Query 000773
Match_columns 1293
No_of_seqs 342 out of 5038
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 16:22:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000773.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_544-548//hhsearch_pdb/000773hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 650.8 44.2 214 694-932 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 583.3 51.9 214 694-932 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 449.1 30.4 188 722-934 371-560 (607)
4 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 441.5 29.3 202 722-946 283-486 (538)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 439.1 29.9 188 722-934 301-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 431.0 31.8 199 1-234 46-297 (670)
7 2iw3_A Elongation factor 3A; a 1.0 1 1 430.6 31.7 169 1-234 463-634 (986)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 424.3 29.4 201 721-946 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 351.1 28.4 197 720-932 597-897 (916)
10 2r6f_A Excinuclease ABC subuni 1.0 1 1 333.3 30.4 196 721-932 638-937 (972)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=650.81 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=174.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++|+|+++.++.. .+..+|+|+|++++|||++||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEET
T ss_pred EEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEH
T ss_conf 18999879857999----------988212451699889899999899998199999999568638--997899999986
Q ss_pred CH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 90---0013448997269988999999999999997037889999999999999999839943-------2201126999
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 843 (1293)
++ ..+++.++||+|++.++.. |+|||+.|.. .+.+.++++ +.+.++..++.+ -.|+.+|..
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~- 1214 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDR- 1214 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTT-
T ss_pred HHCCHHHHHHHEEEECCCCEEECC-CHHHHHHCCC---CCCCCCHHH----HHHHHHHHCCHHHHHCCCCCCCCEECCC-
T ss_conf 549999998545998789973272-3999974549---999999999----9999998298499971767899982388-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 88779889999999999951997789959999999999999999999987389989999269989999998575210249
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||||+++|+||+||||||+||+.++..|++.|++.. +|+|+|+++|+++ ....+|+|++|. +
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEE-C
T ss_conf 91569999999999999971799899968111578999999999999973-9998999606899--999699999998-9
Q ss_pred CEEEEECCC
Q ss_conf 689993799
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 g~~~~~g~~ 932 (1293)
|+++.+|++
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
T ss_conf 899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=583.32 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=167.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++++|+++..+. .....+|+|+|+.++|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 1030 ~i~~~~v~~~y~~----------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPT----------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSC----------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCT
T ss_pred CEEEEEEEEECCC----------CCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 5799998997799----------9987002030599769988999889999789999999468678--997798999980
Q ss_pred CH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 90---00134489972699889999999999999970378899999999999999998399-------432201126999
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-------ESLKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~ 843 (1293)
.. ...++.++||+|++.++ ..|++||+.+... ....+.++ +.+.++..++ .+-.|+.+|..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~---~~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDN---SRVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCS---SCCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred CCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCC---CCCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCC-
T ss_conf 0078999970268987787406-6669999746687---78999999----9999998395999972704245611788-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 88779889999999999951997789959999999999999999999987389989999269989999998575210249
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||+|+++|++|+|||||+|||+.++..+.+.+++. .+|+|+|+++|+++ .+ ..+|++++|. +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHH-HH-HCCCEEEEEE-C
T ss_conf 8933899999999999997499999986875557999999999999986-79998999955879-99-8099899998-9
Q ss_pred CEEEEECCC
Q ss_conf 689993799
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 g~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=449.08 Aligned_cols=188 Identities=24% Similarity=0.278 Sum_probs=154.7
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 11010456616839999979996099999989699999814679999692179000134489972699889999999999
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL 801 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 801 (1293)
.|+++++.+++||+++|+||||||||||+++|+|...+ .+|+|.+ ...++|++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHH
T ss_conf 89935153279989999999998999999999669888--8628999----------02799980576677898499999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99997037889999999999999999839943220112699988779889999999999951997789959999999999
Q 000773 802 IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881 (1293)
Q Consensus 802 ~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~ 881 (1293)
....... ......++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 7531258-------7789999999987699337549922-----379999999999999974899899968744789999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEECCCCC
Q ss_conf 999999999987-38998999926998999999857521024-968999379998
Q 000773 882 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGR 934 (1293)
Q Consensus 882 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~g~~~~~g~~~~ 934 (1293)
+..+.+.|++++ +.|.|||+++|++. .+...+|++++|.+ .|.+...|++.+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 999999999999747989999909899-999869999999598306974289899
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=441.45 Aligned_cols=202 Identities=22% Similarity=0.241 Sum_probs=157.4
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 11010456616839999979996099999989699999814679999692179000134489972699889999999999
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL 801 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 801 (1293)
.|+.+++.+++||+++|+||||||||||+++|+|..++ .+|+|.+++. .++|++|+.......||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE---------EEEEECHHCCCCCCCCHHHHH
T ss_conf 99826646889989999999999899999999578889--9818999984---------567614000345477799999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99997037889999999999999999839943220112699988779889999999999951997789959999999999
Q 000773 802 IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881 (1293)
Q Consensus 802 ~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~ 881 (1293)
.+... . ... . ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+
T Consensus 352 ~~~~~-~-~~~-~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASK-D-ALS-T---SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCS-S-TTC-T---TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHHHH-H-CCC-H---HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 87553-1-121-1---69999999987599778628932-----279999999999999970899899969865799999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999999999873-8998999926998999999857521024-968999379998916899999829
Q 000773 882 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGRNSHKVIEYYEAI 946 (1293)
Q Consensus 882 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~g~~~~~g~~~~~~~~~~~~f~~~ 946 (1293)
+..+.+.|+++++ .|.|||+++|++. ++...+|++++|.. .|.....+++........+++...
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999999738989999958899-999968999999698510116798477887888887416
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=439.11 Aligned_cols=188 Identities=25% Similarity=0.293 Sum_probs=153.6
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 11010456616839999979996099999989699999814679999692179000134489972699889999999999
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL 801 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 801 (1293)
.|+++++.+++||++||+||||||||||+++|+|..++ .+|+|.+ ...++|++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHH
T ss_conf 99907441289989999889999999999999679989--9718998----------74699982677678888599999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99997037889999999999999999839943220112699988779889999999999951997789959999999999
Q 000773 802 IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881 (1293)
Q Consensus 802 ~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~ 881 (1293)
........ . ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+
T Consensus 369 ~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHHHCCCC----C---HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 86403688----7---89999999997499156539944-----489999999999999972899899939801089999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEECCCCC
Q ss_conf 9999999999873-8998999926998999999857521024-968999379998
Q 000773 882 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGR 934 (1293)
Q Consensus 882 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~g~~~~~g~~~~ 934 (1293)
...+.+.|+++++ .|.|||+++|++. ++...+|++++|.+ .|+++..|++.+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=430.97 Aligned_cols=199 Identities=22% Similarity=0.253 Sum_probs=138.9
Q ss_pred CEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----EEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9898379999968999---------------------898289899981----357999888406876655417866544
Q 000773 1 MTLLLGPPSSGKTTLL---------------------LALAGKLNRDLK----VRGEITYNGYRLNEFVPQKTSAYISQN 55 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~inG~~~~~~~~~~~~~yv~Q~ 55 (1293)
+++|+||||||||||+ +.+.|...|+.. ..|.+.++|.+.... .++.++|++|.
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~ 124 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEI 124 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC------CCBHHHHTTC
T ss_pred EEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHHHCC-CHHCEEEEECH
T ss_conf 99998999999888715101232111000110024455530345677563213564157447201025-50000465112
Q ss_pred CCC-------------------CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 465-------------------7888989999999650288752224468569865208997267879998742002231
Q 000773 56 DVH-------------------VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116 (1293)
Q Consensus 56 d~l-------------------~~~lTVrE~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1293)
..+ ++.+||+|++.+....... . .+.... . ....+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-~----------~~~~~~---~-----------~~~~~~ 179 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-E----------KEAQIA---R-----------LILREI 179 (670)
T ss_dssp C-------------------------CC---------------------------------------------------C
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-H----------HHHHHH---H-----------HHHHHH
T ss_conf 56677777531111234443334578599999975203643-1----------456778---8-----------889999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0019999999299544-67533788653366233114689998746981--86763798541289999999999999761
Q 000773 117 SLITDYTLKILGLDIC-KDTIVGDEMNRGISGGQKKRVTTGEMIVGPTK--TLFMDEISTGLDSSTTYQIVKCLQQIVHV 193 (1293)
Q Consensus 117 ~~~v~~~l~~lgL~~~-~~T~VG~~~~~gLSGGQKrRlsIA~aL~~~p~--IllLDEPTSgLD~~ta~~i~~~L~~l~~~ 193 (1293)
.. .-.+++.+||.+. .+..+++ |||||||||+|||||+.+|+ +++|||||+|||+.++..+++.|+++++
T Consensus 180 ~~-~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~- 252 (670)
T 3ux8_A 180 RD-RLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD- 252 (670)
T ss_dssp HH-HHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-
T ss_pred HH-HHHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf 99-998999759843441497001-----89999999999999962899878999798568999999999999999997-
Q ss_pred CCCEEEEEECCCCHHHHHHCCCEEEE------CCCEEEEECCHHHHH
Q ss_conf 79889999527984699720026885------599089876710499
Q 000773 194 TDATILMSLLQPAPETFDLFDDIILL------SEGQIVYQGPRERVL 234 (1293)
Q Consensus 194 ~g~tvI~ti~qp~~~~~~lfD~I~iL------~~G~iv~~G~~~~l~ 234 (1293)
.|.|+|+..|.. . ....+|++++| .+|++++.|+++++.
T Consensus 253 ~g~tvi~vtHd~-~-~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 253 LGNTLIVVEHDE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp TTCEEEEECCCH-H-HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCCEEEEEECCH-H-HHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 499899995787-9-99629989994466656698899740899986
No 7
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=430.63 Aligned_cols=169 Identities=19% Similarity=0.254 Sum_probs=131.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 98983799999689998982898999813579998884068766554178665444-65788898999999965028875
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQND-VHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d-~l~~~lTVrE~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+| |++ +|.+... +..++|++|+. .+++.+||.|++.+ ...+
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~--- 523 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG--- 523 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC---
T ss_conf 899999999879999999948---------986--7976635---41699973564324557809999998--6127---
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 222446856986520899726787999874200223100199999992995-4467533788653366233114689998
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~T~VG~~~~~gLSGGQKrRlsIA~a 158 (1293)
. ...++.+++.+||. +..+..+++ ||||||||++||++
T Consensus 524 ---~---------------------------------~~~v~~~L~~lgL~~~~~~~~~~~-----LSGGqkQRvaLArA 562 (986)
T 2iw3_A 524 ---T---------------------------------KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARA 562 (986)
T ss_dssp ---C---------------------------------HHHHHHHHHHTTCCHHHHHSBGGG-----CCHHHHHHHHHHHH
T ss_pred ---H---------------------------------HHHHHHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHH
T ss_conf ---9---------------------------------999999999869984464398020-----79999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEE-EECCHHHHH
Q ss_conf 7469818676379854128999999999999976179889999527984699720026885599089-876710499
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV-YQGPRERVL 234 (1293)
Q Consensus 159 L~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv-~~G~~~~l~ 234 (1293)
|+.+|+|++|||||+|||+.++..+++.|+. .|+|+|++.| ...++...+|++++|.+|+++ +.|+++++.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-dl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-DSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-CHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEECCCCCHHHHH
T ss_conf 9649999999797667999999999999986----7998999979-8899998689999997994426779999998
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.31 Aligned_cols=201 Identities=19% Similarity=0.223 Sum_probs=155.0
Q ss_pred CCCCCEEEEEECC-----CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCC
Q ss_conf 2110104566168-----39999979996099999989699999814679999692179000134489972699889999
Q 000773 721 RLLNEVTSAFRPG-----VLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 721 ~iL~~vs~~i~~G-----~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~l 795 (1293)
.+++++++.+++| |+++|+||||||||||+++|+|..++. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--8858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999997037889999999999999999839943220112699988779889999999999951997789959999
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts 875 (1293)
||+|++... .+. .... ...++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCCC---HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--3246---8999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999987-38998999926998999999857521024-968999379998916899999829
Q 000773 876 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGRNSHKVIEYYEAI 946 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~g~~~~~g~~~~~~~~~~~~f~~~ 946 (1293)
|||..++..+.+.|+++. +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=351.09 Aligned_cols=197 Identities=28% Similarity=0.421 Sum_probs=143.4
Q ss_pred CCCCCCEEEEEECCCEEEEECCCCCCHHHHH---------HHHHCCCC-CC---CEE------EEEEECCCCCCHHC---
Q ss_conf 3211010456616839999979996099999---------98969999-98---146------79999692179000---
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GDIRISGFPKKQET--- 777 (1293)
Q Consensus 720 ~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl---------~~l~g~~~-~~---~~~------G~i~i~g~~~~~~~--- 777 (1293)
...|+|||+.+++|++++|+|+||||||||+ +.+.+... .+ ... +.+.++..+.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 44336531287189599999258888154577777789998740344566653333551011425763156556655556
Q ss_pred ------------------------------C-----------CCEEEEECCCCCCCC-----------------------
Q ss_conf ------------------------------1-----------344899726998899-----------------------
Q 000773 778 ------------------------------F-----------ARISGYCEQNDIHSP----------------------- 793 (1293)
Q Consensus 778 ------------------------------~-----------~~~~~~v~q~~~~~~----------------------- 793 (1293)
+ .+-.|++.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 43022367889998612668775045554311114666443236763487741016761563220146435666554301
Q ss_pred ---------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---------999999999999703788999999999999999983994322-0112699988779889999999999951
Q 000773 794 ---------QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK-DAIVGLPGVTGLSIEQRKRLTIAVELVA 863 (1293)
Q Consensus 794 ---------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~lSgGerkr~~ia~~l~~ 863 (1293)
.+||.|++.|... . . ...++.++++.+||.... +.. ...||||||||+.||++|+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~-~--~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I-P--SIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHCCHHHHHHHHHC------C-H--HHHHHHHHHHHCCCCHHHCCCC-----CCCCCHHHHHHHHHHHHHHH
T ss_conf 5677787740779999998751------5-0--5899999999818863331687-----15799999999999999962
Q ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE-----CCCEEEEECCC
Q ss_conf 99---77899599999999999999999999873899899992699899999985752102-----49689993799
Q 000773 864 NP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPL 932 (1293)
Q Consensus 864 ~p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~~g~~~~~g~~ 932 (1293)
+| ++++|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|++++|. ++|++++.|++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 8788978999798889999999999999999996699899993799--99972999999668777789789997699
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=1.00 E-value=1 Score=333.33 Aligned_cols=196 Identities=29% Similarity=0.397 Sum_probs=144.8
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH-C---------CCCCC---CEEE------EEEECCCCCCHHC----
Q ss_conf 2110104566168399999799960999999896-9---------99998---1467------9999692179000----
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA-G---------RKTGG---YIEG------DIRISGFPKKQET---- 777 (1293)
Q Consensus 721 ~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~-g---------~~~~~---~~~G------~i~i~g~~~~~~~---- 777 (1293)
..|+|||+.+++|++++|+|+||||||||++++. | ....+ .+.| .|.+++.+.....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 56466259986898999992799988999999999999876247777888501422643445389975844466755560
Q ss_pred ------------------CCCEEEEECCCCCC----------------------CC------------------------
Q ss_conf ------------------13448997269988----------------------99------------------------
Q 000773 778 ------------------FARISGYCEQNDIH----------------------SP------------------------ 793 (1293)
Q Consensus 778 ------------------~~~~~~~v~q~~~~----------------------~~------------------------ 793 (1293)
..+..||++|...+ .+
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 12213789999986118898872545432443555565521246650341011166531002112464334022333106
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf --------9999999999997037889999999999999999839943-2201126999887798899999999999519
Q 000773 794 --------QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVAN 864 (1293)
Q Consensus 794 --------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~ 864 (1293)
.+|+.|++.|... . .. ...+.++++.++|.. ..+..+. .||||||||+.||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHCCHHHHHHHHHC------C-HH--HHHHHHHHHHCCCCCCCCCCCHH-----HCCHHHHHHHHHHHHHHCC
T ss_conf 777787650679999998751------3-36--89999999985998211027040-----1999999999999999538
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE-----CCCEEEEECCC
Q ss_conf 9---77899599999999999999999999873899899992699899999985752102-----49689993799
Q 000773 865 P---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPL 932 (1293)
Q Consensus 865 p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~~g~~~~~g~~ 932 (1293)
| ++++|||||+|||..+...+++.|+++++.|.|||+++|++ +....+|++++|. ++|++++.|++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl--~~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL--DVIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 889988999798789999999999999999996799899986887--99984999999767777789889986599
Done!