Query 000777
Match_columns 1288
No_of_seqs 371 out of 4287
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 15:54:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000777.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_549-552//hhsearch_pdb/000777hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1741.5 135.3 1237 39-1285 55-1319(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1533.8 117.8 1227 40-1286 29-1274(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 848.0 72.9 578 702-1283 57-654 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 776.7 57.9 575 706-1284 34-627 (1284)
5 3qf4_A ABC transporter, ATP-bi 1.0 1 1 739.4 72.2 569 708-1284 12-580 (587)
6 3qf4_B Uncharacterized ABC tra 1.0 1 1 739.2 67.2 571 705-1285 23-593 (598)
7 4a82_A Cystic fibrosis transme 1.0 1 1 733.4 65.0 570 708-1283 3-577 (578)
8 2yl4_A ATP-binding cassette SU 1.0 1 1 721.3 72.5 577 707-1286 7-587 (595)
9 3b60_A Lipid A export ATP-bind 1.0 1 1 719.1 71.5 567 707-1283 13-580 (582)
10 3b5x_A Lipid A export ATP-bind 1.0 1 1 718.9 75.9 567 707-1283 13-580 (582)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1741.47 Aligned_cols=1237 Identities=37% Similarity=0.644 Sum_probs=1056.3
Q ss_pred CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------------CCCHHHHH
Q ss_conf 3457710899878323145889999999999989789999999999996312588-----------------87121667
Q 000777 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-----------------NNSETVDK 101 (1288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 101 (1288)
...++++++++|+|..+.++++++++.+++++.+++.|++++++|.+++.+.... ........
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 25687799997315676789999999999999999999999999999999970100014543000344310016899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999981994446126880048999982399999999898
Q 000777 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181 (1288)
Q Consensus 102 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~G~ilsr~~~D~~~i~~~~~~~ 181 (1288)
+..+++.+++++++.+++.+++.+++.+.++|+..++|.++|+|++++|++|||+. ++|++++|+++|++.+++.+...
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~ 213 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDK 213 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999978898998799-84899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf 99999999999999999998969999999999999999999999999999999999999999999999907999998240
Q 000777 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTG 261 (1288)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 261 (1288)
+..++..+..+++.++++++++|.+++++++.+|+++++...+.++..+..++.++..++..+.+.|.+.|+++||+|++
T Consensus 214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 293 (1321)
T 4f4c_A 214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999989999999999999999999999999999999999999999999999983999998214
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999999999999999989986058677899999999999999999989
Q 000777 262 EKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS 341 (1288)
Q Consensus 262 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 341 (1288)
|+.+.++|.+..++..+...+.....++..+...++..+.+++++|+|++++.++.++.|.+++++.++.....|+..+.
T Consensus 294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~ 373 (1321)
T 4f4c_A 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG 373 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999999999999999999999999999999999999999999999999599869999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCC
Q ss_conf 99999999999999999985439877657878865689866399996999989988876543202888289899998699
Q 000777 342 PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421 (1288)
Q Consensus 342 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 421 (1288)
+.+..+..+.++++|++++++.+|+.+........+.+..+.|+|+||+|+||++++.++|+|+||+|++|++++|||||
T Consensus 374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECC
T ss_conf 99999999999999999997178534566655656778887679998554079999874333318862288278998058
Q ss_pred CCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCH
Q ss_conf 99289999999728889983899999607988988874443888478878943099997139999999999999998078
Q 000777 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501 (1288)
Q Consensus 422 GsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~ 501 (1288)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+|+||+|++||||||.+|.++++++++++||+.+++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 98577888875456516448615799650112599985046665875332078616788641552209999999987565
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99998298984220028999999579999999998606997899827788989898999999999861896499980592
Q 000777 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1288)
Q Consensus 502 ~~~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 581 (1288)
+++|+.+|+||+|.+||+|.+||||||||||||||+|++|+|+|||||||+||+++|+.++++++++.+++|+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred HHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 46887088888607558988777778799999998725999899845544688789999999999984798899973638
Q ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 24420287999959889684394577309984689999998621000000013331001254220013444322345678
Q 000777 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661 (1288)
Q Consensus 582 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1288)
+++..||+|++|++|+|+|+|+|+||++. +|.|+++++.|......+...++....+... .+.........+.....
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 690 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSV--ARQTSEHEGLSRQASEM 690 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHHHHCCEEEEEECCEEECCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
T ss_conf 78986898999639965136899999985-3279999996221222233233443322321--11222223422222221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-------CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8778898765444469999886643479999-999-------99866677503575414207906799999999999999
Q 000777 662 SSIGNSSRHSISVSFGLPSGQFADTALGEPA-GPS-------QPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGV 733 (1288)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1288)
............... . ..+........ +.. ...+.......++++.++.++.++.++++++++.+.+.
T Consensus 691 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 766 (1321)
T 4f4c_A 691 DDIMNRVRSSTIGSI--T--NGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGF 766 (1321)
T ss_dssp -----------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHCCCCCCC--C--CCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 102211101321245--6--774025777531540389999999970786310999999987789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999855998430021499999999999999999999999999999999999999999999808954435
Q 000777 734 ILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFD 813 (1288)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~ 813 (1288)
..+..+++++.+++.+...+........+|.+++++++++..++.++..++..+.+.++..++|.+++++++++|++||+
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd 846 (1321)
T 4f4c_A 767 IYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFD 846 (1321)
T ss_dssp HHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTT
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 99999999999998751793455667899999999999999999999999999999999999999998887349933321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68888358999998559999999999999999999999999999998639999999999999999999999999899999
Q 000777 814 EPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSAD 893 (1288)
Q Consensus 814 ~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~ 893 (1288)
..++++|++++|+++|++.++..++..+..++..++.+++.++++++++|++++++++++|++++..+...+.......+
T Consensus 847 ~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~ 926 (1321)
T 4f4c_A 847 SPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVK 926 (1321)
T ss_dssp SGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTT
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67888488885025059999999999999999986537777022137868999999998889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999981179999842199999999999998999989999999768899999999999999999999986
Q 000777 894 AKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE 973 (1288)
Q Consensus 894 ~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 973 (1288)
..+...+....+.|++.|+++||+|++++++.+++.+..+...+...+.........+....+..+..+.++++|..++.
T Consensus 927 ~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 1006 (1321)
T 4f4c_A 927 SASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALII 1006 (1321)
T ss_dssp TSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998889889999996279888614148899999999999999999999999999999999999999999987578875
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 39747999--9999999999999999999999989999999999999842367889999888655688763899978888
Q 000777 974 DGKATFSD--VFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051 (1288)
Q Consensus 974 ~g~~t~g~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~ 1051 (1288)
.+..+.+. ++.++.++.....++..+..++..+.....+.+|+.++++.+++.+....+. ..+...|.|+|+||+|+
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~-~~~~~~g~I~f~nVsf~ 1085 (1321)
T 4f4c_A 1007 TDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFA 1085 (1321)
T ss_dssp SSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCS-BCCCCCCCEEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEEEEEEEE
T ss_conf 37654214789999999987788999999999999999999998999860766577766778-78888881899987985
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCC
Q ss_conf 79998864310103897389699998599998888999984237999765998995056779788741138883578774
Q 000777 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1288)
Q Consensus 1052 Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf 1131 (1288)
||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+++++++||+++++|||||+||
T Consensus 1086 Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A 1086 YPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp CTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEE
T ss_conf 79999882124516998898999998999981999999995686389978999999865499999985459987899732
Q ss_pred HHHHHHHHHCCC-CCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 121999971599-9999999999999980002889752114302004999989936999999999970799788973667
Q 000777 1132 NDTIRANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEAT 1210 (1288)
Q Consensus 1132 ~gTi~eNl~~~~-~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpT 1210 (1288)
+|||||||++|. +++++|+++++||+.++++++|.+||+||||.|||+|.+||||||||||||||++|+|+||||||||
T Consensus 1166 ~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaT 1245 (1321)
T 4f4c_A 1166 DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 1245 (1321)
T ss_dssp SEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 72399997454999999999999999982984999717678999823889156999999999999997179989996811
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 799979899999999987189639998159046640388999959889781593566219993789999985102
Q 000777 1211 SALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSA 1285 (1288)
Q Consensus 1211 S~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~~~ 1285 (1288)
|+||++||+.|+++|++.+++||+|+||||++++++||+|+|||+|+|+|+|+|+||+++ +|.|++||+.|...
T Consensus 1246 SaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1246 SALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTE 1319 (1321)
T ss_dssp CSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-------------
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHHC
T ss_conf 157899999999999997399989996068999996999999989899998888999849-80999999999850
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1533.75 Aligned_cols=1227 Identities=42% Similarity=0.723 Sum_probs=1043.8
Q ss_pred CCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCC---------HHHHHHH
Q ss_conf 457710899878323145889999999999989789999999999996312588-------871---------2166799
Q 000777 40 KTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-------NNS---------ETVDKVS 103 (1288)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~ 103 (1288)
.+....++++++|..+..+..++++.++.++.+++.|+++++++.+++.+.... ... .....+.
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1284)
T 3g5u_A 29 KKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108 (1284)
T ss_dssp ----CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66665699999872657999999999999999999999999999999998613444332222221111100244688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999998199444612688004899998239999999989899
Q 000777 104 KVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVG 183 (1288)
Q Consensus 104 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~G~ilsr~~~D~~~i~~~~~~~~~ 183 (1288)
.+.+++++++++..++.+++.+++.+.+.++..++|.++|++++++|+.||++. ++|++++|+++|++.+++.+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999986998997568-8778999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999999999999999896999999999999999999999999999999999999999999999990799999824089
Q 000777 184 KFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK 263 (1288)
Q Consensus 184 ~~~~~~~~~~~~~i~~~~~~~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 263 (1288)
.++..++.+++.++++++++|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|++.|+++||+|++|+
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHH
T ss_conf 99999999999999999998999999999999999999999999999999999999999999999997879999846539
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999998998605867789999999999999999998999
Q 000777 264 QAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343 (1288)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 343 (1288)
.+.++|.+.+++..+...+.....++..++..++..+.+++.+|+|++++..+.++.|.+++++.+......++..+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999929988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEECCCCC
Q ss_conf 99999999999999998543987765787886568986639999699998998887654320288828989999869999
Q 000777 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1288)
Q Consensus 344 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 423 (1288)
+..+..+..++.|++++++.+|+.+........++...+.|+++||+|+|+++++.++|+|+||++++||+++|||||||
T Consensus 348 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCC
T ss_conf 99999999999999999728986776665677777777718999989976999987101254589759988999899999
Q ss_pred CHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 28999999972888998389999960798898887444388847887894309999713999999999999999807899
Q 000777 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1288)
Q Consensus 424 GKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1288)
|||||+++|+|+++|++|+|.+||.|+++++.+++|++++||+|+|++|++||+|||.++.++.++++++++++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 79999999807889997389999998775799999865489868875377669999745798999999999999829699
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 99829898422002899999957999999999860699789982778898989899999999986189649998059224
Q 000777 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1288)
Q Consensus 504 ~i~~~~~g~~t~v~~~g~~LSgGq~qri~lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 583 (1288)
++..+|+|++|.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+++.++.+.+++|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 99746563345014787865999999999999995299989997987777999999999999997399989999407789
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 42028799995988968439457730998468999999862100000001333100125422001344432234567887
Q 000777 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSS 663 (1288)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1288)
+..||+|++|++|++++.|+|+++++. ++.|..++..+....+.+...+.... .......... ..... ..
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~---~~ 657 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNLDMS-----SKDSG---SS 657 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC----------------------------------------
T ss_pred HHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCC-----CCCCC---CC
T ss_conf 974998999989999997889999867-87799999974300221113333332-2222344333-----33333---20
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78898765444469999886643479999999998666775035754142079067999999999999999999999999
Q 000777 664 IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLIS 743 (1288)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1288)
. .. ..........+ ..... . .......++..+...++++..+.++.++.+..+++++++.+.+.+..+++++
T Consensus 658 ~-~~-~~~~~~~~~~~----~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1284)
T 3g5u_A 658 L-IR-RRSTRKSICGP----HDQDR-K-LSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFS 729 (1284)
T ss_dssp ----------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CC-CCCCCCCCCCC----CCCCC-C-CCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0-03-45433344564----22332-1-1024555313662589999998451579999999999999999999999999
Q ss_pred HHHHHHCCCCC--CCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 99998559984--3002149999999999999999999999999999999999999999999980895443568888358
Q 000777 744 SVIETFFKPPH--ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGA 821 (1288)
Q Consensus 744 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~ 821 (1288)
.+++.+..... .......+|.+++++++++..++.++..++..+.+.++..++|.+++++++++|++||+++++++|+
T Consensus 730 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~ 809 (1284)
T 3g5u_A 730 KVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA 809 (1284)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHH
T ss_conf 99999855685033677999999999999999999999999999999999999999999999983998887578998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999855999999999999999999999999999999863999999999999999999999999989999999999999
Q 000777 822 IGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEA 901 (1288)
Q Consensus 822 i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1288)
+++|+++|++.++..+...+..++..+..++..+++++.++|.+++++++.+|+++++.+...++.+....+........
T Consensus 810 l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1284)
T 3g5u_A 810 LTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999996999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999998117999984219999999999999899998999999976889999999999999999999998639747999
Q 000777 902 SQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSD 981 (1288)
Q Consensus 902 ~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~ 981 (1288)
...+.|++.|+++||+|+.++.+.++|.+..+...+...+.....+...++...+..+..++++|+|.+++..+.++++.
T Consensus 890 ~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~ 969 (1284)
T 3g5u_A 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969 (1284)
T ss_dssp HHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTT
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999889999984659999999999999999999999999999999999999999999999999999909806999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 99999999999999999999999899999999999998423678899998886556887638999788887999886431
Q 000777 982 VFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVF 1061 (1288)
Q Consensus 982 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL 1061 (1288)
++.++.++.....++..+..+...+.....+..|+.++++.+++..........++...+.|+|+||+|+|++.++.++|
T Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l 1049 (1284)
T 3g5u_A 970 VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEE
T ss_conf 99999999999999999999999999999999999999838876666555665456777857999989977999987002
Q ss_pred CCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHC
Q ss_conf 01038973896999985999988889999842379997659989950567797887411388835787741219999715
Q 000777 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1288)
Q Consensus 1062 ~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~ 1141 (1288)
+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++++|||||+.+|++||+||+.+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 1129 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTC
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHC
T ss_conf 03059976998899988999978999999946867899779899998000789999702689877874066669999746
Q ss_pred CCC-CCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 999-9999999999999800028897521143020049999899369999999999707997889736677999798999
Q 000777 1142 GKG-GDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERV 1220 (1288)
Q Consensus 1142 ~~~-~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~ 1220 (1288)
+.+ ...++++++++++.+++++++.++|+||||.+||+|.+||||||||+|||||++++|+|||||||||+||++++..
T Consensus 1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~ 1209 (1284)
T 3g5u_A 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209 (1284)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 68778999999999999839599997270424561178889338999999999999974999999868755579999999
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 999999871896399981590466403889999598897815935662199937899999851026
Q 000777 1221 VQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSSAS 1286 (1288)
Q Consensus 1221 I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~~~~ 1286 (1288)
|++.|++..+++|+|+||||++++..||||+||++|+++|.|+|+||+++ +|.|++||+.|....
T Consensus 1210 i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1210 VQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp HHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC---
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHHCC
T ss_conf 99999986799989999558799980998999989989997789999847-777999999976132
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=847.96 Aligned_cols=578 Identities=40% Similarity=0.657 Sum_probs=523.1
Q ss_pred CCCHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CC-C-----CHHCHH
Q ss_conf 775035754142079-067999999999999999999999999999985599-------------84-3-----002149
Q 000777 702 APEVPTRRLAYLNKP-EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKP-------------PH-E-----LKKDSR 761 (1288)
Q Consensus 702 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~-----~~~~~~ 761 (1288)
.+...+..++.|..+ .+..++++.+++++.++..|+..++++.+++.+... .. . ......
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 68779999731567678999999999999999999999999999999997010001454300034431001689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999998089544356888835899999855999999999999
Q 000777 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1288)
Q Consensus 762 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l 841 (1288)
.+.+.+++++++..++.++..+++.+++.+...++|.+++++++++|++||++ +++|++++|+++|++.++..+...+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997889899879--9848999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 99999999999999999986399999999999999999999999998999999999999999999998117999984219
Q 000777 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1288)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~ 921 (1288)
..++..++.+++.++++++++|.+++++++.+|+++++.....+..++...+.+....+..+.+.|.+.|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999899999999999999999999999999999999999999999999999839999982142
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999989999899999997688999999999999999999999863974799999999999999999999999
Q 000777 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1288)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~ 1001 (1288)
+.+.++|.+..++..+...+.....+...+...++..+.+++++|+|.+++..|.+++|.++.++.++.....|+..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999995998699999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCC
Q ss_conf 99989999999999999842367889999888655688763899978888799988643101038973896999985999
Q 000777 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1288)
Q Consensus 1002 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SG 1081 (1288)
.+..+.++..+.+|+.++++.+++..........+....|.|+|+||+|+||+.+++++|+|+||+|+|||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCC
T ss_conf 99999999999999999971785345666556567788876799985540799998743333188622882789980589
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCH
Q ss_conf 98888999984237999765998995056779788741138883578774121999971599999999999999998000
Q 000777 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1288)
Q Consensus 1082 SGKSTL~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l 1161 (1288)
||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||++|++||+|||.+|. ++++++++++||+.+++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~-~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK-EGITREEMVAACKMANA 533 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHC-CCCHHHHHHHHHHHCCC
T ss_conf 85778888754565164486157996501125999850466658753320786167886415-52209999999987565
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 28897521143020049999899369999999999707997889736677999798999999999871896399981590
Q 000777 1162 HKFICSLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRL 1241 (1288)
Q Consensus 1162 ~~~i~~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl 1241 (1288)
+++|..||+|+||.|||+|.+||||||||||||||++++|+|+|||||||+||++||+.++++|.+..+++|+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred HHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 46887088888607558988777778799999998725999899845544688789999999999984798899973638
Q ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 466403889999598897815935662199937899999851
Q 000777 1242 STIKNADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1242 ~~i~~aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~ 1283 (1288)
++++.||+|+||++|+|+|.|+|+||+++ +|.|++|++.|.
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHCCEEEEEECCEEECCCCHHHHHHH-HHHHHHHHHHHH
T ss_conf 78986898999639965136899999985-327999999622
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=776.71 Aligned_cols=575 Identities=40% Similarity=0.696 Sum_probs=513.2
Q ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------C----------CHHCHHHHHHH
Q ss_conf 3575414207-906799999999999999999999999999998559984--------3----------00214999999
Q 000777 706 PTRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH--------E----------LKKDSRFWALI 766 (1288)
Q Consensus 706 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----------~~~~~~~~~~~ 766 (1288)
.+.+++.+.. ..+..++.+++++++.+...++.+++++.+++.+..... . .......+.++
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 69999987265799999999999999999999999999999999861344433222222111110024468899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999808954435688883589999985599999999999999999
Q 000777 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQ 846 (1288)
Q Consensus 767 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~ 846 (1288)
+++++++..++.+++.+++.+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.++..+...+..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~--~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~ 191 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQ 191 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999998699899756--887789999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 99999999999998639999999999999999999999999899999999999999999999811799998421999999
Q 000777 847 NISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQ 926 (1288)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~ 926 (1288)
.++.+++.++++++++|++++++++++|+++++..++.+..++...+.+....+....+.|++.|+++||+|++++++.+
T Consensus 192 ~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~ 271 (1284)
T 3g5u_A 192 AMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHH
T ss_conf 99999999999999989999999999999999999999999999999999999999999999978799998465399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999989999999768899999999999999999999986397479999999999999999999999999989
Q 000777 927 LYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDS 1006 (1288)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1288)
+|.+..++..+...+.....+...+...++.....++++|+|++++..|.+++|.++.++.++.....++..+...+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1284)
T 3g5u_A 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAF 351 (1284)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999299889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHH
Q ss_conf 99999999999984236788999988865568876389997888879998864310103897389699998599998888
Q 000777 1007 NKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086 (1288)
Q Consensus 1007 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKST 1086 (1288)
..+..+..|+.++++.+++..+.......++...|.|+|+||+|+|++.++.++|+|+||+|+|||++||||||||||||
T Consensus 352 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHH
T ss_conf 99999999999997289867766656777777777189999899769999871012545897599889998999997999
Q ss_pred HHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 99998423799976599899505677978874113888357877412199997159999999999999999800028897
Q 000777 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1288)
Q Consensus 1087 L~~lL~gl~~p~~G~I~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~ 1166 (1288)
|+++|+|+|+|++|+|.+||+|+++++++++|++++||||||.+|++||+|||.++. ++.++++++++++.+++++++.
T Consensus 432 l~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~-~~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-EDVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC-SSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHH
T ss_conf 999980788999738999999877579999986548986887537766999974579-8999999999999829699997
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
Q ss_conf 52114302004999989936999999999970799788973667799979899999999987189639998159046640
Q 000777 1167 SLQQGYDTMVGERGLQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKN 1246 (1288)
Q Consensus 1167 ~lp~Gldt~v~e~G~~LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~ 1246 (1288)
.+|+|+||.+|++|.+||||||||+|||||++++|+|||||||||+||+++|..+++.++...+++|+|+||||+++++.
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC
T ss_conf 46563345014787865999999999999995299989997987777999999999999997399989999407789974
Q ss_pred CCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 38899995988978159356621999378999998510
Q 000777 1247 ADMIAVVKNGVIVEKGKHENLINIPDGFYASLIALHSS 1284 (1288)
Q Consensus 1247 aDrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~~~ 1284 (1288)
||+|+||++|+++|.|+|+||+++ ++.|++++..+..
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTA 627 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC-
T ss_pred CCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHH
T ss_conf 998999989999997889999867-8779999997430
No 5
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=739.45 Aligned_cols=569 Identities=25% Similarity=0.362 Sum_probs=505.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75414207906799999999999999999999999999998559984300214999999999999999999999999999
Q 000777 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1288)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 787 (1288)
+.+..+.+++++.+....++.++..++....++++..+++...... .......+..+++++.++..++.++..++..+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG--DFSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999987369--87999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999808954435688883589999985599999999999999999999999999999986399999
Q 000777 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1288)
Q Consensus 788 ~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 867 (1288)
.+.++..++|.+++++++++|+.||++ +++|++++|+++|++.++..+...+..++...+.+++.++++++++|.+++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999997889799765--888999999999999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999899999999999999999999811799998421999999999999989999899999997
Q 000777 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1288)
Q Consensus 868 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1288)
++++.+|++.++..++.+..++..++.++...+..+.+.|.+.|+++||+|++++.+.++|.+..++..+...+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999855999998621499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 68899999999999999999999986397479999999999999999999999999989999999999999842367889
Q 000777 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1288)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1027 (1288)
...+...++.....++++++|++++..|.+++|.++++..+...+..|+..+...+..+.++..+.+|+.++++.+++..
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999998499389999999999999999999999999999999999999999976897657
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 99988865568876389997888879998864310103897389699998599998888999984237999765998995
Q 000777 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1288)
Q Consensus 1028 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~ 1107 (1288)
+.... ...+...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+
T Consensus 328 ~~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 328 EADNA-LALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp CCTTC-BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred CCCCC-CCCCCCCCCEEEEEEEEECCCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
T ss_conf 88776-5668888807997889984899-976421117998699889998999997999999992786699867989999
Q ss_pred ECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 05677978874113888357877412199997159999999999999999800028897521143020049999899369
Q 000777 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSGGQ 1187 (1288)
Q Consensus 1108 di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSgGQ 1187 (1288)
|+++++.+++|++++||||++.+|++|++||+.++. +..++++++++++.+++++++..+|+|+||.++++|.+|||||
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred ECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHH
T ss_conf 834078999984138977898676755999985248-8999999999999968499997565312127518989929999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999999970799788973667799979899999999987189639998159046640388999959889781593566
Q 000777 1188 KQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHENL 1267 (1288)
Q Consensus 1188 rQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~eL 1267 (1288)
|||++||||++++|+|+|||||||+||++++..+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999999997299999997975447999999999999986799989998227688981998999989989997889999
Q ss_pred HCCCCCHHHHHHHHHHC
Q ss_conf 21999378999998510
Q 000777 1268 INIPDGFYASLIALHSS 1284 (1288)
Q Consensus 1268 l~~~~g~y~~l~~~~~~ 1284 (1288)
+++ ++.|+++|..|..
T Consensus 565 ~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 565 LEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHH-CHHHHHHHHHHC-
T ss_pred HHC-CCHHHHHHHHHHC
T ss_conf 867-8399999999846
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=739.22 Aligned_cols=571 Identities=30% Similarity=0.462 Sum_probs=514.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03575414207906799999999999999999999999999998559984300214999999999999999999999999
Q 000777 705 VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYF 784 (1288)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 784 (1288)
..++++..+.++.++.+...+++.++.+++....+++++.+++.+....+ ......+..+++++.++..++.++..++
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999973688--8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999808954435688883589999985599999999999999999999999999999986399
Q 000777 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1288)
Q Consensus 785 ~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 864 (1288)
..+.+.++..++|.+++++++++|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999997799999768--888999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999899999999999999999999811799998421999999999999989999899999
Q 000777 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1288)
Q Consensus 865 l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1288)
+++++++.+|+.+++...+.+..++...+.++...+..+.+.|.+.|+++||+|++++.+.++|.+..++..+...+..+
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999737999997487099999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99768899999999999999999999986397479999999999999999999999999989999999999999842367
Q 000777 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1288)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 1024 (1288)
..........++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+..+..+.+|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999998599789999999999999999999999999999999999999999976887
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 88999988865568876389997888879998864310103897389699998599998888999984237999765998
Q 000777 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1288)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1104 (1288)
+...+. ....+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+
T Consensus 339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCC--CCCCCCCCCEEEEEEEEEECCC--CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 777777--7777777771899998997799--986012227998699889998999996999999994585799808999
Q ss_pred CCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99505677978874113888357877412199997159999999999999999800028897521143020049999899
Q 000777 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLS 1184 (1288)
Q Consensus 1105 dG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LS 1184 (1288)
||+|+++++.+++|++++||||++.+|++|++||+.++. +..++++++++++.+++++++..+|+|+||.++++|.+||
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 493 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLS 493 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSC
T ss_pred CCEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCC
T ss_conf 999830188999984108990798232463999974479-9999999999999969788897464532364227889879
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 36999999999970799788973667799979899999999987189639998159046640388999959889781593
Q 000777 1185 GGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKH 1264 (1288)
Q Consensus 1185 gGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~ 1264 (1288)
||||||++||||++++|+|||||||||+||++++..+++.+++..+++|+|+||||+++++.||+|++|++|+++|.|+|
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKH 573 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCH
T ss_conf 99999999999996499999998976679999999999999998089989999427789971998999989999987789
Q ss_pred HHHHCCCCCHHHHHHHHHHCC
Q ss_conf 566219993789999985102
Q 000777 1265 ENLINIPDGFYASLIALHSSA 1285 (1288)
Q Consensus 1265 ~eLl~~~~g~y~~l~~~~~~~ 1285 (1288)
+||+++ ++.|++++..|...
T Consensus 574 ~~l~~~-~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 574 DELIQK-RGFYYELFTSQYGL 593 (598)
T ss_dssp HHHHHT-TCHHHHHHHHHHGG
T ss_pred HHHHHC-CCHHHHHHHHHHHH
T ss_conf 999867-87799999997646
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=733.40 Aligned_cols=570 Identities=31% Similarity=0.456 Sum_probs=499.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHCH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7541420790679999999999999999999999999999855998430-0214----9999999999999999999999
Q 000777 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHEL-KKDS----RFWALIYLALGAGSFLLSPAQS 782 (1288)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~i~~~~~~ 782 (1288)
+++..+.+++++.+...+++.++...+....++++..+++.+....... .... ..+..+++++.++..++.++..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988999999999999999999999999999999999981687114677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998089544356888835899999855999999999999999999999999999999863
Q 000777 783 YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTAS 862 (1288)
Q Consensus 783 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 862 (1288)
++..+.+.++..++|.+++++++++|++||++ +++|++++|+++|++.++.++...+..++...+.+++.+++++.++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998789999768--9869999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998999999999999999999998117999984219999999999999899998999
Q 000777 863 WQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942 (1288)
Q Consensus 863 ~~l~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1288)
|++++++++.+|+++++...+.+..++..++.+....+..+.+.|.+.|+++||+|++++.+.++|.+..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999998249999981664999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99997688999999999999999999999863974799999999999999999999999999899999999999998423
Q 000777 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR 1022 (1288)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~ 1022 (1288)
.+..........++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999985995899999999999999999999999999999999999999999768
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 67889999888655688763899978888799988643101038973896999985999988889999842379997659
Q 000777 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1288)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I 1102 (1288)
+++..+.... .+.+...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|
T Consensus 321 ~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 398 (578)
T 4a82_A 321 DYDIKNGVGA-QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398 (578)
T ss_dssp CCSSCCCTTC-CCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred CCCCCCCCCC-CCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 9766678776-6667778807999999975899-9741343379987999999989999859999999846788999679
Q ss_pred EECCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98995056779788741138883578774121999971599999999999999998000288975211430200499998
Q 000777 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ 1182 (1288)
Q Consensus 1103 ~idG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~ 1182 (1288)
.+||+|+++++.+++|++++||||++.+|++|++||+.++. +..++++++++++.+++++++..+|+|+||.++++|.+
T Consensus 399 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 399 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCC
T ss_conf 99999844278999960068992898347645999985279-99889999999988095999975733010253068896
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEEC
Q ss_conf 99369999999999707997889736677999798999999999871896399981590466403889999598897815
Q 000777 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1183 LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~G 1262 (1288)
||||||||++||||++++|+++|||||||+||++++..+++.+++..+++|+|+||||+++++.||+|++|++|++++.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEEC
T ss_conf 79999999999999974999999978654579999999999999980899799983178999719989999899899988
Q ss_pred CHHHHHCCCCCHHHHHHHHHH
Q ss_conf 935662199937899999851
Q 000777 1263 KHENLINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1263 t~~eLl~~~~g~y~~l~~~~~ 1283 (1288)
+|+||+++ ++.|+++|+.|.
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHHC-CCHHHHHHHHHC
T ss_conf 89999858-838999998506
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=721.31 Aligned_cols=577 Identities=36% Similarity=0.572 Sum_probs=487.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 575414207906799999999999999999999999999998559984-3002149999999999999999999999999
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 785 (1288)
++++..+.++.++.+...+++.++.+.+.+..++++..+++.+..... ........+...++++.++..++.+...++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLM 86 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998878999999999999999999999999999999997357402667999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998089544356888835899999855999999999999999999999999999999863999
Q 000777 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1288)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 865 (1288)
.+.+.++..++|.+++++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|++
T Consensus 87 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 87 QTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHH--SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998199999777--9848899999999999999999999999999999999999999981999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998999999999999999999998117999984219999999999999899998999999
Q 000777 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1288)
Q Consensus 866 ~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1288)
++++++.+|++.++.....+..++..++.++...+..+.+.|.++|+++||+|+.++++.++|.+..++..+...+..+.
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998119999983756999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 97688999999999999999999999863974799999999999999999999999999899999999999998423678
Q 000777 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1288)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1025 (1288)
.....+...++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999986997899999999999999999999999999999999999999999838976
Q ss_pred CCCCCCCCCCCCCCCCC-EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89999888655688763-89997888879998864310103897389699998599998888999984237999765998
Q 000777 1026 IDPSDESGTILEDVKGE-IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1288)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~-I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1104 (1288)
....... .+++...+. |+++||+|+|++.++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 325 LPFNEGV-ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SCSSCSB-CCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCCC-CCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 6777787-777678998389998899858998881201127998499889998999997999999982585789837999
Q ss_pred CCEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99505677978874113888357877412199997159999--9999999999998000288975211430200499998
Q 000777 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG--DATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQ 1182 (1288)
Q Consensus 1105 dG~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~--~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~ 1182 (1288)
||+|+++++.+++|++++||||++.+|++|++||+.++.+. ..++++++++++.+++++++.++|+|+||.++++|.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99981117999997322898368832687799998405877665689999999998697999974732013501688786
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEEC
Q ss_conf 99369999999999707997889736677999798999999999871896399981590466403889999598897815
Q 000777 1183 LSGGQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKG 1262 (1288)
Q Consensus 1183 LSgGQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~G 1262 (1288)
||||||||++||||++++|+++|||||||+||++++..+++.+++..+++|+|+||||+++++.||+|++|++|++++.|
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEEC
T ss_conf 89999999999999975999999988666899899999999999996599799994687899759989999899899978
Q ss_pred CHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 935662199937899999851026
Q 000777 1263 KHENLINIPDGFYASLIALHSSAS 1286 (1288)
Q Consensus 1263 t~~eLl~~~~g~y~~l~~~~~~~~ 1286 (1288)
+|+||++++++.|+++++.|....
T Consensus 564 ~~~~l~~~~~~~~~~~~~~q~~~~ 587 (595)
T 2yl4_A 564 KHEELLSKPNGIYRKLMNKQSFIS 587 (595)
T ss_dssp CSCC------C-------------
T ss_pred CHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 899997478729999999743025
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=719.13 Aligned_cols=567 Identities=34% Similarity=0.516 Sum_probs=503.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5754142079067999999999999999999999999999985599843002149999-999999999999999999999
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFF 785 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 785 (1288)
++++..+.++.++.+...+++.++.+++....++++..+++.+..... . ....+. ..++++.++..++.+...++.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 13 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999998843686--5-7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998089544356888835899999855999999999999999999999999999999863999
Q 000777 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1288)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 865 (1288)
.+.+.++..++|.+++++++++|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998099999788--9865899999987999999999999999999999999999999980999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998999999999999999999998117999984219999999999999899998999999
Q 000777 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1288)
Q Consensus 866 ~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1288)
++++++.+|+++++...+.+..++..++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b60_A 168 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999619999983768999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 97688999999999999999999999863974799999999999999999999999999899999999999998423678
Q 000777 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1288)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1025 (1288)
.........++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b60_A 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 327 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999984999899999999999999999999999999999999999999999759987
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 89999888655688763899978888799988643101038973896999985999988889999842379997659989
Q 000777 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1105 (1288)
..+.. .+.+...+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|
T Consensus 328 ~~~~~---~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 403 (582)
T 3b60_A 328 KDEGK---RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 403 (582)
T ss_dssp CCCCC---BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred CCCCC---CCCCCCCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 66777---7777888847999889973999-9744156159976999899989999989999999861068989769799
Q ss_pred CEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 95056779788741138883578774121999971599999999999999998000288975211430200499998993
Q 000777 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1106 G~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSg 1185 (1288)
|+|+++++.+++|++++||||++.+|++|++||+.++..++.++++++++++.+++++++..+|+|+||.++++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSg 483 (582)
T 3b60_A 404 GHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483 (582)
T ss_dssp TEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCH
T ss_pred CEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 99823069999996080880687477878999985459999899999999998497999984504114511479887899
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHH
Q ss_conf 69999999999707997889736677999798999999999871896399981590466403889999598897815935
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1186 GQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~ 1265 (1288)
|||||++||||++++|+++|||||||+||++++..+++.+++..+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 99999999999972899899978655579899999999999996799799994547789859989999788898845899
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 662199937899999851
Q 000777 1266 NLINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1266 eLl~~~~g~y~~l~~~~~ 1283 (1288)
||+++ ++.|+++++.|.
T Consensus 564 ~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 564 ELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHH-TSSHHHHHHHTC
T ss_pred HHHHC-CCHHHHHHHHHC
T ss_conf 99876-988999999750
No 10
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=718.91 Aligned_cols=567 Identities=32% Similarity=0.460 Sum_probs=503.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5754142079067999999999999999999999999999985599843002149999-999999999999999999999
Q 000777 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFF 785 (1288)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 785 (1288)
++++..+.++.++.+...+++.++.+++....++++..+++.+....+ . ....+. ..++++.++..++.+...++.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988999999999999999999999999999999999864686--6-7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998089544356888835899999855999999999999999999999999999999863999
Q 000777 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1288)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~~~G~i~~r~~~d~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 865 (1288)
.+.+.++..++|.++++++++.|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998699999778--9878999999988999999999999999999999999999999982999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998999999999999999999998117999984219999999999999899998999999
Q 000777 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1288)
Q Consensus 866 ~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1288)
++++++.+|+++++...+.+..++..++.++...+..+.+.|.+.|+++||+|+.++.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999519999970875999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 97688999999999999999999999863974799999999999999999999999999899999999999998423678
Q 000777 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1288)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1025 (1288)
.........++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+.++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999985998899999999999999999999999999999999999999999758976
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 89999888655688763899978888799988643101038973896999985999988889999842379997659989
Q 000777 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1288)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1105 (1288)
..+.. .+.+...+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|
T Consensus 328 ~~~~~---~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNGK---YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCCC---CCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 77777---7777788828999989972899-8654004169987999899989999979999999965778999879899
Q ss_pred CEECCCCCHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 95056779788741138883578774121999971599999999999999998000288975211430200499998993
Q 000777 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQGYDTMVGERGLQLSG 1185 (1288)
Q Consensus 1106 G~di~~~~~~~lR~~i~~v~Qd~~lf~gTi~eNl~~~~~~~~s~~~i~~al~~~~l~~~i~~lp~Gldt~v~e~G~~LSg 1185 (1288)
|+|+++++.+++|++++||||++.+|++|++||+.++..++.++++++++++.+++++++..+|+|+||.++++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCH
T ss_conf 99856388999964858982799053102999985668899999999999998798999984765334510688884799
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHH
Q ss_conf 69999999999707997889736677999798999999999871896399981590466403889999598897815935
Q 000777 1186 GQKQRVAIARAIVKDPKILLLDEATSALDAESERVVQDALDRVMKNRTTVVVAHRLSTIKNADMIAVVKNGVIVEKGKHE 1265 (1288)
Q Consensus 1186 GQrQrlalARAll~~p~ILiLDEpTS~LD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aDrI~vl~~G~ive~Gt~~ 1265 (1288)
|||||++||||++++|+|+|||||||+||++++..+++.+++..+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 99999999999974999999978544689999999999999972899899993688999819989999899899977899
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 662199937899999851
Q 000777 1266 NLINIPDGFYASLIALHS 1283 (1288)
Q Consensus 1266 eLl~~~~g~y~~l~~~~~ 1283 (1288)
||++. ++.|+++++.|.
T Consensus 564 ~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 564 DLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHC-CCHHHHHHHHHH
T ss_conf 99848-858999999861
Done!