Query 000772
Match_columns 1293
No_of_seqs 104 out of 127
Neff 4.7
Searched_HMMs 46136
Date Mon Apr 1 23:27:41 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03099 PIR Protein PIR; Prov 100.0 0E+00 0E+00 3494.7 110.7 1226 3-1291 2-1232(1232)
2 KOG3534 p53 inducible protein 100.0 0E+00 0E+00 3310.2 78.9 1217 2-1291 3-1252(1253)
3 PF05994 FragX_IP: Cytoplasmic 100.0 3E-246 6E-251 2220.3 52.3 804 403-1254 3-820 (820)
4 PF07159 DUF1394: Protein of u 100.0 9.9E-64 2.2E-68 556.2 19.0 277 41-328 3-293 (303)
5 KOG3951 Uncharacterized conser 100.0 2.5E-56 5.5E-61 473.6 13.8 242 56-305 29-288 (321)
6 PF14745 WASH-7_N: WASH comple 98.9 1.4E-05 3.1E-10 98.7 40.8 514 23-641 26-566 (567)
7 PF09735 Nckap1: Membrane-asso 98.1 0.038 8.3E-07 73.3 44.7 812 58-1036 3-922 (1116)
8 PF14744 WASH-7_mid: WASH comp 90.0 20 0.00043 42.8 18.7 280 684-1033 25-329 (350)
9 PRK02866 cyanate hydratase; Va 50.7 1.9 4E-05 45.6 -3.2 45 1151-1215 86-130 (147)
10 TIGR00673 cynS cyanate hydrata 50.4 1.9 4E-05 45.8 -3.3 45 1151-1215 89-133 (150)
11 COG4741 Predicted secreted end 49.0 9.5 0.0002 40.6 1.6 32 856-892 87-118 (175)
12 KOG3534 p53 inducible protein 48.1 23 0.0005 45.2 4.8 100 70-169 131-230 (1253)
13 COG1513 CynS Cyanate lyase [In 42.1 3.8 8.2E-05 42.4 -2.4 48 1150-1217 88-135 (151)
14 cd00559 Cyanase_C Cyanase C-te 37.3 3.1 6.8E-05 38.6 -3.4 44 1151-1214 8-51 (69)
15 KOG1917 Membrane-associated he 33.6 2.3E+02 0.005 38.0 10.3 99 928-1036 826-924 (1125)
16 PHA02888 hypothetical protein; 32.9 71 0.0015 30.7 4.4 42 571-618 4-47 (96)
17 PF02560 Cyanate_lyase: Cyanat 30.6 3.7 8E-05 38.5 -4.1 45 1151-1215 12-56 (73)
18 PF10107 Endonuc_Holl: Endonuc 30.6 25 0.00054 37.6 1.3 33 856-893 74-106 (156)
19 PF08146 BP28CT: BP28CT (NUC21 30.2 33 0.00072 36.4 2.1 35 709-743 34-72 (153)
20 COG1722 XseB Exonuclease VII s 20.1 1.9E+02 0.0042 28.0 5.0 39 795-833 15-56 (81)
No 1
>PLN03099 PIR Protein PIR; Provisional
Probab=100.00 E-value=0 Score=3494.71 Aligned_cols=1226 Identities=77% Similarity=1.202 Sum_probs=1193.9
Q ss_pred ccCHHHHHhhcccCCCCCCCccccCCcceEeeccCCCCCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000772 3 AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTY 82 (1293)
Q Consensus 3 ~v~~~~av~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~tnf~Dr~a~~t~~~eE~e~~~~ln~vLeeg~~~l~~LytY 82 (1293)
|||++|||++|++||||||||||||+|++|.-+|+++||||||+||+||+||++||+++++++|++|+||++++++||||
T Consensus 2 ~~~~~~av~~L~~~~l~d~QP~Ie~~~~~i~~~~y~~~~~tnf~D~~Ay~~~~aEea~~~~~ln~ll~eG~e~a~~LYT~ 81 (1232)
T PLN03099 2 AVPVEEAVAALSTFSLEDEQPDVQGLAVTLSAGRAATESPIDYSDVAAYQLSLSEDTKAINQLNTLIQEGKEMVSILYTY 81 (1232)
T ss_pred CCcHHHHHHHHhcCCCCCCCccccCCCcceecccccccCCCcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 79999999999999999999999999999995555789999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhcCCCchHHHHHHHHHHH
Q 000772 83 RSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLD 162 (1293)
Q Consensus 83 RscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~FyeFs~~a~~~l~~~l~~l~h~E~~q~l~se~~L~~La~iLd 162 (1293)
|||||||||+++|+|||++||||+|++||.|||+||++||+||++|+.+||++|++|||.|||+++|+|+||++|+++||
T Consensus 82 RsCsrAlPq~k~~~q~nr~eiYe~t~eVLepEi~KL~~fm~fq~~Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~ln 161 (1232)
T PLN03099 82 RSCVKALPQLPESMKHSQADLYLETYQVLDLEIGRLREIQRWQSSAASKLAADMQRFSRPERRINGPTVTHMWSMLKLLD 161 (1232)
T ss_pred HHHHhhcCCCCccccccHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCCCCcchhHHhhhHhhhhhccCCchhHHHHhhhhhhhhcchhhHHHHHHHHHHHhccccCCcchHHHH
Q 000772 163 VLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDIL 242 (1293)
Q Consensus 163 f~l~lD~LK~~k~sIqNDFS~YRRa~sr~~~~~~d~~~v~~E~~~LSlFlA~~~pil~~L~~~~~~i~k~l~~~~~ed~L 242 (1293)
|+++||+|||||+||+||||+|||||.++.++|+|++++++|+++|||||||+|.|+.+|++++.+++ ||||+|
T Consensus 162 mfa~LD~LKNmKAsi~NDfS~ykRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~------gyediL 235 (1232)
T PLN03099 162 VLLQLDHLKNAKASIPNDFSWYKRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVN------NVEDIL 235 (1232)
T ss_pred HHHHHHHHhhhhccccccHHHHHHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhcc------CHHHHH
Confidence 99999999999999999999999999888888999999997789999999999999999999999999 999999
Q ss_pred HHHHHHHHHhhhcccccCCccchhhheeeceeeeeecCCCCchhhHHhHhchhHHHhhhhcCCccccCCCcccCHHHHHh
Q 000772 243 QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILK 322 (1293)
Q Consensus 243 ~t~anvC~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~Kri~l~~~~kifK~~pVVPl~gDm~i~~~~~~k 322 (1293)
++++|+|++|+|+++|++|+|||+|||||+|+++|+|++++++...+|||||+|++|||
T Consensus 236 ~~ivn~C~~~yE~~~yl~p~EKH~LlrVm~f~l~L~ds~~k~~~~~~Kri~i~rldkiF--------------------- 294 (1232)
T PLN03099 236 QVLIVFCLESLESDFVLLYSERHILLRVLPVLVVLATSSEKEGESLFKRIKINRLINIF--------------------- 294 (1232)
T ss_pred HHHHHHHHHHhccCceecCccceeEEEeeeeeEEEecccccchHHHhhhccHHHHHHHh---------------------
Confidence 99999999999999999999999999999999999998777766678999999999998
Q ss_pred hhchhhhhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhhhHhh
Q 000772 323 ELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEV 402 (1293)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~~~~~ 402 (1293)
++||+|++||++||+||++|++|||+++|+++++++.+++|.++++.+
T Consensus 295 --------------------------------~~~y~I~~~m~~iR~dh~~f~~~~A~~~N~~~~~~~~~~~d~e~~~~~ 342 (1232)
T PLN03099 295 --------------------------------QREYLIVNHMGAIRAEHDDFCIRFASAMNQLQLLKSADGVDTAWSREI 342 (1232)
T ss_pred --------------------------------cchHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCccchhhhhhh
Confidence 247899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 000772 403 KGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS 482 (1293)
Q Consensus 403 ~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~~ 482 (1293)
++++|++||+||||||+||++|||||||||+||++++. .|++||+++++||||||||||+|||+||||+||||||+++
T Consensus 343 k~~~~d~~l~GlqLLS~WT~~V~Eq~aWKl~~P~~~~~--~n~e~p~~~eeYEravRyNYt~eEr~aLvelIsmIK~l~~ 420 (1232)
T PLN03099 343 KENMYDVVVEGFQLLSEWTGRIWEQCAWKFSRPAKDAT--PDPERSGSVTDYEKVVRCNYTAEERKALVELIGYIKGVGS 420 (1232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--cCCCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996554 5889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCCC
Q 000772 483 MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRG 562 (1293)
Q Consensus 483 lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~~ 562 (1293)
+|.++|++++++||++||+++|||||++|++|||+++||||++++||++||++++||++|.+|.++++.++ ++++...+
T Consensus 421 ll~~~et~i~~ai~~~I~~~lQdFvQ~~L~~~Lr~~~kkKk~l~~il~~iR~~~~DW~~g~~p~~~~~~~~-~~~~~~~~ 499 (1232)
T PLN03099 421 MLERCDTLVADALWETIHAQVQDFVQNKLATMLRTTFRKKKELSRILSDMRTIAADWMANTRPEEKMPSRQ-RENDESRP 499 (1232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCcccchhhcC-CCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888876443 33344567
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHHHhhcccc
Q 000772 563 NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLG 642 (1293)
Q Consensus 563 ~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL~~~~DLS 642 (1293)
++++||+||||+|||||+|+||+++++||+.+|++|+||.++++++++++++|++||++|+||+|||||++||++|||||
T Consensus 500 ~~i~pr~v~psstQL~~lr~~l~slis~~s~kk~~g~F~~s~~~i~~~~i~~ie~Fl~~S~~f~~LL~~s~tL~~~~Dls 579 (1232)
T PLN03099 500 NFFYPRPVAPTAAQLHCLQFLIHELVSGGSPKKPGGFFGNNGSEIPVNDLKQLETFFNKLAFFPHILDYRATIGHLTDLG 579 (1232)
T ss_pred cccCcCCCCCcHHHHHHHHHHHHHHhCCCCcccccccccccccCCChHHHHHHHHHHHHhhhHHHHhchHHHHHHhhhhH
Confidence 88999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccCCeeeccCcCcchHHHHHHHhhcCCcchhhhhcccccccchHHHHHHHHHhhhhhHHHHHHHHhhHHHH
Q 000772 643 FLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI 722 (1293)
Q Consensus 643 ~LWfREfyLEl~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYDEIEAEvnLCFDq 722 (1293)
||||||||||++++||||||||||||||||||++++|+|+|+||||||||||||++||++||||||||||||||||||||
T Consensus 580 ~LWFREfyLE~~~~iQFPIe~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDq 659 (1232)
T PLN03099 580 FLWFREFYLETSRVIQFPIECSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQ 659 (1232)
T ss_pred HHHHHHHHHhhcceeecchhcCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCccccccccCCCCcccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHHHHHH
Q 000772 723 FVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFL 802 (1293)
Q Consensus 723 lv~kLSd~iF~~yK~~Aas~lLd~~f~~~~~~~~~~~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~a 802 (1293)
|||||||+||+|||++|+|++||++|+++|++|.++++||+||++|||||||+||||+||||+||+||||++|+++||.|
T Consensus 660 lv~klsd~iF~~yK~~A~s~~Ld~~f~~~~~~~~~~~~~p~Ry~~LlqQr~v~lLGr~IDL~~LItQRlN~~~~~~Le~~ 739 (1232)
T PLN03099 660 LVSKLSESIFTYYKSRAASKLLDPSFLAAVDNGEKFSVQPKRYDALFKMRRVKILGRTIDLASLIAQRMNKIFRENLDFL 739 (1232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHhhhhccccCCCChHHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccccccccccC
Q 000772 803 FDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTT 882 (1293)
Q Consensus 803 i~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~yn~~t 882 (1293)
|+||||+||||||||+++|+|||+||+||||+|+|||||+||+||||++|++|++||||+||||||++||+||||||++|
T Consensus 740 i~rfEs~dL~~ivele~ll~ilr~TH~LLse~L~LdpFd~m~~Ean~~~s~~S~~sri~~hv~~el~~Df~PNy~~n~~T 819 (1232)
T PLN03099 740 FERFESQDLCSVVELQRLVEILRLTHELLSEHLSIDPFSLMLGEMQENISLVSFSSRLASQIWSEMQNDFLPNFILCNTT 819 (1232)
T ss_pred HHHHhccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHhccCCccchhhHHHHHHHHHHhccccccceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000772 883 QRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKI 962 (1293)
Q Consensus 883 ~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i 962 (1293)
|||||++.+++++++|+++|+++|+|+||||+||+||++|+++|++|||.|||+|||||||||||||||+||||+++++|
T Consensus 820 ~RFVrs~~~~~~~~~Re~~P~~~~~~~~Gtk~Ln~A~~~~~~ly~~f~G~pH~~ai~rLlG~~~la~vi~~lL~~i~~~i 899 (1232)
T PLN03099 820 QRFVRSSKVPQRPTRRPSVPSAKPSFLCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKI 899 (1232)
T ss_pred chhcccccCcccccccCCCCCCCcceeecchHHHHHHHHHHHHHhcccCcHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhccccccchHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhHHHH
Q 000772 963 TTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFM 1042 (1293)
Q Consensus 963 ~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~~~dlk~~v~~~frElGN~i~~~~lle~aL~q~e~~d~~ 1042 (1293)
+++.|||++|+++|||+|+||++|||++||++||++||+|++.||||+||||+||||||+|+||+|||+||+|+|++||+
T Consensus 900 ~~l~~~v~~L~~~mPk~~~Lp~~dyG~~g~~~~~~~qL~~~~~yelk~ev~q~fREiGn~i~f~~Lld~aL~qee~~~~~ 979 (1232)
T PLN03099 900 TTLEPMIEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKYEGKSEVLRGLKEIGSLIFWMSLLDIAMREVETVQFM 979 (1232)
T ss_pred HHHHHHHHHHHHhCccccCCCccccCchHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999855999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCCCcccccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhhhHHhhhhhhccccccHHHHHHHH
Q 000772 1043 QTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAF 1122 (1293)
Q Consensus 1043 ~aaPf~gi~P~~~~~~~~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a~~~d~l~~~~l~~gs~f~~~L~~ 1122 (1293)
|||||+|++|+++||. ++++++|+|++++++++..+|+++|||++|.+|.+|.+||.+||+|||+||||||+||++|+|
T Consensus 980 ~aAPflgi~P~~~gq~-~~~~~~ys~~~~~~~~~~~~~v~~~~~~~~~~~~~~~kq~~~adlL~kerl~~GSvfe~~L~~ 1058 (1232)
T PLN03099 980 QVAPWLGLVPGKEGQL-QQADDNESPLVSLFKEATSAVVSSPGCLNPSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLAF 1058 (1232)
T ss_pred HhcccccCCCCCchhh-hhhhcccchHHHHHHHHhhhhhcCcccCCchhhcchhhhhhhhhHHHHhhcccccHHHHHHHH
Confidence 9999999999998876 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCccccCCCCCeeeecccchHhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhcccccccccc
Q 000772 1123 TSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFD 1202 (1293)
Q Consensus 1123 ~~~~L~~~~~~W~g~p~ngv~~id~~~ef~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lD 1202 (1293)
++++|+++|++|++||+||||+||||+||||||||||||||+|++++|+++||+|||||+|||||||+|||||+|||+||
T Consensus 1059 ~~~~L~~~~~~W~~~P~nGvi~Id~~~eFhRlwSalQfv~c~p~~~~e~~~ee~fGDgl~WaGctii~lLgQq~rFe~lD 1138 (1232)
T PLN03099 1059 TSAVLDRHRSKWSAPPKTGFIDITTSKDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLD 1138 (1232)
T ss_pred HHHHHhcccCcccCCCCCCeEecccchHHHHHHHhhhheeeccCCCCcccHHHHhccccccccchHHhhhcchhhhhHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhcccCC-----CCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhhccCCCCccccc
Q 000772 1203 FSYQVLNVAEVEAISVP-----QSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIK 1277 (1293)
Q Consensus 1203 F~yhil~v~~~d~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~~~~~~d~~~~~~~~~~~~~~~~~ 1277 (1293)
||||||||+++|++|+. ++.++|+.|++|++||+||||||+|||||||+|++|||++|+.||+|||||+||||||
T Consensus 1139 F~yhiL~V~e~d~~~~~~~~~~~~~k~~~~~~~l~~~~e~~rr~r~LNnqVFs~L~~~~~~~d~~~~~~k~~g~~~~~~~ 1218 (1232)
T PLN03099 1139 FIYHVLSVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCPLEDKLASMIKQSGAPVHRVK 1218 (1232)
T ss_pred HHHHHHHHHHHhcccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccCCCcceeee
Confidence 99999999999999983 4556689999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCC
Q 000772 1278 FENTVSAFETLPQR 1291 (1293)
Q Consensus 1278 ~~~~~s~~~~~~~~ 1291 (1293)
||||||+|+||||+
T Consensus 1219 ~~~t~s~~~~lp~~ 1232 (1232)
T PLN03099 1219 YPNTPSAFETLPQK 1232 (1232)
T ss_pred cCCChHHHhccCCC
Confidence 99999999999986
No 2
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=100.00 E-value=0 Score=3310.21 Aligned_cols=1217 Identities=30% Similarity=0.529 Sum_probs=1163.3
Q ss_pred CccCHHHH---HhhcccCCCCCCCccccCCcceEeeccCCCCCCCccccccchhhcch---hHHHHHHHHHHHHHHHHHH
Q 000772 2 AAVPVEEA---IAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLS---EDTKALNQLNTLIQEGKEM 75 (1293)
Q Consensus 2 ~~v~~~~a---v~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~tnf~Dr~a~~t~~~---eE~e~~~~ln~vLeeg~~~ 75 (1293)
++|||.|| |.+|+++.+|||+||||+.+.+|.|. .+|+++|+++.||||||+ ||+++|+++|++|+||.++
T Consensus 3 ~~vt~~daisnv~~ldtl~~pdd~p~iea~~~~l~y~---~~f~~~fq~~~afvtgiaky~eeat~ha~~n~ml~eg~~h 79 (1253)
T KOG3534|consen 3 ANVTVDDAISNVNLLDTLAIPDDLPDIEARALPLLYR---NKFKNYFQIKLAFVTGIAKYSEEATRHAQFNDMLSEGLQH 79 (1253)
T ss_pred CceeHHhhhcchhhhhhccCcccccchhhcccccccC---CchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57999999 79999999999999999999999994 689999999999999997 9999999999999999999
Q ss_pred HHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhcCCCchHHHH
Q 000772 76 ASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLW 155 (1293)
Q Consensus 76 l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~FyeFs~~a~~~l~~~l~~l~h~E~~q~l~se~~L~ 155 (1293)
+.++|||||||||||+++||+|||++||||++++||.|+|.||-+||+||++++++||++++++||.|+|++++|++|++
T Consensus 80 a~~~ytwrccsraip~~ksn~qpnr~ei~e~~vevl~pev~kl~~fmyfqrkaie~f~~ev~rlch~ekr~dfVseayll 159 (1253)
T KOG3534|consen 80 AANMYTWRCCSRAVPMAKSNDQPNRTEINEMVVEVLKPEVSKLGSFMYFQRKAIERFCEEVKRLCHAEKRKDFVSEAYLL 159 (1253)
T ss_pred HHHHHHHhhhhccCCccccCCCCccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCcchhHHhhhHhhhhhccCCchhHHHHhhhhhhhhcchhhHHHHHHHHHHHhccccCC
Q 000772 156 SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTE 235 (1293)
Q Consensus 156 ~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~sr~~~~~~d~~~v~~E~~~LSlFlA~~~pil~~L~~~~~~i~k~l~~ 235 (1293)
++|++++||+++|+|||||+|+.||||+|||+-..+ +.|.|.++++ |++|+|||||++|.|.++|+..+..|.
T Consensus 160 tlg~finmfavldElknmK~svknd~st~rra~qfl-~~msd~~a~~-~~qnlSmfla~~nki~~~l~~~l~~I~----- 232 (1253)
T KOG3534|consen 160 TLGKFINMFAVLDELKNMKASVKNDFSTYRRAAQFL-TAMSDTQAVQ-ESQNLSMFLATQNKIKDDLKLQLETIE----- 232 (1253)
T ss_pred HHHHHHHHHHHHhHHHHhHHHhhhhHHHHHHHHHHH-HHhccHHHHH-HHhhHHHHHHHhcchhhHHHHHHHhhc-----
Confidence 999999999999999999999999999999995544 4456788887 999999999999999999999999988
Q ss_pred cchHHHHHHHHHHHHHhhhcccccCCccchhhheeeceeeeeecCCCCchhhHH-----hHhchhHHHhhhhcCCccccC
Q 000772 236 NSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLY-----KRVKINRLINIFKSDPVIPAF 310 (1293)
Q Consensus 236 ~~~ed~L~t~anvC~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~-----Kri~l~~~~kifK~~pVVPl~ 310 (1293)
||||+|++++|+|++|+|+++|++|+||||+++||+|+++|||+ +.+||+ |||+|+|||||||+++|||||
T Consensus 233 -GYEeLL~DvVNiCv~~yE~kmYLtP~EKHMlvKVmgFgLfLMDg---da~Ni~KLDqKKri~lsriDk~FK~LeVVPLf 308 (1253)
T KOG3534|consen 233 -GYEELLCDVVNICVHMYEHKMYLTPNEKHMLVKVMGFGLFLMDG---DAANIAKLDQKKRISLSRIDKIFKTLEVVPLF 308 (1253)
T ss_pred -CHHHHHHHHHHHHHHHHhheeecCcchhhhhHHhhhheeeeecC---chhhHhhhhhhhccCHHHHHHHHhheeeeecc
Confidence 99999999999999999999999999999999999999999998 577887 699999999999999999999
Q ss_pred CCcccCHHHHHhhhchhhhhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhc
Q 000772 311 PDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKS 390 (1293)
Q Consensus 311 gDm~i~~~~~~k~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~ 390 (1293)
|||||.|++|||+++||. .|+||+. .....+|||||++||++||+||.+|+++||+++||++++..
T Consensus 309 GDMQI~~~~yik~S~Hye-----~SkW~~s---------~s~s~spq~ni~e~~~qIR~DH~~yiselArysNEV~t~~~ 374 (1253)
T KOG3534|consen 309 GDMQIEPFRYIKRSAHYE-----ESKWPLS---------SSESISPQYNICEQMQQIREDHERYISELARYSNEVVTGSG 374 (1253)
T ss_pred CccchhHHHHhhhhcccC-----cccCCCc---------CcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCeeeecCC
Confidence 999999999999999885 2467654 12234899999999999999999999999999999888755
Q ss_pred CCCcchhhhHhhhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHH
Q 000772 391 TDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKAL 470 (1293)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~al 470 (1293)
..+.|.+ +++++|+||+||||||.|+++|+|.|||||+||| |+. +|+|||++||+||||||||||+|||+|+
T Consensus 375 ~~~sDaE-----~R~~~dLAL~GlQLLsqWs~~V~E~ySWKLlhPT-d~~--~NkeCP~~AEEYERATRYNYtseEKfAl 446 (1253)
T KOG3534|consen 375 EQKSDAE-----NRELFDLALRGLQLLSQWSAHVMEVYSWKLLHPT-DKK--DNKECPENAEEYERATRYNYTSEEKFAL 446 (1253)
T ss_pred CCCCcHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCC-Ccc--ccccCCccHHHHHHHHhcCCChHHHHHH
Confidence 4555654 6799999999999999999999999999999999 787 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHhhhhcCCCCCchh
Q 000772 471 VELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSR-ILSDMRTLSADWMANNSRPEAE 549 (1293)
Q Consensus 471 veiIamIK~l~~lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~-il~~iR~~~~DW~~g~~~~~~~ 549 (1293)
||+||||||||++|.|+|++++++||++||+++|||+|.+|++|||+|+||||++++ ||++||++++||..|.+|++++
T Consensus 447 ievIAMIKGLQvlmgr~Esv~~~aiR~~vY~~LQdF~q~tlrEPLrkAvk~KKdll~Silqsvr~ti~Dwe~G~Ep~~dp 526 (1253)
T KOG3534|consen 447 IEVIAMIKGLQVLMGRMESVFNNAIRKTVYAELQDFIQVTLREPLRKAVKKKKDLLASILQSVRKTICDWEKGNEPNNDP 526 (1253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999876 9999999999999999999999
Q ss_pred hhhccccCCCCCC---ccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhH
Q 000772 550 QQSMHHVGEESRG---NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFL 626 (1293)
Q Consensus 550 ~~~~~k~~~~~~~---~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~ 626 (1293)
. .||+++|+| |++|+|+||||||||||+|+|++++++.+ .|| .+.+|+++|+..+..|+.||++||||+
T Consensus 527 ~---~kGkKdPkggfdIkvPRr~vgPsSTQLYMvRTmLESLIaDK----sG~-KktLRk~ldg~~il~I~~Fhr~Sf~~~ 598 (1253)
T KOG3534|consen 527 D---LKGKKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADK----SGG-KKTLRKSLDGPTILKIEVFHRKSFFWT 598 (1253)
T ss_pred c---ccCCcCCCCCcceeccccccCCCcchHHHHHHHHHHHhhcc----cCc-hhhhhhhcCCchhhhHHHHHHhhhHHH
Confidence 8 566667664 99999999999999999988887777532 211 123799999999999999999999999
Q ss_pred hhhChHHHHHhhccccchhhhhhhhcc--CCeeeccCcCcchHHHHHHHhhcCCcchhhhhcccccccchHHHHHHHHHh
Q 000772 627 HILDYTATVSTLTDLGFLWFREFYLES--SRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLK 704 (1293)
Q Consensus 627 ~LLn~s~tL~~~~DLS~LWfREfyLEl--~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdLYNDAA~~AL~~lk 704 (1293)
||||||+||++|||||||||||||||| |+|||||||||||||||||||++++|||||+++||||||||||+|||++|+
T Consensus 599 ~L~n~SdtlqqccdLSQLWfREFyLEmTMGrRIQFPIEMSMPWILTDhIL~tkEpSmmE~vLY~LDLYNDsA~YaLt~F~ 678 (1253)
T KOG3534|consen 599 HLLNFSDTLQQCCDLSQLWFREFYLEMTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTNFN 678 (1253)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhhccceecchhccCchhhhhhHHhcCChhHHHHhhcchhcccchHHHHHHHHH
Confidence 999999999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccCcccccccc-CCCCcccCC-hhHHHHhhcccceecccccc
Q 000772 705 QRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD-NGEKYSVQP-MRLSALFKMTRVKLLGRSIN 782 (1293)
Q Consensus 705 ~qfLYDEIEAEvnLCFDqlv~kLSd~iF~~yK~~Aas~lLd~~f~~~~~-~~~~~~~~~-~Ry~~LL~QrhvqLLGRsID 782 (1293)
||||||||||||||||||||||||||||+|||++|+|++|||||+++|. .|..+++|| +||+|||+||||||||||||
T Consensus 679 KQFLYDEvEAEVNLCFDQFVYKLseqiFa~YK~lAgs~lLDKRfraEc~~~G~~i~~P~~nRyEtLLkQRHVQLLGRSiD 758 (1253)
T KOG3534|consen 679 KQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAGSMLLDKRFRAECKNSGTMIRYPPSNRYETLLKQRHVQLLGRSID 758 (1253)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCeeeeCCCchhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999 489998877 99999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCCCCCcchHHHH
Q 000772 783 LRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLAS 862 (1293)
Q Consensus 783 L~~LItQRln~~~~~~l~~ai~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~ 862 (1293)
||+|||||+|++|.++||.||+||||.||||||||++|||+||+||+|||++|+|||||+|++||||||+ |||||||+
T Consensus 759 LNrlitQRvnaam~Ksld~AI~rFEsedltsIVELd~Lle~NRl~H~LLs~~l~ld~FD~mf~EANHnV~--aPyGRITL 836 (1253)
T KOG3534|consen 759 LNRLITQRVNAAMYKSLDLAISRFESEDLTSIVELDGLLEINRLCHKLLSKYLTLDPFDAMFREANHNVS--APYGRITL 836 (1253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHhHHHHHHHHHHHHHHHhccCchHHHHHHhccccC--CCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 99999999
Q ss_pred HHHHHHhhcccccccccccCcccccCCCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHh
Q 000772 863 QIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLL 942 (1293)
Q Consensus 863 hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLL 942 (1293)
||||||+|||+||||||++||||||+.++|++.++|++||++.|+|+||||+||+||++|++.|++|+|.|||+||||||
T Consensus 837 HVFwELNyDFlpNycYNgsTnRFvRt~~~fsq~~qReKppq~~~~Yl~GSK~Ln~Ays~iy~~Y~~fvG~pHf~aicRLL 916 (1253)
T KOG3534|consen 837 HVFWELNYDFLPNYCYNGSTNRFVRTRHPFSQEPQREKPPQVQPYYLWGSKSLNAAYSNIYGSYRNFVGPPHFKAICRLL 916 (1253)
T ss_pred EEeeeeccccchhhhccCccchhhhhcccccccccccCCCCCCceEEecchHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhcccc-ccchHHHHHHHHHHHh
Q 000772 943 GSRSLPWLIRALLDHMSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGT-KSELKAEVLHGIKEIG 1020 (1293)
Q Consensus 943 g~~gia~vi~ell~~~~~~i~~-~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~-~~dlk~~v~~~frElG 1020 (1293)
||||||+|++||||++++++|+ +.+||++|++.|||+|+|||.+|||+|+++||+|||++|+ |+||||++||+|||+|
T Consensus 917 gYQGIAVvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~G 996 (1253)
T KOG3534|consen 917 GYQGIAVVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVG 996 (1253)
T ss_pred cccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999997 9999999999999999999999999999999999999987 7899999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHhhccccCCCCCC---CCccc----ccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhh
Q 000772 1021 SVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGA---DGQIS----YHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFH 1093 (1293)
Q Consensus 1021 N~i~~~~lle~aL~q~e~~d~~~aaPf~gi~P~~---~~~~~----~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~ 1093 (1293)
|+|+||++|||||+|||+||++||||||||+|++ +||++ ++++.||+|++ .+.+++++|+++ |
T Consensus 997 N~I~FClliEqaLsqEEvcDLlhAA~fqni~Pr~~~ke~e~~~~k~krLE~kya~lh------lv~~iekigt~~---Q- 1066 (1253)
T KOG3534|consen 997 NAILFCLLIEQALSQEEVCDLLHAAPFQNILPRPPAKEGERLEAKMKRLEAKYAPLH------LVPLIEKIGTPQ---Q- 1066 (1253)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHhhhhccCCCCCccccchhHHHHHHHHHhhcCcee------ehhHHHHcCChH---H-
Confidence 9999999999999999999999999999999995 46655 88999999998 888999999765 4
Q ss_pred hhhHhhhHHhhhhhhccccc-cHHHHHHHHHHHHHcccCCccccCCC-CCeeeecccchHhhhhhhhhceecccCCCCCC
Q 000772 1094 TMSKQAEAADLLYKANMNTG-SVLEYALAFTSAALDKYCSKWSATPK-TGFIDITTSKDFYRIYSGLQIGYLEESSQSPS 1171 (1293)
Q Consensus 1094 ~~~~~a~~~d~l~~~~l~~g-s~f~~~L~~~~~~L~~~~~~W~g~p~-ngv~~id~~~ef~RlwSalqf~~c~p~~~~e~ 1171 (1293)
+++||||||||||||||| |+||++|+||+++|++ ++|.|||| |||||||||+||||||||+|||||+|++.+|+
T Consensus 1067 --~aIAregdLlTkERLCCGLs~FEviL~Riks~L~D--piW~Gp~PtNGv~hvDECvEfhRlwSAlQFvyCiPv~~~E~ 1142 (1253)
T KOG3534|consen 1067 --AAIAREGDLLTKERLCCGLSMFEVILTRIKSYLDD--PIWRGPPPTNGVMHVDECVEFHRLWSALQFVYCIPVRTNEF 1142 (1253)
T ss_pred --hHHhhhhhhhhhhhhhccHHHHHHHHHHHHHHhcC--ccccCCCCCCCeeeHHHHHHHHHHHHHhheEEEEecCCCee
Confidence 569999999999999999 9999999999999998 99999855 99999999999999999999999999999999
Q ss_pred CcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhcccCCCCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHH
Q 000772 1172 NNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSM 1251 (1293)
Q Consensus 1172 ~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~ 1251 (1293)
|.||+|||||+||||+||+|||||||||+||||||+||||++||||++ ++||+|++||+||||||+||||||+|
T Consensus 1143 t~Ee~FGdgL~WaGc~iIvLLGQqRRFevlDFCYHllrVqk~DGKDEi------ik~i~LkkMveRIRrfQiLNnqif~I 1216 (1253)
T KOG3534|consen 1143 TAEELFGDGLNWAGCTIIVLLGQQRRFEVLDFCYHLLRVQKADGKDEI------IKGIPLKKMVERIRRFQILNNQIFII 1216 (1253)
T ss_pred eHHHHhCCccccccceeeeeecchhhhHHHHHHHHHHHHhhccCchhh------hcCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999997 67899999999999999999999999
Q ss_pred HhhcCCCCcchhhhhccCCCCccccc---CCCchhhhhhcCCC
Q 000772 1252 LKARCPLEDKTACAIKQSGAPLHRIK---FENTVSAFETLPQR 1291 (1293)
Q Consensus 1252 L~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~ 1291 (1293)
|++|+...|+. |+|||||| ||+|||++++..++
T Consensus 1217 L~kylk~ge~~-------~~~vEhVRcF~PPiH~s~as~~a~~ 1252 (1253)
T KOG3534|consen 1217 LNKYLKSGEGE-------GSPVEHVRCFQPPIHPSLASSAARR 1252 (1253)
T ss_pred HHHHhccCCCC-------CCchhheeccCCCCChhhhhhhhcc
Confidence 99999999999 99999999 99999999998754
No 3
>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family. Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.
Probab=100.00 E-value=2.8e-246 Score=2220.27 Aligned_cols=804 Identities=42% Similarity=0.690 Sum_probs=630.2
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 000772 403 KGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS 482 (1293)
Q Consensus 403 ~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~~ 482 (1293)
++++|++|++||||||+||++|+||+||||+||++++..+.|++||+++++||||||||||++||+||||+|||||||++
T Consensus 3 n~~~~~~~l~glqlLS~wt~~I~E~~awKl~~P~~~~~~~~n~~~p~~~~~YEravRyNYs~eE~~alveiIamIKsl~~ 82 (820)
T PF05994_consen 3 NRELYDLALRGLQLLSRWTSRILEQYAWKLLHPTDDPPASQNKECPEDAEEYERAVRYNYSSEEKFALVEIIAMIKSLQS 82 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TT---T-TT--TTS-HHHHHTGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccCCcchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999997664567889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCC
Q 000772 483 MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESR 561 (1293)
Q Consensus 483 lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~-~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~ 561 (1293)
+|.++|++++++||++||+++|||||++|++|||+|+||||+ +.+||++||++|+||++|.+|+++++.++ ++++
T Consensus 83 ll~~~e~~~~~~i~~~I~~~~Q~Fvq~~L~~~l~~a~KkKK~~~~~iL~~iR~~~~Dw~~~~~p~~~~~~~~---~k~~- 158 (820)
T PF05994_consen 83 LLQRMEPVLAEAIRRHIYAELQDFVQNTLREPLRHAQKKKKDLISSILSSIRTTCADWMNGMEPPDDPKKKG---KKDP- 158 (820)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTT-HHHHHHHHHHHHHH---SSSS--TT-HHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcccccCCCCCCchhhcc---cCCC-
Confidence 999999999999999999999999999999999999995555 66799999999999999998888876333 2232
Q ss_pred CccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHHHhhccc
Q 000772 562 GNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDL 641 (1293)
Q Consensus 562 ~~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL~~~~DL 641 (1293)
..+|+.++|||+|+|+++++++++..+++|+| +|++++++++++|++||++|+||+|||||++||++||||
T Consensus 159 -------~~~~~i~~l~~lRt~le~li~~~~~~~k~g~~--~~~~l~~~~~~~i~~F~~~s~~~~~LL~~~~tl~~~~Dl 229 (820)
T PF05994_consen 159 -------KSGPSIQVLYMLRTMLESLISEKSGGKKGGLF--SRKDLDSKDLDQIEEFLNKSFFFPHLLNFSETLRQCCDL 229 (820)
T ss_dssp ---------------HHHHHHHHHHHH--------------TTTTS-HHHHHHHHHHHHHGGGHHHHHTHHHHHHHHS--
T ss_pred -------CCCCCcchHHHHHHHHHHHhCCcccccccccc--ccccCCHhHHHHHHHHHHHhcchHHHhCCHHHHHHhccH
Confidence 23455555999999999999998777778888 589999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccCCeeeccCcCcchHHHHHHHhhcCC-cchhhhhcccccccchHHHHHHHHHhhhhhHHHHHHHHhhHH
Q 000772 642 GFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQN-AGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCF 720 (1293)
Q Consensus 642 S~LWfREfyLEl~~~iQFPIe~SLPWILtdhiL~s~~-~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYDEIEAEvnLCF 720 (1293)
|||||||||||++++||||||||||||||||||++++ |+|+|+||||||||||||++||++||||||||||||||||||
T Consensus 230 s~LWfREfyLEl~~~iQFPIe~SLPwILtdhiL~s~~~~~l~E~ilyPLdlYNDAA~~AL~~lk~q~LyDEIEAEv~lcf 309 (820)
T PF05994_consen 230 SQLWFREFYLELTKRIQFPIEMSLPWILTDHILESKDKPSLMEYILYPLDLYNDAAHYALKKLKSQFLYDEIEAEVNLCF 309 (820)
T ss_dssp GGGS--HHHHHHTS-SS--GGG-HHHHHHHHHHHHT--GGGTTTHHHHHTHHHHHHHHHHHTS-BHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhhcccceeecCccCCccHHHHHHHHhcCCcchhHHHHhhhHHHhhHHHHHHHHHHHHhhhHHHHHHHhChhH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccccccccC-CCCc-ccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHH
Q 000772 721 DIFVSRLCETIFTYYKSWAASELLDPSFLFSSDN-GEKY-SVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFREN 798 (1293)
Q Consensus 721 Dqlv~kLSd~iF~~yK~~Aas~lLd~~f~~~~~~-~~~~-~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~ 798 (1293)
|||||||||+||+|||++||+++||++|+.+|.+ +... ..|++||++|||||||||||||||||+||+||||++|+++
T Consensus 310 dqlv~~lsd~if~~yK~~Aa~~~ld~~~~~~~~~~~~~~~~~~~~r~~~ll~Qr~v~lLGRsIDL~~Li~QRln~~~~~~ 389 (820)
T PF05994_consen 310 DQLVFKLSDQIFTHYKSLAASMLLDKRFRAELKNSGIAILYPPANRYETLLQQRHVQLLGRSIDLNRLITQRLNALFRKS 389 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTT-----------HHHHT-S-EEETTEEE-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCcccCCCCcchHHHHHhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 4333 4467999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhccccccc
Q 000772 799 LEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDL-SIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFI 877 (1293)
Q Consensus 799 l~~ai~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L-~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~ 877 (1293)
||.||+||||+|||||||||++|+|+|+||+|||+|+ +|||||+||+||||++||+||+|||++||+|||++||+||||
T Consensus 390 le~ai~rfEs~dl~~ivele~ll~i~r~TH~LLse~l~~Ld~Fd~ml~Ean~~vs~~s~~gRI~~hv~~eL~~D~~PNy~ 469 (820)
T PF05994_consen 390 LEFAISRFESSDLTSIVELEHLLDILRLTHRLLSEHLLSLDPFDDMLREANHNVSPVSPYGRITLHVFWELNYDFLPNYC 469 (820)
T ss_dssp HHHHHHHHHTS-GGGHHHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHTT-SS--SSS-HHHHHHHHHHHHTHHHHEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHhccccccccccHHHHHHHHHHhcccccCce
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHH
Q 000772 878 LCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDH 957 (1293)
Q Consensus 878 yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~ 957 (1293)
||++|+| ..++++++|++||+++++++||+|+||+||++++++|++|||+|||+||||||||+|||+|+++|++
T Consensus 470 yn~~T~R-----~~~~~~~~r~k~p~~~~~~~~Gsk~l~~a~~~i~~~~~~FvG~pH~~ai~rLLg~~~la~li~ell~- 543 (820)
T PF05994_consen 470 YNSSTQR-----MVFSEPVQREKPPKAQPSYLFGSKALNAAYQTILSLYRGFVGVPHFKAIVRLLGYRGLAVLIEELLK- 543 (820)
T ss_dssp EETTTTE-----GGG-------------GGGTTSSHHHHHHHHHHGGGGGS-B-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eeCCCCC-----CCCCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHHhCCccChHHHHHHHHHhCCCcHHHHHHHHHH-
Confidence 9999999 5567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhcccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 000772 958 MSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGT-KSELKAEVLHGIKEIGSVLYWMGLLDIVLRE 1035 (1293)
Q Consensus 958 ~~~~i~~-~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~-~~dlk~~v~~~frElGN~i~~~~lle~aL~q 1035 (1293)
+|++ +.|||++++++|||+|++|++|||++|||+||++||++++ |+||| +|||+||||||+++||++||+||+|
T Consensus 544 ---~i~~~~~~~V~~l~~~mPk~~~lP~~dygs~g~~~~y~~~l~~~~~y~dLk-evfq~frEiGN~i~f~~lLd~al~q 619 (820)
T PF05994_consen 544 ---LIQNKIEPYVKALMEAMPKSCKLPPFDYGSAGVYDYYEAQLKDIIQYPDLK-EVFQAFREIGNAIVFCLLLDQALSQ 619 (820)
T ss_dssp ---HHHTHHHHHHHHHHHHS-SB-----GGG-HHHHHHHHHHHTHHHHS-TTTT-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhCCccccCCCccCCCHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6665 8999999999999999999999999999999999999965 88999 9999999999999999999999999
Q ss_pred hhhHHHHhhccccCCCCCCCCcccccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhhhHHhhhhhhccccc-c
Q 000772 1036 VDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-S 1114 (1293)
Q Consensus 1036 ~e~~d~~~aaPf~gi~P~~~~~~~~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a~~~d~l~~~~l~~g-s 1114 (1293)
+|++|++|||||+|++|+++..+...++.+..+..+.+++. ... +.....-||+|||+|+||| |
T Consensus 620 ~e~~~~~~aapf~~~~p~~~~~~~~~~~~~~~~~~~~l~~~-------~~~--------l~~~~~~~dll~k~~l~~~~s 684 (820)
T PF05994_consen 620 EEVCDLLQAAPFQGIIPRPYVKEGEEQETKFDPTFKRLESK-------FAS--------LQVVPGVADLLTKERLCCGLS 684 (820)
T ss_dssp HHHHHHHHHGGGGT--------TT--HHHH----HHHHHHH-------TGG--------G-HHHHHHHHHHH--GGGTEE
T ss_pred HHHHHHHHHhhhcCCCCCccccccchhhhHHHHHHHHHHHH-------HHH--------hhccchHHhhhcHHHHhhHHH
Confidence 99999999999999999976221111222223333222221 111 0111122899999999998 9
Q ss_pred HHHHHHHHHHHHHcccCCccccC-CCCCeeeecccchHhhhhhhhhceecccCC-CCCCCcccccCCcccchHHHHHHHh
Q 000772 1115 VLEYALAFTSAALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESS-QSPSNNHKVLGDSVAWGGCTIIYLL 1192 (1293)
Q Consensus 1115 ~f~~~L~~~~~~L~~~~~~W~g~-p~ngv~~id~~~ef~RlwSalqf~~c~p~~-~~e~~~~e~fGdgl~waGc~ii~LL 1192 (1293)
+||++|++++++|++ |+|+ |+||||+||+|+|||||||||||+||+|+. .++.+++|+||||++|||||||+||
T Consensus 685 lf~~~L~~~~~~L~~----w~g~~p~ngv~~i~~~~eF~RlWSaLQFv~C~p~~~~~~~~~~e~fGDGl~waGctiI~LL 760 (820)
T PF05994_consen 685 LFEYVLARIKSFLES----WSGAPPSNGVMDIDECKEFHRLWSALQFVFCIPEANENEDSVEELFGDGLQWAGCTIIYLL 760 (820)
T ss_dssp SHHHHHHHHHTT--S----TT-S--TTSS--SSB--SHHHHHHHHHHHHHS----TTS--HHHHHBTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh----ccCCCCCCCceecccccHHHHHHHHHHHHHhCCcccCCCcchHHHhcchhhHHHHHHHHHh
Confidence 999999999999997 8886 669999999999999999999999999998 6789999999999999999999999
Q ss_pred ccccccccccchhhhhhhhh----hhcccCCCCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhh
Q 000772 1193 GQQLHFELFDFSYQVLNVAE----VEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKA 1254 (1293)
Q Consensus 1193 gQq~rFe~lDF~yhil~v~~----~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~ 1254 (1293)
|||+|||+||||||||||++ +|++|+. +.|+++++||+||||||+||+|||++|+|
T Consensus 761 gQq~~Fe~ldf~yhil~v~~~e~~~~~~d~~------~~~~~l~~~v~~i~~~~~Ln~qiF~~l~~ 820 (820)
T PF05994_consen 761 GQQRRFEALDFSYHILRVQEVEFAVDGKDEL------IKGVSLKRMVERIRRFQRLNNQIFSILNK 820 (820)
T ss_dssp T-HHHHHHH-HHHHHHHHHH----HH----E------ETTEEHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHhHHHHHHHHHhhhhhhhcchhh------ccCCCHHHHHHHHHHHHHHhcCCcccCCC
Confidence 99999999999999999999 7887764 56799999999999999999999999986
No 4
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=100.00 E-value=9.9e-64 Score=556.19 Aligned_cols=277 Identities=18% Similarity=0.291 Sum_probs=241.3
Q ss_pred CCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHH
Q 000772 41 SPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLRE 120 (1293)
Q Consensus 41 ~~tnf~Dr~a~~t~~~eE~e~~~~ln~vLeeg~~~l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~ 120 (1293)
+-++||+.. --.+|+++|+++++||++|+++|++||+|||||++||+||++ ||+.|+||+||+||+|+|+|||+
T Consensus 3 ~flDfena~----Pt~~E~ev~~~v~~VL~~~~~iL~~L~~Yrgas~~Ir~Ai~~--Ps~ee~qe~aw~al~P~V~kLk~ 76 (303)
T PF07159_consen 3 IFLDFENAQ----PTEEEREVYNEVNEVLEEGEQILQDLYTYRGASREIRQAISN--PSDEELQEKAWEALEPLVKKLKE 76 (303)
T ss_pred cceecCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHcC--CChHHHHHHHHHHHhhHHHHHHH
Confidence 334566432 235899999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccch--hcCCCchHHHH-HHHHHHHHHHhhccccccCCCCCcchhHHhhhHhhhh-hccC
Q 000772 121 IQRWQASAASKLAADMQRFSRPER--RINGPTITHLW-SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVS-VQWQ 196 (1293)
Q Consensus 121 FyeFs~~a~~~l~~~l~~l~h~E~--~q~l~se~~L~-~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~sr~~-~~~~ 196 (1293)
||+||.++++.|++.|..||+.+. ++.+...++|. |||+||||+++||+|||+||+||||||||||+++|++ .+.+
T Consensus 77 Fy~Fs~~le~~~~~ll~~L~~~~~~~~~~l~~~qAL~kq~a~iL~f~l~fD~LK~~npaIqNDFSyYRRa~sr~k~~~~~ 156 (303)
T PF07159_consen 77 FYEFSQELEKVFPKLLKELCSGPLKPKEHLEQKQALAKQFAEILDFVLKFDELKMMNPAIQNDFSYYRRALSRMKMNNMQ 156 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhccChhhhccHHHHHHHHHHHhhcccc
Confidence 999999999999999999998643 45577666666 9999999999999999999999999999999999987 3333
Q ss_pred C-chhHHHHhhh-hhhhhcchhhHHHHHHHHHHH---hccccCCcchHHHHHHHHHHHHHhhhcccccC----Cccchhh
Q 000772 197 D-TDSMREELDD-LQIFLSTRWAILLNLHVEMFR---VNKSLTENSVEDILQVLIVFAVESLELDFALL----FPERHIL 267 (1293)
Q Consensus 197 d-~~~v~~E~~~-LSlFlA~~~pil~~L~~~~~~---i~k~l~~~~~ed~L~t~anvC~~mlE~~~y~~----p~ek~~l 267 (1293)
+ +..+++|++| ||||||+++||+++|++++.+ .++++|+||++|+|+||||+|++|+|+++|.+ +++++||
T Consensus 157 ~~~~~v~~elaN~mSlF~A~~tPmlk~L~~at~~~v~~~~~l~i~n~~d~L~t~a~vC~~mle~~~~~sr~~~~et~~f~ 236 (303)
T PF07159_consen 157 EEENEVSDELANRMSLFYAEATPMLKTLSEATTKFVSENKDLPIENTTDVLSTMANVCRVMLENPEYRSRFQSEETVLFC 236 (303)
T ss_pred ccchhhhHHHhhccceeeeeCCcHHHHHHHHHHHHHHcCccCCcccHHHHHHHHHHHHHHHHcCccccccCCCccceeeE
Confidence 3 3567888766 999999999999999999954 56779999999999999999999999999988 6789999
Q ss_pred heeeceeeeeecCCCCchhhHH-hHhchhHHHhhhhcCCccccCCCcccCHHHHHhhhchhh
Q 000772 268 LRVLPVLVVLATSSEKDSESLY-KRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYF 328 (1293)
Q Consensus 268 LRVM~~~iiL~D~v~~~~~ni~-Kri~l~~~~kifK~~pVVPl~gDm~i~~~~~~k~~~~~~ 328 (1293)
||||||+||||||+++.|++.. ++|++.++.|++|+.|. +-.=.+.+-|+=++-|+
T Consensus 237 lRvM~g~iiLyDhv~~~GaF~k~s~i~ik~~ik~lk~~~~-----~~~~~Lln~lryttkhl 293 (303)
T PF07159_consen 237 LRVMVGAIILYDHVHPVGAFSKKSPIDIKGCIKVLKDQPP-----ESVEGLLNALRYTTKHL 293 (303)
T ss_pred eEhhhceEEEEeccCCCCccccCCCCCHHHHHHHHHhcCc-----hhHHHHHHHHhHhhccC
Confidence 9999999999999999999877 59999999999999885 22334455555555554
No 5
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-56 Score=473.57 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=224.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHH
Q 000772 56 SEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQ---ASAASKL 132 (1293)
Q Consensus 56 ~eE~e~~~~ln~vLeeg~~~l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~FyeFs---~~a~~~l 132 (1293)
.||+++|++.+++|++++.++.++.+|++.+-+++.++.| |++.++++++|.+|+|.|+|+|+||+|+ +++++++
T Consensus 29 ~eerei~n~~~evl~d~~~vl~d~~~y~~~~~~~r~~iq~--~~d~q~~ekaw~av~PlV~r~k~~ye~~~~lek~v~~l 106 (321)
T KOG3951|consen 29 DEEREIYNMAEEVLQDADLVLADVSSYGNGCYAERNAIQN--PADEQLQEKAWGAVVPLVGRTKSYYEHVAKIEKIVPII 106 (321)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhC--CCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999988899999999 8999999999999999999999999999 5777888
Q ss_pred HHHHHh-----hcccchhcCCCchHHHHHHHHHHHHHHhhccccccCCCCCcchhHHhhhHhhhh-hccCCchhHHHHhh
Q 000772 133 AADMQR-----FSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVS-VQWQDTDSMREELD 206 (1293)
Q Consensus 133 ~~~l~~-----l~h~E~~q~l~se~~L~~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~sr~~-~~~~d~~~v~~E~~ 206 (1293)
+++|.+ .+|++++|++++ |||+||+|+++||++||++|+||||||||||+++|+| .+.+.++ +++|++
T Consensus 107 lg~L~~~pl~~~~~l~~~QalaK-----QfAeil~F~LrFDelKM~tpaIqNDfSYYRRt~sr~rv~~~~~~e-v~~ELa 180 (321)
T KOG3951|consen 107 LGSLSSGPLPLEEQLANKQALAK-----QFAEILHFTLRFDELKMRTPAIQNDFSYYRRTLSRMRVYQDPANE-VNNELA 180 (321)
T ss_pred HHhhcCCCCCchHHHHHHHHHHH-----HHHHHHHheehhhhhhccChhhccchHHHHHHHHHHHhccChhhh-ccHHHH
Confidence 888877 688999998888 9999999999999999999999999999999999999 4444444 556977
Q ss_pred h-hhhhhcchhhHHHHHHHHH---HHhccccCCcchHHHHHHHHHHHHHhhhcccccC----Cccchhhheeeceeeeee
Q 000772 207 D-LQIFLSTRWAILLNLHVEM---FRVNKSLTENSVEDILQVLIVFAVESLELDFALL----FPERHILLRVLPVLVVLA 278 (1293)
Q Consensus 207 ~-LSlFlA~~~pil~~L~~~~---~~i~k~l~~~~~ed~L~t~anvC~~mlE~~~y~~----p~ek~~lLRVM~~~iiL~ 278 (1293)
| ||||||++|||+|+|++++ +..||++|++|++|||+||+++|+.|+|||+|++ +++||+|+|||||+||||
T Consensus 181 nrmslFyaeatPMLKtLs~at~kfvsenk~lpIeNTTd~l~TmasVCr~MLenpe~~sr~t~eet~~~clrvmvGlvILy 260 (321)
T KOG3951|consen 181 NRMSLFYAEATPMLKTLSNATTKFVSENKNLPIENTTDCLSTMASVCRVMLENPEYLSRFTNEETKMLCLRVMVGLVILY 260 (321)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHhccCCCCccchhHHHHHHHHHHHHHhcCHHHHHHhcchhhhhhhhhhhcceEEee
Confidence 5 9999999999999999999 5689999999999999999999999999999966 899999999999999999
Q ss_pred cCCCCchhhHH-hHhchhHHHhhhhcCC
Q 000772 279 TSSEKDSESLY-KRVKINRLINIFKSDP 305 (1293)
Q Consensus 279 D~v~~~~~ni~-Kri~l~~~~kifK~~p 305 (1293)
|||+++|+++. .+|++..+.|.+|..|
T Consensus 261 DHVhp~GAFv~~s~iDmkgcvrllk~q~ 288 (321)
T KOG3951|consen 261 DHVHPNGAFVSNSSIDMKGCVRLLKLQP 288 (321)
T ss_pred ecccccccccccCcCcHHHHHHHHHcCC
Confidence 99999999988 7999999999999888
No 6
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=98.89 E-value=1.4e-05 Score=98.69 Aligned_cols=514 Identities=15% Similarity=0.185 Sum_probs=283.6
Q ss_pred ccccCCcceEeeccCCCCCCCcccccc----chhh-cchhHHHHHHHHHHHHHHHH-HHHHHHhhccccccccCCCCCCC
Q 000772 23 PEVQGPSVLVSTERGATASPIEYSDVN----AYRL-SLSEDTKALNQLNTLIQEGK-EMASVLYTYRSCVKALPQLPNSM 96 (1293)
Q Consensus 23 P~ie~~~~~l~y~~~~~~~~tnf~Dr~----a~~t-~~~eE~e~~~~ln~vLeeg~-~~l~~LytYRscsraIpqaisn~ 96 (1293)
=+.-..|++|.|.++ -+++..|-- .+.. -++-=+...++++.+-+||+ .+...|+.|.-- +. .+
T Consensus 26 w~~~~~pv~l~~~~~---e~~~l~~li~t~n~~~~Kvl~~la~lc~Ei~~L~~ea~~~f~~~l~~~ge~---~~----~~ 95 (567)
T PF14745_consen 26 WDFHLDPVSLQLGPY---EQISLSDLIKTDNKLLNKVLAVLASLCNEIRKLKEEAETKFYPPLLFYGER---ID----EE 95 (567)
T ss_pred ccCCCCceEEecCch---hhccHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CC----cc
Confidence 345567889988532 222222211 0000 11233456667888889999 899999998422 22 22
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhc-C----CCchHHHH-HHHHHHHHHHhhccc
Q 000772 97 KHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRI-N----GPTITHLW-SMLKLLDVLVQLDHL 170 (1293)
Q Consensus 97 qpn~~eiye~t~~vL~PeV~KLk~FyeFs~~a~~~l~~~l~~l~h~E~~q-~----l~se~~L~-~La~iLdf~l~lD~L 170 (1293)
.....|.+..... ..|....|-.|..=...++..+...|..+...++.. . .+.-..++ .||++|-.++.+|++
T Consensus 96 ~~~~ge~~~~i~~-~l~~lq~l~~~~~R~~~Vv~n~v~QLaaly~~~~~~~~~~~~~v~l~~vf~~lg~lL~vlvtlDeI 174 (567)
T PF14745_consen 96 SLPEGEAQIMIGR-MLPFLQDLSCFVNRCREVVKNLVQQLAALYSSQKAPKPIDFKGVHLQTVFDHLGELLRVLVTLDEI 174 (567)
T ss_pred CCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2223455556666 778888888888877778888787888876664211 1 23334445 999999999999999
Q ss_pred cccCCCCCcchhHHhhhHhhhhhccCCc-hhHHHHhhhhhhhhcc------hhhHHHHHHHHHHHhccccCCcchHHHHH
Q 000772 171 KNAKASIPNDFSWYKRTFTQVSVQWQDT-DSMREELDDLQIFLST------RWAILLNLHVEMFRVNKSLTENSVEDILQ 243 (1293)
Q Consensus 171 K~~k~sIqNDFS~YRRa~sr~~~~~~d~-~~v~~E~~~LSlFlA~------~~pil~~L~~~~~~i~k~l~~~~~ed~L~ 243 (1293)
=..|+++.+.++.|||.+..++.+ |+. ....+++..+.-.++. ...+.+++.+.....++.+++++-.....
T Consensus 175 i~~n~~L~~~w~~ykr~l~~v~~n-p~~f~~~~~~l~~le~ll~~le~~ll~g~iF~~~~eq~fd~~~~~~v~~n~~l~e 253 (567)
T PF14745_consen 175 IEQNPSLRDHWSLYKRMLKSVRHN-PSKFGVTEEKLRQLEKLLADLEGQLLDGNIFQRCLEQLFDDKGQVSVSKNKRLSE 253 (567)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcC-hhhcCCCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhcccccceeccccHHHHH
Confidence 999999999999999999888754 221 1111122222222211 12233344444433333333333332222
Q ss_pred ----HHHHHHHHhhhc-ccccCCccchhhheeeceeeeeecCCCCchhhHHhHhchhHHHhhhhcCCccccCCCcccCHH
Q 000772 244 ----VLIVFAVESLEL-DFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPA 318 (1293)
Q Consensus 244 ----t~anvC~~mlE~-~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~Kri~l~~~~kifK~~pVVPl~gDm~i~~~ 318 (1293)
.+-+.+...-.+ .....-+++..++++.+..++.+=...+ .-||+ +.++-.+.|..|+||++|..-..|.
T Consensus 254 ef~~~l~~~~~~~e~~l~~~~e~~~r~~~igl~~L~vl~~~Lf~~----~Dkkl-~K~vwe~~kk~P~v~l~g~v~w~P~ 328 (567)
T PF14745_consen 254 EFAAYLKELLEELEAKLGEPKELDDRKDFIGLCGLYVLHYHLFPS----VDKKL-FKRVWEVQKKVPAVPLYGNVIWFPD 328 (567)
T ss_pred HHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHHHHccc----cchHH-HHHHHHHhcCCceEEEeccEEechH
Confidence 222222222222 1111235666788876654444321111 11333 4667888899999999999999999
Q ss_pred HHHhhhchhhhhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhh
Q 000772 319 AILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEW 398 (1293)
Q Consensus 319 ~~~k~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~ 398 (1293)
.|+.+..|.-. +...-|++. ........| +-..-.++-.+=..|..+.+.=+.++.-..... .
T Consensus 329 ~FL~~~~p~~~------k~~d~k~~~-----~~~~~r~~~-l~~~~~~~~~~v~~~~~~vs~W~v~m~s~~~~~-----~ 391 (567)
T PF14745_consen 329 DFLRRHLPKEI------KFLDKKSIE-----AVKQARRAY-LQQRDQSFPKDVQQLYLQVSSWMVEMESILRPQ-----S 391 (567)
T ss_pred HHHHHhCcHHh------hhcccchhH-----HHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCcc-----c
Confidence 99998766531 111101100 000000011 112222233333344444443333333322111 1
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHH
Q 000772 399 CKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIK 478 (1293)
Q Consensus 399 ~~~~~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK 478 (1293)
..+.-.....+.++|+.+..+-+..|.....=... - +. |. |...-.++...|-|+|
T Consensus 392 ~~~~L~~~~~LllqGv~lA~~i~~lv~t~i~LH~~--l-~~--pm-------------------tk~~v~~l~rlvElLK 447 (567)
T PF14745_consen 392 FEEDLQSRCNLLLQGVRLAYQISHLVKTLINLHMS--L-EK--PM-------------------TKSTVRALCRLVELLK 447 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c-cC--CC-------------------CHHHHHHHHHHHHHHH
Confidence 12223366789999999999999888887754432 1 11 12 4467888999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--hhHHHHHHHHHHHHhhhhcCCCCCchhhhhccc
Q 000772 479 NIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTF-RKK--KDLSRILSDMRTLSADWMANNSRPEAEQQSMHH 555 (1293)
Q Consensus 479 ~l~~lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~-KkK--k~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k 555 (1293)
+++....+..+++++.+...++ .+|.-+...|...-.+-. +|| +...++++.+.-.- + ..+
T Consensus 448 aI~~tf~~~~~~ia~~~~~i~Q-~l~~~i~~~L~~~kk~l~~~kk~s~~~ld~lsal~lae-~--------------~L~ 511 (567)
T PF14745_consen 448 AIQHTFHRRSMVIAESISHIVQ-HLQYKILRLLETAKKRLVSDKKYSERKLDVLSALQLAE-R--------------LLN 511 (567)
T ss_pred HHHHHHHHccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-H--------------Hhc
Confidence 9999999999999886554332 233333334443222222 122 11123443333111 0 111
Q ss_pred cCCCCCCccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHH
Q 000772 556 VGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATV 635 (1293)
Q Consensus 556 ~~~~~~~~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL 635 (1293)
| +||+.-+-+++..++... + ++.++.++.+.+..-+++ -.-|-+|.+.+
T Consensus 512 G--------------p~T~~R~~i~~Lal~v~~-~-------------~~~~~~~~~~~~~~~l~r---L~~l~~l~~~i 560 (567)
T PF14745_consen 512 G--------------PPTKERLLILRLALSVAL-Q-------------SKTFSDDELEDLRSLLKR---LDLLSDLQRNI 560 (567)
T ss_pred C--------------CCcHHHHHHHHHHHHHHH-h-------------cCcCCHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 1 134445666676666431 1 234666788777777777 44556678899
Q ss_pred Hhhccc
Q 000772 636 STLTDL 641 (1293)
Q Consensus 636 ~~~~DL 641 (1293)
+++||=
T Consensus 561 ~~~cDc 566 (567)
T PF14745_consen 561 RQACDC 566 (567)
T ss_pred HHhcCC
Confidence 999984
No 7
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=98.15 E-value=0.038 Score=73.35 Aligned_cols=812 Identities=17% Similarity=0.228 Sum_probs=397.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-ccc----------------------cccCCCCCCCC--CCchHHHHHHHHhhh
Q 000772 58 DTKALNQLNTLIQEGKEMASVLYTYR-SCV----------------------KALPQLPNSMK--HSQADLYLETYQVLD 112 (1293)
Q Consensus 58 E~e~~~~ln~vLeeg~~~l~~LytYR-scs----------------------raIpqaisn~q--pn~~eiye~t~~vL~ 112 (1293)
+.++=+++-.+-+.|++++.-||+-+ -|+ +.+|.+..... +-=.....+..+.|.
T Consensus 3 ~~k~aEkl~iln~r~~g~l~rlynikk~~~~~k~kp~fl~dK~~e~~~K~i~kkfp~id~~~~~~~~~~~~~~e~~~~L~ 82 (1116)
T PF09735_consen 3 QQKLAEKLTILNDRGEGMLTRLYNIKKACGDPKSKPSFLSDKFIESAIKYIVKKFPNIDIRSNGLEPLQNRKKEILKSLS 82 (1116)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTS-GGGT-TTTHHHHHHHHHHTT-------TTHHHHHTHHHHHHHHH
T ss_pred cchHHHHHHHHhhcccchhhhccChHhhhcCCCCCCccccccChHHHHHHHHHhCCCCCcccccchHHHHHHHHHHHHHH
Confidence 34455566667789999999999864 452 33444422211 000223566788899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhcC-CCchHHHH---HHHHHHHHHHhhccccccCCCCCcchhHHhhhH
Q 000772 113 LEMSRLREIQRWQASAASKLAADMQRFSRPERRIN-GPTITHLW---SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTF 188 (1293)
Q Consensus 113 PeV~KLk~FyeFs~~a~~~l~~~l~~l~h~E~~q~-l~se~~L~---~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~ 188 (1293)
|...-+.+.|+|.+.+.+.+-..=...++.+-..+ .-...+|+ ..++++=++-..++.|+. .-.|..+.
T Consensus 83 ~~Y~tf~D~~df~d~v~elL~~i~~~~~~ldi~~N~~lt~~yLdL~v~yv~~~lllsri~drK~i-------l~lyn~a~ 155 (1116)
T PF09735_consen 83 PYYYTFVDLMDFRDHVYELLTTIDACQITLDITLNFDLTKAYLDLVVNYVSVMLLLSRIEDRKAI-------LGLYNAAY 155 (1116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----TTTSHHHHHHHHHHHHHHHHHHHHHHT-TTHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeeeccccCHHHHHHHHHHHHHHHHHHHHHhhcccHHHH-------HHHHHHHH
Confidence 99999999999999888877755556677666555 22234555 556666666666665553 33566664
Q ss_pred hhhhhccCCchhHHHHhhhh-hhhhcchhhHHHHHHHHHHHhccccCCcchHHHHHHHH------HHHHHhhhcccccC-
Q 000772 189 TQVSVQWQDTDSMREELDDL-QIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLI------VFAVESLELDFALL- 260 (1293)
Q Consensus 189 sr~~~~~~d~~~v~~E~~~L-SlFlA~~~pil~~L~~~~~~i~k~l~~~~~ed~L~t~a------nvC~~mlE~~~y~~- 260 (1293)
... ++..|. .-++| +|+..+.+ .+|.|+++..-+++ .+.+.|..+. |.-.+-.-+...++
T Consensus 156 ~~~-~g~~e~-----~~~Rl~q~i~~y~~-P~kkL~eef~p~~~-----~i~~aL~Sl~~~~~rr~~~a~~wR~~~~lsl 223 (1116)
T PF09735_consen 156 EMQ-HGQSEP-----SFPRLGQMILDYDN-PLKKLQEEFQPHSR-----RIGSALMSLRPIYPRRNLTADQWRSAQLLSL 223 (1116)
T ss_dssp HTT-SSS--T-----THHHHHHHHHHTSS-HHHHHHHHTTTTHH-----HHHHHHHGGGGTHHHHS--HHHHHHTTTT-S
T ss_pred HHH-cCCCCC-----CHHHHHHHHHHhhh-hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcchHHHHHhcCcccC
Confidence 222 111111 23443 36666643 44555665544432 1122222111 11111111122111
Q ss_pred ---------Cccchh----------hheeeceeeeeecCCCCchhhHHhHhch-hHHHhhhhcCCccccCCCcccCHHHH
Q 000772 261 ---------FPERHI----------LLRVLPVLVVLATSSEKDSESLYKRVKI-NRLINIFKSDPVIPAFPDLHLSPAAI 320 (1293)
Q Consensus 261 ---------p~ek~~----------lLRVM~~~iiL~D~v~~~~~ni~Kri~l-~~~~kifK~~pVVPl~gDm~i~~~~~ 320 (1293)
|..-.. .-|...++..+. |.. ...--.+ +-....++..=|||||+|-.+.+-.+
T Consensus 224 ~~~p~~il~p~~~~~~~~e~lsl~~~~~Wii~g~L~c-p~~-----L~~~~~~~~l~~~aL~~~~~i~LfRde~l~iH~~ 297 (1116)
T PF09735_consen 224 ISPPADILTPAQTDTMACEYLSLEVMERWIIFGFLVC-PQE-----LLQQPSILDLWKLALQDGLVITLFRDEVLNIHKE 297 (1116)
T ss_dssp SSSGGGTTS----TTHHHHHS-HHHHHHHHHHHHHHT-THH-----HHH-HHHHHHHHHHHTT-SEEEEETTEEEEHHHH
T ss_pred CCChhhccCCccCcchhhhhhhhhhHHHHHhheeeec-hhh-----hcCChHHHHHHHHHhccCcEEEEeccchhhHHHH
Confidence 111111 111112211111 110 0000012 22344588899999999999999998
Q ss_pred Hhhhchhhhhhhhhc-ccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhhh
Q 000772 321 LKELSMYFQKFSAQT-RLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWC 399 (1293)
Q Consensus 321 ~k~~~~~~~~~~~~~-~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~~ 399 (1293)
++. ||+..+..+ |... .+|+.+ +-+. +=+.+..|...|+..- ..++.+.-..+|..-.++
T Consensus 298 ~~~---~~~~~k~~~Kr~~~--------vkE~~~----~A~~-~~~~~HreRR~~Lr~~---Lkel~~l~~dqPgLLgPK 358 (1116)
T PF09735_consen 298 IET---FFESKKGYSKRLSE--------VKECAE----QALQ-NAGDLHRERRRYLRQA---LKELVLLLTDQPGLLGPK 358 (1116)
T ss_dssp HHH---HHTT-GGGTTHHHH--------HHHHHH----HHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHH-GGGGTTT
T ss_pred HHH---HHHHhhhhhhhHHH--------HHHHHH----HHHH-hcchhhHHHHHHHHHH---HHHHHHHhhhCccccchh
Confidence 876 453222111 1000 112222 1122 2333444444444322 223333322222211111
Q ss_pred HhhhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHH--HHHHHHHHHH
Q 000772 400 KEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEER--KALVELVSYI 477 (1293)
Q Consensus 400 ~~~~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~--~alveiIamI 477 (1293)
..+++.||-+- .+=.-|=+-|-.+.++ +..+ .++ ++|- .-+.|+|-.+
T Consensus 359 -------~~~v~~aLs~A-------rdEV~W~~rH~~~~p~-~~~k------------~~~---~~d~~D~~i~eLL~~m 408 (1116)
T PF09735_consen 359 -------ALMVFAALSFA-------RDEVLWLFRHNDNPPP-KKKK------------KKT---DEDYIDRQIPELLFYM 408 (1116)
T ss_dssp -------HHHHHHHHHHH-------HHHHHHHHHHHHHS--------------------SS---TTTT--TTHHHHHHHH
T ss_pred -------HHHHHHHHHHH-------HHHHHHHHHccCCCCc-cccc------------cCC---ccccccccHHHHHHHH
Confidence 24566665432 3334566655542111 1100 011 1121 1378888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhcCCCCCchhhhhccccC
Q 000772 478 KNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVG 557 (1293)
Q Consensus 478 K~l~~lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~ 557 (1293)
--|..++.++..+++++--.++. .|--..|++.++.-..=..+...+|+++-++...=. .+. .
T Consensus 409 ~eLr~Lv~k~~~viqrYy~~yl~----~~Da~~L~~~i~~~~~~~eee~~ilss~~~~l~~l~------~~~-------~ 471 (1116)
T PF09735_consen 409 EELRSLVRKYSQVIQRYYVQYLS----GYDALVLNELIQNLSVCPEEESVILSSFVQTLSSLS------VKQ-------V 471 (1116)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHH----HTHHHHHHHHHTT-S---HHHHHHHHHHHHHHHT--------HHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhCC------ccc-------c
Confidence 88999999999988863332222 222223333332211112344447777755553321 000 0
Q ss_pred CCCCCccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhC-hHHHHH
Q 000772 558 EESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILD-YTATVS 636 (1293)
Q Consensus 558 ~~~~~~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn-~s~tL~ 636 (1293)
++.... .-+.--++-+|.+.. .|.. |..+.=.+.+.|-...+...||..+.| +.+.|+
T Consensus 472 e~~~~~-------Df~~lRlDW~RLqa~--~S~~------------~s~l~L~~~~~L~~~mN~i~fHsk~VD~lde~L~ 530 (1116)
T PF09735_consen 472 ENGEKF-------DFSGLRLDWFRLQAY--TSSS------------RSPLQLRENEKLASLMNTIVFHSKMVDSLDELLR 530 (1116)
T ss_dssp HTT------------HHHHHHHHHHHHH--HHST------------T-SS-GGG-HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ccCCcC-------chHHHHHHHHHHHHH--Hhhc------------ccccCccchHHHHHHHHHHHHHHhhhchHHHHHH
Confidence 010000 122233555553322 1322 344556788889999999999999987 567779
Q ss_pred hhccccchhhhhhhhcc--CCeeecc----CcCcchHHHHHHHhhcCCcchhhhhccc---ccccchHHHHHHHHHhhhh
Q 000772 637 TLTDLGFLWFREFYLES--SRVIQFP----IECSLPWMLVDHVLESQNAGLLESVMMP---FDIYNDSAQQALVVLKQRF 707 (1293)
Q Consensus 637 ~~~DLS~LWfREfyLEl--~~~iQFP----Ie~SLPWILtdhiL~s~~~~l~E~ilyP---LdLYNDAA~~AL~~lk~qf 707 (1293)
+-||||.|||---.+|- ....++| =-++.|-|+..+. ..-. |.+ | -.|=++|+..|= -
T Consensus 531 etSdLs~lcfY~~~fe~~F~~~l~~psq~ry~iaf~~icshF~-~~~h----~lc--PEE~~~i~~~sl~~a~------~ 597 (1116)
T PF09735_consen 531 ETSDLSILCFYPRFFEKMFRQCLEGPSQPRYSIAFPLICSHFP-NCLH----ELC--PEEREHIGERSLSLAN------S 597 (1116)
T ss_dssp HHH--GGGGG-HHHHHHHHHHHHHSHHHHGGGGHHHHHGGGGG-GG------TT---GGGHHHHHHHHHHHHH------H
T ss_pred HhcchhheeehhHHHHHHHHHHHhccccchHHHHHHHHHHHHH-hhCC----ccC--ccchHHHHHHHHHHHH------H
Confidence 99999999987666664 4455555 1133444444333 2212 222 2 113344444443 3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc----cccccc-CCCC-c------ccCChh--------HHH
Q 000772 708 LYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPS----FLFSSD-NGEK-Y------SVQPMR--------LSA 767 (1293)
Q Consensus 708 LYDEIEAEvnLCFDqlv~kLSd~iF~~yK~~Aas~lLd~~----f~~~~~-~~~~-~------~~~~~R--------y~~ 767 (1293)
+.|||..++..|+.++.-....-.-.--=+.|| .++.+. .++.-. .|.. . ..+.+| ...
T Consensus 598 fLeeiak~~~~~i~~l~~e~~~L~~qLlP~~aA-~~~~~~~~~k~~k~~~k~~~~~~~~PG~ES~r~~r~~~t~ld~l~~ 676 (1116)
T PF09735_consen 598 FLEEIAKQTSNVINQLCSEQCSLEDQLLPKHAA-RLISQARNKKKKKQKNKKGEPERVKPGAESYRKNRENLTMLDKLHQ 676 (1116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGH-HHHHHHTT-----------------TTGGG--S-TTS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHhhhcccccCcCCCCCCCCCchhccCCCchhhhhHHHHHH
Confidence 457899998888766543311111100001111 111110 000000 0100 0 011233 222
Q ss_pred --------HhhcccceecccccchhhHHHHHHHHHHHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000772 768 --------LFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDR-FESQDLCAIVELEKLLDILKHTHELLSKDLSID 838 (1293)
Q Consensus 768 --------LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~ai~r-fEs~dl~~iveLe~ll~v~R~TH~LLse~L~Ld 838 (1293)
+=..+.|++....+..+--+.|++-..|++.|-..+.- -+++++.-=-|++..|..--..=+.+..+.++|
T Consensus 677 ~L~eLc~aln~~~~I~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~~~~~~~~i~RPS~ll~~l~a~m~vlq~le~~v~iD 756 (1116)
T PF09735_consen 677 ALTELCSALNHFPSIVVFDHVFVPREYLREHLENRFRRALVSMVMYNPDDQEIARPSELLSSLRAYMSVLQSLENYVSID 756 (1116)
T ss_dssp HHHHHHHHHTS-S-EEETTEEE-HHHHHHHHHHHHHHHHHHHHT--BTTTTB---HHHHHHHHHHHHHHHHHGGGTSS--
T ss_pred HHHHHHHHHhcCCCeEEEeeEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22236889999999999999999999999998877752 246778777788888877777777777788887
Q ss_pred c---H-HHHHHHhhcCCCCCCcchHHHHHH----HHHHhhccc-ccccccccCcccccCCCCccCCCCCCCCCCCCCcce
Q 000772 839 S---F-RLILNEMQENISLVSFSSRLASQI----WSEMQSDFL-PNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFY 909 (1293)
Q Consensus 839 p---F-~~ml~Ean~~~s~~s~~gRIt~hv----~~eL~~D~~-pNy~yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l 909 (1293)
= | +.++.+....+ ....+.||..+ ..-|..|.- ++.+|..+-+.||..+.. ..|-..
T Consensus 757 vt~~~~~vLLqqtq~~d--~~g~~ti~~~yt~WYle~llr~~s~~~ivfSp~~~~FvS~~~~--------~~~f~a---- 822 (1116)
T PF09735_consen 757 VTRLFRNVLLQQTQPVD--SHGEKTITTLYTNWYLENLLRDASNGGIVFSPSRKCFVSSRPE--------QGPFNA---- 822 (1116)
T ss_dssp HHHHHHHHHHHTTSSB---TTS-B-HHHHHHHHHHHTHHHHHHTTSEEEETTTTEEEE-SSS-----------S-T----
T ss_pred HHHHHHHHHHHhcCCcc--cCCcccHHHHHHHHHHHHHHHhccCCcEEeecHHHhhhCCCCc--------cCCcCh----
Confidence 5 1 22333333222 22334444433 223444433 445788888888855321 011001
Q ss_pred ecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccCccCCCccc
Q 000772 910 CGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGV 989 (1293)
Q Consensus 910 ~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~dyG~ 989 (1293)
..|.-...++|+|+|+|+-|+..+-+.|+.++-+.++.|+..|..=++. ...-+..|..
T Consensus 823 -----------------e~ytD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~elkk~v~~N~d~----L~~l~~~~~~ 881 (1116)
T PF09735_consen 823 -----------------EEYTDLNELRALVELIGPYGVKFLDENLMWHVASQVNELKKLVRQNRDV----LEQLRSNFDK 881 (1116)
T ss_dssp -----------------HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHH-TT-
T ss_pred -----------------HHcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHhcCC
Confidence 1234567789999999999999999999999999998877666532222 2223444555
Q ss_pred hhHHHHHHHHhccccccchHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 000772 990 TGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREV 1036 (1293)
Q Consensus 990 ~g~~~~~~~~l~~~~~~dlk~~v~~~frElGN~i~~~~lle~aL~q~ 1036 (1293)
++.+. +.++.+. | -..|++-+..+|+++.|=.|+-+||+..
T Consensus 882 ~~~~~---~~~~~l~--~-~d~vl~r~i~iG~iL~FR~ll~eAl~~V 922 (1116)
T PF09735_consen 882 PEKME---ELLKQLT--D-LDNVLQRMIIIGVILSFRQLLQEALRDV 922 (1116)
T ss_dssp HHHHH---HHHTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHhhc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 3332222 2 3569999999999999999999998765
No 8
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=90.00 E-value=20 Score=42.80 Aligned_cols=280 Identities=15% Similarity=0.227 Sum_probs=155.8
Q ss_pred hhcccccccchHHHHHH---HHHhhhhhHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhhhhc-cCccccccccCCCCc
Q 000772 684 SVMMPFDIYNDSAQQAL---VVLKQRFLYDEIEAEVDHCFDI-FVSRLCETIFTYYKSWAASEL-LDPSFLFSSDNGEKY 758 (1293)
Q Consensus 684 ~ilyPLdLYNDAA~~AL---~~lk~qfLYDEIEAEvnLCFDq-lv~kLSd~iF~~yK~~Aas~l-Ld~~f~~~~~~~~~~ 758 (1293)
.+-|-+.-.+|++.-+. ..-+..-|++--+.|+.-|++. ++=.|+..|=+.-+=.+=+-+ ++++ .++
T Consensus 25 rl~y~~~Al~d~~~~l~~a~h~~~~~~l~~~~~~~i~~~l~~~~i~plc~~IE~dLRl~~Hshl~~~~~--------np~ 96 (350)
T PF14744_consen 25 RLPYLFSALSDCVPILKSARHLESPEDLLESYDKEIRECLQEEIIDPLCRDIETDLRLHIHSHLKLDDR--------NPF 96 (350)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccC--------CCC
Confidence 33333444455443332 2222344555555566666644 667777776654444333322 2221 122
Q ss_pred ccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000772 759 SVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSID 838 (1293)
Q Consensus 759 ~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~ai~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L~Ld 838 (1293)
+....++..+++-+-+++.||-||+..-|++=+++.+..=-..|.. |-...-|. +++--+..+|.
T Consensus 97 ~~~~~dl~~~l~l~p~~~~~~~i~ik~~ve~yL~~tFYnLttva~h-----dwktY~eM----------r~lA~~kYgL~ 161 (350)
T PF14744_consen 97 KTGMRDLSRFLRLPPIRFFGRFIDIKEEVEHYLDKTFYNLTTVALH-----DWKTYEEM----------RNLAKQKYGLR 161 (350)
T ss_pred CcchHHHHHHHcCCcccccCeeeeHHHHHHHHHHHHHHhccccchh-----hHHHHHHH----------HHHHHHhcCCc
Confidence 2334677889988999999999999999999999988763333322 22222222 22222233443
Q ss_pred cHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccccccccccCcccccCCCCccCCCCCCCCCCCCCcceecchhhHHH
Q 000772 839 SFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSA 918 (1293)
Q Consensus 839 pF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A 918 (1293)
.-|.=|-. -.--.|--.+.|-.-+. -|..+|+||-.+|-|| +|.| ++|.|
T Consensus 162 l~d~~LP~------~tleQglDVL~ImrNI~-~FVs~Y~YNln~Q~Fv----------Er~S----------~sK~L--- 211 (350)
T PF14744_consen 162 LVDDHLPS------QTLEQGLDVLEIMRNIH-VFVSRYNYNLNNQIFV----------ERSS----------NSKHL--- 211 (350)
T ss_pred cccccCCC------cchhhhhHHHHHHhhhH-HHHHhcccccccceEE----------EecC----------CCcee---
Confidence 32211111 01224655666666664 6899999999999999 2222 33333
Q ss_pred HHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHH----------------HHHHHHHhCCcccCc
Q 000772 919 HQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEP----------------LIMGLQETLPKSIGL 982 (1293)
Q Consensus 919 ~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~----------------~v~~l~~~mP~~~~l 982 (1293)
..+|+.|++.-+|==|-+=+.=.|.-.-.-+++|++...+ |.++-++. ++
T Consensus 212 ---------~tI~i~hianSIRtHG~GImnTtVN~~YqfLrkKf~~fSqFL~De~IksrL~kd~r~~~e~k~~----~~- 277 (350)
T PF14744_consen 212 ---------NTINIRHIANSIRTHGTGIMNTTVNFAYQFLRKKFQTFSQFLFDEHIKSRLLKDIRFFRENKES----KD- 277 (350)
T ss_pred ---------eEeeHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhc----cC-
Confidence 4688999999999888765555555555555555543221 11222211 12
Q ss_pred cCCCccchhHHHHHHHHhccccccchHHHHH----HHHHHHhhHHHHHHHHHHHh
Q 000772 983 LHFDSGVTGCMRLVKEQLNWGTKSELKAEVL----HGIKEIGSVLYWMGLLDIVL 1033 (1293)
Q Consensus 983 p~~dyG~~g~~~~~~~~l~~~~~~dlk~~v~----~~frElGN~i~~~~lle~aL 1033 (1293)
..|-.+=+-.|-.+--+-.+.+|..+ -+ +..-|||||+-+.+|+-.+-
T Consensus 278 --~~Yp~erAekf~k~irkLG~~~dG~s-ylD~FR~LItqIGNA~gyVRmirsgg 329 (350)
T PF14744_consen 278 --QKYPYERAEKFNKGIRKLGLSDDGQS-YLDQFRQLITQIGNAMGYVRMIRSGG 329 (350)
T ss_pred --CCCCHHHHHHHHHHHHHcCCCCCcch-HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34444555555554433222333332 22 23458999999999998873
No 9
>PRK02866 cyanate hydratase; Validated
Probab=50.66 E-value=1.9 Score=45.62 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=36.6
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhc
Q 000772 1151 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEA 1215 (1293)
Q Consensus 1151 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~ 1215 (1293)
-||+|-++| ||..+.- --.+|-||||.+ .+.||+.+|-|+..-+|
T Consensus 86 iYR~yE~v~-vYG~~~K---~~i~E~FGDGIM----------------SAIdf~~~v~k~~dp~G 130 (147)
T PRK02866 86 IYRFYEMVQ-VYGTTLK---ALIHEKFGDGIM----------------SAIDFKLDVDKVEDPKG 130 (147)
T ss_pred HHHHHHHHH-HhhHHHH---HHHHHHhCCcee----------------eeeeeceeeeeccCCCC
Confidence 599999999 7776544 267899999986 67999999999876664
No 10
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=50.35 E-value=1.9 Score=45.76 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=36.8
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhc
Q 000772 1151 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEA 1215 (1293)
Q Consensus 1151 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~ 1215 (1293)
-||+|-++| ||-.+.- --.+|-||||.+ .+.||+..|-|+..-+|
T Consensus 89 iYR~yE~v~-vYG~~~K---~~i~E~FGDGIM----------------SAIdF~~~v~k~~dp~G 133 (150)
T TIGR00673 89 MYRFYEMLQ-VYGTTLK---AVVHEKFGDGIM----------------SAIDFKLDVEKVADPGG 133 (150)
T ss_pred HHHHHHHHH-HhhHHHH---HHHHHHhCccee----------------eeeeeceeeeeecCCCC
Confidence 599999999 7776654 267899999986 67999999999876665
No 11
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=48.97 E-value=9.5 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHhhcccccccccccCcccccCCCCc
Q 000772 856 FSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVP 892 (1293)
Q Consensus 856 ~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~ 892 (1293)
..||+++| |. .|||+|-||.-.-||+-+|..+
T Consensus 87 i~GrVtEq----la-Pffp~f~ynPkD~RfIGTPvD~ 118 (175)
T COG4741 87 ILGRVTEQ----LA-PFFPEFKYNPKDARFIGTPVDF 118 (175)
T ss_pred HhhhhHhh----hc-ccccCCCcCCccceeeCCCceE
Confidence 46888888 55 8999999999999999999764
No 12
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=48.11 E-value=23 Score=45.16 Aligned_cols=100 Identities=5% Similarity=-0.090 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhcCCC
Q 000772 70 QEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGP 149 (1293)
Q Consensus 70 eeg~~~l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~FyeFs~~a~~~l~~~l~~l~h~E~~q~l~ 149 (1293)
+.++++.+++++|..|.+..+.+..+-.++..+.+........|..-|..-+++||.-.....+-...+.+|...+....
T Consensus 131 kaie~f~~ev~rlch~ekr~dfVseaylltlg~finmfavldElknmK~svknd~st~rra~qfl~~msd~~a~~~~qnl 210 (1253)
T KOG3534|consen 131 KAIERFCEEVKRLCHAEKRKDFVSEAYLLTLGKFINMFAVLDELKNMKASVKNDFSTYRRAAQFLTAMSDTQAVQESQNL 210 (1253)
T ss_pred HHHHHHHHHHHHHHhHHhcchhHHHHHHHHHHHHHHHHHHHhHHHHhHHHhhhhHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 46889999999999999999999888888888888888888889999999999999766555554555666666655555
Q ss_pred chHHHHHHHHHHHHHHhhcc
Q 000772 150 TITHLWSMLKLLDVLVQLDH 169 (1293)
Q Consensus 150 se~~L~~La~iLdf~l~lD~ 169 (1293)
|.....|...--++.++++.
T Consensus 211 Smfla~~nki~~~l~~~l~~ 230 (1253)
T KOG3534|consen 211 SMFLATQNKIKDDLKLQLET 230 (1253)
T ss_pred HHHHHHhcchhhHHHHHHHh
Confidence 54444455555566666654
No 13
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=42.10 E-value=3.8 Score=42.39 Aligned_cols=48 Identities=31% Similarity=0.398 Sum_probs=38.5
Q ss_pred hHhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhccc
Q 000772 1150 DFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAIS 1217 (1293)
Q Consensus 1150 ef~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~~~ 1217 (1293)
--||.|.-+| ||..|.. ..++|.||||.+ .+.||+--|-||..-+|.+
T Consensus 88 ~iYRfYE~~q-vYG~~lK---~lihE~FGDGIm----------------SAIdf~ld~ek~~dpeG~~ 135 (151)
T COG1513 88 LIYRFYEMLQ-VYGTTLK---ALIHEKFGDGIM----------------SAIDFKLDVEKVADPEGGE 135 (151)
T ss_pred HHHHHHHHHH-HHchhHH---HHHHHHhccchh----------------hheeeeeeeeeccCCCCCc
Confidence 3699999999 7888765 378899999975 5689999999997666543
No 14
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=37.30 E-value=3.1 Score=38.57 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=32.6
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhh
Q 000772 1151 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVE 1214 (1293)
Q Consensus 1151 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d 1214 (1293)
-||++.++| +|-.... --.+|-||||.+ .+.||+..+-|+....
T Consensus 8 iYRlyE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~k~~dp~ 51 (69)
T cd00559 8 IYRFYEIVQ-VYGPTLK---ALIHEKFGDGIM----------------SAIDFKLDVDKVEDPG 51 (69)
T ss_pred eeehHHHHH-HhhHHHH---HHHHHHcCCcee----------------eeEEeeeeEEeccCCC
Confidence 478988888 4544332 257799999986 6789999988887553
No 15
>KOG1917 consensus Membrane-associated hematopoietic protein [General function prediction only]
Probab=33.57 E-value=2.3e+02 Score=38.02 Aligned_cols=99 Identities=22% Similarity=0.368 Sum_probs=72.1
Q ss_pred CCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhccccccc
Q 000772 928 GFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSE 1007 (1293)
Q Consensus 928 ~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~~~d 1007 (1293)
.|.-+..++|+++|+|+=|+-.+-+.|.=|+.+.|+.++.-|.+=++.+ .--|..+..+..++=---+|+.
T Consensus 826 e~SDl~ElrAlvel~GpYGvk~Lse~LmwHvasqV~elkklv~tn~d~L----~~~rssfdkpd~m~~~~~~l~~----- 896 (1125)
T KOG1917|consen 826 EYSDLSELRALVELLGPYGVKFLSEMLMWHVASQVNELKKLVVTNKDVL----EQARSSFDKPDRMKRLLKRLQI----- 896 (1125)
T ss_pred hcCCHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHhCCCHHHHHHHHHHHhH-----
Confidence 4556778899999999999999988888899999987776665555442 1223334445555544444443
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 000772 1008 LKAEVLHGIKEIGSVLYWMGLLDIVLREV 1036 (1293)
Q Consensus 1008 lk~~v~~~frElGN~i~~~~lle~aL~q~ 1036 (1293)
-..|+|-+-++|=++.|=-++-.||+..
T Consensus 897 -~D~VL~rmtiiGvil~Frdll~Ealr~V 924 (1125)
T KOG1917|consen 897 -ADTVLQRMTIIGVILSFRDLLHEALRDV 924 (1125)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2458999999999999999998888653
No 16
>PHA02888 hypothetical protein; Provisional
Probab=32.93 E-value=71 Score=30.72 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHHHHhhhcCCC-c-cccCCccCCCCCCCCchhHHHHHHH
Q 000772 571 APTAAQVHCLQFLIYEVVSGGN-L-RKPGGLFGNTGSEIPVNELKQLESF 618 (1293)
Q Consensus 571 ~Ps~tQL~ml~~li~~~~s~~~-~-~k~~g~f~~~r~~l~~~~~~~i~~F 618 (1293)
-||++|- .|+..++|.- . +...+-.. .++...++++..|+++
T Consensus 4 lpsscq~-----iin~ving~cffgkc~nkk~~-i~~~mt~~el~yiq~w 47 (96)
T PHA02888 4 LPSSCQH-----IINRVINGECFFGKCENKKLA-IKKAMTPQELAYIQEW 47 (96)
T ss_pred ccHHHHH-----HHHHHccceeeeeeccCccee-eecCCCHHHHHHHHHH
Confidence 4899993 4555555521 0 11111111 3577888888888877
No 17
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=30.58 E-value=3.7 Score=38.54 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=32.6
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhc
Q 000772 1151 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEA 1215 (1293)
Q Consensus 1151 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~ 1215 (1293)
-||++.++| +|-.... --.+|-||||.+ .+.||..++-|+..-+|
T Consensus 12 iYR~yE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~k~~d~~G 56 (73)
T PF02560_consen 12 IYRLYEIVQ-VYGPAIK---ALIHEKFGDGIM----------------SAIDFKMDVEKVEDPKG 56 (73)
T ss_dssp HHHHHHHHH-HHHHHHH---HHHHHHT-SEEE----------------EEEEEEEEEEEEE-TTS
T ss_pred EeeeehhhH-hhCHHHH---HHHHHhhCcceE----------------EEeeEEEEEEEeeCCCC
Confidence 589999998 6665443 257799999987 56899999888865553
No 18
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=30.57 E-value=25 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHhhcccccccccccCcccccCCCCcc
Q 000772 856 FSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPL 893 (1293)
Q Consensus 856 ~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~~ 893 (1293)
.-|+|++| |. .|+|.|-||.+.-||+-+|..|.
T Consensus 74 l~Gkv~Eq----la-P~lp~F~ynP~D~RFlG~PVD~I 106 (156)
T PF10107_consen 74 LKGKVSEQ----LA-PFLPEFPYNPKDARFLGSPVDFI 106 (156)
T ss_pred HcchhHHH----hh-hccCCCCCChhhheecCCCceEE
Confidence 56999998 44 88999999999999999998654
No 19
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=30.22 E-value=33 Score=36.39 Aligned_cols=35 Identities=37% Similarity=0.527 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHhhhhc
Q 000772 709 YDEIEAEVDHCFDIFVSRLCETIFT----YYKSWAASEL 743 (1293)
Q Consensus 709 YDEIEAEvnLCFDqlv~kLSd~iF~----~yK~~Aas~l 743 (1293)
-++||+.|+=||-++|+||+|..|. .-=.||..-+
T Consensus 34 v~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l 72 (153)
T PF08146_consen 34 VDEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGL 72 (153)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccC
Confidence 3699999999999999999999998 2235665533
No 20
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=20.09 E-value=1.9e+02 Score=28.03 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhcCCc---chHHHHHHHHHHHHHHHHHHhc
Q 000772 795 FRENLEFLFDRFESQDL---CAIVELEKLLDILKHTHELLSK 833 (1293)
Q Consensus 795 ~~~~l~~ai~rfEs~dl---~~iveLe~ll~v~R~TH~LLse 833 (1293)
..+.|+..+.++|+|++ .++-.+++-++..|.||+.|.+
T Consensus 15 ~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~ 56 (81)
T COG1722 15 ALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQ 56 (81)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999 4999999999999999999864
Done!