=0.272 Sum_probs=176.2
Q ss_pred EecccCCchhHHHHHHHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 000767 1069 TYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSA 1148 (1294)
Q Consensus 1069 ~~~~~l~~~~d~i~al~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~l 1148 (1294)
...+......+..+.+++.++..++.....|.+++..|...+..+....+.++.....+++++++++++++.+||++.++
T Consensus 92 v~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~~~~l 171 (333)
T PF03176_consen 92 VQLKGDPGSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSVRAAL 171 (333)
T ss_pred EEecCCcchhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33343333445556677777777777656789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----HHHhccccchHH-HHHHHhhhheeecceeeeehhhhccC---CCHHHHHHHHHHHhhHHH
Q 000767 1149 IILLVLTMIVVDLMGV----MAILKIQLNAVS-VVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGASV 1220 (1294)
Q Consensus 1149 ii~l~i~~~~v~~~G~----M~l~gi~Ln~vs-lv~lvi~iGi~VD~~ihi~~~f~~~~---~~~~~ai~~al~~~g~~V 1220 (1294)
+.++++.++++..+|+ ++++|+++|.++ .+..++.+|+++||++|++++|+++. .+.++++++|++++|+||
T Consensus 172 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i 251 (333)
T PF03176_consen 172 LPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAI 251 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchh
Confidence 9999999999988888 566788888654 45667899999999999999998764 477899999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1221 FSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1221 ~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
+.++ +|+++||..|.+++.+.++.| +.+....++++++.+++++|+++.++|++.
T Consensus 252 ~~s~-ltt~~gf~~L~~s~~~~~~~~-G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 252 LLSA-LTTAIGFGSLLFSPFPPLRQF-GLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHH-HHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9986 699999999999999999987 455556678899999999999999999875
No 33
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.80 E-value=4.6e-16 Score=195.96 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCce
Q 000767 633 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 712 (1294)
Q Consensus 633 ~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~ 712 (1294)
..+++++++++|+++.++- .++...+.+++.++.++|++.++|.++|+ ...+--.+++|++||+.
T Consensus 914 A~lIglaLVlIFMlL~YRf--------------~GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdn 978 (1403)
T PRK12911 914 SVCLGLAVLIVLMSVYYRF--------------GGVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDAN 978 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCC
Confidence 3455555555565555431 16667777788899999999999999997 56666678899999999
Q ss_pred EehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 713 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 791 (1294)
Q Consensus 713 ~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL 791 (1294)
+++.++++++ ..+.+..+++..+..++..+|+.|++|++++++.+.+.....++.|++..++|++++++.++++.|+++
T Consensus 979 IVIfERIREELr~Gksl~eAI~~G~~~afs~ILdTnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll 1058 (1403)
T PRK12911 979 VLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFF 1058 (1403)
T ss_pred EEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999885 568899999999999999999999999999999887777777999999999999999999999999999
Q ss_pred HHhhhhc
Q 000767 792 VFDFLRA 798 (1294)
Q Consensus 792 ~l~~~r~ 798 (1294)
.+..++.
T Consensus 1059 ~l~l~~~ 1065 (1403)
T PRK12911 1059 MIWMNKT 1065 (1403)
T ss_pred HHHHhcC
Confidence 8877554
No 34
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.80 E-value=6.6e-18 Score=221.31 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhhc--ccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 000767 1081 VNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 1158 (1294)
Q Consensus 1081 i~al~~~r~ia~~~~~--~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~ 1158 (1294)
.++++++|+..++++. ..|+++...|......+...++.++....+.++++++++++++++||++.++++++++++++
T Consensus 228 ~~~~~~i~~~~~~~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~~~l~~l~~i~~s~ 307 (862)
T TIGR03480 228 EKAINAIRAAAKDLRLDEDHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPRLVFAVLVTLIVGL 307 (862)
T ss_pred HHHHHHHHHHHHhcccCCCCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566667777765532 35788888887767777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 000767 1159 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 1235 (1294)
Q Consensus 1159 v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L 1235 (1294)
++.+|+|+++|.++|.+|++..++.+|++|||++|++.+|+++ ++++++++++|++++|+|++.++ +||++||+.|
T Consensus 308 ~~~~~~~~l~~~~ln~~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~-lTt~~gf~~l 386 (862)
T TIGR03480 308 ILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAA-LATAAGFFAF 386 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999888764 34788999999999999999996 7999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000767 1236 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1236 ~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~ 1276 (1294)
.+++.+.++.+ +.+....++++++.+++++|+++++++|+
T Consensus 387 ~~~~~~~~~~l-g~~~~~gv~~s~l~~l~llP~l~~~~~~~ 426 (862)
T TIGR03480 387 LPTDYKGVSEL-GIIAGTGMFIALFVTLTVLPALLRLLRPP 426 (862)
T ss_pred HHcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99998888776 33444456788999999999999999654
No 35
>COG4258 Predicted exporter [General function prediction only]
Probab=99.76 E-value=8.7e-16 Score=177.40 Aligned_cols=254 Identities=17% Similarity=0.105 Sum_probs=163.3
Q ss_pred CeEEEEccchhHHHHHHhhhccchHHHH-HHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHh
Q 000767 608 NLTLAFSSESSIEEELKRESTADAITIV-ISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS 686 (1294)
Q Consensus 608 ~~~v~~~g~~s~~~el~~~~~~d~~~~~-is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~ 686 (1294)
..++.-+|.....++....++.|+.++. .+.+.+++.+.+.+|++|. -+.|++++..+.++++.-..
T Consensus 235 a~ql~~tGp~fyA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~Rv------------llLgvls~gig~laglvAt~ 302 (788)
T COG4258 235 AAQLLSTGPVFYADYARQQAKQDISTLGVASLLGIILLLLAVFRSLRV------------LLLGVLSIGIGALAGLVATL 302 (788)
T ss_pred hhhhhhcCCeeeeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchhH------------HHHHHHHhhHHHHHHHHHHH
Confidence 3444555555566788888888988774 4455666666677777642 34455555555555443333
Q ss_pred hhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHH
Q 000767 687 AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 766 (1294)
Q Consensus 687 ~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr 766 (1294)
+.--++.. ++.++-+-++|+.+||.|++..+.++-....|+- +..+|+-|.+++.-+|++++|+++.++++|.+|
T Consensus 303 laFg~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~----rsaaev~paL~lallTtvlayatmlfs~fpgLr 377 (788)
T COG4258 303 LAFGELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPW----RSAAEVRPALLLALLTTVLAYATMLFSPFPGLR 377 (788)
T ss_pred HHHhhHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChh----HHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 33234555 6778888899999999999876554422223333 347789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccCCCcCCCCCCCCCCCccHHHHHHHhHhhccccccc
Q 000767 767 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWG 846 (1294)
Q Consensus 767 ~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~ 846 (1294)
++++|+..|+..+++....++|.+.- +. ..|. -+....+.||... +=..++
T Consensus 378 QLa~faivGL~aAaltvrfllP~L~~----~a-~~rp--------------------v~~~arlarwlaa----~~~~~w 428 (788)
T COG4258 378 QLAIFAIVGLLAAALTVRFLLPWLCR----GA-PVRP--------------------VPAMARLARWLAA----WRRNKW 428 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC----CC-CCCC--------------------chHHHHHHHHHHh----cccccc
Confidence 99999999999999999999998741 11 0000 0111123334331 111111
Q ss_pred eeeehHHHHHHHHHHHhhhhhccCCCCcccccCCCCchhhhHHHHHHhhccCCCC-EEEEEec
Q 000767 847 VKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPP-LYFVVKN 908 (1294)
Q Consensus 847 ~r~~vl~~f~~l~~~si~~~~~i~~gld~~~~lp~dS~~~~~~~~i~~~~~~g~p-v~~Vv~~ 908 (1294)
....+.+.+.+......|....+.+.|...+-|-+-....-...+....+...- -+||+++
T Consensus 429 -~la~llVal~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~Gapdvry~fvv~g 490 (788)
T COG4258 429 -LLAGLLVALALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALTGAPDVRYWFVVYG 490 (788)
T ss_pred -hhhhHHHHHHHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 112223333334444678888888888888888877776655666666654322 3456665
No 36
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.72 E-value=6.4e-15 Score=192.00 Aligned_cols=373 Identities=17% Similarity=0.167 Sum_probs=232.6
Q ss_pred HHHHHHhchhhhccchHH--HHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEec
Q 000767 369 SNFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 446 (1294)
Q Consensus 369 ~~~f~~~g~~var~P~~v--l~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~ 446 (1294)
+.+..+|+.|+.+.+..+ +++.++..++..+|..+++..-||.++ +|+||+..+-.+..|+.|.+.+..-.+++.
T Consensus 422 ~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~-- 498 (798)
T PF02460_consen 422 RFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVVVN-- 498 (798)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEEec--
Confidence 444556788888776544 444555555677899999999999865 999999999999888888776543333332
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCCCCCCCCCCcccccc
Q 000767 447 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 526 (1294)
Q Consensus 447 ~~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~ 526 (1294)
+.+|.-+++..+++.++.+++++.+.....+.. ..-+.+-.+|.+.......+++..+....
T Consensus 499 ------~~~d~~~~~~~~~l~~lv~~fe~~~~~~~~~~t------------~~WL~~y~~~l~~~~~~~~~~~~~~~~~~ 560 (798)
T PF02460_consen 499 ------NPPDYSDPENQDRLNSLVQEFENSPYSIGNNST------------SFWLRDYLNFLNSINSSFQDDNDKEFFYN 560 (798)
T ss_pred ------CCCCccchHHHHHHHHHHHHHhccccccccccc------------hhhHHHHHHHHhhccccccccccceeeec
Confidence 124688899999999999998876431111100 01122223333221111111000000111
Q ss_pred cccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhccccccC
Q 000767 527 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 606 (1294)
Q Consensus 527 ~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~~ 606 (1294)
..+.... .+.+ .....+..+. ...++-..-++.+++...++..+. .+ ..++-+++.+..+++
T Consensus 561 ~l~~FL~----~~~~-~~~~~di~~~-~~~~~~~~I~a~rf~~~~~~~~~~----~~-~~~~~~~~R~i~~~~------- 622 (798)
T PF02460_consen 561 LLPEFLN----SPEY-RHYSNDIKFD-DSDNDTTQISAFRFTTQLKNLSDW----SD-RIEAMKDWRQIADKY------- 622 (798)
T ss_pred cchhhhc----cccc-cccccccccc-cccCCccceeeEEEEEEccCCCCH----HH-HHHHHHHHHHhhhcc-------
Confidence 0100000 0000 0111111111 001122233455555555443221 11 112222232222222
Q ss_pred CCeEEEE-ccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 607 KNLTLAF-SSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 607 ~~~~v~~-~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
+.+++.. +..-...|........-+..++++.+.|++...+.+.+. ..++...++++.-.+..+|+|
T Consensus 623 ~~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~------------~~~~~~~~~i~~i~~~v~G~m 690 (798)
T PF02460_consen 623 SDFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNP------------RSSLIVTLSILSIDVGVIGFM 690 (798)
T ss_pred eecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccc------------hhHHHHHHHHHHHHHHHHHhh
Confidence 2234432 222233344443333334457788888887766666553 335556666666677888999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHH
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 765 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~v 765 (1294)
.+.|+++++ ++.+.-.+.+|++||++.|+.++|.+.... ++++|+.+|++++|+|++-++++|++|.+.+++++...+
T Consensus 691 ~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~ 768 (798)
T PF02460_consen 691 SLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIF 768 (798)
T ss_pred hccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999998 688888889999999999999999875543 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 766 RVFSMFAALAVLLDFLLQITAFVALIVFD 794 (1294)
Q Consensus 766 r~F~i~aa~av~~~~l~~lt~~palL~l~ 794 (1294)
+.|.-...+.+++.++-.+.++|++|++.
T Consensus 769 ~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 769 RVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
No 37
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.64 E-value=8.8e-15 Score=193.53 Aligned_cols=192 Identities=12% Similarity=0.156 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHhhcc--cCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 000767 1079 DYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 1156 (1294)
Q Consensus 1079 d~i~al~~~r~ia~~~~~~--~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~ 1156 (1294)
+.++..+++++..+++++. .|+++...+ ...+.......+...+++.+++++++++++++++++.++++++++++
T Consensus 291 n~~~v~~~v~~~l~~~~~~lP~g~~~~~~~---d~~~~i~~~~~~~~~~l~~~~ilv~lvl~lfl~~~r~~l~~~~~IP~ 367 (1017)
T PRK09579 291 NPLDVIKEVRAIMPELESQLPPNLKVSIAY---DATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPL 367 (1017)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEEe---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344445555555544322 255543221 11122234456777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhh---hccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000767 1157 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVI 1233 (1294)
Q Consensus 1157 ~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f---~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~ 1233 (1294)
++++++++|+++|++||.+|++++++++|+.||++||++.++ ++.++++.+|+.++.+++++||+++. +||++||+
T Consensus 368 s~~~~~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~st-lTti~~f~ 446 (1017)
T PRK09579 368 SMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMT-ITLAAVYA 446 (1017)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999544 34456899999999999999999885 79999999
Q ss_pred hhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 000767 1234 VLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1275 (1294)
Q Consensus 1234 ~L~fs~~---~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp 1275 (1294)
|++|..+ ++++.+ .......++++++.+++++|++++++-+
T Consensus 447 Pl~f~~g~~g~~~~~l-~~~v~~~l~~S~l~al~l~P~l~~~~~~ 490 (1017)
T PRK09579 447 PIGFLTGLTGALFKEF-ALTLAGAVIISGIVALTLSPMMCALLLR 490 (1017)
T ss_pred HHhhcCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999874 334433 2334445678899999999999998854
No 38
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.63 E-value=5.9e-15 Score=191.30 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=158.5
Q ss_pred EEEecccCCchhHHHHHHHHHHHHHHHhhcc--cCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 000767 1067 FRTYHTPLNRQIDYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSF 1144 (1294)
Q Consensus 1067 f~~~~~~l~~~~d~i~al~~~r~ia~~~~~~--~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~ 1144 (1294)
+..+..+-.+.-|..++ .|+..+++++. .|+++. ..|...+-.....++....++.|++++++|++++++++
T Consensus 280 l~V~~~~gaN~v~v~~~---V~~~l~~l~~~lP~gv~~~---~~~D~t~~V~~si~~v~~tL~~a~~lVv~Vi~lFL~~~ 353 (1009)
T COG0841 280 LAVKKAPGANALDTAKA---VKAKLAELQANLPQGVDIA---IPYDTTEFIKASIEEVIKTLFEAIVLVVLVMYLFLGNL 353 (1009)
T ss_pred EEEEECCCCCHHHHHHH---HHHHHHHHHHhCCCCcEEE---EecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 44444444333344333 33444444332 355542 22222344456677889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee---hhhhccCCCHHHHHHHHHHHhhHHHH
Q 000767 1145 WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVSSGDKNQRMKEALGTMGASVF 1221 (1294)
Q Consensus 1145 ~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~---~~f~~~~~~~~~ai~~al~~~g~~V~ 1221 (1294)
++++++.+++++++++++++|+++|++||.+|+..+++++|+.||++|.++ +++++ +.++.+|+.++.++++.||+
T Consensus 354 ratlI~~iaiPlsLlgtf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVVvENI~R~~~-G~~p~~Aa~~a~~ei~~~vi 432 (1009)
T COG0841 354 RATLIPALAVPVSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVVVENIERHMR-GLPPREAAEKAMGEIGGAVI 432 (1009)
T ss_pred ceeEEeeeechHHHHHHHHHHHHhCccchHhHHHHHHHhhheeEeccEEEEeeEEeecC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 44455 66899999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 000767 1222 SGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 1278 (1294)
Q Consensus 1222 ~~~~lTt~~G~~~L~fs~~~---~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~~ 1278 (1294)
.+ |+|++++|+|++|.++- +|+.| +..++..++++++.+++|.|+|.+.+-++.+
T Consensus 433 a~-TlvliaVF~Pi~f~~G~~G~~f~~f-~~tia~a~~~S~~vAltltP~L~a~lLk~~~ 490 (1009)
T COG0841 433 AI-TLVLIAVFLPMAFMGGSTGELFRQF-AITIAVAMLLSLLVALTLTPALCARLLKPVP 490 (1009)
T ss_pred HH-HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 77 58999999999999864 44444 3344455788999999999999999976644
No 39
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.62 E-value=2.2e-14 Score=190.48 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeee
Q 000767 1115 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1194 (1294)
Q Consensus 1115 y~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi 1194 (1294)
.....++...+++++++++++++++++++++.++++++++++++++++++|+++|++||.+|+.++++++|+.||++||+
T Consensus 327 i~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r~~li~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv 406 (1025)
T PRK10614 327 IRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVV 406 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhheeecCcEEE
Confidence 34456677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e---hhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1195 T---HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPV 1268 (1294)
Q Consensus 1195 ~---~~f~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~---~~~~~f~f~~~~~~v~~g~l~~LvlLPv 1268 (1294)
+ +++++.+.++.+|+.++.++++.|++.+ ++||++||+|++|..+ ++++.+ .......++++++.+++++|+
T Consensus 407 ~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~s-tltti~~f~Pl~~~~g~~g~~~~~~-~~~~~~~l~~S~~~al~~~P~ 484 (1025)
T PRK10614 407 LENISRHLEAGMKPLQAALQGVREVGFTVLSM-SLSLVAVFLPLLLMGGLPGRLFREF-AVTLSVAIGISLLVSLTLTPM 484 (1025)
T ss_pred EeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9 4555555688999999999999999998 4799999999999876 445554 333445577889999999999
Q ss_pred HHhhhCCC
Q 000767 1269 VLSVFGPP 1276 (1294)
Q Consensus 1269 lLs~~gp~ 1276 (1294)
+++++.++
T Consensus 485 l~~~~~~~ 492 (1025)
T PRK10614 485 MCAWLLKS 492 (1025)
T ss_pred HHHHhccC
Confidence 99998643
No 40
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.61 E-value=2.8e-14 Score=189.39 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeeh
Q 000767 1117 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1196 (1294)
Q Consensus 1117 ~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~ 1196 (1294)
...++...++++++++++++++++|+|++.++++++++++++++++++|+++|++||.+|++++++++|+.||++||++.
T Consensus 334 ~~i~~~~~~l~~~~ilv~lvl~l~l~s~r~~liv~~~iP~s~~~~~~~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie 413 (1032)
T PRK09577 334 VSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVE 413 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHheeeEecCcEEEeh
Confidence 34567778888999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1197 AFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVF---VVYYFQMYLALVLLGFLHGLVFLPVV 1269 (1294)
Q Consensus 1197 ~f~~----~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~---~~f~f~~~~~~v~~g~l~~LvlLPvl 1269 (1294)
++.+ .+.++.+++.+|.+++++||+.+ |+|++++|+|++|..+... +.+ .......++++++.+++++|++
T Consensus 414 ~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~-tlt~~~~flPl~~~~g~~g~~~~~~-~~~v~~~l~~S~~~al~~~P~l 491 (1032)
T PRK09577 414 NVERLMVEEGLSPYDATVKAMKQISGAIVGI-TVVLTSVFVPMAFFGGAVGNIYRQF-ALSLAVSIGFSAFLALSLTPAL 491 (1032)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5532 34588999999999999999977 5799999999999885443 332 2233445678899999999999
Q ss_pred HhhhCC
Q 000767 1270 LSVFGP 1275 (1294)
Q Consensus 1270 Ls~~gp 1275 (1294)
+..+.+
T Consensus 492 ~~~~~~ 497 (1032)
T PRK09577 492 CATLLK 497 (1032)
T ss_pred HHHhcC
Confidence 998864
No 41
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.60 E-value=4.4e-14 Score=187.66 Aligned_cols=158 Identities=13% Similarity=0.253 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
....++...++++++++++++++++++|++.++++++++++++++++++|+++|++||.+|++++++++|+.||++||++
T Consensus 334 ~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r~~li~~~~iP~s~~~~~~~~~~~g~~ln~~sl~gli~~iGi~VD~aIvv~ 413 (1044)
T TIGR00915 334 SASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVV 413 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecceEEEe
Confidence 45567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPV 1268 (1294)
Q Consensus 1196 ~~f~~----~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~---~~~~f~f~~~~~~v~~g~l~~LvlLPv 1268 (1294)
.++.+ .+.++.+++.++.+++++|++.+. +||++||+||+|..+. +++.+ ....+..++++++.+++++|+
T Consensus 414 e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~tt-ltti~~flPl~~~~G~~g~~~~~~-~~~i~~~l~~S~l~al~~~P~ 491 (1044)
T TIGR00915 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1044)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 64432 244889999999999999999874 7999999999998753 33433 223344567889999999999
Q ss_pred HHhhhCC
Q 000767 1269 VLSVFGP 1275 (1294)
Q Consensus 1269 lLs~~gp 1275 (1294)
++.++.+
T Consensus 492 l~~~~~~ 498 (1044)
T TIGR00915 492 LCATMLK 498 (1044)
T ss_pred HHHHhcC
Confidence 9988754
No 42
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.60 E-value=3.9e-14 Score=187.94 Aligned_cols=159 Identities=14% Similarity=0.261 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
....++...++.+++++++++++++++|++.++++++++++++++++++|+++|++||.+|++++++++|+.||++||++
T Consensus 334 ~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r~~li~~~~iP~sl~~~~~~~~~~g~~ln~~sl~glil~iGi~VD~aIvvi 413 (1049)
T PRK15127 334 KISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVV 413 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHhhccceEEEe
Confidence 44567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPV 1268 (1294)
Q Consensus 1196 ~~f~~----~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~---~~~~f~f~~~~~~v~~g~l~~LvlLPv 1268 (1294)
.++.+ .+.++.+++.++.+++++|++.+. +||++||+||+|..+. +++.+ ...++..++++++.+++++|+
T Consensus 414 e~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~t-ltt~~~f~Pl~~~~G~~g~~~~~~-~~~~~~~l~~S~l~al~~vP~ 491 (1049)
T PRK15127 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1049)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 65532 345889999999999999999874 7999999999997653 34433 233344567889999999999
Q ss_pred HHhhhCCC
Q 000767 1269 VLSVFGPP 1276 (1294)
Q Consensus 1269 lLs~~gp~ 1276 (1294)
++.++.++
T Consensus 492 l~~~~l~~ 499 (1049)
T PRK15127 492 LCATMLKP 499 (1049)
T ss_pred HHHHhCCc
Confidence 99987643
No 43
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.59 E-value=4.6e-14 Score=187.36 Aligned_cols=159 Identities=13% Similarity=0.265 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
....++....+++++++++++++++++|++.++++++++++++++++|+|+++|+++|.+|++++++++|+.||++||++
T Consensus 334 ~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r~~li~~~~iP~si~~t~~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvv 413 (1037)
T PRK10555 334 KASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVV 413 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhhHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecCeEEeH
Confidence 45667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPV 1268 (1294)
Q Consensus 1196 ~~f~~----~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~---~~~~f~f~~~~~~v~~g~l~~LvlLPv 1268 (1294)
.++.+ .+.++.+++.+|.+++++|++.+. +||+++|+|++|.++. +++.+ .......++++++.+++++|+
T Consensus 414 e~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~st-ltti~~flPl~~~~G~~g~~~~~l-~~~v~~~l~~S~~~al~l~P~ 491 (1037)
T PRK10555 414 ENVERIMSEEGLTPREATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGTTGAIYRQF-SITIVSAMVLSVLVAMILTPA 491 (1037)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 65543 245889999999999999998874 7999999999998754 33333 222334567888999999999
Q ss_pred HHhhhCCC
Q 000767 1269 VLSVFGPP 1276 (1294)
Q Consensus 1269 lLs~~gp~ 1276 (1294)
++..+.++
T Consensus 492 l~~~~~~~ 499 (1037)
T PRK10555 492 LCATLLKP 499 (1037)
T ss_pred HHHHHccc
Confidence 99987654
No 44
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.59 E-value=5.1e-14 Score=186.75 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeeccee
Q 000767 1113 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCV 1192 (1294)
Q Consensus 1113 eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~i 1192 (1294)
+......++...+++++++++++++++++++++.++++.+++++++++++++|+++|++||.+|++++++++|+.||++|
T Consensus 334 ~~i~~~i~~~~~~l~~~~~lv~~vl~lfl~~~r~~~i~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iG~~Vd~aI 413 (1040)
T PRK10503 334 TNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAI 413 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHheeeeecCeE
Confidence 44455567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhhh---ccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1193 HITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFL 1266 (1294)
Q Consensus 1193 hi~~~f~---~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~---~~~~~f~f~~~~~~v~~g~l~~LvlL 1266 (1294)
|++.++. +.+.++.+++.++..+++.|++++ |+||+++|+|++|++. ++++.+ .......++++++.+++++
T Consensus 414 vv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~-tltti~~f~Pl~~~~g~~G~~~~~~-~~~v~~~l~~S~~~al~~~ 491 (1040)
T PRK10503 414 VVIENISRYIEKGEKPLAAALKGAGEIGFTIISL-TFSLIAVLIPLLFMGDIVGRLFREF-AVTLAVAILISAVVSLTLT 491 (1040)
T ss_pred EEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9995443 334577899999999999999988 5899999999999875 555554 2334455778899999999
Q ss_pred HHHHhhhCC
Q 000767 1267 PVVLSVFGP 1275 (1294)
Q Consensus 1267 PvlLs~~gp 1275 (1294)
|++++.+.+
T Consensus 492 P~l~~~~l~ 500 (1040)
T PRK10503 492 PMMCARMLS 500 (1040)
T ss_pred HHHHHHhCc
Confidence 999997754
No 45
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.57 E-value=3.2e-14 Score=190.28 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHhhcc--cCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 000767 1079 DYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 1156 (1294)
Q Consensus 1079 d~i~al~~~r~ia~~~~~~--~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~ 1156 (1294)
+.++..+++++..+++++. .|+++... +.-.+..++..+....++.++++++++++++++++++.++++.+++++
T Consensus 291 n~v~~~~~v~~~l~~~~~~lp~~~~~~~~---~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfl~~~r~~liv~~~IPi 367 (1021)
T PF00873_consen 291 NIVEVSDAVKKRLEELQKTLPEGLEITIV---YDQSEYIEESINNLISNLLIGIILVVLVLLLFLRNWRSALIVALSIPI 367 (1021)
T ss_dssp BHHHHHHHHHHHHHHHGGGSSTTEEEEEE---EESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccceEEEE---EechHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 3455555666666666543 24554322 233344556667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee---hhhhcc-CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000767 1157 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGV 1232 (1294)
Q Consensus 1157 ~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~---~~f~~~-~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~ 1232 (1294)
++++++++|+++|++||.+|+.++++++|+-||++|.++ ++++++ ++++.+++.++.++++.|++.+ |+||++.|
T Consensus 368 si~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~s-tlTti~vF 446 (1021)
T PF00873_consen 368 SILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILAS-TLTTIAVF 446 (1021)
T ss_dssp HHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999998 445556 7799999999999999999988 58999999
Q ss_pred HhhhccCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000767 1233 IVLCFSRTEVFV---VYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1233 ~~L~fs~~~~~~---~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~ 1276 (1294)
+|++|.++..-+ .+ ...+...++++++.+++++|++.+++-++
T Consensus 447 ~Pl~f~~G~~g~~~~~l-~~~v~~al~~Sllval~~~P~l~~~~l~~ 492 (1021)
T PF00873_consen 447 LPLLFMPGIAGQFFRPL-ALTVIIALIASLLVALTLVPALAALFLKP 492 (1021)
T ss_dssp CGGGGSBHHHHHHHHHH-HHHHHHHHHHHHHHHHTTHHHHHHHCS--
T ss_pred hhhhhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 999999864333 22 12223346778999999999999987543
No 46
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.57 E-value=6.3e-14 Score=150.21 Aligned_cols=128 Identities=15% Similarity=0.238 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeeh
Q 000767 1117 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1196 (1294)
Q Consensus 1117 ~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~ 1196 (1294)
+..++...+++++++++++++++.++ ++.++.++++++..++.++|+|+++|+++|..+++.+++++|++||+++|+..
T Consensus 44 ~~~~~~~~~l~~a~~lv~l~l~~~~r-~~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e 122 (192)
T TIGR00916 44 ELIKAGIIALLIGLVLVLLYMLLRYE-WRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFD 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehH
Confidence 44567788889999999999999888 77788888888888999999999999999999999999999999999999997
Q ss_pred hhhc-----cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHH
Q 000767 1197 AFSV-----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1246 (1294)
Q Consensus 1197 ~f~~-----~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f 1246 (1294)
+|++ ++.++++++.+|.+++++|++.+. +||++||++|.++..+.++.|
T Consensus 123 ~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~tt-lTtii~f~pl~~~~~~~~~~~ 176 (192)
T TIGR00916 123 RIREELRKYKGRTFREAINLGINQTLSRIIDTN-VTTLLAVLALYVFGGGAIKGF 176 (192)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH
Confidence 7764 345889999999999999999996 799999999999988776654
No 47
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.57 E-value=2.1e-13 Score=155.15 Aligned_cols=158 Identities=12% Similarity=0.195 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
.++.+.....++++++++++.+.+.|+ ++.+++++++++..+++++|+|.++|+++|..++..+++.+|++||+++|+.
T Consensus 123 ~~~~~~~~~a~~~al~~i~i~l~~~F~-~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG~sVnd~Ivv~ 201 (289)
T PRK13022 123 KELAQKGLLALLVALVGILIYIAFRFE-WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIGYSLNDTVVVF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHheeceEEEe
Confidence 566778888889999999999888885 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1270 (1294)
Q Consensus 1196 ~~f~~~-----~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlL 1270 (1294)
.++++. +++.++++.+|..++++|++.++ +||++|+++|++..++.++.|...+ +..++.|++.++++.|.++
T Consensus 202 drire~~~~~~~~~~~~av~~a~~~~~~~~l~Ts-lTTl~~~l~L~~~g~~~i~~fa~~l-~~Gli~~~~~sl~i~p~l~ 279 (289)
T PRK13022 202 DRIRENFRKIRRKTFAEIINLSINQTLSRTIITS-LTTLLVVLALYLFGGGTLHDFALAL-LIGIIVGTYSSIFVASPLL 279 (289)
T ss_pred eHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 777643 34788999999999999999996 7999999999999888888774444 4457889999999999999
Q ss_pred hhhCCC
Q 000767 1271 SVFGPP 1276 (1294)
Q Consensus 1271 s~~gp~ 1276 (1294)
.+++.+
T Consensus 280 ~~~~~~ 285 (289)
T PRK13022 280 LWLGVR 285 (289)
T ss_pred HHHhhc
Confidence 998643
No 48
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.56 E-value=1.3e-12 Score=169.99 Aligned_cols=178 Identities=17% Similarity=0.065 Sum_probs=143.6
Q ss_pred CCeEEEEccchhHHHH-HHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 607 KNLTLAFSSESSIEEE-LKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 607 ~~~~v~~~g~~s~~~e-l~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
.+++++..|...+-.| ........+..+.++.+.||++.++.+++. +.++..++++++.++..+|+|
T Consensus 943 ~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~------------~~a~iv~l~v~~i~v~v~G~M 1010 (1145)
T TIGR00918 943 FGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNP------------WTAGLIVLVLALMTVELFGMM 1010 (1145)
T ss_pred cCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3466655554443222 222222223345666677877777777653 346667788888999999999
Q ss_pred hhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCch-H
Q 000767 686 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP-A 764 (1294)
Q Consensus 686 ~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p-~ 764 (1294)
++.|+++|. ++.+.-.+.+|+|||++.|+.++|... ..++++|+.+||+++|.|++.+++|+++|.++++++++. .
T Consensus 1011 ~lwgI~Lna-VS~vnLimsIGisVefsaHI~~~F~~~--~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~~~ 1087 (1145)
T TIGR00918 1011 GLLGIKLSA-IPVVILIASVGIGVEFTVHIALGFLTA--IGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFI 1087 (1145)
T ss_pred HHHcCCccH-HHHHHHHHHHhhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 999999997 688888889999999999999999853 345799999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 000767 765 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 799 (1294)
Q Consensus 765 vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~ 799 (1294)
++.|+...++.|+++++-.++++|.+|++.+.+.+
T Consensus 1088 ~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp~~~ 1122 (1145)
T TIGR00918 1088 VRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGPEPE 1122 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 89999999999999999999999999999887654
No 49
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.56 E-value=2.5e-12 Score=163.06 Aligned_cols=374 Identities=16% Similarity=0.180 Sum_probs=238.8
Q ss_pred HHHHHhchhhhccchHH--HHHHHHHHHHHhhccccceeccCCCcceeCCCChhHHHHHHhhhccCCCCceeEEEEEecC
Q 000767 370 NFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 447 (1294)
Q Consensus 370 ~~f~~~g~~var~P~~v--l~i~llv~~~l~~Gl~~l~~etdp~~lw~p~~s~~~~e~~~f~~~Fgp~~r~eqvii~~~~ 447 (1294)
.+.++|+.|+.+.+..+ +++.++-..++.+|..+++..-||.++ ++.||+..+-.+..++.|-+.+..-++++..
T Consensus 456 ~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl-~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~n-- 532 (868)
T KOG1934|consen 456 FFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKL-LPEDSPLVKSLRLQEKYFWEYGQQVAVFVNN-- 532 (868)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHc-ccccCcchHHHHHHHHHhhccCceEEEEEcC--
Confidence 55566777776554433 333444455678899999999999999 8999999999998888887765444444432
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccCccccccccccccCCCCccccchhhhhccCCCCC-C-CCCCccccc
Q 000767 448 DTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNF-D-DFGGVEHVK 525 (1294)
Q Consensus 448 ~~~~~~~~~il~~~~L~~i~~l~~~l~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~-~-~~~~~~~l~ 525 (1294)
-||+-+++.++.+.++.++++..+... |+..| .+-+.+-.+|........ + +..+..+..
T Consensus 533 ------p~dl~~~~~~~~~~~~~~~fE~~~~~~-G~~sT-----------~~wlr~y~~~~~~~~~~~~~~~~~~~~~~~ 594 (868)
T KOG1934|consen 533 ------PPDLSNPENRDNLNELVSEFESTPYSM-GREST-----------KFWLREYLNFLFEKNAELEDNDDEFYDHLY 594 (868)
T ss_pred ------CccCCCHHHHHHHHHHHHHHhcCCccc-Ccccc-----------hhHHHHHHHHHhhhcccccCCCcchhhhhH
Confidence 256888999999999999998865321 11111 112222223311111111 0 111111111
Q ss_pred ccccccCCCccccccCCCCCCCCccccCccCCcccceeEEEEEEEeecccCcCchhhHHHHHHHHHHHHHHHhhcccccc
Q 000767 526 YCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQ 605 (1294)
Q Consensus 526 ~~~~~~~~~~~cl~~~~~Pl~~~~~lGg~~~~~~~~a~alvit~~l~~~~~~~~~~~~~a~~we~~~~~~v~~~~~~~~~ 605 (1294)
.-+.. .+.+ .+-......+.. .++-..-.++...+...+..+. .+..+..+.|++.. ++
T Consensus 595 ~~fl~-------~~~~-~~~~~di~~~~~-~~~~~~i~~f~f~~~~~~~~~~-~~~~~~~~~~R~ia----~~------- 653 (868)
T KOG1934|consen 595 ESFLK-------SPEF-SFWRNDIVFDNK-SDEETIIFAFRFTIGLTNLTKW-NERTRLLETWRKIA----DE------- 653 (868)
T ss_pred HHHhc-------cccc-ccCccceEeccC-CCCCceEEEEEEEEEEeccCCH-HHHHHHHHHHHHHH----hh-------
Confidence 00000 0001 111122222211 1111233455666666654321 12223334444321 22
Q ss_pred CCCeEEEEccc-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSE-SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 684 (1294)
Q Consensus 606 ~~~~~v~~~g~-~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl 684 (1294)
.+++++....+ ....|.+......-+..++++++.|+++.++.+.+. ...+...++++.--+..+|+
T Consensus 654 ~~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~------------~~~~~it~si~SI~~GV~G~ 721 (868)
T KOG1934|consen 654 YSDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPNP------------LCVFWITLSIVSINIGVFGF 721 (868)
T ss_pred ccCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHhheeehHhhh
Confidence 23444443333 345566666555556678888888888777766542 22232333333333567799
Q ss_pred HhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchH
Q 000767 685 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 764 (1294)
Q Consensus 685 ~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~ 764 (1294)
|++.|+++++ ++++.-.+-+|-.||+.-|+..+|.+.....+..+|+..+++.+|+|++-++++|++|.+.+++.+...
T Consensus 722 lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V~sYm 800 (868)
T KOG1934|consen 722 LSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFVPSYM 800 (868)
T ss_pred hHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhchHHH
Confidence 9999999998 677777788888899999999888776554689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000767 765 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 798 (1294)
Q Consensus 765 vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~ 798 (1294)
++.|.-...+.+.+.++=-+.++|++|++..+..
T Consensus 801 v~vF~KTv~LVv~~GllHGLv~LPviLs~f~~~~ 834 (868)
T KOG1934|consen 801 VQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPIK 834 (868)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999977543
No 50
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.52 E-value=7.7e-13 Score=147.72 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
.++.+.....++++++++++.+.+.|+ ++.+++++++++..+++++|+|+++|+++|..++..+++++|++||++|++.
T Consensus 94 ~~~~~~~~~~~~la~i~i~l~l~~~f~-~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~ 172 (246)
T TIGR00966 94 GELARKAVLALLAALVLILIYITVRFE-WRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVF 172 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEe
Confidence 455666677777777777777777666 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLV 1264 (1294)
Q Consensus 1196 ~~f~~~-----~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~Lv 1264 (1294)
.++++. +++..+++.+|.+++++|++.+. +||++|++||++...+.++.|...+ +..+++|.+.+++
T Consensus 173 d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~tt-ltti~~flpl~~~~g~~~~~~a~~~-~~Gli~~t~~sl~ 244 (246)
T TIGR00966 173 DRIRENLRKYTRKTFTEVINLSINQTLSRTINTS-LTTLLAVLALYVFGGGVIKDFSLAL-LVGVIVGTYSSIF 244 (246)
T ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHH
Confidence 666532 35788999999999999999996 7999999999999876666653222 2234455555544
No 51
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.52 E-value=3.4e-13 Score=180.04 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
....++...++++++++++++++++++|++.++++.+++++++++++.+|+++|++||.+|+. ++++|+.||++|+++
T Consensus 337 ~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r~~liv~~~iP~s~~~~~~~m~~~g~sln~~sl~--~l~iGilVDdaIVvv 414 (1051)
T TIGR00914 337 DAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGISANLMSLG--ALDFGLIVDGAVVIV 414 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH--HHHHHhhhcCcEEee
Confidence 445567788889999999999999999999999999999999999999999999999999985 567799999999998
Q ss_pred hh---hhcc-----C-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHH
Q 000767 1196 HA---FSVS-----S-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGF 1259 (1294)
Q Consensus 1196 ~~---f~~~-----~-----~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~---~~~~~f~f~~~~~~v~~g~ 1259 (1294)
.+ ++++ + .++.+|+.++.+++++||+++. +||+++|+|++|..+ ++++.+ ...++..+++++
T Consensus 415 E~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~st-lTti~~flPl~~~~g~~g~~~~~~-~~~v~~~l~~Sl 492 (1051)
T TIGR00914 415 ENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQ-LIITLVFLPIFTLTGVEGKMFHPM-AFTVVLALAGAM 492 (1051)
T ss_pred hHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccchHHHHhHHH-HHHHHHHHHHHH
Confidence 43 2222 1 3567899999999999999985 899999999999875 344443 233344567889
Q ss_pred HHHHHHHHHHHhhhCC
Q 000767 1260 LHGLVFLPVVLSVFGP 1275 (1294)
Q Consensus 1260 l~~LvlLPvlLs~~gp 1275 (1294)
+.+|+++|++++++.+
T Consensus 493 l~al~~~P~l~~~~~~ 508 (1051)
T TIGR00914 493 ILSLTFVPAAVALFIR 508 (1051)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998853
No 52
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.51 E-value=7.4e-12 Score=166.49 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHhch------------hhHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhhhheeec
Q 000767 1123 LINLAIAIGAVFVVCLITTCS------------FWSSAIILLVLTMIVVDLMGVMAILKIQLNAV-SVVNLVMAVGIAVE 1189 (1294)
Q Consensus 1123 ~~~l~~al~~v~iv~~l~~~s------------~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~v-slv~lvi~iGi~VD 1189 (1294)
+..++++.+++++.+.+.++. ++.++..++.++++++..+|+|.++|++++.+ +.+...+.+|++||
T Consensus 572 v~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD 651 (1204)
T TIGR00917 572 VITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVD 651 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Confidence 335666666666554443322 44567777788888999999999999999975 56666777788898
Q ss_pred ceeeeehhhhccC----C---------CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 000767 1190 FCVHITHAFSVSS----G---------DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL 1256 (1294)
Q Consensus 1190 ~~ihi~~~f~~~~----~---------~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~ 1256 (1294)
+.-+++++|.+.. . +.++|+.++++++|.||+.++ +|+++||+..++++.+.++.| ....++.++
T Consensus 652 ~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~lts-lt~~~aF~~g~~s~~Pavr~F-~~~aa~av~ 729 (1204)
T TIGR00917 652 NIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLAS-LSESLAFFLGALSKMPAVRAF-SLFAGLAVF 729 (1204)
T ss_pred HHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHhccCChHHHHH-HHHHHHHHH
Confidence 7666667664311 1 578999999999999999997 799999999999999999987 344455678
Q ss_pred HHHHHHHHHHHHHHhhhCCC
Q 000767 1257 LGFLHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1257 ~g~l~~LvlLPvlLs~~gp~ 1276 (1294)
+.++..++++|++|++-+.+
T Consensus 730 ~~fll~it~f~alL~ld~rR 749 (1204)
T TIGR00917 730 IDFLLQITAFVALLVLDFKR 749 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988643
No 53
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.49 E-value=6.4e-13 Score=151.15 Aligned_cols=165 Identities=11% Similarity=0.234 Sum_probs=142.9
Q ss_pred hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhh
Q 000767 617 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 696 (1294)
Q Consensus 617 ~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~ 696 (1294)
+++.+|+.+. -...+++++++|++|+.+.++ + ..++..++.++.+++.++|+++++|++++. .
T Consensus 119 ~~vg~~~~~~---~~~a~~~al~~i~i~l~~~F~-~------------~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~ 181 (289)
T PRK13022 119 PQVGKELAQK---GLLALLVALVGILIYIAFRFE-W------------RFALGAIIALLHDVIITLGIFSLFQIEFDL-T 181 (289)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4565666543 344567888889988887663 3 247888999999999999999999999997 6
Q ss_pred HHHHHHHhhhcccCceEehhHHHHHhc---CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 000767 697 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 773 (1294)
Q Consensus 697 ~~vipflvlgIGvD~~~~l~~~~~~~~---~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa 773 (1294)
+.+...+++|+++||.+++.+++++.. ++.+.++++.++..+...+++.|++|++++|+.+.+.+.+.++.|++...
T Consensus 182 siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~ 261 (289)
T PRK13022 182 VIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFGGGTLHDFALALL 261 (289)
T ss_pred HHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 777777889999999999999998853 36789999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 000767 774 LAVLLDFLLQITAFVALIVFDFLRA 798 (1294)
Q Consensus 774 ~av~~~~l~~lt~~palL~l~~~r~ 798 (1294)
+|++.+++.++++.|+++.+..+|.
T Consensus 262 ~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 262 IGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999876654
No 54
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.46 E-value=6.2e-13 Score=142.62 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCc
Q 000767 632 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 711 (1294)
Q Consensus 632 ~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~ 711 (1294)
..+.++++++++++.+.+| + ..++..+++++.++++++|+|+++|+++|. .+.+.+.+++|+++||
T Consensus 51 ~~l~~a~~lv~l~l~~~~r-~------------~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~ 116 (192)
T TIGR00916 51 IALLIGLVLVLLYMLLRYE-W------------RGAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDD 116 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcC
Confidence 3467778888888777665 2 125667778888899999999999999997 7888889999999999
Q ss_pred eEehhHHHHHh-c--CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH
Q 000767 712 MCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 783 (1294)
Q Consensus 712 ~~~l~~~~~~~-~--~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~ 783 (1294)
.+|+++++++. + ++.+.++++.++.++.+++++.|++|++++|+.+.+.+.+.+|.|++...+|++++++.+
T Consensus 117 aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 117 TVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred eEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999874 3 578999999999999999999999999999999999999999999999999999998765
No 55
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.43 E-value=4.2e-12 Score=161.71 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeee
Q 000767 1115 YLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1194 (1294)
Q Consensus 1115 y~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi 1194 (1294)
-.+..+.....++++++++++++++.+++ .++++++.+++.++.++|+|+++|+++|..++.++++++|++||+++|+
T Consensus 261 g~~a~~~~~~a~~ial~lV~i~l~~~fr~--~~lia~ial~~~v~~~l~~l~l~g~~l~l~siaglil~iGi~Vd~~Ivi 338 (755)
T PRK13024 261 GQDAIDAGIIAGIIGFALIFLFMLVYYGL--PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLI 338 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhCcEEe
Confidence 34556778888899999999999999986 6888888888999999999999999999999999999999999999999
Q ss_pred ehhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1195 THAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1271 (1294)
Q Consensus 1195 ~~~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs 1271 (1294)
..+++++ +++.++++.++.++.++|++.+. +||++|+++|.+.....++.|. .++++.++++++.+++++|+++.
T Consensus 339 ~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~-lTTii~~lpL~~~g~g~~~~fa-itl~~Gli~s~~~sl~v~p~l~~ 416 (755)
T PRK13024 339 FERIKEELRKGKSLKKAFKKGFKNAFSTILDSN-ITTLIAAAILFFFGTGPVKGFA-TTLIIGILASLFTAVFLTRLLLE 416 (755)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9777653 45788999999999999999996 7999999999987766677763 34445678899999999999999
Q ss_pred hhCCCC
Q 000767 1272 VFGPPS 1277 (1294)
Q Consensus 1272 ~~gp~~ 1277 (1294)
++.++.
T Consensus 417 ~~~~~~ 422 (755)
T PRK13024 417 LLVKRG 422 (755)
T ss_pred HhhccC
Confidence 986553
No 56
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.41 E-value=9.9e-12 Score=147.17 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
.+..+..+..+++++++|+++++++++ +.+++..+++++.++.++|+|+++|++||..++.++++++|++||+++++.
T Consensus 244 ~~~i~~~~~a~~ig~ilV~l~~~~~yr--~~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~ 321 (397)
T TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYR--LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIY 321 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEe
Confidence 345567888889999999999999998 678888899999999999999999999999999999999999999999999
Q ss_pred hhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1270 (1294)
Q Consensus 1196 ~~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlL 1270 (1294)
.+++++ +++..+++.++.+++++||+.+. +||++++++|.+..+..++.|. .+++..++++++.++++.+.++
T Consensus 322 erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~-lTtlia~l~L~~~g~g~~~~fA-~tl~igii~s~~~sl~vtr~~~ 397 (397)
T TIGR01129 322 ERIKEELRLGKSVRQAIEAGFERAFSTIFDAN-ITTLIAALILYVFGTGPVKGFA-VTLAIGIIASLFTALVFTRLLL 397 (397)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 777643 45788999999999999999986 7999999999986666677664 3344457888899999988764
No 57
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.40 E-value=9.9e-12 Score=141.58 Aligned_cols=155 Identities=19% Similarity=0.253 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
.+..+.....+++|++++++++++.|++++.++.++++++..+++++|+|+++|+++|..++..+++++|++||++|++.
T Consensus 130 ~~~~~~~~~al~~alilI~i~l~l~F~s~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~ 209 (292)
T PRK08578 130 SQFQEQALKAVGFAFIGMAVVVFLIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLT 209 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHHHHHheeecCcEEEe
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1196 HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFS----RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1271 (1294)
Q Consensus 1196 ~~f~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs----~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs 1271 (1294)
.++++.+++.++++.++++. + +.. ++||++|+++|.+. ..+.++.|...+ +..++++++.++++.+.++.
T Consensus 210 dri~~~~~~~~eai~~a~~~-~--i~t--slTTl~~~lpL~l~~~~~g~~~~~~fal~l-~~Gli~s~~~tl~~~~~~l~ 283 (292)
T PRK08578 210 TRVLKRRGTFDESIKRAMRT-G--ITM--TLTTIAAMAVLYIVSTIPQAEVLANIAAVL-IFGLLADLMNTWLLNAGILR 283 (292)
T ss_pred hHHHHccCCHHHHHHHHHHH-H--HHH--HHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88876656888999999843 3 443 36999999999764 456677664333 34567888889988888888
Q ss_pred hhCCC
Q 000767 1272 VFGPP 1276 (1294)
Q Consensus 1272 ~~gp~ 1276 (1294)
+++.+
T Consensus 284 ~~~~~ 288 (292)
T PRK08578 284 WYKTE 288 (292)
T ss_pred HHHhc
Confidence 87543
No 58
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.40 E-value=1.3e-11 Score=149.29 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeeh
Q 000767 1117 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1196 (1294)
Q Consensus 1117 ~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~ 1196 (1294)
+..+..+..+++++++|++++++.++ +.+++..+++++.++.++|+|.++|++||..++.++++++|++||++|.+..
T Consensus 330 ~~i~~~~~A~lig~ilV~i~m~~~yr--~~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~E 407 (498)
T PRK05812 330 DSIRAGLIAGLIGLALVLLFMILYYR--LFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFE 407 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeH
Confidence 45677888888999999999999888 4788888999999999999999999999999999999999999999999997
Q ss_pred hhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000767 1197 AFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1273 (1294)
Q Consensus 1197 ~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~ 1273 (1294)
+++++ +++..+++.++..++++||+.+. +||++++++|.+..+..++.|.. ++++.++++++.++++.|+++.++
T Consensus 408 rIreel~~g~~~~~Ai~~~~~~~~~~Il~s~-lTTlia~l~L~~~g~g~i~~fAi-tl~iGii~s~~~sl~vtp~l~~~~ 485 (498)
T PRK05812 408 RIREELREGRSLRSAIEAGFKRAFSTILDSN-ITTLIAAIILYALGTGPVKGFAV-TLGIGILTSMFTAITVTRALVNLL 485 (498)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77643 45788999999999999999986 69999999999866556776643 334457889999999999999965
Q ss_pred C
Q 000767 1274 G 1274 (1294)
Q Consensus 1274 g 1274 (1294)
-
T Consensus 486 ~ 486 (498)
T PRK05812 486 Y 486 (498)
T ss_pred H
Confidence 3
No 59
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.35 E-value=4.5e-11 Score=149.85 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeeh
Q 000767 1117 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1196 (1294)
Q Consensus 1117 ~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~ 1196 (1294)
+..+......+++++++++.+++.++. .+++..+++++.++.++|+|.++|++||..++.++++++|++||+++++..
T Consensus 275 ~~~~~~~~A~ii~~~lV~lfm~~~Y~~--~glia~iaL~~~v~~tl~~l~l~g~~Lnl~siaGlIL~IGm~VD~~Ivi~E 352 (758)
T PRK13023 275 DYASAAVLAALLAALVVGLFMVLSYGI--LGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYE 352 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHhccCcEEEee
Confidence 344555666666777777777666653 578888888999999999999999999999999999999999999999997
Q ss_pred hhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000767 1197 AFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1273 (1294)
Q Consensus 1197 ~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~ 1273 (1294)
+++++ +++.++++.++.+++++||+.+. +||++++++|.+.....++.|. .+++..++++++.++++.|+++.++
T Consensus 353 rireel~~G~~~~~Av~~g~~~~~~~Il~s~-lTTlia~lpL~~~g~g~ik~FA-itliiGi~~S~~~al~vt~~l~~~~ 430 (758)
T PRK13023 353 RVREDRRKGYSVVQAMESGFYRALSTIVDAN-LTTLIAALVLFLLGSGTVHGFA-LTVAIGIGTTLFTTLTFTRLLIAQW 430 (758)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77643 45889999999999999999996 7999999999988877777763 3444567889999999999999988
Q ss_pred CCC
Q 000767 1274 GPP 1276 (1294)
Q Consensus 1274 gp~ 1276 (1294)
...
T Consensus 431 ~~~ 433 (758)
T PRK13023 431 VRT 433 (758)
T ss_pred Hhh
Confidence 543
No 60
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.34 E-value=1.9e-11 Score=147.76 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccC
Q 000767 631 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 710 (1294)
Q Consensus 631 ~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD 710 (1294)
+..++++++++++|+++.+++ .++..++.++++++.++|+|.++|.++|+ .+..--.+++|++||
T Consensus 336 ~~A~lig~ilV~i~m~~~yr~--------------~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD 400 (498)
T PRK05812 336 LIAGLIGLALVLLFMILYYRL--------------FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVD 400 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEe
Confidence 445678888888888887763 27888899999999999999999999997 666666788999999
Q ss_pred ceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 711 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 789 (1294)
Q Consensus 711 ~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~pa 789 (1294)
+.+++.++++++ +.+.+..+++.++.++++.+++.|++|++++|+.+.+.....++.|++...+|++++++.++++.|+
T Consensus 401 ~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~ 480 (498)
T PRK05812 401 ANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRA 480 (498)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999974 5778999999999999999999999999999998887666789999999999999999999999999
Q ss_pred HHHHhhhh
Q 000767 790 LIVFDFLR 797 (1294)
Q Consensus 790 lL~l~~~r 797 (1294)
++.+..+|
T Consensus 481 l~~~~~~~ 488 (498)
T PRK05812 481 LVNLLYGR 488 (498)
T ss_pred HHHHHHhc
Confidence 99965543
No 61
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.33 E-value=6.1e-11 Score=150.41 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
.+..+....++++++++++++++++++. .++++.+.+++.++.++|+|.++|++||..++.++++++|++||.+|.+.
T Consensus 368 ~~~i~~~~~aliig~ilV~l~m~lfyr~--~glia~ial~~~vl~~l~~l~l~g~tLnl~~IaGiil~IGm~VD~~IVI~ 445 (855)
T PRK14726 368 ADSIAAGLVAGLIAAILVAALMIGFYGF--LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIY 445 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcceeHHHHHHHHHHHHhhhCceEEeH
Confidence 4556777788888888888888888773 78888999999999999999999999999999999999999999999999
Q ss_pred hhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000767 1196 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSV 1272 (1294)
Q Consensus 1196 ~~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~ 1272 (1294)
.+.+++ +++..+++.++.++++.||+.+. +||++++++|.+..+..++.|. .++...++++++.++++.|+++.+
T Consensus 446 ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~-lTTlia~lpL~~~g~~~ikgFA-vtl~igii~Sl~~Al~vtp~l~~~ 523 (855)
T PRK14726 446 ERIREEEKTGHSLIQALDRGFSRALATIVDAN-VTILIAAVILFFLGSGAVRGFA-VTLAVGILTTVFTAFTLTRSLVAV 523 (855)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654 45788999999999999999985 7999999999999988888774 334455789999999999999998
Q ss_pred hCCC
Q 000767 1273 FGPP 1276 (1294)
Q Consensus 1273 ~gp~ 1276 (1294)
+.++
T Consensus 524 ~l~~ 527 (855)
T PRK14726 524 WLRR 527 (855)
T ss_pred Hhcc
Confidence 7543
No 62
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.32 E-value=6.1e-11 Score=132.48 Aligned_cols=141 Identities=13% Similarity=0.256 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccC
Q 000767 631 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 710 (1294)
Q Consensus 631 ~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD 710 (1294)
...++++++++++|+.+.++ + ..++..++.++++++.++|++.++|+++|. .+.+-..+++|+.+|
T Consensus 101 ~~~~~la~i~i~l~l~~~f~-~------------r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vd 166 (246)
T TIGR00966 101 VLALLAALVLILIYITVRFE-W------------RFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSIN 166 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhcc
Confidence 34456677777777766543 2 237888899999999999999999999997 677777889999999
Q ss_pred ceEehhHHHHHh-c--CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000767 711 NMCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQIT 785 (1294)
Q Consensus 711 ~~~~l~~~~~~~-~--~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt 785 (1294)
|++++.+++++. + ++.+..+++.++.++..++++.|++|++++|+.+++.+-+.+|.|++...+|+++..+.++.
T Consensus 167 d~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 167 DTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred CeEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 2 37889999999999999999999999999999988888899999999999999999888765
No 63
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.29 E-value=4.4e-11 Score=141.74 Aligned_cols=147 Identities=14% Similarity=0.216 Sum_probs=129.7
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhccc
Q 000767 630 DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGV 709 (1294)
Q Consensus 630 d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGv 709 (1294)
-+..++++++++++|+++.+|+ .+++.++.++++++.++|+|+++|.++|+ .+.+--.+++|++|
T Consensus 250 ~~~a~~ig~ilV~l~~~~~yr~--------------~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~V 314 (397)
T TIGR01129 250 GIKAGLIGLVLVLVFMILYYRL--------------FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAV 314 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheee
Confidence 3445788888888998888763 27888889999999999999999999997 66676778899999
Q ss_pred CceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 710 DNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFV 788 (1294)
Q Consensus 710 D~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~p 788 (1294)
|+.+++.++++++ +++.+..+++.++.++++.+++.|++|++++|+.+.+...+.+|.|++...+|++++++.++++.+
T Consensus 315 D~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr 394 (397)
T TIGR01129 315 DANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTR 394 (397)
T ss_pred eceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 567889999999999999999999999999999888777678999999999999999999999987
Q ss_pred HHH
Q 000767 789 ALI 791 (1294)
Q Consensus 789 alL 791 (1294)
.++
T Consensus 395 ~~~ 397 (397)
T TIGR01129 395 LLL 397 (397)
T ss_pred hhC
Confidence 653
No 64
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.28 E-value=2e-10 Score=130.12 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeee
Q 000767 1116 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1195 (1294)
Q Consensus 1116 ~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~ 1195 (1294)
.++.+.....+++|+++|++.+.+.|+ ++.++.++++++..+++++|++.++|+++|..+++++++.+|++|+++|-+.
T Consensus 122 ~~~~~~~~~a~~~ali~I~lyl~~rF~-~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~ 200 (297)
T PRK13021 122 QELAEQGGLALLVAMLCILGYLSYRFE-WRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIA 200 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEe
Confidence 355678888899999999999988887 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1196 HAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1270 (1294)
Q Consensus 1196 ~~f~~~~-----~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlL 1270 (1294)
.++++.. .+.++++.+|..++.+|+++++ +||++|++||++......+.|-..++ .-+++|.+.++++-+.++
T Consensus 201 drire~~~~~~~~~~~e~i~~ai~~~lrr~l~Ts-lTt~l~llpL~l~G~~~~~~fA~~li-~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 201 DRIRELLIAKPKLAIQEINNQAIVATFSRTMVTS-GTTLMTVGALWIMGGGPLEGFSIAMF-IGILTGTFSSISVGTSLP 278 (297)
T ss_pred eHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 8777432 3678999999999999999996 79999999999987777777644443 446788888888877777
Q ss_pred hhhCC
Q 000767 1271 SVFGP 1275 (1294)
Q Consensus 1271 s~~gp 1275 (1294)
-+++.
T Consensus 279 ~~~~~ 283 (297)
T PRK13021 279 ELLGL 283 (297)
T ss_pred HHHcc
Confidence 66653
No 65
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.26 E-value=3.4e-10 Score=129.06 Aligned_cols=166 Identities=10% Similarity=0.162 Sum_probs=131.0
Q ss_pred EEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 000767 610 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 689 (1294)
Q Consensus 610 ~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~G 689 (1294)
+...-| +.+.+|..+. -...++++.++|++|+.+.+++ +..++..+++++..++.++|+++++|
T Consensus 120 ~~~~Vg-p~~g~~~~~~---~~~al~~alilI~i~l~l~F~s------------~~~~l~~~lal~~dv~~tlg~~~l~g 183 (292)
T PRK08578 120 SEKQIG-PTFGSQFQEQ---ALKAVGFAFIGMAVVVFLIFRT------------PVPSLAVILSAFSDIIIALALMNLFG 183 (292)
T ss_pred eeeeeC-cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444 3444555442 3345678888898998887764 34577788889999999999999999
Q ss_pred cccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccC----CchHH
Q 000767 690 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI----PMPAC 765 (1294)
Q Consensus 690 i~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s----~~p~v 765 (1294)
+++|. .+...-.+++|+++||++++.+|+++.. .+.++++.+++++. +.+++|++++|+.+.+. +.+.+
T Consensus 184 ~~ln~-~~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~----i~tslTTl~~~lpL~l~~~~~g~~~~ 256 (292)
T PRK08578 184 IELSL-ATVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG----ITMTLTTIAAMAVLYIVSTIPQAEVL 256 (292)
T ss_pred ccccH-HHHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHH
Confidence 99997 4444445779999999999999998743 57889999988543 45679999999977543 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000767 766 RVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 798 (1294)
Q Consensus 766 r~F~i~aa~av~~~~l~~lt~~palL~l~~~r~ 798 (1294)
|.|++...+|++++++.++++.++++.+..+|+
T Consensus 257 ~~fal~l~~Gli~s~~~tl~~~~~~l~~~~~~~ 289 (292)
T PRK08578 257 ANIAAVLIFGLLADLMNTWLLNAGILRWYKTEG 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999887664
No 66
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.21 E-value=1.8e-10 Score=139.55 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhh-ccccchhhHHHHHHHhhhccc
Q 000767 631 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGV 709 (1294)
Q Consensus 631 ~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~-Gi~~~~i~~~vipflvlgIGv 709 (1294)
+..++++++++++|+.+.+|+. |+...+.+++.++.++|+|+++ |.++|+ +...--.+.+|+.|
T Consensus 443 l~A~iig~vlV~lFm~~~Yr~~--------------glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaV 507 (604)
T PRK12933 443 FAALALGMGITLLFMALWYRRL--------------GWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAV 507 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhc
Confidence 3345667777777776555432 7778888999999999999998 999997 56566667889999
Q ss_pred CceEehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 710 DNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFV 788 (1294)
Q Consensus 710 D~~~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~p 788 (1294)
|+.+++.+|.+++ +++.+..+++..+.+++..+|+.+++|++++|+.+.+.+-.++|.|++...+|++.+++..+++.|
T Consensus 508 DanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr 587 (604)
T PRK12933 508 DTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASR 587 (604)
T ss_pred cCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 567889999999999999999999999999999887666667999999999999999999999999
Q ss_pred HHHHHhhhhc
Q 000767 789 ALIVFDFLRA 798 (1294)
Q Consensus 789 alL~l~~~r~ 798 (1294)
+++.+..++.
T Consensus 588 ~l~~~~~~~~ 597 (604)
T PRK12933 588 ALINLVYGRD 597 (604)
T ss_pred HHHHHHhccc
Confidence 9998865543
No 67
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.21 E-value=4.3e-10 Score=136.34 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHhhhheeecceeee
Q 000767 1118 IWRTALINLAIAIGAVFVVCLITTCSF--WSSAIILLVLTMIVVDLMGVMAIL-KIQLNAVSVVNLVMAVGIAVEFCVHI 1194 (1294)
Q Consensus 1118 i~~~~~~~l~~al~~v~iv~~l~~~s~--~~~lii~l~i~~~~v~~~G~M~l~-gi~Ln~vslv~lvi~iGi~VD~~ihi 1194 (1294)
+-.+.+.....|+++.++++++++..+ +.++++.+.+++.++.++|+|.++ |.+||..++.++++++|++||.+|.+
T Consensus 434 LG~~~i~~gl~A~iig~vlV~lFm~~~Yr~~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI 513 (604)
T PRK12933 434 LGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLI 513 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEE
Confidence 334455555555555555555444433 678888899999999999999998 99999999999999999999999999
Q ss_pred ehhhhc---cCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1195 THAFSV---SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1271 (1294)
Q Consensus 1195 ~~~f~~---~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs 1271 (1294)
..+.++ .+++..+++..+..++..+|+.+. +||++.+++|.+..+..++-|.+.+ .+.++.+++.++++.|+++.
T Consensus 514 ~ERIrEel~~G~s~~~Ai~~G~~~a~~~Ildan-lTTlia~lpL~~~Ggg~ikgFAvTL-~iGIl~S~ftAi~vtr~l~~ 591 (604)
T PRK12933 514 FERIKDKLKEGRSFAQAIDTGFDSAFSTIFDAN-FTTMITAVVLYSIGNGPIQGFALTL-GLGLLTSMFTGIFASRALIN 591 (604)
T ss_pred ehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 976654 345788999999999999999885 7999999999887777788774443 44578899999999999998
Q ss_pred hhCCC
Q 000767 1272 VFGPP 1276 (1294)
Q Consensus 1272 ~~gp~ 1276 (1294)
++-.+
T Consensus 592 ~~~~~ 596 (604)
T PRK12933 592 LVYGR 596 (604)
T ss_pred HHhcc
Confidence 87443
No 68
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.18 E-value=9e-10 Score=140.18 Aligned_cols=151 Identities=12% Similarity=0.215 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhcc-
Q 000767 1123 LINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS- 1201 (1294)
Q Consensus 1123 ~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~- 1201 (1294)
...++++++++++.+++.++ ..+++..+.+++.++.++|+|.++|++||..++.++++++|++||.+|.+..+.+++
T Consensus 912 ilA~lIglaLVlIFMlL~YR--f~GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREEL 989 (1403)
T PRK12911 912 IISVCLGLAVLIVLMSVYYR--FGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEY 989 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHHH
Confidence 33344444443333333332 124445555556667778999999999999999999999999999999999776654
Q ss_pred --CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1202 --SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1202 --~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
+++..+++.++..++.+||+.+. +||++|+++|.+..+..++.|... +++.++++++.++++.|+++.++..+.
T Consensus 990 r~Gksl~eAI~~G~~~afs~ILdTn-LTTLIA~lPLf~fGtG~vkgFAvT-LiIGII~SmftALfVtP~Ll~l~l~~~ 1065 (1403)
T PRK12911 990 LLSRSLSESVEAGYKKAFSAIFDSN-LTTILASALLLMLDTGPIKGFALT-LIIGIFSSMFTALFMTKFFFMIWMNKT 1065 (1403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999996 799999999965555456666433 445578899999999999998886543
No 69
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.12 E-value=1.8e-09 Score=115.27 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeeccee
Q 000767 1113 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCV 1192 (1294)
Q Consensus 1113 eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~i 1192 (1294)
..=.+..+..+..++++++++++.+++.|+ ++.++..++.++.-++.++|+|.++|+++|..++..+++.+|.+||.++
T Consensus 24 ~~g~~~~~~~~~a~~~al~~i~iyi~~rf~-~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~I 102 (189)
T PF02355_consen 24 TLGSDLLKSALIALIIALIAILIYIFLRFR-WRFALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDNI 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcce
Confidence 344566788888999999999998888887 4567777777777788899999999999999999999999999999999
Q ss_pred eeehhhhcc-----CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1193 HITHAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLP 1267 (1294)
Q Consensus 1193 hi~~~f~~~-----~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLP 1267 (1294)
-+..|.+++ +++.++++.++..++.+..+.+. +||++.+++|.+......+.|.+.+. ..+++|++.++++-+
T Consensus 103 VifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~~l~-iGvi~~~~ss~~ia~ 180 (189)
T PF02355_consen 103 VIFDRIREELRASRGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFALTLI-IGVIIGTYSSLFIAR 180 (189)
T ss_dssp HHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred eehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999777765 34778999999999999888775 68888888888888777888754544 457889999999999
Q ss_pred HHHhhhC
Q 000767 1268 VVLSVFG 1274 (1294)
Q Consensus 1268 vlLs~~g 1274 (1294)
.++.++.
T Consensus 181 ~l~~~l~ 187 (189)
T PF02355_consen 181 PLLYWLV 187 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 70
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=99.12 E-value=3.9e-09 Score=125.38 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhc
Q 000767 1121 TALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV 1200 (1294)
Q Consensus 1121 ~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~ 1200 (1294)
..+...++++++|++++++.++.+...+.+.+++++.++.++|+|.++|.+||..++.++++++|++||..|.+..+.++
T Consensus 262 ~~l~a~ii~~ilVl~~m~~~yr~~~~i~~iaL~~~~~v~~~lg~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~~ 341 (417)
T PRK08343 262 GSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLH 341 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHHH
Confidence 44556666667777777777776665555555556667788999999999999999999999999999999999966654
Q ss_pred cCC-CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 1201 SSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1270 (1294)
Q Consensus 1201 ~~~-~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlL 1270 (1294)
+.+ +.++++..+++...++|+.+. +||++|++||.+.....++-| +.++++|++.+.++.-.++
T Consensus 342 ~~~~~~~~ai~~g~~~a~~~Il~t~-lTTiia~lpL~~~g~g~ikgf-----AitliiGii~s~~iTrp~~ 406 (417)
T PRK08343 342 EGKVPSRKVFLSRIKRAFFIIFAAA-ATTIAAMSPLAVMGLGDLKGF-----AITTILGVLIGVLITRPAY 406 (417)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccch-----HHHHHHHHHHHHHHHHHHH
Confidence 443 678889999999999999986 799999999998755444433 3445566666666554443
No 71
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.11 E-value=3.2e-09 Score=113.33 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=132.5
Q ss_pred hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhh
Q 000767 617 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 696 (1294)
Q Consensus 617 ~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~ 696 (1294)
+++.+|..+. -+..++++++++++|+.+.++ ...++.+++..+..++.++|++.++|+++++ .
T Consensus 23 p~~g~~~~~~---~~~a~~~al~~i~iyi~~rf~-------------~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~ 85 (189)
T PF02355_consen 23 PTLGSDLLKS---ALIALIIALIAILIYIFLRFR-------------WRFALAAIIALIHDVLITLGIFSLFGIELTL-P 85 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-H
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4455555442 344567888888888877653 2247778888888899999999999999997 5
Q ss_pred HHHHHHHhhhcccCceEehhHHHHHh---cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 000767 697 MEVIPFLVLAVGVDNMCILVHAVKRQ---QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 773 (1294)
Q Consensus 697 ~~vipflvlgIGvD~~~~l~~~~~~~---~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa 773 (1294)
....-.+++|.+||+.+++.+|.+|+ .++.+.++++.++++++....+.|++|+.++.+.+.+..-..++.|++...
T Consensus 86 ~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~ 165 (189)
T PF02355_consen 86 SIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLI 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 55666788999999999999999986 257889999999999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 000767 774 LAVLLDFLLQITAFVALIVFDFL 796 (1294)
Q Consensus 774 ~av~~~~l~~lt~~palL~l~~~ 796 (1294)
+|++.+.+.++.+-++++.+..+
T Consensus 166 iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 166 IGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987764
No 72
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.10 E-value=4.1e-09 Score=129.43 Aligned_cols=192 Identities=18% Similarity=0.254 Sum_probs=139.1
Q ss_pred chhHHHHHHHH-HHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 000767 1076 RQIDYVNSMRA-AREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVL 1154 (1294)
Q Consensus 1076 ~~~d~i~al~~-~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i 1154 (1294)
+..+.+++.++ .+++.+.++ .|+++.++ |.-.+-.+...++..+++.-..++|.++++++++++|+++++++++
T Consensus 294 nt~~V~~aV~~kl~elk~~LP--~gVki~~~---ydRs~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~RsAli~~~~l 368 (1027)
T COG3696 294 NTREVIAAVKEKLEELKKSLP--EGVKIVTT---YDRSELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRSALIVIISL 368 (1027)
T ss_pred ChHHHHHHHHHHHHHHHhhCC--CCcEEEEE---eeHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455555544 233444432 36676443 2222223445566677778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeeh-hh--hcc----CCCHHHHHHHHHHHhhHHHHHHHHHH
Q 000767 1155 TMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH-AF--SVS----SGDKNQRMKEALGTMGASVFSGITLT 1227 (1294)
Q Consensus 1155 ~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~-~f--~~~----~~~~~~ai~~al~~~g~~V~~~~~lT 1227 (1294)
+++++..+-+|..+|++.|.+|+-++++++|+.||-++.++. .| +++ ...+-+.+.+|.+++++|+++|. +-
T Consensus 369 PLS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~-lI 447 (1027)
T COG3696 369 PLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGL-LI 447 (1027)
T ss_pred HHHHHHHHHHHHHcCCcchhhcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhh-hh
Confidence 999999999999999999999999999999999999999982 22 221 23566889999999999999985 34
Q ss_pred HHHHHHhhh-cc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000767 1228 KLVGVIVLC-FS--RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1228 t~~G~~~L~-fs--~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
..+-|+|+. |. ..++|.-..|... ..++.+++.++++.|++.+++=
T Consensus 448 I~vvf~PIFtL~GvEGklF~Pma~t~~-~al~~a~llsiT~iPal~~~~i 496 (1027)
T COG3696 448 ITVVFLPIFTLTGVEGKLFAPLAFTKT-YALLAALLLSITFIPALMAYLI 496 (1027)
T ss_pred heeehhhhheeccccccccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 444555543 22 3455555433332 3357788999999999999884
No 73
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.08 E-value=5e-09 Score=118.90 Aligned_cols=169 Identities=13% Similarity=0.196 Sum_probs=140.2
Q ss_pred EEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhc
Q 000767 610 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 689 (1294)
Q Consensus 610 ~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~G 689 (1294)
+...-| +++.+|+.+. ....+++++++|++|+.+.++ + ..++..++.++..++.++|++.++|
T Consensus 112 ~~~~Vg-p~~g~~~~~~---~~~a~~~ali~I~lyl~~rF~-~------------~~~l~al~al~~dv~~~l~~l~l~g 174 (297)
T PRK13021 112 NSSIVG-PQVGQELAEQ---GGLALLVAMLCILGYLSYRFE-W------------RLASGALFALVHDVIFVLAFFALTQ 174 (297)
T ss_pred EEeEEC-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334433 5667777654 345567888888888877654 3 3467788899999999999999999
Q ss_pred cccchhhHHHHHHHhhhcccCceEehhHHHHHh---cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHH
Q 000767 690 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ---QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 766 (1294)
Q Consensus 690 i~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~---~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr 766 (1294)
.+++. ...+--..++|+.++|.+++.+|+++. .++.+.++++.++..+.-.++++|++|++++.+.+++..-+.+|
T Consensus 175 ~~l~~-~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G~~~~~ 253 (297)
T PRK13021 175 MEFNL-TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLE 253 (297)
T ss_pred CCccH-HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 99996 555555678999999999999999974 35678999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000767 767 VFSMFAALAVLLDFLLQITAFVALIVFDFL 796 (1294)
Q Consensus 767 ~F~i~aa~av~~~~l~~lt~~palL~l~~~ 796 (1294)
.|++...+|++...+.++.+-++++.++..
T Consensus 254 ~fA~~li~Gli~gt~sslfva~pl~~~~~~ 283 (297)
T PRK13021 254 GFSIAMFIGILTGTFSSISVGTSLPELLGL 283 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998888876643
No 74
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=98.93 E-value=3.4e-08 Score=129.97 Aligned_cols=192 Identities=17% Similarity=0.225 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhhcccCceeeecceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 000767 1084 MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1163 (1294)
Q Consensus 1084 l~~~r~ia~~~~~~~~~~v~~~s~~~v~~eqy~~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G 1163 (1294)
.+..|.+.++.....+.+++..|....-.++.....++......+++.++++++++.++|+..+++.++++.+.+....|
T Consensus 148 ~~~v~~~v~~~~~~~~~~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s~i~a~lpL~t~~~s~~~a~~ 227 (937)
T COG2409 148 VEAVRSIVRQLPAPDGLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRSVITAFLPLITVGLSLLVAQG 227 (937)
T ss_pred HHHHHHHhcccCCCCceEEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665444467777788777666666666677777788899999999999999999999999888877776666
Q ss_pred HHHHh----ccccchH-HHHHHHhhhheeecceeeeehhhhcc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 000767 1164 VMAIL----KIQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVL 1235 (1294)
Q Consensus 1164 ~M~l~----gi~Ln~v-slv~lvi~iGi~VD~~ihi~~~f~~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L 1235 (1294)
+..++ +.+++.. ..+...+.+|+++||++.++.+|+++ +.++++++..+++..|..|..++ .|.++++..|
T Consensus 228 iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg-~tV~~a~~~l 306 (937)
T COG2409 228 IVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSG-LTVAIALLGL 306 (937)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhh-hHHHHHHHHH
Confidence 55533 3434333 34556678899999999999888854 34899999999999999999887 5889999999
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000767 1236 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1277 (1294)
Q Consensus 1236 ~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~ 1277 (1294)
.|++.++++.. .-.....+.++.+.++.++|++++++|.+.
T Consensus 307 ~~a~~~~~~s~-g~~~ai~V~va~l~slTllPAll~llg~~~ 347 (937)
T COG2409 307 SFARLPFLKTL-GIAAAIGVAVAVLAALTLLPALLALLGRRG 347 (937)
T ss_pred Hhcccchhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999988876 223445577788999999999999999876
No 75
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.2e-07 Score=105.27 Aligned_cols=175 Identities=14% Similarity=0.257 Sum_probs=141.1
Q ss_pred eEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 000767 609 LTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 688 (1294)
Q Consensus 609 ~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~ 688 (1294)
-++.+-| +.+.+|+.+. .+..++++++.|++|+.+-++ +..++.+++..+-=++.++|+|+++
T Consensus 119 ~~~~~Vg-p~vg~eL~~~---~~~Al~~alv~I~iYV~~RFe-------------~~~a~aaI~al~hDvii~~g~~slf 181 (305)
T COG0341 119 RSVEFVG-PTVGKELARQ---GLLALLLALVGILIYVFFRFE-------------WRFALAAILALLHDVIITLGFFSLF 181 (305)
T ss_pred eeeeEEC-cchHHHHHHH---HHHHHHHHHHHHHHhhheeee-------------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555 4577788764 445567888888888776432 3348888999999999999999999
Q ss_pred ccccchhhHHHHHHHhhhcccCceEehhHHHHHh---cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHH
Q 000767 689 GVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ---QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 765 (1294)
Q Consensus 689 Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~---~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~v 765 (1294)
|+++|+ .+...-..++|=.+||.+++.+|.||. .+..+..+.+..++..+-.-...|++|+.++.+.+.+-.-+.+
T Consensus 182 giE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fgg~~l 260 (305)
T COG0341 182 GIEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSL 260 (305)
T ss_pred heeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 999997 444444567899999999999999984 2466777888888888888888999999988777766666999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 000767 766 RVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDK 801 (1294)
Q Consensus 766 r~F~i~aa~av~~~~l~~lt~~palL~l~~~r~~~~ 801 (1294)
++|++..-+|++.+..-++.+-++++.+..+|++..
T Consensus 261 ~~fa~~llvGii~gtySSifiA~pll~~~~~~~~~~ 296 (305)
T COG0341 261 KDFALALLVGIIAGTYSSIFIAAPLLLLLGKRREKK 296 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhc
Confidence 999999999999999999999999999988776543
No 76
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.81 E-value=1.8e-09 Score=134.48 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=141.7
Q ss_pred CCCeEEEEccchhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 685 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~ 685 (1294)
.+.+++...+-..-++++++....|.....++-..|+..+++.. +.+...+.++..+.+++..++++.
T Consensus 303 ~~kv~~~~~~~~~~~~~~~~~~l~ds~la~l~~~~v~~~v~i~t------------~s~f~tf~~~~~i~ls~~~a~f~y 370 (999)
T KOG3664|consen 303 NEKVRVVGIDLDLKNELFNELILTDSLLASLSALLVMASVWIYT------------GSAFITFMSIVAICLSLGVALFFY 370 (999)
T ss_pred ccceeeeehhhhhHHHHHHHHhccchHHHHhccccceeEEEEec------------CcHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566666666666788888888898877666555544433321 236678888999999999888888
Q ss_pred hh-hccccchhhHHHHHHHhhhcccCceEehhHHHHHhc-------------------CCCCHHHHHHHHHhhhhhHHHH
Q 000767 686 SA-IGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-------------------LELPLETRISNALVEVGPSITL 745 (1294)
Q Consensus 686 ~~-~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~-------------------~~~~~~~ai~~al~~~g~si~~ 745 (1294)
.. +|+.+-.++..+.-++++|||.||.|++...|+|.. ...-.+......+.+...+|++
T Consensus 371 ~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l~~~~~ll~~~~~l~~~h~~~smfv 450 (999)
T KOG3664|consen 371 AVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLELSDHTELLENVFALTLRHASFSMFV 450 (999)
T ss_pred eeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccccccchhHHHHHHhhhhhhhhHHHHH
Confidence 54 567776667777778899999999999999994411 0112445667778889999999
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000767 746 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 798 (1294)
Q Consensus 746 tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL~l~~~r~ 798 (1294)
|+++++++|.....++.+.+|-|+++|+..+.+++..+++++||..++..++.
T Consensus 451 t~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~~ 503 (999)
T KOG3664|consen 451 TSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRLF 503 (999)
T ss_pred HHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999877766543
No 77
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.78 E-value=2.5e-07 Score=110.22 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=121.8
Q ss_pred CCCeEEEEccchhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHH
Q 000767 606 SKNLTLAFSSESSIEEELKREST-ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 684 (1294)
Q Consensus 606 ~~~~~v~~~g~~s~~~el~~~~~-~d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl 684 (1294)
|.++++...+. +...+.+... ..+...+++++++++|+++.+|.. .+.+...++.++.++..+|+
T Consensus 240 P~~~~i~~~~~--v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~------------~~i~~iaL~~~~~v~~~lg~ 305 (417)
T PRK08343 240 PVKLDIEGSGS--VSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREP------------RIALPMVITSLSEVIIILGF 305 (417)
T ss_pred CCCeEEEEccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 44677766554 3333333322 223345666666667766665432 22222223345667888999
Q ss_pred HhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchH
Q 000767 685 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 764 (1294)
Q Consensus 685 ~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~ 764 (1294)
+.++|.++|+ ...+--.+++|++||+.++++++.+++.. .+.++++..+++++..+|+.|++|++++|+.+.+.....
T Consensus 306 l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~ 383 (417)
T PRK08343 306 AALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGD 383 (417)
T ss_pred HHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999997 56677778899999999999988766432 267888999999999999999999999999887776677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 765 CRVFSMFAALAVLLDFLLQITAFVALI 791 (1294)
Q Consensus 765 vr~F~i~aa~av~~~~l~~lt~~palL 791 (1294)
+|.|++...+|++++.+++=-++--++
T Consensus 384 ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 384 LKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998666655554443
No 78
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=98.71 E-value=1.4e-07 Score=97.63 Aligned_cols=129 Identities=23% Similarity=0.417 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHhhhheeecceeeeehhhhccCC--CHHHHHHHHHHHhhHH
Q 000767 1143 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSV-VNLVMAVGIAVEFCVHITHAFSVSSG--DKNQRMKEALGTMGAS 1219 (1294)
Q Consensus 1143 s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vsl-v~lvi~iGi~VD~~ihi~~~f~~~~~--~~~~ai~~al~~~g~~ 1219 (1294)
+++.++..++.+.++++..+|+.+++|++++.+.. +...+.+|+++|+..++++++.+... +.++|+.+|+++.|.+
T Consensus 5 ~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~~G~s 84 (153)
T PF12349_consen 5 RFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSRVGPS 84 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhHH
Confidence 45667777788888888889999999999999886 66668889999999999999986653 5689999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhC
Q 000767 1220 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA-LVLLGFLHGLVFLPVVLSVFG 1274 (1294)
Q Consensus 1220 V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~-~v~~g~l~~LvlLPvlLs~~g 1274 (1294)
++.+. +|+++++...++++.+..+.| .++++ .+++.++..+++.|++|++--
T Consensus 85 i~~t~-l~~~~af~~~~~~~~~~l~~F--c~faa~~l~~d~~l~~tff~avLsld~ 137 (153)
T PF12349_consen 85 ILLTS-LTEIVAFLIGAFSPVPALREF--CLFAALALLFDFLLQLTFFPAVLSLDL 137 (153)
T ss_pred HHHHH-HHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 799999998889998888876 44443 467889999999999999764
No 79
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.70 E-value=2.1e-07 Score=112.98 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCce
Q 000767 633 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 712 (1294)
Q Consensus 633 ~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~ 712 (1294)
.-+++++++++|+++.+|. .|+++.+...+.++..+|+++++|.++++ ....--.+.+|++||.-
T Consensus 348 Agl~g~~~V~vfm~~~Yr~--------------~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaN 412 (506)
T COG0342 348 AGLIGLALVAVFMLLYYRL--------------AGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDAN 412 (506)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhccccc
Confidence 3466777777777666542 37888888888999999999999999998 55566678889999999
Q ss_pred EehhHHHHHh-cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 713 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 791 (1294)
Q Consensus 713 ~~l~~~~~~~-~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~palL 791 (1294)
+++.+|.+++ +.+.+...++..+++++..+|+=+.+||+++-+++.....-++|-|++..++|++++++..+++.=.++
T Consensus 413 VlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~ 492 (506)
T COG0342 413 VLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLL 492 (506)
T ss_pred EEeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999985 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcc
Q 000767 792 VFDFLRAE 799 (1294)
Q Consensus 792 ~l~~~r~~ 799 (1294)
.+..++..
T Consensus 493 ~~~~~~~~ 500 (506)
T COG0342 493 NLLVGRRR 500 (506)
T ss_pred HHHhcccc
Confidence 88776543
No 80
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.62 E-value=1e-06 Score=99.97 Aligned_cols=158 Identities=13% Similarity=0.227 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeeh
Q 000767 1117 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1196 (1294)
Q Consensus 1117 ~i~~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~ 1196 (1294)
++.+..+..+++|+++|++...+-|+... ++-.+++..-=++.++|+|.++|+++|..++..+.+.+|.||+++|.+..
T Consensus 131 eL~~~~~~Al~~alv~I~iYV~~RFe~~~-a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvfD 209 (305)
T COG0341 131 ELARQGLLALLLALVGILIYVFFRFEWRF-ALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVFD 209 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeehHH-HHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHeeeccCCeEEEEh
Confidence 55677788888888888887777775544 77777777777788899999999999999999999999999999999986
Q ss_pred hhhccC-----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000767 1197 AFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1271 (1294)
Q Consensus 1197 ~f~~~~-----~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs 1271 (1294)
|-++.. .+..+.+..|+..+..-.+.++ +||++.+++|.+-.....+.|-..+++ .++.|...+.++-+.++.
T Consensus 210 RIREn~r~~~~~~~~~iin~si~qTlsRti~Ts-~ttll~~~~l~~fgg~~l~~fa~~llv-Gii~gtySSifiA~pll~ 287 (305)
T COG0341 210 RIRENLRKYRRETLREIINTSINQTLTRTINTS-VTTLLVVVALLLFGGGSLKDFALALLV-GIIAGTYSSIFIAAPLLL 287 (305)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCchHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH
Confidence 665532 2455888888888877766665 578888777776666777777544443 467888888888888888
Q ss_pred hhCCCC
Q 000767 1272 VFGPPS 1277 (1294)
Q Consensus 1272 ~~gp~~ 1277 (1294)
+++.+.
T Consensus 288 ~~~~~~ 293 (305)
T COG0341 288 LLGKRR 293 (305)
T ss_pred HHHHhH
Confidence 887543
No 81
>COG4258 Predicted exporter [General function prediction only]
Probab=98.45 E-value=8.3e-07 Score=104.30 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=105.0
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhccc
Q 000767 630 DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGV 709 (1294)
Q Consensus 630 d~~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGv 709 (1294)
+......+...+++.+.++.+.||. ++..++++.+++.+.+..+.+.|+++|+ ...+.-.|++|+|+
T Consensus 647 ~la~~laga~alvl~la~a~rgwRr------------glrvllP~v~a~~~~~A~~a~aGvplnL-fhllal~LvlgvG~ 713 (788)
T COG4258 647 VLAGLLAGALALVLCLAVARRGWRR------------GLRVLLPSVLALGCGLAVLAMAGVPLNL-FHLLALVLVLGVGI 713 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHccc
Confidence 3333444444445555666666542 7888899999999999999999999997 57777789999999
Q ss_pred CceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 710 DNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 789 (1294)
Q Consensus 710 D~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~av~~~~l~~lt~~pa 789 (1294)
||+..+-++= .+..|-.. +-.++.++++||.++|..+.+|.+|.++.||+..+.|++++|++.....|.
T Consensus 714 nYalFfs~~~------~~~ae~lt-----tl~alala~ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlApL~mp~ 782 (788)
T COG4258 714 NYALFFSNAG------DPRAEPLT-----TLLALALAMLTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLAPLAMPD 782 (788)
T ss_pred chhhhhhccc------CCCCchHH-----HHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 9998874432 11112121 456799999999999999999999999999999999999999888766654
No 82
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.43 E-value=4.9e-06 Score=101.22 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhh
Q 000767 1120 RTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS 1199 (1294)
Q Consensus 1120 ~~~~~~l~~al~~v~iv~~l~~~s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~ 1199 (1294)
+..+....+++++|++++++.++ ..+++..+.+..-.+.++|+|.++|.+|+.-.+-+++++||++||--+.|..|.+
T Consensus 343 ~~gi~Agl~g~~~V~vfm~~~Yr--~~Gvia~ial~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ERIr 420 (506)
T COG0342 343 KAGLIAGLIGLALVAVFMLLYYR--LAGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIR 420 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHhhhhcccccEEeeHHHH
Confidence 55666677888888888888887 4577777777777888899999999999999999999999999999999998887
Q ss_pred cc---CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000767 1200 VS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1276 (1294)
Q Consensus 1200 ~~---~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~ 1276 (1294)
++ +++...++....++..+.|+-+. +||+++.++|.+-..-.++-|.+.+. +.++++++.++++.=.++.++-+.
T Consensus 421 EElr~G~s~~~ai~~G~~rAf~tI~DsN-~TTlia~~~L~~~GtG~vKGFA~Tl~-lGi~~smfta~~~tr~l~~~~~~~ 498 (506)
T COG0342 421 EELRNGKSVLSAIDAGFKRAFSTILDSN-ATTLIAAAILFALGTGPVKGFAVTLI-LGILTSMFTAIPVTRLLLNLLVGR 498 (506)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhccCCchHHHHHHH-HHHHHHhhhhHHHHHHHHHHHhcc
Confidence 65 34778899999999999999886 69999988887666666777754544 457888999988887777777544
No 83
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=98.17 E-value=8.8e-06 Score=98.83 Aligned_cols=124 Identities=19% Similarity=0.304 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhhhheeecceeeeehhhhccCCCHHHHHHHHHHHhhHHHHHHHH
Q 000767 1147 SAIILLVLTMIVVDLMGVMAILKIQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGIT 1225 (1294)
Q Consensus 1147 ~lii~l~i~~~~v~~~G~M~l~gi~Ln~v-slv~lvi~iGi~VD~~ihi~~~f~~~~~~~~~ai~~al~~~g~~V~~~~~ 1225 (1294)
++.-++.+.++.+..+|+-.|+||.+|+. |-+.--+++|++||+.--++|+|.+..+. ++++.+-++++|.+|+.++
T Consensus 444 glaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~-~~~~~~~lk~tG~Svl~ts- 521 (1143)
T KOG1935|consen 444 GLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL-HEEMGELLKETGMSVLLTS- 521 (1143)
T ss_pred hhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh-HHHHHHHHHHhCcchhHHH-
Confidence 44444555666677789999999999987 56888899999999999889999876544 7999999999999999998
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000767 1226 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1273 (1294)
Q Consensus 1226 lTt~~G~~~L~fs~~~~~~~f~f~~~~~~v~~g~l~~LvlLPvlLs~~ 1273 (1294)
+.++++|+.-++-+.+..+.|= .--++++.+.++..|++.|+++|+=
T Consensus 522 inni~aF~~aallPIPALrsFc-lQaaIvl~fnfia~llifPAiisiD 568 (1143)
T KOG1935|consen 522 INNILAFLMAALLPIPALRSFC-LQAAIVLTFNFIAVLLIFPAIISID 568 (1143)
T ss_pred hhhHHHHHHHhhcCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999873 2234556778899999999999975
No 84
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=97.63 E-value=0.00041 Score=87.15 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhheeecceeeeehhhhcc--CCCHHHHHHHHHHHhhHHH
Q 000767 1143 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS--SGDKNQRMKEALGTMGASV 1220 (1294)
Q Consensus 1143 s~~~~lii~l~i~~~~v~~~G~M~l~gi~Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~--~~~~~~ai~~al~~~g~~V 1220 (1294)
.++.|+.-++++.++++..+|++.++|++++.+.-+.--+.++++||+.-.+++..... ..+.++|+.+++.++|.+|
T Consensus 89 K~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t~~~~~v~eRIa~~l~~vGpSI 168 (886)
T TIGR00920 89 KYILGIAGLFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTI 168 (886)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhccCCCCCHHHHHHHHHHHhccce
Confidence 45667777888899999999999999999999877888888899999988776542121 2367899999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCC
Q 000767 1221 FSGITLTKLVGVIVLCFSRTEVFVVYYFQMYL-ALVLLGFLHGLVFLPVVLSVFGP 1275 (1294)
Q Consensus 1221 ~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~-~~v~~g~l~~LvlLPvlLs~~gp 1275 (1294)
+.++ +|-.+.|.+-+++..+-.+.| .++. +.+++.++.=+.|+|++|++.+.
T Consensus 169 tlts-lte~l~F~vGtls~mPAV~~F--c~ya~vAVl~nyllQmTfF~A~LsL~~~ 221 (886)
T TIGR00920 169 TLDT-VVETLVIGVGTMSGVRRLEVL--CCFGCMSVLANYFVFMTFFPACLSLVLE 221 (886)
T ss_pred eHHH-HHHHHHHHHhccCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 688889999999998888876 4443 34678889999999999999874
No 85
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=95.40 E-value=0.0042 Score=65.55 Aligned_cols=96 Identities=27% Similarity=0.547 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCCCCCCHHHHHHHHHHHH-hhhhh-ccCC----hhHHhhHHhhccccccCCCCCcceEEEeecccCCCc
Q 000767 85 SKVQSLCPTITGNVCCTEDQFDTLRTQVQ-QAIPF-LVGC----PACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNL 158 (1294)
Q Consensus 85 ~~l~~~Cp~~~~~~CC~~~Q~~~l~~~~~-~~~~~-~~~C----paC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~ 158 (1294)
..|...|..+....||+.++.+.+..... .+..+ ..+| |.|.+=|.++.|-+-|||++..+ .. . ..+.
T Consensus 16 ~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~-~~--~---~~~~ 89 (167)
T PF03024_consen 16 PDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHW-QA--E---DRKT 89 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccccc-cc--C---CcCC
Confidence 34666899998899999999999998877 33332 2233 79999999999999999999999 21 1 1122
Q ss_pred eEEEEEEEEccccchHHhhccccCcccCCC
Q 000767 159 TVDGIDYYITDTFGQGLYESCKDVKFGTMN 188 (1294)
Q Consensus 159 ~v~~~~~~v~~~~~~~~y~SCk~v~~~~~~ 188 (1294)
.+..+- |=++|=+..|+.||+..+...+
T Consensus 90 ~~~~~P--LC~~~Cd~wf~aCk~d~tc~~~ 117 (167)
T PF03024_consen 90 RIRGVP--LCASFCDDWFEACKDDYTCGSN 117 (167)
T ss_dssp ------------------------------
T ss_pred ccCCCC--cCHHHHHHHHHHhhhHHhccCc
Confidence 355555 8899999999999999876554
No 86
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=92.50 E-value=0.037 Score=72.97 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCc
Q 000767 632 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 711 (1294)
Q Consensus 632 ~~~~is~llm~l~l~~~l~~~~~~~~~~v~Sk~~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~ 711 (1294)
..+.++.+.+|+.....++-- ++| +++.++.+.+.++--+|+|.++|+.+|. .+.+--.+-+||+|+.
T Consensus 1023 ~~l~i~i~~iF~v~~~~l~~~-------~~s----s~i~~~~~~~~~v~l~g~m~~~~I~~Na-vS~vNlvm~vgi~vef 1090 (1201)
T KOG1933|consen 1023 TNLGIDIVAIFLVTSVLLGLD-------VDS----SLIMVLVDEMILVNLVGFMYLWGISLNA-VSLVNLVMSVGIAVEF 1090 (1201)
T ss_pred hhhhHHHHHHHHHHHHhhccc-------ccc----ceeeeeehhhhhhhHHHHHHhhceeehh-hhhhhhhhhcchhhhH
Confidence 344555555665555544331 333 3445566777788889999999999997 5666677889999999
Q ss_pred eEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHH-HHHHHHHHHHhhccCCchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000767 712 MCILVHAVKRQQLELPLETRISNALVEVGPSITL-ASLSEVLAFAVGSFIPMPA--CRVFSMFAALAVLLDFLLQITAFV 788 (1294)
Q Consensus 712 ~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~-tslt~~~~F~~~~~s~~p~--vr~F~i~aa~av~~~~l~~lt~~p 788 (1294)
..|+++.+.... +.+..+|..+++...|.+++- .++|...+-..+.+.+... +..|.++.+..++-+.-. +.++|
T Consensus 1091 ~~hi~~sf~~s~-~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hG-liflp 1168 (1201)
T KOG1933|consen 1091 CVHITHSFATSS-GPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVGALHG-LIFLP 1168 (1201)
T ss_pred HHHhhcceeecc-CCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeehHHHHHHHHHheee-eeehh
Confidence 999999887543 237899999999999988764 4556566666666655554 556667777666665555 99999
Q ss_pred HHHHHhhhhc
Q 000767 789 ALIVFDFLRA 798 (1294)
Q Consensus 789 alL~l~~~r~ 798 (1294)
.++++.++..
T Consensus 1169 vlls~~g~~~ 1178 (1201)
T KOG1933|consen 1169 VLLSLLGPES 1178 (1201)
T ss_pred hHHHhcCCcc
Confidence 9999987544
No 87
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=61.56 E-value=3 Score=54.17 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=80.9
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHH-HHHHhccc-cchHHHHHHHhhhheeecceeeeehhhhcc----------------
Q 000767 1140 TTCSFWSSAIILLVLTMIVVDLMG-VMAILKIQ-LNAVSVVNLVMAVGIAVEFCVHITHAFSVS---------------- 1201 (1294)
Q Consensus 1140 ~~~s~~~~lii~l~i~~~~v~~~G-~M~l~gi~-Ln~vslv~lvi~iGi~VD~~ihi~~~f~~~---------------- 1201 (1294)
..+|+..+++++..+.+....+.+ .-..+||. +-.+.++..++.|||++|..--+...|.++
T Consensus 345 ~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~ 424 (999)
T KOG3664|consen 345 YTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFL 424 (999)
T ss_pred ecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhccccc
Confidence 347777777777766666554432 22334443 233456677788999999998888777211
Q ss_pred ---CC--CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCC
Q 000767 1202 ---SG--DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLAL-VLLGFLHGLVFLPVVLSVFGP 1275 (1294)
Q Consensus 1202 ---~~--~~~~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f~f~~~~~~-v~~g~l~~LvlLPvlLs~~gp 1275 (1294)
++ .......-.+......++.+. +||..++.....++...++-| ++++.. +..+...-..++|+..|+.-.
T Consensus 425 ~l~~~~~ll~~~~~l~~~h~~~smfvt~-~~t~~~f~~~~ssp~~~lrcf--g~~A~~~v~~n~~~~v~~lPa~~SI~~~ 501 (999)
T KOG3664|consen 425 ELSDHTELLENVFALTLRHASFSMFVTS-LTTACAFYANYSSPVIVLRCF--GIFAGLTVVFNYLLVVLWLPASVSIALR 501 (999)
T ss_pred ccccchhHHHHHHhhhhhhhhHHHHHHH-HHHHhhhhhccccchHHHHHh--ccccccccccccceeEEeccchhhhhhc
Confidence 00 012233334444555677776 688899999888887666643 544432 344555556678886665543
Q ss_pred CC
Q 000767 1276 PS 1277 (1294)
Q Consensus 1276 ~~ 1277 (1294)
..
T Consensus 502 ~~ 503 (999)
T KOG3664|consen 502 LF 503 (999)
T ss_pred cc
Confidence 33
No 88
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=60.67 E-value=20 Score=38.26 Aligned_cols=23 Identities=4% Similarity=0.252 Sum_probs=15.5
Q ss_pred CchhHHHHHHHHHHHHHHHhhcc
Q 000767 1075 NRQIDYVNSMRAAREFSSRVSDS 1097 (1294)
Q Consensus 1075 ~~~~d~i~al~~~r~ia~~~~~~ 1097 (1294)
.+.+|.++.+-+-+++|+++.++
T Consensus 41 ~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 41 KSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred CCHHHHHHHcCCHHHHHHHHHHh
Confidence 45667777777777777776543
No 89
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=56.14 E-value=3.7 Score=45.50 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHH-HHHHHHHHHHHHHHHHHHhcccc
Q 000767 1121 TALINLAIAIGAVFVVCLITTCSFWSSAI-ILLVLTMIVVDLMGVMAILKIQL 1172 (1294)
Q Consensus 1121 ~~~~~l~~al~~v~iv~~l~~~s~~~~li-i~l~i~~~~v~~~G~M~l~gi~L 1172 (1294)
..+.++++.+++|.++++++-|++..++= .++..+|+++.+..+..+.|..|
T Consensus 53 ~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~L 105 (381)
T PF05297_consen 53 TVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTL 105 (381)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHH
Confidence 33445555556666666666677766652 22333444555555666666554
No 90
>COG4709 Predicted membrane protein [Function unknown]
Probab=54.59 E-value=3e+02 Score=29.50 Aligned_cols=27 Identities=4% Similarity=0.115 Sum_probs=17.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhcccC
Q 000767 1073 PLNRQIDYVNSMRAAREFSSRVSDSLQ 1099 (1294)
Q Consensus 1073 ~l~~~~d~i~al~~~r~ia~~~~~~~~ 1099 (1294)
.-++.++.++.+.+-+++|+++..+.+
T Consensus 39 ~GksE~EI~~~LG~P~eiA~ei~s~~~ 65 (195)
T COG4709 39 AGKSEEEIAKDLGDPKEIAAEILSERG 65 (195)
T ss_pred cCCCHHHHHHHhCCHHHHHHHHHHHcc
Confidence 345667777777777777777655444
No 91
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=39.55 E-value=5.7e+02 Score=31.56 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 000767 1207 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY-YFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1279 (1294)
Q Consensus 1207 ~ai~~al~~~g~~V~~~~~lTt~~G~~~L~fs~~~~~~~f-~f~~~~~~v~~g~l~~LvlLPvlLs~~gp~~~~ 1279 (1294)
...+.-.++.+..++.|.++..+.++....+.....+-.. ...++ +.++++.+.| .++|.++.-+|-++..
T Consensus 350 ~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~G-~~lp~~~~k~~~DPa~ 421 (449)
T TIGR00400 350 DFFKVILREICVSILVGAILASVNFLRIVFFQGKLLIAFVVSSSLF-VSLTVAKILG-GLLPIVAKLLKLDPAL 421 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHcCCChhh
Confidence 4455666777777777766555555555444222111111 11121 2223333333 3579999888866543
No 92
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=34.56 E-value=9.8e+02 Score=29.61 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=46.6
Q ss_pred chHHHHHHHhhhheeecceeeeehhhhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhhccCc-hhHHHHHHHH
Q 000767 1173 NAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVI-VLCFSRT-EVFVVYYFQM 1250 (1294)
Q Consensus 1173 n~vslv~lvi~iGi~VD~~ihi~~~f~~~~~~~~~ai~~al~~~g~~V~~~~~lTt~~G~~-~L~fs~~-~~~~~f~f~~ 1250 (1294)
|+.|-...++.=|++.+-. +.....+--.++.+...+.|.++..++|+. +..+... .+--+....+
T Consensus 327 N~GsQ~~tvivRaLa~~~i------------~~~~~~~vl~rE~~vG~~~G~vl~~~~~~~~~~~~~~~~~l~~~v~~al 394 (451)
T COG2239 327 NAGTQAATVIVRALALGEI------------SLKNVFRVLLKELGVGLLLGLVLAIIIGLRVPAWLYGGLLLGLIVALAL 394 (451)
T ss_pred cHHHHHHHHHHHhhccccc------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 6665555555444443322 233455666778888888887766556653 3333332 1111110111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 000767 1251 YLALVLLGFLHGLVFLPVVLSVFGPPSR 1278 (1294)
Q Consensus 1251 ~~~~v~~g~l~~LvlLPvlLs~~gp~~~ 1278 (1294)
++.+++|. ...+++|.++.-+|-++-
T Consensus 395 -~~~~~~A~-l~G~~iP~ll~kl~~DPA 420 (451)
T COG2239 395 -LLNILFAA-LVGVLIPILLKKLGLDPA 420 (451)
T ss_pred -HHHHHHHH-HhhchHHHHHHHcCCCch
Confidence 11122222 234678999988876543
No 93
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=32.48 E-value=8.2e+02 Score=28.13 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhHHHHHHHhhhcccCceEehhHHHHHhcCCCCHHHHHHHHHhhhhhHHHHHHHHH
Q 000767 671 VVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSE 750 (1294)
Q Consensus 671 i~~v~~sv~~s~Gl~~~~Gi~~~~i~~~vipflvlgIGvD~~~~l~~~~~~~~~~~~~~~ai~~al~~~g~si~~tslt~ 750 (1294)
++.+.++.-+++=+-...|+|+=. +.++|.|-+.-|+.-..-..--......+++.++.-.+.+.+...++..+-+-.
T Consensus 140 i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~~~~~~~~~~~~~r~~~~v~~~ell~ 217 (305)
T COG3301 140 ILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTRENPHSTESKFLHRFEIPVVVTELLL 217 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 334444444444455667888743 568888777776643332221111112223445556778888889999998888
Q ss_pred HHHHHhh-ccCCchHHHHHHHHHH
Q 000767 751 VLAFAVG-SFIPMPACRVFSMFAA 773 (1294)
Q Consensus 751 ~~~F~~~-~~s~~p~vr~F~i~aa 773 (1294)
..+|+.+ .+-+..+.|.+.-..+
T Consensus 218 la~f~~l~~~G~~a~~~a~~~al~ 241 (305)
T COG3301 218 LAAFFVLLSLGGVAAARALATALA 241 (305)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHh
Confidence 8888865 5667777766654333
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.25 E-value=54 Score=32.70 Aligned_cols=10 Identities=20% Similarity=-0.081 Sum_probs=3.7
Q ss_pred HHHHHhhhcc
Q 000767 306 GWGFFHRKRE 315 (1294)
Q Consensus 306 ~~~~~~~~~~ 315 (1294)
++++++|+|+
T Consensus 84 i~y~irR~~K 93 (122)
T PF01102_consen 84 ISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHS-
T ss_pred HHHHHHHHhc
Confidence 3344444433
No 95
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=31.60 E-value=60 Score=29.11 Aligned_cols=48 Identities=15% Similarity=0.474 Sum_probs=29.0
Q ss_pred hHHHHHhhCCCCC---CCCCCCHHHH---------HHHHHHHHhhh-----hhccCChhHHhhHH
Q 000767 83 LSSKVQSLCPTIT---GNVCCTEDQF---------DTLRTQVQQAI-----PFLVGCPACLRNFL 130 (1294)
Q Consensus 83 ~~~~l~~~Cp~~~---~~~CC~~~Q~---------~~l~~~~~~~~-----~~~~~CpaC~~N~~ 130 (1294)
....+....-++. +..||-.... +..+.+++.++ .++.-||+|..+|+
T Consensus 21 ~~~l~~~~g~~~~~~~~~~CCG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~~lr 85 (85)
T PF02754_consen 21 LRKLLNKLGIEVVIPENQQCCGAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPSCYMQLR 85 (85)
T ss_pred HHHHHHHcCceeeecCCCCCCChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChhHHHhhC
Confidence 3444454444432 4689976554 33344444444 47889999998874
No 96
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=28.70 E-value=3.1e+02 Score=33.50 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000767 1255 VLLGFLHGLVFLPVVL 1270 (1294)
Q Consensus 1255 v~~g~l~~LvlLPvlL 1270 (1294)
++++++.|++|.=.+.
T Consensus 389 ~l~s~~~a~~~~~lv~ 404 (418)
T cd07912 389 LLFSLLAALLFTILVC 404 (418)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666554444
No 97
>PRK02935 hypothetical protein; Provisional
Probab=28.46 E-value=1.9e+02 Score=27.94 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccccch
Q 000767 665 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 694 (1294)
Q Consensus 665 ~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~ 694 (1294)
++..+.++.-.+++++|.++..|.|.-.+-
T Consensus 38 ~~m~ifm~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 38 IIMTIFMLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334444556677888899999999976554
No 98
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.35 E-value=1.9e+02 Score=28.29 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccccch
Q 000767 665 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 694 (1294)
Q Consensus 665 ~l~l~~i~~v~~sv~~s~Gl~~~~Gi~~~~ 694 (1294)
++..+.++.-+++++++.++..|.|.-.+-
T Consensus 37 ~im~ifmllG~L~~l~S~~VYfwIGmlStk 66 (114)
T PF11023_consen 37 IIMVIFMLLGLLAILASTAVYFWIGMLSTK 66 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 334445555578889999999999976543
No 99
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.90 E-value=1.3e+02 Score=27.98 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccc
Q 000767 296 LYIILVSLFFGWGFFHRKRERSRSFRMKP 324 (1294)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1294)
+..+++++++.|+..+.+|+|++..-.++
T Consensus 40 I~~iFil~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 34445566666766666666655544443
No 100
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=24.49 E-value=2.3e+02 Score=30.98 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.5
Q ss_pred HHHHHhccccchHHHHHHHhhhheeec
Q 000767 1163 GVMAILKIQLNAVSVVNLVMAVGIAVE 1189 (1294)
Q Consensus 1163 G~M~l~gi~Ln~vslv~lvi~iGi~VD 1189 (1294)
.++.++||++++..+.+.++..-+++|
T Consensus 60 ~iL~~fgIsl~af~IaGGiiL~~ia~~ 86 (203)
T PF01914_consen 60 LILNFFGISLPAFRIAGGIILFLIALE 86 (203)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 467789999999999888888777765
No 101
>PTZ00370 STEVOR; Provisional
Probab=23.32 E-value=1.6e+02 Score=33.56 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=8.0
Q ss_pred HHHHHHHHhhccCC
Q 000767 748 LSEVLAFAVGSFIP 761 (1294)
Q Consensus 748 lt~~~~F~~~~~s~ 761 (1294)
.+++++++.++|-|
T Consensus 243 agtAAtaAsaaF~P 256 (296)
T PTZ00370 243 AGTAASAASSAFYP 256 (296)
T ss_pred cchHHHHHHHhhcc
Confidence 34466666666655
No 102
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=22.61 E-value=3.1e+02 Score=26.97 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=14.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 000767 760 IPMPACRVFSMFAALAVLLDFL 781 (1294)
Q Consensus 760 s~~p~vr~F~i~aa~av~~~~l 781 (1294)
.+.|..++.++..++++.+..+
T Consensus 88 ~~~p~~~~a~~~l~~~~~~~l~ 109 (111)
T PF09946_consen 88 NSYPEYTDAGFVLAFSLAFMLI 109 (111)
T ss_pred ccChhHhHHHHHHHHHHHHHHH
Confidence 3677888877776666655443
No 103
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=20.66 E-value=5.5e+02 Score=31.53 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000767 1254 LVLLGFLHGLVFLPVVLS 1271 (1294)
Q Consensus 1254 ~v~~g~l~~LvlLPvlLs 1271 (1294)
+++++++.++.|.-.+++
T Consensus 389 lml~s~L~a~~lsilv~~ 406 (526)
T KOG4433|consen 389 LMLFSFLTALALSILVCS 406 (526)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345666666666555544
No 104
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=20.25 E-value=1.3e+03 Score=26.17 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=23.5
Q ss_pred hHHHHHHH--hhhcccCceEehhHHHHHh------------cCCCCHHHHHHHHHhh
Q 000767 696 IMEVIPFL--VLAVGVDNMCILVHAVKRQ------------QLELPLETRISNALVE 738 (1294)
Q Consensus 696 ~~~vipfl--vlgIGvD~~~~l~~~~~~~------------~~~~~~~~ai~~al~~ 738 (1294)
...++|.. ++|=...-.-+-.++|+++ .-|.++.||....+++
T Consensus 123 ~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~ 179 (250)
T PF03649_consen 123 PRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIRR 179 (250)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46788863 4444444444555666542 1366777775444443
No 105
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=1.7e+03 Score=28.31 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=19.9
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 000767 1133 VFVVCLITTCSFWSSAIILLVLTMIVVDL 1161 (1294)
Q Consensus 1133 v~iv~~l~~~s~~~~lii~l~i~~~~v~~ 1161 (1294)
..++..+++.+|.+++|.+++.+++.+.+
T Consensus 129 ~~i~i~v~~~~w~aalIllit~PlIPlfM 157 (559)
T COG4988 129 LLILIAIFFFNWAAALILLITAPLIPLFM 157 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344455679999999888877766554
Done!