Query 000772
Match_columns 1293
No_of_seqs 125 out of 127
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 15:52:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000772.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_544-548//hhsearch_pdb/000772hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_A Cytoplasmic FMR1-intera 1.0 1 1 3384.7 85.3 1220 2-1286 3-1252(1253)
2 3p8c_B NCK-associated protein 1.0 1 1 49.7 50.8 800 58-1036 10-927 (1128)
3 1dw9_A Cyanate lyase; cyanate 1.0 1 1 25.4 -4.2 60 1129-1215 79-138 (156)
4 2pfc_A Hypothetical protein RV 1.0 1 1 19.6 1.9 19 714-732 76-94 (183)
5 3uf7_A UDG, uracil-DNA glycosy 1.0 1 1 17.7 -2.7 18 174-191 38-56 (237)
6 3fci_A UDG, uracil-DNA glycosy 1.0 1 1 17.7 -2.7 18 174-191 38-56 (223)
7 3tr7_A UDG, uracil-DNA glycosy 1.0 1 1 17.4 -2.8 11 175-185 45-55 (232)
8 1tue_A Replication protein E1; 1.0 1 1 16.5 1.1 52 926-992 18-69 (212)
9 1yku_A Hypothetical protein PX 1.0 1 1 13.9 2.2 14 712-725 112-125 (136)
10 4a94_C Carboxypeptidase inhibi 1.0 1 1 13.7 0.7 18 16-33 1-18 (53)
No 1
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=3384.71 Aligned_cols=1220 Identities=30% Similarity=0.508 Sum_probs=1153.8
Q ss_pred CCCCHHHH---HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCH---HHHHHHHHHHHHHHHHHHH
Q ss_conf 86588889---96314688988886556896217521588899985455210010334---6799999999999988999
Q 000772 2 AAVPVEEA---IAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLS---EDTKALNQLNTLIQEGKEM 75 (1293)
Q Consensus 2 ~~v~~~~a---v~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~~nf~Dr~a~~t~~~---eE~e~~~~ln~vL~eg~~~ 75 (1293)
+.||++|| |++|++|+||||||||||+|+||.| ++||||||+||+||+||++ ||+++|++||+||++|+++
T Consensus 3 ~~~~~~~a~~~v~~L~~~~l~d~qP~ie~~~~~~~y---~~~~~tnf~D~~a~~t~~~k~~eE~e~~~~v~~vL~eg~~~ 79 (1253)
T 3p8c_A 3 AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLY---QPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEY 79 (1253)
T ss_dssp --CCHHHHHHHHHHHTTCCC-------------------------------------CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 622099998677776347898888766678763365---32688761057778864677788999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHH
Q ss_conf 99984031110115789888898806889989776522799889999999999999999998623511003788457999
Q 000772 76 ASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLW 155 (1293)
Q Consensus 76 l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~~~se~~L~ 155 (1293)
+++|||||||||||||+++|+|||++|+||+||+||+|+|+|||+||+||.+++++||++|++||+.|++++++++++++
T Consensus 80 l~~LytYrgcsraIpqa~~n~qpn~~el~e~t~~vL~PeV~KLk~F~~Fs~~~~~~~~~~l~~L~~~e~~~~~~sqAl~~ 159 (1253)
T 3p8c_A 80 AVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLI 159 (1253)
T ss_dssp HHHHHTCCCSGGGSCCCCSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99988641027651757566798888999999998636999999999999999999999999865521123423289999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999989986033335688777603678666755321038942279876110022012136999899999872034677
Q 000772 156 SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTE 235 (1293)
Q Consensus 156 ~La~iLdf~l~lD~LK~~kasIqNDFS~YRRa~sr~~~~~~d~~~i~~E~~~LSlFlA~~~pil~~L~~~~~~i~k~l~~ 235 (1293)
||++||||+++||+||||||||||||||||||+++++ +++|++.+ +|+++||||||++|||+++|++++..++
T Consensus 160 qLa~iLdf~l~lD~LKn~k~sIqNDFS~YRRt~s~lk-~~~d~~~~-~E~~~lSlFlA~~~pil~~L~~~~~~I~----- 232 (1253)
T 3p8c_A 160 TLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLR-KMADPQSI-QESQNLSMFLANHNKITQSLQQQLEVIS----- 232 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT-CCCCHHHH-HHHHHHHHHHHSTTHHHHHHHHHHHTST-----
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHH-CCCCHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHCCC-----
T ss_conf 9999999999998874123332034899998988874-16730778-8998788998343389999999870677-----
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECEEEEEECCCCCCHHHHH-----HHHCHHHHHHHHHCCCCCCCC
Q ss_conf 666888999999999830014466874311112240233346238888503578-----673234788642119951468
Q 000772 236 NSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLY-----KRVKINRLINIFKSDPVIPAF 310 (1293)
Q Consensus 236 ~~~ed~L~tianvC~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~-----Kri~l~r~~kifK~~pVVPlf 310 (1293)
||||+|+||||+|++|+|+++|++|+|||||||||||+|||||| +..||| |||||+|++||||++||||||
T Consensus 233 -~~ediL~tmanvC~~mlE~~~y~~peEk~~lLRVMv~~iiL~D~---~~~ni~k~~~~Kri~l~rl~kIfK~~pVVPl~ 308 (1253)
T 3p8c_A 233 -GYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDG---SVSNIYKLDAKKRINLSKIDKYFKQLQVVPLF 308 (1253)
T ss_dssp -THHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSS---SSCCHHHHHHTTSSCHHHHHHHHHHSCEEEEE
T ss_pred -CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEECC---CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf -69899999999999997445446826663544023204677348---70114566431114678999998718854476
Q ss_pred CCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98656978999631134442211001356899999994001000004687630356785587999999998668887311
Q 000772 311 PDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKS 390 (1293)
Q Consensus 311 GDm~i~~~s~ik~~~~y~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~h~~~~~~la~~~n~~~~~~~ 390 (1293)
|||||+|++|+|+++||+.++ |+|++ +++ ..++||+|++||++||++|++|+++||+++|++++++.
T Consensus 309 gDm~i~p~s~lk~~~~~~~~~---s~wp~---~~~-------~~~~~y~i~~~l~~~r~~~~~~~~~la~~~n~~~~~~~ 375 (1253)
T 3p8c_A 309 GDMQIELARYIKTSAHYEENK---SRWTC---TSS-------GSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGS 375 (1253)
T ss_dssp TTEEEETHHHHHTSTTTGGGG---GGCST---TCC--------------CHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred CCCCCCHHHHHHHCCCCCCCH---HCCCC---CCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 765058999985488865320---01889---987-------75411509861589999999999999987517876112
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH
Q ss_conf 79761456686433138999999898766589999877522046889999998943477730358888607997889999
Q 000772 391 TDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKAL 470 (1293)
Q Consensus 391 ~~~~d~~~~~~~~~~~~~~~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~al 470 (1293)
. +.|..++..+++++|+++++||||||+||++|||||||||+||+ |++ .|++||+++++||||||||||++||+||
T Consensus 376 ~-~~~~~~s~~~~~~~~~~~l~GlqlLS~Wt~~V~Eq~awKl~~P~-~~~--~n~~~p~~a~~YEravRYNYs~~Er~al 451 (1253)
T 3p8c_A 376 G-RQEAQKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPT-DKY--SNKDCPDSAEEYERATRYNYTSEEKFAL 451 (1253)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CTT--TCTTCCTTSCHHHHHTGGGCCHHHHHHH
T ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCC--CCCCCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 0-13577770466799999999999999999999999999971888-876--5545886214788889808898999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9999999999997755349999999999999999999998999999983042139-999999989775321079999034
Q 000772 471 VELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDL-SRILSDMRTLSADWMANNSRPEAE 549 (1293)
Q Consensus 471 veiIamIK~l~~ll~~~e~~~~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~-~~il~~iR~~~~Dw~~g~~~~~~~ 549 (1293)
||+|||||||+++|.++|++++++||++||+++|+|||++|++|||+|.||||++ .++|++||++||||++|.+|++++
T Consensus 452 ve~IamIK~l~~ll~~~e~~~~~~i~~~I~~evQ~Fvq~~L~~~L~~a~kkKK~~~~~iL~~iR~~~~DW~~~~~p~~~~ 531 (1253)
T 3p8c_A 452 VEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFNDP 531 (1253)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTTCHHHHHHHHHHHHHHCCCSSSSCCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999987999999999999999999999999999999986145678999999999985760388887652
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31012357788885456777797766799999999866239975556886678899999110799999998522458640
Q 000772 550 QQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHIL 629 (1293)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~r~v~Ps~tQL~ml~~li~~~~~~~~~~k~~g~f~~~~~~l~~~~~~~i~~F~~~s~~~~~LL 629 (1293)
+.++.++.+.+.++.+|+|+||||+|||||+|+|+++++++++ +|.+ .+||+|+++++++|++||++|+||++||
T Consensus 532 ~~k~~k~~~~~~~~~~~~R~v~PsstQL~~lRt~l~sli~~~s----~~~~-~~~k~l~~~~~~~i~~F~~~s~~~~~LL 606 (1253)
T 3p8c_A 532 ALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS----GSKK-TLRSSLEGPTILDIEKFHRESFFYTHLI 606 (1253)
T ss_dssp HHHTCCCC---CCCCCCCCSCCCCHHHHHHHHHHHHHHHC----------C-CTTTTSCHHHHHHHHHHHHHGGGHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC----CCCC-CCCCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 0025778777767445667899977799999999999836556----6655-5424488768999999999751289885
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHCC--CCEEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 817789862033210355553136--881213676761079899886208841023110221113157999999985434
Q 000772 630 DYTATVSTLTDLGFLWFREFYLES--SRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRF 707 (1293)
Q Consensus 630 ~~s~tl~~~~DLS~LWfREfyLEl--~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qf 707 (1293)
||++||++|||||||||||||||+ |++||||||||||||||||||++++|+|+|+||||||||||||++||++|||||
T Consensus 607 ~~~~tl~~~~DLS~LWfREfyLElt~~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qf 686 (1253)
T 3p8c_A 607 NFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQF 686 (1253)
T ss_dssp THHHHHHHHSCCGGGSCCHHHHHHTTTSCSSCCGGGCHHHHHHHHHHHHTCGGGTTTHHHHHTHHHHHHHHHHHTSCBHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 64989998633788899999875235842772511276299999787269813688785006677289999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCC-CHHHHHHHHCCCCEECCCCCCHHH
Q ss_conf 3899999885279999999999999999987632104920101124-78875569-702899863036123351211224
Q 000772 708 LYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD-NGEKYSVQ-PMRLSALFKMTRVKLLGRSINLRS 785 (1293)
Q Consensus 708 LYDEIEAEvnLCFDqlv~kLsd~iF~~yK~~Aas~lLd~~f~~~~~-~~~~~~~~-~~Ry~~LL~QrhvqLLGRsIDL~~ 785 (1293)
||||||||||||||||||||||+||+|||++|+|++|||+|+++|+ .|.++..| ++||++|||||||||||||||||+
T Consensus 687 LYDEIEAEvnLCfDqlv~kLSd~iF~~yK~~Aas~lLD~~f~~e~~~~~~~~~~p~~~Ry~~ll~QrhvqLLGRsIDL~~ 766 (1253)
T 3p8c_A 687 LYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNR 766 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCCCCCCCCCCCHHHHTCSCEEETTEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 28999999969899999999999999999999987448777877763365546884145899999878888176411999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999989999988620895339989999999999999875179989089999996227887786227999999
Q 000772 786 LIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIW 865 (1293)
Q Consensus 786 LItQRln~~~~~~le~ai~rfEs~dl~~iveLe~ll~v~r~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~ 865 (1293)
||+||+|++|+++||+||+||||+|||||||||++|+++|+||+||||||+|||||+||+|||||+| ||+||||+|||
T Consensus 767 LI~QRln~~~~~~Le~aI~rFEs~dL~~iveLe~ll~i~r~tH~LLse~l~Ld~F~~ml~Ean~~vs--s~~gRIt~hv~ 844 (1253)
T 3p8c_A 767 LITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVS--APYGRITLHVF 844 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHTTCSS--SSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC--CCCHHHHHHHH
T ss_conf 9999999999999999999985258730999999999999999999971798989999998606888--74026999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99852112332235567641038988667788999999987411131426999999870037877802699999972899
Q 000772 866 SEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSR 945 (1293)
Q Consensus 866 ~eL~~Df~pNy~yn~~T~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~ly~~F~G~pH~~ai~RLLg~~ 945 (1293)
|||+|||+||||||++||||||++.+|+++++|+++|+++|+|+||||+||+||++++++|++|||.|||+||||||||+
T Consensus 845 ~eL~~Df~PNy~yn~~T~RFvr~~~~~~~~~~R~~~P~~~~~~~~Gsk~ln~A~~~~~~~~~~FvG~~H~~ai~rLlg~~ 924 (1253)
T 3p8c_A 845 WELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQ 924 (1253)
T ss_dssp HHHHHTHHHHEEEETTTTEEEECCGGGCCCCCCCCCCCCCGGGTTSSHHHHHHHHHHGGGGGSCBCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 99860324441103765433378766567556788999760130044999999999975355655848999999992888
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 9799999999999997773-5899999997378544866777660558999999714366-6412799998999776699
Q 000772 946 SLPWLIRALLDHMSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGT-KSELKAEVLHGIKEIGSVL 1023 (1293)
Q Consensus 946 gia~v~~ell~~~~~~i~~-~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~L~~~~-~~dlk~~v~q~frElGN~i 1023 (1293)
||||+++||+++++++|++ ++|||++++++|||+||||++|||++|||+||++||+|++ |+|||++|||+|||+||+|
T Consensus 925 ~l~~vi~ell~~~~~~i~~~~~~yv~~l~~~mPk~~klP~~dyGs~G~~~~y~~~L~~~~~y~dlk~ev~q~fReiGN~i 1004 (1253)
T 3p8c_A 925 GIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAI 1004 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCSBCCCCCGGGCHHHHHHHHHHHTHHHHSCTTTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 76999999999999999998999999999739552079975578648999999987657308377999999999986899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCC----CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999998852354688875204468877988---8554----4578999813444567778652299999983143666
Q 000772 1024 YWMGLLDIVLREVDTTHFMQTAPWLGFLPGAD---GQIS----YHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMS 1096 (1293)
Q Consensus 1024 ~~~~lle~aL~qee~~d~~~aaPf~gi~P~~~---~~~~----~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~ 1096 (1293)
+||++||++|+|+|++||+|||||+||+|+++ ||++ ++++.||+|+. .+++++++|++. | +
T Consensus 1005 ~f~~lLd~aL~q~e~~~~~~aaPf~gi~P~~~~~~~~~~~~k~~~l~~k~~~~~------~v~~~~~~~~~~---q---~ 1072 (1253)
T 3p8c_A 1005 LFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLH------LVPLIERLGTPQ---Q---I 1072 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCTTCCHHHHHHHHHHHTGGGC------HHHHHHHHSCHH---H---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC------CCHHHHHCCCHH---H---H
T ss_conf 999999998638999999961661478798777764351034678885257631------015776228688---9---9
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHCEECCCCCCCCCCCC
Q ss_conf 86668756432003640-179999999999970048865468-9987033134620766442120012201799999854
Q 000772 1097 KQAEAADLLYKANMNTG-SVLEYALAFTSAALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNH 1174 (1293)
Q Consensus 1097 ~~A~~~dll~k~rl~~g-sife~~L~~~~~~L~~~~~~W~g~-p~nGv~~id~~~eFhRlwSalQf~~c~p~~~~e~~~~ 1174 (1293)
.+|+|||+||||||||| |+||++|+|+|++|++ ++|+|| |+|||||||||+|||||||||||+||+|++++|+++|
T Consensus 1073 ~~a~eadlL~k~rl~~glSife~~L~~~~~~L~~--~~W~g~~P~nGvi~id~~~eF~RlwSalQf~~c~p~~~~e~~~~ 1150 (1253)
T 3p8c_A 1073 AIAREGDLLTKERLCCGLSMFEVILTRIRSFLDD--PIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVE 1150 (1253)
T ss_dssp HHHHHHHHHHHCCGGGTEESHHHHHHHHHTTCCS--TTTTCSCCTTSSCCSSBCCSHHHHHHHHHHHHHSCCCTTSCCHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 9998877875665504624999999999987271--12579999997574000016999999877762156788877679
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32478553247899997322333322241012344454101367877789877768899999999999976789999751
Q 000772 1175 KVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKA 1254 (1293)
Q Consensus 1175 e~fGDGl~WaGctiI~LLgQq~rFe~lDF~yHiL~v~~~d~~~~~~~~~~p~~~~~l~~~v~~~r~~~~LN~~iFsiL~~ 1254 (1293)
|+|||||+|||||||+|||||+|||+||||||||||+++|+||+. +.|++|++||+||||||+|||||||||++
T Consensus 1151 e~FGDgl~WaGctiI~LLGQq~rFE~lDF~YHiL~V~~~d~k~~~------~~g~~l~~~~~~~r~~~~LN~~iFs~L~~ 1224 (1253)
T 3p8c_A 1151 QCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEI------IKNVPLKKMVERIRKFQILNDEIITILDK 1224 (1253)
T ss_dssp HHHBTHHHHHHHHHHHHTTCHHHHHHHCHHHHHHHHHHHHCCCCE------ETTEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 884675201178999983306662476569888688874146655------56754999999999999988799999998
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCC---CCCCHHHHH
Q ss_conf 08898600111015899743455---787634641
Q 000772 1255 RCPLEDKTACAIKQSGAPLHRIK---FENTVSAFE 1286 (1293)
Q Consensus 1255 ~~p~~d~~~~~~~~~~~~~~~~~---~~~~~s~~~ 1286 (1293)
|||..|.. +.|++||| ||+|+|.+.
T Consensus 1225 ~~~~~~~~-------~~~~~~vr~f~pp~~~~~~~ 1252 (1253)
T 3p8c_A 1225 YLKSGDGE-------GTPVEHVRCFQPPIHQSLAS 1252 (1253)
T ss_dssp HTC----------------CCCCCCCCCCCTTC--
T ss_pred HCCCCCCC-------CCCCCCCCCCCCCCCCCCCC
T ss_conf 65898766-------77533301479997523356
No 2
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=49.70 Aligned_cols=800 Identities=15% Similarity=0.190 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CC----------------------CCCCCCCCCCCCCC----HHHHHHHHHH
Q ss_conf 799999999999988999999840311-10----------------------11578988889880----6889989776
Q 000772 58 DTKALNQLNTLIQEGKEMASVLYTYRS-CV----------------------KALPQLPNSMKHSQ----ADLYLETYQV 110 (1293)
Q Consensus 58 E~e~~~~ln~vL~eg~~~l~~LytYRs-cs----------------------raIpqaisn~qpn~----~eiye~t~~v 110 (1293)
+.++-.++-.+-+.|++++.-||+-+- |+ |-.|......+... .....+..+.
T Consensus 10 ~~KlaEkl~iLn~r~~g~LtrlYnikk~~~~~k~kp~fl~dk~~e~~iK~i~kKFP~id~~~~~~~~~~~~~~~~ei~~~ 89 (1128)
T 3p8c_B 10 QQKLAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRNNNQQLAQLQKEKSEILKN 89 (1128)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSCGGGTCTTTHHHHHHHHHHTTCCC----CCTTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 65366787569977778999999998750599878876771326999999970499987523421226788779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC-CCCHHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 5227998899999999999999999986235110037-88457999---9999998998603333568877760367866
Q 000772 111 LDLEMSRLREIQRWQASAASKLAADMQRFSRPERRIN-GPTITHLW---SMLKLLDVLVQLDHLKNAKASIPNDFSWYKR 186 (1293)
Q Consensus 111 L~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~-~~se~~L~---~La~iLdf~l~lD~LK~~kasIqNDFS~YRR 186 (1293)
|.|...-+.+.|+|++.+.+.+-..-...++.+-..+ .-...+|. +++++.-|+-++++.|+.- ..|..
T Consensus 90 L~~yY~tf~Dl~dfrd~~~elL~~i~s~~~~ldi~~N~~lT~~yLdL~v~yvkv~lllsri~drK~ll-------~lyn~ 162 (1128)
T 3p8c_B 90 LALYYFTFVDVMEFKDHVCELLNTIDVCQVFFDITVNFDLTKNYLDLIITYTTLMILLSRIEERKAII-------GLYNY 162 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHH
T ss_conf 98999999999999999999999865045664123489999999999999999999998503199999-------99999
Q ss_pred HHHHHHHCCCCCHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH------HHHCCCCC
Q ss_conf 675532103894227987611-00220121369998999998720346776668889999999998------30014466
Q 000772 187 TFTQVSVQWQDTDSMREELDD-LQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVE------SLELDFAL 259 (1293)
Q Consensus 187 a~sr~~~~~~d~~~i~~E~~~-LSlFlA~~~pil~~L~~~~~~i~k~l~~~~~ed~L~tianvC~~------mlE~~~y~ 259 (1293)
+....+.. .+. .-++ -+|+..+ .+-++.|+++..-+++ .....|..+.-++.. -.-+...+
T Consensus 163 a~~~~~~~-~ep-----sy~RL~q~i~~y-d~PlkkL~eef~p~~~-----~I~~aL~Sl~~~~~~r~~~a~~wR~~~~L 230 (1128)
T 3p8c_B 163 AHEMTHGA-SDR-----EYPRLGQMIVDY-ENPLKKMMEEFVPHSK-----SLSDALISLQMVYPRRNLSADQWRNAQLL 230 (1128)
T ss_dssp HHHTTSSS-CCT-----THHHHHHHHHHT-SSHHHHHHHHTTTTHH-----HHHHHHHGGGGTHHHHSCCHHHHHHTTTT
T ss_pred HHHHHCCC-CCC-----CHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHHHHHHCCCC
T ss_conf 99997388-998-----779999999984-1388888788877788-----99999998589998716749988636867
Q ss_pred C----C---------CCCHH-H------HEEECEEEEEECCCCCCHHHHHH-HHCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 8----7---------43111-1------22402333462388885035786-7323478864211995146898656978
Q 000772 260 L----F---------PERHI-L------LRVLPVLVVLATSSEKDSESLYK-RVKINRLINIFKSDPVIPAFPDLHLSPA 318 (1293)
Q Consensus 260 ~----p---------~ek~~-l------LRVM~~~iiL~D~v~~~~~ni~K-ri~l~r~~kifK~~pVVPlfGDm~i~~~ 318 (1293)
+ | ++... + -|-..++. |.-|.. ... .-.++-....+++..|+|||+|-.+.+-
T Consensus 231 Sl~~~P~~~~~pa~~d~~~~ells~e~m~~WIifg~-L~cp~~-----L~~~~~~~~l~~~aL~~~~vl~LfRdevi~iH 304 (1128)
T 3p8c_B 231 SLISAPSTMLNPAQSDTMPCEYLSLDAMEKWIIFGF-ILCHGI-----LNTDATALNLWKLALQSSSCLSLFRDEVFHIH 304 (1128)
T ss_dssp CSSSSGGGTTSCCCCTTHHHHHSCHHHHHHHHHHHH-HHTTHH-----HHHCHHHHHHHHHHHTTCSEEEEETTEEEEHH
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEE-EECCHH-----HCCCHHHHHHHHHHHCCCCEEEEECCEEEEHH
T ss_conf 876781651786565522088873989988780211-224434-----32381399999999514977877422003298
Q ss_pred HHHHHHCHHHHHHHH-HCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCH
Q ss_conf 999631134442211-0013568999999940010000046876303567855879999999986688873-11797614
Q 000772 319 AILKELSMYFQKFSA-QTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLL-KSTDNADI 396 (1293)
Q Consensus 319 s~ik~~~~y~~~~~~-~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~h~~~~~~la~~~n~~~~~-~~~~~~d~ 396 (1293)
.+++. +++..+. +.+.. + .+|+.+ + -+.+-+.+..|...|+...-+ ++... .+.++.-.
T Consensus 305 ~~~q~---~~~s~K~y~K~v~------~--ikE~~~----~-A~~~a~~~HreRR~~LR~~Lk---el~~i~~DqPgLLg 365 (1128)
T 3p8c_B 305 KAAED---LFVNIRGYNKRIN------D--IRECKE----A-AVSHAGSMHRERRKFLRSALK---ELATVLSDQPGLLG 365 (1128)
T ss_dssp HHHHH---HHTTCGGGTTHHH------H--HHHHHH----H-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCGGGGT
T ss_pred HHHHH---HHHHHHHHHHHHH------H--HHHHHH----H-HHHHCCHHHHHHHHHHHHHHH---HHHHHHHCCCCCCC
T ss_conf 99999---9999876425699------9--999999----9-998475334999999999999---99999704975457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHH--HHHHHHHH
Q ss_conf 5668643313899999989876658999987752204688999999894347773035888860799788--99999999
Q 000772 397 EWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEE--RKALVELV 474 (1293)
Q Consensus 397 ~~~~~~~~~~~~~~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E--~~alveiI 474 (1293)
+ ...+++.|+-+ -.+-.-|=+-|-.+ .+ .+ +++| -.-+.|+|
T Consensus 366 -P-------K~~~v~~aLs~-------ArdEV~W~~rH~~~-~p---kk-----------------~~~d~~D~~i~eLL 409 (1128)
T 3p8c_B 366 -P-------KALFVFMALSF-------ARDEIIWLLRHADN-MP---KK-----------------SADDFIDKHIAELI 409 (1128)
T ss_dssp -T-------THHHHHHHHHH-------HHHHHHHHHHHHHH-SC---CS-----------------STTTTCCTTHHHHH
T ss_pred -H-------HHHHHHHHHHH-------HHHHHHHHHHCCCC-CC---CC-----------------CCCCCHHHHHHHHH
T ss_conf -0-------58999999999-------99999999970566-88---88-----------------83321031489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCC
Q ss_conf 99999999775534999999999999999999999899999998304213999999998977532107999903431012
Q 000772 475 SYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMH 554 (1293)
Q Consensus 475 amIK~l~~ll~~~e~~~~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~Dw~~g~~~~~~~~~~~~ 554 (1293)
-.+--+..++.+...++...--.++.. |--..|.+.++....=..+.+.|++++-.+... -. +....
T Consensus 410 f~m~eLr~Lv~k~~~vIqrYy~qyLs~----~Da~~L~~~iq~l~~~p~ees~i~ss~~~tl~~----L~-~~q~e---- 476 (1128)
T 3p8c_B 410 FYMEELRAHVRKYGPVMQRYYVQYLSG----FDAVVLNELVQNLSVCPEDESIIMSSFVNTMTS----LS-VKQVE---- 476 (1128)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHH----THHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHT----CC-HHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CC-HHHHC----
T ss_conf 999999999999999999999999853----237889999987406988899999999999871----89-65404----
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHH-H
Q ss_conf 357788885456777797766799999999866239975556886678899999110799999998522458640817-7
Q 000772 555 HVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYT-A 633 (1293)
Q Consensus 555 ~~~~~~~~~~~~~r~v~Ps~tQL~ml~~li~~~~~~~~~~k~~g~f~~~~~~l~~~~~~~i~~F~~~s~~~~~LL~~s-~ 633 (1293)
++ ..+ .-+.-.|.-+|.+-.- |.. +..+.=.+...|-.+.+...||..+.|.- +
T Consensus 477 ~~------~~~-----Df~~lRlDW~Rlqa~~--S~~------------~~~l~l~~~~~l~~~mN~~~fhsk~VD~lde 531 (1128)
T 3p8c_B 477 DG------EVF-----DFRGMRLDWFRLQAYT--SVS------------KASLGLADHRELGKMMNTIIFHTKMVDSLVE 531 (1128)
T ss_dssp TT------CCC-----CCHHHHHHHHHHHHHH--HST------------TCSSCGGGCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CC------CCC-----CCHHHHHHHHHHHHHH--HCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47------888-----8289999999999999--713------------4676731007899998899999988855999
Q ss_pred HHHHHCCCCCHHHHHHHHC-C-CCEEECC----CCCCCHHHHHHHHHHCCCCCHHHHHCCC---CCCCCHHHHHHHHHHH
Q ss_conf 8986203321035555313-6-8812136----7676107989988620884102311022---1113157999999985
Q 000772 634 TVSTLTDLGFLWFREFYLE-S-SRVIQFP----IECSLPWMLVDHVLESQNAGLLESVMMP---FDIYNDSAQQALVVLK 704 (1293)
Q Consensus 634 tl~~~~DLS~LWfREfyLE-l-~~~iQFP----Ie~SLPWILtdhiL~s~~~~l~E~ilyP---LdlYNDAA~~AL~~lk 704 (1293)
.|++-||||.|||-.-.+| + .+..++| =-++.|-|...+.-.. .+ +.| --|=++|..+|-.-
T Consensus 532 ~L~e~sdLs~l~FY~~~~~~~F~~cl~~p~q~ry~~af~~ics~F~~~~-h~------~cPEE~~~i~~~sl~~~~~f-- 602 (1128)
T 3p8c_B 532 MLVETSDLSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFMSCT-HE------LCPEERHHIGDRSLSLCNMF-- 602 (1128)
T ss_dssp HHHHHHCCGGGGGCHHHHHHHHHHHHHSHHHHTTTTHHHHHGGGGGGGC-CT------TCGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHHCCHHHEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHCCC-CC------CCHHHHHHHHHHHHHHHHHH--
T ss_conf 9998455322210158999999997357432018999999971212047-86------68667999988999999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCC-------CCCCCCCHH------
Q ss_conf 43438999998852799999---9999999999998763210----492010112478-------875569702------
Q 000772 705 QRFLYDEIEAEVDHCFDIFV---SRLCETIFTYYKSWAASEL----LDPSFLFSSDNG-------EKYSVQPMR------ 764 (1293)
Q Consensus 705 ~qfLYDEIEAEvnLCFDqlv---~kLsd~iF~~yK~~Aas~l----Ld~~f~~~~~~~-------~~~~~~~~R------ 764 (1293)
.|||..++.-|...+. ..|++|.- -|. ||..+ ..|.-+..-..| +.-..+.+|
T Consensus 603 ----Le~ia~~~~~~i~~i~~~~~~l~~qLl--P~~-aA~~i~~~~~~k~kk~~~~k~~~~~~~PG~ES~r~~r~~~t~~ 675 (1128)
T 3p8c_B 603 ----LDEMAKQARNLITDICTEQCTLSDQLL--PKH-CAKTISQAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNL 675 (1128)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHTTS--GGG-GHHHHHHHTTC--------------CCTTGGGCCSCTTSCCHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHCC--HHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf ----999999999999999999866876018--799-9999999998751355676677788999821456675878658
Q ss_pred --HHH--------HHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf --899--------863036123351211224999999999999899999886--20895339989999999999999875
Q 000772 765 --LSA--------LFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRF--ESQDLCAIVELEKLLDILKHTHELLS 832 (1293)
Q Consensus 765 --y~~--------LL~QrhvqLLGRsIDL~~LItQRln~~~~~~le~ai~rf--Es~dl~~iveLe~ll~v~r~TH~LLs 832 (1293)
... +=..+.+.+.-..+--+--+.|++-..+++.+-..+. | +++++.-=-|++..|..-=-.=+.+.
T Consensus 676 dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~-~~~~~~~i~RPSell~~l~a~m~vlq~~e 754 (1128)
T 3p8c_B 676 DKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKSIVGMTM-YNQATQEIAKPSELLTSVRAYMTVLQSIE 754 (1128)
T ss_dssp HHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHHHHHHHHHHHHHTT-CBTTTTBCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986568871688635561999999999999999999854-68876666886999999999999999899
Q ss_pred CCCCCCCHH----HHHHHHHCCCCCCCCCHHHH---HHHHHHHHHCCC------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 179989089----99999622788778622799---999999852112------33223556764103898866778899
Q 000772 833 KDLSIDSFR----LILNEMQENISLVSFSSRLA---SQIWSEMQSDFL------PNFILCNTTQRFIRSSKVPLASVQKP 899 (1293)
Q Consensus 833 e~L~LdpF~----~ml~Ean~~~s~~s~~gRIt---~hv~~eL~~Df~------pNy~yn~~T~RFvrs~~~~~~~~~r~ 899 (1293)
.+..+|-=. .++.+.+..++ +|.-| .=.-|.+ |++ ++.+|.-+-+.||..+. + +
T Consensus 755 ~~v~iDvt~~i~~vLLqqtq~~D~----~G~~tit~~yt~WYl--e~llr~~s~~~iv~sp~~~~Fvs~~~------~-g 821 (1128)
T 3p8c_B 755 NYVQIDITRVFNNVLLQQTQHLDS----HGEPTITSLYTNWYL--ETLLRQVSNGHIAYFPAMKAFVNLPT------E-N 821 (1128)
T ss_dssp GTSSCCHHHHHHHHHHHTTSSBCT----TSCBCHHHHHHHHHH--HTHHHHHHTTSEEEETTTTEEEECSS------S-C
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHH--HHHHHHCCCCCEEECCHHHHHHCCCC------C-C
T ss_conf 881412999999999982775103----798507999999999--99997546786687547887646898------7-8
Q ss_pred CCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999874111314269999998700378778026999999728999799999999999997773589999999737854
Q 000772 900 SVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKS 979 (1293)
Q Consensus 900 ~~P~~~~~~l~Gsk~Ln~A~~~i~~ly~~F~G~pH~~ai~RLLg~~gia~v~~ell~~~~~~i~~~~~~v~~l~~~mP~~ 979 (1293)
.+|- .+ + .|.-...++|+|+|+|+-|+-.+-+.|+.++-+.++.++-.|..=++++
T Consensus 822 ~~~f-~A-----------------E---~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~~N~~~L--- 877 (1128)
T 3p8c_B 822 ELTF-NA-----------------E---EYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVL--- 877 (1128)
T ss_dssp CCCS-CT-----------------H---HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH---
T ss_pred CCCC-CH-----------------H---HCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 8985-87-----------------7---6189999999999967456899999999999999999999999839999---
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 486677766055899999971436664127999989997766999999999885235
Q 000772 980 IGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREV 1036 (1293)
Q Consensus 980 ~~lp~~dyG~~g~~~~~~~~L~~~~~~dlk~~v~q~frElGN~i~~~~lle~aL~qe 1036 (1293)
...+.-+..+..+ .+.|+-+. | -..+++-.-.+|+++-|=.++-.||+..
T Consensus 878 -~~lr~~~~~~~~m---~~~lk~l~--~-~d~~l~r~~~iG~iL~FR~ll~eAl~~V 927 (1128)
T 3p8c_B 878 -TQMRTSFDKPDQM---AALFKRLS--S-VDSVLKRMTIIGVILSFRSLAQEALRDV 927 (1128)
T ss_dssp -HHHHHCTTCHHHH---HHHHTTCC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHCCCHHHH---HHHHHHHC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999855888999---99999601--2-9899999999999999999999999999
No 3
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=1.00 E-value=1 Score=25.37 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 04886546899870331346207664421200122017999998543247855324789999732233332224101234
Q 000772 1129 KYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1208 (1293)
Q Consensus 1129 ~~~~~W~g~p~nGv~~id~~~eFhRlwSalQf~~c~p~~~~e~~~~e~fGDGl~WaGctiI~LLgQq~rFe~lDF~yHiL 1208 (1293)
.+|..|...||+. --.||+|-++| +|..+.- -..+|-||||.+ .+-||+-.|-
T Consensus 79 P~rg~~~~~~ptd-------P~iYR~yE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~ 131 (156)
T 1dw9_A 79 PLRGCIDDRIPTD-------PTMYRFYEMLQ-VYGTTLK---ALVHEKFGDGII----------------SAINFKLDVK 131 (156)
T ss_dssp CCCCCCSSSSCCS-------HHHHHHHHHHH-HHHHHHH---HHHHHHTCSEEE----------------EEEEEEEEEE
T ss_pred CCCCCCCCCCCCC-------CEEHHHHHHHH-HHHHHHH---HHHHHHCCCCEE----------------EEEEEEEEEE
T ss_conf 9678899989999-------81023899998-7568999---999877076567----------------6655004667
Q ss_pred HHHHHHC
Q ss_conf 4454101
Q 000772 1209 NVAEVEA 1215 (1293)
Q Consensus 1209 ~v~~~d~ 1215 (1293)
|+..-+|
T Consensus 132 k~~dp~G 138 (156)
T 1dw9_A 132 KVADPEG 138 (156)
T ss_dssp EEECTTS
T ss_pred EECCCCC
T ss_conf 6218998
No 4
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=19.58 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9885279999999999999
Q 000772 714 AEVDHCFDIFVSRLCETIF 732 (1293)
Q Consensus 714 AEvnLCFDqlv~kLsd~iF 732 (1293)
-|.|+||.|+.|-+=.+.-
T Consensus 76 VEfniCfNQlaY~l~A~~v 94 (183)
T 2pfc_A 76 VELILCFNQLAYSAFAPAV 94 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHH
T ss_conf 6422227889999999998
No 5
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=1.00 E-value=1 Score=17.73 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=7.9
Q ss_pred CCCCCCCHHHHHHH-HHHH
Q ss_conf 88777603678666-7553
Q 000772 174 KASIPNDFSWYKRT-FTQV 191 (1293)
Q Consensus 174 kasIqNDFS~YRRa-~sr~ 191 (1293)
=|...+=|+.++-+ +..+
T Consensus 38 yP~~~~iF~af~~~p~~~v 56 (237)
T 3uf7_A 38 YPPQKDVFNAFRFTELGDV 56 (237)
T ss_dssp ESCGGGTTHHHHHSCGGGC
T ss_pred CCCHHHHHHHHHCCCCCCE
T ss_conf 1986999999726585661
No 6
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=1.00 E-value=1 Score=17.71 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=6.9
Q ss_pred CCCCCCCHHHHHHH-HHHH
Q ss_conf 88777603678666-7553
Q 000772 174 KASIPNDFSWYKRT-FTQV 191 (1293)
Q Consensus 174 kasIqNDFS~YRRa-~sr~ 191 (1293)
-|.-.+=|++++.+ +..+
T Consensus 38 ~P~~~~iF~a~~~tp~~~v 56 (223)
T 3fci_A 38 YPPPHQVFTWTQMCDIKDV 56 (223)
T ss_dssp ESCGGGTTGGGTSSCGGGC
T ss_pred CCCHHHHHHHHHCCCCCCE
T ss_conf 3987899998742684624
No 7
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=1.00 E-value=1 Score=17.42 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=3.7
Q ss_pred CCCCCCHHHHH
Q ss_conf 87776036786
Q 000772 175 ASIPNDFSWYK 185 (1293)
Q Consensus 175 asIqNDFS~YR 185 (1293)
|.-.+=|++++
T Consensus 45 P~~~~iF~af~ 55 (232)
T 3tr7_A 45 PPQKDIFNALK 55 (232)
T ss_dssp SCGGGTTHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 88889999971
No 8
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=1.00 E-value=1 Score=16.49 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 3787780269999997289997999999999999977735899999997378544866777660558
Q 000772 926 HSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGC 992 (1293)
Q Consensus 926 y~~F~G~pH~~ai~RLLg~~gia~v~~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~ 992 (1293)
.....|..+.+.|+++|.|||+-.+ ..+..++.++ .++||. --..=||.||+
T Consensus 18 ~~~~~~~~~w~~I~~~l~yq~~~~~---------~f~~~l~~~~----~~iPkk--n~ili~GPPGt 69 (212)
T 1tue_A 18 CSKIDEGGDWRPIVQFLRYQQIEFI---------TFLGALKSFL----KGTPKK--NCLVFCGPANT 69 (212)
T ss_dssp HHTSCSCCCSHHHHHHHHHTTCCHH---------HHHHHHHHHH----HTCTTC--SEEEEESCGGG
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCHH---------HHHHHHHHHH----HCCCCC--CEEEEECCCCC
T ss_conf 9872479999999999987696789---------9999999998----629865--27999889998
No 9
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=1.00 E-value=1 Score=13.88 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99988527999999
Q 000772 712 IEAEVDHCFDIFVS 725 (1293)
Q Consensus 712 IEAEvnLCFDqlv~ 725 (1293)
+-.+.|.|||+|.|
T Consensus 112 ~i~kIN~~FD~fly 125 (136)
T 1yku_A 112 LVKKINQFFDHLIY 125 (136)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 10
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=1.00 E-value=1 Score=13.71 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCEEE
Q ss_conf 889888865568962175
Q 000772 16 FSLEDEQPEVQGPSVLVS 33 (1293)
Q Consensus 16 ~~l~d~qP~ie~~~~~l~ 33 (1293)
|-+|||.|||.+--++++
T Consensus 1 fhvpddrpcinpgrcplv 18 (53)
T 4a94_C 1 FHVPDDRPCINPGRCPLV 18 (53)
T ss_dssp --CCCCBCCSSCCCCTTS
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 978878765388757645
Done!