Query 000770
Match_columns 1294
No_of_seqs 44 out of 46
Neff 3.4
Searched_HMMs 46136
Date Mon Apr 1 23:24:15 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4839 Uncharacterized conser 100.0 1.3E-51 2.7E-56 469.3 9.7 653 456-1185 31-752 (753)
2 KOG4839 Uncharacterized conser 100.0 1.6E-47 3.6E-52 435.8 7.1 445 23-591 304-753 (753)
3 PF08424 NRDE-2: NRDE-2, neces 99.6 1.3E-14 2.9E-19 160.9 14.5 163 621-783 5-183 (321)
4 TIGR02917 PEP_TPR_lipo putativ 99.2 1.3E-06 2.9E-11 102.0 47.7 307 623-983 147-458 (899)
5 TIGR02917 PEP_TPR_lipo putativ 99.1 3.6E-06 7.8E-11 98.5 44.8 526 626-1281 354-889 (899)
6 PF10650 zf-C3H1: Putative zin 98.7 4.3E-09 9.3E-14 77.6 1.0 22 481-502 1-23 (23)
7 PRK10049 pgaA outer membrane p 98.6 3.3E-06 7.2E-11 103.9 24.0 322 624-988 106-459 (765)
8 KOG0495 HAT repeat protein [RN 98.6 2.9E-06 6.2E-11 101.9 22.1 392 623-1077 337-764 (913)
9 PRK11447 cellulose synthase su 98.6 0.0014 3.1E-08 84.6 47.0 527 622-1279 49-653 (1157)
10 PRK15174 Vi polysaccharide exp 98.5 2.5E-05 5.4E-10 95.1 27.5 383 626-1149 101-500 (656)
11 PRK15174 Vi polysaccharide exp 98.5 0.00011 2.3E-09 89.8 30.1 326 624-1076 65-401 (656)
12 KOG0495 HAT repeat protein [RN 98.4 0.00051 1.1E-08 83.4 34.2 490 628-1287 278-811 (913)
13 KOG2076 RNA polymerase III tra 98.3 0.0022 4.7E-08 80.2 36.1 567 627-1264 165-855 (895)
14 PRK11788 tetratricopeptide rep 98.2 0.00031 6.7E-09 77.6 24.2 281 625-988 59-350 (389)
15 PRK11447 cellulose synthase su 98.2 0.00035 7.6E-09 90.0 27.5 89 889-981 607-696 (1157)
16 PRK10049 pgaA outer membrane p 98.2 0.00016 3.6E-09 89.4 23.2 368 626-1074 74-475 (765)
17 TIGR00990 3a0801s09 mitochondr 98.1 0.0013 2.8E-08 79.1 26.8 134 888-1061 436-573 (615)
18 TIGR00990 3a0801s09 mitochondr 98.0 0.00054 1.2E-08 82.2 22.1 257 631-963 327-587 (615)
19 PRK11788 tetratricopeptide rep 97.9 0.002 4.3E-08 71.4 22.5 249 655-981 50-307 (389)
20 KOG1915 Cell cycle control pro 97.9 0.0019 4E-08 76.7 22.9 415 620-1107 58-541 (677)
21 PF13429 TPR_15: Tetratricopep 97.8 4.7E-05 1E-09 81.9 8.2 265 636-984 9-276 (280)
22 PRK12370 invasion protein regu 97.5 0.031 6.7E-07 67.2 26.1 264 630-977 251-528 (553)
23 KOG1915 Cell cycle control pro 97.4 0.026 5.5E-07 67.6 22.5 280 631-982 240-533 (677)
24 KOG2047 mRNA splicing factor [ 97.3 0.5 1.1E-05 58.7 33.1 50 1027-1076 245-295 (835)
25 TIGR02521 type_IV_pilW type IV 97.3 0.044 9.4E-07 54.1 19.6 71 632-707 28-98 (234)
26 PRK14574 hmsH outer membrane p 97.2 0.046 9.9E-07 69.5 23.7 120 852-979 383-507 (822)
27 PF05843 Suf: Suppressor of fo 97.1 0.0022 4.7E-08 71.0 10.1 145 887-1072 3-150 (280)
28 PRK12370 invasion protein regu 97.0 0.0056 1.2E-07 73.4 12.9 146 623-783 283-435 (553)
29 TIGR00540 hemY_coli hemY prote 97.0 0.11 2.4E-06 60.1 22.6 328 625-1061 62-401 (409)
30 PRK14574 hmsH outer membrane p 97.0 1.3 2.8E-05 56.9 33.4 364 657-1081 51-465 (822)
31 KOG1070 rRNA processing protei 96.9 0.027 5.7E-07 73.5 17.9 205 663-981 1447-1659(1710)
32 PRK10370 formate-dependent nit 96.9 0.0062 1.3E-07 64.4 10.6 108 622-734 60-173 (198)
33 PF05843 Suf: Suppressor of fo 96.7 0.0032 7E-08 69.7 7.4 108 625-737 25-139 (280)
34 TIGR02521 type_IV_pilW type IV 96.6 0.14 3.1E-06 50.5 17.1 134 886-1061 32-166 (234)
35 PF13429 TPR_15: Tetratricopep 96.5 0.0035 7.6E-08 67.7 5.6 137 629-782 140-276 (280)
36 PLN03218 maturation of RBCL 1; 96.5 0.35 7.7E-06 63.3 24.1 320 655-1058 385-712 (1060)
37 KOG1258 mRNA processing protei 96.4 2.4 5.2E-05 52.5 28.4 384 627-1084 71-493 (577)
38 KOG2047 mRNA splicing factor [ 96.2 1.7 3.7E-05 54.3 26.0 157 624-786 16-201 (835)
39 PRK10747 putative protoheme IX 96.2 0.23 5E-06 57.5 18.1 305 625-981 62-386 (398)
40 KOG2002 TPR-containing nuclear 96.1 3.3 7.3E-05 53.7 28.2 473 630-1191 228-760 (1018)
41 cd05804 StaR_like StaR_like; a 96.0 3.3 7.2E-05 45.9 28.2 327 631-1061 2-338 (355)
42 PRK11189 lipoprotein NlpI; Pro 95.9 0.13 2.8E-06 57.2 14.0 107 621-732 84-192 (296)
43 PLN03218 maturation of RBCL 1; 95.8 1 2.2E-05 59.2 23.4 284 655-981 487-779 (1060)
44 TIGR00540 hemY_coli hemY prote 95.8 1.5 3.3E-05 51.0 22.5 250 655-981 133-395 (409)
45 PRK09782 bacteriophage N4 rece 95.8 0.64 1.4E-05 60.6 21.2 268 624-982 464-738 (987)
46 PF12569 NARP1: NMDA receptor- 95.7 0.4 8.6E-06 58.5 17.8 235 726-981 18-287 (517)
47 PRK10370 formate-dependent nit 95.6 0.055 1.2E-06 57.4 9.3 127 653-788 52-178 (198)
48 PF13414 TPR_11: TPR repeat; P 95.6 0.02 4.2E-07 49.4 4.7 68 633-705 1-69 (69)
49 KOG1126 DNA-binding cell divis 95.6 0.12 2.5E-06 63.8 12.7 225 653-956 397-628 (638)
50 PLN03077 Protein ECB2; Provisi 95.4 12 0.00026 47.7 40.6 91 887-980 356-448 (857)
51 PRK09782 bacteriophage N4 rece 95.3 2 4.3E-05 56.3 23.3 239 657-981 458-702 (987)
52 PRK11189 lipoprotein NlpI; Pro 95.3 0.15 3.3E-06 56.8 11.8 180 888-1071 67-277 (296)
53 cd00189 TPR Tetratricopeptide 94.9 0.22 4.8E-06 40.8 8.8 92 889-984 4-96 (100)
54 PRK15179 Vi polysaccharide bio 94.6 0.65 1.4E-05 58.5 15.6 173 887-1103 88-269 (694)
55 PF09295 ChAPs: ChAPs (Chs5p-A 94.5 0.21 4.7E-06 59.0 10.7 122 887-1055 171-293 (395)
56 PLN03081 pentatricopeptide (PP 94.0 2.6 5.5E-05 52.3 18.7 272 657-983 140-418 (697)
57 KOG1070 rRNA processing protei 93.9 0.57 1.2E-05 62.0 13.3 189 620-832 1443-1658(1710)
58 TIGR02552 LcrH_SycD type III s 93.9 0.25 5.3E-06 47.3 7.9 105 624-733 6-113 (135)
59 PLN03081 pentatricopeptide (PP 93.7 3.9 8.3E-05 50.8 19.7 90 887-981 464-553 (697)
60 KOG4626 O-linked N-acetylgluco 93.7 7.1 0.00015 49.1 21.2 266 655-953 131-423 (966)
61 TIGR03302 OM_YfiO outer membra 93.3 3.6 7.7E-05 43.3 16.1 201 724-983 3-230 (235)
62 KOG2002 TPR-containing nuclear 93.1 39 0.00085 44.6 28.3 478 600-1157 12-621 (1018)
63 TIGR02552 LcrH_SycD type III s 93.1 0.57 1.2E-05 44.8 9.0 90 888-981 20-110 (135)
64 COG4235 Cytochrome c biogenesi 93.0 0.48 1E-05 54.2 9.7 91 622-718 143-236 (287)
65 cd00189 TPR Tetratricopeptide 93.0 0.4 8.7E-06 39.3 6.9 76 637-717 2-77 (100)
66 PLN02789 farnesyltranstransfer 92.5 5 0.00011 46.3 17.0 210 656-932 53-268 (320)
67 PLN03077 Protein ECB2; Provisi 92.3 26 0.00057 44.7 24.4 110 850-979 603-714 (857)
68 COG3063 PilF Tfp pilus assembl 92.2 1.2 2.7E-05 49.9 11.2 133 636-786 36-171 (250)
69 smart00386 HAT HAT (Half-A-TPR 91.8 0.16 3.5E-06 37.3 2.7 27 1248-1274 6-32 (33)
70 TIGR02795 tol_pal_ybgF tol-pal 91.7 1.7 3.7E-05 39.9 9.9 97 890-987 7-107 (119)
71 PRK15359 type III secretion sy 91.7 0.57 1.2E-05 47.2 7.4 99 627-733 19-120 (144)
72 KOG1156 N-terminal acetyltrans 91.3 10 0.00023 47.7 18.6 81 898-982 384-465 (700)
73 PF13432 TPR_16: Tetratricopep 90.9 0.36 7.7E-06 41.4 4.4 52 655-706 12-63 (65)
74 PF13432 TPR_16: Tetratricopep 90.4 0.49 1.1E-05 40.6 4.8 60 892-951 4-64 (65)
75 PRK15359 type III secretion sy 90.2 1.9 4.1E-05 43.5 9.5 92 889-984 28-120 (144)
76 KOG2396 HAT (Half-A-TPR) repea 89.9 0.56 1.2E-05 57.0 6.3 96 631-731 101-197 (568)
77 cd05804 StaR_like StaR_like; a 89.7 1.8 4E-05 47.8 9.7 92 890-981 119-211 (355)
78 PF14559 TPR_19: Tetratricopep 89.4 0.61 1.3E-05 40.0 4.6 58 655-713 6-63 (68)
79 COG3063 PilF Tfp pilus assembl 89.3 2.5 5.4E-05 47.6 10.2 147 618-785 52-204 (250)
80 PF13371 TPR_9: Tetratricopept 89.3 0.38 8.2E-06 41.8 3.3 52 655-706 10-61 (73)
81 KOG1125 TPR repeat-containing 89.1 1 2.2E-05 55.3 7.8 49 623-676 307-355 (579)
82 PF09976 TPR_21: Tetratricopep 89.0 4.4 9.6E-05 40.5 11.0 80 899-979 25-108 (145)
83 PRK10747 putative protoheme IX 88.9 3 6.4E-05 48.6 11.1 129 886-1061 264-392 (398)
84 KOG4162 Predicted calmodulin-b 88.2 73 0.0016 41.4 22.5 116 617-737 459-576 (799)
85 TIGR03302 OM_YfiO outer membra 87.6 28 0.00061 36.7 16.4 149 888-1061 36-197 (235)
86 PLN03088 SGT1, suppressor of 87.5 1.7 3.6E-05 50.4 7.9 81 624-709 25-105 (356)
87 PF14559 TPR_19: Tetratricopep 87.2 0.7 1.5E-05 39.6 3.6 54 898-951 4-58 (68)
88 KOG2076 RNA polymerase III tra 86.7 1.2E+02 0.0026 40.1 23.4 332 883-1285 139-505 (895)
89 PF13428 TPR_14: Tetratricopep 86.6 1.5 3.1E-05 36.0 5.0 42 636-682 2-43 (44)
90 PRK11906 transcriptional regul 86.5 11 0.00023 46.1 13.9 139 630-783 243-401 (458)
91 smart00386 HAT HAT (Half-A-TPR 86.1 1.2 2.6E-05 32.6 3.9 28 656-683 3-30 (33)
92 COG5191 Uncharacterized conser 85.7 0.66 1.4E-05 53.9 3.4 101 615-727 94-195 (435)
93 PRK11906 transcriptional regul 85.6 5.2 0.00011 48.6 10.8 122 848-981 270-397 (458)
94 KOG2396 HAT (Half-A-TPR) repea 85.6 2.2 4.7E-05 52.2 7.6 55 625-683 129-183 (568)
95 PLN02789 farnesyltranstransfer 85.5 4.5 9.7E-05 46.7 9.9 105 625-733 61-170 (320)
96 TIGR02795 tol_pal_ybgF tol-pal 84.7 7.6 0.00016 35.6 9.2 92 850-953 16-111 (119)
97 PLN03088 SGT1, suppressor of 84.6 2.8 6E-05 48.6 7.8 79 899-981 16-95 (356)
98 KOG0553 TPR repeat-containing 84.2 2.7 5.8E-05 48.6 7.3 96 637-733 76-177 (304)
99 PF08424 NRDE-2: NRDE-2, neces 83.8 16 0.00035 42.0 13.3 128 901-1054 47-178 (321)
100 KOG1129 TPR repeat-containing 83.3 2.7 5.9E-05 49.4 6.9 134 893-1070 264-399 (478)
101 PF10300 DUF3808: Protein of u 83.2 52 0.0011 40.0 17.7 238 816-1132 180-441 (468)
102 COG5191 Uncharacterized conser 82.7 0.88 1.9E-05 53.0 2.7 55 625-683 131-185 (435)
103 PRK15179 Vi polysaccharide bio 82.7 9 0.0002 48.8 11.6 138 630-787 81-221 (694)
104 KOG1492 C3H1-type Zn-finger pr 80.9 0.6 1.3E-05 51.7 0.6 66 472-550 252-318 (377)
105 PF13371 TPR_9: Tetratricopept 80.7 2.3 5E-05 37.0 4.1 57 896-952 6-63 (73)
106 PF09295 ChAPs: ChAPs (Chs5p-A 80.1 5.8 0.00013 47.4 8.3 91 891-989 206-297 (395)
107 KOG4626 O-linked N-acetylgluco 79.7 1.5E+02 0.0032 38.4 19.7 296 622-978 35-342 (966)
108 PF13414 TPR_11: TPR repeat; P 77.7 6.5 0.00014 33.9 5.9 62 888-949 6-69 (69)
109 CHL00033 ycf3 photosystem I as 77.7 13 0.00029 37.8 9.0 90 617-711 15-109 (168)
110 PLN03098 LPA1 LOW PSII ACCUMUL 74.8 33 0.00073 42.0 12.5 101 630-739 70-175 (453)
111 PRK02603 photosystem I assembl 74.7 18 0.0004 37.1 9.2 109 627-740 27-148 (172)
112 COG4783 Putative Zn-dependent 74.5 15 0.00032 45.2 9.5 144 627-805 332-475 (484)
113 PRK10803 tol-pal system protei 73.8 16 0.00034 41.3 9.1 88 899-987 157-248 (263)
114 PF13428 TPR_14: Tetratricopep 73.3 8.2 0.00018 31.7 5.1 41 888-928 4-44 (44)
115 KOG1126 DNA-binding cell divis 70.6 5 0.00011 50.3 4.6 77 626-707 480-556 (638)
116 KOG2376 Signal recognition par 68.8 2.7E+02 0.0059 35.8 18.3 214 756-981 226-483 (652)
117 KOG1258 mRNA processing protei 67.2 9.8 0.00021 47.5 6.1 61 1216-1278 68-128 (577)
118 PF13431 TPR_17: Tetratricopep 66.8 5.6 0.00012 31.7 2.7 29 663-691 2-30 (34)
119 PRK10153 DNA-binding transcrip 66.7 24 0.00053 43.5 9.3 137 629-783 331-482 (517)
120 PF13431 TPR_17: Tetratricopep 65.3 5.5 0.00012 31.7 2.4 32 941-976 2-33 (34)
121 COG4783 Putative Zn-dependent 64.7 84 0.0018 39.0 12.9 118 900-1061 321-439 (484)
122 PRK02603 photosystem I assembl 59.6 46 0.001 34.2 8.5 78 887-968 37-118 (172)
123 KOG3060 Uncharacterized conser 58.9 27 0.00058 40.4 7.1 107 623-745 142-251 (289)
124 KOG1129 TPR repeat-containing 58.7 77 0.0017 38.1 10.8 57 850-921 270-326 (478)
125 PF12862 Apc5: Anaphase-promot 57.7 83 0.0018 30.0 9.2 75 965-1070 7-81 (94)
126 PF12895 Apc3: Anaphase-promot 57.3 10 0.00022 34.4 3.0 77 900-981 4-83 (84)
127 KOG1174 Anaphase-promoting com 57.1 4.9E+02 0.011 32.7 19.3 416 748-1278 91-520 (564)
128 COG5107 RNA14 Pre-mRNA 3'-end 56.5 18 0.0004 44.4 5.6 71 1214-1289 141-231 (660)
129 CHL00033 ycf3 photosystem I as 56.2 63 0.0014 32.9 8.7 94 887-980 37-137 (168)
130 PF03704 BTAD: Bacterial trans 55.8 19 0.00041 35.6 4.8 37 655-691 77-113 (146)
131 PF00515 TPR_1: Tetratricopept 53.9 23 0.00049 27.0 3.9 33 636-673 2-34 (34)
132 KOG3785 Uncharacterized conser 49.7 33 0.00072 41.3 6.2 83 625-716 48-145 (557)
133 KOG0547 Translocase of outer m 47.4 90 0.0019 39.1 9.3 154 897-1063 406-570 (606)
134 PF12895 Apc3: Anaphase-promot 47.3 31 0.00067 31.3 4.4 80 850-943 3-83 (84)
135 PRK14720 transcript cleavage f 47.2 6.6E+02 0.014 34.0 17.5 253 631-953 27-294 (906)
136 KOG0543 FKBP-type peptidyl-pro 45.9 67 0.0014 39.0 7.9 132 850-988 222-358 (397)
137 PF00515 TPR_1: Tetratricopept 44.9 39 0.00084 25.7 4.0 29 1032-1060 3-31 (34)
138 PRK14720 transcript cleavage f 44.2 2.4E+02 0.0053 37.7 13.1 142 891-1074 37-197 (906)
139 PF13174 TPR_6: Tetratricopept 43.5 44 0.00095 24.7 4.1 30 889-918 4-33 (33)
140 PF12569 NARP1: NMDA receptor- 42.2 5.1E+02 0.011 32.6 14.9 71 1179-1273 319-389 (517)
141 PRK10866 outer membrane biogen 40.4 1.3E+02 0.0027 33.7 8.7 65 899-964 46-114 (243)
142 KOG1155 Anaphase-promoting com 39.4 33 0.00071 42.4 4.2 113 654-783 345-461 (559)
143 PRK10153 DNA-binding transcrip 37.5 71 0.0015 39.6 6.7 93 631-730 416-510 (517)
144 KOG1840 Kinesin light chain [C 37.1 5.1E+02 0.011 32.7 13.7 139 887-1058 327-478 (508)
145 KOG1914 mRNA cleavage and poly 34.4 61 0.0013 40.8 5.4 85 625-717 10-95 (656)
146 KOG0128 RNA-binding protein SA 33.7 2E+02 0.0044 38.0 9.8 163 628-826 339-516 (881)
147 PF07719 TPR_2: Tetratricopept 33.7 75 0.0016 23.7 4.0 28 1032-1059 3-30 (34)
148 TIGR01987 HI0074 nucleotidyltr 32.5 2.6E+02 0.0056 28.9 8.7 82 653-734 2-110 (123)
149 PF04733 Coatomer_E: Coatomer 31.9 1.5E+02 0.0032 34.2 7.7 91 886-981 133-226 (290)
150 PF08631 SPO22: Meiosis protei 31.8 2.8E+02 0.0061 31.3 9.7 99 850-949 50-152 (278)
151 PF06552 TOM20_plant: Plant sp 31.1 98 0.0021 34.3 5.8 71 616-686 5-82 (186)
152 PF12854 PPR_1: PPR repeat 30.3 51 0.0011 26.3 2.7 20 759-778 12-31 (34)
153 KOG0547 Translocase of outer m 30.3 3.4E+02 0.0073 34.5 10.5 84 888-977 328-415 (606)
154 COG4700 Uncharacterized protei 29.9 3E+02 0.0066 31.3 9.2 95 887-986 126-223 (251)
155 PF12688 TPR_5: Tetratrico pep 29.7 93 0.002 31.6 5.0 67 630-701 33-102 (120)
156 PRK10866 outer membrane biogen 29.6 1.9E+02 0.0041 32.3 7.9 91 850-952 46-158 (243)
157 cd02679 MIT_spastin MIT: domai 28.8 46 0.00099 32.0 2.5 18 78-95 26-43 (79)
158 PRK10803 tol-pal system protei 26.8 2.8E+02 0.006 31.7 8.6 62 891-952 186-251 (263)
159 KOG1914 mRNA cleavage and poly 26.5 3.7E+02 0.008 34.5 10.0 92 886-981 367-460 (656)
160 KOG1840 Kinesin light chain [C 26.3 5.4E+02 0.012 32.5 11.5 120 656-783 348-479 (508)
161 PF14561 TPR_20: Tetratricopep 25.5 2.5E+02 0.0055 27.2 6.9 59 621-684 8-68 (90)
162 PRK04841 transcriptional regul 25.2 8.6E+02 0.019 31.3 13.4 139 889-1061 413-562 (903)
163 PRK15338 type III secretion sy 25.1 4.1E+02 0.0089 32.4 9.9 203 623-835 110-343 (372)
164 smart00028 TPR Tetratricopepti 25.0 1E+02 0.0023 20.5 3.2 27 1033-1059 4-30 (34)
165 PF07719 TPR_2: Tetratricopept 24.8 1.6E+02 0.0035 21.9 4.4 33 636-673 2-34 (34)
166 KOG0553 TPR repeat-containing 23.9 1.4E+02 0.0031 35.3 5.7 52 623-679 137-188 (304)
167 COG2956 Predicted N-acetylgluc 23.7 95 0.0021 37.3 4.4 55 650-704 190-244 (389)
168 KOG2003 TPR repeat-containing 23.1 6E+02 0.013 32.1 10.7 123 635-780 544-686 (840)
169 KOG0994 Extracellular matrix g 23.0 1.2E+02 0.0025 41.3 5.3 53 45-97 1411-1463(1758)
170 PF13525 YfiO: Outer membrane 22.8 3.4E+02 0.0073 29.2 8.0 90 849-950 18-122 (203)
171 KOG1173 Anaphase-promoting com 22.8 4.5E+02 0.0098 33.7 9.9 117 900-1062 259-378 (611)
172 PF13281 DUF4071: Domain of un 22.7 8.6E+02 0.019 29.7 11.9 175 887-1063 143-338 (374)
173 COG2956 Predicted N-acetylgluc 22.2 1.5E+03 0.033 27.8 16.0 239 691-981 23-274 (389)
174 KOG4234 TPR repeat-containing 22.0 3.7E+02 0.008 31.0 8.1 94 849-952 108-202 (271)
175 smart00777 Mad3_BUB1_I Mad3/BU 21.8 4.6E+02 0.0099 27.3 8.3 88 675-778 23-123 (125)
176 COG4235 Cytochrome c biogenesi 21.1 5.8E+02 0.013 30.2 9.8 124 653-787 135-260 (287)
177 PLN03098 LPA1 LOW PSII ACCUMUL 20.8 1.3E+02 0.0028 37.3 4.8 66 668-734 69-141 (453)
178 KOG1128 Uncharacterized conser 20.6 4.6E+02 0.01 34.5 9.6 169 851-1076 401-597 (777)
179 PF13176 TPR_7: Tetratricopept 20.3 1.7E+02 0.0037 23.3 3.9 29 1033-1061 2-30 (36)
180 PF08311 Mad3_BUB1_I: Mad3/BUB 20.2 3.2E+02 0.007 27.8 6.8 106 621-732 5-126 (126)
181 KOG1128 Uncharacterized conser 20.1 7.4E+02 0.016 32.8 11.1 216 620-867 504-727 (777)
182 PF09976 TPR_21: Tetratricopep 20.1 1.9E+02 0.0042 29.0 5.2 82 850-944 62-144 (145)
No 1
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-51 Score=469.29 Aligned_cols=653 Identities=16% Similarity=0.154 Sum_probs=506.8
Q ss_pred CccccccccccccccccccCCCccccceeeeccccccCCCCCchhhhhcccccCCCCCCCCCCCcccccccCccccCCCc
Q 000770 456 PDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGT 535 (1294)
Q Consensus 456 ~~~t~~~~~~~~~s~t~s~~~dp~~plc~fel~g~Cn~~~c~wQH~~d~~~~~~~~h~~s~~~~~q~~~s~~~~~~n~~t 535 (1294)
-+++++.+ +..+.+.+++|.|.++.|.|.++|+||+++|-|||..|+++.. ..||++++|++.+++ |.
T Consensus 31 ~~~g~es~--d~~~~~qsn~I~P~~~p~tF~~t~~~~p~~~d~~~it~~~ls~---------~~F~~~~~~~~sl~~-~a 98 (753)
T KOG4839|consen 31 YYRGKESL--DLSSVSQSNMIEPDQCPCTFDLTGTCNPDDCDWQHITDYTLSR---------KLFQDILSYNLSLIG-CA 98 (753)
T ss_pred cccccccC--CCccccccccCCCccCCcccccccCCCCcccccccccccccCh---------hhhhhhhhcChhhhc-Cc
Confidence 35666666 8899999999999999999999999999999999999999999 599999999999999 66
Q ss_pred cccCcccccCCC-cc-----eeccccccccccchhhhh-------------hhccccccccccceeecccccCCCCCccc
Q 000770 536 KLSKGHDILTPP-TY-----IVGLDILKADSYQYQSVI-------------ARRHGLCWQKCLSVSLAISSIYPKDLPAD 596 (1294)
Q Consensus 536 ~~s~~~~i~~~P-tY-----~Vg~d~m~~D~~~~~~V~-------------a~~~~q~Wqk~fs~s~a~s~~~~r~lp~D 596 (1294)
+.++...++-.- +| .++.|+|.+|++..+.|. +.|+.+.|++.|. .=|++.+ .++.|
T Consensus 99 ~t~~~~~~taSSektvsK~~~~~e~~~~~n~nk~~~~s~~~~ss~~~~~~q~~Kd~r~~K~t~~-rrp~~~s---sdT~~ 174 (753)
T KOG4839|consen 99 ETSTNEEITASSEKTVSKLFGVNEDRMSMNQNKVLLVSNINESSGHTPPFQTYKDKRKWKPTFW-RRPISDS---SDTSD 174 (753)
T ss_pred ccCCccccccchhhhHHhhhCCchhhhccchHHHHHHHhhhhcccCCCCccchhhhccCCCccc-ccccccc---cccch
Confidence 777777666544 33 399999999999999776 7789999998876 2111111 11212
Q ss_pred c----------ccCC-CCce-----EEccCcccccchhhhhhhHHh---hhhhccccHHHHHHHHHHHhhhccch-HHHH
Q 000770 597 L----------SLIG-DGRI-----ECIGSWNRQSSFFRSRNGVLN---KLKQVELSNEQCVEMALLILNQDANK-LEGM 656 (1294)
Q Consensus 597 ~----------~~~g-D~~i-----~v~~~~~rq~s~f~~~~di~n---~vle~p~D~elwlkLAl~~Lnq~~n~-~e~l 656 (1294)
+ .+-| |-.. .|+.+.++ |--++|++++ -|+++|.-+|||++.|+++|+++++- ++.+
T Consensus 175 ~e~se~pkk~~~~s~~~~~~p~~D~~vt~~~~~---~~ne~d~~~~le~gV~~N~s~~~l~~ks~v~~l~~~eG~~SsS~ 251 (753)
T KOG4839|consen 175 EEQSEGPKKYAFQSENQINVPALDTVVTPDDVR---YTNETDDIANLEAGVLENPSHVQLWLKSAVKYLNQNEGECSSSL 251 (753)
T ss_pred hcccccchhhhccCcccccCccccceecccccc---cccchhHHHhhccccccChHHHhhccchhhhhhhhhcCccchhh
Confidence 1 1111 1111 26788888 6558888877 89999999999999999999997665 8888
Q ss_pred HH----HHHHH--HHHhhcCC-CChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHH
Q 000770 657 KK----ALSLL--SRALEADP-TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYD 729 (1294)
Q Consensus 657 ~~----AL~vL--SRALEan~-~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~ 729 (1294)
++ +||++ +|+||.+. ++++.|+|||.||. |+++..++||.+||++. +.|+-||.|+.-+++|..+.++|.
T Consensus 252 ~sqgsl~ln~~kaaR~le~~KiD~~~s~~h~L~~~n--Gt~~v~~e~~n~~~~~l-p~~~~~~~~~~p~st~~p~~~v~e 328 (753)
T KOG4839|consen 252 DSQGSLALNVLKAARALENNKIDNPESWCHYLRLFN--GTKDVVQEMCNTAVEYL-PDYQSFWTFLHPESTFEPKDYVCE 328 (753)
T ss_pred hccccceeehhhhhhHHhhccCCCccchhheeeccC--CChhHHHHhhhhhhhcc-cccccchhccCCCCcCCcchhhHh
Confidence 98 99999 99999999 99999999999997 89999999999999995 999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcch
Q 000770 730 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 809 (1294)
Q Consensus 730 raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci 809 (1294)
+++.++++.+-.+.. ...|..+|+..+.-.+.-.++|+-..|+++++++.+.+.. .+ +.+.|-..|+|+
T Consensus 329 ~~~~~~~g~dk~~~~--~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~~r------~~---~~~~Li~rd~~l 397 (753)
T KOG4839|consen 329 RMLEFLMGADKQETS--NILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSANR------GI---VAEYLITRDRCL 397 (753)
T ss_pred hhhhhhhccchhhhH--HHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHhhh------ch---hhhhheehhhhh
Confidence 999999985543211 1123333333333333334899999999988888887665 23 578999999999
Q ss_pred HHHHHHH-HHHhccCch-hHhhhcc------cccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCcccccccc
Q 000770 810 FWVCCVY-LVIYRKLPD-AVLQLLE------CEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNL 881 (1294)
Q Consensus 810 ~WL~cih-Lv~f~~LP~-~i~d~~e------~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~l 881 (1294)
+|..+++ .++|..||. .|.|+.+ ++-|-+..+|+++++++++++ +.++++.|.+.|. +|++.-+++|
T Consensus 398 ~wp~~~pts~~~~~Lpsv~~a~~sn~~~sh~~n~E~vv~~~~~~~~v~~np~-~s~~gas~s~a~t----~~s~~te~rL 472 (753)
T KOG4839|consen 398 AWPAYIPTSIEFNILPSVKFADPSNDNPSHIVNTESVVMPWQAVQDVKTNPD-LSAVGASASKACT----DESLATEERL 472 (753)
T ss_pred cccccCCcchhhcccCCCcccccccCCcccccccceeccCCchhhhhccCCc-hhhccccccccCC----CcchhHHHHH
Confidence 9999999 999999999 8888877 577889999999999999999 9999999999999 9999999999
Q ss_pred chhhhhHhhHHHHHHH---hhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccC-Ccc-HHHHHHHHh--cCCCCCCc
Q 000770 882 RSAHCFAVNHIWCMAV---LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG-DLS-SVGFEEALI--KWPKGVPG 954 (1294)
Q Consensus 882 r~aq~lalN~I~c~~a---le~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~-~~~-~~~Feeal~--~wPKea~G 954 (1294)
..+.++.+++|..... .++.+++.++|..++|.||-.|+++.+++.++-.-+. +.. -.+|..+|+ +.|+++|
T Consensus 473 eap~l~~te~iav~heEHpa~~~~~~~d~l~~l~Es~~g~c~~~etlV~~~~e~~~~~~~R~kv~L~~~eGk~n~q~~p- 551 (753)
T KOG4839|consen 473 EAPLLLYTEMIAVHHEEHPAERYEAAMDLLKSLLESCPGNCQLLETLVALYLETNQHDKARAKVWLTAFEGKKNPQNAP- 551 (753)
T ss_pred hccccCccccccchhhhhhHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhhhcchhhhhhHHHHHhhhccCCccCCc-
Confidence 9999999999999999 9999999999999999999999999888877732222 111 126677777 6777776
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHH-HHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcch-----h
Q 000770 955 IQCIWNQYVEYALQNGRHDFAAELMD-RWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQM-----D 1028 (1294)
Q Consensus 955 iQ~IWnQy~e~aLq~~~~d~A~~il~-rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~-----D 1028 (1294)
.-+..|.++++++-+ +.-.+.++ -+-.++++.+.....-.|-+.. ....+|+.+++-.++-+.++. -
T Consensus 552 --~e~~~~~~sI~ens~-~~d~~s~rilss~s~~~Pgf~~t~~~dkvp~----l~~~~gP~yi~~~~~y~~r~~~~f~e~ 624 (753)
T KOG4839|consen 552 --VEYHMCKFSILENSG-DNDLPSLRILSSASFFKPGFEKTNNLDKVPY----LLNIPGPIYIPSRLCYGNRDDDMFNEQ 624 (753)
T ss_pred --ccchhHHHHHHhccc-cccchhhhhhhhhhhcCCcccccchhhhcch----hhcCCCchhhhhhhcccchhhHHHhhh
Confidence 555577778888844 54444444 3445566666555444444331 233455555553334445554 4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-CcCCCCCCCchHHHHHHHhHHHHhhccCc
Q 000770 1029 VMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLI-NESEPKEGAPISWQLKLLNSYLDRARSLP 1107 (1294)
Q Consensus 1029 ~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~~-~~~~~~~d~~~~~~~~ll~~yL~~~~~lp 1107 (1294)
++|-|++||+++-|+.+.-|..-|||.|.| .=...+-.||.|..|.+. ...+++.+.+...+. ++
T Consensus 625 Vpy~~~i~~y~~~lk~~p~~~~c~YE~~gg--rCn~d~c~w~hf~df~~~g~~~~~~~~~~r~~~~---td--------- 690 (753)
T KOG4839|consen 625 VPYLWLIYCYCHPLKSSPKETVCAYEAAGG--RCNIDQCIWMHFLDFANNGRAAGSRNKVQRFKFF---TD--------- 690 (753)
T ss_pred hhhHhhhheecccccCCcchhHHHHHhccC--ccCchhhhHHHHHHhhcccchhhhcCchhhhccc---ch---------
Confidence 788899999999999999999999999988 334456779999999987 666777666554433 22
Q ss_pred ccccchhHhhhcCCchhHHHHHhhccCCCC-CchhhHHHHHHhhhCCCCccccccCcchhHHHHHHHHhhcCchhHHHH
Q 000770 1108 YLKLLPRQFINNIERPRLQQLIDNLLSPVS-SDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAF 1185 (1294)
Q Consensus 1108 ~~~pLsrrfl~~I~k~rv~~li~~~l~P~s-sd~sl~N~Vle~~yg~SllPq~~~~~K~lvdfvE~imE~~P~Ny~LAL 1185 (1294)
+..|+..+++ +.+|..|+|+. -.|.|| +|. +++.+++|.+.| .| ..++.+.+||+|..+|+
T Consensus 691 ----~v~~~s~k~~-----~~ldivfs~td~~s~~~~-~vd--f~~~~~v~~~~H-~~----~w~~~~s~~pa~s~s~~ 752 (753)
T KOG4839|consen 691 ----LVNRCSVKVP-----ARLDIVFSSTDYWSYEFH-RVD--FFYLSCVPKTQH-SK----TWERFCSVMPANSGSAL 752 (753)
T ss_pred ----hhhhcccccc-----cccccccccccccccccc-eee--EEEEeeeeHHHH-hH----HHHHHHhhccccccccc
Confidence 3444544433 44779999998 348999 566 345888998876 34 45566699999998876
No 2
>KOG4839 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.6e-47 Score=435.81 Aligned_cols=445 Identities=16% Similarity=0.105 Sum_probs=354.9
Q ss_pred ccccccccccCCCCCccccCCCcchhhhHhhhhHhhhHHHHHHHHhhhcchHhhhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 000770 23 VHQVNTASLGNFSGNGNVSGNSNVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASCTKLYR 102 (1294)
Q Consensus 23 ~~~~~~~~l~n~~g~~nv~~h~n~d~~sl~~mEE~~dkELEeAQehRr~cEieER~AlkaYrkAQraLieAnarC~~Lyr 102 (1294)
|++..+..+.+++|.+.++ .+++|.+++|.|+-.||+++++|+..|..||++|||++.|+++||++++||+||+++|-
T Consensus 304 lp~~~~~~~~~~p~st~~p--~~~v~e~~~~~~~g~dk~~~~~~~s~~llE~~~~n~~~~~~~~~rs~~lA~lrnae~~~ 381 (753)
T KOG4839|consen 304 LPDYQSFWTFLHPESTFEP--KDYVCERMLEFLMGADKQETSNILSFQLLEALLFNVQLHIFTGRRSSALAILRNAEKSA 381 (753)
T ss_pred ccccccchhccCCCCcCCc--chhhHhhhhhhhhccchhhhHHHHHHHHhhhchhhhhhhhhhhhhhHHHHHHHhhHHHh
Confidence 4556666777899999988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceEeecCccccccccccccCcccccccCcCCcccccc----CCccccccCccCCCCCCCCCcccccCCCC
Q 000770 103 QRELCSARFRSFVMDDSNLLWSSGQHETLGNEFDLSKHVSGNMHLAP----TSTHQMQSGYVGYNQGGYDSSMQCINGDL 178 (1294)
Q Consensus 103 kRE~~Sa~~~s~~~~~s~l~~~~~~~~~~~~g~~~~~~~~~~~~l~p----~s~~~~q~~y~~~n~p~~Ds~~~~~~~~~ 178 (1294)
+|||. ..+||++|+.|+||-+.+ --+|++-++-+ .++. .++|...+||+|.
T Consensus 382 ~r~~~---~~~Li~rd~~l~wp~~~p--ts~~~~~Lpsv----~~a~~sn~~~sh~~n~E~vv~---------------- 436 (753)
T KOG4839|consen 382 NRGIV---AEYLITRDRCLAWPAYIP--TSIEFNILPSV----KFADPSNDNPSHIVNTESVVM---------------- 436 (753)
T ss_pred hhchh---hhhheehhhhhcccccCC--cchhhcccCCC----cccccccCCcccccccceecc----------------
Confidence 99944 899999999999995522 25565555331 1111 1568888888876
Q ss_pred CCcCccccCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCccCCCCchhHhhhhcCCCCCCCcchhhhhhhhhhcc
Q 000770 179 QNFSHEHENGQNLGSEPCSEQDASTSELLPRKSKNALNGISPQSNELMVSADEEEEACQLDLESVQPNFEYQQKDQIAEG 258 (1294)
Q Consensus 179 ~~~~~~~~~g~nlgsepc~e~dastsep~~~r~~~~~~~~~sps~~~~~sa~~~~e~~~~~~e~~~~~~~~~~~~~~~~~ 258 (1294)
..+.+..-|+|+|. +..+||++..++..++....++++| +..+ .|.++++||.|+
T Consensus 437 -~~~~~~~v~~np~~---s~~gas~s~a~t~~s~~te~rLeap-----~l~~--te~iav~heEHp-------------- 491 (753)
T KOG4839|consen 437 -PWQAVQDVKTNPDL---SAVGASASKACTDESLATEERLEAP-----LLLY--TEMIAVHHEEHP-------------- 491 (753)
T ss_pred -CCchhhhhccCCch---hhccccccccCCCcchhHHHHHhcc-----ccCc--cccccchhhhhh--------------
Confidence 44556677999995 8889999999999999999999999 3444 577888887322
Q ss_pred ccccccccccccccccCCCChhhHHhhhhhHHHHHhhcccccCCCCCccCcccccccccccccccccccccCCCCCCccc
Q 000770 259 RQISTDYRHNNKLSAVSSQDPLLLEATLRSELFARLGMRTFSKDSGSCFNVEPSVEQRADNDIGSDKMQMSNGSVPSSGE 338 (1294)
Q Consensus 259 ~~i~~~~~~n~~~s~~~~qd~lllEA~lrS~Lf~R~g~r~~~~n~~~~~~~e~~~e~g~e~~~g~e~~q~~~g~~~~se~ 338 (1294)
|.+|+.+|+|||++..+..+ .|++.|+.+++++| +|.+.+|+.- +=|-+
T Consensus 492 -------------------------a~~~~~~~d~l~~l~Es~~g-~c~~~etlV~~~~e--~~~~~~~R~k--v~L~~- 540 (753)
T KOG4839|consen 492 -------------------------AERYEAAMDLLKSLLESCPG-NCQLLETLVALYLE--TNQHDKARAK--VWLTA- 540 (753)
T ss_pred -------------------------HHHHHHHHHHHHHHHhcCCc-cchhHHHHHHHHhh--hcchhhhhhH--HHHHh-
Confidence 89999999999999999887 99999999999998 7888887661 11111
Q ss_pred ccccccCCCCCcccccccCCccccccchhhcccccccccccCCCCCCCcccccccccccccchhhhhhhhccchhhhhhh
Q 000770 339 QSQQHDIGGTDKPERRIQEAPFQIQDKCLVEKGLLEFHSTYHSKGNKFPTTMNHSTSVLLSPPILRGAFGHLKSELCIAL 418 (1294)
Q Consensus 339 ~~n~~dl~gn~~~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~s~~~~~~~~~~~~~~v~~~p~~~rsa~~h~k~~~~~~~ 418 (1294)
++ |....+..+.++++.. .+|++|.. +..+|+.- ...++.++.|.||++..|.|+ | ++
T Consensus 541 ----~e--Gk~n~q~~p~e~~~~~---~sI~ens~---------~~d~~s~r-ilss~s~~~Pgf~~t~~~dkv--p-~l 598 (753)
T KOG4839|consen 541 ----FE--GKKNPQNAPVEYHMCK---FSILENSG---------DNDLPSLR-ILSSASFFKPGFEKTNNLDKV--P-YL 598 (753)
T ss_pred ----hh--ccCCccCCcccchhHH---HHHHhccc---------cccchhhh-hhhhhhhcCCcccccchhhhc--c-hh
Confidence 22 3323333444444333 66776654 45555433 456788999999999999999 6 77
Q ss_pred cccCCCcCCCCCccccchhhhccccccchhhhhccCCCccccccccccccccccccCCCccccceeeeccc-cccCCCCC
Q 000770 419 SNQSGNQHNHGRNFEIEEVACVNSDKTQACYLIANSKPDIVKGYVGKEMGSYTCNLAIDPLWPLCMYELRG-KCNNDECP 497 (1294)
Q Consensus 419 ~~~~~~~~k~~~~~~~~~~~~~~sd~a~~~~~~~~~~~~~t~~~~~~~~~s~t~s~~~dp~~plc~fel~g-~Cn~~~c~ 497 (1294)
++..|+ .|+.++. |- + +..+.+... ++. |+..++.|++.+++||+||+||||+|| +||+|+|.
T Consensus 599 ~~~~gP------~yi~~~~-~y-~-~r~~~~f~e------~Vp-y~~~i~~y~~~lk~~p~~~~c~YE~~ggrCn~d~c~ 662 (753)
T KOG4839|consen 599 LNIPGP------IYIPSRL-CY-G-NRDDDMFNE------QVP-YLWLIYCYCHPLKSSPKETVCAYEAAGGRCNIDQCI 662 (753)
T ss_pred hcCCCc------hhhhhhh-cc-c-chhhHHHhh------hhh-hHhhhheecccccCCcchhHHHHHhccCccCchhhh
Confidence 888665 2222111 11 1 455555553 222 456899999999999999999999999 99999999
Q ss_pred chhhhhcccccCCCCCCCCCCCcccccccCccccCCCccccCcccccCCCcceeccccccccccchhhhhhhcccccccc
Q 000770 498 WQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYIVGLDILKADSYQYQSVIARRHGLCWQK 577 (1294)
Q Consensus 498 wQH~~d~~~~~~~~h~~s~~~~~q~~~s~~~~~~n~~t~~s~~~~i~~~PtY~Vg~d~m~~D~~~~~~V~a~~~~q~Wqk 577 (1294)
|||.+|+.++. .|+.+-+.+...+..-++.+.+.. |++...+|+.-|||.++.+.||+|.+.|..|++.+|++.|.+
T Consensus 663 w~hf~df~~~g--~~~~~~~~~~r~~~~td~v~~~s~-k~~~~ldivfs~td~~s~~~~~vdf~~~~~v~~~~H~~~w~~ 739 (753)
T KOG4839|consen 663 WMHFLDFANNG--RAAGSRNKVQRFKFFTDLVNRCSV-KVPARLDIVFSSTDYWSYEFHRVDFFYLSCVPKTQHSKTWER 739 (753)
T ss_pred HHHHHHhhccc--chhhhcCchhhhcccchhhhhccc-ccccccccccccccccccccceeeEEEEeeeeHHHHhHHHHH
Confidence 99999999986 566666688888999999998844 688889999999999999999999999999999999999999
Q ss_pred ccceeecccccCCC
Q 000770 578 CLSVSLAISSIYPK 591 (1294)
Q Consensus 578 ~fs~s~a~s~~~~r 591 (1294)
+|+++.|-++++.|
T Consensus 740 ~~s~~pa~s~s~~r 753 (753)
T KOG4839|consen 740 FCSVMPANSGSALR 753 (753)
T ss_pred HHhhcccccccccC
Confidence 99999998888765
No 3
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.58 E-value=1.3e-14 Score=160.86 Aligned_cols=163 Identities=24% Similarity=0.277 Sum_probs=137.7
Q ss_pred hhhHHhhhhhccccHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCc
Q 000770 621 RNGVLNKLKQVELSNEQCVEMALLILNQ-------DANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGK 693 (1294)
Q Consensus 621 ~~di~n~vle~p~D~elwlkLAl~~Lnq-------~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~ 693 (1294)
+..+..+|.++|.|+++||+++-.--.- ..+...-.++-|++|.|||++||.++.||+.||.++.+.-..+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4456779999999999999998543222 122245678999999999999999999999999999999988888
Q ss_pred cchHHHhhhcCCccHHHHHHHHhhccC------ccchHHHHHHHHHHHhccccCC---CCCccchhhHHHHHHHHHHHHH
Q 000770 694 DDMFSYSVKHNEGSYALWLMYINSRTP------LNHRLDAYDAALSVLCRCASAS---DGDEMHASACILDLFLQMLQCF 764 (1294)
Q Consensus 694 ~eM~e~AVq~~~~SY~LWL~YLnsr~~------fddr~~ay~raL~~L~~~aSa~---~~d~~~~SA~iLDl~LQml~~L 764 (1294)
..+++.+++.+|.+|.||..||+.+.+ +++-..+|.++|..|....++. ..+.....-.+|++|++++.++
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999643 6678899999999999977654 2222333556999999999999
Q ss_pred hhcccHHHHHHHHHhhccc
Q 000770 765 CMSGNTEKAIQRISRLLIP 783 (1294)
Q Consensus 765 c~SGn~~kAI~~l~~lL~~ 783 (1294)
..+|-++.|++++|+++.-
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHCCchHHHHHHHHHHHHH
Confidence 9999999999999999876
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.21 E-value=1.3e-06 Score=102.02 Aligned_cols=307 Identities=15% Similarity=0.005 Sum_probs=179.8
Q ss_pred hHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhh
Q 000770 623 GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 702 (1294)
Q Consensus 623 di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq 702 (1294)
.+..-+...|.+.+.|+.+|..++.+. ..++|+.++.++++.+|.+...|.....+|...+..++..+.+..|++
T Consensus 147 ~~~~a~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 221 (899)
T TIGR02917 147 SYEQALAIDPRSLYAKLGLAQLALAEN-----RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221 (899)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 334556778999999999999888765 468899999999999999999999999999999998888899999999
Q ss_pred cCCccHHHHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHh
Q 000770 703 HNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 779 (1294)
Q Consensus 703 ~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~ 779 (1294)
..|.+-.+|...+.. ...++.....+++++... +.. .. ..+.........|+.++|+..+..
T Consensus 222 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~-----~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 222 LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-------PNS---PL-----AHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC---ch-----HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999888887666554 245566666666655431 111 00 111123334477999999998887
Q ss_pred hccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCC-CCCCCcchHHHHHHH
Q 000770 780 LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWP-PVQLEDDEKQRAIKL 858 (1294)
Q Consensus 780 lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~-~v~l~~~~~~~llkL 858 (1294)
+++..... .+....++.+...+..-+.++..+.- .....|.... ...+- .........+.++++
T Consensus 287 ~l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~----~~~~~p~~~~----------~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 287 ALKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQ----ILKYAPNSHQ----------ARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred HHHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHH----HHHhCCCChH----------HHHHHHHHHHHCCCHHHHHHH
Confidence 77653221 11000111111111111111111000 0000111000 00000 001112344555555
Q ss_pred HHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCcc
Q 000770 859 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLS 937 (1294)
Q Consensus 859 fe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~ 937 (1294)
++.+.+... .+ .....++..++.....++.|..++++.++..|.........+.++ ..+....+
T Consensus 352 ~~~~~~~~~----------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 352 LSPALGLDP----------DD-----PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHHHhcCC----------CC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Confidence 555543321 00 013345556666667777777777777777777777666666665 33344566
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 000770 938 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 983 (1294)
Q Consensus 938 ~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf 983 (1294)
...|+.++...|.... .+...+...++.|..+.|.+++.++.
T Consensus 417 ~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 417 IADLETAAQLDPELGR----ADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHhhCCcchh----hHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777776665543 44555555666667777777766643
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.10 E-value=3.6e-06 Score=98.49 Aligned_cols=526 Identities=15% Similarity=0.066 Sum_probs=257.5
Q ss_pred hhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCC
Q 000770 626 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 626 n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~ 705 (1294)
..+...|.+.+.|..++..++... ..++|+.++.++++.+|.+...|...-.+|...+..++..+.++.+++..|
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALG-----DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345667888888888887776543 357888888888998999888888888888888887777788888888876
Q ss_pred ccHHHHHHHHhhc---cCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhcc
Q 000770 706 GSYALWLMYINSR---TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 782 (1294)
Q Consensus 706 ~SY~LWL~YLnsr---~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~ 782 (1294)
..-..+...+..- ..++....++.+++. ..+.. .++...+..++...|+.++|++.+..++.
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEK-------KQPDN--------ASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 5544444333321 333334444444322 11111 12345567777788888888888777765
Q ss_pred ccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcc--ccccccc-ccC---CCCCCCcchHHHHH
Q 000770 783 PATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE--CEKELFA-IDW---PPVQLEDDEKQRAI 856 (1294)
Q Consensus 783 ~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e--~~KElf~-I~W---~~v~l~~~~~~~ll 856 (1294)
...+ .+ . ..+.+.-+|. -..-++.....++ +...+-. ..| -..-....+.+.++
T Consensus 494 ~~~~--~~---~-------------~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 494 IEPD--FF---P-------------AAANLARIDI--QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred hCCC--cH---H-------------HHHHHHHHHH--HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4222 10 0 0111111111 0011111111100 0000000 000 00000123445555
Q ss_pred HHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCC
Q 000770 857 KLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGD 935 (1294)
Q Consensus 857 kLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~ 935 (1294)
.+|+.+++.-. . + ......++.++.....++.|..+++++++.+|...+....+++++ +.+..+
T Consensus 554 ~~~~~~~~~~~-----~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 554 AWLEKAAELNP-----Q-----E-----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHHHhCc-----c-----c-----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 56655544311 0 0 012334555555666666666666666666666666666666555 333345
Q ss_pred ccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCC
Q 000770 936 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1015 (1294)
Q Consensus 936 ~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s 1015 (1294)
.+...|+.++...|.+.. .|+.++....+.|+.+.|..++.+-.................... .+-...+...
T Consensus 619 ~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~ 691 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSAL----ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA---AKRTESAKKI 691 (899)
T ss_pred HHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Confidence 566666666666666553 566666655566666666666544322110000000000000000 0000000000
Q ss_pred CCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcCCCCCCCchHHHHHH
Q 000770 1016 DPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKL 1095 (1294)
Q Consensus 1016 ~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~~~~~~~~~d~~~~~~~~l 1095 (1294)
........ .+....|..+.....-+|+..||...|++++...... ..+.-.+..... .| ...+-.+.
T Consensus 692 ~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~--~g-----~~~~A~~~ 758 (899)
T TIGR02917 692 AKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLA--SG-----NTAEAVKT 758 (899)
T ss_pred HHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHH--CC-----CHHHHHHH
Confidence 00000000 0011122223333355677777777777776654321 111111111110 00 01111222
Q ss_pred HhHHHHhhccCcccccchhHhhhcCCchhHHHHHhhccCCCCCchhhHHHHHHhhhCCCCccccccCcchhHHHHHHHHh
Q 000770 1096 LNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIME 1175 (1294)
Q Consensus 1096 l~~yL~~~~~lp~~~pLsrrfl~~I~k~rv~~li~~~l~P~ssd~sl~N~Vle~~yg~SllPq~~~~~K~lvdfvE~imE 1175 (1294)
+..++. -.+.|....+.+..++. ..++.+.-....+.+++
T Consensus 759 ~~~~l~---------------------------------~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 759 LEAWLK---------------------------------THPNDAVLRTALAELYL-------AQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHH---------------------------------hCCCCHHHHHHHHHHHH-------HCcCHHHHHHHHHHHHH
Confidence 222221 11122333443443332 24556667777888888
Q ss_pred hcCchhHHHHHHHHHhhhccCCCCCCCchhhHHHHHHhhhhhhhhhcCcCCchHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 000770 1176 IVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRA 1255 (1294)
Q Consensus 1176 ~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fWA~s~L~nai~~AiPvapE~vWveAa~~l~~l~~~~~v~~rfyq~A 1255 (1294)
.-|.+...-..++.++.+ ..+ ..++.+.-..+- ..|- ...+|-.-|.++..+...++ +..+|++|
T Consensus 799 ~~p~~~~~~~~l~~~~~~-----~~~--~~A~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~g~~~~-A~~~~~~a 863 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLE-----LKD--PRALEYAEKALK------LAPN-IPAILDTLGWLLVEKGEADR-ALPLLRKA 863 (899)
T ss_pred hCCCCHHHHHHHHHHHHh-----cCc--HHHHHHHHHHHh------hCCC-CcHHHHHHHHHHHHcCCHHH-HHHHHHHH
Confidence 888876655544554433 122 323333332222 2353 33456666666655544444 47899999
Q ss_pred hccccchhhhhhhhhhhhcccCCHHH
Q 000770 1256 LSVYPFSIKLWKCYYDLSKTKGDLNT 1281 (1294)
Q Consensus 1256 lSvyPfs~~LWk~yl~~~ks~G~~~~ 1281 (1294)
+..-|-....+-.+.......|..++
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 99999888888888887788888433
No 6
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=98.70 E-value=4.3e-09 Score=77.64 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=21.2
Q ss_pred cceeeeccc-cccCCCCCchhhh
Q 000770 481 PLCMYELRG-KCNNDECPWQHVK 502 (1294)
Q Consensus 481 plc~fel~g-~Cn~~~c~wQH~~ 502 (1294)
|||+|||+| +|||++|+|||+|
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCCCCCCccccC
Confidence 799999999 9999999999986
No 7
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.64 E-value=3.3e-06 Score=103.94 Aligned_cols=322 Identities=12% Similarity=0.038 Sum_probs=181.5
Q ss_pred HHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 624 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 624 i~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
+.+-+...|.+.+ |..+|..+..+. ..++|+.++.++++.+|.++.+|..|-.++...+..++...+++.+++.
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g-----~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAG-----RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 3445566677777 776666665442 2356777777777777777777777766666554444444455554441
Q ss_pred ---------CCccHHHHHHHHhhcc---Cc---cchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcc
Q 000770 704 ---------NEGSYALWLMYINSRT---PL---NHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSG 768 (1294)
Q Consensus 704 ---------~~~SY~LWL~YLnsr~---~f---ddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SG 768 (1294)
.+....+.+.+..... ++ +.++..|++++...-..+...+ . +...-+-.+-.|...|
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~---~-----~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA---D-----YQRARIDRLGALLARD 251 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch---H-----HHHHHHHHHHHHHHhh
Confidence 1111122221111110 01 2223333333322211111110 0 1111111234456779
Q ss_pred cHHHHHHHHHhhccccCCCCCCcc--ccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcc--ccccccc-ccCC
Q 000770 769 NTEKAIQRISRLLIPATGSNDRHS--LFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE--CEKELFA-IDWP 843 (1294)
Q Consensus 769 n~~kAI~~l~~lL~~a~~sd~p~~--~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e--~~KElf~-I~W~ 843 (1294)
+.+.|++.++.+++... ..|.. ..++++.-.+.. |+.....+. ....+.. ..+.
T Consensus 252 ~~~eA~~~~~~ll~~~~--~~P~~a~~~la~~yl~~g~-------------------~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQ--IIPPWAQRWVASAYLKLHQ-------------------PEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred hHHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHhcCC-------------------cHHHHHHHHHHhhcCCCCCCCCh
Confidence 99999999888877632 12311 112222222333 333333222 0111100 0000
Q ss_pred C-------CCCCcchHHHHHHHHHHHHHhhccccC----CCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHH
Q 000770 844 P-------VQLEDDEKQRAIKLIEMAVNSVELYSN----GESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYI 912 (1294)
Q Consensus 844 ~-------v~l~~~~~~~llkLfe~Av~s~~~~~~----~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyv 912 (1294)
. ........+.++++++.++..-..... -...+.+..+ -...+....+....+++.|+.++++.+
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~----~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL----QGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 112235566667777766654321110 0001111111 133466667778899999999999999
Q ss_pred HhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhh
Q 000770 913 KLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWK 988 (1294)
Q Consensus 913 elyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k 988 (1294)
+..|...+|++..|.++ +.+..+.+...++.++...|.+.. +++..+..+++.++.+.|++++++......+
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999 555569999999999999999986 9999999999999999999999887765543
No 8
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.63 E-value=2.9e-06 Score=101.90 Aligned_cols=392 Identities=16% Similarity=0.126 Sum_probs=248.3
Q ss_pred hHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhh
Q 000770 623 GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVK 702 (1294)
Q Consensus 623 di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq 702 (1294)
=|.|-|.-.|+++-+|+|.|-.- ++-. .=-.||.+|||..|.|+-||-.-..|= ..++..-|.+.|||
T Consensus 337 vvA~Avr~~P~Sv~lW~kA~dLE-~~~~-------~K~RVlRKALe~iP~sv~LWKaAVelE----~~~darilL~rAve 404 (913)
T KOG0495|consen 337 VVANAVRFLPTSVRLWLKAADLE-SDTK-------NKKRVLRKALEHIPRSVRLWKAAVELE----EPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHhCCCChhhhhhHHhhh-hHHH-------HHHHHHHHHHHhCCchHHHHHHHHhcc----ChHHHHHHHHHHHH
Confidence 46788999999999999876431 1112 223588999999999999998776664 55556789999999
Q ss_pred cCCccHHHHHHHHhhccCccchHHHHHHHHHHHhccc-------c-CCCCCccchhhHHHHHHHH---------------
Q 000770 703 HNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCA-------S-ASDGDEMHASACILDLFLQ--------------- 759 (1294)
Q Consensus 703 ~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~a-------S-a~~~d~~~~SA~iLDl~LQ--------------- 759 (1294)
+.|.|-+||+-|.++++.=.-|.+ .+.|=+.|=... . .+-++..+-.-.|+|-.+-
T Consensus 405 ccp~s~dLwlAlarLetYenAkkv-LNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 405 CCPQSMDLWLALARLETYENAKKV-LNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hccchHHHHHHHHHHHHHHHHHHH-HHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 999999999999999765554443 343333322211 0 0112223333334443332
Q ss_pred -HHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccc
Q 000770 760 -MLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELF 838 (1294)
Q Consensus 760 -ml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf 838 (1294)
=.+..=++|-+--.-+++++++.+.-++.+--.+++.|.-.|-. ..|+-+.--||..+-.. +-|+|.++
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k--~~~~~carAVya~alqv--------fp~k~slW 553 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK--RPAIECARAVYAHALQV--------FPCKKSLW 553 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh--cchHHHHHHHHHHHHhh--------ccchhHHH
Confidence 22333367777666678888888877754444456655444432 22333333344443333 33455543
Q ss_pred cccCCCCCC--CcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCc
Q 000770 839 AIDWPPVQL--EDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYP 916 (1294)
Q Consensus 839 ~I~W~~v~l--~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP 916 (1294)
+. .++. .-...+.+.++|+.||.+|- +++ .|-+=+..-.-.-.+.-.|+.++....+-+|
T Consensus 554 lr---a~~~ek~hgt~Esl~Allqkav~~~p--------kae-------~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 554 LR---AAMFEKSHGTRESLEALLQKAVEQCP--------KAE-------ILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HH---HHHHHHhcCcHHHHHHHHHHHHHhCC--------cch-------hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 31 1111 12467889999999999995 112 1222222222222566789999999999999
Q ss_pred chhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcc-----
Q 000770 917 SCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQ----- 990 (1294)
Q Consensus 917 ~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~----- 990 (1294)
.+-||.|+.++|. .++..+-.-.-|-.|.+..|-+. +|+-++.+-=-.++.+.|++++-+=..+|..-.
T Consensus 616 nseeiwlaavKle~en~e~eraR~llakar~~sgTeR-----v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm 690 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFENDELERARDLLAKARSISGTER-----VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM 690 (913)
T ss_pred CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch-----hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence 9999999999999 77777888888999999888887 999999987777789999999865433332111
Q ss_pred ----cccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Q 000770 991 ----YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1066 (1294)
Q Consensus 991 ----~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~ 1066 (1294)
+.+.+..+..++-+ -.|.+-++. -++ .||-|+-..--.|+++-|+..+|+|+.--... .
T Consensus 691 lGQi~e~~~~ie~aR~aY-----~~G~k~cP~---------~ip-LWllLakleEk~~~~~rAR~ildrarlkNPk~--~ 753 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAY-----LQGTKKCPN---------SIP-LWLLLAKLEEKDGQLVRARSILDRARLKNPKN--A 753 (913)
T ss_pred HhHHHHHHHHHHHHHHHH-----HhccccCCC---------Cch-HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--c
Confidence 12222222222111 122222332 123 45548888888899999999999998766544 4
Q ss_pred HHHHHHHHHHh
Q 000770 1067 HCVREHAMLLL 1077 (1294)
Q Consensus 1067 hcwrEya~F~~ 1077 (1294)
-.|.|-.-+-+
T Consensus 754 ~lwle~Ir~El 764 (913)
T KOG0495|consen 754 LLWLESIRMEL 764 (913)
T ss_pred hhHHHHHHHHH
Confidence 56777665553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.60 E-value=0.0014 Score=84.64 Aligned_cols=527 Identities=14% Similarity=0.118 Sum_probs=287.1
Q ss_pred hhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHH----------------HHh
Q 000770 622 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL----------------IFY 685 (1294)
Q Consensus 622 ~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~----------------Ly~ 685 (1294)
+.+.+.+.-.|.|.+++..++...+.+.. .++|+..|.|.++.+|.++..|..+.. ++.
T Consensus 49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~-----~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~ 123 (1157)
T PRK11447 49 QSLYRLELIDPNNPDVIAARFRLLLRQGD-----SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLA 123 (1157)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 45556777799999999888888876643 478999999999999999998854433 677
Q ss_pred cCCCCCCccchHHHhhhcCCccHHHHHHHHhh----ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHH
Q 000770 686 SNTNSVGKDDMFSYSVKHNEGSYALWLMYINS----RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQML 761 (1294)
Q Consensus 686 q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLns----r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml 761 (1294)
+.+.-++....+..+++..|+...+=+.|... ...++.....|++++. ..++. .++-+.+.
T Consensus 124 ~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~-------~~P~~--------~~~~~~LA 188 (1157)
T PRK11447 124 TTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA-------DYPGN--------TGLRNTLA 188 (1157)
T ss_pred hCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH-------hCCCC--------HHHHHHHH
Confidence 77777788889999999988887643333332 2334444444444332 22222 12445677
Q ss_pred HHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHH----HhhcCcCCcchHHHHHHHHHHhccCchhHhhhccccccc
Q 000770 762 QCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDI----LTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKEL 837 (1294)
Q Consensus 762 ~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~I----l~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KEl 837 (1294)
..+...|+.+.|++.+..++..... .....++ +.-+.+.+..+-.+. .|+-. .|.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~-----~~~aa~~~~~~l~~~~~~~~~~~~l~-~~l~~---~p~------------ 247 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAG-----RDAAAQLWYGQIKDMPVSDASVAALQ-KYLQV---FSD------------ 247 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHhccCCChhhHHHHH-HHHHH---CCC------------
Confidence 7778899999999998888654322 0011100 011111221111110 01111 111
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Q 000770 838 FAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPS 917 (1294)
Q Consensus 838 f~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~ 917 (1294)
......+.+.++.+..... ++ . -.+. ..-.++....+++.|+..+++.++.+|.
T Consensus 248 -----------~~~~~~A~~~L~~~~~~~~----dp----~---~~~~----~~G~~~~~~g~~~~A~~~l~~aL~~~P~ 301 (1157)
T PRK11447 248 -----------GDSVAAARSQLAEQQKQLA----DP----A---FRAR----AQGLAAVDSGQGGKAIPELQQAVRANPK 301 (1157)
T ss_pred -----------chHHHHHHHHHHHHHHhcc----Cc----c---hHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 0122234444443322221 11 0 0001 1123444567899999999999999999
Q ss_pred hhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchH--------HHHH--HHHHHHHhcCChhhHHHHHHHHhhhh
Q 000770 918 CLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQ--------CIWN--QYVEYALQNGRHDFAAELMDRWFHSV 986 (1294)
Q Consensus 918 c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ--------~IWn--Qy~e~aLq~~~~d~A~~il~rwf~s~ 986 (1294)
..++...++.++ +....+.+..-|++++...|+..+.-. ..|- +.+.-++..|+.+.|.+.+.+-...
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999998888888 555568899999999999998764210 1121 2244556788999999987662110
Q ss_pred hhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Q 000770 987 WKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFK 1066 (1294)
Q Consensus 987 ~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~ 1066 (1294)
.++ + ...++++.....-+++..||...|++|++..... .
T Consensus 381 -----------------------------~P~---------~-~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~--~ 419 (1157)
T PRK11447 381 -----------------------------DNT---------D-SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN--T 419 (1157)
T ss_pred -----------------------------CCC---------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--H
Confidence 010 1 1245556666678899999999999999876522 2
Q ss_pred HHHHHHHHHHhcCcCCCCCCCchHHHHHHHhHHHHhhcc--------Cc--ccccchhHhhhcCCch----hHHHHHhhc
Q 000770 1067 HCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARS--------LP--YLKLLPRQFINNIERP----RLQQLIDNL 1132 (1294)
Q Consensus 1067 hcwrEya~F~~~~~~~~~~d~~~~~~~~ll~~yL~~~~~--------lp--~~~pLsrrfl~~I~k~----rv~~li~~~ 1132 (1294)
..|+..+.+.. .. +. .+-...++.+....+. +- ....+...++..=+.. .+++.+.
T Consensus 420 ~a~~~L~~l~~-~~-~~------~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-- 489 (1157)
T PRK11447 420 NAVRGLANLYR-QQ-SP------EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-- 489 (1157)
T ss_pred HHHHHHHHHHH-hc-CH------HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 23433333321 11 11 1112222221110000 00 0000111111110000 1222221
Q ss_pred cCCCCCchhhHHHHHHhhhCCCCccccccCcchhHHHHHHHHhhcCchhHHHHHHHHHhhh-----------------cc
Q 000770 1133 LSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNK-----------------DH 1195 (1294)
Q Consensus 1133 l~P~ssd~sl~N~Vle~~yg~SllPq~~~~~K~lvdfvE~imE~~P~Ny~LALav~kll~k-----------------~~ 1195 (1294)
+.|- +..+......++ ...++.+.-+...+.+++.-|.|...-.+.+.++.+ .|
T Consensus 490 ~~P~--~~~~~~~LA~~~-------~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~ 560 (1157)
T PRK11447 490 LDPG--SVWLTYRLAQDL-------RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW 560 (1157)
T ss_pred hCCC--CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc
Confidence 2232 222222222222 134567777778888888888776543333322221 11
Q ss_pred CCCCCCCchhhHHHHHHhhhhh------------hhhhcCcCCchHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchh
Q 000770 1196 NPNITDAVPESVLFWASSSLVS------------AIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSI 1263 (1294)
Q Consensus 1196 ~~~~~d~~s~~~~fWA~s~L~n------------ai~~AiPvapE~vWveAa~~l~~l~~~~~v~~rfyq~AlSvyPfs~ 1263 (1294)
+++... ....+....-..+.+ ++++.-|-.| .++..-|.++.+....++- ..+|++|+...|-..
T Consensus 561 ~~~~~~-l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~-~~~~~La~~~~~~g~~~~A-~~~y~~al~~~P~~~ 637 (1157)
T PRK11447 561 NSNIQE-LAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST-RIDLTLADWAQQRGDYAAA-RAAYQRVLTREPGNA 637 (1157)
T ss_pred ChhHHH-HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc-hHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCH
Confidence 100000 000000000000000 1222345333 4677778887766665555 789999999999999
Q ss_pred hhhhhhhhhhcccCCH
Q 000770 1264 KLWKCYYDLSKTKGDL 1279 (1294)
Q Consensus 1264 ~LWk~yl~~~ks~G~~ 1279 (1294)
..|...-......|..
T Consensus 638 ~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 638 DARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHHHHCCCH
Confidence 9988887777777884
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.54 E-value=2.5e-05 Score=95.10 Aligned_cols=383 Identities=14% Similarity=0.045 Sum_probs=209.6
Q ss_pred hhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCC
Q 000770 626 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 626 n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~ 705 (1294)
.-+...|.+.+.|+.+|..++.... .++|+..|.+|++.+|.+..+|.....+|.+.+..++...++..+++..|
T Consensus 101 ~~l~~~P~~~~a~~~la~~l~~~g~-----~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 101 KLLAVNVCQPEDVLLVASVLLKSKQ-----YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHhCCCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 3444556666666666655544422 34566666666666666666666666666665555555555555555544
Q ss_pred ccHHHHHHH--HhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccc
Q 000770 706 GSYALWLMY--INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP 783 (1294)
Q Consensus 706 ~SY~LWL~Y--Lnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~ 783 (1294)
.+=..|... +-....++.+..+|.++|.. .+. .. . . ....+...+...|+.+.|++.+..++..
T Consensus 176 ~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~---~~~---~~-~-----~--~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 176 PRGDMIATCLSFLNKSRLPEDHDLARALLPF---FAL---ER-Q-----E--SAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---cc-h-----h--HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 433332111 11124444444444443322 000 00 0 0 1112344455666666666665555543
Q ss_pred cCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHH
Q 000770 784 ATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAV 863 (1294)
Q Consensus 784 a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av 863 (1294)
..+ + . .....+..+|.- -++.. +.+..+++.|+.|+
T Consensus 242 ~p~-----~--~-----------~~~~~Lg~~l~~-~G~~~-------------------------eA~~~A~~~~~~Al 277 (656)
T PRK15174 242 GLD-----G--A-----------ALRRSLGLAYYQ-SGRSR-------------------------EAKLQAAEHWRHAL 277 (656)
T ss_pred CCC-----C--H-----------HHHHHHHHHHHH-cCCch-------------------------hhHHHHHHHHHHHH
Confidence 211 0 0 001112211111 11111 11257889999888
Q ss_pred HhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHH
Q 000770 864 NSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFE 942 (1294)
Q Consensus 864 ~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Fe 942 (1294)
+.-- +. -....++...+....+++.|+..+++.+++.|...+....+++++ +.+..+.+...|+
T Consensus 278 ~l~P----------~~-----~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 278 QFNS----------DN-----VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred hhCC----------CC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6432 10 124567788888899999999999999999999999998888888 5555588899999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCC
Q 000770 943 EALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVS 1022 (1294)
Q Consensus 943 eal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~ 1022 (1294)
.++...|..+. .++..+....+.|+.+.|.+.+.+-.....+.
T Consensus 343 ~al~~~P~~~~----~~~~~a~al~~~G~~deA~~~l~~al~~~P~~--------------------------------- 385 (656)
T PRK15174 343 QLAREKGVTSK----WNRYAAAALLQAGKTSEAESVFEHYIQARASH--------------------------------- 385 (656)
T ss_pred HHHHhCccchH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh---------------------------------
Confidence 99999998762 34445666677889999999986622211110
Q ss_pred CCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcCCCCCCCchHHHHHHHhHHHHh
Q 000770 1023 NRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDR 1102 (1294)
Q Consensus 1023 ~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~~~~~~~~~d~~~~~~~~ll~~yL~~ 1102 (1294)
+.....||..+|++|+.++....-..=|..-+.+- .++-. ...+.-+-==|||+|
T Consensus 386 -------------------~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~~---~~~~~~~~~~~~~~~ 440 (656)
T PRK15174 386 -------------------LPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGR---QSGIE---RDEWERRAKWGYLAD 440 (656)
T ss_pred -------------------chhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcc---cccCC---hHHHHHHHHhhHHHH
Confidence 02344699999999999886332222576655442 22221 112222333466665
Q ss_pred hccC--------cccccchhHhh-hcCCchhHHHHHhh-----ccCCCCCchhhHHHHHHh
Q 000770 1103 ARSL--------PYLKLLPRQFI-NNIERPRLQQLIDN-----LLSPVSSDFSLVNLVLEV 1149 (1294)
Q Consensus 1103 ~~~l--------p~~~pLsrrfl-~~I~k~rv~~li~~-----~l~P~ssd~sl~N~Vle~ 1149 (1294)
.=.| .+-|||.++.- .+-+.. ++..+.. +++|--.++++.+.++-.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a~~~~kgvi~~t~H~gnwE~~~~~~~~ 500 (656)
T PRK15174 441 NFLLDWLECRGEQADEPMYRLADISHVEQF-FQRLQLDQRGCIIVSAHLGAMYAGPMILSL 500 (656)
T ss_pred HHHHHHHHhcccchhhHHHHHhhhhhHHHH-HHHHHhcCCCEEEEecCcchhhHHHHHHHH
Confidence 4332 35566654322 121111 3333221 456666777887766543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.46 E-value=0.00011 Score=89.76 Aligned_cols=326 Identities=8% Similarity=-0.019 Sum_probs=225.5
Q ss_pred HHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 624 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 624 i~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
+...+.+.|.+.+++--++...+.. -..++|+.++.++++.+|.++..|..--.+|.+.+..++..+.++.|++.
T Consensus 65 ~~~~l~~~p~~~~~l~~l~~~~l~~-----g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 65 LSDRVLTAKNGRDLLRRWVISPLAS-----SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred hHHHHHhCCCchhHHHHHhhhHhhc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999998888766642 23578999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHhhc---cCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhh
Q 000770 704 NEGSYALWLMYINSR---TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRL 780 (1294)
Q Consensus 704 ~~~SY~LWL~YLnsr---~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~l 780 (1294)
+|.+...|....+.- ..+++...+|.+++.. .+.. ..+.. .+ -.+...|++++|++.+..+
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-------~P~~---~~a~~-----~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-------VPPR---GDMIA-----TC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------CCCC---HHHHH-----HH-HHHHHcCCHHHHHHHHHHH
Confidence 999999998776663 4455556666654332 1111 11111 11 2356789999999988877
Q ss_pred ccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHH
Q 000770 781 LIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIE 860 (1294)
Q Consensus 781 L~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe 860 (1294)
++.....+.. . . ..+.-+++ .....+.+++.++
T Consensus 204 l~~~~~~~~~---~----~----------~~l~~~l~------------------------------~~g~~~eA~~~~~ 236 (656)
T PRK15174 204 LPFFALERQE---S----A----------GLAVDTLC------------------------------AVGKYQEAIQTGE 236 (656)
T ss_pred HhcCCCcchh---H----H----------HHHHHHHH------------------------------HCCCHHHHHHHHH
Confidence 7663221110 0 0 00000000 1255677888888
Q ss_pred HHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHH----HHHHHHHHHHhCcchhHHHHHHHHhh-ccccCC
Q 000770 861 MAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLEC----SMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGD 935 (1294)
Q Consensus 861 ~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~----a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~ 935 (1294)
.|+..-. +. -....++-..+....+++. |..++++.++..|...+.+..++.+. +.+..+
T Consensus 237 ~al~~~p----------~~-----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 237 SALARGL----------DG-----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHhcCC----------CC-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 8875321 11 1234456666666777774 89999999999999999998888888 455558
Q ss_pred ccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCC
Q 000770 936 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTS 1015 (1294)
Q Consensus 936 ~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s 1015 (1294)
.+...|++++...|.+.. +|+.++.-..+.|+.+.|.+.+.+-.. .
T Consensus 302 eA~~~l~~al~l~P~~~~----a~~~La~~l~~~G~~~eA~~~l~~al~--------------------------~---- 347 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPY----VRAMYARALRQVGQYTAASDEFVQLAR--------------------------E---- 347 (656)
T ss_pred HHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------h----
Confidence 899999999999999874 888899988899999999998755221 0
Q ss_pred CCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q 000770 1016 DPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA---SEHFKHCVREHAMLL 1076 (1294)
Q Consensus 1016 ~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~---~e~~~hcwrEya~F~ 1076 (1294)
.++ +. .+++.+.....-.|+..||...|++|++... ++.+......|.-+.
T Consensus 348 ~P~---------~~-~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 348 KGV---------TS-KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred Ccc---------ch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 011 11 1122222223567999999999999998855 444555555555444
No 12
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.45 E-value=0.00051 Score=83.43 Aligned_cols=490 Identities=18% Similarity=0.221 Sum_probs=301.3
Q ss_pred hhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCcc
Q 000770 628 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 707 (1294)
Q Consensus 628 vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~S 707 (1294)
..-+|.+-..||.-|. |...+++ +..|=+..-+|-|..|.|+.||++-.+|- .++..--...+||+|+|.|
T Consensus 278 retnP~hp~gWIAsAr--LEEvagK---l~~Ar~~I~~GCe~cprSeDvWLeaiRLh----p~d~aK~vvA~Avr~~P~S 348 (913)
T KOG0495|consen 278 RETNPKHPPGWIASAR--LEEVAGK---LSVARNLIMKGCEECPRSEDVWLEAIRLH----PPDVAKTVVANAVRFLPTS 348 (913)
T ss_pred HhcCCCCCchHHHHHH--HHHHhhH---HHHHHHHHHHHHhhCCchHHHHHHHHhcC----ChHHHHHHHHHHHHhCCCC
Confidence 3458999999998875 5555555 56788999999999999999999999997 4555557899999999999
Q ss_pred HHHHHHHHhhccCccchHHHHHHHHHHHhccc-------cC-CCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHh
Q 000770 708 YALWLMYINSRTPLNHRLDAYDAALSVLCRCA-------SA-SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISR 779 (1294)
Q Consensus 708 Y~LWL~YLnsr~~fddr~~ay~raL~~L~~~a-------Sa-~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~ 779 (1294)
-.||+..+.++++...|-.|...||++.=+.- +- ++.| |.| ++ .+|.+
T Consensus 349 v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~d-----ari--lL-------------~rAve---- 404 (913)
T KOG0495|consen 349 VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPED-----ARI--LL-------------ERAVE---- 404 (913)
T ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHH-----HHH--HH-------------HHHHH----
Confidence 99999999999999999999999999875521 11 1111 334 11 22222
Q ss_pred hccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcc-cccccccccCCCC---CCCcchHHHH
Q 000770 780 LLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE-CEKELFAIDWPPV---QLEDDEKQRA 855 (1294)
Q Consensus 780 lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e-~~KElf~I~W~~v---~l~~~~~~~l 855 (1294)
+++. +| =+||++.-|--|..--..+-.-.+ ..+|+ =-|-+. +-...+.+|+
T Consensus 405 ccp~----------s~-------------dLwlAlarLetYenAkkvLNkaRe~iptd~--~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 405 CCPQ----------SM-------------DLWLALARLETYENAKKVLNKAREIIPTDR--EIWITAAKLEEANGNVDMV 459 (913)
T ss_pred hccc----------hH-------------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCh--hHHHHHHHHHHhcCCHHHH
Confidence 1111 21 145555544443321111000000 11111 002111 1123488999
Q ss_pred HHHHHHHHHhhccccCCCccccc------------cccchhhhhHhhHHH-----------------HHHHhhhHHHHHH
Q 000770 856 IKLIEMAVNSVELYSNGESLEKE------------TNLRSAHCFAVNHIW-----------------CMAVLNGLECSMN 906 (1294)
Q Consensus 856 lkLfe~Av~s~~~~~~~Esl~~~------------~~lr~aq~lalN~I~-----------------c~~ale~~E~a~~ 906 (1294)
.|++..|+.++. .|+--+.-+ ...-.||-..-|.|- ....-..++||+.
T Consensus 460 ~kii~rgl~~L~--~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 460 EKIIDRGLSELQ--ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHh--hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 999999988876 322212111 123344444333332 2334456889999
Q ss_pred HHHHHHHhCcchhHHHHHHHHhhccccCC-ccHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHhcCChhhHHHHHHHHhh
Q 000770 907 LLEKYIKLYPSCLELVLMKARLQKHDFGD-LSSVGFEEALIKWPKGVPGIQCIWNQYVE-YALQNGRHDFAAELMDRWFH 984 (1294)
Q Consensus 907 Lc~kyvelyP~c~eLvL~sArLqk~d~~~-~~~~~Feeal~~wPKea~GiQ~IWnQy~e-~aLq~~~~d~A~~il~rwf~ 984 (1294)
..-..++-+|+---|-+-++.+.+.+|.- .-.+-|++|...+||.- .+|-+|+. +-+. |..-.|+.||.+=|+
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae----~lwlM~ake~w~a-gdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE----ILWLMYAKEKWKA-GDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 99999999999999999999999888884 44455678888888654 59999998 6666 588899999866332
Q ss_pred hhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Q 000770 985 SVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH 1064 (1294)
Q Consensus 985 s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~ 1064 (1294)
- .|+ ++|+-|.=+ -...-....++|+.-+-||...+.-
T Consensus 613 ~------------------------------------~pn-seeiwlaav---Kle~en~e~eraR~llakar~~sgT-- 650 (913)
T KOG0495|consen 613 A------------------------------------NPN-SEEIWLAAV---KLEFENDELERARDLLAKARSISGT-- 650 (913)
T ss_pred h------------------------------------CCC-cHHHHHHHH---HHhhccccHHHHHHHHHHHhccCCc--
Confidence 1 011 223322211 1122334567888888888875554
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCchHHHHHHHhHHHHhhccCcccccchhHhhhcCCchhHHHHHhhccCCCCCchhhHH
Q 000770 1065 FKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLSPVSSDFSLVN 1144 (1294)
Q Consensus 1065 ~~hcwrEya~F~~~~~~~~~~d~~~~~~~~ll~~yL~~~~~lp~~~pLsrrfl~~I~k~rv~~li~~~l~P~ssd~sl~N 1144 (1294)
+..||.++-|...-.- +.+-+++++.+|- ..|--.||+ +. .-
T Consensus 651 -eRv~mKs~~~er~ld~-------~eeA~rllEe~lk-------~fp~f~Kl~-------lm----------------lG 692 (913)
T KOG0495|consen 651 -ERVWMKSANLERYLDN-------VEEALRLLEEALK-------SFPDFHKLW-------LM----------------LG 692 (913)
T ss_pred -chhhHHHhHHHHHhhh-------HHHHHHHHHHHHH-------hCCchHHHH-------HH----------------Hh
Confidence 4789998888743211 1234666666554 222333333 11 01
Q ss_pred HHHHhhhCCCCccccccCcc-hhHHHHHHHHhhcCchhHHHHHHHHHhhhccCCCCCCCchhhHHHHHHhhhhhhhhhcC
Q 000770 1145 LVLEVCYGPSLLPRNFSKLK-DLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAV 1223 (1294)
Q Consensus 1145 ~Vle~~yg~SllPq~~~~~K-~lvdfvE~imE~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fWA~s~L~nai~~Ai 1223 (1294)
++.|- ..... --..+.-++ -..|+-.+|=|.+.||=-| +++. .=|+++|=-|-..-
T Consensus 693 Qi~e~----------~~~ie~aR~aY~~G~-k~cP~~ipLWllLakleEk-------~~~~----~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 693 QIEEQ----------MENIEMAREAYLQGT-KKCPNSIPLWLLLAKLEEK-------DGQL----VRARSILDRARLKN- 749 (913)
T ss_pred HHHHH----------HHHHHHHHHHHHhcc-ccCCCCchHHHHHHHHHHH-------hcch----hhHHHHHHHHHhcC-
Confidence 11111 00000 000111111 3567777888877777655 3322 23566666664432
Q ss_pred cCCchHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhcccCCHHHHHHHHH
Q 000770 1224 PVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKAAR 1287 (1294)
Q Consensus 1224 PvapE~vWveAa~~l~~l~~~~~v~~rfyq~AlSvyPfs~~LWk~yl~~~ks~G~~~~iveaar 1287 (1294)
| .-..+|+|++.++-.. |..+.++...-||||-.|=|..||-...-+++--+--.+-++|-|
T Consensus 750 P-k~~~lwle~Ir~ElR~-gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 750 P-KNALLWLESIRMELRA-GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred C-CcchhHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 5 5578999999885443 556666888899999999999999999998876665333344433
No 13
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.31 E-value=0.0022 Score=80.17 Aligned_cols=567 Identities=17% Similarity=0.165 Sum_probs=300.8
Q ss_pred hhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCc
Q 000770 627 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 706 (1294)
Q Consensus 627 ~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~ 706 (1294)
-|+|+|...+.|--||..|=++- ..++||+----|=-.||.+..+|.+--.+.-+.+.-...+--+..||+.+|.
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrG-----d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRG-----DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcc-----cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 78999999999999998876663 2356666555566679999999999999987777665566778889999999
Q ss_pred cHHHHHHHHhhc---cCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccc
Q 000770 707 SYALWLMYINSR---TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP 783 (1294)
Q Consensus 707 SY~LWL~YLnsr---~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~ 783 (1294)
.+++-|.+..+- ...--++..|.++++..- ..+ .+ .++|++.-+++.....+..++|++.|.+.+..
T Consensus 240 n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d---~e------r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 240 NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVD---IE------RIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chh---HH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999988887773 222334555666554432 111 11 48888888899998888889999999999883
Q ss_pred cCC-CCCCccccHHHHHhhcCcCCcchH----------------------------------------------HHHHHH
Q 000770 784 ATG-SNDRHSLFLSDILTCLTISDKLIF----------------------------------------------WVCCVY 816 (1294)
Q Consensus 784 a~~-sd~p~~~sls~Il~~LT~sDRci~----------------------------------------------WL~cih 816 (1294)
... .+++.--.++.+.=....+|+.++ .+|.+|
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 111 122211122222222223333222 222222
Q ss_pred HHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHH----HHH-----HHHHHhhccccCCCccccccccchhhhh
Q 000770 817 LVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI----KLI-----EMAVNSVELYSNGESLEKETNLRSAHCF 887 (1294)
Q Consensus 817 Lv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~ll----kLf-----e~Av~s~~~~~~~Esl~~~~~lr~aq~l 887 (1294)
|= -++|+..+.+-+ +....| +.+..++++ +++ .-|++-...-.+.|.... -++
T Consensus 390 L~-~~e~~e~ll~~l-----~~~n~~-----~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~-------~~v 451 (895)
T KOG2076|consen 390 LK-ERELLEALLHFL-----VEDNVW-----VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN-------AFV 451 (895)
T ss_pred cc-ccchHHHHHHHH-----HHhcCC-----hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc-------hhh
Confidence 21 122222222211 011233 112222222 221 123333333333332222 247
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccC-CccHHHHHHHHhc-------------CCCCCC
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG-DLSSVGFEEALIK-------------WPKGVP 953 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~-~~~~~~Feeal~~-------------wPKea~ 953 (1294)
-.++-||+..++..|.|.+--.+.+++-|.|++.+..++-|+.+.|- +.. .+||.+ |++++
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka----lEtL~~~~~~D~~~~e~~a~~~e~- 526 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA----LETLEQIINPDGRNAEACAWEPER- 526 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH----HHHHhcccCCCccchhhccccHHH-
Confidence 78999999999999999999999999999999999999999965533 433 445554 55554
Q ss_pred chHHHHHHHHHHHHhcCChh----hHHHHHHHHhhhhhhcc---cccc-cCCccccCCCCC--C------CCCCCC----
Q 000770 954 GIQCIWNQYVEYALQNGRHD----FAAELMDRWFHSVWKVQ---YSQV-EISDPLVADMSH--S------SPESTS---- 1013 (1294)
Q Consensus 954 GiQ~IWnQy~e~aLq~~~~d----~A~~il~rwf~s~~k~~---~~~~-~~~d~~~~~~s~--~------sl~~~~---- 1013 (1294)
+|=.+++.-.-+-|..+ -+..++..|+.-..--. ..+. .+.-+....++. - ....+.
T Consensus 527 ---ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 527 ---RILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred ---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 56666666444555655 34444444332211110 0000 000000000000 0 000000
Q ss_pred CCCCc------ccCCCCcchh--HHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhcCcCCC
Q 000770 1014 TSDPE------FSVSNRNQMD--VMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEH--FKHCVREHAMLLLINESEP 1083 (1294)
Q Consensus 1014 ~s~~d------~l~~~s~q~D--~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~--~~hcwrEya~F~~~~~~~~ 1083 (1294)
+...| ....+..-.| -+|--+.+||.+ .+..+||-..++.|+.+-.+-. -..|=+++++..++=....
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 00000 0000111112 355566788855 4789999999999998877322 2344555665554433332
Q ss_pred CCCCchHHHHHHHhHHHHhhccCcccccc--------hhHhhhcCCchhHHHHHhhccCCCCCc-hhhHHHHHHhhhCCC
Q 000770 1084 KEGAPISWQLKLLNSYLDRARSLPYLKLL--------PRQFINNIERPRLQQLIDNLLSPVSSD-FSLVNLVLEVCYGPS 1154 (1294)
Q Consensus 1084 ~~d~~~~~~~~ll~~yL~~~~~lp~~~pL--------srrfl~~I~k~rv~~li~~~l~P~ssd-~sl~N~Vle~~yg~S 1154 (1294)
. ...+..+-+-+...+.. +.|+ .+-|.++...-+..-+|-..+.+...| . ++.+.||--
T Consensus 682 ~-----~~a~~~lR~~i~~~~~~--~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~-----~l~~i~gh~ 749 (895)
T KOG2076|consen 682 P-----GDAFSYLRSVITQFQFY--LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP-----PLALIYGHN 749 (895)
T ss_pred H-----HHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc-----ceeeeechh
Confidence 2 11233332222221111 2222 122333333322222333333333333 2 112223311
Q ss_pred CccccccCcchhHHHHHHHHhhcCchh----HHHHHH-----HH-HhhhccCCCCCCCchhhHHHHHHhhh--hhhhhhc
Q 000770 1155 LLPRNFSKLKDLVDFVEGIMEIVPSNY----QLAFSV-----FK-LLNKDHNPNITDAVPESVLFWASSSL--VSAIFHA 1222 (1294)
Q Consensus 1155 llPq~~~~~K~lvdfvE~imE~~P~Ny----~LALav-----~k-ll~k~~~~~~~d~~s~~~~fWA~s~L--~nai~~A 1222 (1294)
++--.. -|.....-=++-..+|.+. -|||++ .| +.++|+ .-+++.++| ++-+..+
T Consensus 750 ~~~~~s--~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~-----------~i~qG~afL~RY~~lR~~ 816 (895)
T KOG2076|consen 750 LFVNAS--FKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHA-----------QIAQGFAFLKRYKELRRC 816 (895)
T ss_pred Hhhccc--hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHhhcc
Confidence 111110 1222222223446778744 455544 22 222322 345556666 6665522
Q ss_pred CcCCchHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchhh
Q 000770 1223 VPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIK 1264 (1294)
Q Consensus 1223 iPvapE~vWveAa~~l~~l~~~~~v~~rfyq~AlSvyPfs~~ 1264 (1294)
- -.-|.....|-+. ...|...++..||++||-++|.+..
T Consensus 817 ~-~~QEa~YNigRay--h~~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 817 E-EKQEAFYNIGRAY--HQIGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred H-HHHHHHHHHHHHH--HHcccHHHHHHHHHHHhCCCccccc
Confidence 2 2347777777777 7789999999999999999998763
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.22 E-value=0.00031 Score=77.63 Aligned_cols=281 Identities=14% Similarity=0.155 Sum_probs=172.4
Q ss_pred HhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhcCCCCCCccchHHHh
Q 000770 625 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS----EILWITYLLIFYSNTNSVGKDDMFSYS 700 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S----~~LW~~YL~Ly~q~~~~ee~~eM~e~A 700 (1294)
.+.+..+|.+.+.|..+|..+..+.. ++.|+.++.++++..+.. ...|...-.+|.+.+.-+.....|..+
T Consensus 59 ~~al~~~p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 59 IEMLKVDPETVELHLALGNLFRRRGE-----VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHcCc-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555678888888888777765432 356777777777643322 245666677777777766666777888
Q ss_pred hhcCCccHHHHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHH
Q 000770 701 VKHNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 777 (1294)
Q Consensus 701 Vq~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l 777 (1294)
++..+.....+...+.. ...++.....|.+++.. .+.. ....+......+...++..|+.+.|+..+
T Consensus 134 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 134 VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-------GGDS---LRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-------cCCc---chHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 87766666666554444 24444455555554431 1111 00011122334555666778888888876
Q ss_pred HhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHH
Q 000770 778 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 857 (1294)
Q Consensus 778 ~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llk 857 (1294)
..+++.... .. .....+.-+|.- ..+.+.+++
T Consensus 204 ~~al~~~p~-------~~-----------~~~~~la~~~~~------------------------------~g~~~~A~~ 235 (389)
T PRK11788 204 KKALAADPQ-------CV-----------RASILLGDLALA------------------------------QGDYAAAIE 235 (389)
T ss_pred HHHHhHCcC-------CH-----------HHHHHHHHHHHH------------------------------CCCHHHHHH
Confidence 666654211 10 011112222211 146778888
Q ss_pred HHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCc
Q 000770 858 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDL 936 (1294)
Q Consensus 858 Lfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~ 936 (1294)
+|+.++..-. . .. .....+++.++....+++.|..++++.++.+|.. +.+...+++. +.+..+.
T Consensus 236 ~~~~~~~~~p----------~-~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 236 ALERVEEQDP----------E-YL---SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEA 300 (389)
T ss_pred HHHHHHHHCh----------h-hH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHH
Confidence 9988876421 0 00 0123456677888899999999999999999987 4557777777 5555688
Q ss_pred cHHHHHHHHhcCCCCCCchHHHHHHHHHHHHh---cCChhhHHHHHHHHhhhhhh
Q 000770 937 SSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ---NGRHDFAAELMDRWFHSVWK 988 (1294)
Q Consensus 937 ~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq---~~~~d~A~~il~rwf~s~~k 988 (1294)
+...|++++...|..+ -|+.+...++. .|+.+.|.+++.++.+...+
T Consensus 301 A~~~l~~~l~~~P~~~-----~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 301 AQALLREQLRRHPSLR-----GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHHHHHHHHhCcCHH-----HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9999999999998876 34444444442 44778888888888875543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.20 E-value=0.00035 Score=90.03 Aligned_cols=89 Identities=6% Similarity=-0.077 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 000770 889 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 967 (1294)
Q Consensus 889 lN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aL 967 (1294)
.++-.++......+.|+..+++.++..|...+..+.+++++ ..+..+.+...|+.++...|.... ++...+.-..
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~----~~~~la~~~~ 682 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN----TQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH----HHHHHHHHHH
Confidence 45555666666777777777777777777777766666666 333345666666666666665553 4555555445
Q ss_pred hcCChhhHHHHHHH
Q 000770 968 QNGRHDFAAELMDR 981 (1294)
Q Consensus 968 q~~~~d~A~~il~r 981 (1294)
+.|+.+.|.+++.+
T Consensus 683 ~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 683 ALGDTAAAQRTFNR 696 (1157)
T ss_pred hCCCHHHHHHHHHH
Confidence 56666666666543
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.18 E-value=0.00016 Score=89.37 Aligned_cols=368 Identities=10% Similarity=0.108 Sum_probs=221.1
Q ss_pred hhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCC
Q 000770 626 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 626 n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~ 705 (1294)
+-+...|.+.++|+.+|..++.+. ...+|+..|.++++.+|.+.. |...-.++...+..++....+++|++..|
T Consensus 74 ~al~~~P~~~~a~~~la~~l~~~g-----~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 74 KALSLEPQNDDYQRGLILTLADAG-----QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 445566999999998888877553 347899999999999999999 99999999999888888899999999998
Q ss_pred ccHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCC---Cc-cchhhHHHHHHHHHHHHHhhcccH---HHHHHHHH
Q 000770 706 GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDG---DE-MHASACILDLFLQMLQCFCMSGNT---EKAIQRIS 778 (1294)
Q Consensus 706 ~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~---d~-~~~SA~iLDl~LQml~~Lc~SGn~---~kAI~~l~ 778 (1294)
.+-.+|..|...-. +....+.||..|-.... .+. .. .+..+.+ +-++++..+...|+. ++|++.++
T Consensus 148 ~~~~~~~~la~~l~----~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~--~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 148 QTQQYPTEYVQALR----NNRLSAPALGAIDDANL-TPAEKRDLEADAAAEL--VRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred CCHHHHHHHHHHHH----HCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHH--HHhhcccccChhHHHHHHHHHHHHHH
Confidence 88888887765522 11223344544433221 110 00 0011112 111122222233444 78999888
Q ss_pred hhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcc-cccc----c-ccccCC-CCCCCcch
Q 000770 779 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE-CEKE----L-FAIDWP-PVQLEDDE 851 (1294)
Q Consensus 779 ~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e-~~KE----l-f~I~W~-~v~l~~~~ 851 (1294)
.+++.-....+.........+ |+ + .-++.-++..+++- .++ ..+. + ....|- .......+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~------d~----l--~~Ll~~g~~~eA~~-~~~~ll~~~~~~P~~a~~~la~~yl~~g~ 287 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARI------DR----L--GALLARDRYKDVIS-EYQRLKAEGQIIPPWAQRWVASAYLKLHQ 287 (765)
T ss_pred HHHhhcccCCccchHHHHHHH------HH----H--HHHHHhhhHHHHHH-HHHHhhccCCCCCHHHHHHHHHHHHhcCC
Confidence 888652221111111111000 00 0 00111122222221 111 1111 1 112222 12333557
Q ss_pred HHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcch-------------
Q 000770 852 KQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC------------- 918 (1294)
Q Consensus 852 ~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c------------- 918 (1294)
++.++++|+.++.. ++.. .........++...+...++++.|+.+++++++..|..
T Consensus 288 ~e~A~~~l~~~l~~------~p~~-----~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 288 PEKAQSILTELFYH------PETI-----ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred cHHHHHHHHHHhhc------CCCC-----CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 88888888887642 1110 01112344455555677799999999999999998843
Q ss_pred --hHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhccccccc
Q 000770 919 --LELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVE 995 (1294)
Q Consensus 919 --~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~ 995 (1294)
.+...+.+.+. ..+..+.+...|++++...|.+. .+|+..+.-.+..|.++.|++.+.+=
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~a------------- 419 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKA------------- 419 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH-------------
Confidence 34556666666 44545889999999999988885 49999999988999999999998651
Q ss_pred CCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh----hhHHHHHHHH
Q 000770 996 ISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVRE 1071 (1294)
Q Consensus 996 ~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~----~e~~~hcwrE 1071 (1294)
++. .+| +.- .++.+.+..+=.+++.+|...++++++.-. ...+..-|.-
T Consensus 420 -------------l~l----~Pd---------~~~-l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~~ 472 (765)
T PRK10049 420 -------------EVL----EPR---------NIN-LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARDV 472 (765)
T ss_pred -------------Hhh----CCC---------ChH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 111 111 111 223344445667899999999999999766 3335555554
Q ss_pred HHH
Q 000770 1072 HAM 1074 (1294)
Q Consensus 1072 ya~ 1074 (1294)
|=+
T Consensus 473 ~~~ 475 (765)
T PRK10049 473 HHM 475 (765)
T ss_pred ccC
Confidence 433
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.06 E-value=0.0013 Score=79.14 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=92.2
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCC---chHHHHHHHH
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVP---GIQCIWNQYV 963 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~---GiQ~IWnQy~ 963 (1294)
..|+..++.-+.+++.|..++++.++.+|...++....+.+. ..+.-+.+...|+.|+...|+..+ ++..+++...
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 335555666677888999999999999999988887777777 334447788889999988887543 3333444444
Q ss_pred HHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhc
Q 000770 964 EYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQ 1043 (1294)
Q Consensus 964 e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq 1043 (1294)
.+.-..|+.+.|..++.+=.. . .++ ....|+.+.-...-+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~--------------------------l----~p~----------~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALI--------------------------I----DPE----------CDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--------------------------c----CCC----------cHHHHHHHHHHHHHc
Confidence 443345788889888654110 0 011 112345556666778
Q ss_pred ccHHHHHHHHHHHHHhhh
Q 000770 1044 NDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1044 ~~~~EA~~A~ekALkaa~ 1061 (1294)
|+..||...|++|++.+.
T Consensus 556 g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 556 GDVDEALKLFERAAELAR 573 (615)
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 999999999999999987
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.00 E-value=0.00054 Score=82.24 Aligned_cols=257 Identities=15% Similarity=0.066 Sum_probs=179.9
Q ss_pred ccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHH
Q 000770 631 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 710 (1294)
Q Consensus 631 ~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~L 710 (1294)
.|.+...|..++..++... ..++|+..+.+||+.+|.....|+..-.+|...+..++..+.++.|++.+|....+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g-----~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKG-----KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred ChhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4777888888887776543 35789999999999999999999999999999988888889999999998888787
Q ss_pred HHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCC
Q 000770 711 WLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 787 (1294)
Q Consensus 711 WL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~s 787 (1294)
|...... ...++.....|+++|.. .+.. ....+++-.++...|+.+.|+..+..++.....
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l-------~P~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~- 465 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDL-------DPDF--------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE- 465 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CccC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 7765544 24556666667776642 2212 234567788888999999999988887764211
Q ss_pred CCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhc
Q 000770 788 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 867 (1294)
Q Consensus 788 d~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~ 867 (1294)
.+ ++ ...+..+|.- ..+.+.+++.|+.|+....
T Consensus 466 -~~------~~----------~~~lg~~~~~------------------------------~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 466 -AP------DV----------YNYYGELLLD------------------------------QNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred -Ch------HH----------HHHHHHHHHH------------------------------ccCHHHHHHHHHHHHhcCC
Confidence 11 01 1112222211 2467889999999986542
Q ss_pred cccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHh
Q 000770 868 LYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALI 946 (1294)
Q Consensus 868 ~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~ 946 (1294)
+ . ....... .++.-..+.+.....+++.|.+++++.++..|.+...+..+++++ +.+..+.+...|++++.
T Consensus 499 -----~-~-~~~~~~~-~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 499 -----E-T-KPMYMNV-LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred -----c-c-ccccccH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 0 0111110 111112222333457899999999999999999998888889888 55555889999999999
Q ss_pred cCCCCCCchHHHHHHHH
Q 000770 947 KWPKGVPGIQCIWNQYV 963 (1294)
Q Consensus 947 ~wPKea~GiQ~IWnQy~ 963 (1294)
..+.+-.-++.+|+.-+
T Consensus 571 l~~~~~e~~~a~~~~~a 587 (615)
T TIGR00990 571 LARTEGELVQAISYAEA 587 (615)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 98876665677776433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.90 E-value=0.002 Score=71.39 Aligned_cols=249 Identities=13% Similarity=0.049 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCcc-H---HHHHHHHhh---ccCccchHHH
Q 000770 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS-Y---ALWLMYINS---RTPLNHRLDA 727 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~S-Y---~LWL~YLns---r~~fddr~~a 727 (1294)
..++|+..+.++++.+|.+..+|.....+|.+++.-++..+.++.+++....+ . ..|-..... ...++....+
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 129 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL 129 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34679999999999999999999999999999888888888898888863222 1 122222111 1445555555
Q ss_pred HHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCc
Q 000770 728 YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDK 807 (1294)
Q Consensus 728 y~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDR 807 (1294)
|.+++.. .+.. .+....+..+++..|+.++|++.+..+++.... +....
T Consensus 130 ~~~~l~~-------~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~------------- 178 (389)
T PRK11788 130 FLQLVDE-------GDFA--------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVE------------- 178 (389)
T ss_pred HHHHHcC-------Ccch--------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHH-------------
Confidence 6655432 1111 234556788889999999999988877764221 11000
Q ss_pred chHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhh
Q 000770 808 LIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCF 887 (1294)
Q Consensus 808 ci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~l 887 (1294)
+.+..+.....|- ...+.+.+++.|+.+++... .+ . ..
T Consensus 179 -~~~~~~~la~~~~--------------------------~~~~~~~A~~~~~~al~~~p-----~~------~----~~ 216 (389)
T PRK11788 179 -IAHFYCELAQQAL--------------------------ARGDLDAARALLKKALAADP-----QC------V----RA 216 (389)
T ss_pred -HHHHHHHHHHHHH--------------------------hCCCHHHHHHHHHHHHhHCc-----CC------H----HH
Confidence 1111011110110 12577889999999887432 10 0 13
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchh-HHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCL-ELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 965 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~-eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~ 965 (1294)
..++..++....+++.|.+++++.++..|... +.+..++.++ +.+..+.+...|+.++...|... +++..+..
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~~la~~ 291 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-----LLLALAQL 291 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHH
Confidence 45667888889999999999999999999874 4445555555 45556788999999999988653 45788888
Q ss_pred HHhcCChhhHHHHHHH
Q 000770 966 ALQNGRHDFAAELMDR 981 (1294)
Q Consensus 966 aLq~~~~d~A~~il~r 981 (1294)
.+..|..+.|.+++.+
T Consensus 292 ~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 292 LEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHhCCHHHHHHHHHH
Confidence 8888899999999855
No 20
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.0019 Score=76.70 Aligned_cols=415 Identities=16% Similarity=0.188 Sum_probs=249.8
Q ss_pred hhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHH
Q 000770 620 SRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 699 (1294)
Q Consensus 620 ~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~ 699 (1294)
-|..++.+|..+-.+.+.||++|.--..|.. +..|-+|.-|||+.|-.+-+||+-|.-.=-++.......-.+..
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e-----~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dR 132 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKE-----IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 6677888999999999999999987766654 57888999999999988999999998765555555555566666
Q ss_pred hhhcCCccHHHHHHHHhhcc---CccchHHHHHHHHHHHhccccCCCCCccc--------------hhhHHHH-------
Q 000770 700 SVKHNEGSYALWLMYINSRT---PLNHRLDAYDAALSVLCRCASASDGDEMH--------------ASACILD------- 755 (1294)
Q Consensus 700 AVq~~~~SY~LWL~YLnsr~---~fddr~~ay~raL~~L~~~aSa~~~d~~~--------------~SA~iLD------- 755 (1294)
||...|+-=++|.-|+-.+- -..|.-.+|.|=+.. +|....- ++--|-+
T Consensus 133 Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w-------~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP 205 (677)
T KOG1915|consen 133 AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW-------EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP 205 (677)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc
Confidence 77666666666666665542 222333334332211 0000000 0000111
Q ss_pred ---HHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchh----H-
Q 000770 756 ---LFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDA----V- 827 (1294)
Q Consensus 756 ---l~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~----i- 827 (1294)
-.+...-+--.-|+++.|-+.-..+...-.+..+..-..+ .-+..-..++-+-=...||=.+-.++|.. +
T Consensus 206 ~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv--aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~ 283 (677)
T KOG1915|consen 206 KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV--AFAEFEERQKEYERARFIYKYALDHIPKGRAEELY 283 (677)
T ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 1223334444566666655543333322111111100111 11222333333344455666677777765 1
Q ss_pred ------hhhcc--------------------ccccccc--ccCCCCCCC--cchHHHHHHHHHHHHHhhccccCCCcccc
Q 000770 828 ------LQLLE--------------------CEKELFA--IDWPPVQLE--DDEKQRAIKLIEMAVNSVELYSNGESLEK 877 (1294)
Q Consensus 828 ------~d~~e--------------------~~KElf~--I~W~~v~l~--~~~~~~llkLfe~Av~s~~~~~~~Esl~~ 877 (1294)
.-++| +.+.+.. -=|..+.+. .++++++-..+|.|+.-|-+ -+
T Consensus 284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp-------~~ 356 (677)
T KOG1915|consen 284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP-------AS 356 (677)
T ss_pred HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc-------hh
Confidence 11122 3444433 123355554 45899999999999987742 11
Q ss_pred cc-ccchhhhhHhhHHHHHH-HhhhHHHHHHHHHHHHHhCcch----hHHHHHHHHhh-ccccCCccHHHHHHHHhcCCC
Q 000770 878 ET-NLRSAHCFAVNHIWCMA-VLNGLECSMNLLEKYIKLYPSC----LELVLMKARLQ-KHDFGDLSSVGFEEALIKWPK 950 (1294)
Q Consensus 878 ~~-~lr~aq~lalN~I~c~~-ale~~E~a~~Lc~kyvelyP~c----~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPK 950 (1294)
++ .-+-=-.|=+|++.+-- ..+.++-++++-+..+++-|-- --|-|+-|... ++..-.++-..---||-.+||
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc
Confidence 21 22212245667765543 3467777888777777766632 23334555444 555445555555567888888
Q ss_pred CCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHH
Q 000770 951 GVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVM 1030 (1294)
Q Consensus 951 ea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~m 1030 (1294)
.- ||--|++.=||=+.+|.-+.|-.+|.+ .++ .--
T Consensus 437 ~K-----lFk~YIelElqL~efDRcRkLYEkfle--------------------------~~P--------------e~c 471 (677)
T KOG1915|consen 437 DK-----LFKGYIELELQLREFDRCRKLYEKFLE--------------------------FSP--------------ENC 471 (677)
T ss_pred hh-----HHHHHHHHHHHHhhHHHHHHHHHHHHh--------------------------cCh--------------Hhh
Confidence 76 888888888888888888888766543 222 234
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcCCCCCCCchHHHHHHHhHHHHhhccCc
Q 000770 1031 FGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLP 1107 (1294)
Q Consensus 1031 f~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~~~~~~~~~d~~~~~~~~ll~~yL~~~~~lp 1107 (1294)
+.|+.|+=.+.+-|+..-|+-.|+=|+.-...+.-+=.|+-|.-|-...+.- ...-+|-..+|+.++-.+
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~-------ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF-------EKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH-------HHHHHHHHHHHHhcccch
Confidence 6899999999999999999999999999998888889999999997544331 123466666666555443
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.82 E-value=4.7e-05 Score=81.90 Aligned_cols=265 Identities=17% Similarity=0.174 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHH
Q 000770 636 EQCVEMALLILNQDANKLEGMKKALSLLSRALEAD--PTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 713 (1294)
Q Consensus 636 elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan--~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~ 713 (1294)
+..+++|-.++... ..++||.+|.+++..+ |.++.+|-.|-.|....+..++..+++++.++..+.+-...-.
T Consensus 9 ~~~l~~A~~~~~~~-----~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~ 83 (280)
T PF13429_consen 9 EEALRLARLLYQRG-----DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45567777777553 3478999998887754 8999999999999998888888889999998887665555555
Q ss_pred HHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccc
Q 000770 714 YINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSL 793 (1294)
Q Consensus 714 YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~ 793 (1294)
++.. .. ..-|.+|+..+-..-... ++ . +.+..+++.+-..|..+++...|..+...... +
T Consensus 84 l~~l-~~----~~~~~~A~~~~~~~~~~~-~~-----~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~--- 143 (280)
T PF13429_consen 84 LIQL-LQ----DGDPEEALKLAEKAYERD-GD-----P---RYLLSALQLYYRLGDYDEAEELLEKLEELPAA---P--- 143 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------
T ss_pred cccc-cc----cccccccccccccccccc-cc-----c---chhhHHHHHHHHHhHHHHHHHHHHHHHhccCC---C---
Confidence 5554 22 222333443332211111 11 1 13344666667778888888876665532111 0
Q ss_pred cHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCC
Q 000770 794 FLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGE 873 (1294)
Q Consensus 794 sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~E 873 (1294)
+--.+|+....+. . ..++++.+++.++.|++.-- +++
T Consensus 144 ------------~~~~~~~~~a~~~--~--------------------------~~G~~~~A~~~~~~al~~~P---~~~ 180 (280)
T PF13429_consen 144 ------------DSARFWLALAEIY--E--------------------------QLGDPDKALRDYRKALELDP---DDP 180 (280)
T ss_dssp ------------T-HHHHHHHHHHH--H--------------------------HCCHHHHHHHHHHHHHHH-T---T-H
T ss_pred ------------CCHHHHHHHHHHH--H--------------------------HcCCHHHHHHHHHHHHHcCC---CCH
Confidence 1112343333221 1 12788999999999988663 111
Q ss_pred ccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCC
Q 000770 874 SLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGV 952 (1294)
Q Consensus 874 sl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea 952 (1294)
.+..+++.++.-....+.+..++..|.+..|....+....+..+ ..+..+.++..|+.++...|++.
T Consensus 181 ------------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 181 ------------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp ------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred ------------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 24567888887788889999999999999999999987777777 66667899999999999999998
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 000770 953 PGIQCIWNQYVEYALQNGRHDFAAELMDRWFH 984 (1294)
Q Consensus 953 ~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~ 984 (1294)
. +..+|+..+.+.|+.+.|.++.++-+.
T Consensus 249 ~----~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 L----WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp H----HHHHHHHHHT-----------------
T ss_pred c----ccccccccccccccccccccccccccc
Confidence 4 667999999999999999999876544
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=97.50 E-value=0.031 Score=67.23 Aligned_cols=264 Identities=11% Similarity=-0.039 Sum_probs=165.1
Q ss_pred hccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHH----HHHHHhc-----CCCCCCccchHHHh
Q 000770 630 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT----YLLIFYS-----NTNSVGKDDMFSYS 700 (1294)
Q Consensus 630 e~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~----YL~Ly~q-----~~~~ee~~eM~e~A 700 (1294)
..|.+.+.|.-+-.....-.....+.+++|+..+.+|++.||+++..|.. |+.+... .+.-.+..+.+..|
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 45677776643322221112234678899999999999999999988743 2222211 11123445789999
Q ss_pred hhcCCccHHHHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHH
Q 000770 701 VKHNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 777 (1294)
Q Consensus 701 Vq~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l 777 (1294)
++..|.+-..|...-.. ...++.+..+|++||.- .++. + +....+-.++...|+.++|++.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~-----~---~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS-----A---DIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC-----H---HHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999988875332 46677788888887753 2222 1 13345677888999999999988
Q ss_pred HhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHH
Q 000770 778 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 857 (1294)
Q Consensus 778 ~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llk 857 (1294)
..++...-. .+. ...++..+++.. ...+.+++
T Consensus 396 ~~Al~l~P~--~~~----------------~~~~~~~~~~~~------------------------------g~~eeA~~ 427 (553)
T PRK12370 396 NECLKLDPT--RAA----------------AGITKLWITYYH------------------------------TGIDDAIR 427 (553)
T ss_pred HHHHhcCCC--Chh----------------hHHHHHHHHHhc------------------------------cCHHHHHH
Confidence 877766222 110 011222221110 34567888
Q ss_pred HHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhcccc--CC
Q 000770 858 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GD 935 (1294)
Q Consensus 858 Lfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~--~~ 935 (1294)
.++.+++.... +. -..+.|+-.++..+.+.+.|+..+.++.+..|......-.++..+...+ ..
T Consensus 428 ~~~~~l~~~~p---~~-----------~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~ 493 (553)
T PRK12370 428 LGDELRSQHLQ---DN-----------PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERAL 493 (553)
T ss_pred HHHHHHHhccc---cC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHH
Confidence 88887665420 00 0245678888889999999999999999999998888776666553322 22
Q ss_pred ccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHH
Q 000770 936 LSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 977 (1294)
Q Consensus 936 ~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~ 977 (1294)
..+..+.++....|.+.. | ....|++..++ +.+..
T Consensus 494 ~~l~~ll~~~~~~~~~~~-----~-~~~~~~~~g~~-~~~~~ 528 (553)
T PRK12370 494 PTIREFLESEQRIDNNPG-----L-LPLVLVAHGEA-IAEKM 528 (553)
T ss_pred HHHHHHHHHhhHhhcCch-----H-HHHHHHHHhhh-HHHHH
Confidence 234445555556666552 2 55668888733 44443
No 23
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.026 Score=67.56 Aligned_cols=280 Identities=19% Similarity=0.217 Sum_probs=203.9
Q ss_pred ccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHhcCCCCCCccch--------HHHh
Q 000770 631 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS--EILWITYLLIFYSNTNSVGKDDM--------FSYS 700 (1294)
Q Consensus 631 ~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S--~~LW~~YL~Ly~q~~~~ee~~eM--------~e~A 700 (1294)
...+.-+++..|..--.|++ ++.|--+..=||++=|.+ ..|.-.|+..=.|-|.++|..|. +|+-
T Consensus 240 d~~~e~lfvaFA~fEe~qkE-----~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKE-----YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 33344455555544433332 366777788899999997 99999999998888888888764 6788
Q ss_pred hhcCCccHHHHHHHHhhccCccchHH---HHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHH
Q 000770 701 VKHNEGSYALWLMYINSRTPLNHRLD---AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRI 777 (1294)
Q Consensus 701 Vq~~~~SY~LWL~YLnsr~~fddr~~---ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l 777 (1294)
|..||..|..||.||.+..+-.+++. +|+||+ +..+-+..+ -++--+|-=-+=+.+..-..+.+++.+-+.-
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI---anvpp~~ek--r~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI---ANVPPASEK--RYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH---ccCCchhHH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999877766554 588876 444443322 2333333111222233334788899998888
Q ss_pred HhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHH
Q 000770 778 SRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIK 857 (1294)
Q Consensus 778 ~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llk 857 (1294)
+.+|.. -||-++. . .=+||-|++.-|=. .+-+.+-+
T Consensus 390 q~~l~l-----IPHkkFt--F---------aKiWlmyA~feIRq----------------------------~~l~~ARk 425 (677)
T KOG1915|consen 390 QACLDL-----IPHKKFT--F---------AKIWLMYAQFEIRQ----------------------------LNLTGARK 425 (677)
T ss_pred HHHHhh-----cCcccch--H---------HHHHHHHHHHHHHH----------------------------cccHHHHH
Confidence 888874 2332221 1 23799998654421 23456778
Q ss_pred HHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCc
Q 000770 858 LIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDL 936 (1294)
Q Consensus 858 Lfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~ 936 (1294)
.++.|++.|- . .+ +---+|-+-..|-.++-|+-|-+++++--|.+|..-.--|-|. ..++.+-
T Consensus 426 iLG~AIG~cP----K-----~K-------lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 426 ILGNAIGKCP----K-----DK-------LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHhccCC----c-----hh-------HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 8999999984 1 21 2234677777888999999999999999999999988888888 6666788
Q ss_pred cHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 000770 937 SSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 982 (1294)
Q Consensus 937 ~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rw 982 (1294)
+-..|+=|++.-..++| -.+|--|+.|=+..|-.+.|+.+-.|-
T Consensus 490 aRaifelAi~qp~ldmp--ellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMP--ELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHhcCcccccH--HHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 88999999999999999 679999999999999999999987774
No 24
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.34 E-value=0.5 Score=58.70 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHH
Q 000770 1027 MDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA-SEHFKHCVREHAMLL 1076 (1294)
Q Consensus 1027 ~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~-~e~~~hcwrEya~F~ 1076 (1294)
+..-|.|.-|+=|-.=.|..+-|++.|++|+-.++ --+|.++.-.|+.|-
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence 46778899888898999999999999999999999 888999999999884
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.25 E-value=0.044 Score=54.10 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCcc
Q 000770 632 ELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGS 707 (1294)
Q Consensus 632 p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~S 707 (1294)
+...+.++.+|..++.+. .+++|+..+.++++.+|++...|...-.+|...+..++..+.+..|++..|..
T Consensus 28 ~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQG-----DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred CcHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 344677888888877654 35789999999999999999999988888887776555556666666654433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.19 E-value=0.046 Score=69.52 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHH----hhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHH
Q 000770 852 KQRAIKLIEMAVN----SVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKAR 927 (1294)
Q Consensus 852 ~~~llkLfe~Av~----s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sAr 927 (1294)
-+.+.++++...+ .+..+......+++++.. .....+..++....+..|.++++++++.-|.+.+|++..|.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~----~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~ 458 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE----GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALAS 458 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3444455554444 222233233456666654 33445566778999999999999999999999999999999
Q ss_pred hhccc-cCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHH
Q 000770 928 LQKHD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 979 (1294)
Q Consensus 928 Lqk~d-~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il 979 (1294)
+++.. ....+...++.++...|.... +-...+.-+|+-+....|++++
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~----~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLI----LERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHH----HHHHHHHHHHhhhhHHHHHHHH
Confidence 99444 447788888999999999874 7778888999999999998887
No 27
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0022 Score=70.98 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=110.1
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-cccc-CCccHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDF-GDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 964 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~-~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e 964 (1294)
-.+.+++|+.-.++.+.|+.+..+..+.-+.+.++.+..|.|. ...+ ...+..+||.++...|++.. +|..|+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHH
Confidence 4678899999999999999999999998889999999999996 4233 35599999999999999985 9999999
Q ss_pred HHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcc
Q 000770 965 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1044 (1294)
Q Consensus 965 ~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~ 1044 (1294)
|++..+..+.|+.|+.|+...+.++.. +=..|-=|.=|+.-+|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~-------------------------------------~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQ-------------------------------------SKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHH-------------------------------------CHHHHHHHHHHHHHHS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhH-------------------------------------HHHHHHHHHHHHHHcC
Confidence 999999999999999886554333332 2234455667888999
Q ss_pred cHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Q 000770 1045 DWNEARLAIDAALKAAAS-EHFKHCVREH 1072 (1294)
Q Consensus 1045 ~~~EA~~A~ekALkaa~~-e~~~hcwrEy 1072 (1294)
++.-+...++++...... ..++..+-.|
T Consensus 122 dl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 122 DLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp -HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 998888778888776553 3344444333
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=97.02 E-value=0.0056 Score=73.41 Aligned_cols=146 Identities=16% Similarity=0.026 Sum_probs=106.6
Q ss_pred hHHhhhhhccccHHHHHHHHHHHhhhcc----chHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHH
Q 000770 623 GVLNKLKQVELSNEQCVEMALLILNQDA----NKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFS 698 (1294)
Q Consensus 623 di~n~vle~p~D~elwlkLAl~~Lnq~~----n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e 698 (1294)
.+.+-+.-.|.+...|..+|.-++.... .....+.+|+..+.||++.||+++..|..+-.++...+.-++....++
T Consensus 283 ~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~ 362 (553)
T PRK12370 283 LLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK 362 (553)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4456788899999999999987664421 123467999999999999999999999999999998888888889999
Q ss_pred HhhhcCCccHHHHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHH
Q 000770 699 YSVKHNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQ 775 (1294)
Q Consensus 699 ~AVq~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~ 775 (1294)
.|++.+|.+...|..+-.. ...++.+...|++++.. .+.. ..+ ...++..+...|+.++|++
T Consensus 363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-------~P~~---~~~-----~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-------DPTR---AAA-----GITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCC---hhh-----HHHHHHHHHhccCHHHHHH
Confidence 9999999988888765443 24444455555555442 2222 111 1123334566899999999
Q ss_pred HHHhhccc
Q 000770 776 RISRLLIP 783 (1294)
Q Consensus 776 ~l~~lL~~ 783 (1294)
.++.++..
T Consensus 428 ~~~~~l~~ 435 (553)
T PRK12370 428 LGDELRSQ 435 (553)
T ss_pred HHHHHHHh
Confidence 87776654
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.00 E-value=0.11 Score=60.14 Aligned_cols=328 Identities=9% Similarity=-0.008 Sum_probs=204.3
Q ss_pred HhhhhhccccHHHHHHH-----HHHHhhhccch--HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchH
Q 000770 625 LNKLKQVELSNEQCVEM-----ALLILNQDANK--LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMF 697 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkL-----Al~~Lnq~~n~--~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~ 697 (1294)
...+...|..+-.|... |.+.+.+---. .....+|...++++.+..|....-.+.--.++.+++..+..++-+
T Consensus 62 ~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l 141 (409)
T TIGR00540 62 LRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHL 141 (409)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45677788888888766 44444443222 236788999999999999987777777677789999888888999
Q ss_pred HHhhhcCCccH-HHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHH
Q 000770 698 SYSVKHNEGSY-ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 776 (1294)
Q Consensus 698 e~AVq~~~~SY-~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~ 776 (1294)
..|.+..|.+- .+-+++......-.+ |+.|+..|-.-.+..|.+ + ++...+..+++..|+.+.|+..
T Consensus 142 ~~a~~~~p~~~l~~~~~~a~l~l~~~~----~~~Al~~l~~l~~~~P~~-----~---~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 142 EEAAELAGNDNILVEIARTRILLAQNE----LHAARHGVDKLLEMAPRH-----K---EVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HHHHHhCCcCchHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCC-----H---HHHHHHHHHHHHHhhHHHHHHH
Confidence 99999876654 456555333211111 344444444433333433 1 2333466777899999999998
Q ss_pred HHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHH
Q 000770 777 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAI 856 (1294)
Q Consensus 777 l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~ll 856 (1294)
+..+++....+. + -..++.. ..|...+ + ....+...
T Consensus 210 l~~l~k~~~~~~-~---~~~~l~~--------~a~~~~l-------------~-------------------~~~~~~~~ 245 (409)
T TIGR00540 210 IDNMAKAGLFDD-E---EFADLEQ--------KAEIGLL-------------D-------------------EAMADEGI 245 (409)
T ss_pred HHHHHHcCCCCH-H---HHHHHHH--------HHHHHHH-------------H-------------------HHHHhcCH
Confidence 888887742211 1 0000110 1111111 0 00111122
Q ss_pred HHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhH----HHHHHHHhhccc
Q 000770 857 KLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE----LVLMKARLQKHD 932 (1294)
Q Consensus 857 kLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~e----LvL~sArLqk~d 932 (1294)
+.++.+.+... +. .+-..-+.+.+...+......+.|.+++++.++..|.... ++.....+.. +
T Consensus 246 ~~L~~~~~~~p-----~~------~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~ 313 (409)
T TIGR00540 246 DGLLNWWKNQP-----RH------RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-E 313 (409)
T ss_pred HHHHHHHHHCC-----HH------HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-C
Confidence 33334443331 00 0111247788899999999999999999999999999986 4444444543 4
Q ss_pred cCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCC
Q 000770 933 FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPEST 1012 (1294)
Q Consensus 933 ~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~ 1012 (1294)
........++.++...|.+..| .+..-++.-.++.|+.+.|++.+.+ . ..+..
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~--~ll~sLg~l~~~~~~~~~A~~~le~---------------------a---~a~~~- 366 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKC--CINRALGQLLMKHGEFIEAADAFKN---------------------V---AACKE- 366 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHHHcccHHHHHHHHHH---------------------h---HHhhc-
Confidence 4566788888899998988820 2777888888999999999998741 0 00111
Q ss_pred CCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Q 000770 1013 STSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1013 ~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
.++ +..+.. |..--+-.|+..||..-+.+||+.++
T Consensus 367 ---~p~---------~~~~~~--La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 367 ---QLD---------ANDLAM--AADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred ---CCC---------HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 111 112222 23333455899999999999999887
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.97 E-value=1.3 Score=56.87 Aligned_cols=364 Identities=10% Similarity=0.019 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhhcCCCCh-HHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHH----HHHhhccCccchHHHHHHH
Q 000770 657 KKALSLLSRALEADPTSE-ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL----MYINSRTPLNHRLDAYDAA 731 (1294)
Q Consensus 657 ~~AL~vLSRALEan~~S~-~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL----~YLnsr~~fddr~~ay~ra 731 (1294)
..|+..|.++|+.+|.++ .+. .++.||...+.-++....|++||.-.+.+|..-+ .|.+. ..++.+..+|+++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~ka 128 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 588999999999999985 555 8888888888888888888999865566676666 33333 6777777777776
Q ss_pred HHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHH
Q 000770 732 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 811 (1294)
Q Consensus 732 L~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~W 811 (1294)
|.. .++. +.+ .+-+...+...|+.++|++.+..+.+.... ...-+.++-+ +....+-+-.
T Consensus 129 L~~-------dP~n-----~~~---l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL---~~~~~~~~~A 188 (822)
T PRK14574 129 LKK-------DPTN-----PDL---ISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYL---NRATDRNYDA 188 (822)
T ss_pred Hhh-------CCCC-----HHH---HHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHH---HHhcchHHHH
Confidence 532 2111 012 223455555668888888877766665322 1100111111 1011111111
Q ss_pred ------------------HHHHHHHHhccCchhHhhhcccccccc---------------cccCCCCCC-----CcchHH
Q 000770 812 ------------------VCCVYLVIYRKLPDAVLQLLECEKELF---------------AIDWPPVQL-----EDDEKQ 853 (1294)
Q Consensus 812 ------------------L~cihLv~f~~LP~~i~d~~e~~KElf---------------~I~W~~v~l-----~~~~~~ 853 (1294)
.-++.++.=..++....+-..-..++| .|-|-.-.. .-+.-+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 111111111111111111111122222 122221111 112445
Q ss_pred HHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHH-HHHHHhh-cc
Q 000770 854 RAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELV-LMKARLQ-KH 931 (1294)
Q Consensus 854 ~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLv-L~sArLq-k~ 931 (1294)
++++-++.-..... . .+...... +-..+-.+--+..+.+...+++..+.+-.....-+..+ ...|+-+ ..
T Consensus 269 ~ala~~~~l~~~~~----~--~p~~~~~~--~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 269 KALADYQNLLTRWG----K--DPEAQADY--QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred HHHHHHHHHHhhcc----C--CCccchHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 55555555555443 1 11111100 22556778888889999999999999987773333333 3333333 56
Q ss_pred ccCCccHHHHHHHHhcCCCCCC-ch-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCC
Q 000770 932 DFGDLSSVGFEEALIKWPKGVP-GI-----QCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMS 1005 (1294)
Q Consensus 932 d~~~~~~~~Feeal~~wPKea~-Gi-----Q~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s 1005 (1294)
.....+...+.+++..-|...+ .. ..|||-| |+.|+++.|..++.++-. +.| ....+ . +
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~----ld~e~~~~A~~~l~~~~~-----~~p-~~~~~-~-~--- 405 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL----NESEQLDKAYQFAVNYSE-----QTP-YQVGV-Y-G--- 405 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH----HhcccHHHHHHHHHHHHh-----cCC-cEEec-c-C---
Confidence 6688999999999987753211 12 3345544 678899999999988743 111 10000 0 0
Q ss_pred CCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcC
Q 000770 1006 HSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVREHAMLLLINES 1081 (1294)
Q Consensus 1006 ~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrEya~F~~~~~~ 1081 (1294)
++.-..|+|. +..+.++ ..+....|++.+|...+|+.++.|.+. ..+++.++-.....+.
T Consensus 406 ----~~~~~pn~d~--------~~~~~l~--a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 406 ----LPGKEPNDDW--------IEGQTLL--VQSLVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDL 465 (822)
T ss_pred ----CCCCCCCccH--------HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC
Confidence 0111113433 2333333 444578999999999999999999966 6678888877755444
No 31
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.91 E-value=0.027 Score=73.48 Aligned_cols=205 Identities=20% Similarity=0.412 Sum_probs=151.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcC-----CccHHHHHHHHhhccCccchHHHHHHHHHHHhc
Q 000770 663 LSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN-----EGSYALWLMYINSRTPLNHRLDAYDAALSVLCR 737 (1294)
Q Consensus 663 LSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~-----~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~ 737 (1294)
..|-+-++|.|+.+|+.|.--+=+-++-++..+.++.|+.-- ..--.+|--|+|.+..+... +-+.+..+-.|.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e-esl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE-ESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH-HHHHHHHHHHHH
Confidence 456677899999999999998888888888888888888642 23346899999998666532 222333333333
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHH
Q 000770 738 CASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYL 817 (1294)
Q Consensus 738 ~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihL 817 (1294)
+++|++ +.+.|+..+-.++....|.+.++..++..- +.|=.|+-|+-.
T Consensus 1526 ----------ycd~~~--V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------------------q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1526 ----------YCDAYT--VHLKLLGIYEKSEKNDEADELLRLMLKKFG--------------------QTRKVWIMYADF 1573 (1710)
T ss_pred ----------hcchHH--HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------------------chhhHHHHHHHH
Confidence 234556 788888888888888888887666555421 233456665522
Q ss_pred HHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHH
Q 000770 818 VIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAV 897 (1294)
Q Consensus 818 v~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~a 897 (1294)
++ -
T Consensus 1574 Ll-----------------------------------------------------------------------------~ 1576 (1710)
T KOG1070|consen 1574 LL-----------------------------------------------------------------------------R 1576 (1710)
T ss_pred Hh-----------------------------------------------------------------------------c
Confidence 11 1
Q ss_pred hhhHHHHHHHHHHHHHhCcc--hhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhh
Q 000770 898 LNGLECSMNLLEKYIKLYPS--CLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF 974 (1294)
Q Consensus 898 le~~E~a~~Lc~kyvelyP~--c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~ 974 (1294)
-+..|+|+.++.+.|+.-|. =+|++--.|.|. ++.+.+-|=+.||++|+..||--- +|+-|+.--+-.++.+-
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD----lW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD----LWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh----HHHHHHHHHHccCCHHH
Confidence 12346778888888888888 778888889988 888889999999999999999996 99999999999989999
Q ss_pred HHHHHHH
Q 000770 975 AAELMDR 981 (1294)
Q Consensus 975 A~~il~r 981 (1294)
++.|+.|
T Consensus 1653 vR~lfeR 1659 (1710)
T KOG1070|consen 1653 VRDLFER 1659 (1710)
T ss_pred HHHHHHH
Confidence 9999877
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.90 E-value=0.0062 Score=64.44 Aligned_cols=108 Identities=11% Similarity=0.231 Sum_probs=85.3
Q ss_pred hhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HhcCCC--CCCccchHH
Q 000770 622 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI-FYSNTN--SVGKDDMFS 698 (1294)
Q Consensus 622 ~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~L-y~q~~~--~ee~~eM~e 698 (1294)
..+.+.+..+|.|.++|..|+..++.... .+.|+..+.+|++.+|+++.+|..|-.+ |++.+. ..+...++.
T Consensus 60 ~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~-----~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 60 QALQDKIRANPQNSEQWALLGEYYLWRND-----YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 45667999999999999999998886543 5789999999999999999999999985 566555 367779999
Q ss_pred HhhhcCCccHHHHHHHHhh---ccCccchHHHHHHHHHH
Q 000770 699 YSVKHNEGSYALWLMYINS---RTPLNHRLDAYDAALSV 734 (1294)
Q Consensus 699 ~AVq~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~ 734 (1294)
.|++..|..-..|...-.. ...++++...|+++|..
T Consensus 135 ~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 135 KALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999987766666444332 36666677777776654
No 33
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.0032 Score=69.67 Aligned_cols=108 Identities=15% Similarity=0.221 Sum_probs=83.4
Q ss_pred HhhhhhccccHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 625 LNKLKQVELSNEQCVEMALLILN-QDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Ln-q~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
+.-.+..+...+.|++.|+.-.. .+. .+.|..++-+||..-|.+..+|.+|+..--....-+.....||.||..
T Consensus 25 ~~a~~~~~~~~~vy~~~A~~E~~~~~d-----~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 25 KRARKDKRCTYHVYVAYALMEYYCNKD-----PKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHHCCCCS-THHHHHHHHHHHHTCS------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 34455667889999999998443 322 256999999999999999999999999888877777778999999999
Q ss_pred CCccH---HHHHHHHhhccCccc---hHHHHHHHHHHHhc
Q 000770 704 NEGSY---ALWLMYINSRTPLNH---RLDAYDAALSVLCR 737 (1294)
Q Consensus 704 ~~~SY---~LWL~YLnsr~~fdd---r~~ay~raL~~L~~ 737 (1294)
.+... .||-.||.+|..+.+ -..++.|+.+.+-.
T Consensus 100 l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 100 LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 87777 799999999977765 44568888876544
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.61 E-value=0.14 Score=50.48 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=105.1
Q ss_pred hhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000770 886 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 964 (1294)
Q Consensus 886 ~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e 964 (1294)
-...|+..++.....++.|.+.+++.++..|...+.....+.++ ..+..+.+...|++++...|++.. +|+.++.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD----VLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHH
Confidence 45668888888899999999999999999999999988888888 444457889999999999998764 8888888
Q ss_pred HHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcc
Q 000770 965 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1044 (1294)
Q Consensus 965 ~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~ 1044 (1294)
..++.|+.+.|.+++.+-... .. .. ...-.|.+++......+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~--------------------------~~--~~----------~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIED--------------------------PL--YP----------QPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhc--------------------------cc--cc----------cchHHHHHHHHHHHHcC
Confidence 888888999999987662210 00 00 01122455677778899
Q ss_pred cHHHHHHHHHHHHHhhh
Q 000770 1045 DWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1045 ~~~EA~~A~ekALkaa~ 1061 (1294)
+..+|...++++++...
T Consensus 150 ~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDP 166 (234)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999998754
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.51 E-value=0.0035 Score=67.70 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=82.5
Q ss_pred hhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccH
Q 000770 629 KQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSY 708 (1294)
Q Consensus 629 le~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY 708 (1294)
...|.|...|+.+|..+..... .++|+..+.+||+.+|+++.++..|+.++-..+...+..+++...++-.|.+-
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~-----~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGD-----PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred cCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 3346889999999998775432 37899999999999999999999999999777766666678888888877777
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhcc
Q 000770 709 ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 782 (1294)
Q Consensus 709 ~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~ 782 (1294)
.+|..|...-.. +.-++.||..+-......+.|. .+.+.+.++|..+|+.++|+++.+.++.
T Consensus 215 ~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~--------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 DLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDP--------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-H--------HHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcc----cccccccccccccccccccccc--------cccccccccccccccccccccccccccc
Confidence 888877655332 2335555555555444444451 2566789999999999999998666553
No 36
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.50 E-value=0.35 Score=63.31 Aligned_cols=320 Identities=11% Similarity=0.094 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhhcCC--CChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHH
Q 000770 655 GMKKALSLLSRALEADP--TSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 732 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~--~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL 732 (1294)
.++.|+.+|.+-.+.+. .+..++..++..|.+.+...+.-++|..-.+-+..+|...+...-....++....++..|.
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 45778888887777664 3566677788888777665555555555444333445444444444455555555555544
Q ss_pred HHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhc-CcCCcchHH
Q 000770 733 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL-TISDKLIFW 811 (1294)
Q Consensus 733 ~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~L-T~sDRci~W 811 (1294)
.. +-..+ . . ++--|+..+|..|+++.|.+.+.......-.-|...+.. ++..+ +..+---++
T Consensus 465 ~~------Gl~pD-----~-~--tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna---LI~gy~k~G~~eeAl 527 (1060)
T PLN03218 465 EA------GLKAD-----C-K--LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA---LIDGCARAGQVAKAF 527 (1060)
T ss_pred Hc------CCCCC-----H-H--HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHCcCHHHHH
Confidence 31 11111 0 1 334477888899999999987777665432211111111 22211 111100000
Q ss_pred HHHHHHHHhccCchhHh-hhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhh
Q 000770 812 VCCVYLVIYRKLPDAVL-QLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVN 890 (1294)
Q Consensus 812 L~cihLv~f~~LP~~i~-d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN 890 (1294)
-.+--+...+--|+.+. ..+ |. .--.....+.+.++|+.....-. .+.++ ...+..
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsL--------I~---a~~k~G~~deA~~lf~eM~~~~~------gi~PD------~vTyna 584 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNAL--------IS---ACGQSGAVDRAFDVLAEMKAETH------PIDPD------HITVGA 584 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHH--------HH---HHHHCCCHHHHHHHHHHHHHhcC------CCCCc------HHHHHH
Confidence 00000001111111000 000 00 00001345566666665543210 01111 134445
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cchhHHHHHHHHhh-ccccCCccHHHHHHHHhc--CCCCCCchHHHHHHHHHHH
Q 000770 891 HIWCMAVLNGLECSMNLLEKYIKLY-PSCLELVLMKARLQ-KHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEYA 966 (1294)
Q Consensus 891 ~I~c~~ale~~E~a~~Lc~kyvely-P~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~--wPKea~GiQ~IWnQy~e~a 966 (1294)
+|.++.-...++.|.+++++..+.. +..+...-.+...+ +.+..+.+...|++.... -|.. ..|+..+...
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-----~TynsLI~a~ 659 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-----VFFSALVDVA 659 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHH
Confidence 6677777777778888887777764 23333333333333 444446777777777665 3432 3677777766
Q ss_pred HhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccH
Q 000770 967 LQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDW 1046 (1294)
Q Consensus 967 Lq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~ 1046 (1294)
...|+.+.|.+++..-.+. +. .++ ..+|..|..++++ .+++
T Consensus 660 ~k~G~~eeA~~l~~eM~k~--------------------------G~--~pd---------~~tynsLI~ay~k--~G~~ 700 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQ--------------------------GI--KLG---------TVSYSSLMGACSN--AKNW 700 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHc--------------------------CC--CCC---------HHHHHHHHHHHHh--CCCH
Confidence 6777777777776542110 00 011 3466666666644 6888
Q ss_pred HHHHHHHHHHHH
Q 000770 1047 NEARLAIDAALK 1058 (1294)
Q Consensus 1047 ~EA~~A~ekALk 1058 (1294)
+||...|++..+
T Consensus 701 eeA~~lf~eM~~ 712 (1060)
T PLN03218 701 KKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 37
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.38 E-value=2.4 Score=52.49 Aligned_cols=384 Identities=17% Similarity=0.113 Sum_probs=203.1
Q ss_pred hhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcC-CCCCCccchHHHhhhcCC
Q 000770 627 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSN-TNSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 627 ~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~-~~~ee~~eM~e~AVq~~~ 705 (1294)
.+.+-|.=.-.|.+.|..=. +.-+++.+..|+.||+.+=|.|..||++|+.--.-. +-++..++.|+.|+.++.
T Consensus 71 fL~kyPl~~gyW~kfA~~E~-----klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG 145 (577)
T KOG1258|consen 71 FLSKYPLCYGYWKKFADYEY-----KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVG 145 (577)
T ss_pred HHhhCccHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc
Confidence 45578888888888886532 245678999999999999999999999999866543 224456799999999865
Q ss_pred c---cHHHHHHHHhhccCccc---hHHHHHHHHHHHhccc------------cCCCCCccchhhHHHHHHHHHHHHHhh-
Q 000770 706 G---SYALWLMYINSRTPLNH---RLDAYDAALSVLCRCA------------SASDGDEMHASACILDLFLQMLQCFCM- 766 (1294)
Q Consensus 706 ~---SY~LWL~YLnsr~~fdd---r~~ay~raL~~L~~~a------------Sa~~~d~~~~SA~iLDl~LQml~~Lc~- 766 (1294)
- |-.+|-+||..+..-.. =..+|+|.|+-=.... +...+.. . =.|.+.|+..-.++
T Consensus 146 ~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l--~---~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 146 LDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL--L---SIDELIQLRSDVAER 220 (577)
T ss_pred cchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh--c---CHHHHHHHhhhHHhh
Confidence 4 55899999999744433 3445777764311111 0000000 0 12334444443332
Q ss_pred -----cccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhc--cccccc-c
Q 000770 767 -----SGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLL--ECEKEL-F 838 (1294)
Q Consensus 767 -----SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~--e~~KEl-f 838 (1294)
+|...+-+.. - -..+..|. ..||.+.. .+-.+..+.++ +++.. ++.|-- |
T Consensus 221 ~~~~~~~~~~e~~~~---~---v~~~~~~s--------~~l~~~~~----~l~~~~~~~~~----~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 221 SKITHSQEPLEELEI---G---VKDSTDPS--------KSLTEEKT----ILKRIVSIHEK----VYQKSEEEEEKRWGF 278 (577)
T ss_pred hhcccccChhHHHHH---H---HhhccCcc--------chhhHHHH----HHHHHHHHHHH----HHHhhHhHHHHHHhh
Confidence 1211111000 0 00111121 11222221 23333333332 23221 222222 2
Q ss_pred c--ccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCc
Q 000770 839 A--IDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYP 916 (1294)
Q Consensus 839 ~--I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP 916 (1294)
. |-=|+-+.-+.++.++.....++--.++ -+++= -..+++.||+..+-.++.-===--++|+.+
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~---------~g~~~----~~~~l~ercli~cA~Y~efWiky~~~m~~~- 344 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEIT---------LGDFS----RVFILFERCLIPCALYDEFWIKYARWMESS- 344 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhh---------cccHH----HHHHHHHHHHhHHhhhHHHHHHHHHHHHHc-
Confidence 2 4444445555667777666666544443 12211 244566666665544433211111222222
Q ss_pred chhHHHHHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccC
Q 000770 917 SCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEI 996 (1294)
Q Consensus 917 ~c~eLvL~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~ 996 (1294)
.+.+..-.+-.++....-|..|+|+-+|-...++ +|+.+.|+.++.+.-.++ .+.....-
T Consensus 345 ---------------~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~---~~n~~~A~~~lq~i~~e~--pg~v~~~l 404 (577)
T KOG1258|consen 345 ---------------GDVSLANNVLARACKIHVKKTPIIHLLEARFEES---NGNFDDAKVILQRIESEY--PGLVEVVL 404 (577)
T ss_pred ---------------CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh---hccHHHHHHHHHHHHhhC--CchhhhHH
Confidence 2222222334556667788888888887777775 457799999998877776 44433322
Q ss_pred Ccccc----CCCCCC----CCCCCCCCCCcccCCCCcchhHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHhhhhhHHHH
Q 000770 997 SDPLV----ADMSHS----SPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHR-LLQNDWNEARLAIDAALKAAASEHFKH 1067 (1294)
Q Consensus 997 ~d~~~----~~~s~~----sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~-~Lq~~~~EA~~A~ekALkaa~~e~~~h 1067 (1294)
..... +..-|. .+.+.. .... .+..-.-+.+++++.++ ...++..+|+.++-.|+.....- ++
T Consensus 405 ~~~~~e~r~~~~~~~~~~~~l~s~~--~~~~----~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~--k~ 476 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANYKNELYSSI--YEGK----ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC--KV 476 (577)
T ss_pred HHHhHHHHhcchhhhhHHHHHHHHh--cccc----cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc--HH
Confidence 22111 111110 011111 1111 11111222333344332 34678888888888777766544 89
Q ss_pred HHHHHHHHHhcCcCCCC
Q 000770 1068 CVREHAMLLLINESEPK 1084 (1294)
Q Consensus 1068 cwrEya~F~~~~~~~~~ 1084 (1294)
.|.+|.-|.+...++..
T Consensus 477 ~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 477 LYLELIRFELIQPSGRE 493 (577)
T ss_pred HHHHHHHHHHhCCcchh
Confidence 99999999998887665
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.23 E-value=1.7 Score=54.33 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=99.0
Q ss_pred HHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCC--CC------CCccc
Q 000770 624 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT--NS------VGKDD 695 (1294)
Q Consensus 624 i~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~--~~------ee~~e 695 (1294)
.+--|+.+|.++-.|+. |+..+..++. ++---+.-|||..-|.|-.||-.||..=..+. .+ ..+.+
T Consensus 16 fEeEilRnp~svk~W~R----YIe~k~~sp~--k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~ 89 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLR----YIEHKAGSPD--KQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNN 89 (835)
T ss_pred hHHHHHcCchhHHHHHH----HHHHHccCCh--HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHH
Confidence 35678999999999975 4554444322 34445678999999999999999995432221 11 12335
Q ss_pred hHHHhhhcCCccHHHHHHHHhhcc---CccchHHHHHHHHHHHhccccC----------CCCCccchhhHHHHHHHHH--
Q 000770 696 MFSYSVKHNEGSYALWLMYINSRT---PLNHRLDAYDAALSVLCRCASA----------SDGDEMHASACILDLFLQM-- 760 (1294)
Q Consensus 696 M~e~AVq~~~~SY~LWL~YLnsr~---~fddr~~ay~raL~~L~~~aSa----------~~~d~~~~SA~iLDl~LQm-- 760 (1294)
-|+.++-+.-.-=+||++|+-+=+ .+..--.+++|||-+|=...-. ++.+.--.|-.++.-.|++
T Consensus 90 c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P 169 (835)
T KOG2047|consen 90 CFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP 169 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH
Confidence 667777765556689999998732 2222345677777776543210 0111111233344444543
Q ss_pred ------HHHHhhcccHHHHHHHHHhhccccCC
Q 000770 761 ------LQCFCMSGNTEKAIQRISRLLIPATG 786 (1294)
Q Consensus 761 ------l~~Lc~SGn~~kAI~~l~~lL~~a~~ 786 (1294)
++.|+.+++...|.+++..++.-...
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f 201 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEF 201 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhh
Confidence 67889999999999998888876433
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.18 E-value=0.23 Score=57.49 Aligned_cols=305 Identities=11% Similarity=0.072 Sum_probs=166.8
Q ss_pred HhhhhhccccHHHHHHH-----HHHHhhhccch-H-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchH
Q 000770 625 LNKLKQVELSNEQCVEM-----ALLILNQDANK-L-EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMF 697 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkL-----Al~~Lnq~~n~-~-e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~ 697 (1294)
...+...|..+--|... |.+.+.+-... . -..++|...+.++-+..+......+.-...-.+++..+..++-+
T Consensus 62 ~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l 141 (398)
T PRK10747 62 LRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHL 141 (398)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33556666666666433 22222222111 1 24567777777776654444555555555557888888888999
Q ss_pred HHhhhcCCccH-HHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHH
Q 000770 698 SYSVKHNEGSY-ALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQR 776 (1294)
Q Consensus 698 e~AVq~~~~SY-~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~ 776 (1294)
+.|++..|... ...++- . .+.-+..-|+.|+..+-.-....++. . +....+.++++..|+.+.|+..
T Consensus 142 ~~A~~~~~~~~~~~~l~~--a--~l~l~~g~~~~Al~~l~~~~~~~P~~-----~---~al~ll~~~~~~~gdw~~a~~~ 209 (398)
T PRK10747 142 ERAAELADNDQLPVEITR--V--RIQLARNENHAARHGVDKLLEVAPRH-----P---EVLRLAEQAYIRTGAWSSLLDI 209 (398)
T ss_pred HHHHhcCCcchHHHHHHH--H--HHHHHCCCHHHHHHHHHHHHhcCCCC-----H---HHHHHHHHHHHHHHhHHHHHHH
Confidence 99999865553 221111 1 11111122334444443333333322 1 1233356777888999999987
Q ss_pred HHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHH-----------HHHhccCchhHhhhcccccccccccCCCC
Q 000770 777 ISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVY-----------LVIYRKLPDAVLQLLECEKELFAIDWPPV 845 (1294)
Q Consensus 777 l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cih-----------Lv~f~~LP~~i~d~~e~~KElf~I~W~~v 845 (1294)
+..+.+....++. .+..|... .|+-.+. .-..+.||...-+.-+ ....=-..
T Consensus 210 l~~l~k~~~~~~~--------~~~~l~~~----a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~-----~~~~~A~~ 272 (398)
T PRK10747 210 LPSMAKAHVGDEE--------HRAMLEQQ----AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA-----LQVAMAEH 272 (398)
T ss_pred HHHHHHcCCCCHH--------HHHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH-----HHHHHHHH
Confidence 7777766433111 11111100 1111111 1112233332100000 00000000
Q ss_pred CCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHH
Q 000770 846 QLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMK 925 (1294)
Q Consensus 846 ~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~s 925 (1294)
-..-++.+.+.++++++.+.=- ++ + ++.=+.++ ..++.+.+...+++++|.+|...+++++.
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~~----~~--------~----l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQY----DE--------R----LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC----CH--------H----HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 0112355666666666665210 11 1 11111111 23889999999999999999999999999
Q ss_pred HHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHH
Q 000770 926 ARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 926 ArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~r 981 (1294)
+|+. +.+.-+.+-..|+.++...|... .+-.++.-.-+.|.++.|.++.++
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~-----~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAY-----DYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999 55556889999999999999876 344566666778889999887654
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.06 E-value=3.3 Score=53.66 Aligned_cols=473 Identities=15% Similarity=0.155 Sum_probs=265.7
Q ss_pred hccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHH
Q 000770 630 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 709 (1294)
Q Consensus 630 e~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~ 709 (1294)
=+|.++..-+-|+..-++... ++++.+++..|.||.+-|++++.+-.+--.-|+-.+.=+.+.+..++|+++....-.
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 367999999999998888765 589999999999999999999999999999999998888899999999998733222
Q ss_pred H----HH---HHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhcc
Q 000770 710 L----WL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLI 782 (1294)
Q Consensus 710 L----WL---~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~ 782 (1294)
. +| +|= .+..|+.+---|-.++.+ +.++ ++|- .+-+-|....-|-++.|+.-+..+++
T Consensus 306 ~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~------~~d~-------~~l~-~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 306 KAESFYQLGRSYH-AQGDFEKAFKYYMESLKA------DNDN-------FVLP-LVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHHHHHH-hhccHHHHHHHHHHHHcc------CCCC-------cccc-ccchhHHHHHhchHHHHHHHHHHHHH
Confidence 2 22 222 235555555445443321 1111 1211 12244455566666666666666555
Q ss_pred ccCCCCCCccccHHHHHhhcCcCC------------------cch-----HHHHHHHHHHhccCchhHhhhcc-------
Q 000770 783 PATGSNDRHSLFLSDILTCLTISD------------------KLI-----FWVCCVYLVIYRKLPDAVLQLLE------- 832 (1294)
Q Consensus 783 ~a~~sd~p~~~sls~Il~~LT~sD------------------Rci-----~WL~cihLv~f~~LP~~i~d~~e------- 832 (1294)
.- -+++ ..|. |+-||-.+. +.. +||--.++.+=..+=.. ++-++
T Consensus 371 ~~--p~~~--etm~-iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 371 QL--PNNY--ETMK-ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILE 444 (1018)
T ss_pred hC--cchH--HHHH-HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHH
Confidence 41 1122 1222 444444443 111 67666666665544433 33322
Q ss_pred cccccccccCC----CCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHH
Q 000770 833 CEKELFAIDWP----PVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLL 908 (1294)
Q Consensus 833 ~~KElf~I~W~----~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc 908 (1294)
...-.+-++|- +-|-.-.+...+...|..|...+....|-| ..++.. .-+-=|.-||+-.+-.++.|-++-
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d-e~~~~~----lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD-EGKSTN----LTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc-ccccch----hHHHHHHHHHHHhhhhhhHHHHHH
Confidence 22222555554 223334577888888888888864222221 111111 124459999999999999999999
Q ss_pred HHHHHhCcchhHH--HHH-HHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhh
Q 000770 909 EKYIKLYPSCLEL--VLM-KARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHS 985 (1294)
Q Consensus 909 ~kyvelyP~c~eL--vL~-sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s 985 (1294)
...++.||.=++= +|. .||.+. . -..++.-|.+++.....+.. +|--+.++-|.+...-.|++=.++
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~-~-~~ea~~~lk~~l~~d~~np~----arsl~G~~~l~k~~~~~a~k~f~~---- 589 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKN-N-LYEASLLLKDALNIDSSNPN----ARSLLGNLHLKKSEWKPAKKKFET---- 589 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhcc-C-cHHHHHHHHHHHhcccCCcH----HHHHHHHHHHhhhhhcccccHHHH----
Confidence 9999999997765 443 344432 2 23556667888887777775 888888777766443345442111
Q ss_pred hhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchh--HHHHHHHHHHHH---hhcccHHHHHHHHHHHHHhh
Q 000770 986 VWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMD--VMFGYLNLSLHR---LLQNDWNEARLAIDAALKAA 1060 (1294)
Q Consensus 986 ~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D--~mf~lLNlsL~~---~Lq~~~~EA~~A~ekALkaa 1060 (1294)
. +..+++.-| .+.++=|+++-. .-++. +-++--++||+
T Consensus 590 i---------------------------------~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~-ek~kk~~~KAl--- 632 (1018)
T KOG2002|consen 590 I---------------------------------LKKTSTKTDAYSLIALGNVYIQALHNPSRNP-EKEKKHQEKAL--- 632 (1018)
T ss_pred H---------------------------------HhhhccCCchhHHHHhhHHHHHHhcccccCh-HHHHHHHHHHH---
Confidence 0 000111112 344555655533 33333 22333345554
Q ss_pred hhhHHHHHHHHHH--HHHhcCcCC--CCCCCchHHHHHHHhHHHHhhc-cCcccccc------hhHhhhcCCchhHHHHH
Q 000770 1061 ASEHFKHCVREHA--MLLLINESE--PKEGAPISWQLKLLNSYLDRAR-SLPYLKLL------PRQFINNIERPRLQQLI 1129 (1294)
Q Consensus 1061 ~~e~~~hcwrEya--~F~~~~~~~--~~~d~~~~~~~~ll~~yL~~~~-~lp~~~pL------srrfl~~I~k~rv~~li 1129 (1294)
+.|++.++-|- +|. -++-| +-...+.+.-.+||+.--.... .-+|---| ..+|...|+-= +.-.
T Consensus 633 --q~y~kvL~~dpkN~yA-ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY--e~~l 707 (1018)
T KOG2002|consen 633 --QLYGKVLRNDPKNMYA-ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY--ENCL 707 (1018)
T ss_pred --HHHHHHHhcCcchhhh-ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33444444440 010 01111 1122333444455544222211 22222222 34444333210 0000
Q ss_pred hhccCCCCCchhhHHHHHHhhhCCCCccccccCcchhHHHHHHHHhhcCchhHHHHHHHHHh
Q 000770 1130 DNLLSPVSSDFSLVNLVLEVCYGPSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLL 1191 (1294)
Q Consensus 1130 ~~~l~P~ssd~sl~N~Vle~~yg~SllPq~~~~~K~lvdfvE~imE~~P~Ny~LALav~kll 1191 (1294)
.-+. -..++.+.+.+.++|| +.++.++-++.+...+...|.|+.+-+-++=.+
T Consensus 708 -kkf~-~~~~~~vl~~Lara~y-------~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 708 -KKFY-KKNRSEVLHYLARAWY-------EAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred -HHhc-ccCCHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 0011 1256778888889998 445577777888888999999998766554433
No 41
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.02 E-value=3.3 Score=45.87 Aligned_cols=327 Identities=10% Similarity=-0.062 Sum_probs=189.8
Q ss_pred ccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHH
Q 000770 631 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 710 (1294)
Q Consensus 631 ~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~L 710 (1294)
+|.....+.-+|..++..... ++. .++.....+....+.+..+.+.+--.++..++..++..+.++.+++..|.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGER-PAA-AAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCc-chH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 588888899999777665321 111 444444444555566677788877777777877778889999999998888877
Q ss_pred HH---HHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCC
Q 000770 711 WL---MYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 787 (1294)
Q Consensus 711 WL---~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~s 787 (1294)
|. .|... ..+.++.....+++.. ......+ .......+...+...|+.+.|++.+..++..+.+.
T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~l~~----~~~~~~~-------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~ 147 (355)
T cd05804 80 LKLHLGAFGL-GDFSGMRDHVARVLPL----WAPENPD-------YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD 147 (355)
T ss_pred HHHhHHHHHh-cccccCchhHHHHHhc----cCcCCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 76 33333 3345555555555543 1111111 11122234456668999999999888777764331
Q ss_pred CCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhc
Q 000770 788 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVE 867 (1294)
Q Consensus 788 d~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~ 867 (1294)
..++....|+.. .....+.++++++.+++...
T Consensus 148 --------------------~~~~~~la~i~~----------------------------~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 148 --------------------AWAVHAVAHVLE----------------------------MQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred --------------------cHHHHHHHHHHH----------------------------HcCCHHHHHHHHHhhhhccC
Confidence 111222222221 11456677778877776543
Q ss_pred cccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchh---HHHH--HHHHhhccccCCccHHHHH
Q 000770 868 LYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCL---ELVL--MKARLQKHDFGDLSSVGFE 942 (1294)
Q Consensus 868 ~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~---eLvL--~sArLqk~d~~~~~~~~Fe 942 (1294)
. .+. ..-..+.++.+++....+++.|..++++..+..|... +++. ...+.....+......-|+
T Consensus 180 ----~---~~~----~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~ 248 (355)
T cd05804 180 ----C---SSM----LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWE 248 (355)
T ss_pred ----C---Ccc----hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHH
Confidence 1 011 1112455788899999999999999999987776322 2211 1122223333355556665
Q ss_pred HHHhcCCCCC--CchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCccc
Q 000770 943 EALIKWPKGV--PGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFS 1020 (1294)
Q Consensus 943 eal~~wPKea--~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l 1020 (1294)
.+...++... +.....+-+.+.-++..|..+.|.+++.+=- .......+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~---------------------------~~~~~~~~-- 299 (355)
T cd05804 249 DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK---------------------------GRASSADD-- 299 (355)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------------------HHHhccCc--
Confidence 5554432221 2223333356666677778899999985510 00000000
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Q 000770 1021 VSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1021 ~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
.+... ..+-..+..++...=+|+..+|...+..||..++
T Consensus 300 -~~~~~-~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 300 -NKQPA-RDVGLPLAEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred -hhhhH-HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 00111 2233334477777889999999999999998885
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.91 E-value=0.13 Score=57.22 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=84.6
Q ss_pred hhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHh
Q 000770 621 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYS 700 (1294)
Q Consensus 621 ~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~A 700 (1294)
..++.+.+.-.|.+.++|..++..+..... .++|+..+.+||+.+|+....|...-.+|+..+.-++..+.|+.|
T Consensus 84 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~-----~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 84 RNDFSQALALRPDMADAYNYLGIYLTQAGN-----FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345667888899999999999988776653 578999999999999999999999888899999888899999999
Q ss_pred hhcCCcc-HHHHHHHHh-hccCccchHHHHHHHH
Q 000770 701 VKHNEGS-YALWLMYIN-SRTPLNHRLDAYDAAL 732 (1294)
Q Consensus 701 Vq~~~~S-Y~LWL~YLn-sr~~fddr~~ay~raL 732 (1294)
++..|.+ |...|.|+. .+..++.....+.+++
T Consensus 159 l~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 159 YQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9998765 334444544 3455666666665544
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.83 E-value=1 Score=59.23 Aligned_cols=284 Identities=8% Similarity=0.043 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHhcCCCCCCccchHHHhhhc-CCccHHHHHHHHh---hccCccchHHHHH
Q 000770 655 GMKKALSLLSRALEADPT-SEILWITYLLIFYSNTNSVGKDDMFSYSVKH-NEGSYALWLMYIN---SRTPLNHRLDAYD 729 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~-S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~-~~~SY~LWL~YLn---sr~~fddr~~ay~ 729 (1294)
.++.|+.++.+..+.... +...|...+..|.+.+.-++..++|....+. ..++-..|-..|+ ....++....++.
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356777777777776554 6777888888887777665554444444321 1222233333332 2344444444444
Q ss_pred HHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcch
Q 000770 730 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI 809 (1294)
Q Consensus 730 raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci 809 (1294)
+|..- ..+-..+ . ...--|+..+|..|++++|++.++.+.+.....+...+..+ |-.+....+---
T Consensus 567 eM~~~----~~gi~PD-----~---vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL--I~ay~k~G~~de 632 (1060)
T PLN03218 567 EMKAE----THPIDPD-----H---ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDF 632 (1060)
T ss_pred HHHHh----cCCCCCc-----H---HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHhcCCHHH
Confidence 43321 0011111 0 13344677888888888888887777665433222211111 222222222111
Q ss_pred HHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHh
Q 000770 810 FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAV 889 (1294)
Q Consensus 810 ~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lal 889 (1294)
+.-.+-.+..-+--|+.+.-.. .|. .--.....+.+.++|+...+.= +.+ -...+.
T Consensus 633 Al~lf~eM~~~Gv~PD~~Tyns-------LI~---a~~k~G~~eeA~~l~~eM~k~G--------~~p------d~~tyn 688 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSA-------LVD---VAGHAGDLDKAFEILQDARKQG--------IKL------GTVSYS 688 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHH-------HHH---HHHhCCCHHHHHHHHHHHHHcC--------CCC------CHHHHH
Confidence 1111111111111121100000 000 0001234556666666654321 111 123566
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHh--CcchhHHHHHHHHhhccccCCccHHHHHHHHhc--CCCCCCchHHHHHHHHHH
Q 000770 890 NHIWCMAVLNGLECSMNLLEKYIKL--YPSCLELVLMKARLQKHDFGDLSSVGFEEALIK--WPKGVPGIQCIWNQYVEY 965 (1294)
Q Consensus 890 N~I~c~~ale~~E~a~~Lc~kyvel--yP~c~eLvL~sArLqk~d~~~~~~~~Feeal~~--wPKea~GiQ~IWnQy~e~ 965 (1294)
.+|..+.-...++.|.+++++..+. .|.....-.+..-.-+.+..+.++..|++.... .|... .|+-.+.-
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~-----Ty~sLL~a 763 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-----TYSILLVA 763 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHH
Confidence 7777888888888888888877653 455444322222223555557778888876543 23333 67777766
Q ss_pred HHhcCChhhHHHHHHH
Q 000770 966 ALQNGRHDFAAELMDR 981 (1294)
Q Consensus 966 aLq~~~~d~A~~il~r 981 (1294)
....|..+.|++++.+
T Consensus 764 ~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 764 SERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 6667788888888755
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.81 E-value=1.5 Score=51.02 Aligned_cols=250 Identities=12% Similarity=0.008 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhcc---CccchHHHHHH
Q 000770 655 GMKKALSLLSRALEADPTSE-ILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRT---PLNHRLDAYDA 730 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~-~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~---~fddr~~ay~r 730 (1294)
..++|...|.++++..|.+. .+-..|-.|+-+.+..+...+.++..++..|.+=.++-.+..... .++.....+++
T Consensus 133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 133 DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45789999999999999986 688889999999888888889999999998887766665555532 22222233333
Q ss_pred HHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcC--Ccc
Q 000770 731 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTIS--DKL 808 (1294)
Q Consensus 731 aL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~s--DRc 808 (1294)
|-.....+ + ....++-.+....+...|..+++++.+..+. +.+... +.-
T Consensus 213 ----l~k~~~~~--~-----~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~------------------~~~p~~~~~~~ 263 (409)
T TIGR00540 213 ----MAKAGLFD--D-----EEFADLEQKAEIGLLDEAMADEGIDGLLNWW------------------KNQPRHRRHNI 263 (409)
T ss_pred ----HHHcCCCC--H-----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH------------------HHCCHHHhCCH
Confidence 32221111 1 1121222222222223333333333333222 222211 223
Q ss_pred hHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhH
Q 000770 809 IFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFA 888 (1294)
Q Consensus 809 i~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~la 888 (1294)
-++++++.+.+.. +..+.+.++++.+++.-- +. .... ++
T Consensus 264 ~l~~~~a~~l~~~----------------------------g~~~~A~~~l~~~l~~~p----d~-----~~~~----~~ 302 (409)
T TIGR00540 264 ALKIALAEHLIDC----------------------------DDHDSAQEIIFDGLKKLG----DD-----RAIS----LP 302 (409)
T ss_pred HHHHHHHHHHHHC----------------------------CChHHHHHHHHHHHhhCC----Cc-----ccch----hH
Confidence 3556665544332 347778888888877643 11 0000 00
Q ss_pred hhHHHHHHH--hhhHHHHHHHHHHHHHhCcchh--HHHHHHHHhh-ccccCCccHHHHH--HHHhcCCCCCCchHHHHHH
Q 000770 889 VNHIWCMAV--LNGLECSMNLLEKYIKLYPSCL--ELVLMKARLQ-KHDFGDLSSVGFE--EALIKWPKGVPGIQCIWNQ 961 (1294)
Q Consensus 889 lN~I~c~~a--le~~E~a~~Lc~kyvelyP~c~--eLvL~sArLq-k~d~~~~~~~~Fe--eal~~wPKea~GiQ~IWnQ 961 (1294)
.++-... -+..+.+..++++.++.+|... .+++.+++++ +.+.-+.+..-|+ .++...|... ++.+
T Consensus 303 --~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-----~~~~ 375 (409)
T TIGR00540 303 --LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-----DLAM 375 (409)
T ss_pred --HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-----HHHH
Confidence 1111111 2556788999999999999999 9999999999 5555688888899 5888888766 5669
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 000770 962 YVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 962 y~e~aLq~~~~d~A~~il~r 981 (1294)
+++-+.+.|+.+.|.++.++
T Consensus 376 La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999988664
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.77 E-value=0.64 Score=60.60 Aligned_cols=268 Identities=16% Similarity=0.046 Sum_probs=183.3
Q ss_pred HHhhhhhccc--cHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhh
Q 000770 624 VLNKLKQVEL--SNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSV 701 (1294)
Q Consensus 624 i~n~vle~p~--D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AV 701 (1294)
+...+-..|. +...|..++..++.. ...+|+..+.++++.+|.+.. ..-....+.+.+.-++..+-+..++
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~~------~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRDT------LPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhC------CcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3445566688 999999999988852 346799999999999998542 2222333456666666667777777
Q ss_pred hcCCccHHHHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHH
Q 000770 702 KHNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 778 (1294)
Q Consensus 702 q~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~ 778 (1294)
.. ++....|...... ...++.+...|.+++.. . +.. ..+...+...+-..|+.+.|++.+.
T Consensus 537 ~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~----P~~--------~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 537 LH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---G----LGD--------NALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred cc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C----Ccc--------HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 76 4445556655332 35677777788887652 1 111 1123334444557799999999877
Q ss_pred hhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHH
Q 000770 779 RLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKL 858 (1294)
Q Consensus 779 ~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkL 858 (1294)
.++..... + -+|.... .++. .....+.+++.
T Consensus 601 ~AL~l~P~---~------------------~a~~~LA--~~l~--------------------------~lG~~deA~~~ 631 (987)
T PRK09782 601 RSLNIAPS---A------------------NAYVARA--TIYR--------------------------QRHNVPAAVSD 631 (987)
T ss_pred HHHHhCCC---H------------------HHHHHHH--HHHH--------------------------HCCCHHHHHHH
Confidence 77655221 1 0111111 1111 12567788888
Q ss_pred HHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCcc
Q 000770 859 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLS 937 (1294)
Q Consensus 859 fe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~ 937 (1294)
++.|+..-- +. -....|+-.++.-..+++.|+.++++.++..|...++...++.++ ..+..+.+
T Consensus 632 l~~AL~l~P----------d~-----~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 632 LRAALELEP----------NN-----SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHHhCC----------CC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 888776532 10 025667777888899999999999999999999999998888888 55555889
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHH-HHH
Q 000770 938 SVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM-DRW 982 (1294)
Q Consensus 938 ~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il-~rw 982 (1294)
...|+.++..-|..+. |-.++.+...++.+.+.|.+-+ ++|
T Consensus 697 ~~~l~~Al~l~P~~a~----i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 697 QHYARLVIDDIDNQAL----ITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHhcCCCCch----hhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986 7778888888887788887744 444
No 46
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.67 E-value=0.4 Score=58.51 Aligned_cols=235 Identities=21% Similarity=0.226 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhc---
Q 000770 726 DAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCL--- 802 (1294)
Q Consensus 726 ~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~L--- 802 (1294)
.-|++||.+|......- -| .+-+.-...+++..-|+.+.|......|+.. +.++- .-...+..|+
T Consensus 18 g~~~~AL~~L~~~~~~I-~D-------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~--~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQI-LD-------KLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNY--DYYRGLEEALGLQ 85 (517)
T ss_pred CCHHHHHHHHHhhhhhC-CC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcH--HHHHHHHHHHhhh
Confidence 44889999996533211 11 2234455677777889999999888888776 32222 2333455666
Q ss_pred -CcCCcchHHHHHHHHHH---------hccCchhHhhhcc------------ccccc---cc-ccCCCCCCCcchHHHHH
Q 000770 803 -TISDKLIFWVCCVYLVI---------YRKLPDAVLQLLE------------CEKEL---FA-IDWPPVQLEDDEKQRAI 856 (1294)
Q Consensus 803 -T~sDRci~WL~cihLv~---------f~~LP~~i~d~~e------------~~KEl---f~-I~W~~v~l~~~~~~~ll 856 (1294)
..++--+-=+-=+|--. .++||-.+..--+ ..|-. |. | .+--....-...+.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l--k~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL--KPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH--HHHHcChhHHHHHH
Confidence 33332222222222222 2222222221111 12211 11 0 00000112355667
Q ss_pred HHHHHHHHhhccccCCCccccc----cccchhhhhHhhHHHH-HHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhcc
Q 000770 857 KLIEMAVNSVELYSNGESLEKE----TNLRSAHCFAVNHIWC-MAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKH 931 (1294)
Q Consensus 857 kLfe~Av~s~~~~~~~Esl~~~----~~lr~aq~lalN~I~c-~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~ 931 (1294)
.+++.=+.+... ..+.+.+ ..-..+.+....++.- +--+-..+.|.+++++.++.-|+++||+++-||+.++
T Consensus 164 ~l~~~~~~~l~~---~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 164 SLVEEYVNSLES---NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHhhcc---cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 777777766641 1111111 1223333333333333 3357788999999999999999999999999999988
Q ss_pred ccC-CccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHH
Q 000770 932 DFG-DLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 932 d~~-~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~r 981 (1294)
.|. ..+....++|-+--+... +|=+.|+.|+|..|.++.|.+++.-
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DR----yiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADR----YINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhH----HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 866 777777788888778777 5777999999999999999999854
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.63 E-value=0.055 Score=57.42 Aligned_cols=127 Identities=8% Similarity=0.051 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHH
Q 000770 653 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAAL 732 (1294)
Q Consensus 653 ~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL 732 (1294)
.+..++++..|.++|+.||++...|..--.+|...+.-++..+.+.+|+++.|..-.+|..|...-..-.++ ..++.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-HMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-CCcHHHH
Confidence 456689999999999999999999999999999999999999999999999999999999987642111111 0123333
Q ss_pred HHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCC
Q 000770 733 SVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSN 788 (1294)
Q Consensus 733 ~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd 788 (1294)
..|-+.....+++. +..+-+-..+...|+++.|++..+.+++...+.+
T Consensus 131 ~~l~~al~~dP~~~--------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEV--------TALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHhCCCCh--------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 33333333333331 1333355566689999999999999999876644
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.57 E-value=0.02 Score=49.39 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCC-CCCCccchHHHhhhcCC
Q 000770 633 LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNT-NSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 633 ~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~-~~ee~~eM~e~AVq~~~ 705 (1294)
.+.+.|..+|..++... .+++|+..+.+||+.||+++.+|...-.+|.+.+ ...+....+++|++.+|
T Consensus 1 e~a~~~~~~g~~~~~~~-----~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQG-----DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36788999999988865 4689999999999999999999999999999998 46667788888888765
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.12 Score=63.83 Aligned_cols=225 Identities=20% Similarity=0.179 Sum_probs=168.0
Q ss_pred HHHHHH--HHHHHHHHhh-cCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCC---ccHHHHHHHHhhccCccchHH
Q 000770 653 LEGMKK--ALSLLSRALE-ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE---GSYALWLMYINSRTPLNHRLD 726 (1294)
Q Consensus 653 ~e~l~~--AL~vLSRALE-an~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~---~SY~LWL~YLnsr~~fddr~~ 726 (1294)
.+++++ +|++|+.-|= .||++++=||--=..|+.|..-+....+|+.|||..| +.|-||=.=.-.+-.||++..
T Consensus 397 LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 397 LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHH
Confidence 455443 8999999875 9999999999999999999999999999999999987 678888777777889999999
Q ss_pred HHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCC
Q 000770 727 AYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISD 806 (1294)
Q Consensus 727 ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sD 806 (1294)
.|+.||-.+-++--| +. =+--.....|+.+.|.=-++.++.. + |. .
T Consensus 477 ~fr~Al~~~~rhYnA----------wY-----GlG~vy~Kqek~e~Ae~~fqkA~~I--N---P~--n------------ 522 (638)
T KOG1126|consen 477 SFRKALGVDPRHYNA----------WY-----GLGTVYLKQEKLEFAEFHFQKAVEI--N---PS--N------------ 522 (638)
T ss_pred HHHhhhcCCchhhHH----------HH-----hhhhheeccchhhHHHHHHHhhhcC--C---cc--c------------
Confidence 999998776664332 11 1122335778888887665555544 2 21 1
Q ss_pred cchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhh
Q 000770 807 KLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHC 886 (1294)
Q Consensus 807 Rci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~ 886 (1294)
..-+||+=.+.++ ...++.++.+|+.|+.- ++ -+.+
T Consensus 523 --svi~~~~g~~~~~---------------------------~k~~d~AL~~~~~A~~l------d~----kn~l----- 558 (638)
T KOG1126|consen 523 --SVILCHIGRIQHQ---------------------------LKRKDKALQLYEKAIHL------DP----KNPL----- 558 (638)
T ss_pred --hhHHhhhhHHHHH---------------------------hhhhhHHHHHHHHHHhc------CC----CCch-----
Confidence 1224555333322 14578899999998642 11 1111
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccC-CccHHHHHHHHhcCCCCCCchH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG-DLSSVGFEEALIKWPKGVPGIQ 956 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~-~~~~~~Feeal~~wPKea~GiQ 956 (1294)
=-.+.++.+..+.+.+.|...++++.++=|.---..-+++++++..+. +.+++-|-=|+.--||.++ ||
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~-i~ 628 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ-IQ 628 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch-hh
Confidence 134678888999999999999999999999988888888999955544 8899999999999999997 54
No 50
>PLN03077 Protein ECB2; Provisional
Probab=95.37 E-value=12 Score=47.67 Aligned_cols=91 Identities=12% Similarity=-0.117 Sum_probs=60.6
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhC--cchhHHHHHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLY--PSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 964 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvely--P~c~eLvL~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e 964 (1294)
-...+|..+.-...++.|.+++++..+.. |....+..++...-+.+..+.+...|+.+...-...- ..+||-.+.
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~---~~~~n~Li~ 432 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY---VVVANALIE 432 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc---hHHHHHHHH
Confidence 35567777777777888888888776554 6666665555544455555677777777776543322 357777777
Q ss_pred HHHhcCChhhHHHHHH
Q 000770 965 YALQNGRHDFAAELMD 980 (1294)
Q Consensus 965 ~aLq~~~~d~A~~il~ 980 (1294)
-....|+.+.|.+++.
T Consensus 433 ~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 433 MYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 6677778888888763
No 51
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.34 E-value=2 Score=56.29 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhhcCCC--ChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHH--HHH-hhccCccchHHHHHHH
Q 000770 657 KKALSLLSRALEADPT--SEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWL--MYI-NSRTPLNHRLDAYDAA 731 (1294)
Q Consensus 657 ~~AL~vLSRALEan~~--S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL--~YL-nsr~~fddr~~ay~ra 731 (1294)
..+...+-+++..+|. .+..|..+-.++.. +...+..+-+..|++..|.++. .+ -|+ .....++.....|.++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4566777788888898 89988888887776 4444455667888888776543 22 111 1235566666667664
Q ss_pred HHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHH
Q 000770 732 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 811 (1294)
Q Consensus 732 L~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~W 811 (1294)
+. ..+.. . ..+.+..++...|+.+.|++.+..+++.. |...- +..
T Consensus 536 ~~-------~~p~~----~-----a~~~la~all~~Gd~~eA~~~l~qAL~l~-----P~~~~---l~~----------- 580 (987)
T PRK09782 536 SL-------HDMSN----E-----DLLAAANTAQAAGNGAARDRWLQQAEQRG-----LGDNA---LYW----------- 580 (987)
T ss_pred hc-------cCCCc----H-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CccHH---HHH-----------
Confidence 21 11111 0 12345567778899999999877776542 21100 000
Q ss_pred HHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhH
Q 000770 812 VCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH 891 (1294)
Q Consensus 812 L~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~ 891 (1294)
.++... ....+.+.++..++.|++.-- + + ..+.|+
T Consensus 581 --~La~~l---------------------------~~~Gr~~eAl~~~~~AL~l~P------~--~--------~a~~~L 615 (987)
T PRK09782 581 --WLHAQR---------------------------YIPGQPELALNDLTRSLNIAP------S--A--------NAYVAR 615 (987)
T ss_pred --HHHHHH---------------------------HhCCCHHHHHHHHHHHHHhCC------C--H--------HHHHHH
Confidence 000000 012467888999999985431 1 1 266899
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC
Q 000770 892 IWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNG 970 (1294)
Q Consensus 892 I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~ 970 (1294)
-.++.-+.+.+.|...+++.+++.|...++...++.+. ..+..+.+...|+.|+...|..+. +|+..+--.+..|
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~----a~~nLA~al~~lG 691 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA----LIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCC
Confidence 99999999999999999999999999999987776544 555568889999999999998885 8888888888888
Q ss_pred ChhhHHHHHHH
Q 000770 971 RHDFAAELMDR 981 (1294)
Q Consensus 971 ~~d~A~~il~r 981 (1294)
+++.|+..+.+
T Consensus 692 d~~eA~~~l~~ 702 (987)
T PRK09782 692 DMAATQHYARL 702 (987)
T ss_pred CHHHHHHHHHH
Confidence 99999998866
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.32 E-value=0.15 Score=56.76 Aligned_cols=180 Identities=13% Similarity=-0.015 Sum_probs=99.1
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 966 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~a 966 (1294)
+.+.-..+..+...+.|+..+.+.+++.|...+.....+.++ ..+..+.+...|+.++...|.... .|+..+.-.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l 142 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY----AYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Confidence 334444555566677777777777777777777766666665 444446777777777777777664 555555555
Q ss_pred HhcCChhhHHHHHHHHhhhhhhccc---------ccccCCcccc-------CCCCCC------CCCCCCCC----C----
Q 000770 967 LQNGRHDFAAELMDRWFHSVWKVQY---------SQVEISDPLV-------ADMSHS------SPESTSTS----D---- 1016 (1294)
Q Consensus 967 Lq~~~~d~A~~il~rwf~s~~k~~~---------~~~~~~d~~~-------~~~s~~------sl~~~~~s----~---- 1016 (1294)
.+.|+.+.|.+.+.+.+.....+.+ ......+... ..+... .+..+-.+ .
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 222 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLK 222 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHH
Confidence 5566777776666554443222110 0000000000 000000 00000000 0
Q ss_pred CcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000770 1017 PEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAASEHFKHCVRE 1071 (1294)
Q Consensus 1017 ~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e~~~hcwrE 1071 (1294)
.++-....-..+..-.|.++.+...-.|+..||..+|++|+.....+.++|=+.-
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 0000000000112236889999999999999999999999999988888886543
No 53
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.89 E-value=0.22 Score=40.81 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=73.6
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 000770 889 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 967 (1294)
Q Consensus 889 lN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aL 967 (1294)
.+...++....+++.|+.++++.++.+|.........+.++ .....+.+...|+.++...|+.. .+|...+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHH
Confidence 45566666788999999999999999999887777777777 34445788889999999888876 47888888777
Q ss_pred hcCChhhHHHHHHHHhh
Q 000770 968 QNGRHDFAAELMDRWFH 984 (1294)
Q Consensus 968 q~~~~d~A~~il~rwf~ 984 (1294)
..|..+.|.+.+.+.+.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 77788999988776543
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.56 E-value=0.65 Score=58.50 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=128.3
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 965 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~ 965 (1294)
.+.|+-+....+.++|.|..+++..++++|...+.+...+++= +...-+.+...++.+|..-|.++. .-++.+.-
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~----~~~~~a~~ 163 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR----EILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH----HHHHHHHH
Confidence 6778899999999999999999999999999999987766654 555557999999999999999995 88899999
Q ss_pred HHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhccc
Q 000770 966 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1045 (1294)
Q Consensus 966 aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~ 1045 (1294)
+.+-|.++.|.++.++ .+.. .+ |.-=.|+++...-+=.|.
T Consensus 164 l~~~g~~~~A~~~y~~--------------------------~~~~----~p----------~~~~~~~~~a~~l~~~G~ 203 (694)
T PRK15179 164 WDEIGQSEQADACFER--------------------------LSRQ----HP----------EFENGYVGWAQSLTRRGA 203 (694)
T ss_pred HHHhcchHHHHHHHHH--------------------------HHhc----CC----------CcHHHHHHHHHHHHHcCC
Confidence 9999999999999766 1111 11 111234544443355699
Q ss_pred HHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHhcCcC--CCCCCCchHHHHHHHhHHHHhh
Q 000770 1046 WNEARLAIDAALKAAASEHF------KHCVREHAMLLLINES--EPKEGAPISWQLKLLNSYLDRA 1103 (1294)
Q Consensus 1046 ~~EA~~A~ekALkaa~~e~~------~hcwrEya~F~~~~~~--~~~~d~~~~~~~~ll~~yL~~~ 1103 (1294)
.+||+.||++|++....... -.+=.+|+..-..... +...+..|-.+.++|--|=++.
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 204 LWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 99999999999999884432 2344556555554433 3445555666777776666643
No 55
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.50 E-value=0.21 Score=58.96 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=94.7
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 965 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~ 965 (1294)
|.--+++++..-.+++.|+++++++++.+|. ...++|+++ ..+....+...-.++|...|..+. +....++|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~----LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE----LLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH----HHHHHHHH
Confidence 4445578888888999999999999999986 455567776 333446778888999999999974 99999999
Q ss_pred HHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhccc
Q 000770 966 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1045 (1294)
Q Consensus 966 aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~ 1045 (1294)
+|++++.+.|+++..+ ....++ +..=.|..|+.+-...++
T Consensus 244 Ll~k~~~~lAL~iAk~--------------------------av~lsP--------------~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 244 LLSKKKYELALEIAKK--------------------------AVELSP--------------SEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHhcCCHHHHHHHHHH--------------------------HHHhCc--------------hhHHHHHHHHHHHHhcCC
Confidence 9999999999999866 112222 112246669999999999
Q ss_pred HHHHHHHHHH
Q 000770 1046 WNEARLAIDA 1055 (1294)
Q Consensus 1046 ~~EA~~A~ek 1055 (1294)
.++|-.|++.
T Consensus 284 ~e~ALlaLNs 293 (395)
T PF09295_consen 284 FENALLALNS 293 (395)
T ss_pred HHHHHHHHhc
Confidence 9999887763
No 56
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.95 E-value=2.6 Score=52.28 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhh--cCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHHHH
Q 000770 657 KKALSLLSRALE--ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSV 734 (1294)
Q Consensus 657 ~~AL~vLSRALE--an~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~ 734 (1294)
+.|..++....+ ..| +..+|..-+..|.+.+.-++...+|+...+-+.-+|..-+.-+--...++++..+|.+|+..
T Consensus 140 ~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 140 RCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 344444444444 334 46778888888888877776667777666655566666554444456777777777776632
Q ss_pred HhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHH
Q 000770 735 LCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCC 814 (1294)
Q Consensus 735 L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~c 814 (1294)
+...+. . .+..++...+..|++..|.++...+.+..-..+.....+ ++..+....+.=-.
T Consensus 219 ------g~~p~~------~--t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~---Li~~y~k~g~~~~A--- 278 (697)
T PLN03081 219 ------GSDAEP------R--TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA---LIDMYSKCGDIEDA--- 278 (697)
T ss_pred ------CCCCCh------h--hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH---HHHHHHHCCCHHHH---
Confidence 110110 0 112233444444444444443333332221111110000 11111000000000
Q ss_pred HHHHHhccCchhHhhhcccccccccccCCC---CCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhH
Q 000770 815 VYLVIYRKLPDAVLQLLECEKELFAIDWPP---VQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNH 891 (1294)
Q Consensus 815 ihLv~f~~LP~~i~d~~e~~KElf~I~W~~---v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~ 891 (1294)
.-+|+++|.. + ...|-+ .-......+.++++|+.-.+.= +.++ ..-...+
T Consensus 279 --~~vf~~m~~~---------~--~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--------~~pd------~~t~~~l 331 (697)
T PLN03081 279 --RCVFDGMPEK---------T--TVAWNSMLAGYALHGYSEEALCLYYEMRDSG--------VSID------QFTFSIM 331 (697)
T ss_pred --HHHHHhCCCC---------C--hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCCC------HHHHHHH
Confidence 0111222110 0 011110 0011245677888887654321 1122 2456788
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-cchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc
Q 000770 892 IWCMAVLNGLECSMNLLEKYIKLY-PSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 969 (1294)
Q Consensus 892 I~c~~ale~~E~a~~Lc~kyvely-P~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~ 969 (1294)
|+...-+..++.|.++....++.. +..+.+.-.+..++ +.+..+.+..+|++... | ++ ..||..+.-..+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~----~t~n~lI~~y~~~ 404 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NL----ISWNALIAGYGNH 404 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-Ce----eeHHHHHHHHHHc
Confidence 899999999999999999999886 66666777777888 44444788888887643 3 33 3799999866677
Q ss_pred CChhhHHHHHHHHh
Q 000770 970 GRHDFAAELMDRWF 983 (1294)
Q Consensus 970 ~~~d~A~~il~rwf 983 (1294)
|..+.|.+++.+-.
T Consensus 405 G~~~~A~~lf~~M~ 418 (697)
T PLN03081 405 GRGTKAVEMFERMI 418 (697)
T ss_pred CCHHHHHHHHHHHH
Confidence 79999999986633
No 57
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.90 E-value=0.57 Score=62.00 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=126.5
Q ss_pred hhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhh-cCCCCh----HHHHHHHHHHhcCCCCCCcc
Q 000770 620 SRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALE-ADPTSE----ILWITYLLIFYSNTNSVGKD 694 (1294)
Q Consensus 620 ~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALE-an~~S~----~LW~~YL~Ly~q~~~~ee~~ 694 (1294)
+-+|++-.|...|+..=+||++--.+|+-. -+++|=.+--|||- .|+.-+ -||+-||.|=--.++.++..
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~Lels-----EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELS-----EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhh-----hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 557899999999999999999766666543 24788888888887 455533 38999999977777888889
Q ss_pred chHHHhhhcCCccHHHHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHH
Q 000770 695 DMFSYSVKHNEGSYALWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 771 (1294)
Q Consensus 695 eM~e~AVq~~~~SY~LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~ 771 (1294)
+.||.|.||+ .+|-+.+..+-. --.++++...|++|+.-+-+. ..+.++..++|..-..-+
T Consensus 1518 kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~ 1581 (1710)
T KOG1070|consen 1518 KVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAE 1581 (1710)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHH
Confidence 9999999995 889988876554 267888888888888755421 125555666655333334
Q ss_pred HHHHHHHhhccccCCC-----------------CCCccccHHHHHhhcCcCC--cchHHHHHHHHHHhccCchhHhhhcc
Q 000770 772 KAIQRISRLLIPATGS-----------------NDRHSLFLSDILTCLTISD--KLIFWVCCVYLVIYRKLPDAVLQLLE 832 (1294)
Q Consensus 772 kAI~~l~~lL~~a~~s-----------------d~p~~~sls~Il~~LT~sD--Rci~WL~cihLv~f~~LP~~i~d~~e 832 (1294)
.|=.+|+.+|+..-.. |.+.-++ +.+-|-..+ |-=.|..||=..+=+.=|..+-+-|+
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt---lfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT---LFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH---HHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 4444555555553331 2221133 444444444 66689999876665444444444444
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.88 E-value=0.25 Score=47.28 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=79.9
Q ss_pred HHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 624 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 624 i~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
+..-+...|.+.+.=+.+|..++.+. .+++|+..+.++++.+|.++..|...-.+|...+...+..+++..+++.
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQG-----RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566778888888888888888664 3578999999999999999999999999998887777777899999999
Q ss_pred CCccHHHHHHHHhhc---cCccchHHHHHHHHH
Q 000770 704 NEGSYALWLMYINSR---TPLNHRLDAYDAALS 733 (1294)
Q Consensus 704 ~~~SY~LWL~YLnsr---~~fddr~~ay~raL~ 733 (1294)
.|.+...|...-..- ..++.....|++++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 988888886644442 333334444554444
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.73 E-value=3.9 Score=50.77 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=59.9
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 966 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~a 966 (1294)
-+..+|..+.--.+++.|.++.++. ..-|...-..-++.-..++...+.+..++++++...|.++. .|...+.-.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~----~y~~L~~~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN----NYVVLLNLY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc----chHHHHHHH
Confidence 4567888888888899998887652 22333322211111122444457788889999999998774 566666655
Q ss_pred HhcCChhhHHHHHHH
Q 000770 967 LQNGRHDFAAELMDR 981 (1294)
Q Consensus 967 Lq~~~~d~A~~il~r 981 (1294)
...|+.+.|.+++..
T Consensus 539 ~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 539 NSSGRQAEAAKVVET 553 (697)
T ss_pred HhCCCHHHHHHHHHH
Confidence 667799999999754
No 60
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.73 E-value=7.1 Score=49.14 Aligned_cols=266 Identities=17% Similarity=0.133 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHH---HHhhccCccchHHHHHHH
Q 000770 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM---YINSRTPLNHRLDAYDAA 731 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~---YLnsr~~fddr~~ay~ra 731 (1294)
-+..||-..-+|+|..|+...-|+-----+-.++..+..-+-|..|++++|.-|-.--. .+.-+.++.++-.+|-.|
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 45778999999999999999999987766666667777779999999999866654322 233357777788888777
Q ss_pred HHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHH
Q 000770 732 LSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFW 811 (1294)
Q Consensus 732 L~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~W 811 (1294)
+..=..-+-+ +| | +--.+-.+|++..||+..+.+++..-+..+. -.-+-.|.+.+++=||.+.
T Consensus 211 i~~qp~fAia-------ws----n----Lg~~f~~~Gei~~aiq~y~eAvkldP~f~dA-YiNLGnV~ke~~~~d~Avs- 273 (966)
T KOG4626|consen 211 IETQPCFAIA-------WS----N----LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA-YINLGNVYKEARIFDRAVS- 273 (966)
T ss_pred HhhCCceeee-------eh----h----cchHHhhcchHHHHHHHHHHhhcCCCcchHH-HhhHHHHHHHHhcchHHHH-
Confidence 6532211100 11 1 1112337899999999999999986664332 2344558888999999886
Q ss_pred HHHHHHHHhccCchhHhhhccc---ccccccccCC----CCCC----------------CcchHHHHHHHHHHHHHhhcc
Q 000770 812 VCCVYLVIYRKLPDAVLQLLEC---EKELFAIDWP----PVQL----------------EDDEKQRAIKLIEMAVNSVEL 868 (1294)
Q Consensus 812 L~cihLv~f~~LP~~i~d~~e~---~KElf~I~W~----~v~l----------------~~~~~~~llkLfe~Av~s~~~ 868 (1294)
||.+.+--+---...+-.+.| ++-++++.-. ...+ .+++.+.++....+|.+-|-.
T Consensus 274 -~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 274 -CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred -HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 555444333333333333332 2222211100 0000 012334444444444444431
Q ss_pred ccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccC-CccHHHHHHHHhc
Q 000770 869 YSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG-DLSSVGFEEALIK 947 (1294)
Q Consensus 869 ~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~-~~~~~~Feeal~~ 947 (1294)
.. +.+ -|+--...--..+|.|+.|..+.++-+|.|-+----+|-++++.|. +.+++-+.|||+.
T Consensus 353 ha--------------dam-~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 353 HA--------------DAM-NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred cH--------------HHH-HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 11 000 1333333444567899999999999999988887777777755544 8889999999999
Q ss_pred CCCCCC
Q 000770 948 WPKGVP 953 (1294)
Q Consensus 948 wPKea~ 953 (1294)
-|.-|.
T Consensus 418 ~P~fAd 423 (966)
T KOG4626|consen 418 KPTFAD 423 (966)
T ss_pred CchHHH
Confidence 998885
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.32 E-value=3.6 Score=43.34 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcC
Q 000770 724 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLT 803 (1294)
Q Consensus 724 r~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT 803 (1294)
+..+|-.+|.+|+....-.+......+-.-.+..+++...+...|+.+.|+..+..+++...+ .+ ...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--~~---~~~~a----- 72 (235)
T TIGR03302 3 LLILLLALLLLLAGCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--SP---YAEQA----- 72 (235)
T ss_pred hHHHHHHHHHHHhhccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch---hHHHH-----
Confidence 456777778777776553322111111223456788888899999999999998887665322 11 11001
Q ss_pred cCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccch
Q 000770 804 ISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRS 883 (1294)
Q Consensus 804 ~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~ 883 (1294)
.+.++.+|. ...+.+.+++.++.+++.-. ++. ...
T Consensus 73 -----~~~la~~~~------------------------------~~~~~~~A~~~~~~~l~~~p---~~~------~~~- 107 (235)
T TIGR03302 73 -----QLDLAYAYY------------------------------KSGDYAEAIAAADRFIRLHP---NHP------DAD- 107 (235)
T ss_pred -----HHHHHHHHH------------------------------hcCCHHHHHHHHHHHHHHCc---CCC------chH-
Confidence 122222222 12578889999999887553 111 000
Q ss_pred hhhhHh-hHHHHHHH--------hhhHHHHHHHHHHHHHhCcchhHHH-----------------HHHHHhh-ccccCCc
Q 000770 884 AHCFAV-NHIWCMAV--------LNGLECSMNLLEKYIKLYPSCLELV-----------------LMKARLQ-KHDFGDL 936 (1294)
Q Consensus 884 aq~lal-N~I~c~~a--------le~~E~a~~Lc~kyvelyP~c~eLv-----------------L~sArLq-k~d~~~~ 936 (1294)
.+. +.-.|+.- ....+.|++.+++.++.+|.+.... +..++++ +.+....
T Consensus 108 ---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 108 ---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred ---HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 111 11112211 2568999999999999999986432 1334445 4455678
Q ss_pred cHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 000770 937 SSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 983 (1294)
Q Consensus 937 ~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf 983 (1294)
+...|++++...|+... ....|+..+.-....|..+.|.+++...-
T Consensus 185 A~~~~~~al~~~p~~~~-~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 185 AINRFETVVENYPDTPA-TEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHCCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999998632 33566677776666779999998876543
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.15 E-value=39 Score=44.61 Aligned_cols=478 Identities=17% Similarity=0.140 Sum_probs=243.6
Q ss_pred CCCCceEEccCcccccchhhhhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHh----h--cCCCC
Q 000770 600 IGDGRIECIGSWNRQSSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRAL----E--ADPTS 673 (1294)
Q Consensus 600 ~gD~~i~v~~~~~rq~s~f~~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRAL----E--an~~S 673 (1294)
+.|..|+| +-.||- .-.+|..-+++.-.--+.||+.|+-|+.|.-+ +..+-+|.-|+ + +++++
T Consensus 12 ~sdeviei---~~~~LP---D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~-----eefi~iLE~g~~~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 12 DSDEVIEI---DCDQLP---DATEVLSILKAEQAPLEAWIEIALEYYKQGKT-----EEFIKILESGLIDANEEYADVKS 80 (1018)
T ss_pred Ccceeeee---chhcCC---ChHHHHHHHHHhcCchhHHHHHHHHHHhcccH-----HHHHHHHHhhhhcccchhcchHH
Confidence 34668886 222333 23467676777777789999999999999643 33444444444 3 67788
Q ss_pred hHHHHHHHH-HHh-----cCCCCCCccchHHHhhhcCCc-------c-----HHHHHHHHhhccCccchHHHHHHHHHHH
Q 000770 674 EILWITYLL-IFY-----SNTNSVGKDDMFSYSVKHNEG-------S-----YALWLMYINSRTPLNHRLDAYDAALSVL 735 (1294)
Q Consensus 674 ~~LW~~YL~-Ly~-----q~~~~ee~~eM~e~AVq~~~~-------S-----Y~LWL~YLnsr~~fddr~~ay~raL~~L 735 (1294)
.-.|++|.. .|+ +-....+++|.+.+|.-+... . +.-|...+...++.++.+..+...|.
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~-- 158 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLK-- 158 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHh--
Confidence 888988754 333 233355666777776544211 1 11122222223445555555544332
Q ss_pred hccccCCCCCccchhhHHHHHHHHHHHHHh-hcccHHHHHHHHHhhccccCC-CCCC----ccc---------cHHHHHh
Q 000770 736 CRCASASDGDEMHASACILDLFLQMLQCFC-MSGNTEKAIQRISRLLIPATG-SNDR----HSL---------FLSDILT 800 (1294)
Q Consensus 736 ~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc-~SGn~~kAI~~l~~lL~~a~~-sd~p----~~~---------sls~Il~ 800 (1294)
..++. ||=|+. --++. --|++-.|+...+.+|-.--. -.++ |.+ -+.+..-
T Consensus 159 -----~sp~N-------il~LlG--kA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 159 -----QSPDN-------ILALLG--KARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred -----hCCcc-------hHHHHH--HHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 22233 532322 22233 447788888877775543111 1222 111 1112333
Q ss_pred hcCcCCcchHHHHHHHHHHhccCchhHhhh-cc--------cccccccccCCCCCC-CcchHHHHHHHHHHHHHhhcccc
Q 000770 801 CLTISDKLIFWVCCVYLVIYRKLPDAVLQL-LE--------CEKELFAIDWPPVQL-EDDEKQRAIKLIEMAVNSVELYS 870 (1294)
Q Consensus 801 ~LT~sDRci~WL~cihLv~f~~LP~~i~d~-~e--------~~KElf~I~W~~v~l-~~~~~~~llkLfe~Av~s~~~~~ 870 (1294)
.|+....|+-.++-++++.+...-.-=++. +. -+..|-++---.-+. -+.+.+++..|.+.|...-.
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--- 301 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE--- 301 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---
Confidence 455666777777776666554433211111 11 011111100000111 25688999999999988876
Q ss_pred CCCccccccccchhhhhHhhHHHHHHHhhhH-----------------------------------HHHHHHHHHHHHhC
Q 000770 871 NGESLEKETNLRSAHCFAVNHIWCMAVLNGL-----------------------------------ECSMNLLEKYIKLY 915 (1294)
Q Consensus 871 ~~Esl~~~~~lr~aq~lalN~I~c~~ale~~-----------------------------------E~a~~Lc~kyvely 915 (1294)
++++.++-.. ++-|+.-+.-.+ +++.--.++..+.+
T Consensus 302 -~~~~~aes~Y--------~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 302 -NKSIKAESFY--------QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred -hhHHHHHHHH--------HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 5556555322 233444444444 44455555555555
Q ss_pred cchhHHHHHHHHhhcccc-----CCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcc
Q 000770 916 PSCLELVLMKARLQKHDF-----GDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQ 990 (1294)
Q Consensus 916 P~c~eLvL~sArLqk~d~-----~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~ 990 (1294)
|.|+|.+-++.-||...+ -+.++.+-..++..-|..+. -|=-.+ +++..+++=.++.++..
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~----a~l~la-ql~e~~d~~~sL~~~~~--------- 438 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE----AWLELA-QLLEQTDPWASLDAYGN--------- 438 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH----HHHHHH-HHHHhcChHHHHHHHHH---------
Confidence 555555444444443331 13333333344444443332 222222 22222233222222211
Q ss_pred cccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---h------
Q 000770 991 YSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAA---A------ 1061 (1294)
Q Consensus 991 ~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa---~------ 1061 (1294)
.. |++.....+ -++=++=|+.-+++.-|+..+|..-|++|++-+ +
T Consensus 439 -----A~--------------------d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 439 -----AL--------------------DILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred -----HH--------------------HHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 00 111111111 223345578888899999999999999998871 1
Q ss_pred -----------------------hhHHHHHHHHHHHHHhcCcCC---CCCCCchHHHHHHHhHHHH-hhccCcccccchh
Q 000770 1062 -----------------------SEHFKHCVREHAMLLLINESE---PKEGAPISWQLKLLNSYLD-RARSLPYLKLLPR 1114 (1294)
Q Consensus 1062 -----------------------~e~~~hcwrEya~F~~~~~~~---~~~d~~~~~~~~ll~~yL~-~~~~lp~~~pLsr 1114 (1294)
.+.|+.+.++|-.|+-....- .....+..+....|+.-|+ ++.++-++..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 256788888887776433322 2233555666777777777 7777777777775
Q ss_pred HhhhcCCchhHHH----HHhhccCCCCCchh---hHHHHHHhhhCCCCcc
Q 000770 1115 QFINNIERPRLQQ----LIDNLLSPVSSDFS---LVNLVLEVCYGPSLLP 1157 (1294)
Q Consensus 1115 rfl~~I~k~rv~~----li~~~l~P~ssd~s---l~N~Vle~~yg~SllP 1157 (1294)
=++.+-+-+..+. ..+.++.- +--|| |-|-.++..+-++--|
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTK-TDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccC-CchhHHHHhhHHHHHHhcccccCh
Confidence 5554433222332 22333332 12244 4575677766677777
No 63
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.11 E-value=0.57 Score=44.83 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=75.7
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYA 966 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~a 966 (1294)
..++..++....+++.|.+++++.++.+|...+.+..++.++ +.+....+...|+.++...|.+.. .|+.++...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~ 95 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR----PYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHH
Confidence 456777778889999999999999999999999988888777 555567888899999999999875 888888877
Q ss_pred HhcCChhhHHHHHHH
Q 000770 967 LQNGRHDFAAELMDR 981 (1294)
Q Consensus 967 Lq~~~~d~A~~il~r 981 (1294)
++.|+.+.|.+.+.+
T Consensus 96 ~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 96 LALGEPESALKALDL 110 (135)
T ss_pred HHcCCHHHHHHHHHH
Confidence 778899999887654
No 64
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.48 Score=54.17 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=74.0
Q ss_pred hhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCC---ccchHH
Q 000770 622 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVG---KDDMFS 698 (1294)
Q Consensus 622 ~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee---~~eM~e 698 (1294)
..+++++-++|+|++.|.=|+--|+++.. ..-|+..+.+|+.-.|+++.+|.-|-..++.+.+..- .++|+.
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~-----~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGR-----ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcc-----hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34577999999999999999999999864 3568899999999999999999999998777766432 349999
Q ss_pred HhhhcCCccHHHHHHHHhhc
Q 000770 699 YSVKHNEGSYALWLMYINSR 718 (1294)
Q Consensus 699 ~AVq~~~~SY~LWL~YLnsr 718 (1294)
+|++.. ++-.-=++||.+.
T Consensus 218 ~al~~D-~~~iral~lLA~~ 236 (287)
T COG4235 218 QALALD-PANIRALSLLAFA 236 (287)
T ss_pred HHHhcC-CccHHHHHHHHHH
Confidence 999995 4444446666663
No 65
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.03 E-value=0.4 Score=39.30 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHh
Q 000770 637 QCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYIN 716 (1294)
Q Consensus 637 lwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLn 716 (1294)
.|..+|..++.+ ..+++|+.++.++++.+|.+..+|..+-.+|...+..++..+.+..+++..+.....|+....
T Consensus 2 ~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKL-----GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHH-----hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 466667666653 345788999999999999988889888888888877777778899999887777766665554
Q ss_pred h
Q 000770 717 S 717 (1294)
Q Consensus 717 s 717 (1294)
.
T Consensus 77 ~ 77 (100)
T cd00189 77 A 77 (100)
T ss_pred H
Confidence 4
No 66
>PLN02789 farnesyltranstransferase
Probab=92.54 E-value=5 Score=46.31 Aligned_cols=210 Identities=15% Similarity=0.113 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCC-CCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHHHH
Q 000770 656 MKKALSLLSRALEADPTSEILWITYLLIFYSNTNS-VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSV 734 (1294)
Q Consensus 656 l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~-ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~ 734 (1294)
.++||..+..+|+.||.+.+.|..--.+...-+.. ++.-+.++.+++.+|.+|.+|-+=--.-..+. ...+.++|.+
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~--~~~~~~el~~ 130 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG--PDAANKELEF 130 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC--chhhHHHHHH
Confidence 36899999999999999999998665566555432 45557889999999999999863321111111 1234556666
Q ss_pred HhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHH
Q 000770 735 LCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCC 814 (1294)
Q Consensus 735 L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~c 814 (1294)
+...-+..++...-++ +..-++-..|+.+.||+-...++..... +.. +| .+
T Consensus 131 ~~kal~~dpkNy~AW~--------~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~s-------------------AW-~~ 181 (320)
T PLN02789 131 TRKILSLDAKNYHAWS--------HRQWVLRTLGGWEDELEYCHQLLEEDVR-NNS-------------------AW-NQ 181 (320)
T ss_pred HHHHHHhCcccHHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHHCCC-chh-------------------HH-HH
Confidence 6555554433311122 2223333447888998876666655211 111 12 11
Q ss_pred HHHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHH
Q 000770 815 VYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWC 894 (1294)
Q Consensus 815 ihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c 894 (1294)
-+.+.+ ++|. ++- .....+.. ++...+.+...-+|+| +=|+.+.
T Consensus 182 R~~vl~-~~~~-----l~~--------------~~~~~e~e---l~y~~~aI~~~P~N~S-------------aW~Yl~~ 225 (320)
T PLN02789 182 RYFVIT-RSPL-----LGG--------------LEAMRDSE---LKYTIDAILANPRNES-------------PWRYLRG 225 (320)
T ss_pred HHHHHH-hccc-----ccc--------------ccccHHHH---HHHHHHHHHhCCCCcC-------------HHHHHHH
Confidence 222222 2221 110 00112233 4444444544445542 1122222
Q ss_pred HH-H----hhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccc
Q 000770 895 MA-V----LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD 932 (1294)
Q Consensus 895 ~~-a----le~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d 932 (1294)
+. . |-+.+++...|.+.++..|.|..++.++|+++...
T Consensus 226 ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 226 LFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 11 1 22335588999999999999999999999999643
No 67
>PLN03077 Protein ECB2; Provisional
Probab=92.29 E-value=26 Score=44.75 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHH--HHHHHH
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL--VLMKAR 927 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eL--vL~sAr 927 (1294)
...+.+.++|+...+.-. +.++ ...+..+|.++.--.+++.|.++.++. ..-|...-. ++-+-+
T Consensus 603 g~v~ea~~~f~~M~~~~g-------i~P~------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYS-------ITPN------LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACR 668 (857)
T ss_pred ChHHHHHHHHHHHHHHhC-------CCCc------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Confidence 456777777776653321 1111 135678888888889999999998874 334443322 233334
Q ss_pred hhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHH
Q 000770 928 LQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELM 979 (1294)
Q Consensus 928 Lqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il 979 (1294)
+| ...+.+-.+.++++.--|+++. .|..++.-.-+.|+.+.|.++.
T Consensus 669 ~~--~~~e~~e~~a~~l~~l~p~~~~----~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 669 IH--RHVELGELAAQHIFELDPNSVG----YYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred Hc--CChHHHHHHHHHHHhhCCCCcc----hHHHHHHHHHHCCChHHHHHHH
Confidence 44 3335666778899999999885 4445444223466899888875
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.18 E-value=1.2 Score=49.93 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHH-
Q 000770 636 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMY- 714 (1294)
Q Consensus 636 elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~Y- 714 (1294)
+.-|.||+.||++.. ..+|..-|-+|||+||.+.--|..=-++|.+.+..+-.++++.+|++..|.+=.+-=+|
T Consensus 36 ~arlqLal~YL~~gd-----~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGD-----YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 456899999999864 35677778889999999999999999999999999999999999999988764442221
Q ss_pred --HhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCC
Q 000770 715 --INSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 786 (1294)
Q Consensus 715 --Lnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~ 786 (1294)
|=.+..++..+.-+.+|| ...+=++ +|.....+.+ |-...|....|-..++..|..-.+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al---~~P~Y~~------~s~t~eN~G~----Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERAL---ADPAYGE------PSDTLENLGL----CALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHHhCCChHHHHHHHHHHH---hCCCCCC------cchhhhhhHH----HHhhcCCchhHHHHHHHHHHhCcC
Confidence 233456665555555543 3333233 2323444443 566789999998888877776444
No 69
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.75 E-value=0.16 Score=37.30 Aligned_cols=27 Identities=30% Similarity=0.765 Sum_probs=24.9
Q ss_pred HHHHHHhhhccccchhhhhhhhhhhhc
Q 000770 1248 SERFFKRALSVYPFSIKLWKCYYDLSK 1274 (1294)
Q Consensus 1248 ~~rfyq~AlSvyPfs~~LWk~yl~~~k 1274 (1294)
++..|++|+...|.+..+|.+|+.|+.
T Consensus 6 ~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 6 ARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 378999999999999999999999875
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.73 E-value=1.7 Score=39.88 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=75.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhCcch---hHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000770 890 NHIWCMAVLNGLECSMNLLEKYIKLYPSC---LELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 965 (1294)
Q Consensus 890 N~I~c~~ale~~E~a~~Lc~kyvelyP~c---~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~ 965 (1294)
+....+....+++.|..++.++++.+|.+ .+.....+++. +.+....+...|+.++...|.... +..+|+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK-APDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-ccHHHHHHHHH
Confidence 44556667789999999999999999987 45666666666 444457899999999999987531 23578888888
Q ss_pred HHhcCChhhHHHHHHHHhhhhh
Q 000770 966 ALQNGRHDFAAELMDRWFHSVW 987 (1294)
Q Consensus 966 aLq~~~~d~A~~il~rwf~s~~ 987 (1294)
..+.|..+.|.+.+.+-.....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCc
Confidence 8888899999999887666643
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.70 E-value=0.57 Score=47.19 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=68.2
Q ss_pred hhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCc
Q 000770 627 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 706 (1294)
Q Consensus 627 ~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~ 706 (1294)
.+--+|.+ |..+|..+... ..++.|+..+-+++..+|.+...|...-.++.+.+.-++..+.|..|++.+|.
T Consensus 19 al~~~p~~---~~~~g~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 19 LLSVDPET---VYASGYASWQE-----GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHcCHHH---HHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 33445654 44555554432 23467788888888888888888888888888888888888888888888777
Q ss_pred cHHHHHHHHhh---ccCccchHHHHHHHHH
Q 000770 707 SYALWLMYINS---RTPLNHRLDAYDAALS 733 (1294)
Q Consensus 707 SY~LWL~YLns---r~~fddr~~ay~raL~ 733 (1294)
.+..|+..-.. ...++++..+|.++|.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776644332 3566667777777665
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.30 E-value=10 Score=47.75 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHH-HHHHHHHhcCChhhHH
Q 000770 898 LNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWN-QYVEYALQNGRHDFAA 976 (1294)
Q Consensus 898 le~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWn-Qy~e~aLq~~~~d~A~ 976 (1294)
+-.++-|..+++....-+|+-+||.++-|||.++-|-=+.-++|. ...+++----..=| .|+.|+|...+++.|.
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l----~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWL----DEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHH----HHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 345788999999999999999999999999999986544444444 33344443345667 9999999999999999
Q ss_pred HHHHHH
Q 000770 977 ELMDRW 982 (1294)
Q Consensus 977 ~il~rw 982 (1294)
++++-|
T Consensus 460 ~~~skF 465 (700)
T KOG1156|consen 460 EVLSKF 465 (700)
T ss_pred HHHHHh
Confidence 998664
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.89 E-value=0.36 Score=41.40 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCc
Q 000770 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 706 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~ 706 (1294)
.+++|+..+.++++.+|.+...|..+-.+|.+++.-++....++.+++..|.
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4689999999999999999999999999999999988888999999998764
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.42 E-value=0.49 Score=40.55 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=49.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCC
Q 000770 892 IWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKG 951 (1294)
Q Consensus 892 I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKe 951 (1294)
-+.+....+++.|+..++++++.+|.+.+....+++++ .++..+.+...|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34556677899999999999999999999999999888 5555588889999999999875
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.20 E-value=1.9 Score=43.54 Aligned_cols=92 Identities=9% Similarity=-0.153 Sum_probs=78.6
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 000770 889 VNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYAL 967 (1294)
Q Consensus 889 lN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aL 967 (1294)
.+.-..+....+++.|...+++.++..|...+.....+.+. +.+....+...|..++...|+.+. .|++.+...+
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~----a~~~lg~~l~ 103 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE----PVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHH
Confidence 35567777889999999999999999999999998887766 566668899999999999999985 8888888888
Q ss_pred hcCChhhHHHHHHHHhh
Q 000770 968 QNGRHDFAAELMDRWFH 984 (1294)
Q Consensus 968 q~~~~d~A~~il~rwf~ 984 (1294)
..|+.+.|.+.+.+...
T Consensus 104 ~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88899999999877433
No 76
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.94 E-value=0.56 Score=57.00 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=75.7
Q ss_pred ccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHH-HHHHhcCCCCCCccchHHHhhhcCCccHH
Q 000770 631 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITY-LLIFYSNTNSVGKDDMFSYSVKHNEGSYA 709 (1294)
Q Consensus 631 ~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~Y-L~Ly~q~~~~ee~~eM~e~AVq~~~~SY~ 709 (1294)
-++|+.+|+..+-. .++-+ .....-++++.+|--||+++.||+.. ..+|.-+..-+-...||..|++++|.|=.
T Consensus 101 f~~D~~lW~~yi~f--~kk~~---~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAF--CKKKK---TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred cCCCHHHHHHHHHH--HHHhc---chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 46699999865422 12211 14566678999999999999999975 57888888888888999999999999999
Q ss_pred HHHHHHhhccCccchHHHHHHH
Q 000770 710 LWLMYINSRTPLNHRLDAYDAA 731 (1294)
Q Consensus 710 LWL~YLnsr~~fddr~~ay~ra 731 (1294)
||--|...+..+-.++.+=.+.
T Consensus 176 Lw~eyfrmEL~~~~Kl~~rr~~ 197 (568)
T KOG2396|consen 176 LWKEYFRMELMYAEKLRNRREE 197 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887665553
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=89.69 E-value=1.8 Score=47.84 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=75.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHh
Q 000770 890 NHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 968 (1294)
Q Consensus 890 N~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq 968 (1294)
++-.++....+++.|.+++++.+++.|..+......+.++ ..+..+.+..-++.++..+|....-.-..|.+.+.+.++
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 5566777778899999999999999999999988888877 444457888889999999997433223467788999999
Q ss_pred cCChhhHHHHHHH
Q 000770 969 NGRHDFAAELMDR 981 (1294)
Q Consensus 969 ~~~~d~A~~il~r 981 (1294)
.|+.+.|.+++.+
T Consensus 199 ~G~~~~A~~~~~~ 211 (355)
T cd05804 199 RGDYEAALAIYDT 211 (355)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999866
No 78
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.35 E-value=0.61 Score=39.99 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHH
Q 000770 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM 713 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~ 713 (1294)
.+++|+..|.++++.+|++..+|..+-.+|.+.+..++..++++.+++..|.. .-|+.
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~ 63 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQ 63 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHH
Confidence 56888999999999999999999999999998888888888888888886553 44443
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.28 E-value=2.5 Score=47.64 Aligned_cols=147 Identities=11% Similarity=0.022 Sum_probs=112.3
Q ss_pred hhhhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchH
Q 000770 618 FRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMF 697 (1294)
Q Consensus 618 f~~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~ 697 (1294)
-+-++.+++-|..+|.+...|+-||.-|--+.++. .|=...-+||-.+|.+..|-=-|=-.-|.++..++.+-||
T Consensus 52 ~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~-----~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F 126 (250)
T COG3063 52 AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND-----LADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQF 126 (250)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh-----hHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHH
Confidence 33567788899999999999999999998887654 3344555667789999999999988888888999999999
Q ss_pred HHhhhcCCccHHHHHHHHhhc------cCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHH
Q 000770 698 SYSVKHNEGSYALWLMYINSR------TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTE 771 (1294)
Q Consensus 698 e~AVq~~~~SY~LWL~YLnsr------~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~ 771 (1294)
+.|++- |.=|..==.|.|+- ..++.+.+-|.|+|..+-+-+. .++.|....-..|+..
T Consensus 127 ~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~---------------~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 127 ERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP---------------ALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh---------------HHHHHHHHHHhcccch
Confidence 999987 55444444444442 5688899999999988766333 4567778888888888
Q ss_pred HHHHHHHhhccccC
Q 000770 772 KAIQRISRLLIPAT 785 (1294)
Q Consensus 772 kAI~~l~~lL~~a~ 785 (1294)
.|-..+.-......
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 88776665555433
No 80
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=89.27 E-value=0.38 Score=41.81 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCc
Q 000770 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 706 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~ 706 (1294)
.+++|+.++.|+++.+|+++.+|..|-.+|.+.+...+..+-++++++..|.
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4588999999999999999999999999999999888888889999888763
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.12 E-value=1 Score=55.34 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=35.0
Q ss_pred hHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHH
Q 000770 623 GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL 676 (1294)
Q Consensus 623 di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~L 676 (1294)
-++..|+|+|.++|+|.+|-..+..-+ +. ..|...|-|+||.||++-++
T Consensus 307 afEAAVkqdP~haeAW~~LG~~qaENE-~E----~~ai~AL~rcl~LdP~Nlea 355 (579)
T KOG1125|consen 307 AFEAAVKQDPQHAEAWQKLGITQAENE-NE----QNAISALRRCLELDPTNLEA 355 (579)
T ss_pred HHHHHHhhChHHHHHHHHhhhHhhhcc-ch----HHHHHHHHHHHhcCCccHHH
Confidence 357799999999999999987664322 11 45666777777777776443
No 82
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.02 E-value=4.4 Score=40.46 Aligned_cols=80 Identities=21% Similarity=0.123 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHhCcch---hHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhh
Q 000770 899 NGLECSMNLLEKYIKLYPSC---LELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF 974 (1294)
Q Consensus 899 e~~E~a~~Lc~kyvelyP~c---~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~ 974 (1294)
.....+...++++++.||.. ..-.|.+|.++ ..+.-+.+...|+.++.+.|.. .-..-.+...+...++.|..|.
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCHHH
Confidence 34556778899999999999 34457777777 4444588999999999988544 3345677889999999999999
Q ss_pred HHHHH
Q 000770 975 AAELM 979 (1294)
Q Consensus 975 A~~il 979 (1294)
|+.+|
T Consensus 104 Al~~L 108 (145)
T PF09976_consen 104 ALATL 108 (145)
T ss_pred HHHHH
Confidence 99997
No 83
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=88.91 E-value=3 Score=48.63 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=102.2
Q ss_pred hhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000770 886 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEY 965 (1294)
Q Consensus 886 ~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~ 965 (1294)
...+.+.+.+..+...+.|..++++.++. |-..+|+++.+++.. +.....+...+..+.+.|.++. +...++..
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~-~~~~~al~~~e~~lk~~P~~~~----l~l~lgrl 337 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKT-NNPEQLEKVLRQQIKQHGDTPL----LWSTLGQL 337 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccC-CChHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Confidence 36778999999999999999999999995 558899999999865 4456778899999999999985 88899999
Q ss_pred HHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhccc
Q 000770 966 ALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQND 1045 (1294)
Q Consensus 966 aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~ 1045 (1294)
+++.+..+.|++.+.+ ++... ++ +..+.++ +....=+|+
T Consensus 338 ~~~~~~~~~A~~~le~--------------------------al~~~----P~---------~~~~~~L--a~~~~~~g~ 376 (398)
T PRK10747 338 LMKHGEWQEASLAFRA--------------------------ALKQR----PD---------AYDYAWL--ADALDRLHK 376 (398)
T ss_pred HHHCCCHHHHHHHHHH--------------------------HHhcC----CC---------HHHHHHH--HHHHHHcCC
Confidence 9999999999999754 11111 11 2334444 444456789
Q ss_pred HHHHHHHHHHHHHhhh
Q 000770 1046 WNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1046 ~~EA~~A~ekALkaa~ 1061 (1294)
.+||...|.++|..+.
T Consensus 377 ~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 377 PEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999999998764
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=88.15 E-value=73 Score=41.39 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=98.4
Q ss_pred hhh-hhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHhcCCCCCCcc
Q 000770 617 FFR-SRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEA-DPTSEILWITYLLIFYSNTNSVGKD 694 (1294)
Q Consensus 617 ~f~-~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEa-n~~S~~LW~~YL~Ly~q~~~~ee~~ 694 (1294)
+.+ +.+.++.-|.-+|+|-..=.-+|+.|.-|- .+..|+....|+|+. +.++..-|-+--++|+-+.--.+.-
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R-----~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR-----QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-----hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 444 566777788889999999899999887664 468899999999998 6779999999999999888888888
Q ss_pred chHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHHHHHhc
Q 000770 695 DMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCR 737 (1294)
Q Consensus 695 eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~ 737 (1294)
+.++.|++=-+..|++--.=|..+.+|.|+..+.+...+.|.=
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 9999999887899999888889999999999888887776654
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=87.57 E-value=28 Score=36.74 Aligned_cols=149 Identities=9% Similarity=-0.048 Sum_probs=95.1
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhH---HHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE---LVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYV 963 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~e---LvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~ 963 (1294)
..+....+.....++.|+..++++++.+|.... ..+..+.++ +....+.+...|+.++...|+... +...|+..+
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~g 114 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD-ADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-hHHHHHHHH
Confidence 356667777789999999999999999998763 445566666 566668999999999999998663 334466555
Q ss_pred HHHHhc--------CChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccC-CCCcchhHHHHHH
Q 000770 964 EYALQN--------GRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSV-SNRNQMDVMFGYL 1034 (1294)
Q Consensus 964 e~aLq~--------~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~-~~s~q~D~mf~lL 1034 (1294)
....+. |..+.|.+.+.+......+.... .+.+. -.-......-..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------------------~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA------------------------PDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH------------------------HHHHHHHHHHHHHHHHHHH
Confidence 544432 45677777765543221111000 00000 0000000111124
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhh
Q 000770 1035 NLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1035 NlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
+++.+.+-+|+..+|...+++++..-.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 567777888999999999999998754
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=87.52 E-value=1.7 Score=50.36 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=55.5
Q ss_pred HHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 624 VLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 624 i~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
+.+-|...|.+.++|+.+|.-++... .++.|+..+.|||+.+|.+...|...-.+|++.+.-++....|+.|++.
T Consensus 25 ~~~Al~~~P~~~~a~~~~a~~~~~~g-----~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 25 YTQAIDLDPNNAELYADRAQANIKLG-----NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34466677777777777777666542 3567777777777777777777777777777776666666777777777
Q ss_pred CCccHH
Q 000770 704 NEGSYA 709 (1294)
Q Consensus 704 ~~~SY~ 709 (1294)
.|..-.
T Consensus 100 ~P~~~~ 105 (356)
T PLN03088 100 APGDSR 105 (356)
T ss_pred CCCCHH
Confidence 654433
No 87
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.17 E-value=0.7 Score=39.62 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCC
Q 000770 898 LNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKG 951 (1294)
Q Consensus 898 le~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKe 951 (1294)
-..++.|++++++.++.+|...++.+.+++++ +.+..+.+...|+.++...|.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 35788999999999999999999999999888 5555688888888888888886
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=86.71 E-value=1.2e+02 Score=40.12 Aligned_cols=332 Identities=18% Similarity=0.185 Sum_probs=183.6
Q ss_pred hhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccccC-CccHHHHHHHHhcCCCCCCchHHHHHH
Q 000770 883 SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDFG-DLSSVGFEEALIKWPKGVPGIQCIWNQ 961 (1294)
Q Consensus 883 ~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~~-~~~~~~Feeal~~wPKea~GiQ~IWnQ 961 (1294)
+.|.|..=-++ .|-.++|.|..+|...++.-|-..+=.-+++.++.+.|. ..++.-|.-|.-..||.-+ +|-.
T Consensus 139 l~~ll~eAN~l--farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ 212 (895)
T KOG2076|consen 139 LRQLLGEANNL--FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKR 212 (895)
T ss_pred HHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHH
Confidence 34555552223 344999999999999999999999999999999966644 7788888888889999986 9999
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHh
Q 000770 962 YVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRL 1041 (1294)
Q Consensus 962 y~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~ 1041 (1294)
+++...+.|+++.|.=...|=+ + ..| + +.-|.|=--+ +
T Consensus 213 ladls~~~~~i~qA~~cy~rAI---------~---------------~~p-----~----------n~~~~~ers~---L 250 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAI---------Q---------------ANP-----S----------NWELIYERSS---L 250 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHH---------h---------------cCC-----c----------chHHHHHHHH---H
Confidence 9999999999999987765411 0 000 0 1112222112 3
Q ss_pred hc--ccHHHHHHHHHHHHHhhhh---hHHHHHHHHHH-HHHhcCcCCCCCCCchHHHHHHHhHHHH---hhccCcccccc
Q 000770 1042 LQ--NDWNEARLAIDAALKAAAS---EHFKHCVREHA-MLLLINESEPKEGAPISWQLKLLNSYLD---RARSLPYLKLL 1112 (1294)
Q Consensus 1042 Lq--~~~~EA~~A~ekALkaa~~---e~~~hcwrEya-~F~~~~~~~~~~d~~~~~~~~ll~~yL~---~~~~lp~~~pL 1112 (1294)
++ |+...|-.-|.+++-...+ +.++...+.++ +|...+.. ....+.|.+++. +.-.+|....|
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~--------e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER--------ERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHHhhccccccccHHHHH
Confidence 33 6666666666666655552 22333333322 33322222 113455555554 22334444444
Q ss_pred hhHhhhcCCchhH-HHHH-----------------------hhccCCCCCchhhHHHHHHhhhCCCCccc-cccCcchhH
Q 000770 1113 PRQFINNIERPRL-QQLI-----------------------DNLLSPVSSDFSLVNLVLEVCYGPSLLPR-NFSKLKDLV 1167 (1294)
Q Consensus 1113 srrfl~~I~k~rv-~~li-----------------------~~~l~P~ssd~sl~N~Vle~~yg~SllPq-~~~~~K~lv 1167 (1294)
.-=||++=.-.+. +.++ -+.|-++..+.+.-=.|+.++ .+|+.- +.+++..|-
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~--icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM--ICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh--hhhhcccccchHHHHH
Confidence 4334333111111 1111 122334444444333332222 222322 233334444
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhhhccCCCCCCCchhhHHHHHHhhhhhhhhhcCcCCchHHHHHHHHHHhhhhhHHHH
Q 000770 1168 DFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEI 1247 (1294)
Q Consensus 1168 dfvE~imE~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fWA~s~L~nai~~AiPvapE~vWveAa~~l~~l~~~~~v 1247 (1294)
.|+.-=-..+-.=..|=+-|.++|..... -..++.|.. .|..-=+.-+..||+--|..+..|..-++-
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~------~~~Al~~l~------~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGK------YKEALRLLS------PITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhccc------HHHHHHHHH------HHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 44422111111223444555555433222 123444432 222223556788999999999999887776
Q ss_pred HHHHHHhhhccccchhhhhhhhhhhhcccCCHHHHHHH
Q 000770 1248 SERFFKRALSVYPFSIKLWKCYYDLSKTKGDLNTIVKA 1285 (1294)
Q Consensus 1248 ~~rfyq~AlSvyPfs~~LWk~yl~~~ks~G~~~~ivea 1285 (1294)
.-||.++|.+-|+...-=-.-=.+..-.|..++.+|+
T Consensus 469 -~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 469 -IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred -HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 8999999999999865433333344455665555554
No 89
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.63 E-value=1.5 Score=36.04 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 000770 636 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLL 682 (1294)
Q Consensus 636 elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~ 682 (1294)
++|+.||..+..+.. .++|..+|.|+|+.+|+++.+|..+-.
T Consensus 2 ~~~~~la~~~~~~G~-----~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQ-----PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568888888877653 578999999999999999999988754
No 90
>PRK11906 transcriptional regulator; Provisional
Probab=86.51 E-value=11 Score=46.08 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=95.3
Q ss_pred hccccH---HHHHHHHHHHhhhc--cchHHHHHHHHHHHHHHh---hcCCCCh-----HHHHHHHHHHhcCCCCC----C
Q 000770 630 QVELSN---EQCVEMALLILNQD--ANKLEGMKKALSLLSRAL---EADPTSE-----ILWITYLLIFYSNTNSV----G 692 (1294)
Q Consensus 630 e~p~D~---elwlkLAl~~Lnq~--~n~~e~l~~AL~vLSRAL---Ean~~S~-----~LW~~YL~Ly~q~~~~e----e 692 (1294)
..|.+. +.||.-+|..--.. ...++..++||..|-||+ |.||... -=|||..+.|.+....+ +
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 458888 99988885554444 234789999999999999 9998844 45778777776665521 1
Q ss_pred ccchHHHhhhcCCc-cHHHHHHHH--hhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhccc
Q 000770 693 KDDMFSYSVKHNEG-SYALWLMYI--NSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGN 769 (1294)
Q Consensus 693 ~~eM~e~AVq~~~~-SY~LWL~YL--nsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn 769 (1294)
..+.-+.||++.+. .+.+|++=. -....++.....+++|+. -.++. | +.....--.+.++|+
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~-------L~Pn~-----A---~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI-------HSTDI-----A---SLYYYRALVHFHNEK 387 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh-------cCCcc-----H---HHHHHHHHHHHHcCC
Confidence 12566778998765 467777766 335667777777887654 22222 1 133334445669999
Q ss_pred HHHHHHHHHhhccc
Q 000770 770 TEKAIQRISRLLIP 783 (1294)
Q Consensus 770 ~~kAI~~l~~lL~~ 783 (1294)
.+.|++.+..++..
T Consensus 388 ~~~a~~~i~~alrL 401 (458)
T PRK11906 388 IEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988777765
No 91
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.06 E-value=1.2 Score=32.62 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000770 656 MKKALSLLSRALEADPTSEILWITYLLI 683 (1294)
Q Consensus 656 l~~AL~vLSRALEan~~S~~LW~~YL~L 683 (1294)
.+.|-.++.||++..|.+..+|+.|+.+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 4667788899999999999999999875
No 92
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=85.72 E-value=0.66 Score=53.94 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=76.7
Q ss_pred cchhhhhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHhcCCCCCCc
Q 000770 615 SSFFRSRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT-YLLIFYSNTNSVGK 693 (1294)
Q Consensus 615 ~s~f~~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~-YL~Ly~q~~~~ee~ 693 (1294)
+.|+|.++.+ |+|.-+|...|-- -++. -.+...-++...+|.-+|+++.||+. .-+=|.-.+.-+.-
T Consensus 94 f~~~R~tnkf-------f~D~k~w~~y~~Y--~~k~---k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~ 161 (435)
T COG5191 94 FELYRSTNKF-------FNDPKIWSQYAAY--VIKK---KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESS 161 (435)
T ss_pred EeeehhhhcC-------CCCcHHHHHHHHH--HHHH---HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHH
Confidence 4466665544 8899999876521 1221 15677889999999999999999998 66666666666667
Q ss_pred cchHHHhhhcCCccHHHHHHHHhhccCccchHHH
Q 000770 694 DDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDA 727 (1294)
Q Consensus 694 ~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~a 727 (1294)
.-||..|+.+|+.+=.+|-.|...|..+=.|+-+
T Consensus 162 Ra~f~~glR~N~~~p~iw~eyfr~El~yiTKL~~ 195 (435)
T COG5191 162 RAMFLKGLRMNSRSPRIWIEYFRMELMYITKLIN 195 (435)
T ss_pred HHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999987666554433
No 93
>PRK11906 transcriptional regulator; Provisional
Probab=85.57 E-value=5.2 Score=48.64 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=91.4
Q ss_pred CcchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHH--H---hhhHHHHHHHHHHHHHhCcchhHHH
Q 000770 848 EDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMA--V---LNGLECSMNLLEKYIKLYPSCLELV 922 (1294)
Q Consensus 848 ~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~--a---le~~E~a~~Lc~kyvelyP~c~eLv 922 (1294)
..++..++++||+.|+..-+ ++++. -++=-.++-+|..... - =.....|+.+.++.+++.|....-+
T Consensus 270 t~~~~~~Al~lf~ra~~~~~-------ldp~~-a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~ 341 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSD-------IQTLK-TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL 341 (458)
T ss_pred CHHHHHHHHHHHHHHhhccc-------CCccc-HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 34578899999999996654 22221 1111245556665421 2 2345689999999999999999999
Q ss_pred HHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHH
Q 000770 923 LMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 923 L~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~r 981 (1294)
-+++.+. -..+-+.+...|+.|+.-.|+.++ +||-++-...-.|+.+.|.+-+.+
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~----~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKIHSTDIAS----LYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcCCccHH----HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888866 333368999999999999999997 899999877777799999888755
No 94
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.55 E-value=2.2 Score=52.25 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=47.4
Q ss_pred HhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000770 625 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI 683 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~L 683 (1294)
++-+.-.|.++++||-.|...+.-+.|. ++|=..+-|||--||+|+.||..|.++
T Consensus 129 ~~~l~~Hp~~~dLWI~aA~wefe~n~ni----~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 129 AAMLAKHPNNPDLWIYAAKWEFEINLNI----ESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHHhCCCCchhHHhhhhhHHhhccch----HHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 4477889999999999998888877764 778888999999999999999999875
No 95
>PLN02789 farnesyltranstransferase
Probab=85.50 E-value=4.5 Score=46.69 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=74.3
Q ss_pred HhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCC--CCccchHHHhhh
Q 000770 625 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNS--VGKDDMFSYSVK 702 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~--ee~~eM~e~AVq 702 (1294)
..-|.-+|.+.++|.-.+..+... ...++.||..+.++++.||++..+|-+=--++.+-+.. ++.-+.+..|++
T Consensus 61 ~~aI~lnP~~ytaW~~R~~iL~~L----~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 61 ADVIRLNPGNYTVWHFRRLCLEAL----DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHCchhHHHHHHHHHHHHHc----chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 346777999999998776554432 12478999999999999999999998776666554432 345688999999
Q ss_pred cCCccHHHHHHHHhhcc---CccchHHHHHHHHH
Q 000770 703 HNEGSYALWLMYINSRT---PLNHRLDAYDAALS 733 (1294)
Q Consensus 703 ~~~~SY~LWL~YLnsr~---~fddr~~ay~raL~ 733 (1294)
.+|..|..|-.=-..-. .+++.+..|+++|.
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999975333322 23444444444443
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.66 E-value=7.6 Score=35.63 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcch---hHHHHHHH
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC---LELVLMKA 926 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c---~eLvL~sA 926 (1294)
.+.+.+++.|+.+++.-. +. .. ......++.+++....+++.|..+++++++.+|.. .+.+...+
T Consensus 16 ~~~~~A~~~~~~~~~~~~----~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYP----KS-----TY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred CCHHHHHHHHHHHHHHCC----Cc-----cc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 466778888888876432 10 00 01245678889999999999999999999999986 56677777
Q ss_pred Hhh-ccccCCccHHHHHHHHhcCCCCCC
Q 000770 927 RLQ-KHDFGDLSSVGFEEALIKWPKGVP 953 (1294)
Q Consensus 927 rLq-k~d~~~~~~~~Feeal~~wPKea~ 953 (1294)
+++ +.+..+.+...|++++...|+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 777 445557889999999999998764
No 97
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=84.62 E-value=2.8 Score=48.57 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHH
Q 000770 899 NGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAE 977 (1294)
Q Consensus 899 e~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~ 977 (1294)
..++.|+.++++.+++.|.+.+++...+.++ +.+....++..|+.|+...|..+. .|+..+...++.|+++.|.+
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~----a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK----AYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777888888777776666666 444446777777777777777663 66777766666677777777
Q ss_pred HHHH
Q 000770 978 LMDR 981 (1294)
Q Consensus 978 il~r 981 (1294)
.+.+
T Consensus 92 ~~~~ 95 (356)
T PLN03088 92 ALEK 95 (356)
T ss_pred HHHH
Confidence 7655
No 98
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.19 E-value=2.7 Score=48.64 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhccch--HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHH-
Q 000770 637 QCVEMALLILNQDANK--LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM- 713 (1294)
Q Consensus 637 lwlkLAl~~Lnq~~n~--~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~- 713 (1294)
-..++|-++=+|-.+. ...+++|+.-..+||+.+|+++++.|-=---|++=+.-+....=|++||+++|+.-..|.+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4677888887775444 3489999999999999999999999998888888888888888999999999888888865
Q ss_pred ---HHhhccCccchHHHHHHHHH
Q 000770 714 ---YINSRTPLNHRLDAYDAALS 733 (1294)
Q Consensus 714 ---YLnsr~~fddr~~ay~raL~ 733 (1294)
|+.. ..+..+..+|.+||+
T Consensus 156 G~A~~~~-gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 156 GLAYLAL-GKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHcc-CcHHHHHHHHHhhhc
Confidence 4444 666667777888775
No 99
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.79 E-value=16 Score=41.96 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcC---ChhhHH
Q 000770 901 LECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNG---RHDFAA 976 (1294)
Q Consensus 901 ~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~---~~d~A~ 976 (1294)
.|--+.++++.++.+|.+.+|++...++. +....+.-..-|++++...|.... ||-.|+.|.+.+- +.+..+
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~----LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE----LWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHHhccCcHHHHH
Confidence 56778999999999999999988776666 444445667789999999999875 9999999999853 234444
Q ss_pred HHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHH
Q 000770 977 ELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAID 1054 (1294)
Q Consensus 977 ~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~e 1054 (1294)
.+..+=+......... . . ......+...+.+++-++.+|++-.=-|-.+-|.-++-
T Consensus 123 ~~y~~~l~~L~~~~~~---~----------------~---~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSG---R----------------M---TSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred HHHHHHHHHHHHhhcc---c----------------c---ccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 4433322211111111 0 0 00112334455788888888887554454444444333
No 100
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.29 E-value=2.7 Score=49.43 Aligned_cols=134 Identities=18% Similarity=0.207 Sum_probs=93.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCC
Q 000770 893 WCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGR 971 (1294)
Q Consensus 893 ~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~ 971 (1294)
+-++-++.++.|..+...-++..|..|.+++=-||+| .-..-+.++.-+.+++.-+|.+++.|-||= ..|.-.+ +
T Consensus 264 kvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia---~~yfY~~-~ 339 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIA---VGYFYDN-N 339 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeee---eccccCC-C
Confidence 4455667778888888888888888888888888888 444456777788888888888888777762 2244444 7
Q ss_pred hhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHH
Q 000770 972 HDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARL 1051 (1294)
Q Consensus 972 ~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~ 1051 (1294)
++.|..+-+|- |..|. +.++ .++|+.||=+--.-..=+--
T Consensus 340 PE~AlryYRRi--------------------------LqmG~-~spe-------------Lf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 340 PEMALRYYRRI--------------------------LQMGA-QSPE-------------LFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hHHHHHHHHHH--------------------------HHhcC-CChH-------------HHhhHHHHHHhhcchhhhHH
Confidence 78887777661 11111 0122 25677777676666666777
Q ss_pred HHHHHHHhhh-hhHHHHHHH
Q 000770 1052 AIDAALKAAA-SEHFKHCVR 1070 (1294)
Q Consensus 1052 A~ekALkaa~-~e~~~hcwr 1070 (1294)
.|++||.+|- ++.--..|-
T Consensus 380 sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWY 399 (478)
T ss_pred HHHHHHhhccCcchhhhhhh
Confidence 8999999998 776777884
No 101
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=83.20 E-value=52 Score=40.05 Aligned_cols=238 Identities=21% Similarity=0.268 Sum_probs=146.7
Q ss_pred HHHHhccCchhHhhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccCCCccccccccchh-hhhHhhHHHH
Q 000770 816 YLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSA-HCFAVNHIWC 894 (1294)
Q Consensus 816 hLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~a-q~lalN~I~c 894 (1294)
+-++..-||+.+.-=+++ |.++ .||+.-++++..|.++=. ++. .+| ..|-..|.-.
T Consensus 180 f~L~lSlLPp~~~kll~~------vGF~------gdR~~GL~~L~~~~~~~~--i~~---------~la~L~LL~y~~~~ 236 (468)
T PF10300_consen 180 FNLVLSLLPPKVLKLLSF------VGFS------GDRELGLRLLWEASKSEN--IRS---------PLAALVLLWYHLVV 236 (468)
T ss_pred HHHHHHhCCHHHHHHHhh------cCcC------CcHHHHHHHHHHHhccCC--cch---------HHHHHHHHHHHHHH
Confidence 455678899998665442 3333 589999999998755221 211 233 3333344333
Q ss_pred HHHhh------hHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHH---hcCCCCCCchHHHHHHHHH
Q 000770 895 MAVLN------GLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEAL---IKWPKGVPGIQCIWNQYVE 964 (1294)
Q Consensus 895 ~~ale------~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal---~~wPKea~GiQ~IWnQy~e 964 (1294)
...+. ..+.|.+++....+.||.+.=.++..+|++ .+...+.+...|+.++ +.||+-. +-|+|...-.
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~--~l~~~El~w~ 314 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLH--HLCYFELAWC 314 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHH--HHHHHHHHHH
Confidence 33333 468899999999999999999999999999 4444589999999877 4566543 4677888777
Q ss_pred HHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcc
Q 000770 965 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1044 (1294)
Q Consensus 965 ~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~ 1044 (1294)
|+++. +.+.|.+...+- .+ + ++---.+|.|+-=|.| .-.+
T Consensus 315 ~~~~~-~w~~A~~~f~~L----~~---------------------~-------------s~WSka~Y~Y~~a~c~-~~l~ 354 (468)
T PF10300_consen 315 HMFQH-DWEEAAEYFLRL----LK---------------------E-------------SKWSKAFYAYLAAACL-LMLG 354 (468)
T ss_pred HHHHc-hHHHHHHHHHHH----Hh---------------------c-------------cccHHHHHHHHHHHHH-Hhhc
Confidence 88888 788888776441 00 0 1111467888844444 4444
Q ss_pred cHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhcCcCCCCCCCchHHH-HHHHhHHHHhh--------ccCcccccc-
Q 000770 1045 DWNEARLAIDAALKAAA--SEHFKHCVREHAMLLLINESEPKEGAPISWQ-LKLLNSYLDRA--------RSLPYLKLL- 1112 (1294)
Q Consensus 1045 ~~~EA~~A~ekALkaa~--~e~~~hcwrEya~F~~~~~~~~~~d~~~~~~-~~ll~~yL~~~--------~~lp~~~pL- 1112 (1294)
+..+|....++|.+... +..+ ....+ +..|+-.+ .+.+..|..+. -.+|+.|.+
T Consensus 355 ~~~~~~~~~~~a~~l~~~vp~l~------------~k~~g--k~lp~E~Fv~RK~~~~~~~~~~~~~d~~~~~p~~El~y 420 (468)
T PF10300_consen 355 REEEAKEHKKEAEELFRKVPKLK------------QKKAG--KSLPLEKFVIRKAQKYEKQAKVDLVDAILVLPALELMY 420 (468)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH------------hhhcc--CCCChHHHHHHHHHHHHhcCCCcchhhhhcCHHHHHHH
Confidence 44444444444444333 1100 11122 34455553 36666766653 577888877
Q ss_pred hhHhhhcCCchhHH-HHHhhc
Q 000770 1113 PRQFINNIERPRLQ-QLIDNL 1132 (1294)
Q Consensus 1113 srrfl~~I~k~rv~-~li~~~ 1132 (1294)
.|.-...+++..++ +.+..+
T Consensus 421 ~WNg~~~~~~~~l~~~~~~~l 441 (468)
T PF10300_consen 421 FWNGFPRMPKEELEIKSLLEL 441 (468)
T ss_pred HHhccccCChHHHHHHHHHHH
Confidence 58888888888777 444444
No 102
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.73 E-value=0.88 Score=52.98 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=44.3
Q ss_pred HhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000770 625 LNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLI 683 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~L 683 (1294)
.+-+...|.|+++||--+---+...+|. ++|-+.+-|||--||.++.||..|.++
T Consensus 131 ~~~l~khP~nvdlWI~~c~~e~~~~ani----~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 131 AECLTKHPLNVDLWIYCCAFELFEIANI----ESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHhcCCCCceeeeeeccchhhhhccH----HHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 3477889999999998554445555544 777888999999999999999999875
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.67 E-value=9 Score=48.75 Aligned_cols=138 Identities=10% Similarity=-0.018 Sum_probs=101.3
Q ss_pred hccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHH
Q 000770 630 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA 709 (1294)
Q Consensus 630 e~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~ 709 (1294)
.-|.+++.-+=||...... -.++.|+.+|.+++|..|+++..|..|..+-.+...-++.-+-++++++..|.+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~-----g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAA-----HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 3455555444444443333 25688999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCC
Q 000770 710 LWLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 786 (1294)
Q Consensus 710 LWL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~ 786 (1294)
.=.+.--. -...++++.+|+++|. ..+... +..+-.-.+|--.|+.+.|.+.+..++....+
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~------------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSR---QHPEFE------------NGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 66554433 2667778888888776 222110 13344556666789999999988888777555
Q ss_pred C
Q 000770 787 S 787 (1294)
Q Consensus 787 s 787 (1294)
+
T Consensus 221 ~ 221 (694)
T PRK15179 221 G 221 (694)
T ss_pred c
Confidence 3
No 104
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=80.89 E-value=0.6 Score=51.67 Aligned_cols=66 Identities=30% Similarity=0.519 Sum_probs=42.7
Q ss_pred cccCCCcc-ccceeeeccccccCCCCCchhhhhcccccCCCCCCCCCCCcccccccCccccCCCccccCcccccCCCcce
Q 000770 472 CNLAIDPL-WPLCMYELRGKCNNDECPWQHVKYFADRNKNLHDDSDSAGCQIGSTIPQEHCNVGTKLSKGHDILTPPTYI 550 (1294)
Q Consensus 472 ~s~~~dp~-~plc~fel~g~Cn~~~c~wQH~~d~~~~~~~~h~~s~~~~~q~~~s~~~~~~n~~t~~s~~~~i~~~PtY~ 550 (1294)
.|+..||- -|-|+|-|.||||+..|++-|+.. +-. -+-|-.---|..-..+ | .-+-|||+-+..|-
T Consensus 252 lsheldprripacryfllgkcnnpncryvhihy-sen---------apicfefakygfcelg--t-scknqhilqctdya 318 (377)
T KOG1492|consen 252 LSHELDPRRIPACRYFLLGKCNNPNCRYVHIHY-SEN---------APICFEFAKYGFCELG--T-SCKNQHILQCTDYA 318 (377)
T ss_pred cccccCccccchhhhhhhccCCCCCceEEEEee-cCC---------Cceeeeehhcceeccc--c-ccccceeeeecchh
Confidence 37889996 499999999999999999988632 211 2444444444432222 2 22557777776654
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=80.73 E-value=2.3 Score=36.95 Aligned_cols=57 Identities=25% Similarity=0.205 Sum_probs=47.1
Q ss_pred HHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCC
Q 000770 896 AVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGV 952 (1294)
Q Consensus 896 ~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea 952 (1294)
.--+.++.|+..+++.+++.|..+.++...+.++ +.+....+...|+.++...|.+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3457789999999999999999999998888888 55555888899999998888654
No 106
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=80.06 E-value=5.8 Score=47.37 Aligned_cols=91 Identities=20% Similarity=0.160 Sum_probs=77.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhc
Q 000770 891 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQN 969 (1294)
Q Consensus 891 ~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~ 969 (1294)
+++++...+.-..|++++.+.++..|...+|+.+-|+.. +++..+.++.....|..-.|.+-. -|++.++.-++.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~----~W~~La~~Yi~~ 281 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE----TWYQLAECYIQL 281 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhc
Confidence 556666678888999999999999999999999888877 666679999999999999998884 999999977778
Q ss_pred CChhhHHHHHHHHhhhhhhc
Q 000770 970 GRHDFAAELMDRWFHSVWKV 989 (1294)
Q Consensus 970 ~~~d~A~~il~rwf~s~~k~ 989 (1294)
|.++.|+-.| +++.-.
T Consensus 282 ~d~e~ALlaL----Ns~Pm~ 297 (395)
T PF09295_consen 282 GDFENALLAL----NSCPML 297 (395)
T ss_pred CCHHHHHHHH----hcCcCC
Confidence 8999999887 666633
No 107
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.74 E-value=1.5e+02 Score=38.38 Aligned_cols=296 Identities=19% Similarity=0.177 Sum_probs=192.2
Q ss_pred hhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHH--
Q 000770 622 NGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY-- 699 (1294)
Q Consensus 622 ~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~-- 699 (1294)
.++.+|.+..+.....-++||-+.+..-. +++|+..----.-.||++-.--++--.||+|-... ||+..
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd-----~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~----d~s~a~~ 105 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGD-----YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRL----DKSSAGS 105 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccC-----HHHHHHHHhHhhccCCCcccceeeehhhhhcccch----hhhhhhh
Confidence 46677888888888888999988775532 23333333333446777766666777788776554 44443
Q ss_pred --hhhcCC---ccHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHH
Q 000770 700 --SVKHNE---GSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAI 774 (1294)
Q Consensus 700 --AVq~~~---~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI 774 (1294)
|++-++ ..|.-.-.++.-|..|++++..|.+|++-= + + ..|--+-+.-+|...|+.+.|.
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------p-~-------fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK-------P-K-------FIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------c-h-------hhHHHhhHHHHHHhcCCCcccH
Confidence 444433 456656667777999999999999988521 1 1 2355556677777888899898
Q ss_pred HHHHhhccccCCCCCCccccHHHHHhhcCcCCcch-HHHHHHHHHHhccCchhHhhhcccccccccccCC---CCCCCcc
Q 000770 775 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLI-FWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWP---PVQLEDD 850 (1294)
Q Consensus 775 ~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci-~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~---~v~l~~~ 850 (1294)
+-.+.+|+..-. .- +..++.-.-|...-|.. +-.||.-.++ .=| .|.|.|. ++=-..+
T Consensus 171 ~~~~~alqlnP~--l~--ca~s~lgnLlka~Grl~ea~~cYlkAi~--~qp------------~fAiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 171 QCFFEALQLNPD--LY--CARSDLGNLLKAEGRLEEAKACYLKAIE--TQP------------CFAIAWSNLGCVFNAQG 232 (966)
T ss_pred HHHHHHHhcCcc--hh--hhhcchhHHHHhhcccchhHHHHHHHHh--hCC------------ceeeeehhcchHHhhcc
Confidence 877777766221 00 01111111122122221 2233333322 222 6999999 4444467
Q ss_pred hHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhc
Q 000770 851 EKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQK 930 (1294)
Q Consensus 851 ~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk 930 (1294)
+-..++.-||.||.-=-.|. .-++|+=-.+...-.++.|+.--.+.+.+-|..-+-.--+|-++.
T Consensus 233 ei~~aiq~y~eAvkldP~f~---------------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFL---------------DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred hHHHHHHHHHHhhcCCCcch---------------HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 88999999999986432222 357788888888999999999999999999998888777777884
Q ss_pred cc-cCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 000770 931 HD-FGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 978 (1294)
Q Consensus 931 ~d-~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~i 978 (1294)
.. .-+.+...++.||+.-|+=-. -+|-.+--+=+.|+.+.|...
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~----Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPD----AYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchH----HHhHHHHHHHhccchHHHHHH
Confidence 44 448999999999999998653 455555555566666666555
No 108
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=77.68 E-value=6.5 Score=33.90 Aligned_cols=62 Identities=21% Similarity=0.000 Sum_probs=51.4
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhcccc--CCccHHHHHHHHhcCC
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHDF--GDLSSVGFEEALIKWP 949 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d~--~~~~~~~Feeal~~wP 949 (1294)
..++=.++.-..+++.|+..+.+.++.+|...++....+.++...+ ...++.-|+.+++..|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456667777899999999999999999999999988888884443 5788888998888776
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=77.67 E-value=13 Score=37.77 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=64.8
Q ss_pred hhhhhhhHHhhhhhcccc--HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhcCCCCC
Q 000770 617 FFRSRNGVLNKLKQVELS--NEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSV 691 (1294)
Q Consensus 617 ~f~~~~di~n~vle~p~D--~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S---~~LW~~YL~Ly~q~~~~e 691 (1294)
|.+.++.+...+.+.+.+ .+.|.-++..+.... ..+.|+..+.+||+..|.+ ...|...-.+|.+.+..+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g-----~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEG-----EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 445566663333466666 667777777666443 2578999999999876653 357888888999999999
Q ss_pred CccchHHHhhhcCCccHHHH
Q 000770 692 GKDDMFSYSVKHNEGSYALW 711 (1294)
Q Consensus 692 e~~eM~e~AVq~~~~SY~LW 711 (1294)
+..+.+++|++..|..-..|
T Consensus 90 eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 90 KALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHH
Confidence 99999999999965444443
No 110
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.80 E-value=33 Score=42.03 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=74.4
Q ss_pred hccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHH---HHHHHHHHhcCCCCCCccchHHHhhhcCCc
Q 000770 630 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEIL---WITYLLIFYSNTNSVGKDDMFSYSVKHNEG 706 (1294)
Q Consensus 630 e~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~L---W~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~ 706 (1294)
.+|.+.++|+.++..+.... .++.|+..+.+|||.||++.+. |..=--.|.+.+..++..+.+..|++.+..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG-----ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG-----RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 67999999999999887653 5789999999999999999865 655556777888888888999999997444
Q ss_pred cHHHHHHHHhhccCccc--hHHHHHHHHHHHhccc
Q 000770 707 SYALWLMYINSRTPLNH--RLDAYDAALSVLCRCA 739 (1294)
Q Consensus 707 SY~LWL~YLnsr~~fdd--r~~ay~raL~~L~~~a 739 (1294)
.|. ++.....|+. .+.-+++++..+....
T Consensus 145 ~f~----~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 145 KFS----TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred hHH----HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 444 4444343332 3345666666666543
No 111
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=74.73 E-value=18 Score=37.05 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=75.6
Q ss_pred hhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 627 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS---EILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 627 ~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S---~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
.+..++.....+..+|..++... ..++|+..+.+|++.+|.. ..+|...-.+|.+.+.-++....+.+|++.
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADG-----EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666667777777766543 3468888888999877664 468888888999998888888999999999
Q ss_pred CCccHHHHHHHHhhc----------cCccchHHHHHHHHHHHhcccc
Q 000770 704 NEGSYALWLMYINSR----------TPLNHRLDAYDAALSVLCRCAS 740 (1294)
Q Consensus 704 ~~~SY~LWL~YLnsr----------~~fddr~~ay~raL~~L~~~aS 740 (1294)
.|.....|..+-... ..++.+...|++++.++-+.-.
T Consensus 102 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 887777765433332 2234455557777776655433
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=74.49 E-value=15 Score=45.15 Aligned_cols=144 Identities=14% Similarity=0.074 Sum_probs=91.1
Q ss_pred hhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCc
Q 000770 627 KLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEG 706 (1294)
Q Consensus 627 ~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~ 706 (1294)
.+.+-|.|.=+|.-..-.++..+- ..+|+..+.+|+-.+|.+..||+.|-..|=+.+.+.+..-. .+.-.++.+
T Consensus 332 L~~~~P~N~~~~~~~~~i~~~~nk-----~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~-L~~~~~~~p 405 (484)
T COG4783 332 LIAAQPDNPYYLELAGDILLEANK-----AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI-LNRYLFNDP 405 (484)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH-HHHHhhcCC
Confidence 666777777666655555554432 36788888888888888888888888888777777643322 233334467
Q ss_pred cHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCC
Q 000770 707 SYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATG 786 (1294)
Q Consensus 707 SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~ 786 (1294)
.+..||.||.- +|.+. + + .-+-.+-..+.+..+|+++.||..+..+.+-...
T Consensus 406 ~dp~~w~~LAq---------ay~~~---------g---~-------~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 406 EDPNGWDLLAQ---------AYAEL---------G---N-------RAEALLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCchHHHHHHH---------HHHHh---------C---c-------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 88888888765 33330 1 1 0011222445566799999999988877776544
Q ss_pred CCCCccccHHHHHhhcCcC
Q 000770 787 SNDRHSLFLSDILTCLTIS 805 (1294)
Q Consensus 787 sd~p~~~sls~Il~~LT~s 805 (1294)
+-+.|.-.-|++..++..
T Consensus 458 -~~~~~aR~dari~~~~~~ 475 (484)
T COG4783 458 -GFPDWARADARIDQLRQQ 475 (484)
T ss_pred -CcHHHHHHHHHHHHHHHH
Confidence 445455555566666554
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.76 E-value=16 Score=41.35 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHhCcchh---HHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhh
Q 000770 899 NGLECSMNLLEKYIKLYPSCL---ELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDF 974 (1294)
Q Consensus 899 e~~E~a~~Lc~kyvelyP~c~---eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~ 974 (1294)
.+++.|+..++++++.||... +....++.++ .+...+.+...|..++.++|+...-.. .|+..+.-....|..+.
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d-Al~klg~~~~~~g~~~~ 235 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD-AMFKVGVIMQDKGDTAK 235 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH-HHHHHHHHHHHcCCHHH
Confidence 578999999999999999984 6677777777 555568999999999999998754334 45555555556779999
Q ss_pred HHHHHHHHhhhhh
Q 000770 975 AAELMDRWFHSVW 987 (1294)
Q Consensus 975 A~~il~rwf~s~~ 987 (1294)
|++++.+-...+.
T Consensus 236 A~~~~~~vi~~yP 248 (263)
T PRK10803 236 AKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHCc
Confidence 9999877655443
No 114
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.26 E-value=8.2 Score=31.67 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=35.1
Q ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHh
Q 000770 888 AVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL 928 (1294)
Q Consensus 888 alN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArL 928 (1294)
...+-+.+..+..++.|..++++.++.+|.+.+....++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 34567788889999999999999999999999998887764
No 115
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.60 E-value=5 Score=50.30 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=70.4
Q ss_pred hhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCC
Q 000770 626 NKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 626 n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~ 705 (1294)
+.|.=.|.+.-+|-=|-..|+-|+. ++.|+.-+-+|+|.||.+.+|-|++-.+|.+.+..+..-++++.|+...|
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek-----~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEK-----LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccch-----hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 7889999999999999999998764 58899999999999999999999999999999999999999999999865
Q ss_pred cc
Q 000770 706 GS 707 (1294)
Q Consensus 706 ~S 707 (1294)
-+
T Consensus 555 kn 556 (638)
T KOG1126|consen 555 KN 556 (638)
T ss_pred CC
Confidence 43
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.80 E-value=2.7e+02 Score=35.76 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=115.8
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHH-----------------------hhcCcCCcchHHH
Q 000770 756 LFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDIL-----------------------TCLTISDKLIFWV 812 (1294)
Q Consensus 756 l~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il-----------------------~~LT~sDRci~WL 812 (1294)
+-+||...|-+.|.+++|.++...+++--.. |+| +++-+. .|.|..|.|..-|
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~---~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEP---SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-Cch---HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 5689999999999999999987777765322 222 222111 2333333333333
Q ss_pred HHHHHHHhccCchhHhhhcc-----cccccccccCCCCCC-CcchHHHHHH----HHHHHHHhhccccCCCccccccccc
Q 000770 813 CCVYLVIYRKLPDAVLQLLE-----CEKELFAIDWPPVQL-EDDEKQRAIK----LIEMAVNSVELYSNGESLEKETNLR 882 (1294)
Q Consensus 813 ~cihLv~f~~LP~~i~d~~e-----~~KElf~I~W~~v~l-~~~~~~~llk----Lfe~Av~s~~~~~~~Esl~~~~~lr 882 (1294)
.-=+--.|-. -..++..+. |.+..-.+|-..++- ....-+.+++ ++..|...+-.+..+++-.+-
T Consensus 302 s~~qk~~i~~-N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~---- 376 (652)
T KOG2376|consen 302 SKKQKQAIYR-NNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK---- 376 (652)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH----
Confidence 3222111000 001111111 333334444443222 2222222222 344455555544444322211
Q ss_pred hhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhC-------cchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCc
Q 000770 883 SAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLY-------PSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPG 954 (1294)
Q Consensus 883 ~aq~lalN~I~c~~ale~~E~a~~Lc~kyvely-------P~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~G 954 (1294)
..++=.+-+...--.++-|..++..+.++- =-.+.+|.+.+.|+ +-.+.+.+..++.+|+.-|-+..+|
T Consensus 377 ---~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 377 ---VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 011112222222334666666666333222 22356688888888 6666788999999999999988876
Q ss_pred ---hHHHHHHHHHHHHhcCChhhHHHHHHH
Q 000770 955 ---IQCIWNQYVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 955 ---iQ~IWnQy~e~aLq~~~~d~A~~il~r 981 (1294)
.-++|-..++|=|..|+...|..++..
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 568899999999999999988888744
No 117
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.15 E-value=9.8 Score=47.46 Aligned_cols=61 Identities=20% Similarity=0.374 Sum_probs=52.8
Q ss_pred hhhhhhcCcCCchHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhcccCC
Q 000770 1216 VSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGD 1278 (1294)
Q Consensus 1216 ~nai~~AiPvapE~vWveAa~~l~~l~~~~~v~~rfyq~AlSvyPfs~~LWk~yl~~~ks~G~ 1278 (1294)
.++++.=-| -|.-.|..=|+...++.+.+.+ ..-|+|+++-.|+|+-||=+|+++++..-+
T Consensus 68 y~~fL~kyP-l~~gyW~kfA~~E~klg~~~~s-~~Vfergv~aip~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 68 YDIFLSKYP-LCYGYWKKFADYEYKLGNAENS-VKVFERGVQAIPLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred HHHHHhhCc-cHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhccCC
Confidence 334444558 7889999999999999998888 899999999999999999999999987655
No 118
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=66.84 E-value=5.6 Score=31.69 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHhcCCCCC
Q 000770 663 LSRALEADPTSEILWITYLLIFYSNTNSV 691 (1294)
Q Consensus 663 LSRALEan~~S~~LW~~YL~Ly~q~~~~e 691 (1294)
+.||||.||+++..|.-|-.+|+..+..+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHH
Confidence 56899999999999999999998877654
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=66.75 E-value=24 Score=43.46 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=79.5
Q ss_pred hhccccHHHHHHH--HHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHH----HHHHHhcCCCCCC-cc---chHH
Q 000770 629 KQVELSNEQCVEM--ALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT----YLLIFYSNTNSVG-KD---DMFS 698 (1294)
Q Consensus 629 le~p~D~elwlkL--Al~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~----YL~Ly~q~~~~ee-~~---eM~e 698 (1294)
...|.|.++|=-+ |..++++- ..+.+.+|+..|.||++.||+....|.. |...+......++ .. +...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~--~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSG--DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456666665332 33444432 2667889999999999999999888875 4333332221111 11 2233
Q ss_pred Hhhhc-----CCccHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHH
Q 000770 699 YSVKH-----NEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKA 773 (1294)
Q Consensus 699 ~AVq~-----~~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kA 773 (1294)
.|+.. .+..|...=.....+..++.+...+++||.-= + | .+ --..+-.++.+.|+.+.|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-------p------s--~~-a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-------M------S--WL-NYVLLGKVYELKGDNRLA 472 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------C------C--HH-HHHHHHHHHHHcCCHHHH
Confidence 33332 12335544233334567777777777766532 1 1 11 122266677899999999
Q ss_pred HHHHHhhccc
Q 000770 774 IQRISRLLIP 783 (1294)
Q Consensus 774 I~~l~~lL~~ 783 (1294)
++.++.++..
T Consensus 473 ~~~~~~A~~L 482 (517)
T PRK10153 473 ADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHhc
Confidence 9987777665
No 120
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=65.35 E-value=5.5 Score=31.73 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHH
Q 000770 941 FEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 976 (1294)
Q Consensus 941 Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~ 976 (1294)
|+.||...|+++. .|+.++....+.|+.+.|+
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhc
Confidence 6889999999996 9999999999999988876
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=64.71 E-value=84 Score=39.02 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 000770 900 GLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 978 (1294)
Q Consensus 900 ~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~i 978 (1294)
.+..|..+++.+++..|.++=+..+...|+ +......+..-|..++..-|.... +|.-|+.-+|+.|++..|-++
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhcCChHHHHHH
Confidence 467799999999999999999999999999 555568899999999999999864 999999999999999999999
Q ss_pred HHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Q 000770 979 MDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALK 1058 (1294)
Q Consensus 979 l~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALk 1058 (1294)
|.+ +... +++ |+.+|-+ |+-..-.+|+..||..|.--++.
T Consensus 397 L~~---------~~~~---------------------~p~---------dp~~w~~-LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 397 LNR---------YLFN---------------------DPE---------DPNGWDL-LAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHH---------Hhhc---------------------CCC---------CchHHHH-HHHHHHHhCchHHHHHHHHHHHH
Confidence 865 1111 121 4444544 77777888888888888766555
Q ss_pred hhh
Q 000770 1059 AAA 1061 (1294)
Q Consensus 1059 aa~ 1061 (1294)
.+.
T Consensus 437 ~~G 439 (484)
T COG4783 437 LAG 439 (484)
T ss_pred hCC
Confidence 554
No 122
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=59.63 E-value=46 Score=34.20 Aligned_cols=78 Identities=12% Similarity=-0.019 Sum_probs=57.9
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhH---HHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE---LVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQY 962 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~e---LvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy 962 (1294)
...|.-..+....+++.|...+++.++..|...+ ....++.++ +.+..+.+...|+.++...|+... .|..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 112 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS----ALNNI 112 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH----HHHHH
Confidence 4467777788889999999999999999887543 455556666 556668899999999999998864 44444
Q ss_pred HHHHHh
Q 000770 963 VEYALQ 968 (1294)
Q Consensus 963 ~e~aLq 968 (1294)
+.....
T Consensus 113 g~~~~~ 118 (172)
T PRK02603 113 AVIYHK 118 (172)
T ss_pred HHHHHH
Confidence 443333
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.88 E-value=27 Score=40.39 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=74.9
Q ss_pred hHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCcc---chHHH
Q 000770 623 GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD---DMFSY 699 (1294)
Q Consensus 623 di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~---eM~e~ 699 (1294)
.+-+-++.=|.|-|+|.++|-.|++... +++|-.-|-.-+=.+|.++-+-.-|-.++|-.++.+-++ .-++.
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~-----f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGD-----FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhH-----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444678889999999999999998753 233444444445579999999999999999888865443 77889
Q ss_pred hhhcCCccHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCC
Q 000770 700 SVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGD 745 (1294)
Q Consensus 700 AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d 745 (1294)
||+.++...+-|.- ++.|.-+|-.+.+.....+++
T Consensus 217 alkl~~~~~ral~G-----------I~lc~~~la~~sk~~~k~~K~ 251 (289)
T KOG3060|consen 217 ALKLNPKNLRALFG-----------IYLCGSALAQISKAELKRKKD 251 (289)
T ss_pred HHHhChHhHHHHHH-----------HHHHHHHHHHHhHHHHhhhhh
Confidence 99998755554432 344566666666655444333
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.72 E-value=77 Score=38.13 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHH
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL 921 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eL 921 (1294)
+-|.+++++|..++++---++ -+-+-+.|.+.+++..|.|++|-+..+|++|..+|-
T Consensus 270 dQP~~AL~~~~~gld~fP~~V---------------T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDV---------------TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchh---------------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence 567888999988887763111 133456788888888888888888888888888775
No 125
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.72 E-value=83 Score=29.97 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=55.1
Q ss_pred HHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcc
Q 000770 965 YALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQN 1044 (1294)
Q Consensus 965 ~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~ 1044 (1294)
.++..+++..|.+-|.+.|.-......+.. ....-+.++|++..+.-.|
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-------------------------------~~~~~~all~lA~~~~~~G 55 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS-------------------------------NSGLAYALLNLAELHRRFG 55 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh-------------------------------hHHHHHHHHHHHHHHHHhC
Confidence 356777899999999998866443332211 2245667999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHH
Q 000770 1045 DWNEARLAIDAALKAAASEHFKHCVR 1070 (1294)
Q Consensus 1045 ~~~EA~~A~ekALkaa~~e~~~hcwr 1070 (1294)
+.+||..+++.|++.|....=+.|..
T Consensus 56 ~~~~A~~~l~eAi~~Are~~D~~~l~ 81 (94)
T PF12862_consen 56 HYEEALQALEEAIRLARENGDRRCLA 81 (94)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 99999999999999999443334433
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=57.30 E-value=10 Score=34.41 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhCcc--hhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHH
Q 000770 900 GLECSMNLLEKYIKLYPS--CLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAA 976 (1294)
Q Consensus 900 ~~E~a~~Lc~kyvelyP~--c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~ 976 (1294)
.++.|+.+++++++..|. .-..++.+|..+ +.+.-..++..|.. +...|+++ .+.+.++.-.++-|+.+.|.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~----~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP----DIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----HHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----HHHHHHHHHHHHhCCHHHHH
Confidence 578899999999999996 455566677777 55544566666654 33333332 35556688888888999999
Q ss_pred HHHHH
Q 000770 977 ELMDR 981 (1294)
Q Consensus 977 ~il~r 981 (1294)
+++.+
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98754
No 127
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.09 E-value=4.9e+02 Score=32.66 Aligned_cols=416 Identities=16% Similarity=0.121 Sum_probs=223.5
Q ss_pred chhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhH
Q 000770 748 HASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAV 827 (1294)
Q Consensus 748 ~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i 827 (1294)
.+++-=.+..-.|.+|.-|.||..+||..+-++-+. +.++|-++.+.-.|=-.||+-|..+
T Consensus 91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t-------------------~r~p~inlMla~l~~~g~r~~~~vl 151 (564)
T KOG1174|consen 91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT-------------------LRSPRINLMLARLQHHGSRHKEAVL 151 (564)
T ss_pred CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc-------------------ccchhHHHHHHHHHhccccccHHHH
Confidence 344444467778999999999999999974333222 1245667777777777788765444
Q ss_pred hhhcccccccccccCCCCCCCcchHHHHHHHHHHHHHhhccccC---CCccccccccchhhhhHhhHHHHHHHhhhHHHH
Q 000770 828 LQLLECEKELFAIDWPPVQLEDDEKQRAIKLIEMAVNSVELYSN---GESLEKETNLRSAHCFAVNHIWCMAVLNGLECS 904 (1294)
Q Consensus 828 ~d~~e~~KElf~I~W~~v~l~~~~~~~llkLfe~Av~s~~~~~~---~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a 904 (1294)
-.. ++-.|. +---+-+..+.+..|+.-++.++ --++++-...+.-+-- =..-|..+=+....+
T Consensus 152 ~yk-evvrec-----------p~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wik--a~Aq~~~~~hs~a~~ 217 (564)
T KOG1174|consen 152 AYK-EVIREC-----------PMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIK--ALAQMFNFKHSDASQ 217 (564)
T ss_pred hhh-HHHHhc-----------chHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHH--HHHHHHhcccchhhh
Confidence 332 221111 11224455566666555442221 1111111111111100 111233333455566
Q ss_pred HHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 000770 905 MNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRWF 983 (1294)
Q Consensus 905 ~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf 983 (1294)
..+.-.....-|.+++|+--+|.+. ..++...+..-|+.+.+..|-.+.|.- -|+-.+=+.|+.+....++-+-|
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD----~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD----LYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH----HHHHHHHhccCHhhHHHHHHHHH
Confidence 7777778889999999999999888 667678999999999999999998653 46666667788888888877665
Q ss_pred hhh------h-hcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q 000770 984 HSV------W-KVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAA 1056 (1294)
Q Consensus 984 ~s~------~-k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekA 1056 (1294)
.-. | +..+--....+.-+. +..+-+++. +.+.+-+-=+|=|=+-+. -+..++|.+||..|
T Consensus 294 ~~~~~ta~~wfV~~~~l~~~K~~~rA------L~~~eK~I~--~~~r~~~alilKG~lL~~-----~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 294 AKVKYTASHWFVHAQLLYDEKKFERA------LNFVEKCID--SEPRNHEALILKGRLLIA-----LERHTQAVIAFRTA 360 (564)
T ss_pred hhhhcchhhhhhhhhhhhhhhhHHHH------HHHHHHHhc--cCcccchHHHhccHHHHh-----ccchHHHHHHHHHH
Confidence 432 1 111111111221111 111111122 111111112233322111 26789999999999
Q ss_pred HHhhh--hhHHHHHHHHHHHHHhcCcCCCCCCCchHHHHHHHhHHHHhhccCcccccchhHhhhcCCchhHHHHHhhccC
Q 000770 1057 LKAAA--SEHFKHCVREHAMLLLINESEPKEGAPISWQLKLLNSYLDRARSLPYLKLLPRQFINNIERPRLQQLIDNLLS 1134 (1294)
Q Consensus 1057 Lkaa~--~e~~~hcwrEya~F~~~~~~~~~~d~~~~~~~~ll~~yL~~~~~lp~~~pLsrrfl~~I~k~rv~~li~~~l~ 1134 (1294)
--.+. .+.|+-..--|++|--+...- .-.++.++.+.- .+|
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~----~~An~~~~~~~~---sA~------------------------------ 403 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEAN----ALANWTIRLFQN---SAR------------------------------ 403 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHH----HHHHHHHHHhhc---chh------------------------------
Confidence 99996 788888888888876333221 111222332211 011
Q ss_pred CCCCchhhHHHHHHhhhC-CCCccccccCcchhHHHHHHHHhhcCchhHHHHHHHHHhhhccCCCCCCCchhhHHHHHHh
Q 000770 1135 PVSSDFSLVNLVLEVCYG-PSLLPRNFSKLKDLVDFVEGIMEIVPSNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASS 1213 (1294)
Q Consensus 1135 P~ssd~sl~N~Vle~~yg-~SllPq~~~~~K~lvdfvE~imE~~P~Ny~LALav~kll~k~~~~~~~d~~s~~~~fWA~s 1213 (1294)
.|.. +| .-|+|.-.. .+---.|.|.-+-+=|.=.+-.+.+.-|+..+=. +.|+.+
T Consensus 404 -----------~LtL-~g~~V~~~dp~~-rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~--~~D~i~--------- 459 (564)
T KOG1174|consen 404 -----------SLTL-FGTLVLFPDPRM-REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP--TKDIIK--------- 459 (564)
T ss_pred -----------hhhh-hcceeeccCchh-HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc--cchHHH---------
Confidence 1111 12 222333221 2222356666666666666655555555544332 333332
Q ss_pred hhhhhhhhcCcCCchHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhcccCC
Q 000770 1214 SLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSVYPFSIKLWKCYYDLSKTKGD 1278 (1294)
Q Consensus 1214 ~L~nai~~AiPvapE~vWveAa~~l~~l~~~~~v~~rfyq~AlSvyPfs~~LWk~yl~~~ks~G~ 1278 (1294)
+|=+++- -.+--.+-+.-|+++..-..-.+- -..|+.||+.=|=+-+--+--=.++|..-+
T Consensus 460 LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~a-m~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 460 LLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKA-MEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred HHHHHHh---hccccHHHHHHHHHHHHhhhHHHH-HHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 2323221 113344555556665444433333 367888999889887766666666666543
No 128
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=56.48 E-value=18 Score=44.39 Aligned_cols=71 Identities=35% Similarity=0.519 Sum_probs=0.0
Q ss_pred hhhhhhhhcCcCCchHHHHHHHHHHhhh---------hhHHHHHHHHHHhhhccccch--hhhhhhhhhhh---------
Q 000770 1214 SLVSAIFHAVPVAPEYVWVEAAGILGNI---------SSIEEISERFFKRALSVYPFS--IKLWKCYYDLS--------- 1273 (1294)
Q Consensus 1214 ~L~nai~~AiPvapE~vWveAa~~l~~l---------~~~~~v~~rfyq~AlSvyPfs--~~LWk~yl~~~--------- 1273 (1294)
++-+||| -+--+.+|-|-+.+|+.+ +.+.-| ++||+|||++ ||- -||||+|=+|+
T Consensus 141 v~~~~~~---e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i-R~~Y~ral~t-P~~nleklW~dy~~fE~e~N~~Tar 215 (660)
T COG5107 141 VLGCAIF---EPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI-RNGYMRALQT-PMGNLEKLWKDYENFELELNKITAR 215 (660)
T ss_pred HHhcccc---cccccchHHHHHHHHHhccccccHHHHHHHHHH-HHHHHHHHcC-ccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccCCHHHHHHHHHHh
Q 000770 1274 KTKGDLNTIVKAAREK 1289 (1294)
Q Consensus 1274 ks~G~~~~iveaare~ 1289 (1294)
|--|++.-|--+||++
T Consensus 216 Kfvge~sp~ym~ar~~ 231 (660)
T COG5107 216 KFVGETSPIYMSARQR 231 (660)
T ss_pred HHhcccCHHHHHHHHH
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=56.17 E-value=63 Score=32.94 Aligned_cols=94 Identities=11% Similarity=0.019 Sum_probs=65.4
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhH---HHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCch---HHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLE---LVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGI---QCIW 959 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~e---LvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~Gi---Q~IW 959 (1294)
...+...+......++.|...+++.+++.|...+ ...-.+.++ +.+..+.+...|+.++...|....+. -.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 5567778888889999999999999999876443 444445555 55555789999999999999887531 1233
Q ss_pred HHHHHHHHhcCChhhHHHHHH
Q 000770 960 NQYVEYALQNGRHDFAAELMD 980 (1294)
Q Consensus 960 nQy~e~aLq~~~~d~A~~il~ 980 (1294)
+..++-++..|..+.|+..+.
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 333444446667776665543
No 130
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=55.75 E-value=19 Score=35.64 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCC
Q 000770 655 GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSV 691 (1294)
Q Consensus 655 ~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~e 691 (1294)
..++|+..+.++++.||.++.+|...+.+|.+.+...
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~ 113 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA 113 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH
Confidence 4689999999999999999999999999998877664
No 131
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=53.85 E-value=23 Score=27.00 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC
Q 000770 636 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS 673 (1294)
Q Consensus 636 elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S 673 (1294)
++|..+|..++.+. .+++|+..+.|||+.||++
T Consensus 2 ~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG-----DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhC-----CchHHHHHHHHHHHHCcCC
Confidence 57778888777765 3689999999999999973
No 132
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.68 E-value=33 Score=41.26 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=59.3
Q ss_pred Hhhhhhcc-ccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHH------HHHHHHhcCCC--------
Q 000770 625 LNKLKQVE-LSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWI------TYLLIFYSNTN-------- 689 (1294)
Q Consensus 625 ~n~vle~p-~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~------~YL~Ly~q~~~-------- 689 (1294)
++.+.+.. .++++||...+.+|- .+++||++..-+-+.+--..+||+ +||.+|-+...
T Consensus 48 k~~~~~EEE~~~~lWia~C~fhLg-------dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 48 KLNLDREEEDSLQLWIAHCYFHLG-------DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT 120 (557)
T ss_pred hhccchhhhHHHHHHHHHHHHhhc-------cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 34454444 489999999988874 578899999988887777888886 79999965432
Q ss_pred CCCccchHHHhhhcCCccHHHHHHHHh
Q 000770 690 SVGKDDMFSYSVKHNEGSYALWLMYIN 716 (1294)
Q Consensus 690 ~ee~~eM~e~AVq~~~~SY~LWL~YLn 716 (1294)
+.-..=||--|.+++ +=.-|+.+=.
T Consensus 121 pL~~RLlfhlahkln--dEk~~~~fh~ 145 (557)
T KOG3785|consen 121 PLCIRLLFHLAHKLN--DEKRILTFHS 145 (557)
T ss_pred hHHHHHHHHHHHHhC--cHHHHHHHHH
Confidence 333346777788884 5566776643
No 133
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.36 E-value=90 Score=39.13 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=95.4
Q ss_pred HhhhHHHHHHHHHHHHHhCcchh----HHHHHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCCh
Q 000770 897 VLNGLECSMNLLEKYIKLYPSCL----ELVLMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRH 972 (1294)
Q Consensus 897 ale~~E~a~~Lc~kyvelyP~c~----eLvL~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~ 972 (1294)
+|+.+|.|+.=.++.+.+.|..+ +|-+++=|.++-+ .+-.+|+++..+.|.-++ +++-+++-+.+++.+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~---~~m~~Fee~kkkFP~~~E----vy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA---ESMKTFEEAKKKFPNCPE----VYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCch----HHHHHHHHHhhHHhH
Confidence 58999999999999999999874 4444444444444 778899999999999997 999999999999999
Q ss_pred hhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCC--CCcc---hh--HHHHHHHHHHHHhhccc
Q 000770 973 DFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVS--NRNQ---MD--VMFGYLNLSLHRLLQND 1045 (1294)
Q Consensus 973 d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~--~s~q---~D--~mf~lLNlsL~~~Lq~~ 1045 (1294)
|-|.+-...=++.-.+.....+++.-.+. .+++-.-.+ .|+... -.++ .| -=+.+.-+.=.++=+++
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~----Ka~l~~qwk--~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVH----KALLVLQWK--EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhh----hhHhhhchh--hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 98887753322221111111111111110 111111110 111000 0000 01 11334445556677899
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 000770 1046 WNEARLAIDAALKAAASE 1063 (1294)
Q Consensus 1046 ~~EA~~A~ekALkaa~~e 1063 (1294)
+.||..-||||.-.|..+
T Consensus 553 i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 999999999999999844
No 134
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=47.27 E-value=31 Score=31.33 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ 929 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq 929 (1294)
.+.+.++++|+.++..-.- .+ . . ....++..|+--...++.|..++++ .+..|..++...+.|+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~----~~-~-~-------~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT----NP-N-S-------AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG----TH-H-H-------HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCC----Ch-h-H-------HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 4567899999998887641 00 0 1 2555789999999999999999999 889999988877778866
Q ss_pred -ccccCCccHHHHHH
Q 000770 930 -KHDFGDLSSVGFEE 943 (1294)
Q Consensus 930 -k~d~~~~~~~~Fee 943 (1294)
+...-+.+...|++
T Consensus 69 ~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 69 LKLGKYEEAIKALEK 83 (84)
T ss_dssp HHTT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 44444455555543
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=47.21 E-value=6.6e+02 Score=33.97 Aligned_cols=253 Identities=11% Similarity=0.012 Sum_probs=158.0
Q ss_pred ccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHH
Q 000770 631 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL 710 (1294)
Q Consensus 631 ~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~L 710 (1294)
.|.+.++|..|+..+..++. +++|+.++..+|+.+|++..+|..--.||++++.- ..|.+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~-----~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~---------------~~~~l 86 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENL-----TDEAKDICEEHLKEHKKSISALYISGILSLSRRPL---------------NDSNL 86 (906)
T ss_pred CcchHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcch---------------hhhhh
Confidence 57888889988887765543 57888889999999999999998887888777661 33344
Q ss_pred HHHHHhh---ccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCC
Q 000770 711 WLMYINS---RTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 787 (1294)
Q Consensus 711 WL~YLns---r~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~s 787 (1294)
+ .-+.. +..+..-.+.|..++.+.-+ . ...+-+..|+=..|+.++|++....+|+.. .
T Consensus 87 v-~~l~~~~~~~~~~~ve~~~~~i~~~~~~---------k-------~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~ 147 (906)
T PRK14720 87 L-NLIDSFSQNLKWAIVEHICDKILLYGEN---------K-------LALRTLAEAYAKLNENKKLKGVWERLVKAD--R 147 (906)
T ss_pred h-hhhhhcccccchhHHHHHHHHHHhhhhh---------h-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--c
Confidence 3 22222 22333344455554443211 0 134557777778999999999999999885 2
Q ss_pred CCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcc-----c-cccc--ccccCC-CCCCCcchHHHHHHH
Q 000770 788 NDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLE-----C-EKEL--FAIDWP-PVQLEDDEKQRAIKL 858 (1294)
Q Consensus 788 d~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e-----~-~KEl--f~I~W~-~v~l~~~~~~~llkL 858 (1294)
+++. ++.. ++|.|... .|+.+..=..- . .|+. +.--|. -++...++.+-++++
T Consensus 148 ~n~~------aLNn----------~AY~~ae~--dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i 209 (906)
T PRK14720 148 DNPE------IVKK----------LATSYEEE--DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRI 209 (906)
T ss_pred ccHH------HHHH----------HHHHHHHh--hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHH
Confidence 2331 3333 45666665 56654322111 1 2233 334488 677777888888887
Q ss_pred HHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCcc
Q 000770 859 IEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLS 937 (1294)
Q Consensus 859 fe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~ 937 (1294)
.+.-..++. . + +.. -+..=.--|+...+.+..+..++..+++.-|.+--.+-=+|+-+ +++.+.+-
T Consensus 210 ~~ki~~~~~-----~----~---~~~-~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~ 276 (906)
T PRK14720 210 ERKVLGHRE-----F----T---RLV-GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSL 276 (906)
T ss_pred HHHHHhhhc-----c----c---hhH-HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcch
Confidence 776666653 1 1 111 23334456777888999999999999999999888775555555 55544343
Q ss_pred HHHHHHH--HhcCCCCCC
Q 000770 938 SVGFEEA--LIKWPKGVP 953 (1294)
Q Consensus 938 ~~~Feea--l~~wPKea~ 953 (1294)
|.-|... |.+.++++.
T Consensus 277 ~ee~l~~s~l~~~~~~~~ 294 (906)
T PRK14720 277 LEDYLKMSDIGNNRKPVK 294 (906)
T ss_pred HHHHHHHhccccCCccHH
Confidence 3333322 234456654
No 136
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=67 Score=38.99 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHhhccccCCCcccccc---ccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHH
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKET---NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKA 926 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~---~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sA 926 (1294)
..-..+.+.++.|++.+... -+.+.++ ....=...++|+-.|+.=|+++-+|+..|.+-+++-|.++-=+-=-.
T Consensus 222 gk~~~A~~~Yerav~~l~~~---~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG 298 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYR---RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRG 298 (397)
T ss_pred chHHHHHHHHHHHHHHhhcc---ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 36678899999999998722 1222222 22222557789999999999999999999999999999998765544
Q ss_pred Hhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCC-hhhHHHHHHHHhhhhhh
Q 000770 927 RLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGR-HDFAAELMDRWFHSVWK 988 (1294)
Q Consensus 927 rLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~-~d~A~~il~rwf~s~~k 988 (1294)
+.+ .....+.+..-|..|+..-|.|. .|=+|++...-.-.. -+..+++..+-|.-..+
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~P~Nk----a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLEPSNK----AARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444 23334677888999999999996 466776664322211 13556776666655543
No 137
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=44.92 E-value=39 Score=25.71 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhh
Q 000770 1032 GYLNLSLHRLLQNDWNEARLAIDAALKAA 1060 (1294)
Q Consensus 1032 ~lLNlsL~~~Lq~~~~EA~~A~ekALkaa 1060 (1294)
.|.++.......++..+|..++++||+.-
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57888999999999999999999999853
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=44.16 E-value=2.4e+02 Score=37.75 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=89.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccC-CccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHh
Q 000770 891 HIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFG-DLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQ 968 (1294)
Q Consensus 891 ~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~-~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq 968 (1294)
+|......+.++.|.++|+..++..|..+.++++++-|+ +.+.. +.++.+=...+...+|- ..|.++..+..+|.=+
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGEN 115 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhh
Confidence 344455778999999999999999999999999988887 33333 44444333444444333 4455555444444444
Q ss_pred c-------------CChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHH
Q 000770 969 N-------------GRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLN 1035 (1294)
Q Consensus 969 ~-------------~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLN 1035 (1294)
+ |+.+.|.+++.+ .++.. + +.-.....+-
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer--------------------------~L~~D----~--------~n~~aLNn~A 157 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWER--------------------------LVKAD----R--------DNPEIVKKLA 157 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHH--------------------------HHhcC----c--------ccHHHHHHHH
Confidence 4 555666666533 11111 1 1123344444
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q 000770 1036 LSLHRLLQNDWNEARLAIDAALKAAA----SEHFKHCVREHAM 1074 (1294)
Q Consensus 1036 lsL~~~Lq~~~~EA~~A~ekALkaa~----~e~~~hcwrEya~ 1074 (1294)
|.+ ..+ ++.+|..=+.||+..-. ...+.+.|.++.-
T Consensus 158 Y~~--ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 158 TSY--EEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHH--HHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh
Confidence 555 444 99999999999998876 3348889998863
No 139
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=43.55 E-value=44 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=26.0
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhCcch
Q 000770 889 VNHIWCMAVLNGLECSMNLLEKYIKLYPSC 918 (1294)
Q Consensus 889 lN~I~c~~ale~~E~a~~Lc~kyvelyP~c 918 (1294)
.++-+|+......+.|+++++++++.||.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356678888899999999999999999963
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=42.15 E-value=5.1e+02 Score=32.61 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHhhhccCCCCCCCchhhHHHHHHhhhhhhhhhcCcCCchHHHHHHHHHHhhhhhHHHHHHHHHHhhhcc
Q 000770 1179 SNYQLAFSVFKLLNKDHNPNITDAVPESVLFWASSSLVSAIFHAVPVAPEYVWVEAAGILGNISSIEEISERFFKRALSV 1258 (1294)
Q Consensus 1179 ~Ny~LALav~kll~k~~~~~~~d~~s~~~~fWA~s~L~nai~~AiPvapE~vWveAa~~l~~l~~~~~v~~rfyq~AlSv 1258 (1294)
.+|++||.-+..+.|+|.....| +.-|-.-. +...-+ ..||+--.+.++|.+ +.||-+|.
T Consensus 319 ~~~~~ALk~~~~v~k~f~~~~~D----QfDFH~Yc-----~RK~t~----r~Y~~~L~~ed~l~~-----~~~y~raa-- 378 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHFDDFEED----QFDFHSYC-----LRKMTL----RAYVDMLRWEDKLRS-----HPFYRRAA-- 378 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc----cccHHHHH-----HhhccH----HHHHHHHHHHHHhhc-----CHHHHHHH--
Confidence 78999999988888988843334 33343321 222222 568898999999998 88998886
Q ss_pred ccchhhhhhhhhhhh
Q 000770 1259 YPFSIKLWKCYYDLS 1273 (1294)
Q Consensus 1259 yPfs~~LWk~yl~~~ 1273 (1294)
.-.++.|+.+-
T Consensus 379 ----~~ai~iYl~l~ 389 (517)
T PF12569_consen 379 ----KGAIRIYLELH 389 (517)
T ss_pred ----HHHHHHHHHHh
Confidence 44566666654
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=40.45 E-value=1.3e+02 Score=33.65 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhCcchhHHH---HHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000770 899 NGLECSMNLLEKYIKLYPSCLELV---LMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE 964 (1294)
Q Consensus 899 e~~E~a~~Lc~kyvelyP~c~eLv---L~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e 964 (1294)
..++.|++++++++..||...... +.++..+ +......+...|++.+..+|.. |-+...+|+.+-
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-~~~~~a~Y~~g~ 114 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-PNIDYVLYMRGL 114 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-CchHHHHHHHHH
Confidence 457789999999999999986664 6667766 6666689999999999999988 467788887664
No 142
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.38 E-value=33 Score=42.42 Aligned_cols=113 Identities=21% Similarity=0.314 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHH----HHhhccCccchHHHHH
Q 000770 654 EGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLM----YINSRTPLNHRLDAYD 729 (1294)
Q Consensus 654 e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~----YLnsr~~fddr~~ay~ 729 (1294)
++ ++|.-.+.|||..||.....|++-=|=|=.=....-..+-+-+||+-+|.+|+-|-- |--..-+| =.++-|.
T Consensus 345 eH-EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~-YaLyYfq 422 (559)
T KOG1155|consen 345 EH-EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF-YALYYFQ 422 (559)
T ss_pred hH-HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH-HHHHHHH
Confidence 55 899999999999999999999998888866666666668889999999999999952 22221111 1444466
Q ss_pred HHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccc
Q 000770 730 AALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP 783 (1294)
Q Consensus 730 raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~ 783 (1294)
+|++.. |.|. + +..-|-+|.-..++.+.||--..++...
T Consensus 423 kA~~~k-------PnDs------R--lw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 423 KALELK-------PNDS------R--LWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHhcC-------CCch------H--HHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 655432 3331 2 2333556666778888888744444433
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=37.51 E-value=71 Score=39.63 Aligned_cols=93 Identities=10% Similarity=0.111 Sum_probs=67.0
Q ss_pred ccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHH-
Q 000770 631 VELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYA- 709 (1294)
Q Consensus 631 ~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~- 709 (1294)
.|.+-..+..+|+..+.+ ...++|...|.||++.|| +..-|..+-++|-..|..++..+.+++|++.+ |++.
T Consensus 416 ~~~~~~~~~ala~~~~~~-----g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~-P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVK-----GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR-PGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCch
Confidence 566667777777776654 245789999999999999 56667777778888888888999999999996 4544
Q ss_pred -HHHHHHhhccCccchHHHHHH
Q 000770 710 -LWLMYINSRTPLNHRLDAYDA 730 (1294)
Q Consensus 710 -LWL~YLnsr~~fddr~~ay~r 730 (1294)
.||.=+-+.+.+..=.++..+
T Consensus 489 ~~~~~~~~f~~~~~~~~~~~~~ 510 (517)
T PRK10153 489 LYWIENLVFQTSVETVVPYLYR 510 (517)
T ss_pred HHHHHhccccccHHHHHHHHHh
Confidence 344444445655554444333
No 144
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=37.12 E-value=5.1e+02 Score=32.70 Aligned_cols=139 Identities=20% Similarity=0.140 Sum_probs=96.7
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCc--------chhHHHHHHHHhh-ccccCCccHHHHHHHHhcC----CCCCC
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYP--------SCLELVLMKARLQ-KHDFGDLSSVGFEEALIKW----PKGVP 953 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP--------~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~w----PKea~ 953 (1294)
...|.+.....-+++|.|..|+++.++.|- +-..+.--+++++ +.+...-+-..|++|+.+- =|..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 445788888889999999999999998874 2233456667777 5555588899999999988 78888
Q ss_pred chHHHHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHH
Q 000770 954 GIQCIWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGY 1033 (1294)
Q Consensus 954 GiQ~IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~l 1033 (1294)
|++..-+|.+.=-.+-.+.+.|.++..+-+.=. | +.++ .+.|.+|-+
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~-------------------~~g~-------------~~~~~~~~~ 453 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-K-------------------LCGP-------------DHPDVTYTY 453 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-H-------------------HhCC-------------CCCchHHHH
Confidence 988877777774488888888888865421111 0 1111 112778899
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHH
Q 000770 1034 LNLSLHRLLQNDWNEARLAIDAALK 1058 (1294)
Q Consensus 1034 LNlsL~~~Lq~~~~EA~~A~ekALk 1058 (1294)
.||+=-=-=+|+.++|...-+++++
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9998433345677777766666654
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=34.40 E-value=61 Score=40.85 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=61.1
Q ss_pred HhhhhhccccHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhc
Q 000770 625 LNKLKQVELSNEQCVEMALLILNQDANK-LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKH 703 (1294)
Q Consensus 625 ~n~vle~p~D~elwlkLAl~~Lnq~~n~-~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~ 703 (1294)
..+|.++|.|++.|--|-.-+=+|+..+ -+-+++-++ .=|.++-.|..|+.==.....=+.+.-+|..-+.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~-------~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVN-------VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhc-------cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5689999999999998877777775544 344444444 46999999999997555555544455566666554
Q ss_pred CCccHHHHHHHHhh
Q 000770 704 NEGSYALWLMYINS 717 (1294)
Q Consensus 704 ~~~SY~LWL~YLns 717 (1294)
.-+-.||-.||.-
T Consensus 83 -vLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 83 -VLNLDLWKLYLSY 95 (656)
T ss_pred -HhhHhHHHHHHHH
Confidence 3558899999986
No 146
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=33.72 E-value=2e+02 Score=37.99 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCcc-chHHHhhhcCCc
Q 000770 628 LKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKD-DMFSYSVKHNEG 706 (1294)
Q Consensus 628 vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~-eM~e~AVq~~~~ 706 (1294)
+-+.+.|.++||....-.=-+=--. +.++++-+||+-+.|-+-.||--||.=+.+.....++. ..++.++-..-.
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~----~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~ 414 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVP----QRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE 414 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccc----cccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHhhccCccchHHH------HHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHh-----hcccHHHHHH
Q 000770 707 SYALWLMYINSRTPLNHRLDA------YDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC-----MSGNTEKAIQ 775 (1294)
Q Consensus 707 SY~LWL~YLnsr~~fddr~~a------y~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc-----~SGn~~kAI~ 775 (1294)
=|..-+.|..-.+...+-.++ ++.|...|...-+. -+|...-.++.-. ..+|+++|..
T Consensus 415 l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~-----------~~Dt~~~~~q~wA~~E~sl~~nmd~~R~ 483 (881)
T KOG0128|consen 415 LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGD-----------QLDTRTEVLQLWAQVEASLLKNMDKARE 483 (881)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHhhchhhhhH
Q ss_pred HHHhhccccCCCCCCccccHHHHHhhcCcCCcchH--HHHHH-HHHHhccCchh
Q 000770 776 RISRLLIPATGSNDRHSLFLSDILTCLTISDKLIF--WVCCV-YLVIYRKLPDA 826 (1294)
Q Consensus 776 ~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~--WL~ci-hLv~f~~LP~~ 826 (1294)
+ |.++ ||.+..-|. ||.+| --..|+..|..
T Consensus 484 i---------------Wn~i------mty~~~~iag~Wle~~~lE~~~g~~~~~ 516 (881)
T KOG0128|consen 484 I---------------WNFI------MTYGGGSIAGKWLEAINLEREYGDGPSA 516 (881)
T ss_pred h---------------hhcc------ccCCcchHHHHHHHHHhHHHHhCCchhH
No 147
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=33.67 E-value=75 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHh
Q 000770 1032 GYLNLSLHRLLQNDWNEARLAIDAALKA 1059 (1294)
Q Consensus 1032 ~lLNlsL~~~Lq~~~~EA~~A~ekALka 1059 (1294)
.|..++..-+-.++..+|...+++|++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4666777788999999999999999975
No 148
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=32.45 E-value=2.6e+02 Score=28.93 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChH----------------HHHHHHHHHhcCCC----CCCccchHHHhhhcCC-ccHHHH
Q 000770 653 LEGMKKALSLLSRALEADPTSEI----------------LWITYLLIFYSNTN----SVGKDDMFSYSVKHNE-GSYALW 711 (1294)
Q Consensus 653 ~e~l~~AL~vLSRALEan~~S~~----------------LW~~YL~Ly~q~~~----~ee~~eM~e~AVq~~~-~SY~LW 711 (1294)
.+++.+||+.|..|.+-++.+.. -|=.=-.....+|. ..+-.+.+-.|.+..= .+=+.|
T Consensus 2 ~~nf~kAl~~L~~a~~~~~~~~~~~~~g~IqrFE~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W 81 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDLTNDITIIDGAIQKFEFTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLW 81 (123)
T ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHH
Confidence 36788899999999988777765 45322221122222 3344688888876643 466799
Q ss_pred HHHHhhccCcc------chHHHHHHHHHH
Q 000770 712 LMYINSRTPLN------HRLDAYDAALSV 734 (1294)
Q Consensus 712 L~YLnsr~~fd------dr~~ay~raL~~ 734 (1294)
+.++..|.... .+..+|+++..+
T Consensus 82 ~~ml~~RN~tsHtYde~~a~~i~~~I~~y 110 (123)
T TIGR01987 82 IAMLDDRNITSHTYDQEKAREIYAQIRDY 110 (123)
T ss_pred HHHHHHhCcccccCCHHHHHHHHHHHHHH
Confidence 99999984332 256666665543
No 149
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=31.89 E-value=1.5e+02 Score=34.17 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=65.6
Q ss_pred hhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhhccc---cCCccHHHHHHHHhcCCCCCCchHHHHHHH
Q 000770 886 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQKHD---FGDLSSVGFEEALIKWPKGVPGIQCIWNQY 962 (1294)
Q Consensus 886 ~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLqk~d---~~~~~~~~Feeal~~wPKea~GiQ~IWnQy 962 (1294)
++++ .|-++...+|++-|...++++-+.....+=.-+..|-+.-.. ....++..|+|...+.|... .+.|-.
T Consensus 133 ~~al-~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~----~~lng~ 207 (290)
T PF04733_consen 133 LLAL-AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP----KLLNGL 207 (290)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH----HHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH----HHHHHH
Confidence 3444 455667799999999999999888888765556666666222 23789999999888877765 478877
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 000770 963 VEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 963 ~e~aLq~~~~d~A~~il~r 981 (1294)
+.-.|+.|+.+.|.+++..
T Consensus 208 A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 7766777799999999854
No 150
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=31.80 E-value=2.8e+02 Score=31.29 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccc---cccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHH
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKE---TNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKA 926 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~---~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sA 926 (1294)
++...+++.++.|.+.|+.....+...++ -++++-+.++..++-.- ..++.+.|.++++-+.+.||.=+++.++..
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~-~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l 128 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWD-TYESVEKALNALRLLESEYGNKPEVFLLKL 128 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 68899999999999998642111112222 14555566666655433 347888899999999999999999986665
Q ss_pred Hhhcc-ccCCccHHHHHHHHhcCC
Q 000770 927 RLQKH-DFGDLSSVGFEEALIKWP 949 (1294)
Q Consensus 927 rLqk~-d~~~~~~~~Feeal~~wP 949 (1294)
++-.+ .+.+..-....+++..-+
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcc
Confidence 55544 333444444445554443
No 151
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.09 E-value=98 Score=34.28 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=49.2
Q ss_pred chhh-hhhhHHhhhhhccccHHHHHHHH--HHHhhhcc---chHHHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHhc
Q 000770 616 SFFR-SRNGVLNKLKQVELSNEQCVEMA--LLILNQDA---NKLEGMKKALSLLSRALEADPTS-EILWITYLLIFYS 686 (1294)
Q Consensus 616 s~f~-~~~di~n~vle~p~D~elwlkLA--l~~Lnq~~---n~~e~l~~AL~vLSRALEan~~S-~~LW~~YL~Ly~q 686 (1294)
.+|. .|..-+..+..+|.|.|.+..-+ |..|.|-. .+.+-++.|..-|..||..||+- ..+|+.=--++++
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3555 66777778999999999998754 44444422 23468999999999999999994 8999865444443
No 152
>PF12854 PPR_1: PPR repeat
Probab=30.35 E-value=51 Score=26.25 Aligned_cols=20 Identities=15% Similarity=0.601 Sum_probs=17.4
Q ss_pred HHHHHHhhcccHHHHHHHHH
Q 000770 759 QMLQCFCMSGNTEKAIQRIS 778 (1294)
Q Consensus 759 Qml~~Lc~SGn~~kAI~~l~ 778 (1294)
-|+..+|..|+++.|++.+.
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 37899999999999999754
No 153
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.34 E-value=3.4e+02 Score=34.49 Aligned_cols=84 Identities=15% Similarity=0.054 Sum_probs=63.1
Q ss_pred HhhHHH-HHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHH-
Q 000770 888 AVNHIW-CMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVE- 964 (1294)
Q Consensus 888 alN~I~-c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e- 964 (1294)
+++|.- |.-+....-.|...+++..++.|..+.|+...+.++ ..++...++..|.+|..-.|.+.+ +|||=+-
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d----vYyHRgQm 403 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD----VYYHRGQM 403 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc----hhHhHHHH
Confidence 344443 333445566788999999999999999876666555 444578899999999999999998 9998766
Q ss_pred -HHHhcCChhhHHH
Q 000770 965 -YALQNGRHDFAAE 977 (1294)
Q Consensus 965 -~aLq~~~~d~A~~ 977 (1294)
|+|++ ++.|..
T Consensus 404 ~flL~q--~e~A~a 415 (606)
T KOG0547|consen 404 RFLLQQ--YEEAIA 415 (606)
T ss_pred HHHHHH--HHHHHH
Confidence 77776 555443
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=29.92 E-value=3e+02 Score=31.29 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=70.7
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHhCcch--hHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKLYPSC--LELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYV 963 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c--~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~ 963 (1294)
+-+-.-+-+-+++++..|..+++++++-+|.- ++=-|+.+|.. ..+.....=+.||-+++-.|-- |..= -|+
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~----~ar~-~Y~ 200 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP----QARI-YYA 200 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH----HHHH-HHH
Confidence 44566677889999999999999999999863 44456677766 4444466888999999987643 3322 478
Q ss_pred HHHHhcCChhhHHHHHHHHhhhh
Q 000770 964 EYALQNGRHDFAAELMDRWFHSV 986 (1294)
Q Consensus 964 e~aLq~~~~d~A~~il~rwf~s~ 986 (1294)
++++.+|+-+.|+.=.+.-|.-.
T Consensus 201 e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 201 EMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHhcchhHHHHHHHHHHHHH
Confidence 99999998998887776655443
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=29.69 E-value=93 Score=31.64 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=51.8
Q ss_pred hccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHhcCCCCCCccchHHHhh
Q 000770 630 QVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNSVGKDDMFSYSV 701 (1294)
Q Consensus 630 e~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~---S~~LW~~YL~Ly~q~~~~ee~~eM~e~AV 701 (1294)
..+.-.+++|.+|-.+-+.- .+++|+.+|..+++..|. +..++++|-...+..+...|.-+++..++
T Consensus 33 ~~~~~~~a~i~lastlr~LG-----~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 33 SGADRRRALIQLASTLRNLG-----RYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred CchHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445678888888777543 358899999999999888 99999999888888777766666666554
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=29.65 E-value=1.9e+02 Score=32.29 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHH--HHH-H
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELV--LMK-A 926 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLv--L~s-A 926 (1294)
.+-+.++++|+.....-- . + +.+..-.+++..++.....++.|+...+++++.||...+.= ++. +
T Consensus 46 g~y~~Ai~~f~~l~~~yP---~------s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 46 GNWKQAITQLEALDNRYP---F------G---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred CCHHHHHHHHHHHHHhCC---C------C---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 455566667766655321 1 1 23333457889999999999999999999999999998772 211 1
Q ss_pred Hhh-cc----------------cc--CCccHHHHHHHHhcCCCCC
Q 000770 927 RLQ-KH----------------DF--GDLSSVGFEEALIKWPKGV 952 (1294)
Q Consensus 927 rLq-k~----------------d~--~~~~~~~Feeal~~wPKea 952 (1294)
-.+ .. |. ...++..|+..+.+.|+-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 111 01 00 1356788999999999753
No 157
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.79 E-value=46 Score=32.05 Aligned_cols=18 Identities=50% Similarity=0.575 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000770 78 KALKAYRKAQRALIEANA 95 (1294)
Q Consensus 78 ~AlkaYrkAQraLieAna 95 (1294)
+|+.+||||+|-|.|+.+
T Consensus 26 ~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 26 QALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 599999999999999875
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.85 E-value=2.8e+02 Score=31.69 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=50.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcch---hHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCC
Q 000770 891 HIWCMAVLNGLECSMNLLEKYIKLYPSC---LELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGV 952 (1294)
Q Consensus 891 ~I~c~~ale~~E~a~~Lc~kyvelyP~c---~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea 952 (1294)
+-.++.....++.|+..++++++.||.. .+.++-.+.++ .++..+.+...|+.++.+.|+..
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3455567889999999999999999984 66666667777 66667899999999999999865
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=26.48 E-value=3.7e+02 Score=34.47 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=75.0
Q ss_pred hhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh--ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000770 886 CFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ--KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYV 963 (1294)
Q Consensus 886 ~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq--k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~ 963 (1294)
+..+||+++..--+|+++|+-+..+.-|.-=.--+..+.+|-|. -..+...++..|+--|.+.+..- ..=+-|+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p----~yv~~Yl 442 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSP----EYVLKYL 442 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCh----HHHHHHH
Confidence 45679999999999999999999999998777778889999887 44446899999999999998765 3557888
Q ss_pred HHHHhcCChhhHHHHHHH
Q 000770 964 EYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 964 e~aLq~~~~d~A~~il~r 981 (1294)
.|+++=+.-.-|+.++-|
T Consensus 443 dfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHhCcchhHHHHHHH
Confidence 898887655567766544
No 160
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=26.28 E-value=5.4e+02 Score=32.48 Aligned_cols=120 Identities=12% Similarity=0.169 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhh-cCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcC----Cc-----cHHHHHHHHhh--ccCccc
Q 000770 656 MKKALSLLSRALE-ADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN----EG-----SYALWLMYINS--RTPLNH 723 (1294)
Q Consensus 656 l~~AL~vLSRALE-an~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~----~~-----SY~LWL~YLns--r~~fdd 723 (1294)
+.+||..+.++++ .|+.-+.+-..+-.+|++.+...|..+|+..||+-+ .. -+.||=+-..- .-.-..
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 3345555555554 667788999999999999999999999999999875 11 24466543332 133344
Q ss_pred hHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccc
Q 000770 724 RLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIP 783 (1294)
Q Consensus 724 r~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~ 783 (1294)
....|.++..-+-...... .+ ++....-|.-++-.-||.+.|++....++.+
T Consensus 428 a~~l~~~~~~i~~~~g~~~-~~-------~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDH-PD-------VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHHHhCCCC-Cc-------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5566777777662211111 12 6667777788888999999999998888855
No 161
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.52 E-value=2.5e+02 Score=27.15 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=42.7
Q ss_pred hhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHH
Q 000770 621 RNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS--EILWITYLLIF 684 (1294)
Q Consensus 621 ~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S--~~LW~~YL~Ly 684 (1294)
...+++.|.++|.|.++.+.+|..++.... ++.||..|-..+..+++. ..-=-.+|.||
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-----~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGD-----YEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 346778999999999999999998887643 577888888888887764 44444555555
No 162
>PRK04841 transcriptional regulator MalT; Provisional
Probab=25.24 E-value=8.6e+02 Score=31.34 Aligned_cols=139 Identities=13% Similarity=0.010 Sum_probs=87.1
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHhCcc---------hhHHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchH-H
Q 000770 889 VNHIWCMAVLNGLECSMNLLEKYIKLYPS---------CLELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQ-C 957 (1294)
Q Consensus 889 lN~I~c~~ale~~E~a~~Lc~kyvelyP~---------c~eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ-~ 957 (1294)
+....+.....+++.|..++....+..+. -.++..+.+.++ ..+..+.+...+++++...|...+-.+ .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 44555666677888888888887766443 123334445555 333446777888888887665443111 2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHH
Q 000770 958 IWNQYVEYALQNGRHDFAAELMDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLS 1037 (1294)
Q Consensus 958 IWnQy~e~aLq~~~~d~A~~il~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNls 1037 (1294)
.++..+......|+.+.|...+.+=..-. .+. +. ....+..+.+++
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~------------------------------~~~---g~-~~~~~~~~~~la 538 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMA------------------------------RQH---DV-YHYALWSLLQQS 538 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------------------------hhh---cc-hHHHHHHHHHHH
Confidence 33455555566778998888864411100 000 00 012345667788
Q ss_pred HHHhhcccHHHHHHHHHHHHHhhh
Q 000770 1038 LHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1038 L~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
.....+|+..+|...+++|+..+.
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 888999999999999999998765
No 163
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=25.05 E-value=4.1e+02 Score=32.40 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=111.5
Q ss_pred hHHh-hhhhccccHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHhcCCCC--CCcc
Q 000770 623 GVLN-KLKQVELSNEQCVEMALLILNQDANK--LEGMKKALSLLSRALEADPT---SEILWITYLLIFYSNTNS--VGKD 694 (1294)
Q Consensus 623 di~n-~vle~p~D~elwlkLAl~~Lnq~~n~--~e~l~~AL~vLSRALEan~~---S~~LW~~YL~Ly~q~~~~--ee~~ 694 (1294)
++.+ ....=|.+.++|+-|+-.+...+... .+.+++|+.-|-.. .++. .-+==-.+-+.|++...- ..-.
T Consensus 110 ~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e--~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR 187 (372)
T PRK15338 110 EFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEE--TDPKTLKAGINCALKARLFGKALSLKPGLLR 187 (372)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhh--cCcHHHHhcCcHHHHHHHHHhhcCCCHHHHH
Confidence 4444 33345888999999988777554332 35666666655431 2221 111123577888887654 4556
Q ss_pred chHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCcc----------------chhhHHHHHHH
Q 000770 695 DMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEM----------------HASACILDLFL 758 (1294)
Q Consensus 695 eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~----------------~~SA~iLDl~L 758 (1294)
+.+-..|.+..+-..+|=.||.. +-.+.|..+-.=+..+|...-.+.+.+-. ..|+-. +|.
T Consensus 188 ~lYR~Fl~~d~~~~~iY~~Wiee-yg~~~R~~il~Fl~~AL~~DlqS~~Ps~~~~EFG~l~~~l~~LR~L~Sad~--~F~ 264 (372)
T PRK15338 188 ASYRQFLQSESHEVEIYSDWIAS-YGYQRRLVVLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKMLRSADL--LFV 264 (372)
T ss_pred HHHHHHHhccCcHHHHHHHHHHH-hCccHHHHHHHHHHHHHHhHHhcCCCCCCHHHHHHHHHHHHHHHHHHhhHH--HHH
Confidence 88899999998888999999887 77777777655555555442222211210 011111 122
Q ss_pred HHHHHHh--hccc-HHHHHHHHHhhccccCCCCCCccccHHHHHhhcCcC----CcchHHHHHHHHHHhccCchhHhhhc
Q 000770 759 QMLQCFC--MSGN-TEKAIQRISRLLIPATGSNDRHSLFLSDILTCLTIS----DKLIFWVCCVYLVIYRKLPDAVLQLL 831 (1294)
Q Consensus 759 Qml~~Lc--~SGn-~~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~s----DRci~WL~cihLv~f~~LP~~i~d~~ 831 (1294)
|-+--.- .++. .+..+.. ++.+.....+.-..++++++..++.. +|..+ -=+....|+.||..+|...
T Consensus 265 ~~~~~~~~~~~~~~~E~~l~l---~~~~~i~~pe~~~~fl~~~l~~~~~~~~~~~ra~~--lQ~l~~af~~lP~~Lf~~~ 339 (372)
T PRK15338 265 KTLLSYPFTKAFNAEESSWLL---LMLSLLQQPEEVDSLLADILGLNALLLSHKDHASL--LQAIYQVCKALPSSLFYEE 339 (372)
T ss_pred HHHHhhHHHHhcccHHHHHHH---HHHHHccCHHHHHHHHHHHHHHHhhcccHHHHHHH--HHHHHHHHhcCcHHHhCCH
Confidence 2111111 1111 2222221 23222221111125777777776664 66554 3346788999999999877
Q ss_pred cccc
Q 000770 832 ECEK 835 (1294)
Q Consensus 832 e~~K 835 (1294)
++.-
T Consensus 340 e~Re 343 (372)
T PRK15338 340 EWQE 343 (372)
T ss_pred HHHH
Confidence 6543
No 164
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=24.96 E-value=1e+02 Score=20.47 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh
Q 000770 1033 YLNLSLHRLLQNDWNEARLAIDAALKA 1059 (1294)
Q Consensus 1033 lLNlsL~~~Lq~~~~EA~~A~ekALka 1059 (1294)
|.+++.+.+..++.++|...++++++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455677778889999999999999874
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=24.80 E-value=1.6e+02 Score=21.95 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCC
Q 000770 636 EQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTS 673 (1294)
Q Consensus 636 elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S 673 (1294)
+.|..+|..++... ..++|+..+-+||+.+|++
T Consensus 2 ~~~~~lg~~~~~~~-----~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG-----NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHCcCC
Confidence 46777777777654 3578888889999888864
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.90 E-value=1.4e+02 Score=35.26 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=38.2
Q ss_pred hHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 000770 623 GVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWIT 679 (1294)
Q Consensus 623 di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~ 679 (1294)
|-+-.|..+|+-..+|.-|-+-++.+.. ...|.-...+|||.+|+++++|..
T Consensus 137 Dce~Al~iDp~yskay~RLG~A~~~~gk-----~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 137 DCESALSIDPHYSKAYGRLGLAYLALGK-----YEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHccCc-----HHHHHHHHHhhhccCCCcHHHHHH
Confidence 4455777888888888888888887753 245566678888888888877765
No 167
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=23.66 E-value=95 Score=37.27 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcC
Q 000770 650 ANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHN 704 (1294)
Q Consensus 650 ~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~ 704 (1294)
....+..++|...|+|||++||+|+-.=+.-=+|+-+++.-+...+-.+...+.+
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 3345678999999999999999998877777778877776655555555555554
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.11 E-value=6e+02 Score=32.10 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhhc------cchHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCC
Q 000770 635 NEQCVEMALLILNQD------ANKLE---GMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNE 705 (1294)
Q Consensus 635 ~elwlkLAl~~Lnq~------~n~~e---~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~ 705 (1294)
.+-++||--.++|-. +++.| .--+|...|+.|--.=|+.+.+...--.||-|-+.+ ++|.|.--
T Consensus 544 ld~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk-------sqafq~~y 616 (840)
T KOG2003|consen 544 LDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK-------SQAFQCHY 616 (840)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch-------hhhhhhhh
Confidence 345677766666642 55543 445889999999999999999999999999887766 47888766
Q ss_pred ccHH---------HHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHh--hcccHHHHH
Q 000770 706 GSYA---------LWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFC--MSGNTEKAI 774 (1294)
Q Consensus 706 ~SY~---------LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc--~SGn~~kAI 774 (1294)
.||+ -||----..+.|.+|..-|-. -.+|.+ ++. .=.|||-+-| .|||+++|+
T Consensus 617 dsyryfp~nie~iewl~ayyidtqf~ekai~y~e-kaaliq-----p~~----------~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 617 DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE-KAALIQ-----PNQ----------SKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH-HHHhcC-----ccH----------HHHHHHHHHHHHhcccHHHHH
Confidence 7775 366544445677665544432 123333 222 3356776666 899999999
Q ss_pred HHHHhh
Q 000770 775 QRISRL 780 (1294)
Q Consensus 775 ~~l~~l 780 (1294)
..-.-+
T Consensus 681 d~yk~~ 686 (840)
T KOG2003|consen 681 DLYKDI 686 (840)
T ss_pred HHHHHH
Confidence 864433
No 169
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.98 E-value=1.2e+02 Score=41.33 Aligned_cols=53 Identities=30% Similarity=0.245 Sum_probs=38.7
Q ss_pred cchhhhHhhhhHhhhHHHHHHHHhhhcchHhhhHHHHHHHHHHHHHHHHhhhh
Q 000770 45 NVDIQSLLDMEELLDKELEEAQEHRRICEIEERKALKAYRKAQRALIEANASC 97 (1294)
Q Consensus 45 n~d~~sl~~mEE~~dkELEeAQehRr~cEieER~AlkaYrkAQraLieAnarC 97 (1294)
+--++--.+.++-++.-|.||++-+++=-=-+++|=+||.||||+|..||+.=
T Consensus 1411 ~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~ 1463 (1758)
T KOG0994|consen 1411 GGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASR 1463 (1758)
T ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444445666666666888888777766667888999999999999888753
No 170
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=22.77 E-value=3.4e+02 Score=29.16 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHH---HHHH
Q 000770 849 DDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLEL---VLMK 925 (1294)
Q Consensus 849 ~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eL---vL~s 925 (1294)
..+-..++++|+..+.. +-+++ .+.--.+..+.+....+.++.|+..++++++.||..... +...
T Consensus 18 ~g~y~~Ai~~f~~l~~~---~P~s~---------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDR---YPNSP---------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp CT-HHHHHHHHHHHHHH----TTST---------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---CCCCh---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Q ss_pred HHhh-ccccCC-----------ccHHHHHHHHhcCCC
Q 000770 926 ARLQ-KHDFGD-----------LSSVGFEEALIKWPK 950 (1294)
Q Consensus 926 ArLq-k~d~~~-----------~~~~~Feeal~~wPK 950 (1294)
+..+ +...+. .++..|+..+.+.|+
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
No 171
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.76 E-value=4.5e+02 Score=33.75 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhCcchhHHH-HHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 000770 900 GLECSMNLLEKYIKLYPSCLELV-LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAEL 978 (1294)
Q Consensus 900 ~~E~a~~Lc~kyvelyP~c~eLv-L~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~i 978 (1294)
+++.|..++..+++.-|.-.+.+ +-.|-++.+...-.=|..=-.+-...|+.+- =|+-.+.|-+-=|+++.|++.
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~----sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL----SWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc----chhhHHHHHHHhcCcHHHHHH
Q ss_pred HHHHhhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHH--HHHHHHHHhhcccHHHHHHHHHHH
Q 000770 979 MDRWFHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFG--YLNLSLHRLLQNDWNEARLAIDAA 1056 (1294)
Q Consensus 979 l~rwf~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~--lLNlsL~~~Lq~~~~EA~~A~ekA 1056 (1294)
+.. .+++|.-|| ||-|.=-=-.++..+-|--||-.|
T Consensus 335 ~SK------------------------------------------at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 335 FSK------------------------------------------ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred HHH------------------------------------------HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Q ss_pred HHhhhh
Q 000770 1057 LKAAAS 1062 (1294)
Q Consensus 1057 Lkaa~~ 1062 (1294)
-+++.+
T Consensus 373 arl~~G 378 (611)
T KOG1173|consen 373 ARLMPG 378 (611)
T ss_pred HHhccC
No 172
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=22.67 E-value=8.6e+02 Score=29.72 Aligned_cols=175 Identities=12% Similarity=0.102 Sum_probs=107.8
Q ss_pred hHhhHHHHHHHhhhHHHHHHHHHHHHHh----CcchhHH---H-HHHHHhhccccCCccHHHHHHHHhcCCCCCCchHHH
Q 000770 887 FAVNHIWCMAVLNGLECSMNLLEKYIKL----YPSCLEL---V-LMKARLQKHDFGDLSSVGFEEALIKWPKGVPGIQCI 958 (1294)
Q Consensus 887 lalN~I~c~~ale~~E~a~~Lc~kyvel----yP~c~eL---v-L~sArLqk~d~~~~~~~~Feeal~~wPKea~GiQ~I 958 (1294)
..+|++..+.....+++=++|.+.+-.+ .+....+ + +.+-|=.+.+..+.+..+++.++.......|-.=||
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 4569999999999999999999887776 3333333 2 333333335555888999999898999999988888
Q ss_pred HH-HHHHHHHhcCChh---hHHHHHHHHhhhhhhcccccccCCccccC--CCCCCCCCC------CCCCCCcccCCCCcc
Q 000770 959 WN-QYVEYALQNGRHD---FAAELMDRWFHSVWKVQYSQVEISDPLVA--DMSHSSPES------TSTSDPEFSVSNRNQ 1026 (1294)
Q Consensus 959 Wn-Qy~e~aLq~~~~d---~A~~il~rwf~s~~k~~~~~~~~~d~~~~--~~s~~sl~~------~~~s~~d~l~~~s~q 1026 (1294)
+= +|..-.++.+..| +=+.| .||+..|+.+...+.+++...= ...+....+ +..-+.-....++..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi--~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAI--EWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHH--HHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 87 5666555532222 33334 8999999999877777765541 000000000 000000011122222
Q ss_pred hhHHHH-HHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Q 000770 1027 MDVMFG-YLNLSLHRLLQNDWNEARLAIDAALKAAASE 1063 (1294)
Q Consensus 1027 ~D~mf~-lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~e 1063 (1294)
.+.=|| .--|.=...|-+|.+.|+.|+++|++...+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 333344 2222223458899999999999999887654
No 173
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=22.18 E-value=1.5e+03 Score=27.81 Aligned_cols=239 Identities=16% Similarity=0.188 Sum_probs=136.1
Q ss_pred CCccchHHHhhhcCCccHHHHHHHHhhccCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccH
Q 000770 691 VGKDDMFSYSVKHNEGSYALWLMYINSRTPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNT 770 (1294)
Q Consensus 691 ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~ 770 (1294)
..+++--.+|=+. +++|.-=+.||-++ .-|.+.+.+-.+|+ .. .+ -.|+=|-+=.++---|-+
T Consensus 23 saqq~~~~qa~~l-sr~Yv~GlNfLLs~-Q~dKAvdlF~e~l~---~d-----~~-------t~e~~ltLGnLfRsRGEv 85 (389)
T COG2956 23 SAQQDKQDQANRL-SRDYVKGLNFLLSN-QPDKAVDLFLEMLQ---ED-----PE-------TFEAHLTLGNLFRSRGEV 85 (389)
T ss_pred HHHhhHHHHHhhc-cHHHHhHHHHHhhc-CcchHHHHHHHHHh---cC-----ch-------hhHHHHHHHHHHHhcchH
Confidence 4455666667667 78888888888773 33444444444443 11 11 124444444555578999
Q ss_pred HHHHHHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCCCCcc
Q 000770 771 EKAIQRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQLEDD 850 (1294)
Q Consensus 771 ~kAI~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~l~~~ 850 (1294)
++||-+=|+++.++.- |...|.++ ++-+.=.=+-..++|+.|- +|..==...+-...
T Consensus 86 DRAIRiHQ~L~~spdl----------------T~~qr~lA----l~qL~~Dym~aGl~DRAE~---~f~~L~de~efa~~ 142 (389)
T COG2956 86 DRAIRIHQTLLESPDL----------------TFEQRLLA----LQQLGRDYMAAGLLDRAED---IFNQLVDEGEFAEG 142 (389)
T ss_pred HHHHHHHHHHhcCCCC----------------chHHHHHH----HHHHHHHHHHhhhhhHHHH---HHHHHhcchhhhHH
Confidence 9999999999887332 33333322 2222223344567777661 11100000111123
Q ss_pred hHHHHHHHH------HHHH----HhhccccCCCcccccc-ccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchh
Q 000770 851 EKQRAIKLI------EMAV----NSVELYSNGESLEKET-NLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCL 919 (1294)
Q Consensus 851 ~~~~llkLf------e~Av----~s~~~~~~~Esl~~~~-~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~ 919 (1294)
-.++++.+. +.|+ +-++ +...+ ++..||+ +--+---..+=+.++.|+.++.|.++..|.|+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k-------~~~q~~~~eIAqf-yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv 214 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVK-------LGGQTYRVEIAQF-YCELAQQALASSDVDRARELLKKALQADKKCV 214 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-------cCCccchhHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHhhCccce
Confidence 344554443 2333 3333 22222 4555553 22222222333567889999999999999999
Q ss_pred HHHHHHHHhh-ccccCCccHHHHHHHHhcCCCCCCchHHHHHH-HHHHHHhcCChhhHHHHHHH
Q 000770 920 ELVLMKARLQ-KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQ-YVEYALQNGRHDFAAELMDR 981 (1294)
Q Consensus 920 eLvL~sArLq-k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQ-y~e~aLq~~~~d~A~~il~r 981 (1294)
---.++.|+. .++....+...|+.+++..|-=+| .+=.. +..|+=. |+++..+.+|++
T Consensus 215 RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~---evl~~L~~~Y~~l-g~~~~~~~fL~~ 274 (389)
T COG2956 215 RASIILGRVELAKGDYQKAVEALERVLEQNPEYLS---EVLEMLYECYAQL-GKPAEGLNFLRR 274 (389)
T ss_pred ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH---HHHHHHHHHHHHh-CCHHHHHHHHHH
Confidence 9888999998 666668888889988888887765 33332 2334433 377777777766
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.01 E-value=3.7e+02 Score=30.96 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=68.2
Q ss_pred cchHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHh
Q 000770 849 DDEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARL 928 (1294)
Q Consensus 849 ~~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArL 928 (1294)
+++..-+..-..-|+..|-.-. . +.--.++.|--.|+.-|+.+|+|++=|-+.++++|+..--++--|-+
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~------~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTS------T----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred cccHHHHHHHHHHHHHhCcccc------H----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 4455556666666666663111 1 12235788999999999999999999999999999988877766777
Q ss_pred h-ccccCCccHHHHHHHHhcCCCCC
Q 000770 929 Q-KHDFGDLSSVGFEEALIKWPKGV 952 (1294)
Q Consensus 929 q-k~d~~~~~~~~Feeal~~wPKea 952 (1294)
| +.+-.+-++.-+...+..-|+..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 7 55545677777777777777654
No 175
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.77 E-value=4.6e+02 Score=27.31 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh----cCCCCCCccchHHHhhhc--------CCccH-HHHHHHHhhccCccchHHHHHHHHHHHhccccC
Q 000770 675 ILWITYLLIFY----SNTNSVGKDDMFSYSVKH--------NEGSY-ALWLMYINSRTPLNHRLDAYDAALSVLCRCASA 741 (1294)
Q Consensus 675 ~LW~~YL~Ly~----q~~~~ee~~eM~e~AVq~--------~~~SY-~LWL~YLnsr~~fddr~~ay~raL~~L~~~aSa 741 (1294)
.+|..|+.-.- +.+...+...+.+.+++. +.+-| .+|+.|++. +++...+|.-+- .
T Consensus 23 ~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~---~~dp~~if~~L~--------~ 91 (125)
T smart00777 23 DLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN---CDEPRELFQFLY--------S 91 (125)
T ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh---cCCHHHHHHHHH--------H
Q ss_pred CCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHH
Q 000770 742 SDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRIS 778 (1294)
Q Consensus 742 ~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~ 778 (1294)
...|.+++..++ .....|-..|+.++|-++++
T Consensus 92 ~~IG~~~AlfYe-----~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 92 KGIGTKLALFYE-----EWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCcchhhHHHHH-----HHHHHHHHcCCHHHHHHHHH
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=5.8e+02 Score=30.16 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHHHHHHHhhccCccc-hHHH-HHH
Q 000770 653 LEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYALWLMYINSRTPLNH-RLDA-YDA 730 (1294)
Q Consensus 653 ~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~LWL~YLnsr~~fdd-r~~a-y~r 730 (1294)
.+.+++..-.|-+-|-.||.+.+=|.+-=++|-+.+.-.+...=+.+|++..+.+=++|+-|--.-+.-.| .+.. =..
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 34578888889999999999999999999999999998888899999999999999999988766433333 1111 111
Q ss_pred HHHHHhccccCCCCCccchhhHHHHHHHHHHHHHhhcccHHHHHHHHHhhccccCCC
Q 000770 731 ALSVLCRCASASDGDEMHASACILDLFLQMLQCFCMSGNTEKAIQRISRLLIPATGS 787 (1294)
Q Consensus 731 aL~~L~~~aSa~~~d~~~~SA~iLDl~LQml~~Lc~SGn~~kAI~~l~~lL~~a~~s 787 (1294)
+|...-. ..+.+ |-=++| +-....+.|++..|++..+.+|.+..+.
T Consensus 215 ll~~al~---~D~~~-------iral~l-LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 215 LLRQALA---LDPAN-------IRALSL-LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHh---cCCcc-------HHHHHH-HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 1111111 11122 111333 4555669999999999999999997773
No 177
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.79 E-value=1.3e+02 Score=37.30 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=55.4
Q ss_pred hcCCCChHHHHHHHHHHhcCCCCCCccchHHHhhhcCCccHHH---H----HHHHhhccCccchHHHHHHHHHH
Q 000770 668 EADPTSEILWITYLLIFYSNTNSVGKDDMFSYSVKHNEGSYAL---W----LMYINSRTPLNHRLDAYDAALSV 734 (1294)
Q Consensus 668 Ean~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~AVq~~~~SY~L---W----L~YLnsr~~fddr~~ay~raL~~ 734 (1294)
|++|.....|...=..|++.+.-++..++|+.|++.+|..... | .-|... ..+++++..|.+||..
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999998875432 4 344444 7888899999999885
No 178
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=20.61 E-value=4.6e+02 Score=34.53 Aligned_cols=169 Identities=18% Similarity=0.116 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHh---------------C
Q 000770 851 EKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKL---------------Y 915 (1294)
Q Consensus 851 ~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvel---------------y 915 (1294)
.++.+=+++..|+=+-++.+ .+++. +.=+.|.|+.++..-..|-.+.++.+|. .
T Consensus 401 q~~laell~slGitksAl~I-------~Erle----mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVI-------FERLE----MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHH-------HHhHH----HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 34445555555554444222 33444 4447889999999888889999998882 2
Q ss_pred cchhHHH-----HHHHHhh--------ccccCCccHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 000770 916 PSCLELV-----LMKARLQ--------KHDFGDLSSVGFEEALIKWPKGVPGIQCIWNQYVEYALQNGRHDFAAELMDRW 982 (1294)
Q Consensus 916 P~c~eLv-----L~sArLq--------k~d~~~~~~~~Feeal~~wPKea~GiQ~IWnQy~e~aLq~~~~d~A~~il~rw 982 (1294)
|+|-|=. -.+||-| ++.......+-|+..|...|=-- ..||-|..-|||-++...|-+-..|
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~----~~wf~~G~~ALqlek~q~av~aF~r- 544 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQL----GTWFGLGCAALQLEKEQAAVKAFHR- 544 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccch----hHHHhccHHHHHHhhhHHHHHHHHH-
Confidence 3333321 2334522 21223445566777777776554 4899999999999888877777655
Q ss_pred hhhhhhcccccccCCccccCCCCCCCCCCCCCCCCcccCCCCcchhHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Q 000770 983 FHSVWKVQYSQVEISDPLVADMSHSSPESTSTSDPEFSVSNRNQMDVMFGYLNLSLHRLLQNDWNEARLAIDAALKAAAS 1062 (1294)
Q Consensus 983 f~s~~k~~~~~~~~~d~~~~~~s~~sl~~~~~s~~d~l~~~s~q~D~mf~lLNlsL~~~Lq~~~~EA~~A~ekALkaa~~ 1062 (1294)
|.++.| |---.|-|++=..+-.+...+|.-++-.|+|---.
T Consensus 545 -----------------------cvtL~P----------------d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 545 -----------------------CVTLEP----------------DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred -----------------------HhhcCC----------------CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 455555 22346888988888899999999888888887632
Q ss_pred hHHHHHHHHHHHHH
Q 000770 1063 EHFKHCVREHAMLL 1076 (1294)
Q Consensus 1063 e~~~hcwrEya~F~ 1076 (1294)
. =+.|--|+...
T Consensus 586 ~--w~iWENymlvs 597 (777)
T KOG1128|consen 586 H--WQIWENYMLVS 597 (777)
T ss_pred C--Ceeeechhhhh
Confidence 1 24566555443
No 179
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.34 E-value=1.7e+02 Score=23.27 Aligned_cols=29 Identities=28% Similarity=0.147 Sum_probs=23.4
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhh
Q 000770 1033 YLNLSLHRLLQNDWNEARLAIDAALKAAA 1061 (1294)
Q Consensus 1033 lLNlsL~~~Lq~~~~EA~~A~ekALkaa~ 1061 (1294)
|.++.-...-+|++++|...|++||....
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56777777889999999999999996554
No 180
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.19 E-value=3.2e+02 Score=27.82 Aligned_cols=106 Identities=15% Similarity=0.284 Sum_probs=64.0
Q ss_pred hhhHHhhhhhcc---ccHHHHHHHHHHHhhh-cc-chHHHHHHHHHHHHHHhh------cCCCChHHHHHHHHHHhcCCC
Q 000770 621 RNGVLNKLKQVE---LSNEQCVEMALLILNQ-DA-NKLEGMKKALSLLSRALE------ADPTSEILWITYLLIFYSNTN 689 (1294)
Q Consensus 621 ~~di~n~vle~p---~D~elwlkLAl~~Lnq-~~-n~~e~l~~AL~vLSRALE------an~~S~~LW~~YL~Ly~q~~~ 689 (1294)
|...+.+|.... .-.+.|+..-.-..+- +. +...++...|...-|.+. +|+--..||+.|..++.
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---- 80 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---- 80 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS----
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc----
Confidence 344555444433 4467787665444332 12 223344444433344443 44556789999999765
Q ss_pred CCCccchHHHhhhcC-----CccHHHHHHHHhhccCccchHHHHHHHH
Q 000770 690 SVGKDDMFSYSVKHN-----EGSYALWLMYINSRTPLNHRLDAYDAAL 732 (1294)
Q Consensus 690 ~ee~~eM~e~AVq~~-----~~SY~LWL~YLnsr~~fddr~~ay~raL 732 (1294)
+..++|.+..... +-=|..|=.++-.+..+..+..+|.++|
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4446666554321 4669999999999999999999999875
No 181
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=20.10 E-value=7.4e+02 Score=32.85 Aligned_cols=216 Identities=15% Similarity=0.211 Sum_probs=134.3
Q ss_pred hhhhHHhhhhhccccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcCCCCCCccchHHH
Q 000770 620 SRNGVLNKLKQVELSNEQCVEMALLILNQDANKLEGMKKALSLLSRALEADPTSEILWITYLLIFYSNTNSVGKDDMFSY 699 (1294)
Q Consensus 620 ~~~di~n~vle~p~D~elwlkLAl~~Lnq~~n~~e~l~~AL~vLSRALEan~~S~~LW~~YL~Ly~q~~~~ee~~eM~e~ 699 (1294)
..+.++-++..+|.-.+-|.-+-+-.|. .+....|...+-|..-.+|+..+=|-.---.|=+.+.+.+.---+--
T Consensus 504 ~~~hle~sl~~nplq~~~wf~~G~~ALq-----lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 504 ADKHLERSLEINPLQLGTWFGLGCAALQ-----LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHHHHHHHhhcCccchhHHHhccHHHHH-----HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 4456677999999999999877655443 55678899999999999999999998777777666666655566778
Q ss_pred hhhcCCccHHHHHHHHhhc---cCccchHHHHHHHHHHHhccccCCCCCccchhhHHHHHHHHH-HHHHh-hcccHHHHH
Q 000770 700 SVKHNEGSYALWLMYINSR---TPLNHRLDAYDAALSVLCRCASASDGDEMHASACILDLFLQM-LQCFC-MSGNTEKAI 774 (1294)
Q Consensus 700 AVq~~~~SY~LWL~YLnsr---~~fddr~~ay~raL~~L~~~aSa~~~d~~~~SA~iLDl~LQm-l~~Lc-~SGn~~kAI 774 (1294)
|++++-.+..+|.+|.-+- ..|+++..+|.|++.. +.....+ . +|-.+.+. ++.+. .++....++
T Consensus 579 AlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~--~~~~~d~-~-------vl~~iv~~~~~~~~d~s~de~~~~ 648 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL--RKKYKDD-E-------VLLIIVRTVLEGMTDESGDEATGL 648 (777)
T ss_pred HhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh--hhhcccc-h-------hhHHHHHHHHhhccccccchhhhh
Confidence 9999988889999998773 7889999999996643 2222221 1 22222211 11111 123333222
Q ss_pred HHHHhhccccCCCCCCccccHHHHHhhcCcCCcchHHHHHHHHHHhccCchhHhhhcccccccccccCCCCC---CCcch
Q 000770 775 QRISRLLIPATGSNDRHSLFLSDILTCLTISDKLIFWVCCVYLVIYRKLPDAVLQLLECEKELFAIDWPPVQ---LEDDE 851 (1294)
Q Consensus 775 ~~l~~lL~~a~~sd~p~~~sls~Il~~LT~sDRci~WL~cihLv~f~~LP~~i~d~~e~~KElf~I~W~~v~---l~~~~ 851 (1294)
++..+ . .|.-++...+.+.+ -|.-+.+ .|+..|..-.+..+.-=+.+.-.|.+-. ..+++
T Consensus 649 ---k~~~k---e-------lmg~~~~qv~~s~~--~wrL~a~--l~~~~~~ek~~~~eka~~~l~k~~~~~s~~~~w~~d 711 (777)
T KOG1128|consen 649 ---KGKLK---E-------LLGKVLSQVTNSPE--TWRLYAL--LYGNGSSEKLDENEKAYRALSKAYKCDTGSNVWEKD 711 (777)
T ss_pred ---hHHHH---H-------HHHHHHHHHhCchh--hhHhHhh--hccccchhcccccHHHHhhhhhCccccccccCCccc
Confidence 22222 1 22223333333444 3666666 8999998888887644444444555221 11345
Q ss_pred HHHHHHHHHHHHHhhc
Q 000770 852 KQRAIKLIEMAVNSVE 867 (1294)
Q Consensus 852 ~~~llkLfe~Av~s~~ 867 (1294)
.+....+.+.|+.-+.
T Consensus 712 ~~~~~~~v~~a~~l~~ 727 (777)
T KOG1128|consen 712 ITLFKEVVQAALGLAH 727 (777)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5666666666555443
No 182
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.09 E-value=1.9e+02 Score=28.98 Aligned_cols=82 Identities=7% Similarity=-0.027 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHHhhccccCCCccccccccchhhhhHhhHHHHHHHhhhHHHHHHHHHHHHHhCcchhHHHHHHHHhh
Q 000770 850 DEKQRAIKLIEMAVNSVELYSNGESLEKETNLRSAHCFAVNHIWCMAVLNGLECSMNLLEKYIKLYPSCLELVLMKARLQ 929 (1294)
Q Consensus 850 ~~~~~llkLfe~Av~s~~~~~~~Esl~~~~~lr~aq~lalN~I~c~~ale~~E~a~~Lc~kyvelyP~c~eLvL~sArLq 929 (1294)
++.+.+.+.|+.++..-. ++. +.....+++.+++.....++.|..++... .-.|.-.....+..+++
T Consensus 62 g~~~~A~~~l~~~~~~~~----d~~--------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAP----DPE--------LKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIY 128 (145)
T ss_pred CCHHHHHHHHHHHHhhCC----CHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHH
Confidence 455566666666665432 221 11233445566666666666666666552 23333333444455555
Q ss_pred -ccccCCccHHHHHHH
Q 000770 930 -KHDFGDLSSVGFEEA 944 (1294)
Q Consensus 930 -k~d~~~~~~~~Feea 944 (1294)
+++..+.....|+.|
T Consensus 129 ~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKA 144 (145)
T ss_pred HHCCCHHHHHHHHHHh
Confidence 333334444444443
Done!