BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000774
(1293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 230 bits (586), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 158/215 (73%), Gaps = 4/215 (1%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
+I++RN F+W ++++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V +
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EG 60
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 403
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 461
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 462 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
TR+LVT+ + +L QVD II++ G + E G++++L
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 16/232 (6%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 1027
I G + +PQ + + ++R N+ + + ++ L
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKT 1087
+ G ++ E G N S GQ+Q I + D+ +AVD I +
Sbjct: 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1088 I---REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
+ + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +G+
Sbjct: 170 VIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA 221
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 358
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 359 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
WI T+++NI+FG +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 478
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 479 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 520
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 358
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 359 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
WI T+++NI+FG +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 478
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 479 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 520
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 249/548 (45%), Gaps = 61/548 (11%)
Query: 624 LFYNTIYSLLSF-----GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTN 678
L TIY+L S G++++TL+ RL + + R P+ FF
Sbjct: 81 LILGTIYALTSLLFWLQGKIMLTLSQD---------VVFRLRKELFEKLQRVPVGFFDRT 131
Query: 679 PLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL---IGIVSTMSLWAIMPXXX 735
P G II+R D+ +I+ + + F + L ++ + ++ ++ +I+P
Sbjct: 132 PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV 191
Query: 736 XXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY-------KAYDRMADI 788
S R+ + + E ++GL+ I+ + + +DR+ +
Sbjct: 192 LITQIV---SSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 789 NGKSMDKNIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 843
K K ++ L+NM N A+ + G WL +
Sbjct: 249 LRKVGTKAQIFSGVLPPLMNMVNNLGFAL----ISGFGGWLALKDIIT-----------V 293
Query: 844 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEA--PLVIESNRPPP 901
T+ + Y+ T L + ++ + +L + ER+ ++L E P +E
Sbjct: 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELRE--- 350
Query: 902 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 961
G I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R +
Sbjct: 351 ---VRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406
Query: 962 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEA 1018
++RG+IL+DG DI K LR +GI+ Q +LFS TV+ NL +P + +D ++ EA
Sbjct: 407 VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA--TDEEIKEA 464
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 1078
+ H I+ G + +++ GE+ S GQRQ KIL+LDEAT+ VD
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 1079 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+T+ IQ + + + T +IIAHRLNTI + D I++L G ++E +EL+ G +
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYY 584
Query: 1139 SKMVQSTG 1146
G
Sbjct: 585 ELFTSQYG 592
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 171/369 (46%), Gaps = 31/369 (8%)
Query: 150 GLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTV 209
G++ E ++ + +K + E K V KAQ + ++N +V
Sbjct: 217 GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMN----MVNN 272
Query: 210 VSFGMFTLLGGDLTPARAFTSLSLFAVLRF------PLFMLPNMITQVVNANVSLKRMEE 263
+ F + + GG L T ++ + + PL L N + A S +R+ E
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 264 FLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGT 322
L EE+ P+ L I +N +FS+D K +P L +I I G VA+VG T
Sbjct: 333 ILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPT 390
Query: 323 GEGKTSLISAMLG--------------ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 368
G GKT++++ ++ ++ + +S +R ++ V Q + +F+ TV++N
Sbjct: 391 GSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS--LRSSIGIVLQDTILFSTTVKEN 448
Query: 369 ILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 427
+ +G+ ++A +T H + LP G T + + G ++S GQ+Q +++ RA +
Sbjct: 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508
Query: 428 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 487
N + I D+ S +D + + + + GKT +++ ++L+ + D II++ +G +
Sbjct: 509 NPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
Query: 488 KEEGTFEDL 496
E G ++L
Sbjct: 568 VEMGKHDEL 576
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 166 bits (421), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 358
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 359 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
WI T+++NI+ G +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 478
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 479 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 520
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 358
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 359 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
WI T+++NI+ G +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 478
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 479 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 520
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 92
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+FG +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 93 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 152
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 153 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 212
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 213 ILHEGSSYFYGTFSELQN 230
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 28/227 (12%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
E+V + PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 22 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 81
Query: 972 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
+ Q + GT++ N+ + + ++ L++ I +
Sbjct: 82 R-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 128
Query: 1032 SLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREE 1091
+ + + E G S GQR + +LD +DV T+ +E
Sbjct: 129 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEI 181
Query: 1092 FKSC--------TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
F+SC T +++ ++ + D+IL+L G Y T EL
Sbjct: 182 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 80
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+FG +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 200
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 201 ILHEGSSYFYGTFSELQN 218
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 28/227 (12%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
E+V + PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
Query: 972 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
+ Q + GT++ N+ + + ++ L++ I +
Sbjct: 70 R-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 1032 SLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREE 1091
+ + + E G S GQR + +LD +DV T+ +E
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEI 169
Query: 1092 FKSC--------TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
F+SC T +++ ++ + D+IL+L G Y T EL
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 162 bits (411), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 6/222 (2%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 358
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 359 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
WI T+++NI+ G +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 167
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 478
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 227
Query: 479 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 520
I+++H+G GTF +L + F + +++ EE+
Sbjct: 228 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 269
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 29/217 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ S + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 157
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ + F+SC
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 210
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 211 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 110
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+ G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 111 MPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 170
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 231 ILHEGSSYFYGTFSELQN 248
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 28/215 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ +E F+SC
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 211
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
T +++ ++ + D+IL+L G Y T EL
Sbjct: 212 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 110
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+FG +++ RY I L+ D+ D +GE G+ +S GQ+ ++S
Sbjct: 111 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 170
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 231 ILHEGSSYFYGTFSELQN 248
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 28/215 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQ+ + +LD +DV T+ +E F+SC
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 211
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
T +++ ++ + D+IL+L G Y T EL
Sbjct: 212 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 195/370 (52%), Gaps = 13/370 (3%)
Query: 768 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 824
E L G+ +RA++ + + N + ++++R ++++ + A+ L I G++ L
Sbjct: 207 ENLLGVRVVRAFRR-EEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVL 265
Query: 825 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 884
+V+N E +G +++Y + ++ +++ + ++ + A +
Sbjct: 266 WFGGVLVRNNQME--------IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVL 317
Query: 885 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 944
E+ +E P + E++ GS+ FE+V RY PVL G++F++ P V ++G
Sbjct: 318 EVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGE 377
Query: 945 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 1004
TG+GKS+++N + R+++ ERGR+ +D D+ L DLR + +PQ VLFSGT++ NL
Sbjct: 378 TGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437
Query: 1005 DPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXX 1063
E +D ++ EA + A + D I G D++V G NFS GQ+Q
Sbjct: 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497
Query: 1064 XKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
K+L+LD+ T++VD T+ I ++ K CT II ++ T + D+IL+L G+V
Sbjct: 498 PKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557
Query: 1124 YDTPEELLSN 1133
+ T +ELL +
Sbjct: 558 FGTHKELLEH 567
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 136/539 (25%), Positives = 242/539 (44%), Gaps = 66/539 (12%)
Query: 10 GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRITHEARKNFASGK 69
G + +G V G+ C G LR L FRK L + F +
Sbjct: 66 GILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDL----FRKVLSFSISNVNRFHTSS 121
Query: 70 ITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISLVLLYNEXXXXXXXXXXXXXFMFPVQT 128
+ +T D QLQ V L + AP + +V+ F+ P
Sbjct: 122 LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVM----AVSINVKLSSVLIFLIPPIV 177
Query: 129 FIISRMQK----LTKEGLQRTDKRIGLMNEILAAMDAVKCY---AWEN-SFQSKVQNVRN 180
+ + K L ++ + TD+ ++ E L + V+ + +EN +F+ +++R
Sbjct: 178 LLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRR 237
Query: 181 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAV-- 236
+S F S I+ ++P+ + +V+ GM +L GG L S+ A
Sbjct: 238 SIISAF----------SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTN 287
Query: 237 ----LRFPLFMLPNMITQVVNANVSLKRMEEFL-------LAEEKILLPNPPLTSGLPAI 285
+ F L M+ N++ +V A+ S KR+ E L A+ + LPN G ++
Sbjct: 288 YLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPN---VEG--SV 342
Query: 286 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 345
S N F + + P L +N + GSLVA++G TG GK++L++ + + P
Sbjct: 343 SFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 346 V------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ--H 391
V +RG ++ VPQ + +F+ T+++N+ +G E A ++ ++ + H
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIH 459
Query: 392 DLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
D + LP G + + G N SGGQKQR+S+ARA+ V I DD S++D +++
Sbjct: 460 DFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL 519
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 509
D R G T ++T ++ D+I+++HEG V GT ++L + + ++++ E+
Sbjct: 520 DGLKR-YTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYES 577
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 2/198 (1%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 80
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+ G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 81 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 139
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 140 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 199
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 200 ILHEGSSYFYGTFSELQN 217
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 912 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 971
E+V + PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
Query: 972 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 1031
+ Q + GT++ N+ S + + ++ L++ I +
Sbjct: 70 R-------------ISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKF 115
Query: 1032 SLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREE 1091
+ + + E G S GQR + +LD +DV T+ +E
Sbjct: 116 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEI 168
Query: 1092 FKSC--------TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
F+SC T +++ ++ + D+IL+L G Y T EL
Sbjct: 169 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 291 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 350
+FS S P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G
Sbjct: 42 FFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGR 100
Query: 351 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
+++ Q SWI T+++NI+ G +++ RY I L+ D+ D +GE G+
Sbjct: 101 ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 470
+SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 471 HFLSQVDRIILVHEGMVKEEGTFEDLSN 498
L + D+I+++HEG GTF +L N
Sbjct: 220 EHLKKADKILILHEGSSYFYGTFSELQN 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 29/215 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q+ + GT++ N+ S + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ +E F+SC
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 210
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
T +++ ++ + D+IL+L G Y T EL
Sbjct: 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 2/198 (1%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQNSWI 110
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+ G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 230 ILHEGSSYFYGTFSELQN 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 29/215 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q+ + GT++ N+ S + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQR + +LD +DV T+ +E F+SC
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 210
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
T +++ ++ + D+IL+L G Y T EL
Sbjct: 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 131/236 (55%), Gaps = 1/236 (0%)
Query: 903 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 962
WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 963 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 1022
E G I IDG L RK G+IPQ +FSGT R NLDP + HSD ++W+ +
Sbjct: 74 E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 1082
L+ I + LD + + G S G +Q KIL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 12/198 (6%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI---RGTV 351
L NI+ I G V ++G TG GK++L+SA L GE+ VS S + R
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96
Query: 352 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
+PQ +IF+ T R N+ +A K D L+ ++ PG + + G +
Sbjct: 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 471
S G KQ + +AR+V S + + + D+P + LD V Q+ R ++ + T +L ++
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-VTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 472 FLSQVDRIILVHEGMVKE 489
+ + D+ +++ E V++
Sbjct: 216 AMLECDQFLVIEENKVRQ 233
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 120/198 (60%), Gaps = 2/198 (1%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 360
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 110
Query: 361 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 420
T+++NI+ G +++ RY I L+ D+ D +GE G+ +S GQ+ ++S
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 169
Query: 421 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 480
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 481 LVHEGMVKEEGTFEDLSN 498
++HEG GTF +L N
Sbjct: 230 ILHEGSSYFYGTFSELQN 247
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 1043
+ Q + GT++ N+ S + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1044 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 1095
S GQ+ + +LD +DV T+ +E F+SC
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 210
Query: 1096 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1130
T +++ ++ + D+IL+L G Y T EL
Sbjct: 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/477 (25%), Positives = 223/477 (46%), Gaps = 33/477 (6%)
Query: 674 FFHTNPLGRIINRFAKDLGDI-DRNVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAI 730
F+ N +G++I+R D+ D + +N+++ ++ + LS + + T++ I
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 731 MPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 790
P R++ R S + V E + G+S ++++ D A
Sbjct: 171 FPFYILTVYVFF---GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA---- 223
Query: 791 KSMDK-NIRYTLVNMGANRWLAIRLEIVGG-------LMIWLTATFAVVQNGSAENQEAF 842
K+ DK N + + RW A + ++I + A A+ + + AF
Sbjct: 224 KNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAF 283
Query: 843 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 902
+ LL + + T + + S +++RV +L E + P
Sbjct: 284 VGYLELLFGPLRRLVASFTTLTQ-------SFASMDRV---FQLIDEDYDIKNGVGAQPI 333
Query: 903 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 962
G I + V +Y P+L ++ +I + V VG +G GKS+++N + R ++
Sbjct: 334 EIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393
Query: 963 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEAL 1019
G+ILIDG +I F LR +G++ Q +LFS TV+ N+ P + +D ++ EA
Sbjct: 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA--TDEEVVEAA 451
Query: 1020 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVR 1079
+ A+ D I G D +V E G S GQ+Q IL+LDEAT+A+D+
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 1080 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G+
Sbjct: 512 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 125/461 (27%), Positives = 210/461 (45%), Gaps = 48/461 (10%)
Query: 68 GKITNLMTTDAEQLQQ-VCQALHTLWSAPFRIIISLVLLYNEXXXXXXXXXXXXXFMFPV 126
G++ + + D EQ + + L +W III+L +++ F+FP
Sbjct: 118 GQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMF----FLDVKLTLAALFIFPF 173
Query: 127 QTFII----SRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENS----FQSKVQNV 178
+ R++KLT+E Q + G ++E + + VK +A E++ F K N
Sbjct: 174 YILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233
Query: 179 RNDELSWFR-KAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVL 237
L R A AA N+ + + P++V + G + + G +T + +L
Sbjct: 234 LTRALKHTRWNAYSFAAINT-VTDIGPIIV--IGVGAYLAISGSITVGTLAAFVGYLELL 290
Query: 238 RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSK 297
PL L T + + S+ R+ F L +E + N G I I+ G D
Sbjct: 291 FGPLRRLVASFTTLTQSFASMDRV--FQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHV 345
Query: 298 A------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---- 347
+ E P L +INL I G VA VG +G GK++LI+ ++ V+ +I
Sbjct: 346 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRFYDVTSGQILIDGHN 404
Query: 348 ---------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ--HDLDL- 395
R + V Q + +F+ TV++NIL G A E+ ++ + HD +
Sbjct: 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMN 462
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD + +
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE-SESIIQEALD 521
Query: 456 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 522 VLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 127/522 (24%), Positives = 234/522 (44%), Gaps = 42/522 (8%)
Query: 633 LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLG 692
L F + L A+SY L S ++ + + + P+ FF G +++R D
Sbjct: 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYD-- 131
Query: 693 DIDRNVAVFVNMFMGQVSQLLSTFV-----LIGIVSTMSLW-------AIMPXXXXXXXX 740
VA G S+ L + V +IG+++ M W ++
Sbjct: 132 --SEQVA-------GATSRALVSIVREGASIIGLLTLM-FWNSWQLSLVLIVVAPVVAFA 181
Query: 741 XXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK---NI 797
R++ R V + + L G + +Y ++ K DK ++
Sbjct: 182 ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGG----QEVERKRFDKVSNSM 237
Query: 798 RYTLVNMGANRWLA-IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNI 856
R + + + + +A ++++ L ++ A V + AE T ++ S +
Sbjct: 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG---TFTVVFSAMFGL 294
Query: 857 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 916
L A+ + S + + A + + ++L +E N +G + +DV
Sbjct: 295 MRPLKALTSVTSEFQRGMAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKDVTF 349
Query: 917 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 976
Y+ + P L +SF+IP V +VGR+G+GKS++ N R +++ G I +DG D+
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 977 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLG 1034
+ L +LR+ ++ Q+ LF+ T+ N+ + E++ + +A +AH + I G
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 1035 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKS 1094
LD + E G + S GQRQ +L+LDEAT+A+D ++ IQ + E K+
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 1095 CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
T+L+IAHRL+TI D IL++D G ++E +LL+ +G+
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 56/330 (16%)
Query: 191 FLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSL-----FAVLRFPLFMLP 245
FLA+ +S P TVV MF G + P +A TS++ A + LF L
Sbjct: 268 FLASVDSIRAELTPGTFTVVFSAMF----GLMRPLKALTSVTSEFQRGMAACQ-TLFGLM 322
Query: 246 NMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 305
++ T+ N +R+ + +++ F++ K E+P L +
Sbjct: 323 DLETERDNGKYEAERVN--------------------GEVDVKDVTFTYQGK-EKPALSH 361
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------VA 352
++ IP G VA+VG +G GK++ I+ + V S + G A
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKST-IANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420
Query: 353 YVPQVSWIFNATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
V Q +FN T+ +NI + + E R E+A ++ +P G T IGE G +
Sbjct: 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL----SGKTRVLV 466
+SGGQ+QRV++ARA+ ++ V I D+ SALD +R I+ L KT +++
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTES-----ERAIQAALDELQKNKTVLVI 535
Query: 467 TNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
++L + Q D I++V EG + E G DL
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADL 565
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 139/524 (26%), Positives = 235/524 (44%), Gaps = 54/524 (10%)
Query: 646 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNV------- 698
Y + S RL ++ SILR + FF G +INR + D + R+V
Sbjct: 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 143
Query: 699 -------AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREV 751
+V ++M M VS L+TFVL +V +S+ A++ R +
Sbjct: 144 LRAGAQASVGISM-MFFVSPNLATFVL-SVVPPVSIIAVI---------------YGRYL 186
Query: 752 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MADIN--GKSMDKNIRYTLVNMGANR 808
++L +T+ + A + +R +A+ + M +I +D ++ A
Sbjct: 187 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 246
Query: 809 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 868
+ G L++ + GSA S+ L YA + + + S
Sbjct: 247 GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSS---FLMYAFWVGISIGGLSSFYS 303
Query: 869 LAENSLNAVERVGNYIELPSEAPL---VIESNRPPPGWPSSGSIKFEDVVLRY--RPELP 923
L A R+ +E + P VI + + G+++F++V Y RPE+P
Sbjct: 304 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----FQGALEFKNVHFAYPARPEVP 358
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ S +IP +VG +G+GKS++L+ L R+ + G I +DG DI + + LR
Sbjct: 359 -IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 984 KILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1038
+G + Q P+LFS ++ N+ DP S ++ ++ E A+ IR G +
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 1039 VSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1098
V E G S GQ+Q KIL+LDEAT+A+D + L+Q+ + T+L
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVL 536
Query: 1099 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
+IAHRL+TI + + + +LD G++ EY EELLS + K++
Sbjct: 537 VIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 117/521 (22%), Positives = 239/521 (45%), Gaps = 82/521 (15%)
Query: 37 RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQL-QQVCQALHTLWSAP 95
R+ RLR++L +++ R+ + + R +G++ N +++D L + V + L A
Sbjct: 92 RIVNRLRTSLFSSILRQEVAFFDKTR----TGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 96 FRIIISLVLLYNEXXXXXXXXXXXXXFMFP-VQTFIIS--------------RMQKLTKE 140
+ + + +++ F+ P + TF++S ++KLTK
Sbjct: 148 AQASVGISMMF---------------FVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKV 192
Query: 141 GLQRTDKRIGLMNEILAAMDAVKCYAWE----NSFQSKVQNVRN-DELSWFRKAQFLAAC 195
+ L E + + V+ + E + SKV +V F +A F A
Sbjct: 193 TQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT 252
Query: 196 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV-LRFPLFMLPNMITQVVNA 254
+ ++ VL + G+ L+G +S ++A + + L + ++++
Sbjct: 253 G--LSGNLIVLSVLYKGGL--LMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 308
Query: 255 NVSLKRMEEFLLAEEKILLPNPPLTSGL--------PAISIRNGYFSWDSKAERPTLLNI 306
+ R+ E L E K+ P G+ A+ +N +F++ ++ E P +
Sbjct: 309 LGAGGRLWELLEREPKL-----PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDF 363
Query: 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 354
+L IP GS+ A+VG +G GK++++S +L P S ++ +R + V
Sbjct: 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423
Query: 355 PQVSWIFNATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
Q +F+ ++ +NI +G S+ ++ +V + + P G T +GE+GV
Sbjct: 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA---HVGRQVFDRCIRGELSGKTRVLVT 467
+SGGQKQR+++ARA+ N + + D+ SALDA ++ ++ DR + G+T +++
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL----MDGRTVLVIA 539
Query: 468 NQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELFQKLM 507
++L + + + ++ +G + E G E+ LS +++KLM
Sbjct: 540 HRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 138/524 (26%), Positives = 234/524 (44%), Gaps = 54/524 (10%)
Query: 646 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNV------- 698
Y + S RL ++ SILR + FF G +INR + D + R+V
Sbjct: 115 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 174
Query: 699 -------AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREV 751
+V ++M M VS L+TFVL +V +S+ A++ R +
Sbjct: 175 LRAGAQASVGISM-MFFVSPNLATFVL-SVVPPVSIIAVI---------------YGRYL 217
Query: 752 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MADIN--GKSMDKNIRYTLVNMGANR 808
++L +T+ + A + +R +A+ + M +I +D ++ A
Sbjct: 218 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 277
Query: 809 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 868
+ G L++ + GSA S+ L YA + + + S
Sbjct: 278 GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSS---FLMYAFWVGISIGGLSSFYS 334
Query: 869 LAENSLNAVERVGNYIELPSEAPL---VIESNRPPPGWPSSGSIKFEDVVLRY--RPELP 923
L A R+ +E + P VI + + G+++F++V Y RPE+P
Sbjct: 335 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----FQGALEFKNVHFAYPARPEVP 389
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
+ S +IP +VG +G+GKS++L+ L R+ + G I +DG DI + + LR
Sbjct: 390 -IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 984 KILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 1038
+G + Q P+LFS ++ N+ DP S ++ ++ E A+ IR G +
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTV 507
Query: 1039 VSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1098
V E G S GQ+Q KIL+LDEAT+A+D + L+Q+ + T+L
Sbjct: 508 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVL 567
Query: 1099 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
+IAH L+TI + + + +LD G++ EY EELLS + K++
Sbjct: 568 VIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 117/521 (22%), Positives = 238/521 (45%), Gaps = 82/521 (15%)
Query: 37 RVGFRLRSTLVAAVFRKSLRITHEARKNFASGKITNLMTTDAEQL-QQVCQALHTLWSAP 95
R+ RLR++L +++ R+ + + R +G++ N +++D L + V + L A
Sbjct: 123 RIVNRLRTSLFSSILRQEVAFFDKTR----TGELINRLSSDTALLGRSVTENLSDGLRAG 178
Query: 96 FRIIISLVLLYNEXXXXXXXXXXXXXFMFP-VQTFIIS--------------RMQKLTKE 140
+ + + +++ F+ P + TF++S ++KLTK
Sbjct: 179 AQASVGISMMF---------------FVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKV 223
Query: 141 GLQRTDKRIGLMNEILAAMDAVKCYAWE----NSFQSKVQNVRN-DELSWFRKAQFLAAC 195
+ L E + + V+ + E + SKV +V F +A F A
Sbjct: 224 TQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT 283
Query: 196 NSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV-LRFPLFMLPNMITQVVNA 254
+ ++ VL + G+ L+G +S ++A + + L + ++++
Sbjct: 284 G--LSGNLIVLSVLYKGGL--LMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKG 339
Query: 255 NVSLKRMEEFLLAEEKILLPNPPLTSGL--------PAISIRNGYFSWDSKAERPTLLNI 306
+ R+ E L E K+ P G+ A+ +N +F++ ++ E P +
Sbjct: 340 LGAGGRLWELLEREPKL-----PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDF 394
Query: 307 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 354
+L IP GS+ A+VG +G GK++++S +L P S ++ +R + V
Sbjct: 395 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 454
Query: 355 PQVSWIFNATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
Q +F+ ++ +NI +G S+ ++ +V + + P G T +GE+GV
Sbjct: 455 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA---HVGRQVFDRCIRGELSGKTRVLVT 467
+SGGQKQR+++ARA+ N + + D+ SALDA ++ ++ DR + G+T +++
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL----MDGRTVLVIA 570
Query: 468 NQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELFQKLM 507
+ L + + + ++ +G + E G E+ LS +++KLM
Sbjct: 571 HHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 139/572 (24%), Positives = 259/572 (45%), Gaps = 56/572 (9%)
Query: 626 YNTIYSLLSFGQVLVTLAN-SYWLIISSLYAAKRLH---DAMLHSILRAPMVFFHTNPLG 681
Y Y+ + G ++V S+W L A +++H H+I+ + +F + +G
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFW----CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVG 165
Query: 682 RIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS----TMSLWAIMPXXXXX 737
+ R D+ I+ + + MF ++ F+ IG T+ + AI P
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI-IGFTRGWKLTLVILAISPVLGLS 224
Query: 738 XXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 797
S+ + K L + ++ A+ E L + T+ A+ + + ++++
Sbjct: 225 AGIWAKILSSFTD-KELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 798 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 857
R +G + + + + G + + A++A+ AF L++S +I
Sbjct: 282 R-----LGIKKAITANISM-GAAFLLIYASYAL----------AFWYGTSLVISKEYSIG 325
Query: 858 SLLTAVLRLA----SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG------ 907
+LT + S+ + S N +E N E +I++ + SG
Sbjct: 326 QVLTVFFSVLIGAFSVGQASPN-IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 908 --SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 963
+++F+++ Y R E+ +L GL+ + V +VG +G GKS+ + + R+ +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 964 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERA 1022
G + IDG DI + LR+I+G++ Q PVLF+ T+ N+ E D + +A++ A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 1082
+ D I + D V E G S GQ+Q KIL+LDEAT+A+D ++A
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
++Q + + + T ++IAHRL+T+ + D I D G ++E +EL+ +G F K+V
Sbjct: 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF-KLV 622
Query: 1143 QSTGAANAQYLRSLVLGGEAENKLREENKQID 1174
+ A N + LG EA K ++E +D
Sbjct: 623 MTQTAGN-----EIELGNEA-CKSKDEIDNLD 648
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 160/300 (53%), Gaps = 12/300 (4%)
Query: 862 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS--SGSIKFEDVVLRY- 918
AV +++S A + A + I + + P I+S P+ G+++F VV Y
Sbjct: 983 AVGQVSSFAPDYAKATVSASHIIRIIEKTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYP 1041
Query: 919 -RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 977
RP +P VL GLS + + +VG +G GKS+++ L R + G + +DG +I +
Sbjct: 1042 TRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL-- 1033
+ LR LGI+ Q P+LF ++ N+ + ++S +E + RA + I + +SL
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1034 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK 1093
+ +V + G S GQ+Q IL+LDEAT+A+D ++ ++Q+ + + +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 1094 SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYL 1153
T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G FS MV A Y+
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS-MVSVQAGAKRSYV 1278
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV 346
F++ ++ P L ++L++ G +A+VG +G GK++++ + P++ D +
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 347 -------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLL 396
+R + V Q +F+ ++ +NI +G YE +A ++ +D L
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
P T +G++G +SGGQKQR+++ARA+ + + D+ SALD +V +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDK 1216
Query: 457 ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELFQKLMENAGKMEE 515
G+T +++ ++L + D I+++ G VKE GT + L+ G F + AG
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Query: 516 YV 517
YV
Sbjct: 1277 YV 1278
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 125/260 (48%), Gaps = 17/260 (6%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
+ +N +FS+ S+ E L +NL + G VA+VG +G GK++ + M P+
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 345 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQH 391
++ +R + V Q +F T+ +NI +G EKA+ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+ LP T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQ 566
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM--EN 509
+ G+T +++ ++L + D I G++ E+G ++L ++ KL+ +
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 510 AG-KMEEYVEEKEDGETVDN 528
AG ++E E + + +DN
Sbjct: 627 AGNEIELGNEACKSKDEIDN 646
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 139/572 (24%), Positives = 259/572 (45%), Gaps = 56/572 (9%)
Query: 626 YNTIYSLLSFGQVLVTLAN-SYWLIISSLYAAKRLH---DAMLHSILRAPMVFFHTNPLG 681
Y Y+ + G ++V S+W L A +++H H+I+ + +F + +G
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFW----CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVG 165
Query: 682 RIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS----TMSLWAIMPXXXXX 737
+ R D+ I+ + + MF ++ F+ IG T+ + AI P
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI-IGFTRGWKLTLVILAISPVLGLS 224
Query: 738 XXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 797
S+ + K L + ++ A+ E L + T+ A+ + + ++++
Sbjct: 225 AGIWAKILSSFTD-KELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 798 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 857
R +G + + + + G + + A++A+ AF L++S +I
Sbjct: 282 R-----LGIKKAITANISM-GAAFLLIYASYAL----------AFWYGTSLVISKEYSIG 325
Query: 858 SLLTAVLRLA----SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG------ 907
+LT + S+ + S N +E N E +I++ + SG
Sbjct: 326 QVLTVFFSVLIGAFSVGQASPN-IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 908 --SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 963
+++F+++ Y R E+ +L GL+ + V +VG +G GKS+ + + R+ +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 964 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERA 1022
G + IDG DI + LR+I+G++ Q PVLF+ T+ N+ E D + +A++ A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 1082
+ D I + D V E G S GQ+Q KIL+LDEAT+A+D ++A
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1142
++Q + + + T ++IAHRL+T+ + D I D G ++E +EL+ +G F K+V
Sbjct: 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF-KLV 622
Query: 1143 QSTGAANAQYLRSLVLGGEAENKLREENKQID 1174
+ A N + LG EA K ++E +D
Sbjct: 623 MTQTAGN-----EIELGNEA-CKSKDEIDNLD 648
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 160/300 (53%), Gaps = 12/300 (4%)
Query: 862 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS--SGSIKFEDVVLRY- 918
AV +++S A + A + I + + P I+S P+ G+++F VV Y
Sbjct: 983 AVGQVSSFAPDYAKATVSASHIIRIIEKTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYP 1041
Query: 919 -RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 977
RP +P VL GLS + + +VG +G GKS+++ L R + G + +DG +I +
Sbjct: 1042 TRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100
Query: 978 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL-- 1033
+ LR LGI+ Q P+LF ++ N+ + ++S +E + RA + I + +SL
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1034 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK 1093
+ +V + G S GQ+Q IL+LDEAT+A+D ++ ++Q+ + + +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 1094 SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYL 1153
T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G FS MV A Y+
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS-MVSVQAGAKRSYV 1278
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV 346
F++ ++ P L ++L++ G +A+VG +G GK++++ + P++ D +
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 347 -------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLL 396
+R + V Q +F+ ++ +NI +G YE +A ++ +D L
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
P T +G++G +SGGQKQR+++ARA+ + + D+ SALD +V +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDK 1216
Query: 457 ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELFQKLMENAGKMEE 515
G+T +++ ++L + D I+++ G VKE GT + L+ G F + AG
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Query: 516 YV 517
YV
Sbjct: 1277 YV 1278
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 125/260 (48%), Gaps = 17/260 (6%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 344
+ +N +FS+ S+ E L +NL + G VA+VG +G GK++ + M P+
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 345 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQH 391
++ +R + V Q +F T+ +NI +G EKA+ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 451
+ LP T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQ 566
Query: 452 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM--EN 509
+ G+T +++ ++L + D I G++ E+G ++L ++ KL+ +
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 510 AG-KMEEYVEEKEDGETVDN 528
AG ++E E + + +DN
Sbjct: 627 AGNEIELGNEACKSKDEIDN 646
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 2/233 (0%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALERA 1022
G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N+ E+S + EA A
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 457
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 1082
+ D I + GLD + E G S GQRQ IL+LDEAT+A+D ++
Sbjct: 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 148/295 (50%), Gaps = 29/295 (9%)
Query: 232 SLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGY 291
S+ A++R PL L N+ Q + + + L +E++ + + RN
Sbjct: 290 SMIALMR-PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVT 348
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS------- 344
F++ + E P L NINL IP G VA+VG +G GK++ I++++ + +
Sbjct: 349 FTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKST-IASLITRFYDIDEGHILMDGHD 406
Query: 345 ------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--- 395
A +R VA V Q +FN TV +NI + E +R E+ + + + +D
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINK 465
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
+ G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD +R I+
Sbjct: 466 MDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQ 520
Query: 456 GEL----SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
L +T +++ ++L + Q D I++V +G++ E GT +L ++ +L
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/528 (26%), Positives = 237/528 (44%), Gaps = 64/528 (12%)
Query: 636 GQVLVTLANSYWLIISSLYAAK----RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 691
GQ+ VT LY A+ RL + SILR + +F TN G + + +L
Sbjct: 153 GQITVT---------CYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNL 203
Query: 692 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMPXXXXXXXXXXXXQST- 747
+ + M +SQ ++ F++ S T+ + A+ P ST
Sbjct: 204 ERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTF 263
Query: 748 -AREVKRLDSITRSPVYAQFGEALN-GLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 805
RE R YA+ G+ + +S+IR + +NG +RY L
Sbjct: 264 AIRETLR---------YAKAGKVVEETISSIRT------VVSLNG------LRYELERYS 302
Query: 806 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAST----MGLLLSYALNITSLLT 861
A + ++ GL +L +F +Q A N +FA +G + +LN +LT
Sbjct: 303 TAVEEAKKAGVLKGL--FLGISFGAMQ---ASNFISFALAFYIGVGWVHDGSLNFGDMLT 357
Query: 862 A---------VLRLASLAENSLNAVERVGNYI-ELPSEAPLVIESNRPP-PGWPSSGSIK 910
L LA L + + I E+ P++ S++ G I
Sbjct: 358 TFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417
Query: 911 FEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
E+V Y RP++P +L G++ + V +VG +G GKS++++ L R ++ +G+I
Sbjct: 418 VENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT 476
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 1027
IDG D+ L LRK + ++ Q P LF+ T+ N+ E + ++ A + A+ +
Sbjct: 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 1028 IRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKT 1087
I+ G + V + G S GQ+Q KIL+LDEAT+A+D ++ ++Q+
Sbjct: 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 1088 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
+ + K T +IIAHRL+TI + D I+ +G+V+E L++ +G
Sbjct: 597 LDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQG 644
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 907 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
G + F++V Y RPE+ +L GLSF++ P + +VG +G GKS+++ L R +
Sbjct: 1075 GKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR----FNLDPFSEHSDADLWEALE 1020
G I IDG +I R + I+ Q P LF ++ + LDP S + A + EA
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAAR 1192
Query: 1021 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRT 1080
A++ + I G + +V + G S GQ+Q KIL+LDEAT+A+D +
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 1081 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1140
+ ++Q+ + + T ++IAHRLNT+++ D I ++ +G ++E T +L+S +G ++ K
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKG-AYYK 1311
Query: 1141 MVQ 1143
+ Q
Sbjct: 1312 LTQ 1314
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 111/456 (24%), Positives = 210/456 (46%), Gaps = 51/456 (11%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 337
I++ N +F++ S+ + P L +NL + G VA+VG +G GK+++IS +L G++
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 338 P----PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQH 391
V D + +R VA V Q +FN T+ +NI G A + + +
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 392 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH---VGRQ 448
+ LP G T +G+RG +SGGQKQR+++ARA+ N + + D+ SALDA + +Q
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 449 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
D+ + G+T +++ ++L + D II G V E G L L+ L+
Sbjct: 596 ALDKAAK----GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV- 650
Query: 509 NAGKMEEYVEEKEDGE-----TVDNKTSKP-----AANGVDNDLPKEAS----------- 547
A + V+ +G+ +V +TS+ A+ +D+ + + S
Sbjct: 651 TAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPV 710
Query: 548 -DTRKTKEGKSVL--IKQEERETGVVS---FKVLSRYK-DAXXXXXXXXXXXXCYFLTET 600
D ++ + GK L +KQE E F++L + A F+ T
Sbjct: 711 IDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPT 770
Query: 601 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 660
V +++++ + + F+ ++ +L+ Q + + ++++ I+S + L
Sbjct: 771 YSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLR 830
Query: 661 DAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDI 694
+ + ++L + FF + N G+I R A D+ ++
Sbjct: 831 NKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNL 866
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 125/238 (52%), Gaps = 20/238 (8%)
Query: 288 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS-------AMLGELPPV 340
+N F++ + E L ++ + G +A+VG +G GK+++++ + GE+
Sbjct: 1080 KNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI--F 1137
Query: 341 SDASAV-------IRGTVAYVPQVSWIFNATVRDNILFG---SAFEPARYEKAIDVTSLQ 390
D S + R +A V Q +F+ ++ +NI++G S+ A+ E+A + ++
Sbjct: 1138 IDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH 1197
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
+ + LP G T +G+RG +SGGQKQR+++ARA+ N + + D+ SALD + V
Sbjct: 1198 NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
+ R G+T +++ ++L+ + D I +V G + E+GT L + + KL +
Sbjct: 1258 EALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQ 1314
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 2/233 (0%)
Query: 905 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++
Sbjct: 338 ATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALERA 1022
G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N+ ++S + EA A
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMA 457
Query: 1023 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 1082
+ D I + GLD + E G S GQRQ IL+LDEAT+A+D ++
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1083 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1135
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T +LL + G
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRG 570
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 149/295 (50%), Gaps = 29/295 (9%)
Query: 232 SLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGY 291
S+ A++R PL L N+ Q + + + L +E++ + + RN
Sbjct: 290 SMIALMR-PLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVT 348
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS------- 344
F++ + + P L NINL IP G VA+VG +G GK++ I++++ + +
Sbjct: 349 FTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKST-IASLITRFYDIDEGEILMDGHD 406
Query: 345 ------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--- 395
A +R VA V Q +FN TV +NI + + +R E+ + + + +D
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSR-EQIEEAARMAYAMDFINK 465
Query: 396 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
+ G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD +R I+
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-----ERAIQ 520
Query: 456 GEL----SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 506
L +T +++ ++L + + D I++V +G++ E GT DL + ++ +L
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 12/266 (4%)
Query: 871 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 930
EN + ++ +LP PL + R I+FE+V Y + L +S
Sbjct: 26 ENMFDLLKEETEVKDLPGAGPLRFQKGR----------IEFENVHFSY-ADGRETLQDVS 74
Query: 931 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 990
FT+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++P
Sbjct: 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134
Query: 991 QSPVLFSGTVRFNLDPFSEHSDADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVG 1049
Q VLF+ T+ N+ + D EA + A + DAI G QV E G S G
Sbjct: 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 1050 QRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1109
++Q I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 1110 CDRILLLDSGRVLEYDTPEELLSNEG 1135
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 30/285 (10%)
Query: 256 VSLKRMEEFLLAEEKIL-LPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 313
+ ++ M + L E ++ LP PL I N +FS+ R TL +++ + G
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPG 80
Query: 314 SLVAIVGGTGEGKTSLISAML--------------GELPPVSDASAVIRGTVAYVPQVSW 359
+A+VG +G GK++++ + ++ V+ AS +R + VPQ +
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQAS--LRSHIGVVPQDTV 138
Query: 360 IFNATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 418
+FN T+ DNI +G E A + + P G T++GERG+ +SGG+KQR
Sbjct: 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 419 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL----SGKTRVLVTNQLHFLS 474
V++AR + + + D+ SALD +R I+ L + +T ++V ++L +
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTS-----NERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 475 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 519
D+I+++ +G + E G E L + G ++ + + EE E+
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSED 298
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 119
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 116
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 175
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 122
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 181
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 121
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 118
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 177
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR G+GKS++ + R E G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 121
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG G GK++L + P +
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 118
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 177
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 6/243 (2%)
Query: 908 SIKFEDVVLRYRPELPP-VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADLWEALERAHLK 1025
I I G ++ K+ +R I+GI+PQ +LF+ T+++N L + +D ++ +A + A L
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I D V G S G+RQ KI++ DEAT+++D +T+ L Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM--VQ 1143
K + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M +Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMWNMQ 254
Query: 1144 STG 1146
S G
Sbjct: 255 SGG 257
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 18/225 (8%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------ 345
FS+ + TL +IN IP G+ A+VG TG GK+++ + D
Sbjct: 25 FSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN 84
Query: 346 -----VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS---LQHDLDLLP 397
IR + VPQ + +FN T++ NIL+G A E+ I T L ++ LP
Sbjct: 85 KYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALP 142
Query: 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+ +F + +
Sbjct: 143 KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDL 201
Query: 458 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN-NGE 501
+T +++ ++L +S + IIL+++G + E+GT +DL NGE
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGE 246
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ D+AT+A+D ++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 122
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD SALD +
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESE 181
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 119
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIA RL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 116
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 175
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ +L + DRII++ +G + E+G ++L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 5/238 (2%)
Query: 909 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 968
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 969 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 1025
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 1026 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1086 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1143
+ + + K T++IIA RL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 285 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 344 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 390
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 122
Query: 391 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 447
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 181
Query: 448 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
V R + G+T +++ +L + DRII++ +G + E+G ++L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 2/210 (0%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+L +SF P+ + G +G GKS++ + L R + G I IDG I L + R
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 985 ILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 1042
+G + Q + +GT+R NL E ++D DLW+ L+ A + + L+ +V E
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 1043 GENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1102
G S GQRQ KIL+LDEATA++D +++++QK + K T L+IAH
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 1103 RLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
RL+TI+D D+I ++ G++ EL++
Sbjct: 197 RLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-------LGEL 337
+S R+ F++D + L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 338 P----PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 390
P+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 391 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE-SESMV 178
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 505
+ + + G+T +++ ++L + D+I + +G + G +L L+ K
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 16/247 (6%)
Query: 907 GSIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
G +KF+DV Y P P VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEA 1018
G++L+DG + ++ L + + Q P+LF + R N+ P E A E+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 1078
AH D I G D +V E G S GQRQ ++L+LD+AT+A+D
Sbjct: 134 --GAH--DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 1079 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
+Q+ + E E+ S T+L+I H+L+ IL L G V E T +L+ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM-ERGG 248
Query: 1137 SFSKMVQ 1143
+ MV+
Sbjct: 249 CYRSMVE 255
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-------------P 338
F++ + L + + G + A+VG G GK++ ++A+L L P
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEP 82
Query: 339 PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 396
V + VA V Q +F + R+NI +G P E A+ + S HD +
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDR 452
P G TE+GE G +SGGQ+Q V++ARA+ + I D SALDA V R +++
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYES 202
Query: 453 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
E + +T +L+T+QL + I+ + EG V E+GT L G ++ ++E
Sbjct: 203 P---EWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 16/247 (6%)
Query: 907 GSIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
G +KF+DV Y P P VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEA 1018
G++L+DG + ++ L + + Q P+LF + R N+ P E A E+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 1078
AH D I G D +V E G +VGQRQ ++L+LD AT+A+D
Sbjct: 134 --GAH--DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 1079 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM-ERGG 248
Query: 1137 SFSKMVQ 1143
+ MV+
Sbjct: 249 CYRSMVE 255
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 23/236 (9%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-------------P 338
F++ + L + + G + A+VG G GK++ ++A+L L P
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEP 82
Query: 339 PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 396
V + VA V Q +F + R+NI +G P E A+ + S HD +
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDR 452
P G TE+GE G ++ GQ+Q V++ARA+ + I D+ SALDA V R +++
Sbjct: 143 PQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 453 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
E + +T +L+T QL + I+ + EG V E+GT L G ++ ++E
Sbjct: 203 P---EWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 16/247 (6%)
Query: 907 GSIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 964
G +KF+DV Y P P VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 965 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEA 1018
G++L+DG + ++ L + + Q P+LF + R N+ P E A E+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1019 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 1078
AH D I G D +V E G S GQRQ ++L+LD AT+A+D
Sbjct: 134 --GAH--DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 1079 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1136
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM-ERGG 248
Query: 1137 SFSKMVQ 1143
+ MV+
Sbjct: 249 CYRSMVE 255
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-------------P 338
F++ + L + + G + A+VG G GK++ ++A+L L P
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEP 82
Query: 339 PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 396
V + VA V Q +F + R+NI +G P E A+ + S HD +
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDR 452
P G TE+GE G +SGGQ+Q V++ARA+ + I D+ SALDA V R +++
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 453 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 508
E + +T +L+T QL + I+ + EG V E+GT L G ++ ++E
Sbjct: 203 P---EWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 97.1 bits (240), Expect = 6e-20, Method: Composition-based stats.
Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 20/264 (7%)
Query: 899 PPPGWPS----SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 952
PP G + G ++F+DV Y RP++ VL GL+FT+ P + +VG G+GKS++
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 953 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 1006
L + + G++L+DG + ++ L + + + Q P +F +++ N+ P
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP 119
Query: 1007 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKI 1066
E A A ++ I G D +V EAG S GQRQ +
Sbjct: 120 TMEEITA----AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV 175
Query: 1067 LVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1124
L+LD+AT+A+D + +++ + E E S ++L+I L+ + D IL L+ G + E
Sbjct: 176 LILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREG 235
Query: 1125 DTPEELLSNEGSSFSKMVQSTGAA 1148
T ++L+ +G ++ MVQ+ A
Sbjct: 236 GTHQQLMEKKGCYWA-MVQAPADA 258
Score = 86.7 bits (213), Expect = 7e-17, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 27/248 (10%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT- 350
F++ ++ + L + + G + A+VG G GK++ ++A+L L + ++ G
Sbjct: 22 FAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKST-VAALLQNLYQPTGGQLLLDGKP 80
Query: 351 ------------VAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 396
VA V Q +F ++++NI +G +P E A V S H + L
Sbjct: 81 LPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGL 140
Query: 397 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 456
P G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 141 PQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 200
Query: 457 -ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 515
E ++ +L+T L + Q D I+ + G ++E GT Q+LME G
Sbjct: 201 PERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGT----------HQQLMEKKGCYWA 250
Query: 516 YVEEKEDG 523
V+ D
Sbjct: 251 MVQAPADA 258
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 34/224 (15%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQ---V 357
++ ++ I G +V ++G +G GKT+++ + G E P D + PQ V
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 358 SWIF-------NATVRDNILFGSAFE-------PARYEKAIDVTSLQHDLDLLPGGDVTE 403
+F + TV DN+ FG + AR + + L+ + P
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH----- 144
Query: 404 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGK 461
+SGGQ+QRV++ARA+ V +FD+P +A+D + R++ F R + E+ G
Sbjct: 145 ------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GV 197
Query: 462 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGELF 503
T V VT +Q L DR++++HEG V++ GT E++ G LF
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 103/216 (47%), Gaps = 8/216 (3%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
+ G+SF I + VG++G +G+GK+++L + + +G + I G + L ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRN 88
Query: 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+G++ Q+ LF ++ F + ++ A +++ +R + L++ +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-ARVRELLR--FMRLESYANRFPHE 145
Query: 1046 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHR 1103
S GQ+Q ++L+ DE AA+D + ++ +R+ + T + + H
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
Query: 1104 LNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
++ DR+L+L G V ++ TPEE+ G+ F
Sbjct: 206 QEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 11/216 (5%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLR 983
L G++ I + I+G G GKS++ I++ GRIL D D ++ G+M LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 984 KILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 1041
+ +GI+ Q P LFS +V ++ F + L E R + +A++R G++ +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVS-FGA-VNMKLPEDEIRKRVDNALKRT--GIEHLKDK 139
Query: 1042 AGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLI 1099
S GQ++ K+L+LDE TA +D + I K + E K T++I
Sbjct: 140 PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 1100 IAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 1134
H ++ + + CD + ++ GRV+ P+E+ + +
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 39/248 (15%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV---------I 347
L IN++I G + AI+GG G GK++L G L P S D + +
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 348 RGTVAYVPQ--VSWIFNATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDLLPG 398
R ++ V Q + +F+A+V ++ FG+ R + A+ T ++H D
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD---- 138
Query: 399 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 458
+ +S GQK+RV++A + V I D+P + LD ++ + +
Sbjct: 139 -------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 459 S-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL---MENAGKM 513
G T ++ T+ + + D + ++ EG V +G +++ E+ +K+ + G +
Sbjct: 192 ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHL 251
Query: 514 EEYVEEKE 521
E ++EK+
Sbjct: 252 MEILKEKD 259
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 20/208 (9%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----DASA----VIRGTVAY 353
L ++N + G + +VG G GKT+L+ + G L D S ++R V Y
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 354 VPQ--VSWIFNATVRDNILFG---SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408
V Q S I ATV +++ F + + K I L L D
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADP------- 138
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 468
+N+SGGQKQR+++A + ++ D+P+S LD R++F + GK +LVT+
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 469 QLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+L +L +D I+ + G + G++E+
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEF 226
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 27/205 (13%)
Query: 941 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSG 998
+VG+ G+GK+++L L ++ G I +DG F LRK +G + Q+P +
Sbjct: 42 VVGKNGSGKTTLLKILAGLLA-AAGEIFLDGSPADPFL---LRKNVGYVFQNPSSQIIGA 97
Query: 999 TVR----FNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQ 1052
TV F+L+ L+ + ++ I++ +GL + N S GQ+Q
Sbjct: 98 TVEEDVAFSLEIM----------GLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQ 147
Query: 1053 XXXXXXXXXXXXKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1109
+ L LDE + +D R + ++++ E K ++++ H L + D
Sbjct: 148 RLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG--IILVTHELEYLDD 205
Query: 1110 CDRILLLDSGRVLEYDTPEELLSNE 1134
D IL + +G + + EE + E
Sbjct: 206 MDFILHISNGTIDFCGSWEEFVERE 230
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 35/216 (16%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVS 358
L NINL I G +A++G +G GK++L+ + G P S V +P V
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 359 WIF-------NATVRDNILFGSAFEPARYE----KAIDVTSLQHDLDLLPGGDVTEIGER 407
+F + TV NI F A E K +V + H LL
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL--------NRY 130
Query: 408 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GK 461
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL G
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKELGI 185
Query: 462 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
T V VT +Q L+ DRI ++ EG + + GT +++
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
IK E++V ++ L+ ++ I + + ++G +G+GKS++L T+ I + G+I
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 1027
D D+ + D + +G++ Q+ L+ + F +L +A R +
Sbjct: 61 YFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFP----LELRKA-PREEIDKK 113
Query: 1028 IRR--NSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 1085
+R L +D ++ S GQ+Q ++L+LDE + + DAL++
Sbjct: 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNL----DALLR 169
Query: 1086 KTIREEFK------SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+R E K T + + H + + DRI ++ G +L+ TP+E+ F
Sbjct: 170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 53/218 (24%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-----------------ELPPVSDASAVI 347
+INLDI G V VG +G GK++L+ + G + PP ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 348 RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-------KAIDVTSLQHDLDLLPGGD 400
+ A P +S V +N+ FG A+ E + +V L H LD P
Sbjct: 81 FQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 459
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q +R E+S
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ-----MRIEISR 178
Query: 460 -----GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 491
G+T + VT +Q+ ++ D+I+++ G V + G
Sbjct: 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 1046 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH- 1102
S GQRQ + +LDE + +D +R I+ + + TM+ + H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1103 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
++ + D+I++LD+GRV + P EL F
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 53/218 (24%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-----------------ELPPVSDASAVI 347
+INLDI G V VG +G GK++L+ + G + PP ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 348 RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-------KAIDVTSLQHDLDLLPGGD 400
+ A P +S V +N+ FG A+ E + +V L H LD P
Sbjct: 81 FQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 459
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q +R E+S
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ-----MRIEISR 178
Query: 460 -----GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 491
G+T + VT +Q+ ++ D+I+++ G V + G
Sbjct: 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 1046 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH- 1102
S GQRQ + +LDE + +D +R I+ + + TM+ + H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1103 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
++ + D+I++LD+GRV + P EL F
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 398 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
G D G+ V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +V +
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200
Query: 458 LSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 499
GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 201 EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 1045 NFSVGQRQXXXXXXXXXXXXKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIA 1101
+ S GQ+Q +L+ DE T+A+D V I + + EE K TM+++
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK--TMVVVT 210
Query: 1102 HRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 1136
H + ++ L G++ E PE++ N S
Sbjct: 211 HEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 53/218 (24%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-----------------ELPPVSDASAVI 347
+INLDI G V VG +G GK++L+ + G + PP ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 348 RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-------KAIDVTSLQHDLDLLPGGD 400
+ A P +S V +N+ FG A+ E + +V L H LD P
Sbjct: 81 FQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 401 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 459
+SGGQ+QRV++ R + + VF+ D PLS LDA + Q +R E+S
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQ-----MRIEISR 178
Query: 460 -----GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 491
G+T + VT +Q+ ++ D+I+++ G V + G
Sbjct: 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 1046 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH- 1102
S GQRQ + +LD+ + +D +R I+ + + TM+ + H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1103 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
++ + D+I++LD+GRV + P EL F
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 24/234 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 982
L+ +S +P G++G +GAGKS+++ + + G +L+DG ++ L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 983 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRR------NSLGL 1035
R+ +G+I Q L S F ++ LE + KD ++R + +GL
Sbjct: 81 RRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEVKRRVTELLSLVGL 130
Query: 1036 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK-- 1093
+ N S GQ+Q K+L+ DEAT+A+D T I + +++ +
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL 190
Query: 1094 SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 1145
T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + + K +QST
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQST 244
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 120/237 (50%), Gaps = 27/237 (11%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGTVAYVPQVSWIFNA 363
N++L +P G + ++G +G GK++LI + L E P ++ S ++ G S + A
Sbjct: 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELTKA 80
Query: 364 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV----TEI------GERG----V 409
+ ++F F +L +LD P +V TE+ G++
Sbjct: 81 RRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 139
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 467
N+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I L G T +L+T
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLIT 198
Query: 468 NQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE--LFQKLMENAGKM---EEYVE 518
+++ + ++ D + ++ G + E+ T ++ ++ + L QK +++ + E+Y E
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 255
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 284 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
A+S+ N F + +AE +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 4 ALSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 344 SAVIRGTVAYVPQV-SWIFNATVRDNILFGSAFEPARYEK--AIDVTSLQHDLDLLPGGD 400
V + ++ +VPQ S F +V D +L G + + K + D LD L +
Sbjct: 62 IEVYQ-SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL---N 117
Query: 401 VTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+T + +R ++SGGQ+Q + +ARA+ S + + D+P SALD
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 41/242 (16%)
Query: 908 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 967
++ E++ Y+ E + L+F + D + ++G+ G GKS++L+ L I +G+I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 968 LIDGFDIAKFGLMDLRKILGIIPQ---SPVLFS-------GTVRFNLDPFSEHSDADL-- 1015
++ + +G +PQ SP +S G +++ F++ D
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRST-HINTFAKPKSHDYQV 108
Query: 1016 -WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATA 1074
+AL+ +L +R L S GQRQ K+++LDE T+
Sbjct: 109 AMQALDYLNLTHLAKREFTSL-----------SGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1075 AVDVRTDALIQKTIREEFKSCTMLII--AHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1132
A+D+ ++ + + +S M ++ H+ N ++ LL + + ++ +L+
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILT 217
Query: 1133 NE 1134
+E
Sbjct: 218 SE 219
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 24/234 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 982
L+ +S +P G++G +GAGKS+++ + + G +L+DG ++ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 983 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRR------NSLGL 1035
R+ +G+I Q L S F ++ LE + KD ++R + +GL
Sbjct: 104 RRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 1036 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK-- 1093
+ N S GQ+Q K+L+ D+AT+A+D T I + +++ +
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1094 SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 1145
T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + + K +QST
Sbjct: 214 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQST 267
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 120/239 (50%), Gaps = 27/239 (11%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGTVAYVPQVSWIF 361
L N++L +P G + ++G +G GK++LI + L E P ++ S ++ G S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELT 101
Query: 362 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV----TEI------GERG--- 408
A + ++F F +L +LD P +V TE+ G++
Sbjct: 102 KARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 409 -VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVL 465
N+SGGQKQRV++ARA+ SN V + D SALD R + + + I L G T +L
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILL 219
Query: 466 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE--LFQKLMENAGKM---EEYVE 518
+T+++ + ++ D + ++ G + E+ T ++ ++ + L QK +++ + E+Y E
Sbjct: 220 ITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 30/212 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 347
L N+NL+I G V+I+G +G GK+++++ ++G L ++ I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 348 --RGTVAYV-PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
R + +V Q + I T +N+ F +Y A+ + + L + E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGAM--SGEERRKRALECLKMAEL 134
Query: 405 GERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL 458
ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++ + E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 459 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490
GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 43/239 (17%)
Query: 909 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
IK ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 967 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE-- 1020
+ ID +L KI +G + Q +FNL P L ALE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIP--------LLTALENV 104
Query: 1021 --------RAHLKDAIRRNSLGLDAQVSEAGENF--------SVGQRQXXXXXXXXXXXX 1064
R + RR +++E E F S GQ+Q
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 1065 KILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
I++ D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 165 PIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI--AKFGLMDL 982
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 983 RKILGIIPQSPVLFSGTVRFN---LDPFS------EHSDADLWEALERAHLKDAIRRNSL 1033
R+ +G++ Q LF N L P E ++A E L++ LKD
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 130
Query: 1034 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE-EF 1092
+ ++ S GQ Q KI++ DE T+A+D + +++
Sbjct: 131 ----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1093 KSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELL 1131
+ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT----------- 350
L IN+ I G +V ++G +G GK++ + L L + +I G
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRC-LNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 351 ----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
V V Q +F + TV +NI P + K + ++LL D +
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGLK 129
Query: 406 ERGV----NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 461
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 130 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 189
Query: 462 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
T V+VT+++ F +V DR++ + G + EEG EDL
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI--AKFGLMDL 982
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 983 RKILGIIPQSPVLFSGTVRFN---LDPFS------EHSDADLWEALERAHLKDAIRRNSL 1033
R+ +G++ Q LF N L P E ++A E L++ LKD
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 151
Query: 1034 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE-EF 1092
+ ++ S GQ Q KI++ DE T+A+D + +++
Sbjct: 152 ----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1093 KSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELL 1131
+ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT----------- 350
L IN+ I G +V ++G +G GK++ + L L + +I G
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRC-LNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 351 ----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
V V Q +F + TV +NI P + K + ++LL D +
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNI----TLAPMKVRKWPREKAEAKAMELL---DKVGLK 150
Query: 406 ERGV----NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 461
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 210
Query: 462 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 496
T V+VT+++ F +V DR++ + G + EEG EDL
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 24/234 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 982
L+ +S +P G++G +GAGKS+++ + + G +L+DG ++ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 983 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRR------NSLGL 1035
R+ +G I Q L S F ++ LE + KD ++R + +GL
Sbjct: 104 RRQIGXIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 1036 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK-- 1093
+ N S GQ+Q K+L+ D+AT+A+D T I + +++ +
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 1094 SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 1145
T+L+I H + + CD + ++ +G ++E DT E+ S+ + + K +QST
Sbjct: 214 GLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQST 267
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 27/239 (11%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGTVAYVPQVSWIF 361
L N++L +P G + ++G +G GK++LI + L E P ++ S ++ G S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELT 101
Query: 362 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV----TEI------GERG--- 408
A + +F F +L +LD P +V TE+ G++
Sbjct: 102 KARRQIGXIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 409 -VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVL 465
N+SGGQKQRV++ARA+ SN V + D SALD R + + + I L G T +L
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILL 219
Query: 466 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE--LFQKLMENAGKM---EEYVE 518
+T++ + ++ D + ++ G + E+ T ++ ++ + L QK +++ + E+Y E
Sbjct: 220 ITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 30/212 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 347
L N+NL+I G V+I+G +G GK+++++ ++G L ++ I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 348 --RGTVAYV-PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
R + +V Q + I T +N+ F +Y A+ + + L + E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGAM--SGEERRKRALECLKMAEL 134
Query: 405 GERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL 458
ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++ + E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 459 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490
GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 43/239 (17%)
Query: 909 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 967 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE-- 1020
+ ID +L KI +G + Q +FNL P L ALE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIP--------LLTALENV 104
Query: 1021 --------RAHLKDAIRRNSLGLDAQVSEAGENF--------SVGQRQXXXXXXXXXXXX 1064
R + RR +++E E F S GQ+Q
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 1065 KILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
I++ D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 165 PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 42/236 (17%)
Query: 302 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGT 350
+L N++L + G I+G TG GKT + + G P V+D S +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE-KHD 73
Query: 351 VAYVPQVSWIF-NATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+A+V Q +F + V+ N+ FG +P R ++H LD P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 465
+ +SGG++QRV++ARA+ +N + + D+PLSALD Q R + L K ++
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT--QENAREMLSVLHKKNKLT 180
Query: 466 VTNQLHFLSQ----VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYV 517
V + H ++ DRI +V +G + + G E E+F+K +E G++ +V
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPE------EIFEKPVE--GRVASFV 228
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 27/217 (12%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L LS + + I+G TGAGK+ L + + GRIL+DG D+ L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHD 73
Query: 986 LGIIPQSPVLFSG-TVRFNLD---PFSEHSDA----DLWEALERAHLKDAIRRNSLGLDA 1037
+ + Q+ LF V+ NL+ + D D L+ HL D RN L L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD---RNPLTL-- 128
Query: 1038 QVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRT--DALIQKTIREEFKSC 1095
S G++Q KIL+LDE +A+D RT +A ++ +
Sbjct: 129 ---------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 1096 TMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELL 1131
T+L I H + I DRI ++ G++++ PEE+
Sbjct: 180 TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 907 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
G++ +D LR R +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 14 GAVVVKD--LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 967 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGT-----VRFNLDPFSEHSDADLWEALER 1021
+ + G ++ + ++RK++ +P+ + +RF + F S +++ E +ER
Sbjct: 72 VTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRF-VAGFYASSSSEIEEMVER 129
Query: 1022 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTD 1081
A GL ++ + +S G + ++ +LDE T+ +DV
Sbjct: 130 AT-------EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 1082 ALIQKTIREEFK-SCTMLIIAHR-LNTIIDCDRILLLDSGRVLEYDTPEEL 1130
++K +++ + T+L+ +H L CDRI L+ +G ++E T EEL
Sbjct: 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 25/231 (10%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 346
++ L I+ +I G + ++G G GKT+ + + + P S V
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 347 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 405
+R ++Y+P+ + + N + + F + F + + ++ ++ G +I
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI----AGLGEKIK 141
Query: 406 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 465
+R S G +++ +ARA+ N + I D+P S LD R+V + G T +L
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT-IL 200
Query: 466 VT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLS------NNGELFQKLME 508
V+ N L DRI L+H G + E GT E+L N E+F+++++
Sbjct: 201 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 347
L N+NL+I G V+I G +G GK++ ++ ++G L ++ I
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 348 --RGTVAYV-PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
R + +V Q + I T +N+ F +Y A + + L E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGA--XSGEERRKRALECLKXAEL 134
Query: 405 GERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL 458
ER N +SGGQ+QRV++ARA+ +N + + D+P ALD+ G ++ + E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 459 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 490
GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 909 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 966
IK ++V Y+ E+ L ++ I + V I G +G+GKS+ LN + + + G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 967 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRFNLDPFS---EHSDADLWEAL 1019
+ ID +L KI +G + Q +FNL P E+ + L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIPLLTALENVELPLIFKY 112
Query: 1020 ERAHLKDAIRRNSLGL--DAQVSEAGEN-----FSVGQRQXXXXXXXXXXXXKILVLDEA 1072
A + R+ +L A++ E N S GQ+Q I++ DE
Sbjct: 113 RGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEP 172
Query: 1073 TAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 1121
T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 173 TGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV 351
F + E+ L N++L I G + + G TG GK++L+ + G + P S G V
Sbjct: 12 FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS-------GDV 64
Query: 352 AYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLP----- 397
Y + + +R NI G AF E E A V + D D +P
Sbjct: 65 LYDGERKKGYE--IRRNI--GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 398 ----GGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
G D +R +SGG+K+RV++A + D+ I D+PL LD +
Sbjct: 121 MEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 453 CIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGT 492
+ + GKT +L+++ + ++ VDR++++ +G +GT
Sbjct: 181 VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 35/249 (14%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L +S I + + + G TG+GKS++L + ++E G +L DG + ++R+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79
Query: 986 LGIIPQSP--VLFS----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
+GI Q P F+ V F + F D +K A+ L D+
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP-------VPLVKKAMEFVGLDFDSFK 132
Query: 1040 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV--RTDALIQKTIREEFKSC-- 1095
S G+++ IL+LDE +D +TD L I E++K+
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL---RIVEKWKTLGK 189
Query: 1096 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF--SKMVQSTGAANAQY 1152
T+++I+H + T+I+ DR+++L+ G+ + T E L F SKM+
Sbjct: 190 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML---------V 240
Query: 1153 LRSLVLGGE 1161
+R LVL GE
Sbjct: 241 MRRLVLKGE 249
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 292 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------D 342
F + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 14 FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 73
Query: 343 ASAVIRGTVAYVPQV--SWIFNATVRDNILFG-SAFEPAR-----YEKAIDVTSLQHD-- 392
IR + Q F V D + F F P R +KA++ L D
Sbjct: 74 KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF 133
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
D +P +SGG+K+RV++A + D+ I D+PL LD +
Sbjct: 134 KDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 182
Query: 453 CIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGT 492
+ + GKT +L+++ + ++ VDR++++ +G +GT
Sbjct: 183 VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 223
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 35/249 (14%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L +S I + + + G TG+GKS++L + ++E G +L DG + ++R+
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 81
Query: 986 LGIIPQSP--VLFS----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 1039
+GI Q P F+ V F + F D +K A+ L D+
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP-------VPLVKKAMEFVGLDFDSFK 134
Query: 1040 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV--RTDALIQKTIREEFKSC-- 1095
S G+++ IL+LDE +D +TD L I E++K+
Sbjct: 135 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL---RIVEKWKTLGK 191
Query: 1096 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF--SKMVQSTGAANAQY 1152
T+++I+H + T+I+ DR+++L+ G+ + T E L F SKM+
Sbjct: 192 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML---------V 242
Query: 1153 LRSLVLGGE 1161
+R LVL GE
Sbjct: 243 MRRLVLKGE 251
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 31/208 (14%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWI 360
+NL I G + ++G +G GKT+ + + G P V Y+P +S +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88
Query: 361 FNA-------TVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLLPGGDVTEIGE 406
F + TV +NI F F +K A ++ ++ L+ P
Sbjct: 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 140
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA--HVGRQVFDRCIRGELSGKTRV 464
+SGGQ+QRV++ARA+ DV + D+PLS LDA V + + ++ +L T
Sbjct: 141 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197
Query: 465 LVTNQLHFLSQVDRIILVHEGMVKEEGT 492
+ +Q+ ++ DRI +++ G + + G+
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
L+ TI + + ++G +G GK++ L + + E GRI D+ D R I +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMV 88
Query: 989 IPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
V TV N+ P E W A E +++ + R AQ+S
Sbjct: 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA-ELLQIEELLNRYP----AQLS 143
Query: 1041 EAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTM 1097
GQRQ +L++DE + +D + ++ K ++++ K T+
Sbjct: 144 G-------GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 1098 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+ ++ + DRI +++ G++L+ +P E+ S F
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 31/208 (14%)
Query: 305 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWI 360
+NL I G + ++G +G GKT+ + + G P V Y+P +S +
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 89
Query: 361 FNA-------TVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLLPGGDVTEIGE 406
F + TV +NI F F +K A ++ ++ L+ P
Sbjct: 90 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 141
Query: 407 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA--HVGRQVFDRCIRGELSGKTRV 464
+SGGQ+QRV++ARA+ DV + D+PLS LDA V + + ++ +L T
Sbjct: 142 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 198
Query: 465 LVTNQLHFLSQVDRIILVHEGMVKEEGT 492
+ +Q+ ++ DRI +++ G + + G+
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
L+ TI + + ++G +G GK++ L + + E GRI D+ D R I +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMV 89
Query: 989 IPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
V TV N+ P E W A E +++ + R AQ+S
Sbjct: 90 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA-ELLQIEELLNRYP----AQLS 144
Query: 1041 EAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTM 1097
GQRQ +L++DE + +D + ++ K ++++ K T+
Sbjct: 145 G-------GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 1098 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
+ ++ + DRI +++ G++L+ +P E+ S F
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 294 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA- 352
W + + +++L+I G + ++G +G GKT+ + + G P + VA
Sbjct: 13 WKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD 72
Query: 353 -----YVP----QVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
+VP V+ +F + TV DNI F P + K + ++
Sbjct: 73 PEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAF-----PLKLRKVPKQEIDKRVREVA 127
Query: 397 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
+TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + + R
Sbjct: 128 EXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKX-----R 182
Query: 456 GELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
EL G T + VT +Q+ + DRI + ++G +++ GT +++
Sbjct: 183 AELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 36.6 bits (83), Expect = 0.099, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 14/219 (6%)
Query: 929 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 988
LS I + + ++G +G GK++ L + + E RG+I I+ +A D K + +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVA-----DPEKGVFV 79
Query: 989 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLGLDAQVSEA 1042
P+ + + L P D + R K I + LGL ++
Sbjct: 80 PPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK 139
Query: 1043 GENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLI 1099
S GQRQ K+ + DE + +D + + K ++ + T+ +
Sbjct: 140 PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYV 199
Query: 1100 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1138
++ DRI + + G + + TP+E+ ++F
Sbjct: 200 THDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTF 238
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 35/231 (15%)
Query: 294 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA- 352
W E + ++L++ G + ++G +G GKT+ + + G P + VA
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69
Query: 353 -----YVP----QVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 396
+VP ++ +F + TV DNI F P + K Q ++
Sbjct: 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF-----PLKLRKVPRQEIDQRVREVA 124
Query: 397 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 455
+TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + + +R
Sbjct: 125 ELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR-----MR 179
Query: 456 GELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
EL G T + VT +Q+ ++ DRI +++ G++++ G+ +++ +
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 16/208 (7%)
Query: 941 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 1000
++G +G GK++ L + + E RG+I I +A D K + + P+ +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA-----DPEKGIFVPPKDRDIAMVFQ 88
Query: 1001 RFNLDPFSEHSDADLW----EALERAHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQXX 1054
+ L P D + + R + +R + LGL ++ S GQRQ
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV 148
Query: 1055 XXXXXXXXXXKILVLDEATAAVD----VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1110
++ ++DE + +D VR A ++K ++ + T+ + ++ +
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYVTHDQVEAMTMG 207
Query: 1111 DRILLLDSGRVLEYDTPEELLSNEGSSF 1138
DRI +++ G + + +P+E+ ++F
Sbjct: 208 DRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 27/212 (12%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWIF 361
++ ++ G VA++G +G GKT+ + + G P S V +P +V +F
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 362 -------NATVRDNILF---GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
+ TV +NI F EK + + + +D L + + +
Sbjct: 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-------LDRKPTQL 134
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD---RCIRGELSGKTRVLVT- 467
SGGQ+QRV++ARA+ V +FD+PLS LDA++ R + + ++ EL G T V VT
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANL-RMIMRAEIKHLQQEL-GITSVYVTH 192
Query: 468 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+Q ++ RI + ++G + + GT +++ ++
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 104/243 (42%), Gaps = 12/243 (4%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
+ G+SF + + V ++G +G GK++ L L I + G I D D+ + +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYRE 76
Query: 986 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 1045
+G++ Q+ L+ F F + + +E+ ++ A L +D +
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA---RKLLIDNLLDRKPTQ 133
Query: 1046 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAH 1102
S GQ+Q K+L+ DE + +D +++ K +++E ++ +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 1103 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEA 1162
+ + RI + + G++++Y TP+E+ + + F + G +LR +
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF--VASFIGNPPTNFLRDFSVS--V 249
Query: 1163 ENK 1165
ENK
Sbjct: 250 ENK 252
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 10/211 (4%)
Query: 937 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 996
D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALF 82
Query: 997 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXX 1056
+ + + + + + LG+ + S G+RQ
Sbjct: 83 PHLSVYRNIAYGLRNVERVERDRRVREMAE-----KLGIAHLLDRKPARLSGGERQRVAL 137
Query: 1057 XXXXXXXXKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIIDCDRI 1113
++L+LDE +AVD++T ++ + +R EF + + + + D +
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 1114 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1144
++ +GR++E +EL S + ++ + +
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 32/218 (14%)
Query: 306 INLDIPVG-SLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVI------RGTVAYV 354
+N+D +G ++G TG GK+ + + G + P V A I R + +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 355 PQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 408
PQ +F + +V NI +G R + + + H LD P
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA---------- 125
Query: 409 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLV 466
+SGG++QRV++ARA+ + + D+PLSA+D + + R ++ E +
Sbjct: 126 -RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 467 TNQLHFLSQVDRIILVHEGMVKEEGTFEDL--SNNGEL 502
+ + D + ++ G + E+G ++L + NGE+
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 23/185 (12%)
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 368
+I G ++ IVG G GKT+ + + G P ++ TVAY PQ
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEWDLTVAYKPQ------------ 424
Query: 369 ILFGSAFEPARYE--KAIDVTSLQHDL---DLLPGGDVTEIGERGV-NISGGQKQRVSMA 422
+ +E YE ID + L + +LL + ++ +R V ++SGG+ QRV++A
Sbjct: 425 -YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 483
Query: 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRII 480
+ ++D+++ D+P + LD R R IR E + KT ++V + + + V +
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVE-QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542
Query: 481 LVHEG 485
+V EG
Sbjct: 543 IVFEG 547
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 56/216 (25%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTVAYVPQVSWIFNATVRDNIL 370
G +V IVG G GKT+ + + G+L P D SW DN++
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDND-------------SW-------DNVI 156
Query: 371 -------FGSAFEPARYEKAIDVTSLQHDLDLLPGG----------DVTEIG-------- 405
+ FE + + V Q+ +DLLP V E+G
Sbjct: 157 RAFRGNELQNYFERLKNGEIRPVVKPQY-VDLLPKAVKGKVRELLKKVDEVGKFEEVVKE 215
Query: 406 -------ERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
+R ++ +SGG+ QRV++A A+ + + FD+P S LD +V R
Sbjct: 216 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275
Query: 458 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493
GK ++V + L L + +I V G G F
Sbjct: 276 NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 311
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 23/185 (12%)
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 368
+I G ++ IVG G GKT+ + + G P ++ TVAY PQ
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEWDLTVAYKPQ------------ 410
Query: 369 ILFGSAFEPARYE--KAIDVTSLQHDL---DLLPGGDVTEIGERGV-NISGGQKQRVSMA 422
+ +E YE ID + L + +LL + ++ +R V ++SGG+ QRV++A
Sbjct: 411 -YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
Query: 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRII 480
+ ++D+++ D+P + LD R R IR E + KT ++V + + + V +
Sbjct: 470 ATLLRDADIYLLDEPSAYLDVE-QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
Query: 481 LVHEG 485
+V EG
Sbjct: 529 IVFEG 533
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 56/216 (25%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTVAYVPQVSWIFNATVRDNIL 370
G +V IVG G GKT+ + + G+L P D SW DN++
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDND-------------SW-------DNVI 142
Query: 371 -------FGSAFEPARYEKAIDVTSLQHDLDLLPGG----------DVTEIG-------- 405
+ FE + + V Q+ +DLLP V E+G
Sbjct: 143 RAFRGNELQNYFERLKNGEIRPVVKPQY-VDLLPKAVKGKVRELLKKVDEVGKFEEVVKE 201
Query: 406 -------ERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
+R ++ +SGG+ QRV++A A+ + + FD+P S LD +V R
Sbjct: 202 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 261
Query: 458 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493
GK ++V + L L + +I V G G F
Sbjct: 262 NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 297
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 23/185 (12%)
Query: 309 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 368
+I G ++ IVG G GKT+ + + G P ++ TVAY PQ
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEP-TEGKIEWDLTVAYKPQ------------ 354
Query: 369 ILFGSAFEPARYE--KAIDVTSLQHDL---DLLPGGDVTEIGERGVN-ISGGQKQRVSMA 422
+ +E YE ID + L + +LL + ++ +R VN +SGG+ QRV++A
Sbjct: 355 -YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIA 413
Query: 423 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRII 480
+ ++D+++ D+P + LD R R IR E + KT ++V + + + V +
Sbjct: 414 ATLLRDADIYLLDEPSAYLDVEQ-RLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRL 472
Query: 481 LVHEG 485
V EG
Sbjct: 473 XVFEG 477
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 46/211 (21%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASA---VIR----------------GTV 351
G +V IVG G GK++ + + G+L P D + VIR G +
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 352 AYV--PQVSWIFNATVRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 407
V PQ + V+ + L A E + E+ + L++ L ER
Sbjct: 107 RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL------------ER 154
Query: 408 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS--GKT 462
+ ++SGG+ QRV++A A+ N+ + FD+P S LD RQ + R IR LS GK+
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI---RQRLNAARAIR-RLSEEGKS 210
Query: 463 RVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 493
++V + L L + II V G G F
Sbjct: 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIF 241
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 36/229 (15%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVS-----DASAVIRG 349
K + L N+N++I G I+G +G GKT+ + + G ++P D G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 350 TVAYVPQ---VSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHD 392
+ P+ + +F N T +NI F S E R E+ + + H
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV--GRQVF 450
L+ P +SGGQ+QRV++ARA+ + + + D+P S LDA + +
Sbjct: 134 LNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ ++ L V+ + + DR+ ++ +G + + G EDL +N
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 15/217 (6%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM----D 981
L ++ I ++ GI+G +GAGK++ + + + G + D +A G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 982 LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ--V 1039
RKI G++ Q+ L+ NL F + + + ++ + + LD +
Sbjct: 81 DRKI-GMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 1040 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 1097
+ S GQ+Q +L+LDE + +D R + ++E T+
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 1098 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
L+++H I DR+ +L G++++ PE+L N
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 928 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLR 983
G+S I + IVG + +GKS+++ + + + + GR+L G D+ +LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 984 KI----LGIIPQSPVLFSGTVRFNLDPFSEHSDAD--LW---EALERAHLKDAIRRNSLG 1034
KI + ++PQ+ ++ F + +A W E +E+A + +R L
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKA--SEKLRMVRLN 143
Query: 1035 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALI--QKTIREEF 1092
+A ++ S G +Q +L+LDE T+A+DV T A I ++
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 1093 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQSTGAANA 1150
T++ + H + + D++ ++ G ++EY++ ++ N +++ ++ S A NA
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLINSIMAVNA 263
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 32/222 (14%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGT------------ 350
I+LDI S+ AIVG + GK+++I AM LPP + + +G
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 351 -----VAYVPQVSW-IFNATVRDNILFGSAFEP--ARYEKAIDVTSLQHDLDLLPGGDVT 402
+A VPQ + N T++ F E R+ + + L ++
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD----AHVGRQVFDRCIRGEL 458
+ + +SGG KQRV +A A+ + V I D+P SALD AH+ + + + ++
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 459 SGKTRVLVTNQLHFLSQV-DRIILVHEG-MVKEEGTFEDLSN 498
T + VT+ + +++ D++ +++ G +V+ TF+ N
Sbjct: 207 ---TLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKN 245
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 34/238 (14%)
Query: 299 ERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV------------SDASA 345
++ L+N ++L I G +VAI+G G GK++L+ + G L P S
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK 81
Query: 346 VIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 404
+ T A + Q S + F +V + I G A Y + D +LQ ++ D +
Sbjct: 82 ALARTRAVMRQYSELAFPFSVSEVIQMGR----APYGGSQDRQALQQ---VMAQTDCLAL 134
Query: 405 GERGVNI-SGGQKQRVSMARAVYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRGE 457
+R + SGG++QRV +AR + D+P SALD + + R +R +
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLR-Q 192
Query: 458 LSGKTRVLVTNQLHFLS----QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 511
L+ + + V LH L+ DRI+L+ +G + GT E++ N L Q + G
Sbjct: 193 LTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLG 250
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 24/233 (10%)
Query: 916 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 975
L Y + +++ +S I + V I+G GAGKS++L L + G + G ++
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76
Query: 976 KFGLMDLRKILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 1030
+ L + ++ Q P S ++ P+ D +AL++ +
Sbjct: 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR---QALQQV----MAQT 129
Query: 1031 NSLGL---DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV----RTDAL 1083
+ L L D +V GE V + + L LDE T+A+D+ T L
Sbjct: 130 DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 1084 IQKTIREE-FKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
+++ R+E C +L H LN + DRI+LL G+++ TPEE+L+ E
Sbjct: 190 LRQLTRQEPLAVCCVL---HDLNLAALYADRIMLLAQGKLVACGTPEEVLNAE 239
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 35/217 (16%)
Query: 306 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-------------ASAVIRGTVA 352
I+L +P G +V ++G G GKT+ +SA+ G + A + R +A
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIA 84
Query: 353 YVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLD----LLPGGDVTEIGER 407
VP+ IF TV +N+ G+ Y + D ++ DL+ L P + ER
Sbjct: 85 LVPEGRRIFPELTVYENLXXGA------YNRK-DKEGIKRDLEWIFSLFP-----RLKER 132
Query: 408 ----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 463
G +SGG++Q +++ RA+ S + D+P L + +VF+ + G T
Sbjct: 133 LKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 464 VLV-TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+LV N L L ++ G + EG +L +N
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRK 984
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI K + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 985 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN-----SL--GLDA 1037
+ ++P+ +F + ++ D K+ I+R+ SL L
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKD----------KEGIKRDLEWIFSLFPRLKE 131
Query: 1038 QVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEAT---AAVDVRTDALIQKTIREEFKS 1094
++ + G S G++Q K+L DE + A + V + + I +E +
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE-GT 190
Query: 1095 CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1134
+L+ + L + +L++G+++ ELL NE
Sbjct: 191 TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 296 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVS-----DASAVIRG 349
K + L N+N++I G I+G +G GKT+ + + G ++P D G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 350 TVAYVPQ---VSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHD 392
+ P+ + +F N T +NI F S E R E+ + + H
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 393 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV--GRQVF 450
L+ P +SG Q+QRV++ARA+ + + + D+P S LDA + +
Sbjct: 134 LNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 451 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ ++ L V+ + + DR+ ++ +G + + G EDL +N
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 15/217 (6%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM----D 981
L ++ I ++ GI+G +GAGK++ + + + G + D +A G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 982 LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ--V 1039
RKI G++ Q+ L+ NL F + + + ++ + + LD +
Sbjct: 81 DRKI-GMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 1040 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 1097
+ S Q+Q +L+LDE + +D R + ++E T+
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 1098 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
L+++H I DR+ +L G++++ PE+L N
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 37/221 (16%)
Query: 301 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV--------- 351
P L +I+L + G ++ I+G +G GKT+L+ + G P S ++ T+
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 352 -----AYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPG 398
Y+ Q +F + TV NI +G +A E R E +++T
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTG---------- 127
Query: 399 GDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG- 456
++E+ R + +SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ+ + I
Sbjct: 128 --ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
Query: 457 ELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 496
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 29/258 (11%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMDL 982
PVL+ +S ++ P + + I+G +G GK+++L L + + G I + G I +K + +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 983 R-KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 1040
R + LG + Q VLF TV N+ + A ER ++ + G+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIA--YGLGNGKGRTAQERQRIEAMLELT--GISELAG 133
Query: 1041 EAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC----- 1095
S GQ+Q ++++LDE +A+D + +++ IRE+ +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAALRANG 189
Query: 1096 -TMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLS-----------NEGSSFSKMV 1142
+ + ++H R + DRI ++ GR+L+ +P EL EG F +
Sbjct: 190 KSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAAL 249
Query: 1143 QSTGAANAQYLRSLVLGG 1160
+ G A+ + R V G
Sbjct: 250 NADGTADCRLGRLPVQSG 267
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 32/205 (15%)
Query: 285 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 343
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP--YSG 58
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD--- 400
+ I G +R+ I + + P YE + V + + + L G D
Sbjct: 59 NIFINGMEV----------RKIRNYIRYSTNL-PEAYEIGVTVNDIVYLYEELKGLDRDL 107
Query: 401 ------VTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 449
++GE + +S GQ V + A+ S ++ D+P +DA R V
Sbjct: 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHV 166
Query: 450 FDRCIRGELSGKTRVLVTNQLHFLS 474
R I+ GK +LVT++L L+
Sbjct: 167 ISRYIKE--YGKEGILVTHELDMLN 189
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 29/206 (14%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 350
L I+L + G V+I+G +G GK++L+ +LG L ++ + G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 351 -----VAYVPQVSWIF-NATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 402
+ +V Q ++ T +N++ +P + K ++ L L GD
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG----EYLLSELGLGD-- 132
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSDVFIF-DDPLSALDAHVGRQVFDRCIRGELSGK 461
++ + +SGG++QRV++ARA+ +N + +F D+P LD+ ++V D ++ G
Sbjct: 133 KLSRKPYELSGGEQQRVAIARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191
Query: 462 TRVLVTNQLHFLSQVDRIILVHEGMV 487
+ V+VT++ R + + +G V
Sbjct: 192 SIVMVTHERELAELTHRTLEMKDGKV 217
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 974
+L G+S ++ + V I+G +G+GKS++L L + G++ ++G ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMD- 981
+L G++ +P + ++G GAGKS++ L E +ERG IL+DG +I + +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 982 LRKILGIIPQSPVLFSGTVRFNLDPFS-------EHSDADLWEALERAHLKDAIRRNSLG 1034
RK L + Q PV G N + E A+ W +++A + + +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKAL--ELLDWDESY 135
Query: 1035 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE-EFK 1093
L ++E FS G+++ VLDE + +D+ ++ + +
Sbjct: 136 LSRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192
Query: 1094 SCTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1139
+ L+I H R+ I D++ ++ GRV+ PE L E +
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYE 240
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDA 343
E L +++ + G + I+G G GK++LI+ + G ++ A
Sbjct: 18 GEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFG------SAFEPARYEKAI--DVTSLQHDLDL 395
G V + TV +N+L G S Y+K I + ++ +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 396 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L ++ + +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 455 RGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ G T +++ ++L L+ +D + ++ G + EG E+ N
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI +L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 986 LGIIP--QSP-VLFSGTVRFNL-----DPFSEHSDA---DLWEALERAHLKDAIR-RNSL 1033
GI+ Q+P L TV NL +P ++ W E ++ A + L
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1034 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVR-TDALIQKTIREEF 1092
L S GQ + K++V+DE A V + + +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1093 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDA 343
E L +++ + G + I+G G GK++LI+ + G ++ A
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFG------SAFEPARYEKAI--DVTSLQHDLDL 395
G V + TV +N+L G S Y+K I + ++ +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 396 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L ++ + +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 455 RGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ G T +++ ++L L+ +D + ++ G + EG E+ N
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 986 LGIIP--QSPV----------LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR-RNS 1032
GI+ Q+P L G + P + W E ++ A +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK-WIPKEEEMVEKAFKILEF 140
Query: 1033 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVR-TDALIQKTIREE 1091
L L S GQ + K++V+DE A V + + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1092 FKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 315 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGS 373
++ ++G G GKT+LI + G L P + + + V+ PQ ++ F TVR LF
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LF-- 434
Query: 374 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVF 432
F+ R + + Q D++ + +I ++ V ++SGG+ QRV++ A+ +D++
Sbjct: 435 -FKKIRGQ----FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIY 489
Query: 433 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGM 486
+ D+P + LD+ R + + IR + + KT +V + + + ++V EG+
Sbjct: 490 LIDEPSAYLDSE-QRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 410 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 442
+SGG+ QR ++ + +DV++FD+P S LD
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 24/226 (10%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDA 343
E L +++ + G + I+G G GK++LI+ + G ++ A
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 344 SAVIRGTVAYVPQVSWIFNATVRDNILFG------SAFEPARYEKAI--DVTSLQHDLDL 395
G V + TV +N+L G S Y+K I + ++ +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 396 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 454
L ++ + +R +SGGQ + V + RA+ +N + + D P++ + + +F+ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 455 RGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 499
+ G T +++ ++L L+ +D + ++ G + EG E+ N
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 926 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 985
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 986 LGIIP--QSP-VLFSGTVRFNL-----DPFSEHSDA---DLWEALERAHLKDAIR-RNSL 1033
GI+ Q+P L TV NL +P ++ W E ++ A + L
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1034 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVR-TDALIQKTIREEF 1092
L S GQ + K++V+D+ A V + + +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 1093 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1133
K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 249 TQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA-----ISIRNGYFSWDSKAERPTL 303
T+ V + K EE + + P P G+ + + N F + + +P +
Sbjct: 631 TEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTS-KPQI 689
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
+IN + S +A++G G GK++LI+ + GEL P S
Sbjct: 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA-HVGRQV--FDRCIRGELSGKTRVLVT 467
+SGG K ++++ARAV N+D+ + D+P + LD +V V + C G T + ++
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 602
Query: 468 NQLHFLSQVDRIILVHEGMV--KEEGTFEDL 496
+ FL V I+ +EG+ K +G F +
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 881 GNYIELPSEAPLV----------IESNRPPPGW------PSSGSIKFEDVVLRYRPELPP 924
GN+ E + P +E P PG+ +K + +Y P
Sbjct: 628 GNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKP 687
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 956
+ ++F S ++ ++G GAGKS+++N L
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 249 TQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA-----ISIRNGYFSWDSKAERPTL 303
T+ V + K EE + + P P G+ + + N F + + +P +
Sbjct: 625 TEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTS-KPQI 683
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
+IN + S +A++G G GK++LI+ + GEL P S
Sbjct: 684 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 721
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA-HVGRQV--FDRCIRGELSGKTRVLVT 467
+SGG K ++++ARAV N+D+ + D+P + LD +V V + C G T + ++
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 596
Query: 468 NQLHFLSQVDRIILVHEGMV--KEEGTFEDL 496
+ FL V I+ +EG+ K +G F +
Sbjct: 597 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 627
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 881 GNYIELPSEAPLV----------IESNRPPPGW------PSSGSIKFEDVVLRYRPELPP 924
GN+ E + P +E P PG+ +K + +Y P
Sbjct: 622 GNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKP 681
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 956
+ ++F S ++ ++G GAGKS+++N L
Sbjct: 682 QITDINFQCSLSSRIAVIGPNGAGKSTLINVL 713
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 299 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-------ASAVIRGTV 351
++P L I + I G++V G G GKT+L+ + L P+ ++G +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 352 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 411
++P+ + ++ L A + Y ++ + +D L +V ++ ++ +
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVA---SLYGVKVNKNEI---MDALESVEVLDLKKKLGEL 134
Query: 412 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 450
S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 924 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 983
PVL ++ TI + V G G GK+++L T+ ++ +G I+ +G I K ++
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VK 77
Query: 984 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR-NSLGLDAQVSEA 1042
+ +P+ ++ + +++ + + + + + + DA+ L L ++ E
Sbjct: 78 GKIFFLPEEIIV---PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGE- 133
Query: 1043 GENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1102
S G + +I VLD+ A+D + + K+I E K ++II+
Sbjct: 134 ---LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190
Query: 1103 R 1103
R
Sbjct: 191 R 191
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 249 TQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA-----ISIRNGYFSWDSKAERPTL 303
T+ V + K EE + + P P G+ + + N F + + +P +
Sbjct: 631 TEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS-KPQI 689
Query: 304 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 341
+IN + S +A++G G GK++LI+ + GEL P S
Sbjct: 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 411 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA-HVGRQV--FDRCIRGELSGKTRVLVT 467
+SGG K ++++ARAV N+D+ + D+P + LD +V V + C G T + ++
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 602
Query: 468 NQLHFLSQVDRIILVHEGMV--KEEGTFEDL 496
+ FL V I+ +EG+ K +G F +
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 881 GNYIELPSEAPLV----------IESNRPPPGW------PSSGSIKFEDVVLRYRPELPP 924
GN+ E + P +E P PG+ +K ++ +Y P
Sbjct: 628 GNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 956
+ ++F S ++ ++G GAGKS+++N L
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 39/240 (16%)
Query: 297 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---GTVAY 353
K + L I+ I G + G G GKT+L++ + P S + G V Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 354 VPQVSWIFNATVRDNILFGSAFEPARY---EKAIDVT--------SLQHDLD-------- 394
+ TVR +I F S ++ E+ IDV + D+D
Sbjct: 91 SAE-------TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAH 143
Query: 395 -LLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 452
LL + ++ + +S G+KQRV +ARA+ V I D+P + LD + R+
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD-FIARESLLS 202
Query: 453 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQK 505
+ + HF+ ++ +I+L+ +G ++G ED+ N FQK
Sbjct: 203 ILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSRFFQK 262
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 45/246 (18%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 984
+L +S+ I DK + G GAGK+++LN L + ++ A G ++L
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-------------NAYEPATSGTVNL-- 80
Query: 985 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA----------------HLKDAI 1028
G P + TVR ++ F HS + ++ ER + D I
Sbjct: 81 -FGKXPGKVGYSAETVRQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1029 RRNS------LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV---R 1079
R + +G A+ + S G++Q ++L+LDE A +D
Sbjct: 139 RNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
Query: 1080 TDALIQKTIREEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLSNEGSS- 1137
+ I ++ + + + + + H + I + +ILLL G+ ++ E++L++E S
Sbjct: 199 SLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSR 258
Query: 1138 -FSKMV 1142
F K V
Sbjct: 259 FFQKNV 264
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 314 SLVAIVGGTGEGKTSLISAMLGEL-PPVSDASAVI---------RGTVAY---------- 353
+++ ++G G GKT+++ + GE+ P D ++ + RG Y
Sbjct: 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNE 85
Query: 354 ---VPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 410
V ++ ++ A+ L G+ E ID + ++ L ++T + + N
Sbjct: 86 LKIVHKIQYVEYAS---KFLKGTVNEIL---TKIDERGKKDEVKELL--NMTNLWNKDAN 137
Query: 411 I-SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 469
I SGG QR+ +A ++ +DV+IFD P S LD R + IR L K ++V +
Sbjct: 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR-ERMNMAKAIRELLKNKYVIVVDHD 196
Query: 470 LHFLSQVDRIILVHEG 485
L L + +I + G
Sbjct: 197 LIVLDYLTDLIHIIYG 212
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 313 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-FNATVRDNILF 371
G ++ I+G G GKT+ ++GE+ + + ++Y PQ + ++ TV+ +
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLEN 353
Query: 372 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSD 430
S + A+ +S + ++ ++ + E VN +SGG+ Q++ +A + +D
Sbjct: 354 AS-------KDALSTSSWFFE-EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEAD 405
Query: 431 VFIFDDPLSALDAH 444
+++ D P S LD
Sbjct: 406 LYVLDQPSSYLDVE 419
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 332 AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 391
+LG +P A I V P +W +A + ++ G + +K +DV S+
Sbjct: 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHF 329
Query: 392 DLDLLPGGDVTEIGERGVNISGGQ 415
D +P + + I E +SGG+
Sbjct: 330 DSAWVPYTNFSPIYEGKCGMSGGR 353
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334
A L N+++ IP+G+ VA+ G +G GK++L++ +L
Sbjct: 635 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSD---VFIFDDPLSALDAHVGRQVFDRCIRGELS 459
++G+ +SGG+ QRV +A ++ S+ ++I D+P + L ++ D R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 460 GKTRVLVTNQLHFLSQVDRII 480
G T +++ + L + D II
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSL 329
L NI+++IP G LV + G +G GK+SL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334
A L N+++ IP+G+ VA+ G +G GK++L++ +L
Sbjct: 635 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSD---VFIFDDPLSALDAHVGRQVFDRCIRGELS 459
++G+ +SGG+ QRV +A ++ S+ ++I D+P + L ++ D R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 460 GKTRVLVTNQLHFLSQVDRII 480
G T +++ + L + D II
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSL 329
L NI+++IP G LV + G +G GK+SL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 385 DVTSLQHDLDLLP--GGDVTEIGERGVNISGGQKQRVSMA---RAVYSNSDVFIFDDPLS 439
++ S++ L +L G ++G+ +SGG+ QR+ +A R + ++I D+P
Sbjct: 778 NIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV 837
Query: 440 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV------HEGMVKEEGTF 493
L R++ + R G T +++ + L + D II + G + GT
Sbjct: 838 GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTP 897
Query: 494 EDLSNN 499
E+++ N
Sbjct: 898 EEIAKN 903
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334
L NI+++IP+G V + G +G GK+SL+ L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL 631
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 298 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 334
A L N+++ IP+G+ VA+ G +G GK++L++ +L
Sbjct: 333 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 403 EIGERGVNISGGQKQRVSMARAVYSNSD---VFIFDDPLSALDAHVGRQVFDRCIRGELS 459
++G+ +SGG+ QRV +A ++ S+ ++I D+P + L ++ D R +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 460 GKTRVLVTNQLHFLSQVDRII 480
G T +++ + L + D II
Sbjct: 596 GDTVLVIEHNLDVIKTADYII 616
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 303 LLNINLDIPVGSLVAIVGGTGEGKTSL 329
L NI+++IP G LV + G +G GK+SL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 285 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDA 343
+SI++ + S + KA L ++LD+ G + AI+G G GK++L + + G E V+
Sbjct: 2 LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 344 SAVIRGT--VAYVPQ---VSWIFNA--------TVRDNILFGSAFEPARYEKAIDVTSLQ 390
+ +G +A P+ IF A V + +A R + Q
Sbjct: 59 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG------Q 112
Query: 391 HDLDLLPGGDVTE-----------IGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDP 437
LD D+ E + R VN+ SGG+K+R + + ++ I D+
Sbjct: 113 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 438 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVKEEGTF 493
S LD + V D ++ ++VT+ L + D + ++++G + + G F
Sbjct: 173 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 14/212 (6%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDL 982
+L GLS + P + I+G G+GKS++ TL E+ G + G D+ D
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED- 74
Query: 983 RKILGIIP--QSPVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRN----SLG 1034
R GI Q PV G F + E L+R +D + +
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 134
Query: 1035 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREE 1091
D FS G+++ ++ +LDE+ + +D+ ++ ++R+
Sbjct: 135 EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 194
Query: 1092 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
+S ++ R+ I D + +L GR+++
Sbjct: 195 KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 38/242 (15%)
Query: 281 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP 339
G +SI++ + S + KA L ++LD+ G + AI+G G GK++L + + G E
Sbjct: 17 GSHMLSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE 73
Query: 340 VSDASAVIRGT--VAYVPQ---VSWIFNA--------TVRDNILFGSAFEPARYEKAIDV 386
V+ + +G +A P+ IF A V + +A R +
Sbjct: 74 VTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG--- 130
Query: 387 TSLQHDLDLLPGGDVTE-----------IGERGVNI--SGGQKQRVSMARAVYSNSDVFI 433
Q LD D+ E + R VN+ SGG+K+R + + ++ I
Sbjct: 131 ---QETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 187
Query: 434 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVKEEG 491
D+ S LD + V D ++ ++VT+ L + D + ++++G + + G
Sbjct: 188 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
Query: 492 TF 493
F
Sbjct: 248 DF 249
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 14/212 (6%)
Query: 925 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDL 982
+L GLS + P + I+G G+GKS++ TL E+ G + G D+ D
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED- 93
Query: 983 RKILGIIP--QSPVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRN----SLG 1034
R GI Q PV G F + E L+R +D + +
Sbjct: 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153
Query: 1035 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREE 1091
D FS G+++ ++ +LDE+ + +D+ ++ ++R+
Sbjct: 154 EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 213
Query: 1092 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1123
+S ++ R+ I D + +L GR+++
Sbjct: 214 KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 404 IGERGVNISGGQKQRVSMA---RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 460
+G+ +SGG+ QR+ +A R V++ D+P + L ++ + ++ +G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 461 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 504
T + V +++ ++ D ++ + G ++ G E+ Q
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 410 NISGGQKQRVSMARAVYSN--SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 467
+SGG+ QR+ +A + S +++ D+P L R++ + R G T ++V
Sbjct: 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580
Query: 468 NQLHFLSQVDRIILV------HEGMVKEEGTFEDLSNN 499
+ + D I+ + H G + G +++L N
Sbjct: 581 HDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 404 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGEL-S 459
+G+ +SGG+ QRV +A + S V+I D+P + L R++ + I G +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDK 915
Query: 460 GKTRVLVTNQLHFLSQVDRII 480
G T +++ + L + D II
Sbjct: 916 GNTVIVIEHNLDVIKTSDWII 936
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 915 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 957
V R + PP L G +V VGR+ GKSS+LN LF
Sbjct: 11 VARTPGDYPPPLKG---------EVAFVGRSNVGKSSLLNALF 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,665,444
Number of Sequences: 62578
Number of extensions: 1312178
Number of successful extensions: 4193
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3718
Number of HSP's gapped (non-prelim): 274
length of query: 1293
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1183
effective length of database: 8,089,757
effective search space: 9570182531
effective search space used: 9570182531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)