Query 000768
Match_columns 1294
No_of_seqs 44 out of 46
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 16:30:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000768.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_539-543//hhsearch_pdb/000768hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 1.0 1 1 102.5 38.6 148 621-782 52-222 (679)
2 2ooe_A Cleavage stimulation fa 1.0 1 1 96.5 36.8 447 625-1261 3-495 (530)
3 2ooe_A Cleavage stimulation fa 1.0 1 1 84.7 31.1 354 621-1078 32-437 (530)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 81.0 28.8 97 622-720 87-197 (679)
5 2y4t_A DNAJ homolog subfamily 1.0 1 1 71.6 25.0 326 621-1061 12-360 (450)
6 2ond_A Cleavage stimulation fa 1.0 1 1 70.5 21.3 248 630-953 3-276 (308)
7 2xpi_A Anaphase-promoting comp 1.0 1 1 69.6 28.1 348 633-1061 82-438 (597)
8 4eqf_A PEX5-related protein; a 1.0 1 1 67.0 17.6 279 632-981 62-352 (365)
9 2xpi_A Anaphase-promoting comp 1.0 1 1 66.1 24.2 312 628-1061 143-472 (597)
10 2uy1_A Cleavage stimulation fa 1.0 1 1 65.9 21.9 315 655-1077 29-365 (493)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=102.51 Aligned_cols=148 Identities=12% Similarity=0.172 Sum_probs=104.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC---CCCCCCHH
Q ss_conf 445886642025607899999999731100108889999989998763099974899999998852888---88720247
Q 000768 621 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTN---SVGKDDMF 697 (1294)
Q Consensus 621 ~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~---~ee~~eM~ 697 (1294)
...++..|.++|.|.+.|++++-....+. .+..+-.+.-|+|+..|.+..+|.-|+..-.+.+. .+...+.|
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~~~-----~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVSLK-----QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999978688999999999998618-----2999999999999988998799999999998637850599999999
Q ss_pred HHHHHCCC--CCHHHHHHHHHHCCCCC--------CH---HHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 77562288--54789999884016721--------15---8899999999812-24689997421036899989999999
Q 000768 698 SYSVKHNE--GSYALWLMYINSRTPLN--------HR---LDAYDAALSVLCR-CASASDGDEMHASACILDLFLQMLQC 763 (1294)
Q Consensus 698 e~AVq~~~--~SY~LWL~YLnsr~~fd--------dr---~~vy~raL~~L~~-~aSa~~~d~~~~SA~iLDl~LQll~~ 763 (1294)
+.||+..+ +|..||.+|+....+.. .+ -.+|++||.++-. .. .|..|-+..+.++..
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~---------~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP---------KSIQFWNEYLHFLEH 197 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS---------SCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHH
T ss_conf 99987547789899999999999985543456501389999999999998196655---------653999999999986
Q ss_pred HH------HCCCHHHHHHHHHHHCC
Q ss_conf 86------23667999999983306
Q 000768 764 FC------MSGNTEKAIQRISRLLI 782 (1294)
Q Consensus 764 Lc------~SGn~~kAIa~l~~lL~ 782 (1294)
.. -.++..++-.+.+-++.
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 3545767787689999999999982
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=96.46 Aligned_cols=447 Identities=12% Similarity=0.089 Sum_probs=228.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
Q ss_conf 86642025607899999999731100108889999989998763099974899999998852888887202477756228
Q 000768 625 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 704 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~ 704 (1294)
+..|...|.|.++|+.++- +..+ ..+++|..++-|||+.+|.+..+|..|..++.+.+..++....|+.||+..
T Consensus 3 e~al~~~P~~~~~w~~l~~-~~~~-----~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIR-EAQN-----QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHH-HHHS-----SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCCHHHHHHHHH-HHHH-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 6686539777999999999-9984-----879999999999998789979999999999986698899999999987228
Q ss_pred CCCHHHHHHHHHHC----CCCCCHH----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH------HHCCCH
Q ss_conf 85478999988401----6721158----899999999812246899974210368999899999998------623667
Q 000768 705 EGSYALWLMYINSR----TPLNHRL----DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCF------CMSGNT 770 (1294)
Q Consensus 705 ~~SY~LWL~YLnsr----~~fddr~----~vy~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQll~~L------c~SGn~ 770 (1294)
| +..+|..|+... ...+... .+|++++..+-... .|+.+....+.+.... .-.|+.
T Consensus 77 p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~---------~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 77 L-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI---------MSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp C-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST---------TCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred C-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 9-84899999999999746504689999999999999778886---------6079999999999607776537877379
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH-HCC-CCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999833066678999763508999851384780068799999998-523-85557300123433434448998778
Q 000768 771 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVI-YRK-LPDAVLQLLECEKELFAIDWPPVQLE 848 (1294)
Q Consensus 771 ~kAIa~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~-f~~-LP~~i~d~~e~~KElf~I~W~~v~l~ 848 (1294)
+.|...++.++.. + . .. .--+|..|..+.. +++ +...++. ..
T Consensus 147 ~~a~~~y~~al~~--P----~-~~------------~~~~~~~~~~~e~~~~~~~~~~~l~-----------------~~ 190 (530)
T 2ooe_A 147 TAVRRVYQRGCVN--P----M-IN------------IEQLWRDYNKYEEGINIHLAKKMIE-----------------DR 190 (530)
T ss_dssp HHHHHHHHHHTTS--C----C-TT------------HHHHHHHHHHHHHHHCHHHHHHHHH-----------------TT
T ss_pred HHHHHHHHHHHHC--H----H-HH------------HHHHHHHHHHHHHHHCHHHHHHHHH-----------------HH
T ss_conf 9999999999966--6----6-35------------9999999999997216667999999-----------------85
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCC-CC-CHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHCCC
Q ss_conf 52399999999999873101347-87653222-21-0013557569999999----631----89999999999995964
Q 000768 849 DDEKQRAIKLIEMAVNSVELYSN-GESLEKET-NL-RSAHCFAVNHIWCMAV----LNG----LECSMNLLEKYIKLYPS 917 (1294)
Q Consensus 849 ~~~~~~llkLfe~Av~s~~~~~~-~Esl~~~~-~l-r~aq~lavN~I~c~~a----le~----~E~a~~Lc~kyvelyP~ 917 (1294)
......+.++++..-......-. -..+++.. .. ....-+...+|.+... ++. .+.++.++++.++.+|.
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~ 270 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 28888799999999999997420345589999865799999999999998709755775126889999999999985789
Q ss_pred HHHHHHHHHHHHCC--------CCCC-------CCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 26899999873001--------2688-------62789999996-09999980679999999999926992458999999
Q 000768 918 CLELVLMKARLQKH--------DFGD-------LSSVGFEEALI-KWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 918 c~eLvL~sArLqk~--------d~~~-------~~~~~Feeal~-~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~r 981 (1294)
..++....+.+... +..+ .+..+|+.|+. .+|+.+. +|..|+.+....|+.+.|..+..+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~----l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML----LYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7799999999999835465532651221211499999999999986866579----999999999863889999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 96532101454556785455788999999998999766679873025799999999788410258999999999997655
Q 000768 982 WFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 982 wf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
-... . ++ +..+.|+++..+..-+++..+|+.++++|++...
T Consensus 347 al~~--------------------------~----p~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 347 LLAI--------------------------E----DI---------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHS--------------------------S----SS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHCC--------------------------C----CC---------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 8576--------------------------4----56---------8309999999999980688999999999973557
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 66799999999998811868988898557899997677873115762466316763127732479887420589777516
Q 000768 1062 SEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFS 1141 (1294)
Q Consensus 1062 ~e~~~hcwrEya~F~~~~~~~~~~d~~~~~~~~ll~~yL~~~~~lp~~~pLsrrfl~~I~k~rv~~li~~~l~P~ssd~s 1141 (1294)
. ....-
T Consensus 388 ~--------------------------------------------------------------------------~~~~~ 393 (530)
T 2ooe_A 388 T--------------------------------------------------------------------------RHHVY 393 (530)
T ss_dssp C--------------------------------------------------------------------------CTHHH
T ss_pred C--------------------------------------------------------------------------CHHHH
T ss_conf 7--------------------------------------------------------------------------50899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67888876507987666556752258899898731575057799999986512699988986245899987544443210
Q 000768 1142 LVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFH 1221 (1294)
Q Consensus 1142 liN~Vle~~yg~SllPq~~~~~K~lvdfvE~imE~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fWA~s~L~nai~~ 1221 (1294)
+-+..++. + ..++++.-....|..++..|.+..+-+....++.+ .+.... |..++--|+..
T Consensus 394 ~~~a~~~~-~-------~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-------~g~~~~----Ar~~~~~al~~ 454 (530)
T 2ooe_A 394 VTAALMEY-Y-------CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-------LNEDNN----TRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHH-H-------HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------TTCHHH----HHHHHHHHHHS
T ss_pred HHHHHHHH-H-------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------CCCHHH----HHHHHHHHHHC
T ss_conf 99999999-8-------80783599999999998789978999999999986-------798866----99999999841
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2768---806999999989841133799999999855301662
Q 000768 1222 AVPV---APEYVWVEAAGILGNISSIEEISERFFKRALSVYPF 1261 (1294)
Q Consensus 1222 AiPv---apE~vWveAa~~l~~l~~~~~v~~rfyq~AlSvyPf 1261 (1294)
.|. ....+|..-+.++...-..+++ ...+++|+..+|-
T Consensus 455 -~~~~~~~~~~lw~~~~~~e~~~G~~~~~-~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 -GSLPPEKSGEIWARFLAFESNIGDLASI-LKVEKRRFTAFRE 495 (530)
T ss_dssp -CCSCGGGCHHHHHHHHHHHHHSSCHHHH-HHHHHHHHHHTHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCH
T ss_conf -5798788999999999999982999999-9999999987731
No 3
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=84.66 Aligned_cols=354 Identities=12% Similarity=0.037 Sum_probs=211.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCCCC----
Q ss_conf 4458866420256078999999997311001088899999899987630999748999999988-52888887202----
Q 000768 621 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIF-YSNTNSVGKDD---- 695 (1294)
Q Consensus 621 ~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly-~q~~~~ee~~e---- 695 (1294)
+.-.+.-+...|.+.++|+.++-..+... ..++|..++.||++.+| +..+|..|+... ...+...+..+
T Consensus 32 ~~~~e~al~~~P~~~~~w~~~~~~~~~~~-----~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 32 RKTYERLVAQFPSSGRFWKLYIEAEIKAK-----NYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999878997999999999998669-----88999999999872289-8489999999999974650468999999
Q ss_pred HHHHHHHCC---CCCHHHHHHHHHHCCC------------CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 477756228---8547899998840167------------2115889999999981224689997421036899989999
Q 000768 696 MFSYSVKHN---EGSYALWLMYINSRTP------------LNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQM 760 (1294)
Q Consensus 696 M~e~AVq~~---~~SY~LWL~YLnsr~~------------fddr~~vy~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQl 760 (1294)
.|+.|++.. +.+..+|..|+.++.. ++....+|.++|. . + .. .... +..-+.++
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~---P----~~-~~~~--~~~~~~~~ 174 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N---P----MI-NIEQ--LWRDYNKY 174 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S---C----CT-THHH--HHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-C---H----HH-HHHH--HHHHHHHH
T ss_conf 99999997788866079999999999607776537877379999999999996-6---6----63-5999--99999999
Q ss_pred HHHH----------HHCCCHHHHHHHHHH------HCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9998----------623667999999983------306667899976350899985138478006879999999852385
Q 000768 761 LQCF----------CMSGNTEKAIQRISR------LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLP 824 (1294)
Q Consensus 761 l~~L----------c~SGn~~kAIa~l~~------lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP 824 (1294)
...+ -..|+...|.+.... .+..+.....|+... ......-+|..|+..-.-+ |
T Consensus 175 e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~--------~~~~~~~~w~~~~~~e~~~--~ 244 (530)
T 2ooe_A 175 EEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP--------QEAQQVDMWKKYIQWEKSN--P 244 (530)
T ss_dssp HHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C--------CHHHHHHHHHHHHHHHHHC--S
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--------HHHHHHHHHHHHHHHHHCC--C
T ss_conf 97216667999999852888879999999999999742034558999986--------5799999999999998709--7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------
Q ss_conf 5573001234334344489987785239999999999987310134787653222210013557569999999-------
Q 000768 825 DAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV------- 897 (1294)
Q Consensus 825 ~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lavN~I~c~~a------- 897 (1294)
. ...+....+.+++.+|+.|+..... +. -+.+++..++..
T Consensus 245 ~------------------~~~~~~~~~~~a~~~y~~al~~~p~---~~------------~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 245 L------------------RTEDQTLITKRVMFAYEQCLLVLGH---HP------------DIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp S------------------CCSCSHHHHHHHHHHHHHHHHHHTT---CH------------HHHHHHHHHHHHHHHHHHT
T ss_pred C------------------CCCCCHHHHHHHHHHHHHHHHHCCC---CH------------HHHHHHHHHHHHHCHHHHH
T ss_conf 5------------------5775126889999999999985789---77------------9999999999983546553
Q ss_pred HHHHH-------HHHHHHHHHHH-HCCCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 63189-------99999999999-5964268999998730-012688627899999960999998067999999999992
Q 000768 898 LNGLE-------CSMNLLEKYIK-LYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 968 (1294)
Q Consensus 898 le~~E-------~a~~Lc~kyve-lyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq 968 (1294)
...++ .|+..+++.++ .+|.+..+....+.+. +.+..+.....|+.++..-|++. ..+|..|+.+...
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHH
T ss_conf 2651221211499999999999986866579999999999863889999999999857645683---0999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 69924589999999653210145455678545578899999999899976667987302579999999978841025899
Q 000768 969 NGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNE 1048 (1294)
Q Consensus 969 ~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~E 1048 (1294)
.|+.+.|+.++.+=.. .. +. ....+.+..-++. . ..++..+
T Consensus 369 ~~~~~~A~~~~~~Al~--------------------------~~----~~-------~~~~~~~~a~~~~-~-~~~~~~~ 409 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARE--------------------------DA----RT-------RHHVYVTAALMEY-Y-CSKDKSV 409 (530)
T ss_dssp HHHHHHHHHHHHHHHT--------------------------CT----TC-------CTHHHHHHHHHHH-H-HTCCHHH
T ss_pred HCCHHHHHHHHHHHHH--------------------------CC----CC-------CHHHHHHHHHHHH-H-HCCCHHH
T ss_conf 0688999999999973--------------------------55----77-------5089999999999-8-8078359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999765566799999999998811
Q 000768 1049 ARLAIDAALKAAASEHFKHCVREHAMLLLI 1078 (1294)
Q Consensus 1049 A~~A~ekALkaa~~e~~~hcwrEya~F~~~ 1078 (1294)
|+..+++|++.... ....|..|+-|...
T Consensus 410 A~~~~e~al~~~p~--~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 410 AFKIFELGLKKYGD--IPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCC--CHHHHHHHHHHHHH
T ss_conf 99999999987899--78999999999986
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=80.97 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=69.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCC--------C
Q ss_conf 45886642025607899999999731100108889999989998763099--9748999999988528888--------8
Q 000768 622 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADP--TSEILWITYLLIFYSNTNS--------V 691 (1294)
Q Consensus 622 ~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~--~S~~LW~~YL~Ly~q~~~~--------e 691 (1294)
.-.+.-+..-|....+|++++-.-+..... +....+-.++.|||...+ .++.||..|+..-...... +
T Consensus 87 ~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~--~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 87 ETFDKLHDRFPLMANIWCMRLSLEFDKMEE--LDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTC--C--CCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999998899879999999999863785--059999999999987547789899999999999985543456501389
Q ss_pred CCCCHHHHHHHC----CCCCHHHHHHHHHHCCC
Q ss_conf 720247775622----88547899998840167
Q 000768 692 GKDDMFSYSVKH----NEGSYALWLMYINSRTP 720 (1294)
Q Consensus 692 e~~eM~e~AVq~----~~~SY~LWL~YLnsr~~ 720 (1294)
.....|+.|+++ .+.|..+|..||.++.+
T Consensus 165 ~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 165 IVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999998196655653999999999986
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=71.63 Aligned_cols=326 Identities=14% Similarity=0.076 Sum_probs=213.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 44588664202560789999999973110010888999998999876309997489999999885288888720247775
Q 000768 621 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYS 700 (1294)
Q Consensus 621 ~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~A 700 (1294)
...+.+.+...|.+++.|..+|..++... .++.|+..+.++++.+|.+...|...-.+|.+.+.-++..+.|..+
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEKHLELGKKLLAAG-----QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 65642356653789999999999999879-----9999999999999849716899999999999879979999999999
Q ss_pred HHCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH--H-----HHHHHHHHHHHHHCCCH
Q ss_conf 62288547899998840---16721158899999999812246899974210368--9-----99899999998623667
Q 000768 701 VKHNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASAC--I-----LDLFLQMLQCFCMSGNT 770 (1294)
Q Consensus 701 Vq~~~~SY~LWL~YLns---r~~fddr~~vy~raL~~L~~~aSa~~~d~~~~SA~--i-----LDl~LQll~~Lc~SGn~ 770 (1294)
++..|.....|...... ...++.+...|.+++. ..+.......+. + ....+.+...+...|+.
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK-------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 844987489999999999986999999999999972-------4999701688999999999999999999999986899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998330666789997635089998513847800687999999985238555730012343343444899877852
Q 000768 771 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD 850 (1294)
Q Consensus 771 ~kAIa~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~ 850 (1294)
+.|+..+..++..... . . .....+.-+|.- ..
T Consensus 160 ~~A~~~~~~~~~~~~~-----~-~------------~~~~~l~~~~~~------------------------------~g 191 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW-----D-A------------ELRELRAECFIK------------------------------EG 191 (450)
T ss_dssp HHHHHHHHHHHHHCTT-----C-H------------HHHHHHHHHHHH------------------------------TT
T ss_pred HHHHHHHHHHHHHCCC-----C-H------------HHHHHHHHHHHH------------------------------CC
T ss_conf 9999999999986889-----7-6------------999999999987------------------------------79
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-----
Q ss_conf 399999999999873101347876532222100135575699999996318999999999999596426899999-----
Q 000768 851 EKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMK----- 925 (1294)
Q Consensus 851 ~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lavN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~s----- 925 (1294)
+.+.+++.|+.+...-. ++ .....++..++.....++.|..++++.++..|.........
T Consensus 192 ~~~~A~~~~~~~~~~~~---~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKN---DN------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp CGGGGHHHHHHHHHHHC---SC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC---CC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999998688---98------------7999999999997599999999999998759980899999999999
Q ss_pred -------HHHH-CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf -------8730-01268862789999996099999806799999999999269924589999999653210145455678
Q 000768 926 -------ARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEIS 997 (1294)
Q Consensus 926 -------ArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~ 997 (1294)
+.++ +.+..+.+...|+.++...|.+..-...+|+..+......|+.+.|..++.+....
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------ 324 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------------ 324 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------
T ss_conf 99999999999871799999999999985087336899999999999999878899999999999884------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 5455788999999998999766679873025799999999788410258999999999997655
Q 000768 998 DPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 998 d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
.++ ..-.|.++...-.-+++..+|...+++|++...
T Consensus 325 ------------------~p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 325 ------------------EPD----------NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp ------------------CTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred ------------------CCC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf ------------------845----------489999999999870379999999999988593
No 6
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=70.48 Aligned_cols=248 Identities=10% Similarity=0.077 Sum_probs=136.4
Q ss_pred HCCCCHHHHHHHHHHHHHHCCC--HHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-------CCC-------CC
Q ss_conf 0256078999999997311001--088-899999899987630999748999999988528-------888-------87
Q 000768 630 QVELSNEQCVEMALLILNQDAN--KLE-GMKKALSLLSRALEADPTSEILWITYLLIFYSN-------TNS-------VG 692 (1294)
Q Consensus 630 e~p~D~elwlkLAl~~Lnq~~n--~~e-~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~-------~~~-------ee 692 (1294)
+.+...++|.+++-.-...+.. ... ...+|+.++.|||+.+|.++.+|..|..++.+. +.. ++
T Consensus 3 ~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHH
T ss_conf 57999999999999987496668855899999999999999876898799999999998735343312540000001699
Q ss_pred CCCHHHHHHH-CCCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2024777562-2885478999988401---67211588999999998122468999742103689998999999986236
Q 000768 693 KDDMFSYSVK-HNEGSYALWLMYINSR---TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 768 (1294)
Q Consensus 693 ~~eM~e~AVq-~~~~SY~LWL~YLnsr---~~fddr~~vy~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQll~~Lc~SG 768 (1294)
..+.|+.|++ ..|.+..+|..|.... ..++....+|+++|.. .+.+ .. . +.+.+..++...|
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~--~--~~~~~~~~~~~~~ 148 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDID---PT--L--VYIQYMKFARRAE 148 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSC---TH--H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CCCC---CC--H--HHHHHHHHHHHHC
T ss_conf 9999999999859524799999899988558999999999999815-------3667---35--8--9999999999844
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 67999999983306667899976350899985138478006879999999852385557300123433434448998778
Q 000768 769 NTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLE 848 (1294)
Q Consensus 769 n~~kAIa~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~ 848 (1294)
+.+.|+..+..++..... . .-+|+..+.+-.. .
T Consensus 149 ~~~~A~~~~~~a~~~~p~-------~-------------~~~~~~~a~~~~~---------------------------~ 181 (308)
T 2ond_A 149 GIKSGRMIFKKAREDART-------R-------------HHVYVTAALMEYY---------------------------C 181 (308)
T ss_dssp CHHHHHHHHHHHHTSTTC-------C-------------THHHHHHHHHHHH---------------------------T
T ss_pred CHHHHHHHHHHHHHCCCC-------C-------------HHHHHHHHHHHHH---------------------------H
T ss_conf 889999999999856898-------8-------------7999999999998---------------------------7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CHHHHHHH
Q ss_conf 5239999999999987310134787653222210013557569999999631899999999999959---6-42689999
Q 000768 849 DDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY---P-SCLELVLM 924 (1294)
Q Consensus 849 ~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lavN~I~c~~ale~~E~a~~Lc~kyvely---P-~c~eLvL~ 924 (1294)
..+.+.+.++|+.|+.... +. -.+..+++.+.....+++.|+.++++.++.+ | ...++...
T Consensus 182 ~~~~~~A~~~~~~al~~~p----~~-----------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~ 246 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYG----DI-----------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHT----TC-----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC----CC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 5997999999999987678----82-----------99999999999988998999999999974568998999999999
Q ss_pred HHHHHCC-CCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9873001-2688627899999960999998
Q 000768 925 KARLQKH-DFGDLSSVGFEEALIKWPKGVP 953 (1294)
Q Consensus 925 sArLqk~-d~~~~~~~~Feeal~~wPKea~ 953 (1294)
.+++... +..+....++..++...|+++.
T Consensus 247 ~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 247 FLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999849989999999999987653025
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=69.56 Aligned_cols=348 Identities=11% Similarity=0.023 Sum_probs=185.3
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf 60789999999973110010888999998999876309997489999999885288888720247775622885478999
Q 000768 633 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL 712 (1294)
Q Consensus 633 ~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL 712 (1294)
.+++.|..++-.++... .++.|+..+.++++.+|.. ..|......|.+.+.-++....+..+++. +.+-..|.
T Consensus 82 ~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQ-----QYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHH
T ss_conf 89999999999998745-----8347999999999608993-57999999999747699999999987335-45650899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 98840167211588999999998122468999--------7421036899989999999862366799999998330666
Q 000768 713 MYINSRTPLNHRLDAYDAALSVLCRCASASDG--------DEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPA 784 (1294)
Q Consensus 713 ~YLnsr~~fddr~~vy~raL~~L~~~aSa~~~--------d~~~~SA~iLDl~LQll~~Lc~SGn~~kAIa~l~~lL~~a 784 (1294)
..+..-.. ..-++.|+..+-+....... +.......-......|...++..|+.+.|+..+..++...
T Consensus 155 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 155 LAAFCLVK----LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHH----TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999998----86699999998424886322323433432112351258999998899998399899999999999729
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78999763508999851384780068799999998523855573001234334344489987785239999999999987
Q 000768 785 TGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVN 864 (1294)
Q Consensus 785 ~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~ 864 (1294)
-. .+ .....+..+.. ...-..+ ..++.+.|.+.... .......++.. .-..-......+.++++|+.+.+
T Consensus 231 p~--~~--~~~~~l~~~~~-~~~~~~~-~~~~~l~~~~~~~~---~~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 231 AK--CY--EAFDQLVSNHL-LTADEEW-DLVLKLNYSTYSKE---DAAFLRSLYML-KLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp TT--CH--HHHHHHHHTTC-SCHHHHH-HHHHHSCTHHHHGG---GHHHHHHHHHT-TSCTTTTHHHHHHHHHHHHTSTT
T ss_pred CH--HH--HHHHHHHHHHC-CCCHHHH-HHHHHCCCCCCCCC---HHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 32--56--99999998503-4615678-99986577423443---08899999999-99998073139999999987643
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCCCCCCHHHHHH
Q ss_conf 31013478765322221001355756999999963189999999999995964268999998730-01268862789999
Q 000768 865 SVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEE 943 (1294)
Q Consensus 865 s~~~~~~~Esl~~~~~lr~aq~lavN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Fee 943 (1294)
.- . -.....+++..+.....++.|..++++.++..|.........+.++ +.+..+.+...|+.
T Consensus 301 ~~----------~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 301 LE----------K------SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp GG----------G------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CC----------C------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 88----------3------0999999999999846899999999999972955379999999999982777799999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99609999980679999999999926992458999999965321014545567854557889999999989997666798
Q 000768 944 ALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSN 1023 (1294)
Q Consensus 944 al~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~ 1023 (1294)
++...|.++ .+|+..+......|..+.|.+++.+-... .++
T Consensus 365 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------~~~----- 405 (597)
T 2xpi_A 365 LVDRHPEKA----VTWLAVGIYYLCVNKISEARRYFSKSSTM------------------------------DPQ----- 405 (597)
T ss_dssp HHHHCTTSH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTT-----
T ss_pred HHHHCCCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------------------CCC-----
T ss_conf 985183547----99999999999835699999999999872------------------------------977-----
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 73025799999999788410258999999999997655
Q 000768 1024 RNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1024 s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
....|.++...-.-+++..||...++++++...
T Consensus 406 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 406 -----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf -----789999999999975777999999999998681
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=1.00 E-value=1 Score=67.04 Aligned_cols=279 Identities=11% Similarity=-0.017 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHH
Q ss_conf 56078999999997311001088899999899987630999748999999988528888872024777562288547899
Q 000768 632 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALW 711 (1294)
Q Consensus 632 p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LW 711 (1294)
+.+.+.|+.+|..++... .+++|+..+.++++.+|.+...|...-.+|.+.+.-++..+.|..|++..|.....|
T Consensus 62 ~~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEG-----DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TTTCTTHHHHHHHHHHHT-----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 121468999999999878-----989999999999875968799999999999977999999999999986298778999
Q ss_pred HHHHHH---CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 998840---16721158899999999812246899974210368999899999998623667999999983306667899
Q 000768 712 LMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 788 (1294)
Q Consensus 712 L~YLns---r~~fddr~~vy~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQll~~Lc~SGn~~kAIa~l~~lL~~a~~sd 788 (1294)
...... ...++.+...|.+++..--....... .-+.+..+...+..++...|+...|+..+..++.......
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVK-----NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999997335599999999999874942057886-----6333648899999998501369999999999997496745
Q ss_pred CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 97635089998513847800687999999985238555730012343343444899877852399999999999873101
Q 000768 789 DRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVEL 868 (1294)
Q Consensus 789 ~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~ 868 (1294)
.+ .....+..+|.. ..+.+.+++.|+.++....
T Consensus 212 ~~----------------~~~~~l~~~~~~------------------------------~g~~~~A~~~~~~al~~~p- 244 (365)
T 4eqf_A 212 DP----------------DLQTGLGVLFHL------------------------------SGEFNRAIDAFNAALTVRP- 244 (365)
T ss_dssp CH----------------HHHHHHHHHHHH------------------------------HTCHHHHHHHHHHHHHHCT-
T ss_pred CH----------------HHHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHCC-
T ss_conf 79----------------999999999998------------------------------7889999999999987497-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHC
Q ss_conf 3478765322221001355756999999963189999999999995964268999998730-012688627899999960
Q 000768 869 YSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIK 947 (1294)
Q Consensus 869 ~~~~Esl~~~~~lr~aq~lavN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~ 947 (1294)
+. -....++..++....+++.|...+++.++..|...+....++.++ +.+..+.+...|+.++..
T Consensus 245 ---~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 245 ---ED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp ---TC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ---CC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ---87-----------7999999999998488899999999998529995399977999999878899999999999983
Q ss_pred CCCCCCC--------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999980--------679999999999926992458999999
Q 000768 948 WPKGVPG--------IQCIWNQYVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 948 wPKea~G--------iQ~IWnQy~e~aLq~~~~d~A~~il~r 981 (1294)
.|+...- ...+|+..+......|+.+++.++..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 704378765440556888999999999974858899988882
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=66.13 Aligned_cols=312 Identities=10% Similarity=0.002 Sum_probs=174.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC----------------CCCHHHHHHHHHHHHCCCCCC
Q ss_conf 4202560789999999973110010888999998999876309----------------997489999999885288888
Q 000768 628 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEAD----------------PTSEILWITYLLIFYSNTNSV 691 (1294)
Q Consensus 628 vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan----------------~~S~~LW~~YL~Ly~q~~~~e 691 (1294)
+...|.|...|..++..+.... .++.|+.++.+....+ +.++..|.....+|.+.+..+
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLY-----DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTT-----CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 7335456508999999999886-----69999999842488632232343343211235125899999889999839989
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 72024777562288547899998840167211588999999998-12246899974210368999899999998623667
Q 000768 692 GKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVL-CRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 770 (1294)
Q Consensus 692 e~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~vy~raL~~L-~~~aSa~~~d~~~~SA~iLDl~LQll~~Lc~SGn~ 770 (1294)
+..+.|..+++..|.....|................. +..+ ..... +.+ ......+...+...++..|+.
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~---~~~l~~~~~~--~~~----~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL---VLKLNYSTYS--KED----AAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH---HHHSCTHHHH--GGG----HHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHH---HHHCCCCCCC--CCH----HHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999729325699999998503461567899---9865774234--430----889999999999998073139
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998330666789997635089998513847800687999999985238555730012343343444899877852
Q 000768 771 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD 850 (1294)
Q Consensus 771 ~kAIa~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~ 850 (1294)
+.|+..+..++.. | +....|..-+.+.. ...
T Consensus 289 ~~A~~~~~~~~~~------~---------------~~~~~~~~l~~~~~----------------------------~~g 319 (597)
T 2xpi_A 289 RRAEDYLSSINGL------E---------------KSSDLLLCKADTLF----------------------------VRS 319 (597)
T ss_dssp HHHHHHHHTSTTG------G---------------GCHHHHHHHHHHHH----------------------------HTT
T ss_pred HHHHHHHHHHHCC------C---------------CHHHHHHHHHHHHH----------------------------HHC
T ss_conf 9999999876438------8---------------30999999999999----------------------------846
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Q ss_conf 3999999999998731013478765322221001355756999999963189999999999995964268999998730-
Q 000768 851 EKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ- 929 (1294)
Q Consensus 851 ~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lavN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq- 929 (1294)
..+.++++|+.+...-. ++ ......++.++.....++.|..++.+.++..|........++.++
T Consensus 320 ~~~~A~~~~~~~~~~~~---~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDP---YN------------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp CHHHHHHHHHHHHHHCT---TC------------CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---CC------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999999999997295---53------------7999999999998277779999999998518354799999999999
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01268862789999996099999806799999999999269924589999999653210145455678545578899999
Q 000768 930 KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSP 1009 (1294)
Q Consensus 930 k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl 1009 (1294)
+.+..+.+...|+.++...|+.+. .|+..+....+.|..+.|.+++.+-....
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------- 437 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGP----AWIGFAHSFAIEGEHDQAISAYTTAARLF----------------------- 437 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------------
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf 835699999999999872977789----99999999997577799999999999868-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9998999766679873025799999999788410258999999999997655
Q 000768 1010 ESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1010 ~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
+ .+ .+. |.++...-.-.++..||...++++++...
T Consensus 438 -~-----~~--------~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 438 -Q-----GT--------HLP---YLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp -T-----TC--------SHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -C-----CC--------HHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf -1-----34--------389---99999999985799999999999998488
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=65.95 Aligned_cols=315 Identities=12% Similarity=0.098 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHCC---CCCHHHHHHHHHHCCCC-------CC
Q ss_conf 89999989998763099974899999998852888-887202477756228---85478999988401672-------11
Q 000768 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTN-SVGKDDMFSYSVKHN---EGSYALWLMYINSRTPL-------NH 723 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~-~ee~~eM~e~AVq~~---~~SY~LWL~YLnsr~~f-------dd 723 (1294)
..+++-.++.|||...| |+.||..|+..-.+.+. ++.....|+.||.+. +.|+.+|..|+.+...+ +.
T Consensus 29 ~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp CHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 99999999999856699-97999999999998475699999999999987688866189999999999736065679999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHC
Q ss_conf 58899999999812246899974210368999899999998623667999999983306667899976350-89998513
Q 000768 724 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLF-LSDILTCL 802 (1294)
Q Consensus 724 r~~vy~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQll~~Lc~SGn~~kAIa~l~~lL~~a~~sd~p~~~s-ls~Il~~L 802 (1294)
.-.+|.|||.. +- ..... +...+.++. .+.+...+...+....+.-.. -+. ...+...+
T Consensus 108 vR~iy~rAL~~----P~--~~~~~-----lw~~Y~~fE----~~~~~~~~~~~~~~~~~~y~~-----ar~~y~~~~~~~ 167 (493)
T 2uy1_A 108 IRNGYMRALQT----PM--GSLSE-----LWKDFENFE----LELNKITGKKIVGDTLPIFQS-----SFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHHHTS----CC--TTHHH-----HHHHHHHHH----HHHCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----HH--HHHHH-----HHHHHHHHH----HHHCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf 99999999827----35--46999-----999999999----874610178899998178899-----999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 84780068799999998523855573001234334344489987785239999999999987310134787653222210
Q 000768 803 TISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLR 882 (1294)
Q Consensus 803 T~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr 882 (1294)
.....-.|..|+-+-.-+ +.+.. + ...+.++..+++.|+..+..+
T Consensus 168 -~~~s~~~W~~y~~~E~~~--------~~~~~------------~-~~~~~Rv~~~ye~al~~~p~~------------- 212 (493)
T 2uy1_A 168 -RGWSVKNAARLIDLEMEN--------GMKLG------------G-RPHESRMHFIHNYILDSFYYA------------- 212 (493)
T ss_dssp -HTCSHHHHHHHHHHHHTC--------TTCCC------------H-HHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred -HHCCHHHHHHHHHHHHCC--------CCCCC------------C-HHHHHHHHHHHHHHHHCCCCC-------------
T ss_conf -434299999999998629--------86576------------2-125999999999998728998-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC---CC------CCC
Q ss_conf 013557569999999631899999999999959642689999987300126886278999999609---99------998
Q 000768 883 SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKW---PK------GVP 953 (1294)
Q Consensus 883 ~aq~lavN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~~~~~~~Feeal~~w---PK------ea~ 953 (1294)
--+-++++.++.-...++.|+++.++.++. |-+..|.+..+.....+ .+|+.+.... .. ..+
T Consensus 213 --~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~------~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 213 --EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE------AVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT------HHHHHHHHHTC----------CHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHH------HHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf --999999999998759989999999998718-99699999987651056------899999999986111012232045
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 06799999999999269924589999999653210145455678545578899999999899976667987302579999
Q 000768 954 GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1033 (1294)
Q Consensus 954 GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~l 1033 (1294)
-...+|-+|+.|....++.+.|+.++.+. . . ++. .. . + |
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~------~-------------------~~~--~~----------~-v--~ 322 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-G------N-------------------EGV--GP----------H-V--F 322 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T------T-------------------SCC--CH----------H-H--H
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHH-H------C-------------------CCC--CH----------H-H--H
T ss_conf 61899999999998717889999999986-2------7-------------------788--85----------9-9--9
Q ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978841-02589999999999976556679999999999881
Q 000768 1034 LNLSLHRLL-QNDWNEARLAIDAALKAAASEHFKHCVREHAMLLL 1077 (1294)
Q Consensus 1034 LNlsL~~~L-q~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~ 1077 (1294)
+-.+..... .++...|+-.+++|++.-. . ...+|.+|+-|..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~-~-~~~~~~~yid~e~ 365 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHP-D-STLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCT-T-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-C-CHHHHHHHHHHHH
T ss_conf 99999999878996899999999998789-9-7899999999998
Done!