BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000768
(1294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein OS=Homo sapiens GN=ZFC3H1
PE=1 SV=3
Length = 1989
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 100/503 (19%), Positives = 194/503 (38%), Gaps = 56/503 (11%)
Query: 467 MGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDS-----AGCQ 521
+ S + + I+P C ++L G CN+D+C WQH++ + K L D S GC
Sbjct: 1170 LSSVSYSNMIEPDQCFCRFDLTGTCNDDDCQWQHIQDYTLSRKQLFQDILSYNLSLIGCA 1229
Query: 522 IGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDIL--------KADSYQYQSVIARR--H 571
ST + + + K + + + +L K + + + +R
Sbjct: 1230 ETSTNEEITASAEKYVEKLFGVNKDRMSMDQMAVLLVSNINESKGHTPPFTTYKDKRKWK 1289
Query: 572 GLCWQKCLSVSLAISSIYPKDLPADLSLIGDGRI-----ECIGSWNRQSSFFRSRNGVLN 626
W+K +S + S P + + +I + + + + F + + N
Sbjct: 1290 PKFWRKPISDNSFSSDEEQSTGPIKYAFQPENQINVPALDTVVTPDDVRYFTNETDDIAN 1349
Query: 627 KLKQVELSNEQCVEMALLILNQDANKLEG-----MKKALSLLSRALEADPTSEILWITYL 681
L+ L N V++ L + + N+ EG + AL++L+RALE + + +W YL
Sbjct: 1350 -LEASVLENPSHVQLWLKLAYKYLNQNEGECSESLDSALNVLARALENNKDNPEIWCHYL 1408
Query: 682 LIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 741
+F +M +V++ + W +++ + + + L L A
Sbjct: 1409 RLFSKRGTKDEVQEMCETAVEYAPDYQSFW-TFLHLESTFEEKDYVCERMLEFLMGAAKQ 1467
Query: 742 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTC 801
+ + S +L+ L +Q +G + A+ + L +ND +
Sbjct: 1468 ETSNIL--SFQLLEALLFRVQLHIFTGRCQSALAILQNAL---KSAND------GIVAEY 1516
Query: 802 LTISDKLIFWVCCVYLVIYRKLP--------DAVLQLLECEKELFAIDWPPVQLEDDEKQ 853
L SD+ + W+ ++L+ + LP D +++ E F + W VQ
Sbjct: 1517 LKTSDRCLAWLAYIHLIEFNILPSKFYDPSNDNPSRIVNTES--FVMPWQAVQDVKTNPD 1574
Query: 854 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIK 913
+ + E AV + ESL E + + N I +L E +M L + ++
Sbjct: 1575 MLLAVFEDAVKAC----TDESLAVEERIEACLPLYTNMIALHQLLERYEAAMELCKSLLE 1630
Query: 914 LYP---SCLE-LVLMKARLQKHD 932
P LE LV + + +HD
Sbjct: 1631 SCPINCQLLEALVALYLQTNQHD 1653
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 481 PLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKG 540
P+C Y L+G C+N CP+ HV Y + + ++ S + +C +G K K
Sbjct: 722 PVCSYFLKGICSNSNCPYSHV-YVSRK------------AEVCSDFLKGYCPLGAKCKKK 768
Query: 541 HDILTP 546
H +L P
Sbjct: 769 HTLLCP 774
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 37.4 bits (85), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 481 PLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKG 540
P+C Y L+G C+N CP+ HV + R + D + +C +G K K
Sbjct: 727 PVCSYFLKGICSNSNCPYSHV--YVSRKAEVCSD-----------FLKGYCPLGAKCKKK 773
Query: 541 HDILTP 546
H +L P
Sbjct: 774 HTLLCP 779
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 441 NSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLA---IDPLWPLCMYELRGKCNNDECP 497
N D + Y+ SK + ++ + C L I P C Y L+G CNN+ CP
Sbjct: 256 NKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACP 315
Query: 498 WQHV 501
++HV
Sbjct: 316 YRHV 319
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 472 CNLA--IDPLW-PLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQ 528
CNL+ +DP P C Y L GKCNN C + H+ Y ++ + + C++G++
Sbjct: 249 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHY-SENAPICFEFAKYGFCELGTSCKN 307
Query: 529 EH 530
+H
Sbjct: 308 QH 309
>sp|P31491|YERA_YERPE YopE regulator OS=Yersinia pestis GN=yerA PE=1 SV=1
Length = 130
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 445 TQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDE 495
TQ ++ S PD ++ +G ++G + C++ P+ + M+ L NNDE
Sbjct: 9 TQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDE 59
>sp|P31539|HS104_YEAST Heat shock protein 104 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HSP104 PE=1 SV=2
Length = 908
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 820 YRKLPDAVLQLLE--CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEK 877
YR+LPD+ L L++ C A D P +L D K+R ++LI++ + ++E + +S K
Sbjct: 385 YRRLPDSALDLVDISCAGVAVARDSKPEEL--DSKERQLQLIQVEIKALERDEDADSTTK 442
Query: 878 E 878
+
Sbjct: 443 D 443
>sp|P0CO08|SYF1_CRYNJ Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SYF1 PE=3 SV=1
Length = 1031
Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1251 FFKRALSVYPFSIKLWKCYY--DLSKTKGDLNTIVKAAR 1287
++RA++V+P S KLWK YY S G+L K AR
Sbjct: 98 IYERAIAVFPTSYKLWKAYYLTRQSYVLGELTNDAKEAR 136
>sp|P0CO09|SYF1_CRYNB Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SYF1 PE=3 SV=1
Length = 1031
Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1251 FFKRALSVYPFSIKLWKCYY--DLSKTKGDLNTIVKAAR 1287
++RA++V+P S KLWK YY S G+L K AR
Sbjct: 98 IYERAIAVFPTSYKLWKAYYLTRQSYVLGELTNDAKEAR 136
>sp|Q3V0Q1|DYH12_MOUSE Dynein heavy chain 12, axonemal OS=Mus musculus GN=Dnah12 PE=1 SV=2
Length = 3086
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1160 FSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNP-NITDAVPESVLFWASSSLVSA 1218
+ +DL D V G++E + Q +V L+ +P N+ +PE VL WA +L +A
Sbjct: 340 YPTFQDLEDVVLGLIERISETLQTVQTVPSWLSGTSSPVNLDTEIPEHVLQWALCTLRTA 399
Query: 1219 IFH 1221
I H
Sbjct: 400 IQH 402
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 652 KLEGMKKAL-SLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 710
KL G +++ S+L +A+E+ P +EILW+ Y + + G ++ + ++N S +
Sbjct: 555 KLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEI 614
Query: 711 WLMYI 715
WL +
Sbjct: 615 WLAAV 619
>sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR
PE=1 SV=1
Length = 2481
Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 685 YSNTNSVGKDDMFSYSVKHNEG---SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 741
Y N + K ++F Y++++ EG S LWL +S L R + Y +L+V+
Sbjct: 2184 YDNLPLIAKVEVFEYALENTEGNDLSRVLWLKSRSSEVWLERRTN-YTRSLAVMSMVGYI 2242
Query: 742 SDGDEMHASACILD------LFLQMLQCFCMSGNTEKAIQ----RISRLLIPA 784
+ H S +L L + CF S N EK + R++R+L+ A
Sbjct: 2243 LGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKA 2295
>sp|P40872|PKSM_BACSU Polyketide synthase PksM OS=Bacillus subtilis (strain 168) GN=pksM
PE=1 SV=4
Length = 4262
Score = 33.9 bits (76), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 606 ECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMK----KALS 661
E G W RQSS F ++G L K+ + +Q ++ LL L +A K + +K KA+
Sbjct: 1831 EFYGKWIRQSSEFLLQHGYLKKVGDSLVRKDQAEDIELLWLEWNAKKEKWLKDSETKAMV 1890
Query: 662 LLSRAL 667
+L+ A+
Sbjct: 1891 VLAEAM 1896
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,223,853
Number of Sequences: 539616
Number of extensions: 20406850
Number of successful extensions: 52771
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 52707
Number of HSP's gapped (non-prelim): 88
length of query: 1294
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1165
effective length of database: 121,958,995
effective search space: 142082229175
effective search space used: 142082229175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)