Query 000778
Match_columns 1288
No_of_seqs 782 out of 3999
Neff 6.9
Searched_HMMs 46136
Date Mon Apr 1 23:33:40 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 2E-174 4E-179 1556.8 57.2 1055 98-1226 8-1094(1125)
2 PRK05399 DNA mismatch repair p 100.0 4E-138 9E-143 1323.1 87.3 840 324-1280 5-852 (854)
3 TIGR01070 mutS1 DNA mismatch r 100.0 4E-138 9E-143 1314.8 85.0 776 327-1224 1-784 (840)
4 COG0249 MutS Mismatch repair A 100.0 6E-136 1E-140 1279.1 77.0 829 324-1267 3-833 (843)
5 KOG0218 Mismatch repair MSH3 [ 100.0 2E-128 4E-133 1114.4 56.8 850 325-1226 160-1032(1070)
6 KOG0219 Mismatch repair ATPase 100.0 2.8E-91 6.1E-96 824.5 55.6 831 326-1259 11-867 (902)
7 KOG0220 Mismatch repair ATPase 100.0 2.3E-75 4.9E-80 679.1 49.3 698 452-1226 103-816 (867)
8 KOG0221 Mismatch repair ATPase 100.0 3.2E-69 6.9E-74 616.4 39.2 585 601-1223 193-795 (849)
9 PRK00409 recombination and DNA 100.0 3.3E-66 7.3E-71 654.6 53.1 532 674-1260 17-561 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 3.9E-62 8.4E-67 615.9 54.9 525 674-1262 17-558 (771)
11 PF00488 MutS_V: MutS domain V 100.0 2.2E-47 4.8E-52 422.1 19.5 234 978-1223 1-234 (235)
12 COG1193 Mismatch repair ATPase 100.0 1.9E-43 4.1E-48 437.8 35.5 483 675-1226 16-511 (753)
13 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1E-43 2.2E-48 387.8 18.1 216 996-1214 2-218 (218)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.2E-42 2.5E-47 380.5 18.2 218 994-1214 1-222 (222)
15 cd03285 ABC_MSH2_euk MutS2 hom 100.0 3.6E-41 7.7E-46 370.3 20.3 220 996-1221 2-221 (222)
16 cd03284 ABC_MutS1 MutS1 homolo 100.0 7.3E-39 1.6E-43 350.8 19.6 214 996-1217 2-215 (216)
17 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.5E-37 3.3E-42 339.7 18.7 207 996-1206 2-213 (213)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.4E-37 3E-42 337.2 18.2 201 996-1205 2-203 (204)
19 smart00533 MUTSd DNA-binding d 100.0 1.6E-34 3.5E-39 333.9 31.7 306 669-1006 1-307 (308)
20 smart00534 MUTSac ATPase domai 100.0 1.2E-34 2.6E-39 310.7 17.2 184 1029-1217 1-184 (185)
21 cd03283 ABC_MutS-like MutS-lik 100.0 3.6E-34 7.9E-39 309.9 18.3 196 996-1206 2-199 (199)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 8.1E-33 1.8E-37 300.3 16.2 199 995-1206 1-200 (200)
23 cd03243 ABC_MutS_homologs The 100.0 4.2E-32 9.1E-37 295.2 17.1 201 996-1206 2-202 (202)
24 PF01624 MutS_I: MutS domain I 100.0 9E-31 2E-35 257.9 9.2 107 328-444 1-113 (113)
25 PF05192 MutS_III: MutS domain 99.9 7.9E-22 1.7E-26 214.1 21.0 91 651-742 1-91 (204)
26 COG1120 FepC ABC-type cobalami 99.8 3.4E-20 7.4E-25 204.8 13.2 158 1012-1175 14-222 (258)
27 cd03227 ABC_Class2 ABC-type Cl 99.8 9.8E-20 2.1E-24 191.3 14.4 134 996-1156 2-147 (162)
28 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1E-19 2.2E-24 200.0 12.5 150 1014-1168 18-215 (254)
29 COG1126 GlnQ ABC-type polar am 99.8 6.1E-19 1.3E-23 185.9 14.8 158 1012-1175 14-219 (240)
30 COG1131 CcmA ABC-type multidru 99.8 6.4E-19 1.4E-23 202.1 13.9 158 1013-1175 18-220 (293)
31 COG1127 Ttg2A ABC-type transpo 99.8 5.4E-19 1.2E-23 189.0 12.0 174 992-1176 7-230 (263)
32 COG0411 LivG ABC-type branched 99.8 8.7E-19 1.9E-23 188.6 10.4 161 1012-1176 16-234 (250)
33 COG4152 ABC-type uncharacteriz 99.8 1.4E-18 3.1E-23 185.1 10.8 159 1012-1175 14-213 (300)
34 COG1116 TauB ABC-type nitrate/ 99.7 3.9E-18 8.5E-23 185.1 11.1 152 1013-1168 16-207 (248)
35 COG4555 NatA ABC-type Na+ tran 99.7 8.9E-18 1.9E-22 174.6 11.0 155 1015-1175 17-216 (245)
36 COG0488 Uup ATPase components 99.7 7.7E-17 1.7E-21 196.4 21.0 282 853-1167 189-511 (530)
37 PRK13537 nodulation ABC transp 99.7 1.9E-17 4.2E-22 191.4 14.1 158 1013-1175 20-221 (306)
38 COG1137 YhbG ABC-type (unclass 99.7 8.7E-18 1.9E-22 174.5 9.3 160 1012-1176 16-223 (243)
39 TIGR01188 drrA daunorubicin re 99.7 2.8E-17 6.1E-22 190.0 14.5 158 1013-1175 6-207 (302)
40 cd03214 ABC_Iron-Siderophores_ 99.7 2.4E-17 5.2E-22 176.3 12.8 154 1014-1172 13-178 (180)
41 PRK13536 nodulation factor exp 99.7 2.9E-17 6.2E-22 192.1 13.9 158 1013-1175 54-255 (340)
42 COG3638 ABC-type phosphate/pho 99.7 2.6E-17 5.6E-22 175.8 12.1 160 1012-1175 16-231 (258)
43 COG3842 PotA ABC-type spermidi 99.7 8.9E-18 1.9E-22 193.4 8.4 174 992-1176 4-221 (352)
44 cd03259 ABC_Carb_Solutes_like 99.7 4.9E-17 1.1E-21 178.4 13.8 156 1013-1172 13-211 (213)
45 cd03261 ABC_Org_Solvent_Resist 99.7 5.2E-17 1.1E-21 181.0 13.7 158 1013-1174 13-219 (235)
46 cd03265 ABC_DrrA DrrA is the A 99.7 6.9E-17 1.5E-21 178.2 14.4 158 1013-1174 13-214 (220)
47 COG1125 OpuBA ABC-type proline 99.7 4.5E-17 9.9E-22 174.8 12.1 159 1012-1175 13-219 (309)
48 PRK11247 ssuB aliphatic sulfon 99.7 1.1E-16 2.4E-21 180.5 15.6 158 1013-1174 25-216 (257)
49 PRK10636 putative ABC transpor 99.7 1.5E-15 3.3E-20 192.1 27.3 153 1013-1174 325-510 (638)
50 TIGR02315 ABC_phnC phosphonate 99.7 9.4E-17 2E-21 179.7 14.3 158 1013-1174 15-228 (243)
51 cd03301 ABC_MalK_N The N-termi 99.7 8.2E-17 1.8E-21 176.6 13.4 157 1013-1173 13-212 (213)
52 cd03293 ABC_NrtD_SsuB_transpor 99.7 5.9E-17 1.3E-21 178.8 12.3 157 1013-1173 17-215 (220)
53 TIGR02314 ABC_MetN D-methionin 99.7 9.4E-17 2E-21 187.6 14.5 159 1013-1175 18-224 (343)
54 cd03268 ABC_BcrA_bacitracin_re 99.7 1.3E-16 2.8E-21 174.4 14.7 155 1013-1172 13-206 (208)
55 cd03258 ABC_MetN_methionine_tr 99.7 1.2E-16 2.6E-21 177.8 14.4 157 1014-1174 19-223 (233)
56 TIGR01288 nodI ATP-binding ABC 99.7 9.9E-17 2.2E-21 185.5 14.2 158 1013-1175 17-218 (303)
57 COG1136 SalX ABC-type antimicr 99.7 6.9E-17 1.5E-21 175.4 11.8 151 1013-1169 18-219 (226)
58 COG1124 DppF ABC-type dipeptid 99.7 8.2E-17 1.8E-21 173.3 12.2 155 1014-1174 21-224 (252)
59 COG0410 LivF ABC-type branched 99.7 6.1E-17 1.3E-21 173.2 11.0 152 1013-1175 16-220 (237)
60 PRK11650 ugpC glycerol-3-phosp 99.7 1.1E-16 2.3E-21 188.5 14.1 159 1013-1175 17-218 (356)
61 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 8.9E-17 1.9E-21 177.0 12.4 151 1013-1168 17-216 (218)
62 cd03256 ABC_PhnC_transporter A 99.7 1.5E-16 3.3E-21 177.8 14.3 158 1013-1174 14-227 (241)
63 TIGR00960 3a0501s02 Type II (G 99.7 1.1E-16 2.4E-21 176.0 12.9 150 1014-1168 17-214 (216)
64 cd03226 ABC_cobalt_CbiO_domain 99.7 1E-16 2.2E-21 175.0 12.3 153 1013-1170 13-204 (205)
65 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.6E-16 3.4E-21 180.7 14.0 158 1013-1174 37-243 (269)
66 cd03219 ABC_Mj1267_LivG_branch 99.7 1.7E-16 3.6E-21 177.0 13.9 157 1013-1174 13-225 (236)
67 cd03269 ABC_putative_ATPase Th 99.7 1.9E-16 4.1E-21 173.4 14.0 155 1013-1172 13-208 (210)
68 cd03218 ABC_YhbG The ABC trans 99.7 1.9E-16 4E-21 176.1 14.1 157 1013-1174 13-215 (232)
69 PRK09536 btuD corrinoid ABC tr 99.7 1.3E-16 2.9E-21 189.6 13.7 158 1013-1175 16-222 (402)
70 cd03225 ABC_cobalt_CbiO_domain 99.7 1.5E-16 3.4E-21 174.2 13.2 151 1013-1168 14-210 (211)
71 PRK11153 metN DL-methionine tr 99.7 1.4E-16 3.1E-21 187.0 13.7 159 1013-1175 18-224 (343)
72 TIGR01186 proV glycine betaine 99.7 1.6E-16 3.4E-21 186.8 13.9 160 1012-1175 5-213 (363)
73 PRK13637 cbiO cobalt transport 99.7 1.6E-16 3.4E-21 182.4 13.6 158 1013-1174 20-227 (287)
74 cd03266 ABC_NatA_sodium_export 99.7 2.3E-16 4.9E-21 173.7 14.3 154 1014-1172 19-216 (218)
75 PRK11432 fbpC ferric transport 99.7 1.8E-16 3.9E-21 186.1 14.2 173 992-1175 5-220 (351)
76 cd03267 ABC_NatA_like Similar 99.7 2.1E-16 4.5E-21 176.3 13.9 156 1013-1172 34-234 (236)
77 PRK09452 potA putrescine/sperm 99.7 1.8E-16 3.9E-21 187.4 14.0 173 992-1175 13-228 (375)
78 cd03296 ABC_CysA_sulfate_impor 99.7 1.4E-16 3E-21 178.0 12.5 158 1013-1174 15-219 (239)
79 COG1122 CbiO ABC-type cobalt t 99.7 7.4E-17 1.6E-21 178.2 10.1 159 1013-1175 17-222 (235)
80 TIGR03265 PhnT2 putative 2-ami 99.7 1.6E-16 3.4E-21 186.8 13.5 159 1013-1175 17-218 (353)
81 PRK11300 livG leucine/isoleuci 99.7 2.6E-16 5.7E-21 177.5 14.4 158 1013-1174 18-236 (255)
82 TIGR03522 GldA_ABC_ATP gliding 99.7 1.8E-16 4E-21 183.1 13.4 157 1013-1175 15-215 (301)
83 TIGR03410 urea_trans_UrtE urea 99.7 2.6E-16 5.6E-21 174.8 14.1 158 1013-1174 13-214 (230)
84 PRK11264 putative amino-acid A 99.7 3E-16 6.5E-21 176.5 14.8 157 1013-1174 16-226 (250)
85 PRK09984 phosphonate/organopho 99.7 2.2E-16 4.7E-21 178.9 13.7 158 1013-1174 17-235 (262)
86 COG1118 CysA ABC-type sulfate/ 99.7 1.6E-16 3.4E-21 175.3 12.0 159 1014-1176 16-222 (345)
87 COG3839 MalK ABC-type sugar tr 99.7 5.9E-17 1.3E-21 185.7 8.9 155 1015-1175 18-217 (338)
88 PRK11000 maltose/maltodextrin 99.7 1.8E-16 4E-21 187.6 13.3 159 1013-1175 16-217 (369)
89 TIGR02673 FtsE cell division A 99.7 2.1E-16 4.6E-21 173.5 12.9 151 1013-1168 15-213 (214)
90 PRK13647 cbiO cobalt transport 99.7 2E-16 4.3E-21 180.4 12.9 158 1013-1175 18-221 (274)
91 cd03263 ABC_subfamily_A The AB 99.7 3.3E-16 7.2E-21 172.7 14.1 156 1013-1174 15-214 (220)
92 PRK10851 sulfate/thiosulfate t 99.7 2.5E-16 5.4E-21 185.2 13.7 159 1013-1175 15-220 (353)
93 PRK13651 cobalt transporter AT 99.7 2.9E-16 6.3E-21 181.4 14.0 157 1014-1175 21-248 (305)
94 COG2884 FtsE Predicted ATPase 99.7 5.8E-16 1.3E-20 160.1 14.5 157 1012-1174 14-219 (223)
95 TIGR03258 PhnT 2-aminoethylpho 99.7 2E-16 4.3E-21 186.4 12.7 159 1013-1175 18-222 (362)
96 cd03262 ABC_HisP_GlnQ_permease 99.7 3.4E-16 7.5E-21 171.6 13.7 151 1013-1168 13-211 (213)
97 COG4586 ABC-type uncharacteriz 99.7 4.8E-16 1E-20 168.5 14.3 158 1014-1175 38-240 (325)
98 PRK13641 cbiO cobalt transport 99.7 3.5E-16 7.6E-21 179.5 14.2 157 1014-1175 21-228 (287)
99 TIGR02211 LolD_lipo_ex lipopro 99.7 3.4E-16 7.4E-21 172.7 13.5 154 1013-1171 18-220 (221)
100 cd03235 ABC_Metallic_Cations A 99.7 5.2E-16 1.1E-20 170.3 14.8 151 1013-1168 12-208 (213)
101 PRK11614 livF leucine/isoleuci 99.7 3.8E-16 8.3E-21 174.3 14.0 157 1013-1174 18-219 (237)
102 COG1135 AbcC ABC-type metal io 99.7 3.7E-16 8.1E-21 172.8 13.5 158 1013-1175 19-225 (339)
103 PRK10584 putative ABC transpor 99.7 3.8E-16 8.3E-21 173.2 13.8 153 1014-1171 24-225 (228)
104 PRK14250 phosphate ABC transpo 99.7 4E-16 8.6E-21 174.6 14.0 158 1013-1174 16-214 (241)
105 TIGR01184 ntrCD nitrate transp 99.7 2.3E-16 5E-21 175.3 12.0 153 1017-1174 2-197 (230)
106 PRK13652 cbiO cobalt transport 99.7 3.8E-16 8.1E-21 178.4 13.8 158 1014-1175 18-221 (277)
107 PRK10575 iron-hydroxamate tran 99.7 4.2E-16 9.1E-21 176.9 14.0 171 993-1174 11-230 (265)
108 PRK10253 iron-enterobactin tra 99.7 4.7E-16 1E-20 176.5 14.4 158 1013-1174 20-226 (265)
109 cd03224 ABC_TM1139_LivF_branch 99.7 4.4E-16 9.6E-21 171.9 13.8 156 1014-1174 14-214 (222)
110 PRK09493 glnQ glutamine ABC tr 99.7 5.1E-16 1.1E-20 173.6 14.5 157 1013-1174 14-218 (240)
111 PRK11831 putative ABC transpor 99.7 5.3E-16 1.1E-20 176.5 14.8 158 1013-1174 20-226 (269)
112 cd03298 ABC_ThiQ_thiamine_tran 99.7 3.7E-16 7.9E-21 171.3 12.9 151 1018-1172 16-209 (211)
113 PRK11248 tauB taurine transpor 99.7 3E-16 6.4E-21 177.1 12.4 157 1013-1174 14-213 (255)
114 cd03292 ABC_FtsE_transporter F 99.7 4.2E-16 9.1E-21 171.1 13.2 150 1014-1168 15-212 (214)
115 cd03232 ABC_PDR_domain2 The pl 99.7 1.8E-16 3.9E-21 171.3 10.1 155 1013-1172 20-190 (192)
116 cd03216 ABC_Carb_Monos_I This 99.7 3E-16 6.4E-21 165.1 11.5 145 1014-1171 14-161 (163)
117 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 4.8E-16 1E-20 173.4 13.8 157 1013-1174 14-214 (236)
118 COG1119 ModF ABC-type molybden 99.7 2.9E-16 6.2E-21 169.2 11.4 160 1011-1174 42-255 (257)
119 PRK10908 cell division protein 99.7 7.2E-16 1.6E-20 170.3 14.9 155 1013-1172 15-217 (222)
120 PRK11607 potG putrescine trans 99.7 4.2E-16 9E-21 184.6 13.8 173 992-1175 18-233 (377)
121 TIGR03005 ectoine_ehuA ectoine 99.7 5.9E-16 1.3E-20 174.4 14.4 158 1013-1174 13-229 (252)
122 cd03264 ABC_drug_resistance_li 99.7 6E-16 1.3E-20 169.6 13.9 152 1014-1172 14-209 (211)
123 TIGR02770 nickel_nikD nickel i 99.7 4.2E-16 9.2E-21 173.2 12.8 156 1015-1174 1-208 (230)
124 cd03260 ABC_PstB_phosphate_tra 99.7 7.7E-16 1.7E-20 170.7 14.8 155 1013-1174 13-222 (227)
125 cd03230 ABC_DR_subfamily_A Thi 99.7 3E-16 6.5E-21 166.7 11.0 144 1014-1168 14-171 (173)
126 PRK11629 lolD lipoprotein tran 99.7 4.2E-16 9E-21 173.5 12.6 156 1013-1173 22-226 (233)
127 TIGR01277 thiQ thiamine ABC tr 99.7 5.7E-16 1.2E-20 170.1 13.5 155 1016-1174 14-211 (213)
128 TIGR03740 galliderm_ABC gallid 99.7 5.6E-16 1.2E-20 171.3 13.6 156 1013-1174 13-206 (223)
129 PRK10895 lipopolysaccharide AB 99.7 6.3E-16 1.4E-20 173.0 14.1 157 1013-1174 16-219 (241)
130 PRK13646 cbiO cobalt transport 99.7 6.2E-16 1.3E-20 177.4 14.2 157 1014-1174 21-228 (286)
131 TIGR02769 nickel_nikE nickel i 99.7 5.9E-16 1.3E-20 175.7 13.9 159 1013-1175 24-234 (265)
132 cd03295 ABC_OpuCA_Osmoprotecti 99.7 6.1E-16 1.3E-20 173.2 13.8 157 1014-1174 15-218 (242)
133 PRK13650 cbiO cobalt transport 99.7 6E-16 1.3E-20 176.9 14.0 156 1014-1174 21-222 (279)
134 PRK13638 cbiO cobalt transport 99.7 6.4E-16 1.4E-20 176.0 14.0 158 1013-1175 14-219 (271)
135 cd03257 ABC_NikE_OppD_transpor 99.7 8.2E-16 1.8E-20 170.4 14.4 155 1014-1172 19-226 (228)
136 TIGR01978 sufC FeS assembly AT 99.7 7.3E-16 1.6E-20 172.5 14.1 158 1013-1175 13-228 (243)
137 PRK13634 cbiO cobalt transport 99.7 6.3E-16 1.4E-20 177.7 13.9 158 1013-1174 20-228 (290)
138 PRK10070 glycine betaine trans 99.7 5.7E-16 1.2E-20 184.1 13.8 159 1013-1175 41-248 (400)
139 PRK11147 ABC transporter ATPas 99.7 3.3E-14 7.1E-19 180.3 30.6 150 1013-1171 332-517 (635)
140 PRK13633 cobalt transporter AT 99.7 6E-16 1.3E-20 177.0 13.5 157 1013-1174 23-226 (280)
141 PRK13636 cbiO cobalt transport 99.7 7.1E-16 1.5E-20 176.7 14.0 159 1013-1175 19-225 (283)
142 PRK13548 hmuV hemin importer A 99.7 8.2E-16 1.8E-20 173.8 14.3 158 1013-1174 15-223 (258)
143 COG1117 PstB ABC-type phosphat 99.6 6.3E-16 1.4E-20 162.5 12.2 158 1012-1175 19-231 (253)
144 TIGR03411 urea_trans_UrtD urea 99.6 8.1E-16 1.7E-20 172.2 13.9 156 1013-1174 15-224 (242)
145 PRK09544 znuC high-affinity zi 99.6 5.8E-16 1.3E-20 174.3 12.8 156 1013-1173 17-201 (251)
146 PRK13635 cbiO cobalt transport 99.6 6.9E-16 1.5E-20 176.4 13.6 157 1013-1174 20-222 (279)
147 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 7.5E-16 1.6E-20 170.5 13.5 152 1012-1172 34-222 (224)
148 PRK15112 antimicrobial peptide 99.6 6E-16 1.3E-20 175.8 13.0 158 1013-1174 26-232 (267)
149 PRK15079 oligopeptide ABC tran 99.6 6.8E-16 1.5E-20 180.1 13.6 159 1013-1175 34-245 (331)
150 PRK14268 phosphate ABC transpo 99.6 8.6E-16 1.9E-20 173.7 13.9 156 1013-1174 25-235 (258)
151 cd03213 ABCG_EPDR ABCG transpo 99.6 5.5E-16 1.2E-20 167.8 11.7 154 1013-1172 22-192 (194)
152 PRK11231 fecE iron-dicitrate t 99.6 1.1E-15 2.4E-20 172.5 14.1 156 1013-1173 15-219 (255)
153 TIGR00968 3a0106s01 sulfate AB 99.6 1E-15 2.2E-20 170.8 13.7 158 1013-1174 13-213 (237)
154 PRK11022 dppD dipeptide transp 99.6 7.6E-16 1.7E-20 179.5 12.9 158 1014-1175 21-237 (326)
155 PRK13644 cbiO cobalt transport 99.6 1E-15 2.2E-20 174.6 13.4 156 1014-1175 16-218 (274)
156 PRK15093 antimicrobial peptide 99.6 1E-15 2.2E-20 179.0 13.8 159 1013-1175 20-242 (330)
157 TIGR02323 CP_lyasePhnK phospho 99.6 1.1E-15 2.3E-20 172.4 13.4 157 1014-1174 17-231 (253)
158 PRK10418 nikD nickel transport 99.6 1E-15 2.2E-20 172.6 13.3 157 1014-1174 17-223 (254)
159 cd03217 ABC_FeS_Assembly ABC-t 99.6 7.5E-16 1.6E-20 167.5 11.7 157 1013-1174 13-187 (200)
160 PRK13648 cbiO cobalt transport 99.6 9.8E-16 2.1E-20 174.3 13.1 156 1014-1174 23-224 (269)
161 COG4559 ABC-type hemin transpo 99.6 1.4E-15 2.9E-20 159.7 12.9 160 1012-1176 13-225 (259)
162 cd03238 ABC_UvrA The excision 99.6 7.6E-16 1.7E-20 163.5 11.2 145 1013-1168 8-164 (176)
163 TIGR03415 ABC_choXWV_ATP choli 99.6 8E-16 1.7E-20 181.6 12.6 159 1013-1175 37-248 (382)
164 PRK11124 artP arginine transpo 99.6 1.9E-15 4.2E-20 169.2 14.9 157 1013-1174 15-223 (242)
165 PRK13643 cbiO cobalt transport 99.6 1.1E-15 2.5E-20 175.4 13.4 157 1014-1175 20-227 (288)
166 PRK10771 thiQ thiamine transpo 99.6 1.2E-15 2.5E-20 169.9 13.0 153 1018-1174 17-212 (232)
167 cd03297 ABC_ModC_molybdenum_tr 99.6 1.4E-15 3E-20 167.1 13.4 151 1018-1173 16-213 (214)
168 PRK10619 histidine/lysine/argi 99.6 1.6E-15 3.6E-20 171.3 14.3 157 1013-1174 18-234 (257)
169 cd03229 ABC_Class3 This class 99.6 4.6E-16 9.9E-21 166.1 9.2 146 1014-1167 14-176 (178)
170 PRK14275 phosphate ABC transpo 99.6 1.4E-15 3E-20 174.5 13.9 156 1013-1174 52-263 (286)
171 cd03215 ABC_Carb_Monos_II This 99.6 4.8E-16 1E-20 166.5 9.3 147 1015-1168 15-180 (182)
172 PRK10419 nikE nickel transport 99.6 1.6E-15 3.5E-20 172.4 14.1 159 1013-1175 25-235 (268)
173 PRK13639 cbiO cobalt transport 99.6 1.2E-15 2.5E-20 174.2 13.0 157 1014-1175 16-220 (275)
174 TIGR03873 F420-0_ABC_ATP propo 99.6 1.4E-15 3E-20 171.8 13.5 157 1013-1174 14-219 (256)
175 PRK11308 dppF dipeptide transp 99.6 1.1E-15 2.4E-20 178.2 13.0 159 1013-1175 28-238 (327)
176 PRK14242 phosphate transporter 99.6 2E-15 4.3E-20 170.2 14.7 156 1013-1174 19-230 (253)
177 PRK13632 cbiO cobalt transport 99.6 1.4E-15 3E-20 173.3 13.6 157 1013-1174 22-224 (271)
178 PRK11701 phnK phosphonate C-P 99.6 1.1E-15 2.4E-20 172.8 12.5 158 1013-1174 19-234 (258)
179 PRK10247 putative ABC transpor 99.6 1.9E-15 4.1E-20 167.5 14.1 163 992-1166 6-211 (225)
180 PRK13649 cbiO cobalt transport 99.6 1.5E-15 3.3E-20 173.8 13.8 156 1014-1174 21-227 (280)
181 cd03300 ABC_PotA_N PotA is an 99.6 1.9E-15 4.2E-20 168.1 14.1 158 1013-1174 13-213 (232)
182 cd03246 ABCC_Protease_Secretio 99.6 1.1E-15 2.5E-20 162.2 11.8 141 1014-1168 16-171 (173)
183 PRK13645 cbiO cobalt transport 99.6 1.2E-15 2.5E-20 175.5 12.7 157 1014-1174 25-233 (289)
184 TIGR01166 cbiO cobalt transpor 99.6 1.1E-15 2.4E-20 164.7 11.7 138 1013-1153 5-190 (190)
185 COG3840 ThiQ ABC-type thiamine 99.6 9.1E-16 2E-20 157.2 10.2 154 1018-1175 17-213 (231)
186 PRK13640 cbiO cobalt transport 99.6 1.1E-15 2.4E-20 175.1 12.2 156 1014-1174 21-225 (282)
187 PRK03695 vitamin B12-transport 99.6 2.1E-15 4.6E-20 169.5 14.0 155 1015-1174 11-215 (248)
188 TIGR02142 modC_ABC molybdenum 99.6 1.5E-15 3.3E-20 179.2 13.3 154 1018-1175 15-215 (354)
189 TIGR00972 3a0107s01c2 phosphat 99.6 2E-15 4.4E-20 169.5 13.6 155 1014-1174 15-225 (247)
190 PRK10938 putative molybdenum t 99.6 1.9E-15 4.1E-20 186.4 14.5 157 1013-1174 16-217 (490)
191 PRK09473 oppD oligopeptide tra 99.6 1.7E-15 3.6E-20 176.9 13.2 177 992-1175 11-245 (330)
192 PRK11144 modC molybdate transp 99.6 1.4E-15 3E-20 179.2 12.7 154 1018-1175 16-212 (352)
193 PRK15056 manganese/iron transp 99.6 1.6E-15 3.6E-20 172.7 12.9 156 1013-1174 20-223 (272)
194 PRK13546 teichoic acids export 99.6 1.6E-15 3.5E-20 171.7 12.7 156 1012-1173 36-224 (264)
195 PRK15439 autoinducer 2 ABC tra 99.6 1.4E-15 3.1E-20 188.1 13.1 158 1013-1175 24-223 (510)
196 PRK14237 phosphate transporter 99.6 3.2E-15 6.9E-20 169.9 14.8 157 1013-1175 33-245 (267)
197 PRK14273 phosphate ABC transpo 99.6 3.4E-15 7.5E-20 168.4 15.0 170 992-1174 6-231 (254)
198 PRK09700 D-allose transporter 99.6 1.7E-15 3.6E-20 187.7 13.6 158 1013-1175 18-228 (510)
199 cd03247 ABCC_cytochrome_bd The 99.6 2.2E-15 4.8E-20 160.8 12.5 147 1014-1172 16-176 (178)
200 cd03245 ABCC_bacteriocin_expor 99.6 2.9E-15 6.4E-20 165.2 13.7 153 1013-1172 17-218 (220)
201 PRK13631 cbiO cobalt transport 99.6 2.9E-15 6.2E-20 174.2 14.2 178 991-1175 19-259 (320)
202 cd03299 ABC_ModC_like Archeal 99.6 3E-15 6.5E-20 166.9 13.7 156 1015-1174 14-212 (235)
203 PRK14245 phosphate ABC transpo 99.6 4E-15 8.7E-20 167.5 14.8 157 1013-1175 16-228 (250)
204 PRK13543 cytochrome c biogenes 99.6 2.8E-15 6E-20 164.8 13.0 162 992-1165 10-210 (214)
205 cd03228 ABCC_MRP_Like The MRP 99.6 2.2E-15 4.8E-20 159.7 11.7 140 1014-1168 16-170 (171)
206 PRK14274 phosphate ABC transpo 99.6 4.6E-15 1E-19 167.8 15.0 171 992-1175 11-237 (259)
207 PRK13549 xylose transporter AT 99.6 1.8E-15 3.9E-20 187.2 12.7 157 1013-1174 18-225 (506)
208 CHL00131 ycf16 sulfate ABC tra 99.6 3.3E-15 7.2E-20 168.3 13.6 172 992-1175 6-235 (252)
209 PRK13547 hmuV hemin importer A 99.6 3.1E-15 6.7E-20 170.3 13.4 158 1013-1174 14-237 (272)
210 PRK13545 tagH teichoic acids e 99.6 2.2E-15 4.8E-20 181.1 12.6 156 1013-1174 37-225 (549)
211 cd03237 ABC_RNaseL_inhibitor_d 99.6 2.9E-15 6.2E-20 168.1 12.7 139 1025-1166 23-190 (246)
212 PRK10762 D-ribose transporter 99.6 2.5E-15 5.4E-20 185.7 13.5 157 1013-1174 17-223 (501)
213 PRK14235 phosphate transporter 99.6 3.8E-15 8.3E-20 169.3 13.9 156 1013-1174 32-244 (267)
214 cd03234 ABCG_White The White s 99.6 3.7E-15 8E-20 165.2 13.4 156 1013-1173 20-225 (226)
215 PRK15177 Vi polysaccharide exp 99.6 1.9E-15 4.1E-20 166.0 11.0 153 1015-1174 2-185 (213)
216 PRK14265 phosphate ABC transpo 99.6 3.8E-15 8.3E-20 169.9 13.9 156 1013-1174 33-251 (274)
217 PRK15439 autoinducer 2 ABC tra 99.6 2.2E-15 4.7E-20 186.5 12.7 155 1015-1174 278-485 (510)
218 PRK14239 phosphate transporter 99.6 4.9E-15 1.1E-19 166.8 14.5 156 1013-1174 18-229 (252)
219 PRK14269 phosphate ABC transpo 99.6 3.3E-15 7.2E-20 167.7 13.0 156 1013-1174 15-223 (246)
220 PRK10744 pstB phosphate transp 99.6 5.1E-15 1.1E-19 167.6 14.6 170 992-1174 12-237 (260)
221 TIGR03608 L_ocin_972_ABC putat 99.6 3.5E-15 7.5E-20 162.8 12.6 142 1013-1158 11-201 (206)
222 TIGR03269 met_CoM_red_A2 methy 99.6 3.1E-15 6.7E-20 185.8 13.8 158 1013-1174 13-251 (520)
223 PRK13642 cbiO cobalt transport 99.6 3.7E-15 8E-20 170.3 13.3 157 1014-1175 21-223 (277)
224 COG1134 TagH ABC-type polysacc 99.6 4E-15 8.7E-20 160.8 12.3 156 1013-1175 40-230 (249)
225 PRK14244 phosphate ABC transpo 99.6 6.2E-15 1.3E-19 166.0 14.0 156 1013-1174 18-230 (251)
226 cd03244 ABCC_MRP_domain2 Domai 99.6 6.6E-15 1.4E-19 162.5 13.9 155 1013-1174 17-219 (221)
227 PRK14248 phosphate ABC transpo 99.6 7.2E-15 1.6E-19 167.1 14.6 170 992-1174 20-245 (268)
228 PRK14254 phosphate ABC transpo 99.6 5.4E-15 1.2E-19 169.5 13.6 156 1013-1174 52-262 (285)
229 cd03233 ABC_PDR_domain1 The pl 99.6 5E-15 1.1E-19 161.3 12.7 157 1012-1172 19-200 (202)
230 cd03222 ABC_RNaseL_inhibitor T 99.6 2.6E-15 5.7E-20 159.6 10.1 133 1014-1167 14-147 (177)
231 COG4619 ABC-type uncharacteriz 99.6 4E-15 8.7E-20 150.5 10.8 154 1011-1168 14-210 (223)
232 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 5.1E-15 1.1E-19 165.3 13.0 155 1013-1174 16-219 (238)
233 PRK09580 sufC cysteine desulfu 99.6 6.2E-15 1.3E-19 165.6 13.7 157 1013-1174 14-228 (248)
234 PRK14267 phosphate ABC transpo 99.6 7.2E-15 1.6E-19 165.7 14.2 156 1013-1174 17-230 (253)
235 COG4674 Uncharacterized ABC-ty 99.6 2.7E-15 5.9E-20 155.3 9.7 159 1012-1176 17-230 (249)
236 TIGR02982 heterocyst_DevA ABC 99.6 6E-15 1.3E-19 162.8 13.2 152 1013-1169 18-218 (220)
237 PRK15134 microcin C ABC transp 99.6 4.6E-15 9.9E-20 184.6 13.6 159 1013-1175 299-509 (529)
238 cd03250 ABCC_MRP_domain1 Domai 99.6 4.6E-15 9.9E-20 161.8 11.9 149 1014-1168 19-203 (204)
239 cd03252 ABCC_Hemolysin The ABC 99.6 6.4E-15 1.4E-19 164.4 13.4 155 1013-1174 15-218 (237)
240 PRK14270 phosphate ABC transpo 99.6 7.2E-15 1.6E-19 165.5 13.8 156 1013-1174 17-228 (251)
241 PRK14247 phosphate ABC transpo 99.6 7.7E-15 1.7E-19 165.1 14.0 156 1013-1174 16-227 (250)
242 PRK10982 galactose/methyl gala 99.6 4.6E-15 1E-19 182.9 13.2 157 1013-1174 11-216 (491)
243 PRK14241 phosphate transporter 99.6 8.3E-15 1.8E-19 165.7 14.2 156 1013-1174 17-235 (258)
244 PRK13549 xylose transporter AT 99.6 4.2E-15 9.2E-20 183.9 12.8 157 1013-1174 275-487 (506)
245 cd03251 ABCC_MsbA MsbA is an e 99.6 5.6E-15 1.2E-19 164.5 12.5 154 1014-1174 16-218 (234)
246 PRK14264 phosphate ABC transpo 99.6 8.7E-15 1.9E-19 169.4 14.5 171 991-1174 43-282 (305)
247 PRK10762 D-ribose transporter 99.6 4.8E-15 1E-19 183.2 13.1 156 1014-1174 266-477 (501)
248 PRK13538 cytochrome c biogenes 99.6 4.9E-15 1.1E-19 161.6 11.6 142 1013-1158 14-197 (204)
249 cd03223 ABCD_peroxisomal_ALDP 99.6 2.9E-15 6.2E-20 158.2 9.3 136 1014-1167 15-162 (166)
250 PRK11288 araG L-arabinose tran 99.6 4.3E-15 9.4E-20 183.6 12.3 156 1013-1173 17-221 (501)
251 PRK14271 phosphate ABC transpo 99.6 8.4E-15 1.8E-19 167.2 13.7 156 1013-1174 34-244 (276)
252 PRK14259 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 165.6 14.6 149 1013-1167 26-228 (269)
253 PRK09700 D-allose transporter 99.6 5.8E-15 1.3E-19 182.9 13.3 154 1015-1173 278-490 (510)
254 cd03231 ABC_CcmA_heme_exporter 99.6 8.6E-15 1.9E-19 159.4 13.1 143 1013-1158 13-193 (201)
255 COG4175 ProV ABC-type proline/ 99.6 6.4E-15 1.4E-19 162.6 12.0 159 1014-1176 42-249 (386)
256 PRK14256 phosphate ABC transpo 99.6 1.1E-14 2.3E-19 164.2 14.1 157 1013-1175 17-230 (252)
257 PRK14246 phosphate ABC transpo 99.6 7.5E-15 1.6E-19 165.9 12.9 157 1012-1174 22-234 (257)
258 COG0444 DppD ABC-type dipeptid 99.6 7.1E-15 1.5E-19 165.1 12.4 157 1013-1175 18-237 (316)
259 PRK14253 phosphate ABC transpo 99.6 1.5E-14 3.2E-19 162.8 15.1 156 1013-1174 16-226 (249)
260 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 3.6E-15 7.9E-20 153.7 9.2 128 1014-1167 14-142 (144)
261 PRK14251 phosphate ABC transpo 99.6 1E-14 2.2E-19 164.2 13.7 156 1013-1174 17-228 (251)
262 PRK14240 phosphate transporter 99.6 1.2E-14 2.7E-19 163.5 14.1 155 1014-1174 17-227 (250)
263 PRK14262 phosphate ABC transpo 99.6 1.3E-14 2.8E-19 163.3 14.3 156 1013-1174 16-227 (250)
264 PRK11288 araG L-arabinose tran 99.6 8.8E-15 1.9E-19 180.9 14.1 156 1014-1174 267-478 (501)
265 cd03254 ABCC_Glucan_exporter_l 99.6 1.2E-14 2.6E-19 161.2 13.7 154 1014-1174 17-219 (229)
266 PRK15134 microcin C ABC transp 99.6 5.5E-15 1.2E-19 183.9 12.1 158 1013-1174 22-239 (529)
267 PRK14261 phosphate ABC transpo 99.6 1.4E-14 3E-19 163.4 14.3 156 1013-1174 19-230 (253)
268 TIGR02633 xylG D-xylose ABC tr 99.6 6.2E-15 1.3E-19 182.3 12.4 157 1013-1174 14-223 (500)
269 COG4608 AppF ABC-type oligopep 99.6 7.6E-15 1.6E-19 161.6 11.4 155 1014-1175 27-193 (268)
270 PRK10261 glutathione transport 99.6 8.4E-15 1.8E-19 185.1 13.4 158 1013-1175 29-252 (623)
271 TIGR03269 met_CoM_red_A2 methy 99.6 1.1E-14 2.3E-19 181.0 14.0 158 1013-1174 297-510 (520)
272 cd03253 ABCC_ATM1_transporter 99.6 1.3E-14 2.8E-19 161.8 13.4 155 1013-1174 14-217 (236)
273 PRK14249 phosphate ABC transpo 99.6 1.7E-14 3.6E-19 162.5 14.3 156 1013-1174 17-228 (251)
274 PRK10261 glutathione transport 99.6 1E-14 2.2E-19 184.4 13.8 159 1013-1175 337-547 (623)
275 PRK14243 phosphate transporter 99.6 1.8E-14 3.8E-19 163.6 14.4 156 1013-1174 23-241 (264)
276 cd03289 ABCC_CFTR2 The CFTR su 99.6 1.7E-14 3.8E-19 164.1 14.3 155 1013-1174 17-218 (275)
277 COG4604 CeuD ABC-type enteroch 99.6 1.2E-14 2.6E-19 150.8 11.7 160 1012-1175 13-219 (252)
278 PRK10938 putative molybdenum t 99.6 5.7E-15 1.2E-19 182.1 11.1 157 1013-1173 273-484 (490)
279 PRK13539 cytochrome c biogenes 99.6 1.4E-14 3.1E-19 158.4 13.0 140 1013-1155 15-192 (207)
280 PRK14257 phosphate ABC transpo 99.6 1.6E-14 3.5E-19 168.5 14.2 173 992-1175 79-307 (329)
281 PRK14272 phosphate ABC transpo 99.6 2E-14 4.3E-19 162.0 14.4 156 1013-1174 17-229 (252)
282 COG4598 HisP ABC-type histidin 99.6 1.6E-14 3.4E-19 147.5 11.9 158 1013-1175 19-235 (256)
283 PRK13409 putative ATPase RIL; 99.6 7.5E-15 1.6E-19 183.4 11.8 150 1014-1167 353-529 (590)
284 PRK14258 phosphate ABC transpo 99.6 2.5E-14 5.4E-19 162.1 14.9 157 1014-1174 21-238 (261)
285 COG0396 sufC Cysteine desulfur 99.6 2.2E-14 4.7E-19 153.1 13.3 172 993-1175 3-228 (251)
286 PRK14238 phosphate transporter 99.6 2.2E-14 4.8E-19 163.4 14.5 156 1013-1174 37-248 (271)
287 cd03369 ABCC_NFT1 Domain 2 of 99.6 1.9E-14 4.1E-19 157.3 13.4 154 1014-1174 22-205 (207)
288 COG0488 Uup ATPase components 99.6 3.5E-14 7.6E-19 173.4 17.1 148 1012-1168 15-226 (530)
289 cd00267 ABC_ATPase ABC (ATP-bi 99.6 1.1E-14 2.3E-19 152.2 10.9 140 1014-1166 13-154 (157)
290 PRK14236 phosphate transporter 99.6 3E-14 6.5E-19 162.4 15.4 171 992-1175 24-250 (272)
291 PRK14255 phosphate ABC transpo 99.6 2.4E-14 5.2E-19 161.3 14.3 156 1013-1174 18-229 (252)
292 TIGR02324 CP_lyasePhnL phospho 99.6 1.7E-14 3.8E-19 159.5 12.8 143 1013-1158 21-217 (224)
293 cd03248 ABCC_TAP TAP, the Tran 99.6 1.3E-14 2.8E-19 160.7 11.7 148 1014-1168 28-224 (226)
294 TIGR01257 rim_protein retinal- 99.6 1.4E-14 3.1E-19 196.7 13.9 157 1013-1175 1952-2153(2272)
295 COG1129 MglA ABC-type sugar tr 99.6 1.2E-14 2.6E-19 173.1 11.7 159 1012-1175 20-228 (500)
296 PRK14263 phosphate ABC transpo 99.6 3.1E-14 6.7E-19 161.3 14.3 156 1013-1174 21-238 (261)
297 TIGR02633 xylG D-xylose ABC tr 99.5 1.1E-14 2.3E-19 180.2 11.3 156 1013-1173 273-484 (500)
298 TIGR01189 ccmA heme ABC export 99.5 1.9E-14 4.2E-19 156.2 12.0 137 1013-1152 13-189 (198)
299 PRK13540 cytochrome c biogenes 99.5 1.3E-14 2.7E-19 157.9 10.4 139 1013-1155 14-192 (200)
300 TIGR03771 anch_rpt_ABC anchore 99.5 3.7E-14 8E-19 157.0 14.2 145 1025-1174 4-194 (223)
301 PRK14260 phosphate ABC transpo 99.5 4.2E-14 9.1E-19 160.1 14.7 156 1013-1174 20-236 (259)
302 PRK14252 phosphate ABC transpo 99.5 3.9E-14 8.4E-19 160.9 14.4 157 1013-1175 29-243 (265)
303 PRK10982 galactose/methyl gala 99.5 1.5E-14 3.2E-19 178.4 12.0 154 1014-1172 262-471 (491)
304 PRK15064 ABC transporter ATP-b 99.5 1.5E-14 3.2E-19 180.1 11.9 149 1013-1170 14-230 (530)
305 COG1123 ATPase components of v 99.5 1.6E-14 3.5E-19 173.1 11.5 156 1013-1175 304-513 (539)
306 PRK14266 phosphate ABC transpo 99.5 5.1E-14 1.1E-18 158.5 14.6 157 1013-1175 16-228 (250)
307 PRK10636 putative ABC transpor 99.5 1.7E-14 3.6E-19 182.6 11.7 149 1013-1170 14-224 (638)
308 cd03288 ABCC_SUR2 The SUR doma 99.5 4.2E-14 9E-19 159.9 12.8 155 1013-1174 34-236 (257)
309 cd03236 ABC_RNaseL_inhibitor_d 99.5 4.3E-14 9.3E-19 159.3 12.8 146 1014-1166 15-213 (255)
310 PLN03073 ABC transporter F fam 99.5 1.6E-13 3.6E-18 174.5 19.5 150 1013-1171 522-703 (718)
311 cd03290 ABCC_SUR1_N The SUR do 99.5 5.1E-14 1.1E-18 155.2 12.8 149 1014-1167 15-216 (218)
312 TIGR01257 rim_protein retinal- 99.5 3.6E-14 7.7E-19 192.9 13.6 157 1013-1175 943-1143(2272)
313 PRK11819 putative ABC transpor 99.5 2.3E-14 5E-19 179.2 10.9 149 1013-1171 20-239 (556)
314 PRK15064 ABC transporter ATP-b 99.5 3.4E-14 7.4E-19 176.8 12.3 151 1013-1171 332-514 (530)
315 cd03291 ABCC_CFTR1 The CFTR su 99.5 6.7E-14 1.4E-18 159.9 13.1 168 991-1174 37-240 (282)
316 COG1123 ATPase components of v 99.5 4.6E-14 9.9E-19 169.3 12.2 158 1014-1175 23-238 (539)
317 PRK13541 cytochrome c biogenes 99.5 4.3E-14 9.4E-19 153.1 10.6 137 1014-1155 15-188 (195)
318 cd03270 ABC_UvrA_I The excisio 99.5 7.6E-14 1.6E-18 154.8 12.4 155 1013-1173 8-225 (226)
319 COG4181 Predicted ABC-type tra 99.5 1.4E-13 2.9E-18 140.0 12.2 154 1013-1172 23-226 (228)
320 COG4525 TauB ABC-type taurine 99.5 1.4E-13 3E-18 142.7 12.4 152 1013-1168 18-209 (259)
321 PLN03211 ABC transporter G-25; 99.5 7.8E-14 1.7E-18 176.4 11.9 158 1013-1175 81-290 (659)
322 TIGR01187 potA spermidine/putr 99.5 9.2E-14 2E-18 162.2 11.6 141 1032-1175 1-184 (325)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 7.9E-14 1.7E-18 174.3 10.9 150 1013-1171 18-237 (552)
324 PRK13409 putative ATPase RIL; 99.5 1.5E-13 3.3E-18 171.7 13.5 147 1013-1167 87-286 (590)
325 PRK11147 ABC transporter ATPas 99.5 8.4E-14 1.8E-18 176.6 11.2 148 1013-1171 16-232 (635)
326 COG4148 ModC ABC-type molybdat 99.5 1.2E-13 2.5E-18 150.4 10.3 154 1018-1175 16-212 (352)
327 COG2274 SunT ABC-type bacterio 99.5 9.4E-13 2E-17 165.9 19.8 155 1013-1175 486-690 (709)
328 KOG0062 ATPase component of AB 99.5 4.3E-14 9.4E-19 164.6 7.0 148 1011-1166 91-269 (582)
329 PRK11819 putative ABC transpor 99.5 1.4E-13 3E-18 172.2 11.4 147 1013-1167 337-517 (556)
330 COG4133 CcmA ABC-type transpor 99.5 2.6E-13 5.7E-18 140.7 11.3 137 1012-1151 14-191 (209)
331 COG1101 PhnK ABC-type uncharac 99.5 4.5E-13 9.7E-18 141.2 12.9 158 1012-1173 18-230 (263)
332 COG4988 CydD ABC-type transpor 99.5 9.9E-13 2.2E-17 157.3 17.6 222 939-1176 269-538 (559)
333 COG3845 ABC-type uncharacteriz 99.5 2.1E-13 4.5E-18 159.4 11.5 156 1013-1173 17-221 (501)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 1.6E-13 3.4E-18 171.6 11.2 147 1013-1167 335-515 (552)
335 TIGR01842 type_I_sec_PrtD type 99.4 2.5E-12 5.5E-17 160.7 19.8 172 993-1175 316-536 (544)
336 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 2.5E-12 5.3E-17 165.2 20.2 169 993-1175 451-667 (686)
337 COG4161 ArtP ABC-type arginine 99.4 1.1E-12 2.3E-17 131.9 13.0 157 1013-1175 15-224 (242)
338 TIGR00955 3a01204 The Eye Pigm 99.4 4E-13 8.7E-18 169.8 11.8 160 1012-1176 37-251 (617)
339 COG4107 PhnK ABC-type phosphon 99.4 7.7E-13 1.7E-17 134.5 11.2 157 1013-1174 19-234 (258)
340 KOG0927 Predicted transporter 99.4 1.3E-12 2.9E-17 153.1 14.4 211 935-1169 330-583 (614)
341 PLN03073 ABC transporter F fam 99.4 5.1E-13 1.1E-17 170.0 11.8 151 1013-1171 190-420 (718)
342 PRK10790 putative multidrug tr 99.4 3.3E-12 7.2E-17 161.3 19.1 156 1013-1175 354-557 (592)
343 PRK10535 macrolide transporter 99.4 1E-12 2.3E-17 166.8 14.5 158 1013-1176 21-227 (648)
344 PRK13657 cyclic beta-1,2-gluca 99.4 5.1E-12 1.1E-16 159.5 19.9 155 1013-1174 348-551 (588)
345 PRK11174 cysteine/glutathione 99.4 1.2E-12 2.5E-17 165.4 13.4 155 1013-1175 363-566 (588)
346 TIGR01192 chvA glucan exporter 99.4 6.8E-12 1.5E-16 158.0 20.1 155 1013-1174 348-551 (585)
347 PRK11160 cysteine/glutathione 99.4 1.5E-12 3.3E-17 163.5 14.2 156 1013-1175 353-556 (574)
348 PLN03140 ABC transporter G fam 99.4 1.3E-12 2.8E-17 177.0 13.7 159 1013-1176 893-1105(1470)
349 TIGR03375 type_I_sec_LssB type 99.4 1.2E-11 2.6E-16 159.1 21.4 156 1013-1175 478-682 (694)
350 PRK10522 multidrug transporter 99.4 2.5E-12 5.3E-17 160.9 14.5 156 1013-1173 336-530 (547)
351 TIGR02204 MsbA_rel ABC transpo 99.4 9.5E-12 2.1E-16 156.8 19.8 172 993-1175 337-557 (576)
352 KOG0057 Mitochondrial Fe/S clu 99.4 9.8E-12 2.1E-16 146.6 18.3 156 1012-1175 364-568 (591)
353 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.8E-12 3.8E-17 167.2 13.2 154 1013-1175 492-694 (710)
354 TIGR00954 3a01203 Peroxysomal 99.4 1.6E-12 3.6E-17 165.2 12.5 143 1013-1165 465-651 (659)
355 cd03278 ABC_SMC_barmotin Barmo 99.4 3.6E-12 7.9E-17 138.3 13.1 141 1017-1168 14-191 (197)
356 PRK10789 putative multidrug tr 99.4 3.4E-12 7.3E-17 160.3 14.8 156 1013-1175 328-532 (569)
357 TIGR02203 MsbA_lipidA lipid A 99.4 3E-12 6.6E-17 161.0 14.4 156 1013-1175 345-550 (571)
358 PRK11176 lipid transporter ATP 99.4 3.3E-12 7.1E-17 161.1 14.7 156 1013-1175 356-561 (582)
359 cd03279 ABC_sbcCD SbcCD and ot 99.4 2.3E-12 4.9E-17 141.7 10.4 147 1017-1168 18-209 (213)
360 TIGR01846 type_I_sec_HlyB type 99.4 1.5E-11 3.2E-16 158.1 19.5 156 1013-1175 470-674 (694)
361 TIGR00956 3a01205 Pleiotropic 99.3 2.6E-12 5.7E-17 174.5 13.1 159 1013-1176 776-988 (1394)
362 COG4987 CydC ABC-type transpor 99.3 6.5E-12 1.4E-16 148.0 14.4 156 1013-1176 351-556 (573)
363 TIGR01194 cyc_pep_trnsptr cycl 99.3 5.9E-12 1.3E-16 157.6 14.9 156 1013-1173 355-551 (555)
364 TIGR00958 3a01208 Conjugate Tr 99.3 3.5E-12 7.7E-17 164.0 12.6 154 1013-1175 494-696 (711)
365 TIGR01193 bacteriocin_ABC ABC- 99.3 1.9E-11 4E-16 157.7 19.0 155 1013-1175 487-691 (708)
366 TIGR00956 3a01205 Pleiotropic 99.3 2.6E-12 5.7E-17 174.5 11.7 158 1014-1175 75-294 (1394)
367 cd03271 ABC_UvrA_II The excisi 99.3 1.3E-11 2.8E-16 139.1 15.2 94 1076-1174 155-259 (261)
368 KOG0059 Lipid exporter ABCA1 a 99.3 2.7E-12 5.9E-17 167.6 11.2 156 1015-1176 580-782 (885)
369 PF05188 MutS_II: MutS domain 99.3 1.5E-11 3.2E-16 125.1 14.3 129 453-621 1-130 (137)
370 COG4172 ABC-type uncharacteriz 99.3 8.1E-12 1.8E-16 141.9 13.3 174 992-1175 5-241 (534)
371 COG4172 ABC-type uncharacteriz 99.3 3.4E-12 7.4E-17 144.9 10.0 155 1013-1175 300-510 (534)
372 PLN03140 ABC transporter G fam 99.3 3.5E-12 7.5E-17 172.9 9.6 158 1014-1175 179-421 (1470)
373 PTZ00243 ABC transporter; Prov 99.3 7.4E-12 1.6E-16 171.7 12.4 158 1012-1175 672-864 (1560)
374 PTZ00265 multidrug resistance 99.3 1.7E-11 3.7E-16 167.0 15.0 77 1088-1168 578-655 (1466)
375 KOG0061 Transporter, ABC super 99.3 7.4E-12 1.6E-16 157.1 10.6 160 1012-1176 42-255 (613)
376 TIGR02857 CydD thiol reductant 99.3 1.9E-11 4.2E-16 152.4 12.9 141 1013-1158 335-524 (529)
377 TIGR01271 CFTR_protein cystic 99.2 1E-11 2.3E-16 170.1 10.3 157 1013-1175 439-630 (1490)
378 COG1132 MdlB ABC-type multidru 99.2 3.2E-11 6.9E-16 151.7 13.5 156 1012-1175 341-546 (567)
379 KOG0927 Predicted transporter 99.2 1.9E-11 4.1E-16 143.7 9.8 150 1012-1169 87-296 (614)
380 COG4618 ArpD ABC-type protease 99.2 2.9E-11 6.3E-16 141.3 11.2 156 1012-1174 348-553 (580)
381 COG4138 BtuD ABC-type cobalami 99.2 5E-12 1.1E-16 128.9 4.3 151 1019-1175 18-215 (248)
382 COG4136 ABC-type uncharacteriz 99.2 3E-11 6.5E-16 120.5 8.7 140 1013-1154 15-199 (213)
383 TIGR00957 MRP_assoc_pro multi 99.2 1.4E-10 3.1E-15 159.6 18.4 159 1013-1175 651-844 (1522)
384 KOG0055 Multidrug/pheromone ex 99.2 5.3E-11 1.2E-15 152.7 12.9 156 1012-1175 365-570 (1228)
385 TIGR02868 CydC thiol reductant 99.2 7E-11 1.5E-15 147.4 12.2 134 1013-1150 348-529 (529)
386 PLN03130 ABC transporter C fam 99.2 1.3E-10 2.9E-15 159.8 14.4 157 1013-1176 1252-1456(1622)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.2 1.3E-10 2.9E-15 126.2 11.5 137 1028-1168 22-191 (198)
388 PF05190 MutS_IV: MutS family 99.2 3.5E-10 7.6E-15 107.2 12.9 92 837-928 1-92 (92)
389 TIGR01271 CFTR_protein cystic 99.2 1.9E-10 4E-15 158.0 15.2 156 1013-1175 1232-1434(1490)
390 cd03240 ABC_Rad50 The catalyti 99.2 1.1E-10 2.3E-15 127.6 10.2 73 1084-1158 110-190 (204)
391 PLN03232 ABC transporter C fam 99.2 1.6E-10 3.4E-15 159.0 14.1 156 1013-1175 1249-1452(1495)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.1 1.4E-10 2.9E-15 127.5 10.8 74 1088-1167 126-204 (212)
393 PF00005 ABC_tran: ABC transpo 99.1 6.3E-11 1.4E-15 120.5 7.4 100 1016-1116 1-136 (137)
394 PLN03130 ABC transporter C fam 99.1 2.1E-10 4.6E-15 157.9 14.3 157 1013-1175 630-822 (1622)
395 PLN03232 ABC transporter C fam 99.1 1.8E-10 3.9E-15 158.3 13.4 157 1013-1175 630-822 (1495)
396 PTZ00265 multidrug resistance 99.1 2.4E-10 5.2E-15 155.9 13.5 158 1013-1175 1181-1446(1466)
397 COG4778 PhnL ABC-type phosphon 99.1 2.9E-10 6.2E-15 115.9 9.4 143 1013-1158 24-220 (235)
398 TIGR00957 MRP_assoc_pro multi 99.1 3E-10 6.6E-15 156.4 12.9 156 1013-1175 1299-1502(1522)
399 KOG0056 Heavy metal exporter H 99.1 2.8E-10 6E-15 131.4 10.0 157 1011-1175 549-755 (790)
400 PTZ00243 ABC transporter; Prov 99.1 4.7E-10 1E-14 154.2 14.2 156 1013-1175 1323-1527(1560)
401 COG1245 Predicted ATPase, RNas 99.1 3.9E-10 8.5E-15 130.1 11.0 137 1025-1164 365-528 (591)
402 cd03275 ABC_SMC1_euk Eukaryoti 99.1 4.6E-10 9.9E-15 126.4 11.3 76 1088-1168 154-234 (247)
403 PF09465 LBR_tudor: Lamin-B re 99.1 1.6E-10 3.4E-15 95.9 5.3 48 105-154 7-54 (55)
404 COG4167 SapF ABC-type antimicr 99.1 9.6E-10 2.1E-14 113.2 11.7 157 1015-1175 28-233 (267)
405 KOG0058 Peptide exporter, ABC 99.1 6.1E-10 1.3E-14 136.1 12.2 155 1012-1175 480-685 (716)
406 KOG0062 ATPase component of AB 99.1 2.6E-10 5.6E-15 133.6 8.5 219 930-1169 301-556 (582)
407 cd03272 ABC_SMC3_euk Eukaryoti 99.1 7.1E-10 1.5E-14 124.3 11.8 76 1086-1167 155-235 (243)
408 cd03277 ABC_SMC5_euk Eukaryoti 99.0 6.3E-10 1.4E-14 122.3 9.7 81 1087-1168 124-210 (213)
409 cd03239 ABC_SMC_head The struc 99.0 1.5E-09 3.2E-14 116.1 11.0 123 1029-1158 24-165 (178)
410 cd03273 ABC_SMC2_euk Eukaryoti 99.0 2.6E-09 5.6E-14 120.5 13.5 74 1087-1166 164-242 (251)
411 COG2401 ABC-type ATPase fused 99.0 2.6E-09 5.6E-14 121.9 11.8 153 1013-1168 396-585 (593)
412 TIGR00630 uvra excinuclease AB 99.0 2.9E-09 6.2E-14 138.0 13.7 87 1083-1174 822-918 (924)
413 KOG0066 eIF2-interacting prote 99.0 1.5E-09 3.3E-14 123.6 9.7 138 1012-1156 599-767 (807)
414 PRK00349 uvrA excinuclease ABC 99.0 3.7E-09 8.1E-14 137.2 14.3 87 1083-1174 824-920 (943)
415 PRK00635 excinuclease ABC subu 98.9 3.3E-09 7.1E-14 143.2 13.3 93 1077-1174 796-899 (1809)
416 COG4178 ABC-type uncharacteriz 98.9 1.4E-08 3.1E-13 124.0 17.0 142 1012-1158 405-582 (604)
417 COG4615 PvdE ABC-type sideroph 98.9 1.6E-08 3.6E-13 115.0 14.5 169 992-1172 321-528 (546)
418 COG4170 SapD ABC-type antimicr 98.8 7.5E-09 1.6E-13 108.6 8.1 171 1000-1174 7-241 (330)
419 COG1245 Predicted ATPase, RNas 98.8 1.2E-08 2.5E-13 118.2 9.9 133 1025-1162 98-285 (591)
420 KOG2355 Predicted ABC-type tra 98.8 1.9E-08 4E-13 105.7 10.1 167 993-1172 13-228 (291)
421 KOG0055 Multidrug/pheromone ex 98.8 2.4E-08 5.2E-13 128.9 13.1 155 1012-1176 1002-1208(1228)
422 KOG0054 Multidrug resistance-a 98.7 1E-07 2.2E-12 125.9 16.7 178 990-1177 515-727 (1381)
423 COG1129 MglA ABC-type sugar tr 98.7 5.7E-08 1.2E-12 116.7 12.8 154 1015-1173 274-482 (500)
424 KOG0064 Peroxisomal long-chain 98.7 1E-07 2.3E-12 111.8 13.2 138 1012-1156 494-675 (728)
425 KOG0060 Long-chain acyl-CoA tr 98.7 3.7E-07 8.1E-12 108.9 17.9 153 992-1155 432-632 (659)
426 KOG0066 eIF2-interacting prote 98.7 6E-09 1.3E-13 118.8 2.7 58 1096-1158 420-477 (807)
427 KOG0065 Pleiotropic drug resis 98.6 2.7E-08 5.8E-13 128.4 6.7 160 1011-1175 802-1015(1391)
428 COG5265 ATM1 ABC-type transpor 98.6 3.3E-07 7.1E-12 105.9 11.8 152 1012-1175 275-480 (497)
429 COG3910 Predicted ATPase [Gene 98.5 5E-07 1.1E-11 94.2 10.4 54 1098-1153 138-191 (233)
430 cd03241 ABC_RecN RecN ATPase i 98.5 3.5E-07 7.6E-12 104.8 9.5 70 1093-1168 175-248 (276)
431 KOG0054 Multidrug resistance-a 98.5 5.5E-07 1.2E-11 119.2 11.9 156 1013-1175 1153-1356(1381)
432 TIGR02858 spore_III_AA stage I 98.4 4.3E-07 9.3E-12 103.1 8.4 105 1028-1153 112-232 (270)
433 PRK00635 excinuclease ABC subu 98.3 3.2E-06 7E-11 115.0 12.7 69 1087-1158 1697-1769(1809)
434 COG0178 UvrA Excinuclease ATPa 98.2 6.2E-06 1.4E-10 102.1 12.2 67 1087-1155 820-890 (935)
435 PF02463 SMC_N: RecF/RecN/SMC 98.1 1.3E-05 2.8E-10 88.5 10.9 52 1103-1157 155-206 (220)
436 PRK08533 flagellar accessory p 98.1 2.8E-05 6.1E-10 86.7 12.7 125 1025-1152 22-164 (230)
437 KOG4675 Uncharacterized conser 98.0 1.9E-06 4.2E-11 94.4 2.4 61 98-158 153-221 (273)
438 PRK13695 putative NTPase; Prov 98.0 1.2E-05 2.6E-10 85.6 8.4 47 1102-1152 92-138 (174)
439 cd03242 ABC_RecF RecF is a rec 98.0 2.4E-05 5.1E-10 89.5 10.4 60 1104-1169 208-268 (270)
440 cd01124 KaiC KaiC is a circadi 98.0 2.5E-05 5.5E-10 83.6 10.1 121 1030-1152 2-142 (187)
441 KOG0063 RNAse L inhibitor, ABC 98.0 1.5E-05 3.3E-10 92.1 8.2 134 1027-1164 367-529 (592)
442 cd01120 RecA-like_NTPases RecA 97.9 2.4E-05 5.1E-10 81.1 8.4 123 1029-1153 1-140 (165)
443 PRK06067 flagellar accessory p 97.9 9.6E-05 2.1E-09 82.6 12.8 125 1025-1152 23-167 (234)
444 TIGR00630 uvra excinuclease AB 97.9 3.5E-05 7.6E-10 100.7 9.7 97 1074-1175 471-577 (924)
445 KOG0065 Pleiotropic drug resis 97.9 1.5E-05 3.2E-10 103.8 6.1 157 1014-1176 129-346 (1391)
446 PF13304 AAA_21: AAA domain; P 97.8 3.5E-05 7.6E-10 85.1 7.7 48 1104-1153 254-302 (303)
447 PRK00349 uvrA excinuclease ABC 97.8 4.9E-05 1.1E-09 99.5 9.4 98 1073-1175 472-579 (943)
448 smart00382 AAA ATPases associa 97.8 0.00015 3.3E-09 72.2 10.9 118 1027-1149 2-125 (148)
449 PRK07721 fliI flagellum-specif 97.7 0.00081 1.8E-08 81.5 17.7 153 1012-1175 145-337 (438)
450 cd01131 PilT Pilus retraction 97.7 0.00013 2.8E-09 79.6 8.6 110 1029-1154 3-113 (198)
451 TIGR02788 VirB11 P-type DNA tr 97.6 4.9E-05 1.1E-09 88.6 4.2 126 1025-1168 142-268 (308)
452 COG3845 ABC-type uncharacteriz 97.5 0.00032 6.9E-09 83.6 10.3 173 991-1174 255-485 (501)
453 cd00009 AAA The AAA+ (ATPases 97.5 0.00058 1.2E-08 68.7 9.6 110 1026-1151 18-131 (151)
454 cd00820 PEPCK_HprK Phosphoenol 97.4 9E-05 2E-09 72.2 2.7 35 1013-1048 2-36 (107)
455 PRK09183 transposase/IS protei 97.4 0.00057 1.2E-08 77.7 9.5 111 1018-1150 95-206 (259)
456 cd01130 VirB11-like_ATPase Typ 97.3 0.00024 5.1E-09 76.7 4.8 27 1025-1051 23-49 (186)
457 PRK14722 flhF flagellar biosyn 97.3 0.00051 1.1E-08 81.4 7.6 87 1025-1118 135-227 (374)
458 PRK06995 flhF flagellar biosyn 97.2 0.00068 1.5E-08 82.7 7.7 86 1026-1118 255-346 (484)
459 PF13555 AAA_29: P-loop contai 97.2 0.00027 5.8E-09 61.9 3.1 34 1017-1052 15-48 (62)
460 TIGR00634 recN DNA repair prot 97.2 0.0022 4.7E-08 81.0 12.4 110 1092-1217 444-560 (563)
461 PRK14721 flhF flagellar biosyn 97.2 0.00066 1.4E-08 81.6 7.1 90 1026-1124 190-285 (420)
462 PF00004 AAA: ATPase family as 97.1 0.0017 3.7E-08 64.9 8.7 105 1030-1153 1-115 (132)
463 TIGR01420 pilT_fam pilus retra 97.1 0.00097 2.1E-08 78.9 7.6 112 1026-1153 121-233 (343)
464 PRK14723 flhF flagellar biosyn 97.1 0.0031 6.7E-08 80.5 12.1 95 1016-1119 175-276 (767)
465 PF13481 AAA_25: AAA domain; P 97.1 0.0027 5.9E-08 68.4 10.1 124 1026-1149 31-188 (193)
466 KOG0219 Mismatch repair ATPase 97.0 9.9E-05 2.1E-09 91.1 -1.5 289 913-1224 544-840 (902)
467 KOG0063 RNAse L inhibitor, ABC 97.0 0.0018 3.8E-08 75.7 8.5 62 1092-1158 217-281 (592)
468 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0031 6.8E-08 70.3 10.1 127 1025-1151 17-171 (235)
469 cd01125 repA Hexameric Replica 97.0 0.0024 5.3E-08 71.7 9.2 46 1104-1151 109-160 (239)
470 smart00333 TUDOR Tudor domain. 97.0 0.00074 1.6E-08 58.1 3.9 43 105-149 4-47 (57)
471 PRK04296 thymidine kinase; Pro 97.0 0.0042 9E-08 67.4 10.6 143 1027-1189 2-158 (190)
472 PRK06921 hypothetical protein; 96.9 0.0037 8.1E-08 71.3 10.3 101 1027-1150 117-225 (266)
473 PF13401 AAA_22: AAA domain; P 96.9 0.0023 4.9E-08 64.3 7.4 114 1026-1149 3-125 (131)
474 PRK06526 transposase; Provisio 96.9 0.0035 7.6E-08 71.0 9.6 104 1027-1150 98-201 (254)
475 PRK06893 DNA replication initi 96.9 0.0028 6.1E-08 70.7 8.7 94 1028-1150 40-134 (229)
476 cd01122 GP4d_helicase GP4d_hel 96.9 0.0033 7.1E-08 71.8 9.4 37 1014-1051 18-54 (271)
477 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0095 2.1E-07 66.3 12.8 25 1025-1049 18-42 (229)
478 PRK10869 recombination and rep 96.9 0.006 1.3E-07 76.6 12.3 111 1092-1218 434-551 (553)
479 PRK06731 flhF flagellar biosyn 96.8 0.0081 1.7E-07 68.6 11.8 90 1026-1119 74-167 (270)
480 cd01393 recA_like RecA is a b 96.8 0.0056 1.2E-07 67.9 10.2 127 1025-1152 17-171 (226)
481 PRK11889 flhF flagellar biosyn 96.8 0.0081 1.8E-07 71.1 11.4 90 1027-1122 241-336 (436)
482 cd04508 TUDOR Tudor domains ar 96.8 0.0015 3.3E-08 54.0 4.0 42 107-149 1-43 (48)
483 TIGR00416 sms DNA repair prote 96.8 0.0072 1.6E-07 74.1 11.5 119 1025-1151 92-223 (454)
484 PRK07952 DNA replication prote 96.7 0.0053 1.2E-07 69.0 9.3 106 1028-1150 100-205 (244)
485 PRK05703 flhF flagellar biosyn 96.7 0.0044 9.6E-08 75.3 9.0 86 1027-1119 221-312 (424)
486 cd01121 Sms Sms (bacterial rad 96.7 0.0059 1.3E-07 72.9 9.9 120 1025-1150 80-210 (372)
487 smart00743 Agenet Tudor-like d 96.7 0.002 4.3E-08 56.4 4.3 36 105-141 4-39 (61)
488 TIGR03015 pepcterm_ATPase puta 96.7 0.0041 8.8E-08 70.8 8.0 35 1015-1049 31-65 (269)
489 PRK12727 flagellar biosynthesi 96.7 0.0072 1.6E-07 74.1 10.3 89 1026-1118 349-440 (559)
490 PRK08181 transposase; Validate 96.7 0.0074 1.6E-07 68.9 9.8 105 1026-1150 105-209 (269)
491 PRK06793 fliI flagellum-specif 96.6 0.003 6.5E-08 76.2 6.8 133 1020-1158 150-294 (432)
492 TIGR02237 recomb_radB DNA repa 96.6 0.013 2.9E-07 64.1 11.2 123 1025-1150 10-150 (209)
493 TIGR03499 FlhF flagellar biosy 96.6 0.004 8.6E-08 71.8 7.3 84 1026-1116 193-282 (282)
494 PTZ00454 26S protease regulato 96.6 0.011 2.3E-07 71.4 11.1 23 1027-1049 179-201 (398)
495 PLN03210 Resistant to P. syrin 96.6 0.0042 9E-08 85.0 8.6 26 1025-1050 205-230 (1153)
496 PF13173 AAA_14: AAA domain 96.6 0.0082 1.8E-07 60.6 8.6 99 1027-1153 2-102 (128)
497 TIGR03238 dnd_assoc_3 dnd syst 96.6 0.0011 2.4E-08 79.9 2.4 32 1013-1045 19-50 (504)
498 PRK09361 radB DNA repair and r 96.6 0.01 2.2E-07 65.9 10.0 124 1025-1150 21-162 (225)
499 TIGR00618 sbcc exonuclease Sbc 96.5 0.0044 9.5E-08 83.9 8.2 79 1085-1167 946-1035(1042)
500 PRK13764 ATPase; Provisional 96.5 0.0097 2.1E-07 74.6 10.4 119 1027-1170 257-392 (602)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-174 Score=1556.77 Aligned_cols=1055 Identities=44% Similarity=0.708 Sum_probs=879.0
Q ss_pred cccccccccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccCCchhhhccCcceEEEEecchhh--hhhccccccccc
Q 000778 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSL--LKRLRRDSFKKV 175 (1288)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~~~~~~~~~~--~~~~~~~~~~~~ 175 (1288)
.-.++++.+| .||.+.|..++.+..+ |-++...-+..-+|+-+|......+ ..|++. ..+
T Consensus 8 ~~t~~~e~~~-----------~~~~~~v~~~~~~e~k----~l~~~t~k~~~~~e~~~~~~~~~r~~~~~rv~~---~e~ 69 (1125)
T KOG0217|consen 8 HMTFFEETPG-----------KLYRNSVGLKPKEEPK----SLRNGTLKIKNLKEKEEFKSGQPREVVSSRVKE---YEA 69 (1125)
T ss_pred ceeecccCcc-----------hhcccccccCCccchh----hhcCCCcCcCccchhhHhhccCccccccccccc---hhh
Confidence 4456777777 7999999998877766 6555554444445666666311111 111111 222
Q ss_pred ccCChhhhhccc-CccCCCCCCCcchhhc-ccCCC-CCCCcchh-------hchhhhhhh--------ccccCCccccCC
Q 000778 176 VVEDDEEMENVE-DEISDDRSDSSDDDWN-KNVGK-EDVSEDEE-------VDLVDEQEN--------KVLRGRKRKSSG 237 (1288)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~~~~~e~-------~~~~~e~e~--------~~~~~~~~~~~~ 237 (1288)
+..+.+...+.. .-.-++.+++||+||+ |.+.+ +++++++| ++..+|+.. +.+++|.+++..
T Consensus 70 ~~~d~~~~~~~~~~~~k~~~~sDsd~d~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~ 149 (1125)
T KOG0217|consen 70 VGDDADIVVESSSEKPKSGLDSDSDEDFGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAES 149 (1125)
T ss_pred cCCCccceeeecccCCccccCCCcccccCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhccc
Confidence 222222222222 2233445777888886 22222 22222111 111111111 234566666644
Q ss_pred ccCCC-----CCCCCCCCCccccccCCcccc-CC-CCCCCCC-CCCccccccccccccccccccccCC-CCCccCCCCCC
Q 000778 238 VKKSK-----SDGNAVNADFKSPIIKPVKIF-GS-DKLSNGF-DNPVMGDVSERFSAREADKFHFLGP-DRRDAKRRRPG 308 (1288)
Q Consensus 238 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~ 308 (1288)
..|++ +...+...+.......|.+-. +. ++.+.+. ....-++..+|+..+.++++.||.+ ++||+++|||+
T Consensus 150 v~k~~~kk~~~~~~~~~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~ 229 (1125)
T KOG0217|consen 150 VSKGKSKKSPSDSGAVSMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRG 229 (1125)
T ss_pred ccccccCCCCCCccccccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCC
Confidence 22222 223344455555556666621 22 2222222 2223344467788888888777775 57999999999
Q ss_pred CCCCCCCCCCCCcccccCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCCCCcCCcCcccHh
Q 000778 309 DVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFS 388 (1288)
Q Consensus 309 ~p~ydp~Tl~ip~~~~~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g~~~~~GfPe~sl~ 388 (1288)
||+|||+||||||++|++|||+++|||+||++|||||||||+|||||||++||.+++++|+|+||++++|||||||++|+
T Consensus 230 dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~ 309 (1125)
T KOG0217|consen 230 DPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFD 309 (1125)
T ss_pred CCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCC
Q 000778 389 MNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQ 468 (1288)
Q Consensus 389 ~y~~kLV~~GyKVavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~ 468 (1288)
.|+.+|+++|||||+|||+||+.++++|++.+|+++|||+||||+|+|+||++|..++. ++.+.|||||+|+..+. .
T Consensus 310 ~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~-~~~akylmai~e~~~~~--~ 386 (1125)
T KOG0217|consen 310 YWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT-SDLAKYLMAIKESEESY--S 386 (1125)
T ss_pred hHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc-cHHHHHHHHHhhcCCCC--C
Confidence 99999999999999999999999999999999999999999999999999999977664 45677999999977542 1
Q ss_pred CCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 000778 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (1288)
Q Consensus 469 ~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 548 (1288)
.+...+|+|++|++||+|+++||+||..++.|.|+|+|++|+|+|.+.+.++..|...++....++.+..++|..+||++
T Consensus 387 ~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwds 466 (1125)
T KOG0217|consen 387 TGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDS 466 (1125)
T ss_pred cCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcch
Confidence 45688999999999999999999999999999999999999999999999998887777666666667777888899999
Q ss_pred hhhHHHH--HHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcc
Q 000778 549 ETTVLEI--KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626 (1288)
Q Consensus 549 ~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~ 626 (1288)
+++..++ ..||... +...+|.++. ....++.++++|+|++++||+.+++++.+++
T Consensus 467 ek~~~eii~~dy~~~~--------------------g~e~~~sil~---~p~~~~~la~safg~~~~Ylk~~~id~~lls 523 (1125)
T KOG0217|consen 467 EKTGREIISEDYFESL--------------------GLEDSPSILK---SPNTDKELALSAFGGLFYYLKKLLIDEELLS 523 (1125)
T ss_pred hhHHHHHhhhhhhhcc--------------------cccCchhhcc---CCCccchhhHHHHHHHHHHHHHHhhHHHHhh
Confidence 9988754 2343310 1223333332 2233578999999999999999999999999
Q ss_pred cccceecCCCCCccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHH
Q 000778 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (1288)
Q Consensus 627 ~~~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~Rl 706 (1288)
+.+|+.|+... ...|+||++||+|||||.|.++|+.+||||.++|+|.||||||||+.|+++||+|.+.|++||
T Consensus 524 m~n~~ey~~~~------~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~ 597 (1125)
T KOG0217|consen 524 MKNFEEYDSLD------QSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQ 597 (1125)
T ss_pred hhhhhhcchhc------ccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHH
Confidence 99999886432 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000778 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (1288)
Q Consensus 707 daVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~ 786 (1288)
|||+.|.. ++..+.++...|+++||+||+|.|+|..+.+ .++++.+|+.+|.+|+.+...+..+.
T Consensus 598 dav~~l~~-~~~~~~~~~e~l~klPDlERlL~Rih~~~~~--------------~~k~i~~f~rvLegfk~~~~~~~~~~ 662 (1125)
T KOG0217|consen 598 DAVDSLGK-APMDRTKVGETLKKLPDLERLLVRIHNGGEK--------------NKKKIADFIRVLEGFKEINKLLGSLI 662 (1125)
T ss_pred HHHHHHhc-CchhHHHHHHHHhhCCcHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 5666778999999999999999999975432 35789999999999999888877765
Q ss_pred HHHhhcc-hhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 787 AILENTE-SRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865 (1288)
Q Consensus 787 ~~l~~~~-s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~ 865 (1288)
..+.... ...+..++ ..+|++..-+..+..+|||+.+.++|.|.|..|++.+||.+...+.++++.|..+|.++++
T Consensus 663 ~v~~~~~~~~~is~~~---~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk 739 (1125)
T KOG0217|consen 663 NVLKEGEGLRLISELL---ESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRK 739 (1125)
T ss_pred HHHHhhHHHHHHHHHh---cCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5443221 22233322 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 866 LLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFC 945 (1288)
Q Consensus 866 ~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~ 945 (1288)
.+++.++.|++++++.|+++||.+.....|.+|...++++|..||+||++.++...+.+++++.......+.++++.+|.
T Consensus 740 ~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~ 819 (1125)
T KOG0217|consen 740 RLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFD 819 (1125)
T ss_pred hcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988777888999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCC
Q 000778 946 EHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHG 1025 (1288)
Q Consensus 946 ~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~ 1025 (1288)
+|+..|++++.++|.||||+|+|.+|..+++++|||+|+.... ..+.+.++.+||||+.... .++.|||||+.++...
T Consensus 820 ~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d-t~~~l~~~~~~Hpcfsl~s-~~~~fipN~v~~g~~~ 897 (1125)
T KOG0217|consen 820 EHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD-TPGFLIVKGLRHPCFSLPS-TGTSFIPNDVELGGAE 897 (1125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC-CCceeEEecccCceeecCc-CCCccccchhhccccc
Confidence 9999999999999999999999999999999999999987532 3348999999999998643 3468999999999645
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~ 1105 (1288)
...+.++|||||+|||||||++|.+++|||+||+|||..+.++++|+||+|+|+.|+++.+.|||+.|+.+++.||..++
T Consensus 898 e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT 977 (1125)
T KOG0217|consen 898 ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHAT 977 (1125)
T ss_pred cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcC
Confidence 66677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEee
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLY 1185 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~y 1185 (1288)
+.||||+||+||||++.||.+||.++|++|....+|..+|+||||.++..+..+|.|.++||++++.... +++|+|
T Consensus 978 ~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~----~vtFLY 1053 (1125)
T KOG0217|consen 978 RHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEI----DVTFLY 1053 (1125)
T ss_pred ccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCc----cEEEee
Confidence 9999999999999999999999999999999988999999999999999999999999999999997642 799999
Q ss_pred EecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 000778 1186 RLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYG 1226 (1288)
Q Consensus 1186 kl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~ 1226 (1288)
++.+|+|++|||+++|++||+|..||++|..++.+|+....
T Consensus 1054 kl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~ 1094 (1125)
T KOG0217|consen 1054 KLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSA 1094 (1125)
T ss_pred hhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 2
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=3.9e-138 Score=1323.10 Aligned_cols=840 Identities=33% Similarity=0.470 Sum_probs=688.4
Q ss_pred ccCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCC------CCcCCcCcccHhHHHHHHHHc
Q 000778 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE------QPHCGFPERNFSMNVEKLARK 397 (1288)
Q Consensus 324 ~~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g~------~~~~GfPe~sl~~y~~kLV~~ 397 (1288)
.+++||||||||+||++|||+|||||||||||+|++||+++|++|||++|+++ .||||||+|+++.|+++||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 35799999999999999999999999999999999999999999999999753 499999999999999999999
Q ss_pred CCeEEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEE
Q 000778 398 GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1288)
Q Consensus 398 GyKVavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGva 477 (1288)
|||||||||+|||..+ .++|+|+||+||||||+++++++.. ..++||+||.+.. ..||+|
T Consensus 85 GyKVaI~EQ~e~~~~~----------k~~v~R~v~~i~TpGT~~~~~~l~~-~~~~yl~ai~~~~---------~~~Gia 144 (854)
T PRK05399 85 GYKVAICEQVEDPATA----------KGPVKREVVRIVTPGTVTDEALLDE-KQNNYLAAIAQDG---------GGYGLA 144 (854)
T ss_pred CCEEEEEEecCChhhc----------CCccceEEEEEECCCeeecccccCC-CCCcEEEEEEECC---------CeEEEE
Confidence 9999999999998642 2599999999999999999988764 4688999998742 469999
Q ss_pred EEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHH
Q 000778 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKN 557 (1288)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 557 (1288)
|+|++||+|++++| .+++|++.|.+++|+|||++.+..+.. +... ..... ..+...| +.+.+.+.+.+
T Consensus 145 ~~D~stg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~----~~~~--~~~~~-~~~~~~f-~~~~~~~~l~~ 212 (854)
T PRK05399 145 YLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDE----LLLL--RRGLR-RRPPWEF-DLDTAEKRLLE 212 (854)
T ss_pred EEECCCCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh----Hhhc--cccce-ecccccc-ChHHHHHHHHH
Confidence 99999999999999 367899999999999999998754332 1111 11111 1122223 66666677777
Q ss_pred HHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCCC
Q 000778 558 IYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSG 637 (1288)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~ 637 (1288)
+|...+ + ..+ .. ....+++|+|+++.||+.+... .+.++..+..
T Consensus 213 ~f~~~~---~-----------------~~~--------~~--~~~~~~~a~~all~Yl~~~~~~-~~~~~~~~~~----- 256 (854)
T PRK05399 213 QFGVAS---L-----------------DGF--------GV--DLPLAIRAAGALLQYLKETQKR-SLPHLRSPKR----- 256 (854)
T ss_pred HhCcCC---c-----------------ccc--------CC--CCHHHHHHHHHHHHHHHHhchh-hhhccCCCEE-----
Confidence 664211 0 001 00 2357899999999999987653 2333333333
Q ss_pred CccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCc
Q 000778 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQ 717 (1288)
Q Consensus 638 ~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~ 717 (1288)
....++|.||++|++|||||.|.. |+.+||||++||||+|+||+|+||+||++||+|++.|++|||+|++|.+ +.
T Consensus 257 ---~~~~~~m~lD~~tl~~Lei~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~-~~ 331 (854)
T PRK05399 257 ---YEESDYLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLE-DP 331 (854)
T ss_pred ---ECCCCEEEcCHHHHHhccCCccCC-CCCCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh-CH
Confidence 345679999999999999999875 5567899999999999999999999999999999999999999999995 66
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhH
Q 000778 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797 (1288)
Q Consensus 718 ~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l 797 (1288)
..+..++..|+++||++|+++|+..+. . ..+++..+..+|..+..+.+ .+....+..+
T Consensus 332 ~~~~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~~~~~~~l 389 (854)
T PRK05399 332 LLREDLRELLKGVYDLERLLSRIALGR-A--------------NPRDLAALRDSLEALPELKE-------LLAELDSPLL 389 (854)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHH
Confidence 778899999999999999999996421 1 12345555555544433322 2222334455
Q ss_pred HhhhcCCCCchhHHHHHHHHHhhhchHhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Q 000778 798 HHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875 (1288)
Q Consensus 798 ~~l~~~~~~~~~l~~~l~~~~~~~d~~~~--~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~ 875 (1288)
..+.. .++.+.++++.+..+||.... ..++.+ +++|++++||.+++.++++++++.++.++.++.++.+++++.
T Consensus 390 ~~l~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 465 (854)
T PRK05399 390 AELAE---QLDPLEELADLLERAIVEEPPLLIRDGGV-IADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVG 465 (854)
T ss_pred HHHHh---hcccHHHHHHHHHHHHccCCchhcccCCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 55543 245677777888888875321 123444 489999999999999999999999999888888888878887
Q ss_pred EeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000778 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955 (1288)
Q Consensus 876 ~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~ 955 (1288)
..+..+|+|+||......+|++|+..+++++..||+||+++++++++.++++++...+.+++.+++..+.++...|..++
T Consensus 466 ~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~ 545 (854)
T PRK05399 466 YNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLA 545 (854)
T ss_pred EcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEec
Q 000778 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035 (1288)
Q Consensus 956 ~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGp 1035 (1288)
+++++|||++|||.+|.. .+||||+|.+. +.|.|++||||+++.. +..+.|||||+.|+. .+++++||||
T Consensus 546 ~~la~lD~l~s~A~~a~~--~~~~~P~~~~~-----~~l~i~~~rHP~le~~-~~~~~~vpnd~~l~~--~~~~~iiTGp 615 (854)
T PRK05399 546 KALAELDVLASLAEVAEE--NNYVRPEFTDD-----PGIDIEEGRHPVVEQV-LGGEPFVPNDCDLDE--ERRLLLITGP 615 (854)
T ss_pred HHHHHHHHHHHHHHHHHH--CCccccEEeCC-----CCEEEEeccCcEEecc-cCCCceEecceeeCC--CCcEEEEECC
Confidence 999999999999999975 47999999853 4699999999999852 235679999999983 5789999999
Q ss_pred CCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1036 NgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
||||||||||++|++++|||+||||||..+.++++|+||+|+|+.|++..|.|||++||.+++.|+..+++++|||||||
T Consensus 616 N~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~ 695 (854)
T PRK05399 616 NMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEI 695 (854)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCc
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKS 1195 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s 1195 (1288)
||||++.||.+++++++++|.+..+|++||+|||++++.....+++|.++||++... .++++|+|+|.+|+|++|
T Consensus 696 GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~-----~~~l~flYkl~~G~~~~S 770 (854)
T PRK05399 696 GRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEH-----GGDIVFLHKVVPGAADKS 770 (854)
T ss_pred CCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEe-----CCeEEEEEEeCcCCCCCc
Confidence 999999999999999999998876799999999999998877788999999998743 258999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHhhccccccCccchhhHHHH
Q 000778 1196 YGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQKSSEGDGVTCLTE 1275 (1288)
Q Consensus 1196 ~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 1275 (1288)
||++||++||+|++||+||++++.++|+............... ....+ ....++.+++..+......+.+.++.|.+
T Consensus 771 yGi~VA~laGlP~~VI~rA~~i~~~le~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~tp~~a~~~l~~ 847 (854)
T PRK05399 771 YGIHVAKLAGLPASVIKRAREILAQLESASEKAKAASAEEDQL-SLFAE--PEESPLLEALKALDPDNLTPREALNLLYE 847 (854)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccccccccccc-ccccc--cccHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999985311000000000000 00110 01344666677776666666666666777
Q ss_pred HHHHH
Q 000778 1276 LQRQA 1280 (1288)
Q Consensus 1276 l~~~~ 1280 (1288)
|++.+
T Consensus 848 l~~~~ 852 (854)
T PRK05399 848 LKKLL 852 (854)
T ss_pred HHHHh
Confidence 76654
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=4.1e-138 Score=1314.80 Aligned_cols=776 Identities=32% Similarity=0.475 Sum_probs=653.4
Q ss_pred CCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcCCe
Q 000778 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGYR 400 (1288)
Q Consensus 327 ~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g------~~~~~GfPe~sl~~y~~kLV~~GyK 400 (1288)
+||||||||+||++|||+|||||||||||||++||.++|++|+|++|.+ ++||||||+|+++.|+++||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 6999999999999999999999999999999999999999999999975 2799999999999999999999999
Q ss_pred EEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEE
Q 000778 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480 (1288)
Q Consensus 401 VavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGva~vD 480 (1288)
||||||+|+|... +++|+||||+||||||+++++++.. .+++||+||.+.. ..||+||+|
T Consensus 81 Vai~eQ~e~~~~~----------kg~v~Rev~ri~TpGT~~~~~~l~~-~~~nyl~ai~~~~---------~~~gla~~D 140 (840)
T TIGR01070 81 VAICEQIEDPKTA----------KGPVEREVVQLITPGTVSDEALLPE-RQDNLLAAIAQES---------NGFGLATLD 140 (840)
T ss_pred EEEEEecCCchhc----------CCceeeEEEEEECCCcccccccccC-CCCceEEEEEeCC---------CeEEEEEEE
Confidence 9999999998641 2599999999999999999998864 3678999997421 259999999
Q ss_pred cCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHHHHh
Q 000778 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560 (1288)
Q Consensus 481 ~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 560 (1288)
++||+|++++|.|+ ..|.+.|.+++|+|||+|.+..+ .... + +. .| +.......+...|.
T Consensus 141 ~sTG~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~~~~-~--------~~------~f-~~~~~~~~l~~~f~ 200 (840)
T TIGR01070 141 LTTGEFKVTELADK---ETLYAELQRLNPAEVLLAEDLSE-MEAI-E--------LR------EF-RKDTAVMSLEAQFG 200 (840)
T ss_pred ccccEEEEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-HHHH-H--------hH------hc-chhHHHHHHHHhcC
Confidence 99999999999874 36899999999999999876422 2211 1 00 22 33333334444432
Q ss_pred hcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCCCCcc
Q 000778 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGD 640 (1288)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~~~~ 640 (1288)
... + ..+ . ..+...+++|+|+++.||+.+.... +.++..+..
T Consensus 201 ~~~---l------------------------~~~-~-~~~~~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~-------- 242 (840)
T TIGR01070 201 TED---L------------------------GGL-G-LRNAPLGLTAAGCLLQYAKRTQRTA-LPHLQPVRL-------- 242 (840)
T ss_pred ccc---h------------------------hhc-C-CCCCHHHHHHHHHHHHHHHHhChhh-hhhCCCcEE--------
Confidence 100 0 000 0 0123578999999999999875432 323333332
Q ss_pred CCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhH
Q 000778 641 MAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720 (1288)
Q Consensus 641 ~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~ 720 (1288)
+..+++|.||++|++|||||.|.+ |+.+||||++||+|+|+||+|+||+||++||+|++.|++|||+|++|.. +..++
T Consensus 243 ~~~~~~m~lD~~t~~~LEl~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~-~~~l~ 320 (840)
T TIGR01070 243 YELQDFMQLDAATRRNLELTENLR-GGKQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLR-HFFLR 320 (840)
T ss_pred ECCCCEEEeCHHHHHhccCCccCC-CCCCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh-CHHHH
Confidence 345679999999999999999886 4578999999999999999999999999999999999999999999986 55677
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhh
Q 000778 721 LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800 (1288)
Q Consensus 721 ~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l 800 (1288)
..++..|+++||++|+++|+..+. . ..+++..+..+|..+..+.+. +....+..+..+
T Consensus 321 ~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~l~~l 378 (840)
T TIGR01070 321 EGLRPLLKEVGDLERLAARVALGN-A--------------RPRDLARLRTSLEQLPELRAL-------LEELEGPTLQAL 378 (840)
T ss_pred HHHHHHhccCcCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHHHH
Confidence 889999999999999999996431 1 134555666665544443322 222233444444
Q ss_pred hcCCCCchhHHHHHHHHHhhhchHhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeC
Q 000778 801 LTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878 (1288)
Q Consensus 801 ~~~~~~~~~l~~~l~~~~~~~d~~~~--~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~ 878 (1288)
.. .++++.++.+.+..+|+.... ..++.+ +++|+++++|.++..+.++++++.++.++.++.++.+++++....
T Consensus 379 ~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~ 454 (840)
T TIGR01070 379 AA---QIDDFSELLELLEAALIENPPLVVRDGGL-IREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNA 454 (840)
T ss_pred HH---hcccHHHHHHHHHHHHhcCCccccccCCe-eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 32 355667777777777763211 123333 489999999999999999999999888877777777777776667
Q ss_pred CceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000778 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958 (1288)
Q Consensus 879 ~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~l 958 (1288)
..+|+|+|+.....++|++|...++.++.+||+||+++++++++.++++++..++.+++.++...+..+.+.|..+++.+
T Consensus 455 ~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 534 (840)
T TIGR01070 455 VFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL 534 (840)
T ss_pred CceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCC
Q 000778 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038 (1288)
Q Consensus 959 a~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgs 1038 (1288)
++|||++|||.+|..+ +||||+|.+. +.|.|++||||+++.. + ...|||||+.++. ..++++|||||||
T Consensus 535 a~lD~l~s~A~~a~~~--~~~~P~~~~~-----~~i~i~~~RHP~le~~-~-~~~~VpNdi~l~~--~~~~~iITGPNmg 603 (840)
T TIGR01070 535 AELDVLANLAEVAETL--HYTRPRFGDD-----PQLRIREGRHPVVEQV-L-RTPFVPNDLEMAH--NRRMLLITGPNMG 603 (840)
T ss_pred HHHHHHHHHHHHHHHC--CCcCceecCC-----CcEEEEeeECHHHHhc-c-CCCeEeeeeecCC--CccEEEEECCCCC
Confidence 9999999999999754 7999999753 4699999999999852 2 3579999999984 4689999999999
Q ss_pred ChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1039 GKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
|||||||++|++++|||+||||||..+.++++|+||+|+|+.|++..+.||||+||.+++.|+..+++++||||||+|||
T Consensus 604 GKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrG 683 (840)
T TIGR01070 604 GKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRG 683 (840)
T ss_pred CchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHH
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGV 1198 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~ 1198 (1288)
|++.||.+|+++|+++|.+..+|.+||+|||++++......+.|.++||++.... +.++|+|+|.+|.+++|||+
T Consensus 684 T~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~-----~~l~flYkl~~G~~~~Sygi 758 (840)
T TIGR01070 684 TSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHN-----GTIVFLHQVLPGPASKSYGL 758 (840)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEEC-----CcEEEEEEECCCCCCCcHHH
Confidence 9999999999999999987579999999999999988888889999999986543 47999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH
Q 000778 1199 NVARLAGIPDKVLQKAVAKSTEFEAI 1224 (1288)
Q Consensus 1199 ~vA~~aGlP~~vi~~A~~~~~~le~~ 1224 (1288)
+||+++|+|++||+||++++.++|..
T Consensus 759 ~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 759 AVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999853
No 4
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=6e-136 Score=1279.09 Aligned_cols=829 Identities=35% Similarity=0.503 Sum_probs=675.2
Q ss_pred ccCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCC-CCcCCcCcccHhHHHHHHHHcCCeEE
Q 000778 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE-QPHCGFPERNFSMNVEKLARKGYRVL 402 (1288)
Q Consensus 324 ~~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~g~-~~~~GfPe~sl~~y~~kLV~~GyKVa 402 (1288)
++++||||||||+||++|+|++|||+||+|||+|++||.++|++|+|++|+++ +||||||+|+++.|+++||++|||||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~~pm~gvP~h~~~~yl~~li~~g~kVA 82 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYYLAKLIELGYKVA 82 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCCCcCCCCccccHHHHHHHHHhCCCeEE
Confidence 56899999999999999999999999999999999999999999999999876 59999999999999999999999999
Q ss_pred EEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEEcC
Q 000778 403 VVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVA 482 (1288)
Q Consensus 403 vveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGva~vD~s 482 (1288)
||||+|+|..+ .++|+|+|++|+||||++|+.++... +++||+||..... . .||+||+|++
T Consensus 83 iceQ~e~~~~~----------k~~v~R~v~rv~TpGt~~d~~~l~~~-~~n~l~a~~~~~~-------~-~~gla~~dls 143 (843)
T COG0249 83 ICEQLEDPAEA----------KGVVERKVVRVVTPGTLTDEALLSDR-ENNYLAALAIDRD-------G-KVGLAFIDLS 143 (843)
T ss_pred EEEcccChhhh----------cCcceeEEEEEECCCeeecccccccc-ccceEEEEEecCC-------C-EEEEEEEEcc
Confidence 99999999752 24999999999999999999988543 6889999986431 1 7999999999
Q ss_pred CCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHHHHhhc
Q 000778 483 TSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562 (1288)
Q Consensus 483 tg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 562 (1288)
||+|++.+|. +.+|.+.|.+++|+|||++....+........ .+.....+. .+++...+...+..+|...
T Consensus 144 tGef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~~-----~~~~~~~~~-~~f~~~~~~~~l~~~~~~~ 213 (843)
T COG0249 144 TGEFFVSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQK-----GLFVVRLPA-SFFDEDDAEEILSEYFGVR 213 (843)
T ss_pred cCeEEEEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhhh-----ceeeeecch-hhcCccHHHHHHHHHhCcc
Confidence 9999999998 77899999999999999998766543221111 111112222 3445555566666666422
Q ss_pred ccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCCCCccCC
Q 000778 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMA 642 (1288)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~~~~~~ 642 (1288)
+-. ..+. .....+++|+|+++.|++..+... +.+.. .+....
T Consensus 214 ~l~---------------~~~~--------------~~~~~~~~a~~~ll~Y~~~t~~~~-l~~~~--------~~~~~~ 255 (843)
T COG0249 214 DLD---------------GFGL--------------ISTPLALSAAGALLSYLKDTQKTF-LPHIQ--------IIQRYD 255 (843)
T ss_pred ccc---------------cccc--------------ccchHHHHHHHHHHHHHHHhhhcc-ccccc--------cceeec
Confidence 110 0000 013679999999999997765432 22221 122345
Q ss_pred CCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 000778 643 KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722 (1288)
Q Consensus 643 ~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~ 722 (1288)
...+|.||.+|++||||++|.++++.+||||++||+|+|+||+|+|++||++||+|.+.|+.|||+|++|.. +..++..
T Consensus 256 ~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~-~~~l~~~ 334 (843)
T COG0249 256 LEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKD-NPELREK 334 (843)
T ss_pred cCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 677999999999999999999877889999999999999999999999999999999999999999999986 4567889
Q ss_pred HHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc-hhhHHhhh
Q 000778 723 FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE-SRQLHHIL 801 (1288)
Q Consensus 723 lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~-s~~l~~l~ 801 (1288)
||..|+++||+||+++|+..+. .+ .+++..+...|..+..+..... ... ...+..+.
T Consensus 335 L~~~L~~v~DleRl~~Rl~~~~-~~--------------~rDl~~l~~~l~~~~~i~~~l~-------~~~~~~~l~~~~ 392 (843)
T COG0249 335 LREMLKKVPDLERLLSRLSLGR-AS--------------PRDLLRLRDSLEKIPEIFKLLS-------SLKSESDLLLLL 392 (843)
T ss_pred HHHHHhcCcCHHHHHHHHHcCC-CC--------------hhhHHHHHHHHHHHHHHHHHHh-------ccccchhhhHHh
Confidence 9999999999999999996542 11 2345555555544444333221 111 11122111
Q ss_pred cCCCCchhHHHHHHHHHhhhchHhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCce
Q 000778 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL 881 (1288)
Q Consensus 802 ~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~ 881 (1288)
.....++.+.++...+..++...........+++.|++++||..+.......+++.++....+...+..+++....+..+
T Consensus 393 ~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n~v~G 472 (843)
T COG0249 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYNKVYG 472 (843)
T ss_pred hhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccce
Confidence 11112343445666666666532221111134689999999999999999999999888777777777765554455579
Q ss_pred eeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000778 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAEL 961 (1288)
Q Consensus 882 y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~L 961 (1288)
|+++|+......+|.+|+..++.++..||+||+++++..++..++.++...+.+++.++.+.+..|.+.|+.+..++|+|
T Consensus 473 y~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~l 552 (843)
T COG0249 473 YYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAEL 552 (843)
T ss_pred eEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChh
Q 000778 962 DALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041 (1288)
Q Consensus 962 D~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKS 1041 (1288)
||++|||..|. ..+||||+|++. ..|.|++||||+++.. +..+ |||||+.|+. .+++++||||||||||
T Consensus 553 D~l~slA~~a~--~~~y~rP~~~~~-----~~l~i~~gRHPvvE~~-~~~~-fVpNd~~L~~--~~~i~lITGPNM~GKS 621 (843)
T COG0249 553 DVLSSLAEIAA--EQNYVRPEFVDS-----NDLEIKEGRHPVVEAV-LDNG-FVPNDIDLSG--NRRIILITGPNMGGKS 621 (843)
T ss_pred HHHHHHHHHHh--hCCCCCceecCC-----CCEEEEecCcchhhhh-ccCC-cccCceeeCC--CceEEEEECCCCCccH
Confidence 99999999996 458999999863 2299999999999963 3333 9999999985 6799999999999999
Q ss_pred HHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1042 TlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
|||||+|++++|||+||||||+.+.++++|+||||+|+.|++..|.||||+||.+++.||..|++.|||||||.||||++
T Consensus 622 TylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT 701 (843)
T COG0249 622 TYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTST 701 (843)
T ss_pred HHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHH
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVA 1201 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA 1201 (1288)
.||.+|||++++||+++.+|.+||+||||+++......+.|.++||...... +.++|+|++.+|.+++|||++||
T Consensus 702 ~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~-----~~i~Fl~kv~~G~a~~SyGi~VA 776 (843)
T COG0249 702 YDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEG-----GDITFLYKVKPGIADKSYGIHVA 776 (843)
T ss_pred chhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEcC-----CceEEEEEeccCCCCccHHHHHH
Confidence 9999999999999998779999999999999998888789999999965544 35999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHhhccccccCcc
Q 000778 1202 RLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQKSSEG 1267 (1288)
Q Consensus 1202 ~~aGlP~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1267 (1288)
++||+|.+||+||++++.++|+... ...... .+ ......+++.+.++.+.-....+.
T Consensus 777 klaGlP~~Vi~rA~~il~~le~~~~----~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~~tp~ 833 (843)
T COG0249 777 KLAGLPEEVIERAREILAELEKESR----SSNLEL-NQ----KDLSLFPKVLKALKSLDPDELTPR 833 (843)
T ss_pred HHhCCCHHHHHHHHHHHHHHhhccc----Ccccch-hh----hhHhHHHHHHHHHHhCChhhcCHH
Confidence 9999999999999999999986432 000000 11 111112266777777766655544
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-128 Score=1114.44 Aligned_cols=850 Identities=30% Similarity=0.444 Sum_probs=667.7
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhccee-eecCCCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 000778 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1288)
Q Consensus 325 ~~~TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~-~~~g~~~~~GfPe~sl~~y~~kLV~~GyKVav 403 (1288)
+++||.+|||.|+|++|.|+||..+||+.|.+|++||+|++++|||. ++.+++..|.||.++++.|+++||++||||||
T Consensus 160 s~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVaV 239 (1070)
T KOG0218|consen 160 SKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVAV 239 (1070)
T ss_pred cccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEEE
Confidence 47999999999999999999999999999999999999999999996 57788999999999999999999999999999
Q ss_pred EeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc--ccCC----CCCCcEEEEEEecCCCCCCCCCCCEEEEE
Q 000778 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE--LLSA----NPDASYLMALTESNQSPASQSTDRCFGIC 477 (1288)
Q Consensus 404 veQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~--~l~~----~~~~~yllaI~e~~~~~~~~~~~~~iGva 477 (1288)
|+|+||++-+. ...++..+|.|+|++|||+||+.++. .+.. +..++|++||.+.......+.+...||+.
T Consensus 240 VkQtETAAiKs----~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vgli 315 (1070)
T KOG0218|consen 240 VKQTETAAIKS----HGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLI 315 (1070)
T ss_pred EeehhhHHHHh----cCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEE
Confidence 99999987642 23367889999999999999998653 1211 12467999998755433234556789999
Q ss_pred EEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhH-HHHH
Q 000778 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV-LEIK 556 (1288)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~-~~l~ 556 (1288)
-|.++||++.+.+|.|+..++.|++.|..++|.|+|++.. +|+.+...+.+.. +-.+......| +-+..+ +.+.
T Consensus 316 gVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~-ls~qt~all~~~~---Vsve~~~~rv~-r~~naV~q~ik 390 (1070)
T KOG0218|consen 316 GVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTD-LSPQTVALLFKDN---VSVELIHKRVY-RLENAVVQAIK 390 (1070)
T ss_pred EEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCC-CcHHHHHHHHhcc---cchhhhhhhhh-hchhHHHHHHH
Confidence 9999999999999999999999999999999999999854 6777777665421 11111111111 111111 1111
Q ss_pred HHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccccceecCCC
Q 000778 557 NIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCS 636 (1288)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~ 636 (1288)
-.+....+.... + .+ ..+....|+ +++.. +.-.+|.+++++.||....++. ++..++|..
T Consensus 391 la~e~~q~f~~~--k-~~----l~gs~ii~l------i~nl~--~psvic~la~~is~lkefnlE~-~l~~psf~s---- 450 (1070)
T KOG0218|consen 391 LANEKIQNFEDD--K-EM----LEGSEIICL------IMNLS--HPSVICLLAKLISHLKEFNLEQ-VLLIPSFYS---- 450 (1070)
T ss_pred HHHHHHhhhhhh--h-hh----hhhhhhhhh------hhcCC--CchHHHHHHHHHHHHHHhchHH-heecccccC----
Confidence 111110000000 0 00 000000111 22211 2335566999999999976654 444444432
Q ss_pred CCccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh--c
Q 000778 637 GFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLR--G 714 (1288)
Q Consensus 637 ~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~--~ 714 (1288)
......+|.|+++||++||||.|..+|+.+|||||+||||.|.||.|+||.|+.+||.|...|++|+|||+++. .
T Consensus 451 ---~~ss~e~Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshs 527 (1070)
T KOG0218|consen 451 ---PFSSKEHMTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHS 527 (1070)
T ss_pred ---cccccceeeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcc
Confidence 23455689999999999999999999999999999999999999999999999999999999999999999993 2
Q ss_pred CCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHhhc
Q 000778 715 VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL--GAILENT 792 (1288)
Q Consensus 715 ~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l--~~~l~~~ 792 (1288)
.+...+..+++.|.++|||.|-|+||+.+....+ ..++++ ++.+..+...++.+....... ..--...
T Consensus 528 snS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~---~eff~v-------lk~iy~a~s~fq~~~~~~~~~~~s~~~s~~ 597 (1070)
T KOG0218|consen 528 SNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPR---KEFFFV-------LKQIYSAVSHFQMHQSYLEHFKSSDGRSGK 597 (1070)
T ss_pred cchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcH---HHHHHH-------HHHHHHHHHHHHHHhhhhhhhccccccchh
Confidence 2334667899999999999999999987643211 111111 122222221111110000000 0001123
Q ss_pred chhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCc--eeeCCCCChhHHHHHHHHHHH------HHHHHHHHHHHH
Q 000778 793 ESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGR--IIPHGGVDMDYDSACKKVKEI------EASLTKHLKEQR 864 (1288)
Q Consensus 793 ~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~--ii~~~g~d~~ld~~~~~~~~i------~~~L~~~l~~~~ 864 (1288)
.|.+|+.+..... -|.+.+.+.+|-.+++..++.+... +...-.-.|.++...+....+ ...|..+|.+.+
T Consensus 598 qS~LLrrlisel~-~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiR 676 (1070)
T KOG0218|consen 598 QSPLLRRLISELN-EPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIR 676 (1070)
T ss_pred ccHHHHHHHHHhc-CccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777664311 2566667777777777655433221 111111135566554433322 235777999999
Q ss_pred HHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 865 KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQF 944 (1288)
Q Consensus 865 ~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~ 944 (1288)
++|..+++.|..+++-.|+|||+....+++|.+|+..++++...||+||+++++..+|...++.........+..++.+|
T Consensus 677 k~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~ki 756 (1070)
T KOG0218|consen 677 KYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKI 756 (1070)
T ss_pred HHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999988888888999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCC
Q 000778 945 CEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGH 1024 (1288)
Q Consensus 945 ~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~ 1024 (1288)
.+|+..|+.+...+|.||||+|||.++. +.+||||+|+++ ...|.|++||||+++. +..+.|||||+.|..
T Consensus 757 SehYtelrkat~~LatlDCi~SlA~~s~--n~nYvRPtfvd~----~~eI~ikngRhPvIe~--Ll~d~fVPNdi~ls~- 827 (1070)
T KOG0218|consen 757 SEHYTELRKATLNLATLDCILSLAATSC--NVNYVRPTFVDG----QQEIIIKNGRHPVIES--LLVDYFVPNDIMLSP- 827 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccCcccccc----hhhhhhhcCCCchHHH--HhhhccCCCcceecC-
Confidence 9999999999999999999999999997 568999999974 2468999999999985 344569999999997
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhC
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a 1104 (1288)
+.+++.+||||||||||.|+||+|++.||||+||||||+.+.++++|.||+|||+.|+|..|.|||+.||.++..|+..|
T Consensus 828 egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~ka 907 (1070)
T KOG0218|consen 828 EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKA 907 (1070)
T ss_pred CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCC-CceEEeeeEEEEec--CCCCcceE
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKD-PRVSLCHMACQVGN--GVGGVEEV 1181 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~-~~v~~~~~~~~~~~--g~~~~~~l 1181 (1288)
+..|||||||+||||++.||.||++|+|+|+.+...|.+||+|||+.+...-... +.|.++|||.+... +..+.+.+
T Consensus 908 t~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsV 987 (1070)
T KOG0218|consen 908 TKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSV 987 (1070)
T ss_pred ccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhh
Confidence 9999999999999999999999999999999998899999999999988765543 36889999998833 23457889
Q ss_pred EEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 000778 1182 TFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYG 1226 (1288)
Q Consensus 1182 ~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~ 1226 (1288)
+|+|+|+.|.|.+|||++||++|++|.+||.||-.+++++|....
T Consensus 988 tfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke~r 1032 (1070)
T KOG0218|consen 988 TFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKESR 1032 (1070)
T ss_pred hhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999997654
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-91 Score=824.49 Aligned_cols=831 Identities=28% Similarity=0.414 Sum_probs=629.2
Q ss_pred CCCHHHHHHHHHHhhC---CCeEEEEeeCceEEEecccHHHHhhhc-----ceeeecCC----CCcCCcCcccHhHHHHH
Q 000778 326 NLSEGQKQWWEFKSKH---MDKVIFFKMGKFYELFEMDAHVGAKEL-----DLQYMKGE----QPHCGFPERNFSMNVEK 393 (1288)
Q Consensus 326 ~~TP~~~QyweiK~~~---~D~VlfFkvGkFYEly~~DA~i~ak~L-----~L~~~~g~----~~~~GfPe~sl~~y~~k 393 (1288)
+-+.+++-|..+=..- -+||.||.+|+||..||+||..+|+.. -++++... ...|.+.-..|...++-
T Consensus 11 ~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~ 90 (902)
T KOG0219|consen 11 KDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRE 90 (902)
T ss_pred ccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHH
Confidence 3455666666655443 389999999999999999999999865 25544321 22344444556666655
Q ss_pred H-HHcCCeEEEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc-ccCCCCCCc---EEEEEEecCCCCCCC
Q 000778 394 L-ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE-LLSANPDAS---YLMALTESNQSPASQ 468 (1288)
Q Consensus 394 L-V~~GyKVavveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~-~l~~~~~~~---yllaI~e~~~~~~~~ 468 (1288)
| +..+|+|.+++--|+ +|+++.=-+||++.+.+ ++..+.+.. .++.+.-.. .
T Consensus 91 ~l~~~~~~Ve~y~~~~~------------------~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~~-----~ 147 (902)
T KOG0219|consen 91 LLLVLRYRVEVYSSNQG------------------DWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHPG-----V 147 (902)
T ss_pred HHHHhccceEEeecCcc------------------ceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEeec-----c
Confidence 5 479999999974321 25566666999998875 333322211 112222211 2
Q ss_pred CCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 000778 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (1288)
Q Consensus 469 ~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~~~~~~~~~~~~~f~~~ 548 (1288)
.+.+.+|+|++|++.-.+++++|.||..|++|+..|.+++|+|+|++.+....+..++..-..+..++......++|-+
T Consensus 148 ~~~~~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~- 226 (902)
T KOG0219|consen 148 DGQRRVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIIDRCGVLITLRKKSESSW- 226 (902)
T ss_pred CCCceeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhccCeEEEEecccchhH-
Confidence 3568899999999999999999999999999999999999999999954333333433222345555555555455422
Q ss_pred hhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccc
Q 000778 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1288)
Q Consensus 549 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~l~~~l~~~~ 628 (1288)
...+..+.+.+.. . .....+|+. .+..|++++.+++.||.. .++. -+.+
T Consensus 227 kdv~~~l~~~l~~--~-----------------~~~~~~~e~---------~~q~a~~~~~~~i~yl~~--~~e~-~~s~ 275 (902)
T KOG0219|consen 227 KDVEQDLNRLLKS--Q-----------------EHAAYLPEL---------ELQLAMSALSALIKYLDL--ENEY-SNSG 275 (902)
T ss_pred HHHHHHHHhcccc--h-----------------hhhccchHH---------HhHHHHHHHHHHHHHHhh--cccc-cccc
Confidence 2233333333220 0 001123332 347899999999999952 2221 2233
Q ss_pred cceecCCCCCccCCCCCceecCHHHHHhcccccccCC-CCCcccHHH-HHhhhcChHHHHHHHHHhcCCCCCHHHHHHHH
Q 000778 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS-GDSSGTLYA-QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (1288)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~-g~~~gSL~~-lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~Rl 706 (1288)
+|++. ......+|.||.+|+++|++|+...+ -....+|.. +||||+|++|.|||++|+.+||+++..|++|+
T Consensus 276 ~~ei~------~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~ 349 (902)
T KOG0219|consen 276 KYELT------NHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERH 349 (902)
T ss_pred eEEEe------ecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHh
Confidence 55543 23456799999999999999986532 233457887 99999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHH-HhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000778 707 DAVAGLRGVNQPFALEFR-KALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL 785 (1288)
Q Consensus 707 daVe~L~~~~~~~~~~lr-~~Lk~lpDlerll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l 785 (1288)
|.|+.|+. +...+..++ +.|..+||+-|+..++.. .+- .++..++.....+..+.+...+
T Consensus 350 d~v~~l~~-~~~~rq~L~~~lL~~~pdi~rl~~~l~~---~~L--------------~d~~r~yq~~~~l~~~~~~l~~- 410 (902)
T KOG0219|consen 350 DLVEALVE-DAEIRQKLRDDLLRRIPDISRLARRLMK---ANL--------------QDVNRIYQAAKLLPTVVQVLIS- 410 (902)
T ss_pred hhHHHHHh-hhHHHHHHHHHHhhcChhHHHhhhhhhh---cch--------------HHHHHHHHHHHHhHHHHHHHHh-
Confidence 99999986 455555554 578999999999999851 110 1111122211122222222111
Q ss_pred HHHHhhcchhhHHh-hhcCCCCchhHHHHHHHHHhhhchHhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 786 GAILENTESRQLHH-ILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864 (1288)
Q Consensus 786 ~~~l~~~~s~~l~~-l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~ 864 (1288)
+....+ .++.. +. .....+.+....+...+|++++.+ +.++++..+|+++.++++.+.+++..+.+..++..
T Consensus 411 --~~~~~~-~ll~~~l~---~~~~~~~kf~~~ve~t~D~da~ee-~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~ 483 (902)
T KOG0219|consen 411 --LSESHN-RLLKSPLT---EHLKKLEKFQEMVETTVDLDAEEE-NEYRVRVDFDEELQELREKLDELERKMEKLHKKVS 483 (902)
T ss_pred --hhhhhh-hhhhhhhh---hhhhhHHHHHHHHHHHhhHhHHhc-CcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11111 11 112244556666778888877765 88888999999999999999999999998887776
Q ss_pred HHhcC---CCceEEEeCCceeeeeccccccCCC--CCcEEEEeeecCcEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000778 865 KLLGD---TSITYVTIGKDLYLLEVPESLRGSV--PRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1288)
Q Consensus 865 ~~l~~---~~i~~~~~~~~~y~i~v~~~~~~~~--p~~~~~~ss~~~~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~ 939 (1288)
..++. .+++.-.....+|++.+.....+.+ .++|+..++.||+++|+|.+|..+|+++...+.++...+..+.++
T Consensus 484 ~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivre 563 (902)
T KOG0219|consen 484 ADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVRE 563 (902)
T ss_pred hhcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 2455556667788888876433333 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCccccccc
Q 000778 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1288)
Q Consensus 940 l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi 1019 (1288)
++.....|.+.+..+...+|.|||+.|||++|.....+|+||.+.+.+ ...+.++++|||+++.+ ..-.|||||+
T Consensus 564 vikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g---s~rl~l~~~rHp~lE~Q--d~~~fIpNdv 638 (902)
T KOG0219|consen 564 IIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG---SKRLELKQSRHPVLEGQ--DEIPFIPNDV 638 (902)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc---hhHHHHHhcccchhhcc--ccCCCCCCcc
Confidence 999999999999999999999999999999998778899999999864 34689999999999864 2347999999
Q ss_pred ccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHH
Q 000778 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1020 ~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.|.. .++++++||||||+||||++|+.|.+++|||+||||||+.+.++++|.|++|.|+.|++.+|.||||.||.+++.
T Consensus 639 ~le~-~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~ 717 (902)
T KOG0219|consen 639 VLEK-GKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETAS 717 (902)
T ss_pred cccc-CCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHH
Confidence 9997 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcc
Q 000778 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVE 1179 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~ 1179 (1288)
|++.+++.||||+|||||||++.||..+||+|-+|++.+.||.+||+||+|++.......+.|.++||+..+.+ +
T Consensus 718 Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~-----~ 792 (902)
T KOG0219|consen 718 ILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIEN-----D 792 (902)
T ss_pred HHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecC-----c
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999875 5
Q ss_pred eEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccchhhHHHHHHHHHHHHHhhc
Q 000778 1180 EVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHKKESEENLPADHCVDHMVVLIQSLLNFTANL 1259 (1288)
Q Consensus 1180 ~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1259 (1288)
+++.+|++.+|+|+.|||++||+++|||+.||+.|+.+++++|+.-..+..++ -....+..+.+++++..+++.+
T Consensus 793 ~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~~e~k~-----kKe~l~~~~~~~~~~~skvk~~ 867 (902)
T KOG0219|consen 793 DITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVIKESKE-----KKELLERAQVIIQEWLSKVKNV 867 (902)
T ss_pred chhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhhhhhhh-----HHHHHHHHHHHHHHHHhcchhH
Confidence 78999999999999999999999999999999999999999987543211111 1111223334666666666665
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-75 Score=679.08 Aligned_cols=698 Identities=24% Similarity=0.329 Sum_probs=539.4
Q ss_pred CcEEEEEEecCCCCCCCCCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhc
Q 000778 452 ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT 531 (1288)
Q Consensus 452 ~~yllaI~e~~~~~~~~~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~ 531 (1288)
...++||.|+++. ...+||+|.+|+.++++++++|.|+..|.++.+.|.-+.|-||+++....-....+++....
T Consensus 103 ~~v~~~v~e~r~~-----~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~~ 177 (867)
T KOG0220|consen 103 PSVIVAVVEGRGL-----ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTLI 177 (867)
T ss_pred CceEEEEEecCCc-----ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHHH
Confidence 4588999998764 46789999999999999999999999999999999999999999998765544444432211
Q ss_pred --CCCccccccCCccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHH
Q 000778 532 --RNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALG 609 (1288)
Q Consensus 532 --~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Alg 609 (1288)
..+-++-.--...++..+++++.+..++....+ -++.+++ ++.++++|+|
T Consensus 178 ~e~~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s------------------------~vle~i~----~k~~al~a~a 229 (867)
T KOG0220|consen 178 TENFKNVNFTTISRKYFNSTKGLEYIEQLCIAEFS------------------------TVLEEIQ----SKTYALGAAA 229 (867)
T ss_pred hhcccccceeehhhhhcCchhhHHHHHHHHhhhhH------------------------HHHHHHH----HHHHHHHHHH
Confidence 001111011123455677777777766543111 1233343 4689999999
Q ss_pred HHHHHHHHhccchhhcccccceecCCCCCccCCCCCceecCHHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHH
Q 000778 610 GTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLR 689 (1288)
Q Consensus 610 all~YL~~~~l~~~l~~~~~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr 689 (1288)
++++|++.... .+... ..+ .+......+.|.||..+..+|||+.|.. -....+|++++|+|.|++|.|.||
T Consensus 230 ~llky~~~~~~--~~~~~---~sl---ri~~~gs~nT~~id~~~~~~lelV~~~~-~kn~~~l~~vl~~T~t~~g~r~lR 300 (867)
T KOG0220|consen 230 ALLKYVEEIQS--SVYAP---KSL---RICFQGSENTAMIDSSSAQSLELVINNQ-YKNNHTLFGVLNYTKTPGGYRRLR 300 (867)
T ss_pred HHHHHHHHHHH--hhhcc---cee---EEEeecccceeeeecccccceEEechhh-hhcccceeeeeeeeecccchhhHH
Confidence 99999997543 12111 111 1223345679999999999999999874 334569999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccC-CCCccchhhHHHHHHHHHHH
Q 000778 690 TWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG-RNSNKVVLYEDAAKKQLQEF 768 (1288)
Q Consensus 690 ~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 768 (1288)
..+++||+|...|+.|++++++|.. +.++...+|..|++++|++++++++........ ......+. .+..+
T Consensus 301 ssilqpl~d~~ti~~rleaiqeL~a-~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~-------~~~~L 372 (867)
T KOG0220|consen 301 SSILQPLTDIETINMRLEAIQELLA-DEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKIN-------NLIYL 372 (867)
T ss_pred hhhcccccchhhhhHHHHHHHHHhc-CchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHH-------HHHHH
Confidence 9999999999999999999999997 567788899999999999999998864321100 00000000 01111
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchH--------hhcCCCceeeCCCCCh
Q 000778 769 ISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV--------EANNSGRIIPHGGVDM 840 (1288)
Q Consensus 769 ~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~--------~~~~~g~ii~~~g~d~ 840 (1288)
..+|. ....+...+.+..+..+....... ..+.+..+.+.+.+.||-. ...++..+.++.+++.
T Consensus 373 k~tL~-------lv~~~~~al~~~~s~~~~e~~~~~-~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~ 444 (867)
T KOG0220|consen 373 KHTLE-------LVDPLKIALKNCNSNLLREYYGSF-KDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING 444 (867)
T ss_pred HHHHH-------HHHHHHHHHhhchhHHHHHHHHHh-cchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence 11111 111111111111122222111100 1123333344444444321 1234455678999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCceeeeecccc----ccCCCCCcEEEEeeecCcEEEeChHHH
Q 000778 841 DYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES----LRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1288)
Q Consensus 841 ~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~v~~~----~~~~~p~~~~~~ss~~~~~ry~tp~l~ 916 (1288)
.+|-+|+.+.++.....+.+.+..... ...+.+......||++.++.. ....+|..|+..+..+++++|+|-.+.
T Consensus 445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~-~~nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~fi~~~~~~~~~~~~s~~~i 523 (867)
T KOG0220|consen 445 FLDIARRTYTEIVDDIAGMISQLGEKF-SLNLRLSFSSARGFFIRITTDCIALPSDTLPSEFIKISKVKNSYSFTSADLI 523 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccccccccccEEEEeeccccccccccCchhhhhhhhhcceeeechHHHH
Confidence 999999999998887777666665554 334444444456788877765 245789999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEE
Q 000778 917 KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISA 996 (1288)
Q Consensus 917 ~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i 996 (1288)
+++.++.+.-.++......++..+++.+.+|.+.+..+.++++.||+|+|||++.... .||||+|++ .+.|
T Consensus 524 k~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~--~y~~P~fT~-------slaI 594 (867)
T KOG0220|consen 524 KMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLS--DYVRPEFTD-------SLAI 594 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc--cccccccCC-------ceee
Confidence 9999999999999999999999999999999999999999999999999999998743 899999985 2899
Q ss_pred ecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHh
Q 000778 997 KSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVR 1076 (1288)
Q Consensus 997 ~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ 1076 (1288)
++||||+|+.. ..+++|-||+.++. ..++.+||||||+||||||||+|+++||||+||||||..+.+++|++||+|
T Consensus 595 ~qGRHPILe~i--~~ek~i~N~t~~t~--~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtR 670 (867)
T KOG0220|consen 595 KQGRHPILEKI--SAEKPIANNTYVTE--GSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTR 670 (867)
T ss_pred ccCCCchhhhh--cccCcccCcceeec--ccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHH
Confidence 99999999963 46679999999985 468999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh
Q 000778 1077 MGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~ 1156 (1288)
||..|++..+.|+|+.||+++|.|+..++..+||+|||+||||++.||.++.||+.|++++ .+.+++|+||+++++...
T Consensus 671 mg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~-LkayTflATHFldIa~la 749 (867)
T KOG0220|consen 671 MGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLS-LKAYTFLATHFLDIAAIA 749 (867)
T ss_pred hcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987 488999999999999999
Q ss_pred cCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCC-CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 000778 1157 KKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGAC-PKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYG 1226 (1288)
Q Consensus 1157 ~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~-~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~~~ 1226 (1288)
...|.|.++|+-.+..+.. .....|+|..|.. +..||+.+|++.-+|++|++.|+..+-++.+.+.
T Consensus 750 n~~paVdnlHF~~q~~eNs----sk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~ 816 (867)
T KOG0220|consen 750 NYYPAVDNLHFLVQTDENS----SKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQIL 816 (867)
T ss_pred hcCccccceeeeeeecccc----hhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHHHH
Confidence 9999999999998776542 2223699999876 6789999999999999999999999888876654
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-69 Score=616.43 Aligned_cols=585 Identities=27% Similarity=0.415 Sum_probs=478.4
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhcccccceecCCCCCccCCCCCceecCHHHHHhcccccccCCC-------CCcccHH
Q 000778 601 GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSG-------DSSGTLY 673 (1288)
Q Consensus 601 ~~~al~Algall~YL~~~~l~~~l~~~~~f~~~~~~~~~~~~~~~~M~LD~~tl~~LEI~~n~~~g-------~~~gSL~ 673 (1288)
...+..|+|+++.+|.+..+...+..+ +|+ -|+.++..+...+.|.||-+|+.+|+||+....- +..-|||
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~-~v~-~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf 270 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDY-NVS-VPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLF 270 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccc-ccc-ccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHH
Confidence 467789999999999987765443322 222 2445566667778999999999999999876431 1123999
Q ss_pred HHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCc
Q 000778 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRG-VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752 (1288)
Q Consensus 674 ~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~-~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~ 752 (1288)
+++|+|.+..|+|+||.|+.+|++|..+|..||++|.+|.. .|.+....|.+.|+++||+--++.|+.++...
T Consensus 271 ~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~------ 344 (849)
T KOG0221|consen 271 GLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHTK------ 344 (849)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCce------
Confidence 99999999999999999999999999999999999999863 46677788999999999999999999654321
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCce
Q 000778 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1288)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~i 832 (1288)
+. .+.-+.+++...-.+.++|.+++.-.+ +..... ...+.++.+++..+...+|+..+..++++
T Consensus 345 -l~--------~W~~~~stv~~~~~i~~~~rslp~s~~------~~~~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~ 408 (849)
T KOG0221|consen 345 -LS--------DWQVLYSTVYSALGIRDACRSLPQSIQ------LFRDIA-QEFSDDLHEIASLIGKVIDFEGSLAENRF 408 (849)
T ss_pred -ec--------hHHHHHHHHHHHHHHHHHHHhCccchh------hhhHHH-HHHHHHHHHHHHHhhheeccccccccceE
Confidence 22 223334444433445555655432111 110000 01134566777778889999999999999
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEEEeCCceeeeeccccccCCCCCc----EEEEeeecC
Q 000778 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD--TSITYVTIGKDLYLLEVPESLRGSVPRD----YELRSSKKG 906 (1288)
Q Consensus 833 i~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~--~~i~~~~~~~~~y~i~v~~~~~~~~p~~----~~~~ss~~~ 906 (1288)
.+.+|+|+++|+.|..|..++..|.+..++....|.. +++..+++...+|++.||.-......++ |........
T Consensus 409 Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E 488 (849)
T KOG0221|consen 409 TVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEE 488 (849)
T ss_pred EecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccc
Confidence 9999999999999999999999998888776555543 5677888888999999987543222233 666666777
Q ss_pred cEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCC
Q 000778 907 FFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1288)
Q Consensus 907 ~~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1288)
..+|++....+|.+.+.++..++...+..|+-.|-.++......+.++...+++||+|+|||.+|..+ +|.||.++++
T Consensus 489 ~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~--gy~~P~lv~e 566 (849)
T KOG0221|consen 489 KLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADY--GYSRPRLVPE 566 (849)
T ss_pred eeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccccH
Confidence 78999999999999999998888888888999999999999999999999999999999999999754 7999999973
Q ss_pred CCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccc
Q 000778 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE 1066 (1288)
Q Consensus 987 ~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~ 1066 (1288)
.-.+.|.+||||+++. ....||||++..+. ++|++.+|||||.||||.|||+++++++|||+||||||+.|+
T Consensus 567 ----~~il~I~ngrh~l~e~---~~dtfvPNst~igg-dkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~ 638 (849)
T KOG0221|consen 567 ----VLILRIQNGRHPLMEL---CADTFVPNSTEIGG-DKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAE 638 (849)
T ss_pred ----HHHHHHHcCChhHHHH---HHHhcCCCceeecC-CCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhh
Confidence 2347899999999874 34689999999998 789999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCc--EEE
Q 000778 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQC--RGL 1144 (1288)
Q Consensus 1067 l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~--~vl 1144 (1288)
++++|+||+||+.-+.+..++|||+..+.+++.+++.||..||+|+||.|.||++.||.++..+++.|+..+..+ +|+
T Consensus 639 IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~Prif 718 (849)
T KOG0221|consen 639 IGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIF 718 (849)
T ss_pred cchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876433 688
Q ss_pred EEcCCchhhhhhcC--CCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 000778 1145 FSTHYHRLAVDYKK--DPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFE 1222 (1288)
Q Consensus 1145 ~~TH~~~l~~~~~~--~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le 1222 (1288)
++||+|++..+..- .+-+.++.|.....+| +.++|+|++.+|....|||+++|+.+|+|++||.||++++..++
T Consensus 719 vcThfheL~ne~~L~~n~i~qfltm~vlr~~g----e~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~ 794 (849)
T KOG0221|consen 719 VCTHFHELVNEQLLPQNPIVQFLTMEVLREDG----EDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIR 794 (849)
T ss_pred EeccHHHhhhhccCCcchhhhhhhHHHHHhcc----CCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHH
Confidence 89999999876442 3334455554433333 68999999999999999999999999999999999999999887
Q ss_pred H
Q 000778 1223 A 1223 (1288)
Q Consensus 1223 ~ 1223 (1288)
.
T Consensus 795 s 795 (849)
T KOG0221|consen 795 S 795 (849)
T ss_pred c
Confidence 4
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=3.3e-66 Score=654.62 Aligned_cols=532 Identities=21% Similarity=0.312 Sum_probs=430.7
Q ss_pred HHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCcc
Q 000778 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1288)
Q Consensus 674 ~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~ 753 (1288)
.+-++|.|++|+|+|++ ++|+.|++.|+.||+.|+++.. .........|++++|+++++.|+..+..
T Consensus 17 ~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~---~~~~~~~~~l~~~~Di~~~l~r~~~g~~-------- 83 (782)
T PRK00409 17 QLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK---LLRLKGLPPFEGVKDIDDALKRAEKGGV-------- 83 (782)
T ss_pred HHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCccHHHHHHHHhCCCC--------
Confidence 34478999999999999 5899999999999999998862 1122334468899999999999964221
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCcee
Q 000778 754 VVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRII 833 (1288)
Q Consensus 754 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~ii 833 (1288)
+ ...+|.++...|..+..+........ +....+.|..++. .++.+.++.+.|..+|| .+|.+
T Consensus 84 --l----~~~eL~~i~~~l~~~~~l~~~l~~~~---~~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i- 145 (782)
T PRK00409 84 --L----SGDELLEIAKTLRYFRQLKRFIEDLE---EEEELPILEEWVA---KIRTLPELEQEIHNCID-----EEGEV- 145 (782)
T ss_pred --C----CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHH---cCcCcHHHHHHHHHHhC-----CCCEE-
Confidence 1 13466677777766555443322110 0011234444443 34566677778888886 34544
Q ss_pred eCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEE
Q 000778 834 PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD---TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRY 910 (1288)
Q Consensus 834 ~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~---~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry 910 (1288)
++|++++|+.++..+.+++.++.+.+.+.....+. -+..++++++++|+|+|+.+.++.+|+.|+..+ .+|.++|
T Consensus 146 -~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s-~sg~t~y 223 (782)
T PRK00409 146 -KDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQS-SSGATLY 223 (782)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCceeeEE-CCCCEEE
Confidence 89999999999999999999888888765432221 122477889999999999999999998887765 6888999
Q ss_pred eChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCC
Q 000778 911 WTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSN 989 (1288)
Q Consensus 911 ~tp~-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~ 989 (1288)
++|. +.++++++.+++.++..++.+|+.+|...+.++...|..+.+++++|||++|+|.+|..+ +||+|.|++.
T Consensus 224 ~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~~--- 298 (782)
T PRK00409 224 IEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKAL--KATFPLFNDE--- 298 (782)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCccceEcCC---
Confidence 9998 999999999999999999999999999999999999999999999999999999999865 6999999752
Q ss_pred CCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-cccc
Q 000778 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEIS 1068 (1288)
Q Consensus 990 ~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~-~~l~ 1068 (1288)
..|.|+++|||+++. ..+||||+.++. .+++++|||||||||||+||+|+++++|||+|+||||.. +.++
T Consensus 299 --~~i~l~~~rHPll~~-----~~~Vpndi~l~~--~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~ 369 (782)
T PRK00409 299 --GKIDLRQARHPLLDG-----EKVVPKDISLGF--DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIP 369 (782)
T ss_pred --CcEEEcCcCCceecc-----CceECceeEECC--CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcccc
Confidence 469999999999964 369999999985 468999999999999999999999999999999999986 7999
Q ss_pred hHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC
Q 000778 1069 PVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148 (1288)
Q Consensus 1069 ~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH 1148 (1288)
+||+||+++|..|++..+.|+|+.+|.+++.|+..+++|+||||||||+|||+.+|.+++.++++++.+. ++++||+||
T Consensus 370 ~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH 448 (782)
T PRK00409 370 VFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTH 448 (782)
T ss_pred ccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999765 899999999
Q ss_pred CchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHH----HHHHH
Q 000778 1149 YHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKST----EFEAI 1224 (1288)
Q Consensus 1149 ~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~----~le~~ 1224 (1288)
|++++..+.+++.|.++++.. +.+++.|+|+|..|.+++|||++||+++|+|++||++|+++.. +++..
T Consensus 449 ~~el~~~~~~~~~v~~~~~~~-------d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l 521 (782)
T PRK00409 449 YKELKALMYNREGVENASVEF-------DEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNEL 521 (782)
T ss_pred hHHHHHHHhcCCCeEEEEEEE-------ecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999888888887763 3467999999999999999999999999999999999997543 34444
Q ss_pred hhh----hhccccccccccchhhHHHHHHHHHHHHHhhcc
Q 000778 1225 YGK----HKKESEENLPADHCVDHMVVLIQSLLNFTANLS 1260 (1288)
Q Consensus 1225 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1260 (1288)
+.+ ++..+++..+++...++.+.+.++++.+.+.+.
T Consensus 522 i~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 233333344444444455555555555555444
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=3.9e-62 Score=615.90 Aligned_cols=525 Identities=24% Similarity=0.316 Sum_probs=428.0
Q ss_pred HHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCcc
Q 000778 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1288)
Q Consensus 674 ~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~~~~~~ 753 (1288)
.+.++|.|++|++++++ +.|+++.+.|+.||+.++++.... . .-.|..++|+++++.|+..+...
T Consensus 17 ~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~----~--~~~l~~~~di~~~l~r~~~g~~l------- 81 (771)
T TIGR01069 17 NLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIE----N--NVRFFGFEDIRELLKRAELGGIV------- 81 (771)
T ss_pred HHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhh----c--cCCcCCCccHHHHHHHHhcCCcC-------
Confidence 45689999999999999 799999999999999999987421 1 34688999999999998532111
Q ss_pred chhhHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCce
Q 000778 754 VVLYEDAAKKQ-LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1288)
Q Consensus 754 ~~~~~~~~~~~-l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~i 832 (1288)
...+ |..+..+|..+..+...... ....+.|..+.. .++.+.++++.|..+|| .+|.+
T Consensus 82 -------~~~e~l~~i~~~l~~~~~l~~~l~~------~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i 140 (771)
T TIGR01069 82 -------KGLEYILVIQNALKTVKHLKVLSEH------VLDLEILFHLRL---NLITLPPLENDIIACID-----DDGKV 140 (771)
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHHHhc------cccchHHHHHHh---cCCCcHHHHHHHHHHhC-----CCCEE
Confidence 0112 55555555544443332211 001233444432 24456667778888887 35655
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH------HHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecC
Q 000778 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQR------KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKG 906 (1288)
Q Consensus 833 i~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~------~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~ 906 (1288)
+++.+++|+.++..++.++.++.+.+.... +++++ .++++++++|+|+|+.++++++|+.++..| .+|
T Consensus 141 --~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~---~~it~r~~r~vipvk~~~~~~i~g~v~~~S-~sg 214 (771)
T TIGR01069 141 --KDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSD---TIVTIRNGRYVLPLKSGFKGKIKGIVHDTS-SSG 214 (771)
T ss_pred --CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcC---ceEEEECCEEEEEeeHHHhhcCCCeEEEEe-CCC
Confidence 789999999999999999888888776643 33444 388889999999999999999998887765 689
Q ss_pred cEEEeChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecC
Q 000778 907 FFRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILD 985 (1288)
Q Consensus 907 ~~ry~tp~-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~ 985 (1288)
.++|++|. +.++++++.+++.++..++.+|+.+|+..+.++...|..+++++++|||++|+|.+|..+ ++|+|.+.+
T Consensus 215 ~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~ 292 (771)
T TIGR01069 215 ETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAV--KGEFPMPSF 292 (771)
T ss_pred CEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCeeceecC
Confidence 99999998 999999999999999999999999999999999999999999999999999999999854 689999875
Q ss_pred CCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-
Q 000778 986 SCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI- 1064 (1288)
Q Consensus 986 ~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~- 1064 (1288)
. ..|.++++|||+++. ..+||||+.++. ..++++||||||||||||||+|+++++|+|+|++||+..
T Consensus 293 ~-----~~i~l~~~rhPll~~-----~~~vp~di~l~~--~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~ 360 (771)
T TIGR01069 293 T-----GKIILENARHPLLKE-----PKVVPFTLNLKF--EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH 360 (771)
T ss_pred C-----CCEEEccccCceecC-----CceEeceeEeCC--CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc
Confidence 3 379999999999863 259999999974 347999999999999999999999999999999999976
Q ss_pred cccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEE
Q 000778 1065 FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGL 1144 (1288)
Q Consensus 1065 ~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl 1144 (1288)
+.++++|++|++++..+++..++|+|+.+|.+++.|+..+++++||||||||+|||+.+|.++++++++++.+ .|+++|
T Consensus 361 ~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~vi 439 (771)
T TIGR01069 361 SEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVL 439 (771)
T ss_pred ccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999976 489999
Q ss_pred EEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH--
Q 000778 1145 FSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFE-- 1222 (1288)
Q Consensus 1145 ~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le-- 1222 (1288)
++|||+++......+++|.+++|.. +.+++.|+|+|..|+++.|||++||+++|+|++||++|+++..+.+
T Consensus 440 itTH~~eL~~~~~~~~~v~~~~~~~-------d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~ 512 (771)
T TIGR01069 440 ITTHYKELKALMYNNEGVENASVLF-------DEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEE 512 (771)
T ss_pred EECChHHHHHHhcCCCCeEEeEEEE-------cCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHH
Confidence 9999999988877888999988863 3468999999999999999999999999999999999997654433
Q ss_pred --HHhhh----hhccccccccccchhhHHHHHHHHHHHHHhhcccc
Q 000778 1223 --AIYGK----HKKESEENLPADHCVDHMVVLIQSLLNFTANLSCQ 1262 (1288)
Q Consensus 1223 --~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1262 (1288)
..+.+ .+..++...++++..++.+...++++++.+.+++.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23334444444555556666666666666655543
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=2.2e-47 Score=422.09 Aligned_cols=234 Identities=42% Similarity=0.732 Sum_probs=197.5
Q ss_pred cccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC
Q 000778 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1288)
Q Consensus 978 ~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G 1057 (1288)
||||+|.++ ..|.|+++|||+++.. +....+||||+.++. ...++++||||||||||||||+|+.+++|||+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~-~~~~~~v~ndi~~~~-~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G 73 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEK-LENKKFVPNDIELSN-NKSRIIIITGPNMSGKSTFLKQIGLIVILAQIG 73 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHH-TTTSSC--EEEEESS-SSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CcccEEcCC-----CCEEEEeccCCEEecc-ccCCceecceeecCC-CceeEEEEeCCCccchhhHHHHHHHHhhhhhcC
Confidence 799999863 4899999999999864 346789999999986 444799999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1058 ~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
+||||+.+.++++|+||++++..|++..+.|+|+.||.+++.|+..+++.+|||+||+|+||++.||.+++++++++|.+
T Consensus 74 ~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~ 153 (235)
T PF00488_consen 74 CFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE 153 (235)
T ss_dssp --BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~ 1217 (1288)
+.+|.+|++|||++++......+.|..+||.....+ +.+.|+|+|.+|.++.|||+++|+++|+|++||+||+++
T Consensus 154 ~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i 228 (235)
T PF00488_consen 154 KSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDN-----DSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEI 228 (235)
T ss_dssp TTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEET-----TEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHH
T ss_pred hccccEEEEeccchhHHHhhhCccccccceeeeeec-----cccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence 568999999999999888777788999999877443 589999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000778 1218 STEFEA 1223 (1288)
Q Consensus 1218 ~~~le~ 1223 (1288)
.+++++
T Consensus 229 ~~~l~~ 234 (235)
T PF00488_consen 229 LKQLEE 234 (235)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999874
No 12
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-43 Score=437.82 Aligned_cols=483 Identities=24% Similarity=0.344 Sum_probs=395.5
Q ss_pred HHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHH--HhcCCCCCHHHHHHHHhccccccCCCCc
Q 000778 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFR--KALSRLPDMERLLARLFASSEANGRNSN 752 (1288)
Q Consensus 675 lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr--~~Lk~lpDlerll~ri~~~~~~~~~~~~ 752 (1288)
+..++.|+.|+-+|+. +.|..+.+.|+..++-+.++... ... . -.+.++-|+...+.++..+..
T Consensus 16 ~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~----~~~-~g~~~~~~l~~i~~~l~~~e~g~~------- 81 (753)
T COG1193 16 LASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDI----LED-EGLPPLGGLNDVSEALGRLEKGGR------- 81 (753)
T ss_pred HHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHH----Hhc-cCCCCchhhhhhHHHHHHHhhccc-------
Confidence 4589999999999999 68999999999999988877521 000 0 135677888888888752211
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchHhhcCCCce
Q 000778 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1288)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~~~~~~g~i 832 (1288)
+ ...+|..+...|+++..+..+...+.... .... ..++.+..+...+...+| ..|.+
T Consensus 82 --l-----~~~el~~i~~~l~~~~~lkr~~~~~e~~~----~~~~-------~~~~~~~~l~~~i~~~id-----~~g~i 138 (753)
T COG1193 82 --L-----HVEELLEISDFLRGFRALKRAIKKLERIK----RTLA-------LALIELSDLELEINIPID-----DDGLI 138 (753)
T ss_pred --C-----CHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHH-------HhhhcchHHHHHHhhhhc-----ccccc
Confidence 0 23456677777777776665544332211 0111 123455555556666665 34555
Q ss_pred eeCCCCChhHHHHHHHHHHHHH----HHHHHHHHH-HHHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCc
Q 000778 833 IPHGGVDMDYDSACKKVKEIEA----SLTKHLKEQ-RKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1288)
Q Consensus 833 i~~~g~d~~ld~~~~~~~~i~~----~L~~~l~~~-~~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~ 907 (1288)
.+..++.++..+..++.+.. .++.+++.. ...+.+. +++.++++|+++|+..+++.+++..+..+ ..|.
T Consensus 139 --~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e~---~v~~r~~r~vlpvk~~fk~~i~giv~d~s-ssg~ 212 (753)
T COG1193 139 --KDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQDR---IVTTRDGREVLPVKAEFKGAIKGIVHDTS-SSGA 212 (753)
T ss_pred --cccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhhc---eEeccCCeEEeHHHHHhhhhcCceEeecc-cccC
Confidence 56778889988887765544 455555544 5555554 78889999999999999999999987776 4788
Q ss_pred EEEeChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCC
Q 000778 908 FRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1288)
Q Consensus 908 ~ry~tp~-l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1288)
+.|..|. +..+++++.++..+.+.+...+++.+...+.++...+..+...++.||++.+.+.++.. ..+++|.|.+
T Consensus 213 tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~--~~~v~P~~~~- 289 (753)
T COG1193 213 TLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKA--LKGVKPDFSN- 289 (753)
T ss_pred eeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHh--hccCCCccCC-
Confidence 9999998 99999999999999999999999999999999999999999999999999999999985 4678999974
Q ss_pred CCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccccc-
Q 000778 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF- 1065 (1288)
Q Consensus 987 ~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~- 1065 (1288)
...|.+.++|||++.. .+|+++.++. .-..++|||||++|||+.||+++++.+|+|.|.++|+...
T Consensus 290 ----~~~l~l~~~~HPll~~-------~v~~~i~~~~--e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gs 356 (753)
T COG1193 290 ----DGVLELLDARHPLLKE-------DVPNDLELGE--ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGS 356 (753)
T ss_pred ----CceEEeccccCccCcc-------cccccccccc--ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCC
Confidence 3479999999999974 2899999985 3468999999999999999999999999999999999886
Q ss_pred ccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEE
Q 000778 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLF 1145 (1288)
Q Consensus 1066 ~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~ 1145 (1288)
.+++|+.+|..+|.+|++.+.+|||+++|..++.++..++ +|+|+||+|+||+|.+|++++.++++++.+. ++.++.
T Consensus 357 ei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~-~~~~~~ 433 (753)
T COG1193 357 ELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEK-PAKIVA 433 (753)
T ss_pred cchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhc-ccceeh
Confidence 8999999999999999999999999999999999996444 9999999999999999999999999999775 999999
Q ss_pred EcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHH----HHHH
Q 000778 1146 STHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK----STEF 1221 (1288)
Q Consensus 1146 ~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~----~~~l 1221 (1288)
+|||.++..+...++.+.+..|. ++.+++.++|++..|.+++||+|.+|..+|+|..+|++|+.. ..++
T Consensus 434 tTH~~elk~~~~~~~~v~nas~~-------fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~~~~~ 506 (753)
T COG1193 434 TTHYRELKALAAEREGVENASME-------FDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELL 506 (753)
T ss_pred HhhHHHHHHHHhcchhhhchhhh-------hhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCchHhHH
Confidence 99999999999998889888886 456889999999999999999999999999999999999852 3444
Q ss_pred HHHhh
Q 000778 1222 EAIYG 1226 (1288)
Q Consensus 1222 e~~~~ 1226 (1288)
+.+++
T Consensus 507 ~~~i~ 511 (753)
T COG1193 507 EELIE 511 (753)
T ss_pred HHHhh
Confidence 44444
No 13
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1e-43 Score=387.80 Aligned_cols=216 Identities=57% Similarity=0.930 Sum_probs=200.0
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++.. ....+||||++|+. .++++++||||||+|||||||+++++++|||+|+||||..+.++++|+||+
T Consensus 2 ~~~~rHPll~~~--~~~~~v~ndi~l~~-~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~ 78 (218)
T cd03286 2 FEELRHPCLNAS--TASSFVPNDVDLGA-TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFT 78 (218)
T ss_pred cccccCCEEecc--cCCCeEEeeeEEee-cCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEE
Confidence 678999999742 23579999999997 668999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..|++..+.|+|+.||++++.|+..+++++||||||||+||++.||.+++++++++|.+..++++|++|||++++..
T Consensus 79 ~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 79 RIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred ecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986558999999999999999
Q ss_pred hcCCCceEEeeeEEEEecC-CCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q 000778 1156 YKKDPRVSLCHMACQVGNG-VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g-~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A 1214 (1288)
+..+++|.++||...+... +.+.+++.|+|+|.+|.++.|||+++|+++|+|++||+||
T Consensus 159 ~~~~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 159 FHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred hhcCcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 9888899999999877542 1123689999999999999999999999999999999987
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.2e-42 Score=380.46 Aligned_cols=218 Identities=44% Similarity=0.695 Sum_probs=198.1
Q ss_pred EEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHH
Q 000778 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073 (1288)
Q Consensus 994 l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i 1073 (1288)
|.|+++|||+++. +....+++||++|.. .++++++|+||||+|||||||+|+++.++||+|++||+..+.++++|+|
T Consensus 1 ~~i~~~rHPlle~--~~~~~~v~n~i~~~~-~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 1 ILIKEGRHPMIES--LLDKSFVPNDIHLSA-EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CeeecccCCEEec--cCCCCEEEEeEEEEe-cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 4689999999985 233579999999997 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1074 ~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
|++++..|++..+.|+|+.||.+++.|+..+++++||||||||+||++.|+.+++++++++|.+..++++|++||+++++
T Consensus 78 ~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 78 LTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred EEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876589999999999998
Q ss_pred hhhcC-CCceEEeeeEEEEecC---CCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHH
Q 000778 1154 VDYKK-DPRVSLCHMACQVGNG---VGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKA 1214 (1288)
Q Consensus 1154 ~~~~~-~~~v~~~~~~~~~~~g---~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A 1214 (1288)
..... .+.+.++||....... ..+.++++|+|||.+|.++.|||+++|+++|+|++||+||
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 158 EILRRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HHHHhcccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 76643 2468899998765432 1235689999999999999999999999999999999997
No 15
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.6e-41 Score=370.33 Aligned_cols=220 Identities=41% Similarity=0.712 Sum_probs=195.5
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++.. ...++|+||++++. .++++++|+||||+|||||||+|+.+++|||+|+||||..+.+++++++++
T Consensus 2 ~~~~~hpll~~~--~~~~~v~~~~~~~~-~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~ 78 (222)
T cd03285 2 LKEARHPCVEAQ--DDVAFIPNDVTLTR-GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA 78 (222)
T ss_pred ccccCCCEEecc--CCCCeEEeeEEEee-cCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe
Confidence 679999999862 34679999999997 678999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..+.+..+.|+|+.||.+++.++..+++|+||||||||+||+++|+.++++++++++.++.++++||+||++++...
T Consensus 79 ~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~ 158 (222)
T cd03285 79 RVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTAL 158 (222)
T ss_pred eeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999976558999999999877664
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEF 1221 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~l 1221 (1288)
....+.+...++.....+ ..+.+.|+|+|.+|.++.|||+++|+++|+|++||+||+++++++
T Consensus 159 ~~~~~~i~~g~~~~~~~~---~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 159 ADEVPNVKNLHVTALTDD---ASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred hhcCCCeEEEEEEEEEeC---CCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 443344545555433322 236899999999999999999999999999999999999998876
No 16
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=7.3e-39 Score=350.80 Aligned_cols=214 Identities=48% Similarity=0.712 Sum_probs=194.1
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++.. +....+|+||++|+. . .++++||||||+|||||||+|+++++|+|+|+++|+..+.+++++++|+
T Consensus 2 i~~~~hp~~~~~-~~~~~~v~n~~~l~~-~-~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~ 78 (216)
T cd03284 2 IEGGRHPVVEQV-LDNEPFVPNDTELDP-E-RQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFT 78 (216)
T ss_pred cccccCCEEeec-cCCCceEeeeEEecC-C-ceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEec
Confidence 689999999852 223579999999997 3 3899999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..|++..+.|+|+.||.+++.++..+++|+||||||||+||+++|+.+++++++++|.+..++++|++||++++...
T Consensus 79 ~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l 158 (216)
T cd03284 79 RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTEL 158 (216)
T ss_pred cCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976558999999999988776
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~ 1217 (1288)
....+++.++|+..... .+++.|+|++..|.++.|||+++|+++|+|++||+||+++
T Consensus 159 ~~~~~~v~~~~~~~~~~-----~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 159 EGKLPRVKNFHVAVKEK-----GGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred hhcCCCeEEEEEEEEee-----CCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 66566787888765432 4689999999999999999999999999999999999975
No 17
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-37 Score=339.71 Aligned_cols=207 Identities=39% Similarity=0.653 Sum_probs=186.2
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++. ....+||||+.++. ..+++++||||||+|||||||+|+++.+|+|+|+++|+..+.++++|++++
T Consensus 2 i~~~rHPll~~---~~~~~vpnd~~l~~-~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~ 77 (213)
T cd03281 2 IQGGRHPLLEL---FVDSFVPNDTEIGG-GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFT 77 (213)
T ss_pred cccccCCEEec---cCCceEcceEEecC-CCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeee
Confidence 67999999985 23479999999985 334899999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc-c-CcEEEEEcCCchhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK-V-QCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~-~-~~~vl~~TH~~~l~ 1153 (1288)
+++..+++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. . ++++|++|||++++
T Consensus 78 ~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 78 RMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred eeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999764 1 35899999999999
Q ss_pred hhhc--CCCceEEeeeEEEEecC-CCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1154 VDYK--KDPRVSLCHMACQVGNG-VGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1154 ~~~~--~~~~v~~~~~~~~~~~g-~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
..+. ..+.+.++||...+... ....+.+.|+|+|.+|+++.|||+++|+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 158 NRSLLPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred HhhhhccCCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 8875 56789999999876531 11246899999999999999999999999996
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.4e-37 Score=337.18 Aligned_cols=201 Identities=38% Similarity=0.605 Sum_probs=186.8
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
|+++|||+++. ...++++||++|+. ..+++++||||||+|||||||+|+++++|+|+|+||||..+.++++++|++
T Consensus 2 i~~~~hpll~~---~~~~~v~~~~~~~~-~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~ 77 (204)
T cd03282 2 IRDSRHPILDR---DKKNFIPNDIYLTR-GSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLS 77 (204)
T ss_pred cccccCCeEec---cCCcEEEeeeEEee-CCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeE
Confidence 67899999985 24579999999998 678999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+++..|++..+.|+|+.||+++..++..+++|+||||||||+||++.|+.++++++++++.+. ++++|++||+++++..
T Consensus 78 ~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 78 RLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHFRDIAAI 156 (204)
T ss_pred ecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999775 8999999999999999
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCC-CcHHHHHHHHcC
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACP-KSYGVNVARLAG 1205 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~-~s~g~~vA~~aG 1205 (1288)
+...+.+.++||...+.. .+.+.|+|+|.+|.+. .|||+++|+++.
T Consensus 157 ~~~~~~v~~~~~~~~~~~----~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 157 LGNKSCVVHLHMKAQSIN----SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred hhcCCCeEEEEEEEEEcC----CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 888889999999876643 2577899999999999 999999999764
No 19
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.6e-34 Score=333.89 Aligned_cols=306 Identities=34% Similarity=0.441 Sum_probs=236.4
Q ss_pred cccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccC
Q 000778 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG 748 (1288)
Q Consensus 669 ~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~lpDlerll~ri~~~~~~~~ 748 (1288)
+||||++||+|+|++|+|+||+|+++|++|.++|++||++|++|.. +..+...++..|+++||++|++.++..+. .
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~-~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~-- 76 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVE-NPELRQKLRQLLKRIPDLERLLSRIERGR-A-- 76 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHccCCcHHHHHHHHHcCC-C--
Confidence 4799999999999999999999999999999999999999999986 55677889999999999999999985321 0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchH-hhc
Q 000778 749 RNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV-EAN 827 (1288)
Q Consensus 749 ~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~~~~~~d~~-~~~ 827 (1288)
...++..+..++..+..+.+.+.... .......+..+. . .+...+..+.+.++.. ...
T Consensus 77 ------------~~~el~~l~~~l~~~~~l~~~l~~~~---~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~~~~~~ 135 (308)
T smart00533 77 ------------SPRDLLRLYDSLEGLKEIRQLLESLD---GPLLGLLLKVIL---E---PLLELLELLLELLNDDDPLE 135 (308)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHhhc---c---chHHHHHHHHHHhccCCccc
Confidence 12345556666555444433221110 000001111111 0 1112222222222111 111
Q ss_pred CCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCc
Q 000778 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1288)
Q Consensus 828 ~~g~ii~~~g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~ 907 (1288)
......+++|++++||.++..+.+++++++++++++.+.++.+.+++..+...+|+++||.....++|++|+..+++++.
T Consensus 136 ~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~s~s~~~ 215 (308)
T smart00533 136 VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNT 215 (308)
T ss_pred ccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchhhccCChHHHHHhhhccc
Confidence 11112358999999999999999999999999998877766655665555566799999999888999999999999999
Q ss_pred EEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCC
Q 000778 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSC 987 (1288)
Q Consensus 908 ~ry~tp~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~ 987 (1288)
.+|.++++.++++++.+++.++..+...++.+++..+.++...|..+++++++|||++|+|.+|..+ +||||+|++.
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~--~~~~P~i~~~- 292 (308)
T smart00533 216 ERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEG--NYVRPEFVDS- 292 (308)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcCCeeCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999754 7999999863
Q ss_pred CCCCCeEEEecCCCCcccc
Q 000778 988 SNEEPYISAKSLGHPVLRS 1006 (1288)
Q Consensus 988 ~~~~~~l~i~~~rHP~l~~ 1006 (1288)
+.|.|+++|||+++.
T Consensus 293 ----~~l~i~~~rHPlle~ 307 (308)
T smart00533 293 ----GELEIKNGRHPVLEL 307 (308)
T ss_pred ----CCEEEeeCCCCcccC
Confidence 579999999999973
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.2e-34 Score=310.66 Aligned_cols=184 Identities=53% Similarity=0.820 Sum_probs=171.2
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCc
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~s 1108 (1288)
+++||||||||||||||+|+++++|||+|++|||..+.++++|+++++++..+++..+.|+|+.||++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEec
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLS 1188 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~ 1188 (1288)
|+|+|||++|||+.++.++++++++++.++.++++|++||++++.......++|.++||...... +++.|+|+|.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~-----~~~~~~Y~l~ 155 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEET-----ENLTFLYKLT 155 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEec-----CceeEEEEEe
Confidence 99999999999999999999999999876448899999999998877666678999999876543 4699999999
Q ss_pred CCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 000778 1189 PGACPKSYGVNVARLAGIPDKVLQKAVAK 1217 (1288)
Q Consensus 1189 ~G~~~~s~g~~vA~~aGlP~~vi~~A~~~ 1217 (1288)
+|.++.|||+++|+++|+|++||+||+++
T Consensus 156 ~G~~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 156 PGVAGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred ECCCCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999999874
No 21
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=3.6e-34 Score=309.87 Aligned_cols=196 Identities=36% Similarity=0.530 Sum_probs=180.7
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
++++|||+++. .++|+||++|.. |++++||||||||||||||+|++.++++|.|++||+..+.++ .+.+|.
T Consensus 2 ~~~~~hp~~~~-----~~~v~n~i~l~~---g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~ 72 (199)
T cd03283 2 AKNLGHPLIGR-----EKRVANDIDMEK---KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFT 72 (199)
T ss_pred CcccCCCeecC-----CCeecceEEEcC---CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEE
Confidence 67899999974 369999999985 589999999999999999999999999999999999888887 789999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~--~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+++..|++..+.|.|..++.++..++..+. +|+|||||||++|||+.++..+..++++.+.+. +.++|++||+++++
T Consensus 73 ~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiivTH~~~~~ 151 (199)
T cd03283 73 SIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIISTHDLELA 151 (199)
T ss_pred eccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEcCcHHHH
Confidence 999999999999999999999999999988 999999999999999999998888889988754 89999999999999
Q ss_pred hhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1154 VDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1154 ~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
..+...++|.++||...+.+ ..+.|+|+|.+|+|+.|||+++|+++|+
T Consensus 152 ~~~~~~~~v~~~~~~~~~~~-----~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 152 DLLDLDSAVRNYHFREDIDD-----NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred HhhhcCCCeEEEEEEEEEEC-----CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 88877889999999988753 5899999999999999999999999996
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=8.1e-33 Score=300.29 Aligned_cols=199 Identities=32% Similarity=0.491 Sum_probs=175.2
Q ss_pred EEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-cccchHHHH
Q 000778 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRI 1073 (1288)
Q Consensus 995 ~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~-~~l~~~d~i 1073 (1288)
+|+++|||+++. ...+++++++.+.. ..++++||||||+|||||||+|+.+.+++|+|++||+.. ..+++++++
T Consensus 1 ~~~~~~hp~~~~---~~~~~~~~~~~i~~--~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~ 75 (200)
T cd03280 1 RLREARHPLLPL---QGEKVVPLDIQLGE--NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENI 75 (200)
T ss_pred CCcccCCCEEec---cCCceEcceEEECC--CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEE
Confidence 378999999985 25679999999874 236899999999999999999998899999999999975 678889999
Q ss_pred HHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1074 ~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+++++..+.+..+.|+|+.+|+++..++..+++|+++|+|||++|||+.++..+...+++.+.+. ++++|++||++++.
T Consensus 76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~~l~ 154 (200)
T cd03280 76 FADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYGELK 154 (200)
T ss_pred EEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHHHHH
Confidence 99999999999999999999999999998899999999999999999999999888888888654 89999999997765
Q ss_pred hhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1154 VDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1154 ~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
. +++ ++..++.|.++.+ .+++.|+|++.+|.++.|||+++|+.+|+
T Consensus 155 ~-~~d--~~~~l~~g~l~~~----~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 155 A-YAY--KREGVENASMEFD----PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred H-HHh--cCCCeEEEEEEEe----cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 4 454 5666677777654 35789999999999999999999999996
No 23
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.98 E-value=4.2e-32 Score=295.18 Aligned_cols=201 Identities=52% Similarity=0.772 Sum_probs=177.4
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~ 1075 (1288)
++++|||+++.. ....+++|||+.++. |++++||||||||||||||+|++..+++|.|+++|+..+.+++++++++
T Consensus 2 ~~~~~~p~l~~~-~~~~~~~~~~~~l~~---~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~ 77 (202)
T cd03243 2 IKGGRHPVLLAL-TKGETFVPNDINLGS---GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT 77 (202)
T ss_pred cccccCCEEecc-ccCCceEeeeEEEcC---CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE
Confidence 678999999742 123579999999974 6899999999999999999999999999999999999999999999999
Q ss_pred hcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1076 ~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
.++..+++..+.|+|+.|++++..++..+.+|+++|||||++|||+.++..+.+++++.+.+. ++++|++||+++++..
T Consensus 78 ~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 78 RIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELADL 156 (202)
T ss_pred EecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888888888654 8999999999999887
Q ss_pred hcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCC
Q 000778 1156 YKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGI 1206 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGl 1206 (1288)
....+.+...++..... ..++.|+|++.+|.++.|||+.+|+..|+
T Consensus 157 ~~~~~~l~~~~~~~~~~-----~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 157 PEQVPGVKNLHMEELIT-----TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred hhcCCCeEEEEEEEEec-----CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 66444555555543322 35789999999999999999999999886
No 24
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.97 E-value=9e-31 Score=257.89 Aligned_cols=107 Identities=37% Similarity=0.683 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHhhCCCeEEEEeeCceEEEecccHHHHhhhcceeeec----CC--CCcCCcCcccHhHHHHHHHHcCCeE
Q 000778 328 SEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK----GE--QPHCGFPERNFSMNVEKLARKGYRV 401 (1288)
Q Consensus 328 TP~~~QyweiK~~~~D~VlfFkvGkFYEly~~DA~i~ak~L~L~~~~----g~--~~~~GfPe~sl~~y~~kLV~~GyKV 401 (1288)
|||++|||++|++|||+|+||++|+|||+|++||+.+|+.|+++++. ++ .||||||.++++.|+++|+++||||
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999873 22 6999999999999999999999999
Q ss_pred EEEeccCChHHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc
Q 000778 402 LVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444 (1288)
Q Consensus 402 avveQ~Et~~~~~~r~~~~g~~~kvv~Rev~~ViTpGTl~d~~ 444 (1288)
+||+|+|++... +++++|+|++|+||||++|++
T Consensus 81 ~i~~q~~~~~~~----------~~~~~R~v~~i~TpGt~~~~~ 113 (113)
T PF01624_consen 81 AIYEQVETPSET----------KGLIEREVTRIYTPGTLIDDE 113 (113)
T ss_dssp EEEEE-S-HHHH----------SSS--EEEEEEEBTTS-TST-
T ss_pred EEEEecCCcccc----------CCCccEEEEEEECcCeecCcC
Confidence 999999998642 258999999999999999864
No 25
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.88 E-value=7.9e-22 Score=214.09 Aligned_cols=91 Identities=47% Similarity=0.776 Sum_probs=79.6
Q ss_pred HHHHHhcccccccCCCCCcccHHHHHhhhcChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhcCCC
Q 000778 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1288)
Q Consensus 651 ~~tl~~LEI~~n~~~g~~~gSL~~lLn~t~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~Lk~l 730 (1288)
++|+++||||++..+++.+||||++||+|.|++|+|+|++||++|++|++.|+.||++|++|.. ++.+...++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~-n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQ-NEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHH-THHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hhhHhhhhhhhhhcc
Confidence 5899999999988888889999999999999999999999999999999999999999999996 667778899999999
Q ss_pred CCHHHHHHHHhc
Q 000778 731 PDMERLLARLFA 742 (1288)
Q Consensus 731 pDlerll~ri~~ 742 (1288)
+|+++++.++..
T Consensus 80 ~di~~~l~~l~~ 91 (204)
T PF05192_consen 80 PDIERILKRLRS 91 (204)
T ss_dssp -SHHHHHHHHHT
T ss_pred chHHHHHHHHHH
Confidence 999999999864
No 26
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.82 E-value=3.4e-20 Score=204.75 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=125.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCcccccccc---ccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~~---~l~ 1068 (1288)
+++|.+|++|++ .+|++++|+||||||||||||+|+++. -+|+.-+|||+... .+.
T Consensus 14 ~~~il~~ls~~i-~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 14 GKPILDDLSFSI-PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CeeEEecceEEe-cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 478999999999 789999999999999999999999854 24666678887631 111
Q ss_pred -------------------------hHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1069 -------------------------PVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1069 -------------------------~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
.++..+..+|..+...+...++| +|.+++..+.++|++|.++||||| |+.+
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEP---Ts~L 169 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEP---TSHL 169 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCC---cccc
Confidence 12334666777777777777777 566677777788999999999999 6666
Q ss_pred HH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|- +--...++..+.++.|.|+|+++||++++..+++ ++..++.|.++..|.
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad--~~i~lk~G~i~a~G~ 222 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD--HLILLKDGKIVAQGT 222 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCeEEeecC
Confidence 62 2223478888876779999999999999999999 999999999999885
No 27
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=9.8e-20 Score=191.30 Aligned_cols=134 Identities=43% Similarity=0.548 Sum_probs=114.3
Q ss_pred EecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh----------cCcccccccc
Q 000778 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----------VGADVPAEIF 1065 (1288)
Q Consensus 996 i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq----------~G~~vPa~~~ 1065 (1288)
|..++||.+ +++|+|.+.. +.+++|||||||||||+||+|+.+..+++ .|+++|+..+
T Consensus 2 i~~~~~~~~---------~~~~~i~~~~---~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 69 (162)
T cd03227 2 IVLGRFPSY---------FVPNDVTFGE---GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA 69 (162)
T ss_pred ceeCCCCEE---------EeccEEecCC---CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE
Confidence 456789976 5799999863 37999999999999999999999999999 9999999876
Q ss_pred ccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1066 ~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~--~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
.+ ++++++ +|..+.++..++.++..++ +|+|+|||||++|||+.++..++..+.+++. + ++++
T Consensus 70 ~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~-~-~~~v 134 (162)
T cd03227 70 EL-----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-K-GAQV 134 (162)
T ss_pred EE-----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEE
Confidence 65 565554 6777788888888888765 9999999999999999999999988887764 4 7899
Q ss_pred EEEcCCchhhhhh
Q 000778 1144 LFSTHYHRLAVDY 1156 (1288)
Q Consensus 1144 l~~TH~~~l~~~~ 1156 (1288)
|++||+++++...
T Consensus 135 ii~TH~~~~~~~~ 147 (162)
T cd03227 135 IVITHLPELAELA 147 (162)
T ss_pred EEEcCCHHHHHhh
Confidence 9999999998753
No 28
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1e-19 Score=199.98 Aligned_cols=150 Identities=24% Similarity=0.220 Sum_probs=120.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------h---------hcCcccccccc---cc------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------A---------QVGADVPAEIF---EI------ 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------a---------q~G~~vPa~~~---~l------ 1067 (1288)
.++.||+|.+ .+|++++|+||||||||||+|+|+|+.-. . +.-.|||+... .+
T Consensus 18 ~vl~~i~l~v-~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d 96 (254)
T COG1121 18 PVLEDISLSV-EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD 96 (254)
T ss_pred eeeeccEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH
Confidence 5889999999 78999999999999999999999996521 1 12358887431 11
Q ss_pred ---------------------chHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 ---------------------SPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ---------------------~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
..++..+.++|..+...+..+.+| ++++++..+.+++++|.|+|||||+.|.|+.- .
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~-~ 175 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG-Q 175 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH-H
Confidence 123456677888877777888888 56677778888999999999999999999884 4
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
...+.+|.+|.++ |||||++|||++.+..+++ +|..++..
T Consensus 176 ~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D--~vi~Ln~~ 215 (254)
T COG1121 176 KEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFD--RVICLNRH 215 (254)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCC--EEEEEcCe
Confidence 4556999999887 9999999999999999988 77666544
No 29
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=6.1e-19 Score=185.93 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=122.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCccccccc---cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEI---FE 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~---~~ 1066 (1288)
+..|+++|++++ .+|++++|+||+|||||||||+|.++-.. .++| +|.+.. ..
T Consensus 14 ~~~VLkgi~l~v-~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~fnLFPH 91 (240)
T COG1126 14 DKEVLKGISLSV-EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQFNLFPH 91 (240)
T ss_pred CeEEecCcceeE-cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eeccccccccc
Confidence 457999999999 89999999999999999999999975311 1223 333322 12
Q ss_pred cchH----------------------HHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPV----------------------DRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~----------------------d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+++. -.++.++|..|......+.+|+ +.++++.+.++|.+|.++|+||||+..||.-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 2222 2357788888888888888885 4556888888999999999999966666654
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
... ...++..|++. |.|.+++||.+.+|...++ +|++++.|.++..|.
T Consensus 172 v~E-VL~vm~~LA~e-GmTMivVTHEM~FAr~Vad--rviFmd~G~iie~g~ 219 (240)
T COG1126 172 VGE-VLDVMKDLAEE-GMTMIIVTHEMGFAREVAD--RVIFMDQGKIIEEGP 219 (240)
T ss_pred HHH-HHHHHHHHHHc-CCeEEEEechhHHHHHhhh--eEEEeeCCEEEEecC
Confidence 332 34788888776 8999999999999999999 999999999888764
No 30
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=6.4e-19 Score=202.06 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=123.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc---ccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EIS- 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~---~l~- 1068 (1288)
..++++|+|.+ .+|++++|+||||||||||||+|+|++. ..++| |+|.... .++
T Consensus 18 ~~~l~~vs~~i-~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~ 95 (293)
T COG1131 18 KTALDGVSFEV-EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTV 95 (293)
T ss_pred CEEEeceeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccH
Confidence 58999999999 7899999999999999999999999652 12233 5554321 111
Q ss_pred --------------------hHHHHHHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1069 --------------------PVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1069 --------------------~~d~i~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.++.++..+|..+......++||.+|+ ++..+++++.+|+|+|||||++|.|+.-.. .
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~-~ 174 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR-E 174 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHH-H
Confidence 234566667766643444678886665 567778889999999999999999998555 4
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++.++|||++||.++.+..+|+ +|.+++.|.++..|.
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~d--~v~il~~G~~~~~g~ 220 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEELCD--RVIILNDGKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC--EEEEEeCCEEEEeCC
Confidence 5688888877645899999999999999988 999999999998874
No 31
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=5.4e-19 Score=189.03 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=127.4
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------- 1052 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i------------------- 1052 (1288)
+.|++++...-+ +++.|..+++|++ .+|++++|+||+|+|||||||+|+|+.-
T Consensus 7 ~~I~vr~v~~~f-------G~~~Ild~v~l~V-~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-------GDRVILDGVDLDV-PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-------CCEEEecCceeee-cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHH
Confidence 456666554322 3578999999999 8999999999999999999999998541
Q ss_pred -----HhhcCcccc--ccccccchHHHH----------------------HHhcCchhh-HhhcccchHHHHHH-HHHHH
Q 000778 1053 -----LAQVGADVP--AEIFEISPVDRI----------------------FVRMGAKDH-IMAGQSTFLTELSE-TALML 1101 (1288)
Q Consensus 1053 -----laq~G~~vP--a~~~~l~~~d~i----------------------~~~ig~~d~-i~~~~Stf~~e~~~-~~~il 1101 (1288)
.-++|...- |-...+.+++++ +..+|.... .....|.++++|++ ++.+.
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 111221110 111223333322 122344444 34446778888864 67777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
++|.+|+||++|||++|.||.....+ ..++..|.+..++|++++|||++-+...++ +|.++..+.++..|+.
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~D--rv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIAD--RVAVLADGKVIAEGTP 230 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhc--eEEEEeCCEEEEeCCH
Confidence 88999999999999999999965544 477888888889999999999999999999 9999999999988853
No 32
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=8.7e-19 Score=188.59 Aligned_cols=161 Identities=17% Similarity=0.242 Sum_probs=115.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcc----cccccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGAD----VPAEIFEI 1067 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~----vPa~~~~l 1067 (1288)
+-.+.||++|++ .+|++++|+||||+||||++++|.|+.-. ++.|.. ++.-...+
T Consensus 16 Gl~Al~~Vsl~v-~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 16 GLTAVNDVSLEV-RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CEEEEeceeEEE-cCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 457899999999 89999999999999999999999985421 122210 00011112
Q ss_pred chHHHH---------------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEe
Q 000778 1068 SPVDRI---------------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1068 ~~~d~i---------------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLD 1113 (1288)
++++.+ +.++|..+........++ ++++.+-.+.++|++|.|||||
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 222222 222222222222223333 4555556667789999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
||.+|.++.+...++ .++..+.+..+.+++++.|++.++..+++ +|.+++.|.++.+|++
T Consensus 175 EPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~d--ri~Vl~~G~~IAeG~P 234 (250)
T COG0411 175 EPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLAD--RIVVLNYGEVIAEGTP 234 (250)
T ss_pred CccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhcc--EEEeccCCcCcccCCH
Confidence 999999999988876 56777877668999999999999999999 9999999999988863
No 33
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=185.11 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=121.0
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------HhhcCccccccc---cccchHHH
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEI---FEISPVDR 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------laq~G~~vPa~~---~~l~~~d~ 1072 (1288)
+..+.+|++|.+ .+|++++++||||+||||++|+|.++.- +-+.-.|+|.+. ..+.+.|+
T Consensus 14 ~k~av~~isf~v-~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 14 DKKAVDNISFEV-PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred ceeeecceeeee-cCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 357899999999 8999999999999999999999998652 122234778765 34555555
Q ss_pred H---------------------HHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1073 I---------------------FVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1073 i---------------------~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+ +.|+++.+.......+++.+++ .+..|.+.+++|.|||||||++|.||.....+-.+
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~ 172 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHH
Confidence 3 2333333333334455665554 46677778999999999999999999987766655
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|.+ +.+ .|.||||+||-++-+..+|+ +++.++.|..|-.|+
T Consensus 173 I~~-lk~-~GatIifSsH~Me~vEeLCD--~llmL~kG~~V~~G~ 213 (300)
T COG4152 173 IFE-LKE-EGATIIFSSHRMEHVEELCD--RLLMLKKGQTVLYGT 213 (300)
T ss_pred HHH-HHh-cCCEEEEecchHHHHHHHhh--hhheecCCceEEecc
Confidence 555 544 49999999999999999999 899999998887764
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.9e-18 Score=185.10 Aligned_cols=152 Identities=22% Similarity=0.185 Sum_probs=114.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----cC----------ccccccccccc---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----VG----------ADVPAEIFEIS--------- 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----~G----------~~vPa~~~~l~--------- 1068 (1288)
..++.||+|++ .+|++++|+||+|||||||||.|+|+.-... .| .+|+++.+-++
T Consensus 16 ~~vl~~i~L~v-~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~ 94 (248)
T COG1116 16 VEVLEDINLSV-EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVA 94 (248)
T ss_pred eEEeccceeEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhe
Confidence 57899999999 8899999999999999999999999652110 01 23444333222
Q ss_pred ---------------hHHHHHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1069 ---------------PVDRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1069 ---------------~~d~i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
....++..+|..+.-......+|++|++ ++.+.+++.+|.++|||||+...|.+-...+-..++
T Consensus 95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~ 174 (248)
T COG1116 95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174 (248)
T ss_pred ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH
Confidence 2334555666666666667778888875 667777899999999999988888887666655555
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+ +.++.+.|+||||||.+.|..+++ +|+++..+
T Consensus 175 ~-lw~~~~~TvllVTHdi~EAv~Lsd--Rivvl~~~ 207 (248)
T COG1116 175 R-LWEETRKTVLLVTHDVDEAVYLAD--RVVVLSNR 207 (248)
T ss_pred H-HHHhhCCEEEEEeCCHHHHHhhhC--EEEEecCC
Confidence 5 445568999999999999999999 88887663
No 35
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.9e-18 Score=174.61 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=109.9
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh--------------------cCccccccc---cc-----
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ--------------------VGADVPAEI---FE----- 1066 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--------------------~G~~vPa~~---~~----- 1066 (1288)
...|++|.. ..|++++|.||||+||||+||+|+.+.++.+ +|.. +.+. ++
T Consensus 17 AvrdVSF~a-e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl-~~e~glY~RlT~rE 94 (245)
T COG4555 17 AVRDVSFEA-EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL-FGERGLYARLTARE 94 (245)
T ss_pred hhhheeEEe-ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee-cCCcChhhhhhHHH
Confidence 578999998 8899999999999999999999998765433 2211 1000 01
Q ss_pred -cchHHH---------------HHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1067 -ISPVDR---------------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1067 -l~~~d~---------------i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
+.+|-+ +..+++..+.+......|+.+|++ ++.+.+++.+|+++|||||++|.|-.... ...
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r-~~~ 173 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRR-KFH 173 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHH-HHH
Confidence 111111 122344444445555566766654 56666789999999999997777666433 344
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.++.++.+ .|..+||+||.++.+..+|| +|+++|.|.++..|+
T Consensus 174 dfi~q~k~-egr~viFSSH~m~EvealCD--rvivlh~Gevv~~gs 216 (245)
T COG4555 174 DFIKQLKN-EGRAVIFSSHIMQEVEALCD--RVIVLHKGEVVLEGS 216 (245)
T ss_pred HHHHHhhc-CCcEEEEecccHHHHHHhhh--eEEEEecCcEEEcCC
Confidence 66666654 38899999999999999999 999999998887653
No 36
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=7.7e-17 Score=196.43 Aligned_cols=282 Identities=18% Similarity=0.156 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeCCceeeee-ccccccCCCCCcEEEE-----eeecCcEEEeChHHHHHHHHHHHHH
Q 000778 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLE-VPESLRGSVPRDYELR-----SSKKGFFRYWTPNIKKLLGELSQAE 926 (1288)
Q Consensus 853 ~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~-v~~~~~~~~p~~~~~~-----ss~~~~~ry~tp~l~~l~~~l~~~~ 926 (1288)
..||+++|+++.. .++.++|+||++. |.. ..|++. .-..++..|.... +...+.....
T Consensus 189 i~WLe~~L~~~~g-------tviiVSHDR~FLd~V~t-------~I~~ld~g~l~~y~Gny~~~~~~r--~~~~~~~~~~ 252 (530)
T COG0488 189 IEWLEDYLKRYPG-------TVIVVSHDRYFLDNVAT-------HILELDRGKLTPYKGNYSSYLEQK--AERLRQEAAA 252 (530)
T ss_pred HHHHHHHHHhCCC-------cEEEEeCCHHHHHHHhh-------heEEecCCceeEecCCHHHHHHHH--HHHHHHHHHH
Confidence 3688888875432 3677889999872 211 111111 1122233332222 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccce---ecCCC-CCCCCeEEEecCCCC
Q 000778 927 SEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPV---ILDSC-SNEEPYISAKSLGHP 1002 (1288)
Q Consensus 927 ~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~---~~~~~-~~~~~~l~i~~~rHP 1002 (1288)
.+..+...+-++.++.++......-.++-..+..|+-+.+-........ --+|. |.+.. .....++.+++....
T Consensus 253 ~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~--~~~~~~~~f~~~~~~~g~~vl~~~~~~~~ 330 (530)
T COG0488 253 YEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVE--EGKPLAFRFPPPGKRLGKLVLEFENVSKG 330 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhccccc--ccccceeeccCCcccCCCeeEEEeccccc
Confidence 2223333344666777777776666777778888887775322111110 01111 11111 012334444433222
Q ss_pred ccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc----------ccccccccc----c
Q 000778 1003 VLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA----------DVPAEIFEI----S 1068 (1288)
Q Consensus 1003 ~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~----------~vPa~~~~l----~ 1068 (1288)
+ ..++.+..+++|.+ .+|+.++|+||||+|||||||.|++..-.. .|. |+++....+ .
T Consensus 331 y------~~~~~l~~~~s~~i-~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 331 Y------DGGRLLLKDLSFRI-DRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred c------CCCceeecCceEEe-cCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCc
Confidence 1 12257999999999 789999999999999999999997633211 232 223322111 2
Q ss_pred hHHH---------------HHHhcCc-hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1069 PVDR---------------IFVRMGA-KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1069 ~~d~---------------i~~~ig~-~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+++. .+.+++. .+.+.....++| +|..++..+..++.+|.||||||| |+++|..++- .
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP---TNhLDi~s~~--a 477 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP---TNHLDIESLE--A 477 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC---CccCCHHHHH--H
Confidence 2222 2233332 233344556666 577788888888999999999999 9999988653 4
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
|+.....+..++||||||..++...+. ++..+..
T Consensus 478 Le~aL~~f~Gtvl~VSHDr~Fl~~va~--~i~~~~~ 511 (530)
T COG0488 478 LEEALLDFEGTVLLVSHDRYFLDRVAT--RIWLVED 511 (530)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHhhcc--eEEEEcC
Confidence 555556678899999999999999887 6655543
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.73 E-value=1.9e-17 Score=191.42 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=116.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+.+.
T Consensus 20 ~~~l~~vsl~i-~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 20 KLVVDGLSFHV-QRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVR 98 (306)
T ss_pred eEEEecceEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHH
Confidence 46899999999 78999999999999999999999985411 111235565431 22233
Q ss_pred HHH---------------------HHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~i---------------------~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+ +..++..+.......++|++| ++++.+.+++.+|+|||||||++|.|+..... .
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~-l 177 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL-M 177 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHH-H
Confidence 322 222333333333445666554 56777888899999999999999999986554 4
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.++ |+|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 178 ~~~l~~l~~~-g~till~sH~l~e~~~~~d--~i~il~~G~i~~~g~ 221 (306)
T PRK13537 178 WERLRSLLAR-GKTILLTTHFMEEAERLCD--RLCVIEEGRKIAEGA 221 (306)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 5677777654 8999999999999999998 999999999988775
No 38
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=8.7e-18 Score=174.49 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=123.1
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcC-cccccccc---cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVG-ADVPAEIF---EI 1067 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G-~~vPa~~~---~l 1067 (1288)
.+.|.||++|.+ .+|++++|.||||+||||.+-+|.|++ .-|++| .|+|++.. .+
T Consensus 16 kr~Vv~~Vsl~v-~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 16 KRKVVNDVSLEV-NSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CeeeeeeeeEEE-cCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 578999999999 899999999999999999999999865 236666 57787652 34
Q ss_pred chHHHHHHhcCchh-----------------------hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1068 SPVDRIFVRMGAKD-----------------------HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1068 ~~~d~i~~~ig~~d-----------------------~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
++.|.|..-+.... -..+...++| +|.+++-.+.++|.+|+++|||||++|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 45555443222111 0011112233 57777777777889999999999999999997
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
...| ..++.+|..+ |.-||++-|+...+..+++ +..+++.|.++.+|++
T Consensus 175 V~dI-q~iI~~L~~r-giGvLITDHNVREtL~i~d--RaYIi~~G~vla~G~p 223 (243)
T COG1137 175 VIDI-QRIIKHLKDR-GIGVLITDHNVRETLDICD--RAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHH-HHHHHHHHhC-CceEEEccccHHHHHhhhh--eEEEEecCeEEecCCH
Confidence 6655 4788899665 9999999999999999998 8999999999998864
No 39
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.72 E-value=2.8e-17 Score=189.96 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=116.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+++.
T Consensus 6 ~~~l~~vs~~i-~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKV-REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 46789999999 78999999999999999999999985411 111234554421 11222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFLTE-LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~~e-~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++..+|..+......+++|++ .++++.+.+++.+|++||||||++|.|+..... .
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~-l 163 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA-I 163 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH-H
Confidence 2 2334445544444455667754 456777788899999999999999999886554 4
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.++ |.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 164 ~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d--~v~~l~~G~i~~~g~ 207 (302)
T TIGR01188 164 WDYIRALKEE-GVTILLTTHYMEEADKLCD--RIAIIDHGRIIAEGT 207 (302)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 5677777654 8999999999999999998 899999999887764
No 40
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.72 E-value=2.4e-17 Score=176.25 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=116.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccc-----------ccccchHHHHHHhcCchhh
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-----------IFEISPVDRIFVRMGAKDH 1082 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~-----------~~~l~~~d~i~~~ig~~d~ 1082 (1288)
.++++++|.+ .+|++++|+||||+|||||||+|+|+.- +..|...... ...++++.+++..+|..+.
T Consensus 13 ~~l~~~~~~i-~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 13 TVLDDLSLSI-EAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 5788999998 7899999999999999999999998643 3344221110 1134555557778888777
Q ss_pred HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1083 IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1083 i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++.++++|++||+++.+..+++ +
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d--~ 167 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYAD--R 167 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--E
Confidence 766667777 555667888888999999999999999988765544 466666655447899999999999888888 8
Q ss_pred eEEeeeEEEEe
Q 000778 1162 VSLCHMACQVG 1172 (1288)
Q Consensus 1162 v~~~~~~~~~~ 1172 (1288)
+.+++.|.++.
T Consensus 168 ~~~l~~g~i~~ 178 (180)
T cd03214 168 VILLKDGRIVA 178 (180)
T ss_pred EEEEECCEEEe
Confidence 88888776553
No 41
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.72 E-value=2.9e-17 Score=192.13 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=116.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+.+.
T Consensus 54 ~~~l~~is~~i-~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 54 KAVVNGLSFTV-ASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 46899999999 78999999999999999999999985411 111235554421 22233
Q ss_pred HHH---------------------HHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~i---------------------~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+ +.+++..+.......++|++| ++++.+.+++.+|++||||||++|.|+.....+
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l- 211 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 211 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 322 223333333333455677555 456777788999999999999999998865544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.+. |.|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 212 ~~~l~~l~~~-g~tilisSH~l~e~~~~~d--~i~il~~G~i~~~g~ 255 (340)
T PRK13536 212 WERLRSLLAR-GKTILLTTHFMEEAERLCD--RLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 5677777654 8999999999999999999 999999999988775
No 42
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.6e-17 Score=175.79 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=127.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH------------------------HHhhcCcc------cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------ILAQVGAD------VP 1061 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~------------------------ilaq~G~~------vP 1061 (1288)
++.++.||+|.+ ..|++++|+||+|+|||||||+|.+++ +.+++|+. ||
T Consensus 16 ~~~aL~~Vnl~I-~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 16 GHQALKDVNLEI-NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CceeeeeEeEEe-CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 568999999999 789999999999999999999999854 23555532 33
Q ss_pred ccc-------cc----------cchH---H-----HHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1062 AEI-------FE----------ISPV---D-----RIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1062 a~~-------~~----------l~~~---d-----~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
..+ .. ++++ | ..+.++|..+...+..+++++ ++++++.+.+++.+|.++|.|||
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 221 01 1111 1 236688888888888899984 56678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+..||..... .+.+|..+.++.|.|+|+.-|+.+++..+++ +|+-+..|.++.+|.
T Consensus 175 vasLDp~~a~~-Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~--Riigl~~G~ivfDg~ 231 (258)
T COG3638 175 VASLDPESAKK-VMDILKDINQEDGITVIVNLHQVDLAKKYAD--RIIGLKAGRIVFDGP 231 (258)
T ss_pred ccccChhhHHH-HHHHHHHHHHHcCCEEEEEechHHHHHHHHh--hheEecCCcEEEeCC
Confidence 88888886554 4577888888889999999999999999999 999999999988874
No 43
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.71 E-value=8.9e-18 Score=193.36 Aligned_cols=174 Identities=19% Similarity=0.221 Sum_probs=122.7
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------hhcCcccccc
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------AQVGADVPAE 1063 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------aq~G~~vPa~ 1063 (1288)
+.|+|++.++-+- +..+..|++|++ .+|+++.|+||+||||||+||+|||+.-. .+.-..+|..
T Consensus 4 ~~l~i~~v~k~yg-------~~~av~~isl~i-~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-------DFTAVDDISLDI-KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-------CeeEEecceeee-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 4567776544332 468899999999 88999999999999999999999996532 1111224443
Q ss_pred ccccchHH---HHHHhcCchhhHhhc--------------------------------ccchH-HHHHHHHHHHHhCCCC
Q 000778 1064 IFEISPVD---RIFVRMGAKDHIMAG--------------------------------QSTFL-TELSETALMLSSATRN 1107 (1288)
Q Consensus 1064 ~~~l~~~d---~i~~~ig~~d~i~~~--------------------------------~Stf~-~e~~~~~~il~~a~~~ 1107 (1288)
.-.++++- .+|.+|.+.+|+.-+ .+.+| ++.++++.+.+++.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 33333221 244455555554333 23334 4566788899999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.+||||||.+..|..-...+. .-+..+.++.|.|+||+|||.+.+..+++ +|.+|+.|++...|++
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~giT~i~VTHDqeEAl~msD--rI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMR-KELKELQRELGITFVYVTHDQEEALAMSD--RIAVMNDGRIEQVGTP 221 (352)
T ss_pred chhhhcCcccchhHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcc--ceEEccCCceeecCCH
Confidence 999999994444444344443 44555667789999999999999999999 9999999999887753
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.9e-17 Score=178.44 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=110.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+
T Consensus 13 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTV-EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 35789999999 78999999999999999999999986421 011134454321 122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l-~ 170 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL-R 170 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 2 2233333333333345566 555667788888999999999999888888765544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++..+.++.+.++|++||+.+++..+++ +|..++.|.++.
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d--~v~~l~~G~i~~ 211 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQEEALALAD--RIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhcC--EEEEEECCEEEe
Confidence 66666655447899999999999888888 888888877654
No 45
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5.2e-17 Score=181.00 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDV-RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 35789999999 78999999999999999999999985411 111234554421 1
Q ss_pred cchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+++.+.+ +.++|..+......+.+| ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 2222222 223333333333345566 45567788888899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++.++++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 172 ~~~l-~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d--~v~~l~~G~i~~~g 219 (235)
T cd03261 172 SGVI-DDLIRSLKKELGLTSIMVTHDLDTAFAIAD--RIAVLYDGKIVAEG 219 (235)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhcC--EEEEEECCeEEEec
Confidence 5544 466666655447899999999999988888 89899888877655
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=6.9e-17 Score=178.20 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=113.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .+.+.
T Consensus 13 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 13 FEAVRGVSFRV-RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EEeeeceeEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 35789999999 78999999999999999999999986411 011124454421 11222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++..++..+.+......+| ++.++++.+.+++.+|+|+|||||++|.|+.....+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l- 170 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV- 170 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-
Confidence 2 22334444444444455566 566677888889999999999999888888765544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..++..+.++.++++|++||+.+.+..+++ ++.++..|.++..+
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 214 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCD--RVAIIDHGRIIAEG 214 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEEeC
Confidence 466666665457899999999999998888 88888888877654
No 47
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.71 E-value=4.5e-17 Score=174.84 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=121.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------------HHhhcCcccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------------ILAQVGADVPAE 1063 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~----------------------------ilaq~G~~vPa~ 1063 (1288)
+..+.+|++|++ ..|++++++||+||||||+||+|..++ ++-|+|.| |..
T Consensus 13 ~~~av~~v~l~I-~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF-Ph~ 90 (309)
T COG1125 13 NKKAVDDVNLTI-EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF-PHL 90 (309)
T ss_pred CceeeeeeeEEe-cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC-CCc
Confidence 467899999999 889999999999999999999999754 12333433 221
Q ss_pred c-----cccc------------hHHHHHHhcCch--hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1064 I-----FEIS------------PVDRIFVRMGAK--DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1064 ~-----~~l~------------~~d~i~~~ig~~--d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
. +.++ -.+.++..+|.. +...+..+.+| ++.+++..+.++|.+|.++|||||+...||..
T Consensus 91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~ 170 (309)
T COG1125 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170 (309)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhh
Confidence 1 1111 134455556654 34555566676 56667888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+-.. +..+.++.+.|++|||||++.|..+++ +|.+|..|.++..++
T Consensus 171 R~~lQ~e-~~~lq~~l~kTivfVTHDidEA~kLad--ri~vm~~G~i~Q~~~ 219 (309)
T COG1125 171 RKQLQEE-IKELQKELGKTIVFVTHDIDEALKLAD--RIAVMDAGEIVQYDT 219 (309)
T ss_pred HHHHHHH-HHHHHHHhCCEEEEEecCHHHHHhhhc--eEEEecCCeEEEeCC
Confidence 7776544 445778889999999999999999999 999999998876553
No 48
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.70 E-value=1.1e-16 Score=180.53 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=114.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCccccccccc---cchHH---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIFE---ISPVD--- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~~---l~~~d--- 1071 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.... ..+.+
T Consensus 25 ~~il~~isl~i-~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 25 RTVLNQLDLHI-PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHH
Confidence 46889999999 78999999999999999999999986421 0111244443211 12222
Q ss_pred ------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1072 ------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1072 ------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
.++..+|..+.+....+.+| ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~ 182 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM-QDLIESLWQQ 182 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHH
Confidence 23444555554445556676 455667788888999999999999888888765544 4566666554
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++++|++||+++++..+++ +|.+++.|.++..+
T Consensus 183 ~~~tviivsHd~~~~~~~~d--~i~~l~~G~i~~~~ 216 (257)
T PRK11247 183 HGFTVLLVTHDVSEAVAMAD--RVLLIEEGKIGLDL 216 (257)
T ss_pred cCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEeec
Confidence 57899999999999888888 88888888877654
No 49
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-15 Score=192.08 Aligned_cols=153 Identities=21% Similarity=0.200 Sum_probs=106.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------hcCccccccc-c----ccchH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------QVGADVPAEI-F----EISPV------- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------q~G~~vPa~~-~----~l~~~------- 1070 (1288)
..+.+|++|.+ .+|++++|+||||||||||||+|+|+.... .+ .|+|+.. . ...++
T Consensus 325 ~~il~~isl~i-~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-gy~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 325 RIILDSIKLNL-VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred eeeeccceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE-EEecCcchhhCCccchHHHHHHHhC
Confidence 56899999999 789999999999999999999999864210 12 2444431 0 01111
Q ss_pred --------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1071 --------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1071 --------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
..++.+++.. +......+++| +|.++++.+..++.+|.|||||||++|.|+.....+ .+.|. ..+
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l----~~~L~-~~~ 477 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL----TEALI-DFE 477 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHH-HcC
Confidence 1233444543 23445566777 455677778888999999999999777776644433 33332 235
Q ss_pred cEEEEEcCCchhhhhhcCCCceEEeeeEEEE-ecC
Q 000778 1141 CRGLFSTHYHRLAVDYKKDPRVSLCHMACQV-GNG 1174 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~-~~g 1174 (1288)
.|+|+||||.+++..+++ +|.+++.|.++ ..|
T Consensus 478 gtvi~vSHd~~~~~~~~d--~i~~l~~G~i~~~~g 510 (638)
T PRK10636 478 GALVVVSHDRHLLRSTTD--DLYLVHDGKVEPFDG 510 (638)
T ss_pred CeEEEEeCCHHHHHHhCC--EEEEEECCEEEEcCC
Confidence 699999999999999998 88888888765 444
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.70 E-value=9.4e-17 Score=179.74 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=112.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------------HhhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------------laq~G~~vPa~~~---~ 1066 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.- +.+...|+|+... .
T Consensus 15 ~~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNI-NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 45889999999 7899999999999999999999998531 0111234554321 1
Q ss_pred cchHHHH-----------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1067 ISPVDRI-----------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~~~d~i-----------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+++.+.+ +..+|..+.+......+| ++.++++.+.+++.+|++||||||+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2222222 233344433344445666 4556678888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 174 ~~LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 174 ASLDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYAD--RIVGLKAGEIVFDG 228 (243)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcC--eEEEEECCEEEecC
Confidence 88888755544 466777755447899999999999988888 88888888776554
No 51
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.70 E-value=8.2e-17 Score=176.63 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=111.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.|+|+... ..++.+
T Consensus 13 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 13 VTALDDLNLDI-ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeeceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 35788999999 789999999999999999999999864210 01124443321 112222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l-~ 170 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM-R 170 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 22334444444444455666 455567777888999999999999888888865544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..
T Consensus 171 ~~l~~~~~~~~~tvi~~sH~~~~~~~~~d--~i~~l~~g~~~~~ 212 (213)
T cd03301 171 AELKRLQQRLGTTTIYVTHDQVEAMTMAD--RIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcC--eEEEEECCEEEec
Confidence 56666665458899999999999888888 8888888876643
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5.9e-17 Score=178.75 Aligned_cols=157 Identities=20% Similarity=0.125 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCcccccccc---ccchHHH--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIF---EISPVDR-- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~---~l~~~d~-- 1072 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+... ..++.+.
T Consensus 17 ~~il~~vs~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDISLSV-EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEeceeEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 36789999999 78999999999999999999999986421 011134554321 1222222
Q ss_pred -------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1073 -------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1073 -------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
++.+++..+.+....+.+| ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~-~~~l 174 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL-QEEL 174 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH-HHHH
Confidence 2333444444444455666 455677888888999999999999888888866554 4566
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEee--eEEEEec
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH--MACQVGN 1173 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~--~~~~~~~ 1173 (1288)
..+.++.+.++|++||+.+.+..+++ ++.+++ .|.++..
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~~~G~i~~~ 215 (220)
T cd03293 175 LDIWRETGKTVLLVTHDIDEAVFLAD--RVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhCC--EEEEEECCCCEEEEE
Confidence 66654447899999999998888888 888887 5776654
No 53
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.70 E-value=9.4e-17 Score=187.61 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=119.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+++.-. .+.-.++|+... .
T Consensus 18 ~~~L~~vsl~i-~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 36899999999 78999999999999999999999985410 111234444321 1
Q ss_pred cchHH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.++.+ .++..+|..+......+.+| ++.++++.+.+++++|++||||||++|.|+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 12222 23444555555555566777 455678888889999999999999888888865
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ ..++..+.++.|.|+|++||+++.+..+++ +|.+++.|.++..|.
T Consensus 177 ~~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d--~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 177 QSI-LELLKEINRRLGLTILLITHEMDVVKRICD--CVAVISNGELIEQGT 224 (343)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 554 477777876668999999999999999998 999999999987764
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.70 E-value=1.3e-16 Score=174.43 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=111.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+
T Consensus 13 ~~~l~~~~~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHV-KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 36889999998 78999999999999999999999985310 111235554421 122222
Q ss_pred H-----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1072 R-----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1072 ~-----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
. ++.+++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELIL 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHH
Confidence 2 2334444444444445555 556677888888999999999999888888765544 46677
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
++.+ .+.++|++||+.+++..+++ ++..++.|.++.
T Consensus 171 ~~~~-~~~tii~~tH~~~~~~~~~d--~v~~l~~g~i~~ 206 (208)
T cd03268 171 SLRD-QGITVLISSHLLSEIQKVAD--RIGIINKGKLIE 206 (208)
T ss_pred HHHH-CCCEEEEEcCCHHHHHHhcC--EEEEEECCEEEe
Confidence 7765 47899999999999988888 888888887654
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.2e-16 Score=177.82 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=113.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~l 1067 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+
T Consensus 19 ~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSV-PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 6788999999 78999999999999999999999985410 111234554421 12
Q ss_pred chHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
++.+. ++.+++..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 22332 2333444444444455666 5556788888899999999999998888888655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+ +.++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 178 ~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 223 (233)
T cd03258 178 SI-LALLRDINRELGLTIVLITHEMEVVKRICD--RVAVMEKGEVVEEG 223 (233)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEec
Confidence 44 456666655447899999999999988888 88888888877654
No 56
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.70 E-value=9.9e-17 Score=185.48 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=114.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .+++.
T Consensus 17 ~~~l~~vsl~i-~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 17 KVVVNDLSFTI-ARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVR 95 (303)
T ss_pred eEEEcceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHH
Confidence 46899999999 78999999999999999999999985411 111235554421 12333
Q ss_pred HHH---------------------HHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DRI---------------------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~i---------------------~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+ +..++..+.......++|+ +.++++.+.+++.+|++||||||++|.|+.....+
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 174 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 174 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 332 2223333333334456664 45567778888999999999999999988865544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+.++ |.++|++||+++.+..+++ ++.+++.|.++..|+
T Consensus 175 ~~~l~~~~~~-g~til~~sH~~~~~~~~~d--~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 175 WERLRSLLAR-GKTILLTTHFMEEAERLCD--RLCVLESGRKIAEGR 218 (303)
T ss_pred HHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 4667777554 8899999999999999898 899999998887664
No 57
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=6.9e-17 Score=175.38 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------------hhcCcccccccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------------AQVGADVPAEIF-- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------------aq~G~~vPa~~~-- 1065 (1288)
..++++++|.+ .+|++++|+||+||||||||.+|+++.-. .++| ||.+...
T Consensus 18 ~~~L~~v~l~i-~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEI-EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLL 95 (226)
T ss_pred eEecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCC
Confidence 46899999999 89999999999999999999999985411 1222 2322211
Q ss_pred -ccch---------------------HHHHHHhcCchhhHh-hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1066 -EISP---------------------VDRIFVRMGAKDHIM-AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1066 -~l~~---------------------~d~i~~~ig~~d~i~-~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
.+++ ...++.++|..+... ...+.+| +|.++++.+.+++.+|++||.||||...|.
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 1111 223445556666655 5566676 567788888999999999999999666666
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
..+..+ ..++..+.++.|.|+|+||||.+++.. ++ ++..++.|.
T Consensus 176 ~t~~~V-~~ll~~~~~~~g~tii~VTHd~~lA~~-~d--r~i~l~dG~ 219 (226)
T COG1136 176 KTAKEV-LELLRELNKERGKTIIMVTHDPELAKY-AD--RVIELKDGK 219 (226)
T ss_pred HHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHh-CC--EEEEEeCCe
Confidence 656654 467777877779999999999999884 55 777777775
No 58
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=8.2e-17 Score=173.31 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=116.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----cC----------------ccccccc-----ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----VG----------------ADVPAEI-----FEI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----~G----------------~~vPa~~-----~~l 1067 (1288)
.+.|+|+|++ .+|++++|+|++|||||||.|+|+|+.-..+ .| -.|+++. ...
T Consensus 21 ~~l~~VS~~i-~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNVSLEI-ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcceeEEe-cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 5899999999 8999999999999999999999999652211 01 1222221 111
Q ss_pred ch-------------------HHHHHHhcCchhhHhh-cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH--H
Q 000778 1068 SP-------------------VDRIFVRMGAKDHIMA-GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD--G 1124 (1288)
Q Consensus 1068 ~~-------------------~d~i~~~ig~~d~i~~-~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D--g 1124 (1288)
++ ...++..+|....... ....|+ +++++++.+.+++.+|++||+||| |+.+| .
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp---tSaLD~si 176 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP---TSALDVSV 176 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc---hhhhcHHH
Confidence 11 2234455555443332 334455 678899999999999999999999 66666 4
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++..+.+|.++.++.+.|.||+|||..++..+|+ +|.+|..|.+++.+
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd--Ri~Vm~~G~ivE~~ 224 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLALVEHMCD--RIAVMDNGQIVEIG 224 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh--heeeeeCCeEEEee
Confidence 5556788888888889999999999999999999 99999999988764
No 59
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=6.1e-17 Score=173.18 Aligned_cols=152 Identities=23% Similarity=0.284 Sum_probs=117.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcC-ccccccccccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVG-ADVPAEIFEISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G-~~vPa~~~~l~~~d 1071 (1288)
..++.+|+|.+ ..|++++|+||||+|||||||+|+|++-. +..| +|||.. .
T Consensus 16 ~~~L~gvsl~v-~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPeg-------R 87 (237)
T COG0410 16 IQALRGVSLEV-ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEG-------R 87 (237)
T ss_pred eeEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccc-------c
Confidence 57899999999 88999999999999999999999996521 2222 344432 3
Q ss_pred HHHHhcCchhhHhhc-------------------------------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1072 RIFVRMGAKDHIMAG-------------------------------QSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1072 ~i~~~ig~~d~i~~~-------------------------------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+||.++.+++|+..+ ..++| +|.+.++...+++.+|+|+|||||+-|+
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL 167 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc
Confidence 345555554444432 23444 4666677778889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.=...|. .++..|.++.+.|||+|.++..++..++| +.+++..|.++.+|.
T Consensus 168 aP~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaD--r~yvle~Griv~~G~ 220 (237)
T COG0410 168 APKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIAD--RGYVLENGRIVLSGT 220 (237)
T ss_pred CHHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhC--EEEEEeCCEEEEecC
Confidence 999665554 67777876667899999999999999999 888999999988774
No 60
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=188.48 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=117.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hh-cCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQ-VGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq-~G~~vPa~~~---~l~~~d 1071 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.-. .+ .-.|||+..+ .+++.+
T Consensus 17 ~~~l~~vsl~i-~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 17 TQVIKGIDLDV-ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRE 95 (356)
T ss_pred CEEEeeeeEEE-cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHH
Confidence 46889999999 78999999999999999999999996421 00 1124444321 122222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++..+|..+.+.....++| ++.++++.+.+++.+|+|||||||++|.|+.-...+.
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~- 174 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR- 174 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 23344455544444555666 5666788888899999999999998888877655544
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D--~i~vl~~G~i~~~g~ 218 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEAMTLAD--RVVVMNGGVAEQIGT 218 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEEECC
Confidence 55666766668999999999999999998 999999999987764
No 61
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.69 E-value=8.9e-17 Score=176.95 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=105.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 17 ~~il~~~s~~i-~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSI-EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEE-cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 46789999999 78999999999999999999999985411 111234443321
Q ss_pred ccchHH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+.+ .++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 112211 23334444444444445566 45566788888999999999999999988875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
... ...++..+.++.++++|++||+.+.+. +++ ++.+++.|
T Consensus 176 ~~~-l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d--~v~~l~~G 216 (218)
T cd03255 176 GKE-VMELLRELNKEAGTTIVVVTHDPELAE-YAD--RIIELRDG 216 (218)
T ss_pred HHH-HHHHHHHHHHhcCCeEEEEECCHHHHh-hhc--EEEEeeCC
Confidence 444 456677776534789999999999886 777 77777655
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.5e-16 Score=177.81 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .
T Consensus 14 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSI-NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 46889999999 78999999999999999999999985411 011234554321 1
Q ss_pred cchHHHH-----------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1067 ISPVDRI-----------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~~~d~i-----------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+++.+.+ +..++..+.+......++ ++.++++.+.+++.+|++||||||+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 2222222 222333333333344565 5666778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.++.|+++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 173 ~~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 227 (241)
T cd03256 173 ASLDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAREYAD--RIVGLKDGRIVFDG 227 (241)
T ss_pred ccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEeec
Confidence 88888755544 466777765458899999999999988888 88888888776554
No 63
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.69 E-value=1.1e-16 Score=175.98 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=107.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~l 1067 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+
T Consensus 17 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 17 PALDNLNFHI-TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 5889999999 78999999999999999999999985310 111234554421 12
Q ss_pred chHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
++.+. ++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 22222 2333444444444445566 5666788888899999999999998888887665
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
.+. .++..+.+. ++++|++||+.+++..+++ ++..++.|
T Consensus 176 ~l~-~~l~~~~~~-~~tii~vsH~~~~~~~~~d--~i~~l~~G 214 (216)
T TIGR00960 176 DIM-RLFEEFNRR-GTTVLVATHDINLVETYRH--RTLTLSRG 214 (216)
T ss_pred HHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 544 566666554 8899999999999988887 77777655
No 64
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=1e-16 Score=174.95 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hhcCccccccc----cccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQVGADVPAEI----FEISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq~G~~vPa~~----~~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+.. ...++.+
T Consensus 13 ~~~l~~v~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDL-YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 35788999998 78999999999999999999999985410 11123455442 1112222
Q ss_pred H-----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1072 R-----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1072 ~-----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIR 170 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHH
Confidence 2 2333444433333445566 455667777888999999999999999998765544 46677
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
.+.++ +.++|++||+++.+..+++ ++..++.|.+
T Consensus 171 ~~~~~-~~tii~~sH~~~~~~~~~d--~i~~l~~G~i 204 (205)
T cd03226 171 ELAAQ-GKAVIVITHDYEFLAKVCD--RVLLLANGAI 204 (205)
T ss_pred HHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEE
Confidence 77554 8899999999999988888 7888877754
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.6e-16 Score=180.74 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=113.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+...
T Consensus 37 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDV-REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 45788999999 78999999999999999999999986411 011234444321
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+.+. ++..+|..+.+......++ ++.++++.+.+++.+|++||||||++|.|+..
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 1122222 2334444444444455666 55566788888899999999999998888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++.|.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 196 ~~~l-~~~l~~~~~~~g~tiii~tH~~~~~~~~~d--~v~~l~~G~i~~~g 243 (269)
T cd03294 196 RREM-QDELLRLQAELQKTIVFITHDLDEALRLGD--RIAIMKDGRLVQVG 243 (269)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 5544 466666655447899999999999888888 88888888776554
No 66
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.69 E-value=1.7e-16 Score=176.99 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=110.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhc-Ccccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQV-GADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~-G~~vPa~~~---~l~ 1068 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+. -.|+|+... .+.
T Consensus 13 ~~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 13 LVALDDVSFSV-RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEEecCceEEe-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 35788999998 78999999999999999999999986411 011 134554321 122
Q ss_pred hHHHH-------------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1069 PVDRI-------------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1069 ~~d~i-------------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+.+.+ +..+|....+....++++ ++.++++.+.+++.+|+++|||||+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22222 222333333333344555 4556678888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+..... .+.++..+.+ .++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 172 ~~LD~~~~~~-l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d--~i~~l~~G~i~~~~ 225 (236)
T cd03219 172 AGLNPEETEE-LAELIRELRE-RGITVLLVEHDMDVVMSLAD--RVTVLDQGRVIAEG 225 (236)
T ss_pred ccCCHHHHHH-HHHHHHHHHH-CCCEEEEEecCHHHHHHhCC--EEEEEeCCEEEeec
Confidence 8888875554 4466666655 48899999999999988888 88889888877654
No 67
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-16 Score=173.44 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=108.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------hhcCcccccccc---ccchHHH-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------AQVGADVPAEIF---EISPVDR- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------aq~G~~vPa~~~---~l~~~d~- 1072 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+... ...-.|+|+... .+++.+.
T Consensus 13 ~~~l~~v~~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSV-EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 35788999998 78999999999999999999999986421 011124444321 1222222
Q ss_pred --------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1073 --------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1073 --------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
++..+|....+......++ ++.++++.+++++.+|+++|||||++|.|+.....+ ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~-~~~ 170 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL-KDV 170 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHH
Confidence 2223333333333334455 556667788888999999999999999998765544 356
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
++.+.++ ++++|++||+.+++..+++ ++..++.|.++.
T Consensus 171 l~~~~~~-~~tii~~sH~~~~~~~~~d--~i~~l~~g~i~~ 208 (210)
T cd03269 171 IRELARA-GKTVILSTHQMELVEELCD--RVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHC-CCEEEEECCCHHHHHHhhh--EEEEEeCCEEEe
Confidence 6666554 7899999999999888887 888888776653
No 68
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.69 E-value=1.9e-16 Score=176.12 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------h-hcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------A-QVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------a-q~G~~vPa~~~---~l~ 1068 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+.-. . +.-.|+|+... .++
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 13 RKVVNGVSLSV-KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EEeeccceeEe-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 35789999998 78999999999999999999999986411 0 11124444321 112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 2222 2223333333333344565 55566788888999999999999988888876554
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+ ..++..+.+. +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 ~-~~~l~~~~~~-~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 215 (232)
T cd03218 172 I-QKIIKILKDR-GIGVLITDHNVRETLSITD--RAYIIYEGKVLAEG 215 (232)
T ss_pred H-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCeEEEEe
Confidence 4 4667777654 7899999999999888888 88888888776544
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.69 E-value=1.3e-16 Score=189.62 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=117.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... ++.-.+||+... .+++
T Consensus 16 ~~vL~~vs~~i-~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 16 TTVLDGVDLSV-REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred EEEEEeeEEEE-CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 46899999999 78999999999999999999999985411 111234554321 1222
Q ss_pred HH-------------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VD-------------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d-------------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+ .++..+|..+........+| +|.++++.+.+++.+|++||||||++|.|+..
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 22 22334444444444455666 56667788888999999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+ ..+|..+.++ +.|+|++||+++++..+++ ++.+++.|.++..|.
T Consensus 175 ~~~l-~~lL~~l~~~-g~TIIivsHdl~~~~~~ad--rii~l~~G~iv~~G~ 222 (402)
T PRK09536 175 QVRT-LELVRRLVDD-GKTAVAAIHDLDLAARYCD--ELVLLADGRVRAAGP 222 (402)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 5544 4777778654 7899999999999999999 999999999987765
No 70
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.68 E-value=1.5e-16 Score=174.17 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=107.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc----ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF----EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~----~l~ 1068 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ...
T Consensus 14 ~~il~~vs~~i-~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTI-KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 35788999998 78999999999999999999999985411 111234554421 112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..++..+.+....+.++ ++.++++.+.+++.+|+|+|||||++|.|+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 2222 2333444444444456666 45566788888899999999999988888886555
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+. .++..+.++ ++++|++||+.+.+..+++ ++.+++.|
T Consensus 173 ~~-~~l~~~~~~-~~tvi~~sH~~~~~~~~~d--~i~~l~~G 210 (211)
T cd03225 173 LL-ELLKKLKAE-GKTIIIVTHDLDLLLELAD--RVIVLEDG 210 (211)
T ss_pred HH-HHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 44 566666655 8899999999999988887 77666543
No 71
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=186.98 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=116.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .
T Consensus 18 ~~il~~vsl~i-~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHI-PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 46889999999 78999999999999999999999986410 111234554321 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+++.+. ++..+|..+.+....+.+| ++.++++.+.+++.+|++||||||++|.|+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 222222 2333444444444456666 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ +.+|..+.++.|.++|++||+++.+..+++ +|.+++.|.++..|.
T Consensus 177 ~~l-~~~L~~l~~~~g~tiilvtH~~~~i~~~~d--~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 177 RSI-LELLKDINRELGLTIVLITHEMDVVKRICD--RVAVIDAGRLVEQGT 224 (343)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 544 466777765558899999999999998898 899999998887653
No 72
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.68 E-value=1.6e-16 Score=186.82 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=118.6
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------H----hhcCccccccccc-
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------L----AQVGADVPAEIFE- 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------l----aq~G~~vPa~~~~- 1066 (1288)
+..+++|++|++ .+|++++|+||||||||||||+|+|+.- + .+.-.|||+...-
T Consensus 5 ~~~~l~~vs~~i-~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAI-AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEE-cCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 346789999999 7899999999999999999999998541 0 1122355544321
Q ss_pred --cchHHH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1067 --ISPVDR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1067 --l~~~d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+++.+. ++..+|....+......+|+ +.++++.+.+++.+|++||||||++|.|+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 222222 33444554445555666775 455677888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
-...+. .++..+.+..+.|+||+||+++.+..+++ +|.++..|.++..|+
T Consensus 164 ~r~~l~-~~l~~l~~~~~~Tii~vTHd~~ea~~~~d--rI~vl~~G~iv~~g~ 213 (363)
T TIGR01186 164 IRDSMQ-DELKKLQATLQKTIVFITHDLDEAIRIGD--RIVIMKAGEIVQVGT 213 (363)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEeeCC
Confidence 766655 44555655558899999999999999898 999999999987764
No 73
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-16 Score=182.39 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=115.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccc----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEI----FE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~----~~ 1066 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.- +.+...|||+.. ..
T Consensus 20 ~~~l~~vs~~i-~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 20 KKALDNVNIEI-EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 36899999999 7899999999999999999999998531 111224566542 11
Q ss_pred cchHHH---------------------HHHhcCch--hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1067 ISPVDR---------------------IFVRMGAK--DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~--d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
..+.+. ++..+|.. +........++ ++.++++.+.+++.+|++||||||++|.|+.
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 222222 23334443 22333445566 4556677778889999999999999999887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.... .+.++..+.++.|.|+|++||+++++..+++ +|.+++.|.++..|
T Consensus 179 ~~~~-l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d--rv~~l~~G~i~~~g 227 (287)
T PRK13637 179 GRDE-ILNKIKELHKEYNMTIILVSHSMEDVAKLAD--RIIVMNKGKCELQG 227 (287)
T ss_pred HHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 5554 4567777766558899999999999988888 99999999887665
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.68 E-value=2.3e-16 Score=173.73 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=110.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCccccccc---cccchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEI---FEISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~---~~l~~~d 1071 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+.. ..+++.+
T Consensus 19 ~il~~~sl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTV-KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 5788999998 78999999999999999999999986421 01112444432 1122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ .
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~ 176 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL-R 176 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-H
Confidence 2 2334444444444445555 566678888888999999999999888888765544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++..+.++ ++++|++||+.+.+..+++ ++..++.|.++.
T Consensus 177 ~~l~~~~~~-~~tii~~tH~~~~~~~~~d--~i~~l~~G~i~~ 216 (218)
T cd03266 177 EFIRQLRAL-GKCILFSTHIMQEVERLCD--RVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHC-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEee
Confidence 666666554 8899999999999888888 888888776654
No 75
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.8e-16 Score=186.07 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=123.3
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------- 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------- 1054 (1288)
+.|.+++..+-+- +..++++++|++ .+|++++|+||||||||||||+|+|+.-..
T Consensus 5 ~~l~~~~l~~~~~-------~~~~l~~isl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 5 NFVVLKNITKRFG-------SNTVIDNLNLTI-KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred cEEEEEeEEEEEC-------CeEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 3566666554331 246789999999 789999999999999999999999864210
Q ss_pred -hcCcccccccc---ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1055 -QVGADVPAEIF---EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1055 -q~G~~vPa~~~---~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
..-.+|++..+ .+.+.+. ++..+|..+........+| ++.++++.+.+++.+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 01124444332 1222332 2233344333333445555 56677888889999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+|||||++|.|+.-...+. ..+..+.++.+.|+|++|||.+.+..+++ +|.+++.|.++..|+
T Consensus 157 lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD--~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSD--TVIVMNKGKIMQIGS 220 (351)
T ss_pred EEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 99999998888887666544 56666766668999999999999999998 999999999987764
No 76
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.68 E-value=2.1e-16 Score=176.35 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCccccccc----cccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... .+...|+|+.. ..+++
T Consensus 34 ~~il~~vs~~i-~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTI-EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 56899999999 78999999999999999999999986411 01112444221 11222
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 222 1222233333333344555 455667777888999999999999888888866654
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
. .++..+.++.++++|++||+++++..+++ ++..++.|.++.
T Consensus 193 ~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~ 234 (236)
T cd03267 193 R-NFLKEYNRERGTTVLLTSHYMKDIEALAR--RVLVIDKGRLLY 234 (236)
T ss_pred H-HHHHHHHhcCCCEEEEEecCHHHHHHhCC--EEEEEeCCEEEe
Confidence 4 56666655557899999999999988888 888888776654
No 77
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.68 E-value=1.8e-16 Score=187.39 Aligned_cols=173 Identities=15% Similarity=0.194 Sum_probs=124.3
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------h
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------A 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------a 1054 (1288)
+.|.+++.+.-+- +..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .
T Consensus 13 ~~L~l~~l~~~~~-------~~~~l~~vsl~i-~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-------GKEVISNLDLTI-NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-------CeEEEeeeEEEE-eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 4577776654331 235789999999 78999999999999999999999996421 0
Q ss_pred h-cCcccccccc---ccchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1055 Q-VGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1055 q-~G~~vPa~~~---~l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
+ ...+|++..+ .+++.+.| +..+|..+.+.....+++ ++.++++.+.+++.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 1123444332 22333332 333344444444445565 56677888888999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+|||||++|.|..-...+ ...|..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 165 llLLDEP~s~LD~~~r~~l-~~~L~~l~~~~g~tiI~vTHd~~ea~~laD--ri~vl~~G~i~~~g~ 228 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQM-QNELKALQRKLGITFVFVTHDQEEALTMSD--RIVVMRDGRIEQDGT 228 (375)
T ss_pred EEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 9999999888888765544 466666766668999999999999999998 999999999987664
No 78
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.4e-16 Score=178.04 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=112.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.|+|+... .+++.+
T Consensus 15 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 15 FVALDDVSLDI-PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EEeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 35789999999 789999999999999999999999964210 01124444321 122222
Q ss_pred H-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 R-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 ~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
. ++..+|..+.......+++ ++.++++.+.+++.+|++||||||++|.|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 2 2233333333333345565 5566778888889999999999999999887655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+ ..++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 174 ~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 219 (239)
T cd03296 174 EL-RRWLRRLHDELHVTTVFVTHDQEEALEVAD--RVVVMNKGRIEQVG 219 (239)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCeEEEec
Confidence 44 466777765447899999999999888888 88888888877654
No 79
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7.4e-17 Score=178.15 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=119.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh---------------------cCccccccc----ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ---------------------VGADVPAEI----FEI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---------------------~G~~vPa~~----~~l 1067 (1288)
..+.+|++|++ .+|++++|+||||||||||+++++|+..... .-.+|.+.. ..-
T Consensus 17 ~~~l~~v~~~i-~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEI-EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 47889999999 7899999999999999999999998653221 011121110 000
Q ss_pred ch---------------------HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SP---------------------VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~---------------------~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.+ ++..+..+|..+.......++| +|+++++.+-.+|.+|.++||||||+|.|+.-..
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 11 2233445566666556666666 6777888888889999999999999999988544
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....++..|....|.|+|++||+++.+..+++ ++.+++.|.++.+|.
T Consensus 176 -~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad--~v~vl~~G~i~~~g~ 222 (235)
T COG1122 176 -ELLELLKKLKEEGGKTIIIVTHDLELVLEYAD--RVVVLDDGKILADGD 222 (235)
T ss_pred -HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCC--EEEEEECCEEeecCC
Confidence 44578888877767899999999999999999 999999998877763
No 80
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.68 E-value=1.6e-16 Score=186.84 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=117.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..++++++|++ ..|++++|+||||||||||||+|+|+.-. .+...+|++..+ .+++.+
T Consensus 17 ~~~l~~vs~~i-~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~e 95 (353)
T TIGR03265 17 FTALKDISLSV-KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred eEEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHH
Confidence 35789999998 78999999999999999999999996421 011234444432 122222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|..-...+.
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~- 174 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLR- 174 (353)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 23334444444444455566 5666788888999999999999998888877655544
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..|..+.++.+.|+|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 175 ~~L~~l~~~~~~tvi~vTHd~~ea~~l~d--~i~vl~~G~i~~~g~ 218 (353)
T TIGR03265 175 TEIRQLQRRLGVTTIMVTHDQEEALSMAD--RIVVMNHGVIEQVGT 218 (353)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 55666666668999999999999999998 999999999987764
No 81
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.6e-16 Score=177.50 Aligned_cols=158 Identities=16% Similarity=0.282 Sum_probs=112.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcC-ccccccc---cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVG-ADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G-~~vPa~~---~~l~ 1068 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.+ .|+|+.. ..++
T Consensus 18 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 18 LLAVNNVNLEV-REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred EEEEEeeeeEE-cCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 46889999999 78999999999999999999999986411 1112 2344432 1122
Q ss_pred hHHH------------------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEE
Q 000778 1069 PVDR------------------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVV 1111 (1288)
Q Consensus 1069 ~~d~------------------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvL 1111 (1288)
+.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2221 1223344443444455566 55667788888899999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1112 LDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1112 LDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||||++|.|+.....+ +.+|..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 177 lDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 236 (255)
T PRK11300 177 LDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISD--RIYVVNQGTPLANG 236 (255)
T ss_pred EcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCC--EEEEEECCeEEecC
Confidence 9999888888865544 466777765457899999999999988888 88888888776544
No 82
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.68 E-value=1.8e-16 Score=183.05 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=114.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------HhhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------laq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|++|.+ .+|++++|+||||+|||||||+|+|+.. ..+.-.|+|+... .+++.
T Consensus 15 ~~~l~~is~~i-~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 15 QNALDEVSFEA-QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVR 93 (301)
T ss_pred EEEEEEeEEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHH
Confidence 46899999999 7899999999999999999999998631 1112234554421 12222
Q ss_pred HH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+. ++..+|..+......+.+++ +.++++.+.+++.+|+++|||||++|.|+..... .
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~-l 172 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE-I 172 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH-H
Confidence 22 23334444434444556664 4456777888899999999999999999885544 4
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++..+. + +.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 173 ~~~l~~~~-~-~~tiii~sH~l~~~~~~~d--~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 173 RNVIKNIG-K-DKTIILSTHIMQEVEAICD--RVIIINKGKIVADKK 215 (301)
T ss_pred HHHHHHhc-C-CCEEEEEcCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 56677774 3 6899999999999999998 999999999987764
No 83
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.68 E-value=2.6e-16 Score=174.79 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .+.
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 13 SHILRGVSLEV-PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred eEEecceeeEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 35789999999 78999999999999999999999986411 111235555432 112
Q ss_pred hHHHH------------------HHhcC-chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1069 PVDRI------------------FVRMG-AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1069 ~~d~i------------------~~~ig-~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+.+.+ ...++ ..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l- 170 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI- 170 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH-
Confidence 22222 11111 1112222334455 455667788888999999999999888888865544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++..+.++.++|+|++||+++.+..+++ ++.+++.|.++..+
T Consensus 171 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d--~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 171 GRVIRRLRAEGGMAILLVEQYLDFARELAD--RYYVMERGRVVASG 214 (230)
T ss_pred HHHHHHHHHcCCcEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 466666655447899999999999988888 88888888877655
No 84
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.68 E-value=3e-16 Score=176.49 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------hhcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------AQVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------aq~G~~vPa~~ 1064 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+..
T Consensus 16 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEV-KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 35889999999 78999999999999999999999985310 01123444432
Q ss_pred c---ccchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1065 F---EISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1065 ~---~l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. ...+.+.+ +.++|..+......+.++ ++.++++.+.+++.+|++||||||++|
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1 12222322 222333333333345555 556677888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.|+.....+ ..++..+.++ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 175 LD~~~~~~l-~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 226 (250)
T PRK11264 175 LDPELVGEV-LNTIRQLAQE-KRTMVIVTHEMSFARDVAD--RAIFMDQGRIVEQG 226 (250)
T ss_pred CCHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 888755544 4667777654 8899999999999988888 88899888877654
No 85
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.68 E-value=2.2e-16 Score=178.92 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=113.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------------------q~G~~vPa~~ 1064 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-.. +...|+|+..
T Consensus 17 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 17 HQALHAVDLNI-HHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred eEEEecceEEE-cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 46889999999 789999999999999999999999865210 0113444432
Q ss_pred c---ccchHHH-----------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEE
Q 000778 1065 F---EISPVDR-----------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVV 1111 (1288)
Q Consensus 1065 ~---~l~~~d~-----------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvL 1111 (1288)
. .+++.+. ++.++|..+.+......++ ++.++++.+.+++.+|+|||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1122222 2333444444444455566 56667788888899999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1112 LDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1112 LDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||||++|.|+.....+ ..++..+.++.|.++|++||+++++..+++ ++.+++.|.++..|
T Consensus 176 lDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~~~~d--~i~~l~~g~i~~~g 235 (262)
T PRK09984 176 ADEPIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYALRYCE--RIVALRQGHVFYDG 235 (262)
T ss_pred ecCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 9999888888866554 466666765447899999999999888888 88888888766544
No 86
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.6e-16 Score=175.28 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=114.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhc-----------CccccccccccchH---HHHHHhcCc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV-----------GADVPAEIFEISPV---DRIFVRMGA 1079 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~-----------G~~vPa~~~~l~~~---d~i~~~ig~ 1079 (1288)
.+.+||+|.+ ..|++++|+|||||||||+||+|||+.-..+- -..++.....++++ -.+|..|++
T Consensus 16 ~a~~di~l~i-~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtV 94 (345)
T COG1118 16 GALDDISLDI-KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV 94 (345)
T ss_pred cccccceeee-cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchH
Confidence 4566899999 78999999999999999999999996522110 00122222233322 124556666
Q ss_pred hhhHhhcc---------------------------------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1080 KDHIMAGQ---------------------------------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1080 ~d~i~~~~---------------------------------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.|||.-|+ ..++ ++.++++.+.++|..|++||||||+...|..-..
T Consensus 95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred HhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 66665543 1222 4566788888899999999999997777666444
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.+ ..-|..+.++.|++++|+|||.+.+..+++ +|++|+.|.+...|+.
T Consensus 175 ~l-r~wLr~~~~~~~~ttvfVTHD~eea~~lad--rvvvl~~G~Ieqvg~p 222 (345)
T COG1118 175 EL-RRWLRKLHDRLGVTTVFVTHDQEEALELAD--RVVVLNQGRIEQVGPP 222 (345)
T ss_pred HH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcc--eEEEecCCeeeeeCCH
Confidence 43 355666777789999999999999999999 9999999998876653
No 87
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.68 E-value=5.9e-17 Score=185.66 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=113.3
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----cC-------------cccccccc---ccchHHHH
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----VG-------------ADVPAEIF---EISPVDRI 1073 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----~G-------------~~vPa~~~---~l~~~d~i 1073 (1288)
+.++++|.+ ..|++++|+||||||||||||+|||+.-... .| .+|++..+ .+++++.|
T Consensus 18 ~l~~i~l~i-~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 18 VLKDVNLDI-EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 899999999 7899999999999999999999999652110 01 12333221 22333322
Q ss_pred ---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH--HHHH
Q 000778 1074 ---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ--AIAE 1129 (1288)
Q Consensus 1074 ---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~--aia~ 1129 (1288)
...+++.+.+....+.++ ++.++++...+++.+|+++||||| ++.+|.. ....
T Consensus 97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP---lSnLDa~lR~~mr 173 (338)
T COG3839 97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP---LSNLDAKLRVLMR 173 (338)
T ss_pred hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc---hhHhhHHHHHHHH
Confidence 223344455555556666 566788888899999999999999 6666632 2233
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+..|.++.+.|+|++|||...+..+++ +|.+++.|.+..-|+
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq~EAmtlad--ri~Vm~~G~i~Q~g~ 217 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQVEAMTLAD--RIVVMNDGRIQQVGT 217 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCHHHHHhhCC--EEEEEeCCeeeecCC
Confidence 56666888889999999999999999999 999999998887664
No 88
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=187.65 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=115.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|||+... .+++.+
T Consensus 16 ~~vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 16 VVISKDINLDI-HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 35789999999 78999999999999999999999986421 001124554421 122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..+|..+.+.....++| ++.++++.+.+++.+|+|||||||++|.|+.....+ .
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l-~ 173 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-R 173 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-H
Confidence 2 2334444444444455666 566678888889999999999999888888755544 3
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+|..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|.
T Consensus 174 ~~L~~l~~~~g~tvI~vTHd~~~~~~~~d--~i~vl~~G~i~~~g~ 217 (369)
T PRK11000 174 IEISRLHKRLGRTMIYVTHDQVEAMTLAD--KIVVLDAGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 56666765558899999999999998898 999999999887654
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.68 E-value=2.1e-16 Score=173.47 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=105.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .
T Consensus 15 ~~il~~is~~i-~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHI-RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 35889999999 78999999999999999999999986310 111234444321 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.++.+. ++..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 222222 2233344433334445566 556677888889999999999999888888865
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
..+. .++..+.++ +.++|++||+++.+..+++ ++.+++.|
T Consensus 174 ~~l~-~~l~~~~~~-~~tii~~tH~~~~~~~~~d--~i~~l~~G 213 (214)
T TIGR02673 174 ERIL-DLLKRLNKR-GTTVIVATHDLSLVDRVAH--RVIILDDG 213 (214)
T ss_pred HHHH-HHHHHHHHc-CCEEEEEeCCHHHHHHhcC--EEEEecCC
Confidence 5544 566666554 7899999999999988887 77666543
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2e-16 Score=180.38 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=114.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~ 1068 (1288)
..+.+|++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. ...+
T Consensus 18 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSI-PEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 35899999999 78999999999999999999999985411 11123455432 1112
Q ss_pred hHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+.+ +..+|..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 22222 223343333333445566 45566778888899999999999999988886665
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+ ..++..+.++ |+|+|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 177 l-~~~l~~~~~~-g~tili~tH~~~~~~~~~d--~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 177 L-MEILDRLHNQ-GKTVIVATHDVDLAAEWAD--QVIVLKEGRVLAEGD 221 (274)
T ss_pred H-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 4 4667677655 8999999999999988888 899999998877653
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.67 E-value=3.3e-16 Score=172.67 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++.
T Consensus 15 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNV-YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 46788999999 78999999999999999999999986411 011124444321 11222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++..++..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l- 172 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI- 172 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH-
Confidence 2 22333444443344445565 566678888889999999999999888888755544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..++..+.+ ++++|++||+++++..+++ ++.+++.|.++..+
T Consensus 173 ~~~l~~~~~--~~tii~~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 214 (220)
T cd03263 173 WDLILEVRK--GRSIILTTHSMDEAEALCD--RIAIMSDGKLRCIG 214 (220)
T ss_pred HHHHHHHhc--CCEEEEEcCCHHHHHHhcC--EEEEEECCEEEecC
Confidence 456666643 4899999999999988888 88888888877655
No 92
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.67 E-value=2.5e-16 Score=185.22 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=116.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+.-.. ..-.||++..+ .+++.+
T Consensus 15 ~~~l~~isl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 15 TQVLNDISLDI-PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred eEEEEEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH
Confidence 35889999999 789999999999999999999999964110 01124444321 112222
Q ss_pred H-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 R-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 ~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
. ++..++..+........++ ++.++++.+.+++.+|+|+|||||++|.|+....
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 2 2333444444444445566 4556688888899999999999998888888666
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+. .++..+.++.++|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 174 ~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~D--ri~vl~~G~i~~~g~ 220 (353)
T PRK10851 174 ELR-RWLRQLHEELKFTSVFVTHDQEEAMEVAD--RVVVMSQGNIEQAGT 220 (353)
T ss_pred HHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 544 56667766668999999999999999998 999999999887764
No 93
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.9e-16 Score=181.39 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=114.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------------------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------------------- 1053 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------------------- 1053 (1288)
.+++|++|.+ .+|++++|+||||||||||||+|+|+...
T Consensus 21 ~~l~~vsl~i-~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEI-NQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEE-eCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 5899999999 78999999999999999999999986411
Q ss_pred ----hhcCccccccc----cccchHH---------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHH
Q 000778 1054 ----AQVGADVPAEI----FEISPVD---------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLS 1102 (1288)
Q Consensus 1054 ----aq~G~~vPa~~----~~l~~~d---------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~ 1102 (1288)
.+.-.|||+.. ....+.+ .++..+|.. +.......++| ++.++++.+..
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 00113555531 1112222 223344443 33444455666 45566788888
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++.+|+|+|||||++|.|+.... ....++.++.+. |+|+|++||+++.+..+++ +|.+++.|.++..|.
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~-~l~~~l~~l~~~-g~tiiivtHd~~~~~~~ad--rv~vl~~G~i~~~g~ 248 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVK-EILEIFDNLNKQ-GKTIILVTHDLDNVLEWTK--RTIFFKDGKIIKDGD 248 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 89999999999999999887544 445777777654 8999999999999988898 999999998887653
No 94
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.67 E-value=5.8e-16 Score=160.05 Aligned_cols=157 Identities=22% Similarity=0.232 Sum_probs=117.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------------H-hhcCccccccc---
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------L-AQVGADVPAEI--- 1064 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------------l-aq~G~~vPa~~--- 1064 (1288)
+..+++||+|.+ .+|+++-||||+|||||||||+|.+..- + .|+|. |.++.
T Consensus 14 g~~aL~~vs~~i-~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv-VFQD~rLL 91 (223)
T COG2884 14 GREALRDVSFHI-PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGV-VFQDFRLL 91 (223)
T ss_pred CchhhhCceEee-cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeee-Eeeecccc
Confidence 456899999999 8999999999999999999999997441 1 23442 22221
Q ss_pred cccchH---------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1065 FEISPV---------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1065 ~~l~~~---------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
...+++ ...+..+|..+....-.+.+| +|.++++.+.+.+..|.|||.|||+-..||.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 111222 234556666666666667777 6888899999999999999999997777777
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
-...|. .+++.+.. .|.|||++|||.+++..+.. ++..+..|+++.+.
T Consensus 172 ~s~~im-~lfeeinr-~GtTVl~ATHd~~lv~~~~~--rvl~l~~Grl~~d~ 219 (223)
T COG2884 172 LSWEIM-RLFEEINR-LGTTVLMATHDLELVNRMRH--RVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHH-HHHHHHhh-cCcEEEEEeccHHHHHhccC--cEEEEeCCEEEecc
Confidence 554443 56677744 59999999999999998866 88888999887653
No 95
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.67 E-value=2e-16 Score=186.40 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=116.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-cC-------------------cccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VG-------------------ADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-~G-------------------~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ ..|++++|+||||||||||||+|+|+..... .| .+|++..+ .+++
T Consensus 18 ~~~l~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 18 NTVLDDLSLEI-EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred eEEEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 36899999999 7899999999999999999999998643211 02 23333321 1122
Q ss_pred HH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+ .++..+|..+.......++| ++.++++.+.+++.+|+|||||||++|.|+.....+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 22 22333444444444445555 556678888889999999999999888888765554
Q ss_pred HHHHHHHHHhcc-CcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKV-QCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~-~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
. ..|..+.++. |.|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 177 ~-~~l~~l~~~~~g~til~vTHd~~ea~~l~d--ri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 177 R-EEIAALHEELPELTILCVTHDQDDALTLAD--KAGIMKDGRLAAHGE 222 (362)
T ss_pred H-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 4 5666676665 7899999999999999998 999999999987764
No 96
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.67 E-value=3.4e-16 Score=171.63 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=106.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc---cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~---~l 1067 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+
T Consensus 13 ~~~l~~~s~~i-~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTV-KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 35788999998 78999999999999999999999986411 111234554321 12
Q ss_pred chHHH----------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1068 SPVDR----------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1068 ~~~d~----------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
++.+. ++.++|....+.....+++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 22222 2333444433444445566 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
.. ...++..+.+. +.++|++||+.+.+..+++ ++.+++.|
T Consensus 172 ~~-l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d--~i~~l~~g 211 (213)
T cd03262 172 GE-VLDVMKDLAEE-GMTMVVVTHEMGFAREVAD--RVIFMDDG 211 (213)
T ss_pred HH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 44 44667777653 7899999999999988888 77776655
No 97
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=4.8e-16 Score=168.55 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=113.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcCccccccc-----ccc--------------chH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVGADVPAEI-----FEI--------------SPV 1070 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G~~vPa~~-----~~l--------------~~~ 1070 (1288)
....||+|.+ ++|.+++++||||+||||+||++.|+.+.. .++.++|... ..+ +..
T Consensus 38 ~AVqdisf~I-P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEI-PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeec-CCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3679999999 899999999999999999999999977542 2334555431 011 100
Q ss_pred H------HH---------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D------RI---------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d------~i---------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
| .| -.-++....+......+| +|..+.-.+.++..+|.+|+|||||-|.|..-..+|.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 0 01 111223333333334444 5555666677789999999999998888877655554
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+....++.+|||+.+|||+.-+..+|+ +|..++.|.++.+|+
T Consensus 197 -~Flke~n~~~~aTVllTTH~~~di~~lc~--rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 197 -EFLKEYNEERQATVLLTTHIFDDIATLCD--RVLLIDQGQLVFDGT 240 (325)
T ss_pred -HHHHHHHHhhCceEEEEecchhhHHHhhh--heEEeeCCcEeeccc
Confidence 44555556679999999999999999999 999999999999875
No 98
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.5e-16 Score=179.54 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=113.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI----F 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~----~ 1065 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. .
T Consensus 21 ~~l~~vsl~i-~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 21 KGLDNISFEL-EEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred cceeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 5889999999 78999999999999999999999985311 01123555432 1
Q ss_pred ccchHHHH---------------------HHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVDRI---------------------FVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d~i---------------------~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
..++.+.+ +..+|.. +.......++|+ +.++++.+.+++.+|++||||||++|.|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 12223322 2333443 233344456664 555677778889999999999999999987
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+ ..++..+.++ |.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 180 ~~~~l-~~~l~~l~~~-g~tvlivsH~~~~~~~~~d--~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 180 GRKEM-MQLFKDYQKA-GHTVILVTHNMDDVAEYAD--DVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 65544 5677777554 8899999999999999998 999999998876653
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.67 E-value=3.4e-16 Score=172.72 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------h-hcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------A-QVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------a-q~G~~vPa~~~--- 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. . +.-.|+|+...
T Consensus 18 ~~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSI-GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 35889999999 78999999999999999999999985310 0 11235554421
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
..++.+. ++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 1222222 2333444443444445666 45566788888899999999999988888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
...+ ..++..+.++.+.++|++||+++++.. ++ ++.+++.|.++
T Consensus 177 ~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~-~d--~v~~l~~G~i~ 220 (221)
T TIGR02211 177 AKII-FDLMLELNRELNTSFLVVTHDLELAKK-LD--RVLEMKDGQLF 220 (221)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHhh-cC--EEEEEeCCEec
Confidence 5544 456666655457899999999998765 45 78888777543
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.67 E-value=5.2e-16 Score=170.32 Aligned_cols=151 Identities=23% Similarity=0.227 Sum_probs=107.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCcccccccc-----ccchHHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIF-----EISPVDR 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~-----~l~~~d~ 1072 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+.
T Consensus 12 ~~~l~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 12 HPVLEDVSFEV-KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EEeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 35788999999 78999999999999999999999986411 111235554321 1122222
Q ss_pred -------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1073 -------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1073 -------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
++..++..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2333444444444556666 45566777788899999999999988888886655
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+. .++..+.+ .+.++|++||+++.+..+++ ++.+++.+
T Consensus 171 l~-~~l~~~~~-~~~tvi~~sH~~~~~~~~~d--~i~~l~~~ 208 (213)
T cd03235 171 IY-ELLRELRR-EGMTILVVTHDLGLVLEYFD--RVLLLNRT 208 (213)
T ss_pred HH-HHHHHHHh-cCCEEEEEeCCHHHHHHhcC--EEEEEcCc
Confidence 54 55666655 47899999999999988888 77777654
No 101
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.8e-16 Score=174.26 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=110.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---------------------HhhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---------------------laq~G~~vPa~~~---~l~ 1068 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.- ..+.-.|+|+... .++
T Consensus 18 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 18 IQALHEVSLHI-NQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred ceeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 46899999999 7899999999999999999999998531 1111234454321 122
Q ss_pred hHHHH-------------------HHhc-CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1069 PVDRI-------------------FVRM-GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1069 ~~d~i-------------------~~~i-g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
+.+.+ +..+ +..+.......+++ ++.++++.+.+++.+|+++|||||++|.|+.....
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~- 175 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ- 175 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH-
Confidence 23322 1112 12222222334455 55667788888899999999999999988875444
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++ ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 219 (237)
T PRK11614 176 IFDTIEQLREQ-GMTIFLVEQNANQALKLAD--RGYVLENGHVVLED 219 (237)
T ss_pred HHHHHHHHHHC-CCEEEEEeCcHHHHHhhCC--EEEEEeCCEEEeeC
Confidence 44667777654 8899999999998888888 88888888877655
No 102
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=3.7e-16 Score=172.78 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=124.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH------------------------HhhcCccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEI---- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i------------------------laq~G~~vPa~~---- 1064 (1288)
..+++||+|++ .+|++++|+|.+|+|||||+|+|.++-- -.++|+ +++..
T Consensus 19 ~~al~~vsL~I-~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGM-IFQhFnLLs 96 (339)
T COG1135 19 VTALDDVSLEI-PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGM-IFQHFNLLS 96 (339)
T ss_pred eeeeccceEEE-cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccE-Eeccccccc
Confidence 35789999999 8999999999999999999999997431 122332 22211
Q ss_pred --------------ccc------chHHHHHHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1065 --------------FEI------SPVDRIFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1065 --------------~~l------~~~d~i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.. .-+..++..+|..|......+.+|++. ++++.+.++|++|++||.||+|+..||.-
T Consensus 97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 000 113345677888888888888888554 56778888999999999999977777776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+|. ++|..+.++.|.|++++||.++.+..+|+ +|.+|+.|.++..|+
T Consensus 177 T~sIL-~LL~~In~~lglTIvlITHEm~Vvk~ic~--rVavm~~G~lvE~G~ 225 (339)
T COG1135 177 TQSIL-ELLKDINRELGLTIVLITHEMEVVKRICD--RVAVLDQGRLVEEGT 225 (339)
T ss_pred HHHHH-HHHHHHHHHcCCEEEEEechHHHHHHHhh--hheEeeCCEEEEecc
Confidence 66664 77888888889999999999999999999 999999999998874
No 103
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.67 E-value=3.8e-16 Score=173.20 Aligned_cols=153 Identities=17% Similarity=0.100 Sum_probs=108.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---~ 1066 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .
T Consensus 24 ~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGVELVV-KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEeccEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 4889999999 78999999999999999999999986410 011234554421 1
Q ss_pred cchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.++.+.+ +..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 2233332 223343333334445565 566677888888999999999999999988765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
..+ ..++..+.++.+.++|++||+++++.. ++ ++.+++.|.++
T Consensus 183 ~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~-~d--~i~~l~~g~i~ 225 (228)
T PRK10584 183 DKI-ADLLFSLNREHGTTLILVTHDLQLAAR-CD--RRLRLVNGQLQ 225 (228)
T ss_pred HHH-HHHHHHHHHhcCCEEEEEecCHHHHHh-CC--EEEEEECCEEE
Confidence 544 466666755557899999999998754 66 78888877664
No 104
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4e-16 Score=174.62 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cch-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISP- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~- 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+.... ..+
T Consensus 16 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 16 KEILKDISVKF-EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 45789999999 78999999999999999999999985411 0112344443211 011
Q ss_pred ----------------HHHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1070 ----------------VDRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1070 ----------------~d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+..++.+++.. +........++ ++.++++.+.+++.+|+++|||||++|.|+..... ...+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~-l~~~ 173 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI-IEEL 173 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH-HHHH
Confidence 12234445553 23344445566 56667788888899999999999988888875443 4466
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+..+.++.|.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 214 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGD--YTAFLNKGILVEYA 214 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCC--EEEEEeCCEEEEeC
Confidence 666655448899999999999988888 88899888776544
No 105
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.67 E-value=2.3e-16 Score=175.27 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=108.9
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------------cccccccc---ccchHHHH----
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------------ADVPAEIF---EISPVDRI---- 1073 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------------~~vPa~~~---~l~~~d~i---- 1073 (1288)
++++|++ .+|++++|+||||+|||||||+|+|+... ..| .++|+... .+++.+.+
T Consensus 2 ~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 2 KGVNLTI-QQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 5788888 78999999999999999999999986421 111 24444321 12223322
Q ss_pred -------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1074 -------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1074 -------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
+.++|..+.+....+.+| ++.++++.+.+++.+|+++|||||++|.|+.....+. .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~ 158 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELM 158 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHH
Confidence 233333333333445566 5556778888889999999999999999988665544 5555
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+.++.++++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 159 ~~~~~~~~tii~~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 159 QIWEEHRVTVLMVTHDVDEALLLSD--RVVMLTNGPAANIG 197 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcC--EEEEEeCCcEeccc
Confidence 6655457899999999999988888 89999988887654
No 106
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.8e-16 Score=178.43 Aligned_cols=158 Identities=20% Similarity=0.148 Sum_probs=114.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
.++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+.. ...++
T Consensus 18 ~~l~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 18 EALNNINFIA-PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred ceeeEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 5889999999 78999999999999999999999985310 11123455432 11122
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++.++|..+.+......++ ++.++++.+.+++.+|++||||||++|.|+.....
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~- 175 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE- 175 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH-
Confidence 222 2333344444444445566 45566778888899999999999988888875554
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++.++|+|++||+++++..+++ +|.+++.|.++..|+
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d--rv~~l~~G~i~~~g~ 221 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMAD--YIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCeEEEECC
Confidence 3466767765558899999999999988888 899999998887653
No 107
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.2e-16 Score=176.92 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=118.2
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------- 1053 (1288)
.|.+++....+ .+..++++++|++ .+|++++|+||||+|||||||+|+|+.-.
T Consensus 11 ~l~i~~l~~~~-------~~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 11 TFALRNVSFRV-------PGRTLLHPLSLTF-PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred eEEEeeEEEEE-------CCEEEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 45666554322 1246899999999 78999999999999999999999986410
Q ss_pred -hhcCcccccccc---ccchHHH-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHh
Q 000778 1054 -AQVGADVPAEIF---EISPVDR-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1054 -aq~G~~vPa~~~---~l~~~d~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~ 1103 (1288)
.+...|+|+... .+.+.+. ++.+++..+.+......++ ++.++++.+.++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 011234444311 1122222 2333444433333445566 556677888889
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.+|+|+|||||++|.|+.....+ ..++..+.++.++++|++||+++++..+++ +|.+++.|.++..+
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~-~~~l~~l~~~~~~tiii~sH~~~~i~~~~d--~i~~l~~G~i~~~~ 230 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDV-LALVHRLSQERGLTVIAVLHDINMAARYCD--YLVALRGGEMIAQG 230 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCeEEEec
Confidence 999999999999888888755543 466666765458899999999999988888 88888888776544
No 108
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.7e-16 Score=176.49 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=112.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. ...-.|+|+... ...+
T Consensus 20 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 20 YTVAENLTVEI-PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred EEEeeecceEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 46899999999 78999999999999999999999986410 011124444321 1122
Q ss_pred HHH-------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDR-------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~-------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 222 2233344433344445566 55667788888899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. .+|..+.++.++++|++||+++.+..+++ ++..++.|.++..+
T Consensus 179 ~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~g 226 (265)
T PRK10253 179 QIDLL-ELLSELNREKGYTLAAVLHDLNQACRYAS--HLIALREGKIVAQG 226 (265)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 66544 56666655457899999999999999898 88888888766543
No 109
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.66 E-value=4.4e-16 Score=171.87 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=108.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
.+.++++|++ .+|++++|+|||||||||||++|+|+.-. .+.-.|+|+... .+++
T Consensus 14 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 14 QILFGVSLTV-PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eEeeeeeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 5788999998 78999999999999999999999985411 111234444321 1122
Q ss_pred HHHH-------------------HHhc-CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1070 VDRI-------------------FVRM-GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1070 ~d~i-------------------~~~i-g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
.+.+ +..+ +..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l- 171 (222)
T cd03224 93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI- 171 (222)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-
Confidence 2222 1112 12222222334455 455667778888999999999999999888765544
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++..+.+ .++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 ~~~l~~~~~-~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 214 (222)
T cd03224 172 FEAIRELRD-EGVTILLVEQNARFALEIAD--RAYVLERGRVVLEG 214 (222)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHhcc--EEEEeeCCeEEEeC
Confidence 456666655 47899999999999988888 88888888776554
No 110
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.66 E-value=5.1e-16 Score=173.58 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=112.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc---cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~---~l 1067 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+
T Consensus 14 ~~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNI-DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 35789999999 78999999999999999999999985410 011234444321 11
Q ss_pred chHHH----------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1068 SPVDR----------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1068 ~~~d~----------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+.+. ++.++|..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 22222 2333444444444455666 556667888888999999999999999988765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+. .++..+.++ +.++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 173 ~~l~-~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 218 (240)
T PRK09493 173 HEVL-KVMQDLAEE-GMTMVIVTHEIGFAEKVAS--RLIFIDKGRIAEDG 218 (240)
T ss_pred HHHH-HHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEeeC
Confidence 5544 566667554 7899999999999988888 88889888877654
No 111
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.66 E-value=5.3e-16 Score=176.50 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .
T Consensus 20 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 20 RCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 46889999999 78999999999999999999999986411 111234554421 1
Q ss_pred cchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+.+.+ +.++|..+......+.++ ++.++++.+.+++.+|++||||||++|.|+..
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 2223322 222333333333345566 45556777778899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++.|+++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 179 ~~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d--~v~~l~~G~i~~~g 226 (269)
T PRK11831 179 MGVL-VKLISELNSALGVTCVVVSHDVPEVLSIAD--HAYIVADKKIVAHG 226 (269)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhhC--EEEEEECCEEEEeC
Confidence 5544 456666655447899999999999988888 88888888776554
No 112
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.7e-16 Score=171.27 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=106.3
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH----
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR---- 1072 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~---- 1072 (1288)
+++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++.+.
T Consensus 16 ~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTF-AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 888988 78999999999999999999999986421 001124444321 1122222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~ 173 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLD 173 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 2333343333333345566 4556677778889999999999998888888666544 56666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+.++.++++|++||+++.+..+++ ++.+++.|.++.
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQ--RVVFLDNGRIAA 209 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhC--EEEEEECCEEee
Confidence 655458899999999999988888 888888887654
No 113
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3e-16 Score=177.12 Aligned_cols=157 Identities=18% Similarity=0.109 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------------cccccccc---ccchHH--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------------ADVPAEIF---EISPVD-- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------------~~vPa~~~---~l~~~d-- 1071 (1288)
..+.+|++|.+ .+|++++|+||||||||||||+|+|+... ..| .|+|+... ..++.+
T Consensus 14 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 14 KPALEDINLTL-ESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred eeeEeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHH
Confidence 36789999999 78999999999999999999999986421 111 24444321 112222
Q ss_pred -------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1072 -------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1072 -------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
.++.++|..+.+......++ ++.++++.+.+++.+|++||||||++|.|+.....+ ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~ 170 (255)
T PRK11248 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTL 170 (255)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHH
Confidence 22334444443344455666 455667888888999999999999888888765544 456
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee--eEEEEecC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH--MACQVGNG 1174 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~--~~~~~~~g 1174 (1288)
|..+.++.|+++|++||+.+.+..+++ ++.+++ .|.++..+
T Consensus 171 L~~~~~~~g~tviivsH~~~~~~~~~d--~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 171 LLKLWQETGKQVLLITHDIEEAVFMAT--ELVLLSPGPGRVVERL 213 (255)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEeCCCcEEEEEe
Confidence 666644448899999999999988888 788887 47666543
No 114
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.66 E-value=4.2e-16 Score=171.05 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=105.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~l 1067 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+
T Consensus 15 ~~l~~~sl~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 15 AALDGINISI-SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 5788999998 78999999999999999999999985310 111234554321 11
Q ss_pred chHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
++.+. ++.++|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 22222 2333344433333445566 4556678888889999999999998888887655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
.+ ..++..+.++ ++++|++||+.+.+..+++ ++.+++.|
T Consensus 174 ~~-~~~l~~~~~~-~~tiiivtH~~~~~~~~~d--~i~~l~~G 212 (214)
T cd03292 174 EI-MNLLKKINKA-GTTVVVATHAKELVDTTRH--RVIALERG 212 (214)
T ss_pred HH-HHHHHHHHHc-CCEEEEEeCCHHHHHHhCC--EEEEEeCC
Confidence 44 4566666554 7899999999999988887 77666554
No 115
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.8e-16 Score=171.28 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=106.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-HhhcCcccccc-------ccccch---HHHHHHhcCchh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVGADVPAE-------IFEISP---VDRIFVRMGAKD 1081 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-laq~G~~vPa~-------~~~l~~---~d~i~~~ig~~d 1081 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.. .+..|...-.. ...+++ ...++..+...+
T Consensus 20 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYV-KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHH
Confidence 45789999998 7899999999999999999999998642 12333211000 001111 112333344455
Q ss_pred hHhhcc--cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchh-hhhhc
Q 000778 1082 HIMAGQ--STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL-AVDYK 1157 (1288)
Q Consensus 1082 ~i~~~~--Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l-~~~~~ 1157 (1288)
++.... ..++ +|.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+.+. ++++|++||+++. +...+
T Consensus 99 ~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiiivtH~~~~~~~~~~ 176 (192)
T cd03232 99 ALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLADS-GQAILCTIHQPSASIFEKF 176 (192)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHHc-CCEEEEEEcCChHHHHhhC
Confidence 554321 1565 566677888888999999999999999988765544 4667777554 8899999999984 56667
Q ss_pred CCCceEEeee-EEEEe
Q 000778 1158 KDPRVSLCHM-ACQVG 1172 (1288)
Q Consensus 1158 ~~~~v~~~~~-~~~~~ 1172 (1288)
+ ++..++. |.++.
T Consensus 177 d--~i~~l~~~g~i~~ 190 (192)
T cd03232 177 D--RLLLLKRGGKTVY 190 (192)
T ss_pred C--EEEEEcCCCeEEe
Confidence 7 7877776 66654
No 116
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.66 E-value=3e-16 Score=165.14 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=100.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccc-c-cccchHHHHHHhcCchhhHhhcccchH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-I-FEISPVDRIFVRMGAKDHIMAGQSTFL 1091 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~-~-~~l~~~d~i~~~ig~~d~i~~~~Stf~ 1091 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.. ...|...-.. . ......+..-..++. ...++
T Consensus 14 ~vl~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS 84 (163)
T cd03216 14 KALDGVSLSV-RRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAM-------VYQLS 84 (163)
T ss_pred EEEeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEE-------EEecC
Confidence 5788999999 7899999999999999999999998643 2233221110 0 011111111111211 11155
Q ss_pred -HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1092 -TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1092 -~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++ +.++|++||+++.+..+++ ++..++.|.+
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sh~~~~~~~~~d--~~~~l~~g~i 160 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERL-FKVIRRLRAQ-GVAVIFISHRLDEVFEIAD--RVTVLRDGRV 160 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEE
Confidence 566678888889999999999999888888765544 4566666554 7899999999998888887 7877777765
Q ss_pred E
Q 000778 1171 V 1171 (1288)
Q Consensus 1171 ~ 1171 (1288)
+
T Consensus 161 ~ 161 (163)
T cd03216 161 V 161 (163)
T ss_pred E
Confidence 4
No 117
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.66 E-value=4.8e-16 Score=173.41 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=110.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------h-------hcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------A-------QVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------a-------q~G~~vPa~~~---~l~~~ 1070 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. . +...|+|+... ...+.
T Consensus 14 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 14 RRALDDVSFTV-RPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 46889999999 78999999999999999999999986411 0 11234454321 12222
Q ss_pred HH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 DR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 22 2233344333334445566 5566778888899999999999999999988666554
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++..+.++.++++|++||+++.+.. ++ ++.+++.|.++..+
T Consensus 173 -~~l~~~~~~~~~tiii~sH~~~~~~~-~d--~i~~l~~G~i~~~~ 214 (236)
T TIGR03864 173 -AHVRALCRDQGLSVLWATHLVDEIEA-DD--RLVVLHRGRVLADG 214 (236)
T ss_pred -HHHHHHHHhCCCEEEEEecChhhHhh-CC--EEEEEeCCeEEEeC
Confidence 56666654447899999999999864 66 88888888766543
No 118
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.9e-16 Score=169.22 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=108.7
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------HHhhcCccc--------
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------ILAQVGADV-------- 1060 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~----------------------ilaq~G~~v-------- 1060 (1288)
+++.|+.||+..+ ++|+.++|+|||||||||||+++++-. +-..+|..-
T Consensus 42 ~gk~iL~~isW~V-~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 42 NGKKILGDLSWQV-NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred CCEeeccccceee-cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 4689999999999 889999999999999999999999722 112222110
Q ss_pred ccc----------ccccch------------HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1061 PAE----------IFEISP------------VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1061 Pa~----------~~~l~~------------~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+.. .+.+++ ...++..+|+..-..+...++| +|.+++-.+.+++.+|.|||||||+.
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 100 011111 1234455666655555666666 45555556667899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhc-cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHK-VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~-~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|..-...+ ...+..++.. .+.++|||||+.+.+....+ ++..+..|.++..|
T Consensus 201 GLDl~~re~l-l~~l~~~~~~~~~~~ll~VtHh~eEi~~~~t--h~lll~~g~v~~~g 255 (257)
T COG1119 201 GLDLIAREQL-LNRLEELAASPGAPALLFVTHHAEEIPPCFT--HRLLLKEGEVVAQG 255 (257)
T ss_pred cCChHHHHHH-HHHHHHHhcCCCCceEEEEEcchhhcccccc--eEEEeeCCceeecc
Confidence 8888754433 3455555432 35689999999998877666 67777777666543
No 119
>PRK10908 cell division protein FtsE; Provisional
Probab=99.66 E-value=7.2e-16 Score=170.34 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=110.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .
T Consensus 15 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHM-RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 36789999999 78999999999999999999999985410 111234554321 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+. ++.+++..+.+....+.++ ++.++++.+.+++.+|+|+|||||++|.|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 122222 2333444443444445666 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
..+. .++..+.++ +.++|++||+++++..+++ ++..++.|.++.
T Consensus 174 ~~l~-~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~ 217 (222)
T PRK10908 174 EGIL-RLFEEFNRV-GVTVLMATHDIGLISRRSY--RMLTLSDGHLHG 217 (222)
T ss_pred HHHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEcc
Confidence 5444 566666554 7899999999999998888 888888887654
No 120
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.2e-16 Score=184.60 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=121.2
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------- 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------- 1054 (1288)
+.|.+++.+..+- +..++++++|++ .+|++++|+||||||||||||+|+|+.-..
T Consensus 18 ~~l~l~~v~~~~~-------~~~~l~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSFD-------GQHAVDDVSLTI-YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEEC-------CEEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 3466666554331 236889999999 789999999999999999999999964210
Q ss_pred -hcCcccccccc---ccchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1055 -QVGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1055 -q~G~~vPa~~~---~l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
+.-.+|++..+ .+++.+.+ +..++..+........++ ++.++++.+.+++.+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01124444322 22333333 222333332233334455 56677888889999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|||||||++|.|..-...+. ..+..+.++.+.|+|++||+.+.+..+++ ++.+++.|.++..|+
T Consensus 170 lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~laD--ri~vl~~G~i~~~g~ 233 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQ-LEVVDILERVGVTCVMVTHDQEEAMTMAG--RIAIMNRGKFVQIGE 233 (377)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEEeCCEEEEEcC
Confidence 99999998888887665554 44445555568999999999999999998 999999999887764
No 121
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.66 E-value=5.9e-16 Score=174.36 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=111.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------------hhcCcc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------------AQVGAD 1059 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------------aq~G~~ 1059 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+.-.+
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSV-AAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 35789999999 78999999999999999999999985411 111224
Q ss_pred cccccc---ccchHHH----------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEe
Q 000778 1060 VPAEIF---EISPVDR----------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1060 vPa~~~---~l~~~d~----------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLD 1113 (1288)
+|+... ..++.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 443321 1122222 2233344333333445565 5666788888889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||++|.|+.....+ ..++..+.++.+.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 EP~~~LD~~~~~~l-~~~l~~~~~~~~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~g 229 (252)
T TIGR03005 172 EVTSALDPELVGEV-LNVIRRLASEHDLTMLLVTHEMGFAREFAD--RVCFFDKGRIVEQG 229 (252)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 99888888755544 456666655458899999999999888888 88888888877654
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=6e-16 Score=169.57 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=107.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
.+.++++|++ .+| +++|+||||+||||||++|+|+... .+.-.|+|+... .+.+.+
T Consensus 14 ~~l~~vs~~i-~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 14 RALDGVSLTL-GPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEcceeEEE-cCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 5788999999 668 9999999999999999999985410 111234554421 122222
Q ss_pred H---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 R---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
. ++..+|..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~ 170 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF-R 170 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 2 2223343333333344555 566678888889999999999999888888755544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++.++.+ +.++|++||+++++..+++ ++.+++.|.++.
T Consensus 171 ~~l~~~~~--~~tii~vsH~~~~~~~~~d--~i~~l~~g~i~~ 209 (211)
T cd03264 171 NLLSELGE--DRIVILSTHIVEDVESLCN--QVAVLNKGKLVF 209 (211)
T ss_pred HHHHHHhC--CCEEEEEcCCHHHHHHhCC--EEEEEECCEEEe
Confidence 66777754 4899999999999988888 888888887654
No 123
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.66 E-value=4.2e-16 Score=173.18 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=108.7
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---hcC-------------------cccccccc-----cc
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---QVG-------------------ADVPAEIF-----EI 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---q~G-------------------~~vPa~~~-----~l 1067 (1288)
+.+|++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..| .|+|+... .+
T Consensus 1 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSL-KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 357899998 789999999999999999999999975320 111 23443321 01
Q ss_pred chHHH---------------------HHHhcCch---hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1068 SPVDR---------------------IFVRMGAK---DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1068 ~~~d~---------------------i~~~ig~~---d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
.+.+. ++.+++.. +.+......++ ++.++++.+++++.+|+++|||||++|.|+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 11111 12222332 12233345555 5666788888889999999999998888887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ ..++..+.++.++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 160 ~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 160 NQARV-LKLLRELRQLFGTGILLITHDLGVVARIAD--EVAVMDDGRIVERG 208 (230)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 55544 456666655447899999999999888888 88888888877654
No 124
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.66 E-value=7.7e-16 Score=170.67 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=110.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-----HHhhcC-----------------------ccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----ILAQVG-----------------------ADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-----ilaq~G-----------------------~~vPa~~ 1064 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+. .. ..| .|+|+..
T Consensus 13 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDI-PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 36789999999 789999999999999999999999976 21 111 2444432
Q ss_pred c--ccchHHH----------------------HHHhcCchhhHhhc--ccchHH-HHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1065 F--EISPVDR----------------------IFVRMGAKDHIMAG--QSTFLT-ELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1065 ~--~l~~~d~----------------------i~~~ig~~d~i~~~--~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
. .+++.+. ++..+|..+.+... ...+++ +.++++.+.+++.+|+++|||||++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 170 (227)
T cd03260 91 NPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTS 170 (227)
T ss_pred hhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1 1122222 22333443333333 256764 5556777778899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ +.++..+.++ .++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 171 ~LD~~~~~~l-~~~l~~~~~~--~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~g 222 (227)
T cd03260 171 ALDPISTAKI-EELIAELKKE--YTIVIVTHNMQQAARVAD--RTAFLLNGRLVEFG 222 (227)
T ss_pred cCCHHHHHHH-HHHHHHHhhC--cEEEEEeccHHHHHHhCC--EEEEEeCCEEEEec
Confidence 8888755544 4666666543 799999999999988888 88899888877655
No 125
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3e-16 Score=166.71 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=101.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc----ccc------ccccchH---HHHHHhcCch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV----PAE------IFEISPV---DRIFVRMGAK 1080 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v----Pa~------~~~l~~~---d~i~~~ig~~ 1080 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.- ...|... +.. ...++++ ..+|..+...
T Consensus 14 ~~l~~~~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 14 TALDDISLTV-EKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 5788999998 7899999999999999999999998642 2223111 000 0011111 1123333444
Q ss_pred hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCC
Q 000778 1081 DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKD 1159 (1288)
Q Consensus 1081 d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~ 1159 (1288)
+++. ++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .+++.+.++ |.++|++||+.+++..+++
T Consensus 92 ~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~-g~tiii~th~~~~~~~~~d- 163 (173)
T cd03230 92 ENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKE-GKTILLSSHILEEAERLCD- 163 (173)
T ss_pred HHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHC-CCEEEEECCCHHHHHHhCC-
Confidence 5543 44 5667788888899999999999998888887655544 666677665 7899999999999888887
Q ss_pred CceEEeeeE
Q 000778 1160 PRVSLCHMA 1168 (1288)
Q Consensus 1160 ~~v~~~~~~ 1168 (1288)
++..++.|
T Consensus 164 -~i~~l~~g 171 (173)
T cd03230 164 -RVAILNNG 171 (173)
T ss_pred -EEEEEeCC
Confidence 77776654
No 126
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.2e-16 Score=173.54 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=107.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 22 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSI-GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 36899999999 78999999999999999999999986410 011234454421
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+++.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 1122222 2233344333333344555 45566778888899999999999999998875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
... ...++..+.++.|.++|++||+++.+..+ + ++.+++.|.++..
T Consensus 181 ~~~-l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~--~~~~l~~G~i~~~ 226 (233)
T PRK11629 181 ADS-IFQLLGELNRLQGTAFLVVTHDLQLAKRM-S--RQLEMRDGRLTAE 226 (233)
T ss_pred HHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHhh-C--EEEEEECCEEEEE
Confidence 554 44667777554478999999999998764 4 6677777766543
No 127
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.66 E-value=5.7e-16 Score=170.08 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=109.6
Q ss_pred ccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH--
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR-- 1072 (1288)
Q Consensus 1016 ~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~-- 1072 (1288)
..+++|.+ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+++.+.
T Consensus 14 ~~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 14 PMEFDLNV-ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred ceeeEEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 45788988 78999999999999999999999986411 111234554421 1222232
Q ss_pred -------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1073 -------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1073 -------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l 171 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM-LALV 171 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHH
Confidence 2333344333333345565 556677788888999999999999888888765544 4566
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+.++.++++|++||+.+++..+++ ++.+++.|.++..|
T Consensus 172 ~~~~~~~~~tii~vsh~~~~~~~~~d--~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 172 KQLCSERQRTLLMVTHHLSDARAIAS--QIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhcC--eEEEEECCeEEEec
Confidence 66655457899999999999888888 88888888877654
No 128
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.66 E-value=5.6e-16 Score=171.32 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=112.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC-----------------cccccccc---ccchHHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG-----------------ADVPAEIF---EISPVDR 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G-----------------~~vPa~~~---~l~~~d~ 1072 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+.. .+.| .|+|+... .+++.+.
T Consensus 13 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 13 QTAVNNISLTV-PKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred EEEEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 35788999998 7899999999999999999999998642 1112 23443321 1222222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~ 169 (223)
T TIGR03740 91 LKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIRS 169 (223)
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHHH
Confidence 2334444444444445566 566677888888999999999999888888865554 466666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.+. +.++|++||+.+++..+++ ++..++.|.++..+
T Consensus 170 ~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 170 FPEQ-GITVILSSHILSEVQQLAD--HIGIISEGVLGYQG 206 (223)
T ss_pred HHHC-CCEEEEEcCCHHHHHHhcC--EEEEEeCCEEEEec
Confidence 6554 7899999999999988888 88888888877654
No 129
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.3e-16 Score=172.95 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+... .++
T Consensus 16 ~~~l~~~sl~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 16 RRVVEDVSLTV-NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 46889999999 78999999999999999999999996411 011234444321 122
Q ss_pred hHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1069 PVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1069 ~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
+.+.+ +..+|..+........++ ++.++++.+.+++.+|+++|||||++|.|+....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 22322 223333333333344555 4556678888889999999999998888887555
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+ +.++..+.+ .|.++|++||+++.+..+++ ++..++.|.++..+
T Consensus 175 ~l-~~~l~~~~~-~g~tiii~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 219 (241)
T PRK10895 175 DI-KRIIEHLRD-SGLGVLITDHNVRETLAVCE--RAYIVSQGHLIAHG 219 (241)
T ss_pred HH-HHHHHHHHh-cCCEEEEEEcCHHHHHHhcC--EEEEEeCCeEEeeC
Confidence 44 466777755 38899999999998888888 88888888776554
No 130
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.2e-16 Score=177.43 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=113.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc----
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---- 1065 (1288)
.+++|++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|||+...
T Consensus 21 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDVNTEF-EQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred CceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 5899999999 78999999999999999999999985311 111135555320
Q ss_pred ccchHH---------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVD---------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d---------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
...+.+ .++..+|.. +.......+++ +++++++.+.+++.+|++||||||++|.|+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 011222 223334443 23334455666 5566777888889999999999998888888
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ ..++..+.++.|+|+|++||+++++..+++ +|.+++.|.++..|
T Consensus 180 ~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d--ri~~l~~G~i~~~g 228 (286)
T PRK13646 180 SKRQV-MRLLKSLQTDENKTIILVSHDMNEVARYAD--EVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 65544 467777765558999999999999988888 89999999887665
No 131
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.66 E-value=5.9e-16 Score=175.73 Aligned_cols=159 Identities=18% Similarity=0.114 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------------HhhcCccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEI----- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------------laq~G~~vPa~~----- 1064 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+.. ..+.-.|+|+..
T Consensus 24 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNVSLSI-EEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCceeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 47899999999 7899999999999999999999998631 011223555542
Q ss_pred cccchHHH----------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1065 FEISPVDR----------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1065 ~~l~~~d~----------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
....+.+. ++..+|.. .........++ ++.++++.+.+++.+|++||||||++|.|
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11222222 22233332 22223334455 55667788888899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..... ...++..+.+..+.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 183 ~~~~~~-l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 183 MVLQAV-ILELLRKLQQAFGTAYLFITHDLRLVQSFCQ--RVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHH-HHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc--EEEEEeCCEEEEECC
Confidence 875444 3466666655457899999999999988888 888888888776653
No 132
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=6.1e-16 Score=173.19 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=110.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccchH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
.++++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++.
T Consensus 15 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 15 KAVNNLNLEI-AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred eEeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 5788999999 78999999999999999999999985311 011134454321 12222
Q ss_pred HH---------------------HHHhcCchh--hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1071 DR---------------------IFVRMGAKD--HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1071 d~---------------------i~~~ig~~d--~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+. ++..+|... ........++ ++.++++.+.+++.+|+|+|||||++|.|+.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 22 233344432 2333445566 45566788888899999999999988888875444
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++.++++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 174 -l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 218 (242)
T cd03295 174 -LQEEFKRLQQELGKTIVFVTHDIDEAFRLAD--RIAIMKNGEIVQVG 218 (242)
T ss_pred -HHHHHHHHHHHcCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEec
Confidence 4466666655447899999999999888888 88888888876544
No 133
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6e-16 Score=176.92 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=113.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
.+++|++|++ .+|++++|+||||||||||||+|+|+... .+...|+++.. ....+
T Consensus 21 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 21 YTLNDVSFHV-KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 5889999999 78999999999999999999999986411 11123454432 11122
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++..+|..+.......+++ +++++++.+.+++.+|+|||||||++|.|+.....
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~- 178 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE- 178 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH-
Confidence 222 2334444444444556676 56677888888999999999999999998875554
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++.|+|+|++||+++.+. .++ ++.+++.|.++..|
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~~-~~d--ri~~l~~G~i~~~g 222 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEVA-LSD--RVLVMKNGQVESTS 222 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHH-hCC--EEEEEECCEEEEEC
Confidence 446777776555899999999999884 577 89999999887655
No 134
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.4e-16 Score=176.01 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc----c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF----E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~----~ 1066 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+... .
T Consensus 14 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 14 EPVLKGLNLDF-SLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred cccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 46889999999 78999999999999999999999985410 111235554421 0
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+. ++..+|..+......+.++ ++.++++.+.+++.+|++||||||++|.|+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 111111 1222233332333345566 455667788888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ ..++..+.++ +.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 173 ~~l-~~~l~~~~~~-g~tii~vtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 219 (271)
T PRK13638 173 TQM-IAIIRRIVAQ-GNHVIISSHDIDLIYEISD--AVYVLRQGQILTHGA 219 (271)
T ss_pred HHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 544 4666667554 7899999999999988888 888888888876653
No 135
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.65 E-value=8.2e-16 Score=170.38 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=107.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc-----
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF----- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~----- 1065 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+|+... ...-.|+|+...
T Consensus 19 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSI-KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 5789999999 78999999999999999999999985410 011224444320
Q ss_pred ccchHHHH-----------------------HHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 EISPVDRI-----------------------FVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 ~l~~~d~i-----------------------~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+++.+.+ +..++.. ..+......++ ++.++++.+.+++.+|+++|||||++|.|
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 12222222 1222321 12223334455 56667788888899999999999999988
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+.....+ ..++..+.++.+.++|++||+.+.+..+++ ++.+++.|.++.
T Consensus 178 ~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~ 226 (228)
T cd03257 178 VSVQAQI-LDLLKKLQEELGLTLLFITHDLGVVAKIAD--RVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcC--eEEEEeCCEEEe
Confidence 8755544 456666655447899999999999988888 888888887654
No 136
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.65 E-value=7.3e-16 Score=172.51 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=109.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHh---------------------hcC-ccccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILA---------------------QVG-ADVPAEIFE--- 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ila---------------------q~G-~~vPa~~~~--- 1066 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+. +.. ..+ .|+|+....
T Consensus 13 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 13 KEILKGVNLTV-KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred EEEEeccceEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 35788999999 789999999999999999999999972 111 111 244443211
Q ss_pred cchH----------------------------HHHHHhcCchhh-Hhhccc-chH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1067 ISPV----------------------------DRIFVRMGAKDH-IMAGQS-TFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1067 l~~~----------------------------d~i~~~ig~~d~-i~~~~S-tf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
+.+. ..++.++|..+. ...... .++ ++.++++.+.+++.+|+++|||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1111 112223333321 222233 366 556677888888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh-cCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY-KKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~-~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++|.|+.....+. .++..+.+ .+.++|++||+.+++..+ ++ ++.+++.|.++..+.
T Consensus 172 t~~LD~~~~~~l~-~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d--~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 172 DSGLDIDALKIVA-EGINRLRE-PDRSFLIITHYQRLLNYIKPD--YVHVLLDGRIVKSGD 228 (243)
T ss_pred cccCCHHHHHHHH-HHHHHHHH-CCcEEEEEEecHHHHHhhcCC--eEEEEeCCEEEEecC
Confidence 8888887655444 66666654 378999999999999887 67 888898888876653
No 137
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.3e-16 Score=177.70 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=114.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI---- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~---- 1064 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+...|||+..
T Consensus 20 ~~~L~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSI-PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 35889999999 78999999999999999999999986421 01123455432
Q ss_pred cccchHHH---------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1065 FEISPVDR---------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1065 ~~l~~~d~---------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
....+.+. ++..+|.. +.......+++ ++.++++.+.+++.+|++||||||++|.|+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 01122222 23344443 22334455666 455667778888999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+ ..++..+.++.|.|+|++||+++.+..+++ +|.+++.|.++..|
T Consensus 179 ~~~~~l-~~~L~~l~~~~g~tviiitHd~~~~~~~~d--rv~~l~~G~i~~~g 228 (290)
T PRK13634 179 KGRKEM-MEMFYKLHKEKGLTTVLVTHSMEDAARYAD--QIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 765543 466777766558899999999999998888 99999999888765
No 138
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=5.7e-16 Score=184.12 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=115.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||||||||||+|+++... .+.-.|+|+...
T Consensus 41 ~~~L~~isl~i-~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 41 SLGVKDASLAI-EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred eEEEEeEEEEE-cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 35789999999 78999999999999999999999985411 011235554431
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+++.+. ++..+|..+.+....+.+|+ +.++++.+.+++.+|++||||||++|.|+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 1222222 23344444444445566664 5566778888999999999999999999886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+ +.++..+.++.++|+||+||+++.+..+++ +|.+++.|.++..|+
T Consensus 200 r~~l-~~~L~~l~~~~g~TIIivTHd~~~~~~~~D--ri~vL~~G~i~~~g~ 248 (400)
T PRK10070 200 RTEM-QDELVKLQAKHQRTIVFISHDLDEAMRIGD--RIAIMQNGEVVQVGT 248 (400)
T ss_pred HHHH-HHHHHHHHHHCCCeEEEEECCHHHHHHhCC--EEEEEECCEEEecCC
Confidence 5544 456666655458899999999999988888 899999999887654
No 139
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.65 E-value=3.3e-14 Score=180.30 Aligned_cols=150 Identities=17% Similarity=0.118 Sum_probs=101.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------h---hcCccccccc----cccchHHHH-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------A---QVGADVPAEI----FEISPVDRI----- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------a---q~G~~vPa~~----~~l~~~d~i----- 1073 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+... . .+ .|+++.. ..+++.+.+
T Consensus 332 ~~il~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 332 KQLVKDFSAQV-QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEV-AYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred eEEEcCcEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEE-EEEeCcccccCCCCCHHHHHHhhcc
Confidence 46899999999 78999999999999999999999986421 1 11 2444431 112233322
Q ss_pred --------------HHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1074 --------------FVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1074 --------------~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
+.+++.. +......+++|+ |.++++.+..++.+|.|||||||++|.|+.... .+.+ +.+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~----~l~~-~l~ 484 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE----LLEE-LLD 484 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH----HHHH-HHH
Confidence 2233332 233444566774 555677778889999999999996666665332 2333 334
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEee-eEEEE
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCH-MACQV 1171 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~-~~~~~ 1171 (1288)
..++++|+||||.+++..+++ ++..++ .|.+.
T Consensus 485 ~~~~tvi~vSHd~~~~~~~~d--~i~~l~~~g~i~ 517 (635)
T PRK11147 485 SYQGTVLLVSHDRQFVDNTVT--ECWIFEGNGKIG 517 (635)
T ss_pred hCCCeEEEEECCHHHHHHhcC--EEEEEeCCCeEE
Confidence 446799999999999998888 777776 56543
No 140
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6e-16 Score=177.01 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=113.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF----EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~----~l 1067 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+... ..
T Consensus 23 ~~vl~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEV-KKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 46899999999 78999999999999999999999985410 111234554321 00
Q ss_pred chH---------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPV---------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~---------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.+. ..++.++|..+.+.....++| ++.++++.+.+++.+|+|||||||++|.|+....
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 111 122334455444445556666 4556677778889999999999999999988766
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+. .++..+.++.|+++|++||+++.+.. ++ ++.+++.|.++..|
T Consensus 182 ~l~-~~l~~l~~~~g~tillvtH~~~~~~~-~d--~v~~l~~G~i~~~g 226 (280)
T PRK13633 182 EVV-NTIKELNKKYGITIILITHYMEEAVE-AD--RIIVMDSGKVVMEG 226 (280)
T ss_pred HHH-HHHHHHHHhcCCEEEEEecChHHHhc-CC--EEEEEECCEEEEec
Confidence 554 67777765458999999999999865 66 89999988877655
No 141
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7.1e-16 Score=176.68 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=114.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccc----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEI----FE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~----~~ 1066 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.- +.....|+|+.. ..
T Consensus 19 ~~~l~~vs~~i-~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 19 THALKGININI-KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 46889999999 7899999999999999999999998631 011123555542 11
Q ss_pred cchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+.+ +.++|..+........++ ++.++++.+.+++.+|+|||||||++|.|+...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1222222 233333333333445556 455667778888999999999999888888755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ ..++..+.++.|.|+|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 178 ~~l-~~~l~~l~~~~g~tillvsH~~~~~~~~~d--ri~~l~~G~i~~~g~ 225 (283)
T PRK13636 178 SEI-MKLLVEMQKELGLTIIIATHDIDIVPLYCD--NVFVMKEGRVILQGN 225 (283)
T ss_pred HHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 544 466677765558899999999999988888 899999998877653
No 142
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.65 E-value=8.2e-16 Score=173.84 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=109.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ...+
T Consensus 15 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 15 RTLLDDVSLTL-RPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 46889999999 78999999999999999999999986411 011234454321 1223
Q ss_pred HHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhC------CCCcEEEEeCCCCCCCh
Q 000778 1070 VDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSA------TRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1070 ~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a------~~~sLvLLDEpg~GTs~ 1121 (1288)
.+.+ +..+|..+........++ ++.++++.+.+++ .+|+++|||||++|.|+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 3322 223333333333344555 4556677777777 48999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+. .++..+.++.+.++|++||+++++..+++ +|.+++.|.++..+
T Consensus 174 ~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 223 (258)
T PRK13548 174 AHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYAD--RIVLLHQGRLVADG 223 (258)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcC--EEEEEECCEEEeeC
Confidence 8655544 56666653347899999999999988888 88888888766543
No 143
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.3e-16 Score=162.47 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=112.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------------HHhhcCcccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------------ILAQVGADVPAE 1063 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~----------------------------ilaq~G~~vPa~ 1063 (1288)
...++.||+|.+ .++.+.+|+||+|||||||||++..+. +-.++|+.....
T Consensus 19 ~~~aL~~i~l~i-~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 19 DKHALKDINLDI-PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred chhhhccCceec-cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 457899999999 789999999999999999999998643 223444332111
Q ss_pred -ccccchHHHHHH--h-cC----------------------chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1064 -IFEISPVDRIFV--R-MG----------------------AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1064 -~~~l~~~d~i~~--~-ig----------------------~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
....+++|.+-- | .| +.|.+....-.++ ++.+++..+.++|.+|++||||||+
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 122445554321 0 01 1233333333455 4556778888899999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..||.....| ..++..|.+ .-|+++|||.+..+.+..+ ...++++|.+++.|.
T Consensus 178 SALDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD--~taFf~~G~LvE~g~ 231 (253)
T COG1117 178 SALDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSD--YTAFFYLGELVEFGP 231 (253)
T ss_pred cccCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhH--hhhhhcccEEEEEcC
Confidence 77777755554 366666753 5799999999999999999 788999999998764
No 144
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.65 E-value=8.1e-16 Score=172.17 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hh-cCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQ-VGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq-~G~~vPa~~~---~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... .+ .-.|+|+... .++
T Consensus 15 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 15 FKALNDLSLYV-DPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred eEEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 46889999999 78999999999999999999999985311 01 1123333221 112
Q ss_pred hHHH-----------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1069 PVDR-----------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1069 ~~d~-----------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
+.+. ++.++|..+.+....++++ ++.++++.+.+++.+|+++|||||++|
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 2222 2233333333333344555 566678888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.|+.....+ +.++..+.+ +.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 174 LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d--~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 174 MTDEETEKT-AELLKSLAG--KHSVVVVEHDMEFVRSIAD--KVTVLHQGSVLAEG 224 (242)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHHHhCC--EEEEEECCeEEeeC
Confidence 888865544 456666643 5799999999999988888 88888888776554
No 145
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.65 E-value=5.8e-16 Score=174.27 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=110.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---------hcCcccccccc---cc--ch---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------QVGADVPAEIF---EI--SP--------- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------q~G~~vPa~~~---~l--~~--------- 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.|+|+... .+ .+
T Consensus 17 ~~vl~~vs~~i-~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 17 RRVLSDVSLEL-KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred ceEEEeEEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 36889999999 789999999999999999999999864211 01134454321 10 11
Q ss_pred -----HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1070 -----VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1070 -----~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
+..++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.+|..+.++.++++
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~g~ti 174 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL-YDLIDQLRRELDCAV 174 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHHhcCCEE
Confidence 1123345555555555566677 556667888888999999999999888888765544 456666655447899
Q ss_pred EEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1144 l~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
|++||+++++..+++ +|.+++. .++..
T Consensus 175 iivsH~~~~i~~~~d--~i~~l~~-~i~~~ 201 (251)
T PRK09544 175 LMVSHDLHLVMAKTD--EVLCLNH-HICCS 201 (251)
T ss_pred EEEecCHHHHHHhCC--EEEEECC-ceEee
Confidence 999999999988888 7777653 44443
No 146
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.9e-16 Score=176.38 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=113.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.-. .+.-.|+|+.. ....
T Consensus 20 ~~~l~~vsl~i-~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSV-YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 45889999999 78999999999999999999999986411 11123444432 1112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..+|..+.+......+++ +.++++.+.+++.+|+|||||||++|.|+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2222 33344554444555566664 5556777788899999999999999999886655
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+ +.++..+.++.++|+|++||+++.+.. ++ ++.+++.|.++..+
T Consensus 179 l-~~~l~~l~~~~~~tilivsH~~~~~~~-~d--~i~~l~~G~i~~~g 222 (279)
T PRK13635 179 V-LETVRQLKEQKGITVLSITHDLDEAAQ-AD--RVIVMNKGEILEEG 222 (279)
T ss_pred H-HHHHHHHHHcCCCEEEEEecCHHHHHc-CC--EEEEEECCEEEEEC
Confidence 4 466777766558999999999998864 66 89999988877655
No 147
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.65 E-value=7.5e-16 Score=170.51 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=108.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------hhcC-ccccccccccchHHH----
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------AQVG-ADVPAEIFEISPVDR---- 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------aq~G-~~vPa~~~~l~~~d~---- 1072 (1288)
+..++++++|++ .+|++++|+||||+|||||+++|+|+.-. .+.+ .+.|. +++.+.
T Consensus 34 ~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~----~tv~enl~~~ 108 (224)
T cd03220 34 EFWALKDVSFEV-PRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE----LTGRENIYLN 108 (224)
T ss_pred CeEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC----CcHHHHHHHH
Confidence 356899999999 78999999999999999999999986421 0111 11111 122221
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..++..+.+......++ ++.++++.++.++.+|+++|||||++|.|+.....+. .++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~-~~l~~ 187 (224)
T cd03220 109 GRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ-RRLRE 187 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 2233344443444445566 5666778888889999999999999999887655544 56666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+.++ +.++|++||+.+.+..+++ ++.+++.|.++.
T Consensus 188 ~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~ 222 (224)
T cd03220 188 LLKQ-GKTVILVSHDPSSIKRLCD--RALVLEKGKIRF 222 (224)
T ss_pred HHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEe
Confidence 6555 7899999999999988887 888888877654
No 148
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.65 E-value=6e-16 Score=175.84 Aligned_cols=158 Identities=14% Similarity=0.060 Sum_probs=110.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc-----cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF-----EI 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~-----~l 1067 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+... .+
T Consensus 26 ~~~l~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTL-REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEe-cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 36899999999 78999999999999999999999986411 111234444321 00
Q ss_pred chH----------------------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1068 SPV----------------------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1068 ~~~----------------------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+. ..++..+|.. +......+.++ ++.++++.+.+++.+|.+||||||++|.|+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 111 1123334442 22222334555 55667788888899999999999988888865
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
... ...+|..+.++.+.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 185 ~~~-l~~~l~~~~~~~g~tviivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 232 (267)
T PRK15112 185 RSQ-LINLMLELQEKQGISYIYVTQHLGMMKHISD--QVLVMHQGEVVERG 232 (267)
T ss_pred HHH-HHHHHHHHHHHcCcEEEEEeCCHHHHHHhcC--EEEEEECCEEEecC
Confidence 444 3456666655457899999999999988888 88888888776544
No 149
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.65 E-value=6.8e-16 Score=180.09 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=114.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEI----- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~----- 1064 (1288)
..+.+|++|++ .+|++++|+|+||||||||+|+|+|+.-. ...-.+|++..
T Consensus 34 ~~~l~~vsl~i-~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRL-YEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 45889999999 78999999999999999999999985411 01123455442
Q ss_pred cccchHHHH-----------------------HHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1065 FEISPVDRI-----------------------FVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1065 ~~l~~~d~i-----------------------~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
..+.+.+.+ +.++|.. +.+......+|+ +.++++.+++++.+|+|||+|||++|.
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 112233332 2233331 122333455665 445677778889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|..-...+ ..+|..+.++.+.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 193 D~~~~~~i-~~lL~~l~~~~~~til~iTHdl~~~~~~~d--ri~vl~~G~ive~g~ 245 (331)
T PRK15079 193 DVSIQAQV-VNLLQQLQREMGLSLIFIAHDLAVVKHISD--RVLVMYLGHAVELGT 245 (331)
T ss_pred CHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 87755544 466777766568999999999999999998 999999999988764
No 150
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.6e-16 Score=173.71 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------hhcCcccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------AQVGADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------aq~G~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 25 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 25 KQALKNVSMQI-PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 46899999999 78999999999999999999999986421 011124443321
Q ss_pred c--cchHHHH---------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1066 E--ISPVDRI---------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1066 ~--l~~~d~i---------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
. .++.+.+ +..++.. +.+......++ ++.++++.+.+++.+|+++|||||++
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 1 1222222 1111211 11122233455 56667888888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ +.+++.+. + ++++|++||+++++..+++ ++.+++.|.++..+
T Consensus 184 ~LD~~~~~~l-~~~l~~l~-~-~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 235 (258)
T PRK14268 184 ALDPISTARI-EDLIMNLK-K-DYTIVIVTHNMQQAARISD--YTGFFLMGELIEFG 235 (258)
T ss_pred ccCHHHHHHH-HHHHHHHh-h-CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 8888866554 46666664 3 6899999999999988888 89999998887655
No 151
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.65 E-value=5.5e-16 Score=167.76 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=106.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--HHhhcCccc----cc----cccccchH---HHHHHhcCc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--ILAQVGADV----PA----EIFEISPV---DRIFVRMGA 1079 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--ilaq~G~~v----Pa----~~~~l~~~---d~i~~~ig~ 1079 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+. - ...|... +. ....++++ ..+|..+..
T Consensus 22 ~~~l~~~~~~i-~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 22 KQLLKNVSGKA-KPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ccceecceEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH
Confidence 46899999999 789999999999999999999999875 2 2223110 00 00011111 112233344
Q ss_pred hhhHhhccc--chH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhh
Q 000778 1080 KDHIMAGQS--TFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVD 1155 (1288)
Q Consensus 1080 ~d~i~~~~S--tf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~ 1155 (1288)
.+++..... .++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+.++ +.++|++||+++ ....
T Consensus 100 ~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sh~~~~~~~~ 177 (194)
T cd03213 100 RETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLADT-GRTIICSIHQPSSEIFE 177 (194)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCchHHHHH
Confidence 444432211 455 566677888888999999999999999988765544 4667777554 889999999996 6777
Q ss_pred hcCCCceEEeeeEEEEe
Q 000778 1156 YKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~~~~~ 1172 (1288)
+++ ++.+++.|.++.
T Consensus 178 ~~d--~v~~l~~G~i~~ 192 (194)
T cd03213 178 LFD--KLLLLSQGRVIY 192 (194)
T ss_pred hcC--EEEEEeCCEEEe
Confidence 777 888888776653
No 152
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-15 Score=172.52 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++
T Consensus 15 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 15 KRILNDLSLSL-PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEEEeeeeeEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 46889999998 78999999999999999999999985310 111234554421 1222
Q ss_pred HHHH-------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDRI-------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~i-------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+ +..+|..+.+......+| ++.++++.+.+++.+|+|+|||||++|.|+..
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2222 222333333333344555 56667888888999999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+ ..++..+.++ ++++|++||+++.+..+++ ++.+++.|.++..
T Consensus 174 ~~~l-~~~l~~l~~~-~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~ 219 (255)
T PRK11231 174 QVEL-MRLMRELNTQ-GKTVVTVLHDLNQASRYCD--HLVVLANGHVMAQ 219 (255)
T ss_pred HHHH-HHHHHHHHHC-CCEEEEEECCHHHHHHhcC--EEEEEECCeEEEE
Confidence 5544 3566666554 7899999999999998888 8888888776544
No 153
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.64 E-value=1e-15 Score=170.85 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchH-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPV- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~- 1070 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.-. .+...|+|+... ..++.
T Consensus 13 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 13 FQALDDVNLEV-PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 35889999999 78999999999999999999999985311 011234444321 11111
Q ss_pred --------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1071 --------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1071 --------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
+.++.+++..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~ 170 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL-R 170 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 223334444443444445566 455667888888999999999999888888755444 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++..+.++.++++|++||+++.+..+++ ++..+..|.++..+
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d--~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVAD--RIVVMSNGKIEQIG 213 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcC--EEEEEECCEEEEec
Confidence 56666655447899999999999888888 88888888887654
No 154
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=7.6e-16 Score=179.52 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=114.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------h----hcCcccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------A----QVGADVPAEIF 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------a----q~G~~vPa~~~ 1065 (1288)
.+++||+|++ .+|++++|+|+||||||||+++|+|+.-. . +.-.+||+...
T Consensus 21 ~~l~~vsl~i-~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 21 RAVDRISYSV-KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5899999999 88999999999999999999999986421 0 01234554421
Q ss_pred -----ccchH----------------------HHHHHhcCchh---hHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeC
Q 000778 1066 -----EISPV----------------------DRIFVRMGAKD---HIMAGQSTFLTEL-SETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1066 -----~l~~~----------------------d~i~~~ig~~d---~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDE 1114 (1288)
.+.+. ..++.++|..+ .+......+|++| ++++.+++++.+|+|||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 11111 12233444432 2333455677555 56777788899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|++|.|+.-... ...+|..+.++.|.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 180 Pts~LD~~~~~~-il~lL~~l~~~~g~til~iTHdl~~~~~~ad--ri~vm~~G~ive~g~ 237 (326)
T PRK11022 180 PTTALDVTIQAQ-IIELLLELQQKENMALVLITHDLALVAEAAH--KIIVMYAGQVVETGK 237 (326)
T ss_pred CCCCCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 988888775544 3466777766568999999999999998898 999999999998764
No 155
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1e-15 Score=174.64 Aligned_cols=156 Identities=15% Similarity=0.055 Sum_probs=110.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc----ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF----EIS 1068 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~----~l~ 1068 (1288)
.+++|++|++ .+|++++|+||||+|||||||+|+|+.-. ...-.|+|+... ..+
T Consensus 16 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 16 PALENINLVI-KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred ceeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 5789999999 78999999999999999999999985310 111234444321 112
Q ss_pred hHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+. ++..+|..+.+......++ ++.++++.+.+++.+|+|||||||++|.|+.....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2222 2223344433344455566 45556777778899999999999999988875444
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++ |.|+|++||+++.+. .++ +|.+++.|.++..|.
T Consensus 175 -l~~~l~~l~~~-g~til~~tH~~~~~~-~~d--~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 175 -VLERIKKLHEK-GKTIVYITHNLEELH-DAD--RIIVMDRGKIVLEGE 218 (274)
T ss_pred -HHHHHHHHHhC-CCEEEEEecCHHHHh-hCC--EEEEEECCEEEEECC
Confidence 45667777654 899999999999885 477 899999898876653
No 156
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1e-15 Score=178.98 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=113.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------h----hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------A----QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------a----q~G~~vPa~~ 1064 (1288)
..+++|++|++ .+|++++|+|+||||||||+|+|+|+.-. . ..-.+||+..
T Consensus 20 ~~~l~~vsl~i-~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTL-TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 45899999999 78999999999999999999999987410 0 0113455442
Q ss_pred c-----ccchHHH---------------------------HHHhcCchh---hHhhcccchHHH-HHHHHHHHHhCCCCc
Q 000778 1065 F-----EISPVDR---------------------------IFVRMGAKD---HIMAGQSTFLTE-LSETALMLSSATRNS 1108 (1288)
Q Consensus 1065 ~-----~l~~~d~---------------------------i~~~ig~~d---~i~~~~Stf~~e-~~~~~~il~~a~~~s 1108 (1288)
. .+.+.+. ++.++|..+ .+......+|++ .++++.+.+++.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 1 1111111 223333332 122333456654 456777888899999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|||+|||++|.|+.-...+ ..+|..+.++.|.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 179 llilDEPts~LD~~~~~~i-~~lL~~l~~~~g~tii~itHdl~~v~~~~d--ri~vm~~G~ive~g~ 242 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQI-FRLLTRLNQNNNTTILLISHDLQMLSQWAD--KINVLYCGQTVETAP 242 (330)
T ss_pred EEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 9999999888887654443 466777766568999999999999999998 999999999988764
No 157
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.64 E-value=1.1e-15 Score=172.35 Aligned_cols=157 Identities=18% Similarity=0.097 Sum_probs=110.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------h------------hcCccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------A------------QVGADVPAEI 1064 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------a------------q~G~~vPa~~ 1064 (1288)
.+++|++|++ .+|++++|+||||+|||||||+|+|+.-. . +.-.|+|+..
T Consensus 17 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 17 KGCRDVSFDL-YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred eEeecceEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 5789999999 78999999999999999999999986310 0 0113444332
Q ss_pred c-----ccchHHH----------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1065 F-----EISPVDR----------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1065 ~-----~l~~~d~----------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
. .+...+. ++..++.. ..+......++ ++.++++.+.+++.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 0111111 22333433 23333445555 556678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+. .++..+.++.+.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 176 ~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d--~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 176 TGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQ--RLLVMQQGRVVESG 231 (253)
T ss_pred CccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEEC
Confidence 8888888665544 55555555457899999999999988887 88888888877654
No 158
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.64 E-value=1e-15 Score=172.63 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=110.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------h----------------hcCcccccccc-cc---
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------A----------------QVGADVPAEIF-EI--- 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------a----------------q~G~~vPa~~~-~l--- 1067 (1288)
.++++++|.+ .+|++++|+||||+|||||||+|+|+.-. + +...|+|+... .+
T Consensus 17 ~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 17 PLVHGVSLTL-QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred ceecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 5788999999 78999999999999999999999987422 0 11124444421 01
Q ss_pred -chHH-------------------HHHHhcCchh---hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1068 -SPVD-------------------RIFVRMGAKD---HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1068 -~~~d-------------------~i~~~ig~~d---~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+ .++..++..+ .+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 1111 1222333322 1233345566 56667888888999999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
... ...+|+.+.++.|.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 ~~~-l~~~L~~~~~~~g~til~~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 223 (254)
T PRK10418 176 QAR-ILDLLESIVQKRALGMLLVTHDMGVVARLAD--DVAVMSHGRIVEQG 223 (254)
T ss_pred HHH-HHHHHHHHHHhcCcEEEEEecCHHHHHHhCC--EEEEEECCEEEEec
Confidence 544 4466666765558899999999999988888 88888888876654
No 159
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.64 E-value=7.5e-16 Score=167.52 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=108.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHhhcCccc----c------ccc--cccchH---HHHHHh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVGADV----P------AEI--FEISPV---DRIFVR 1076 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ilaq~G~~v----P------a~~--~~l~~~---d~i~~~ 1076 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+. +....|... + ... ..++++ ..++..
T Consensus 13 ~~~l~~is~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 13 KEILKGVNLTI-KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred EEeeeccceEE-CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 35788999998 789999999999999999999999973 222333111 0 000 001111 112333
Q ss_pred cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1077 MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+...+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+.++ ++++|++||+++.+..
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~~-~~tiii~sh~~~~~~~ 169 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLREE-GKSVLIITHYQRLLDY 169 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHC-CCEEEEEecCHHHHHH
Confidence 334444433324566 556677888888999999999999888888755544 4666667554 7899999999998877
Q ss_pred -hcCCCceEEeeeEEEEecC
Q 000778 1156 -YKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1156 -~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++ ++..++.|.++..+
T Consensus 170 ~~~d--~i~~l~~G~i~~~~ 187 (200)
T cd03217 170 IKPD--RVHVLYDGRIVKSG 187 (200)
T ss_pred hhCC--EEEEEECCEEEEEc
Confidence 677 88888888877655
No 160
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.8e-16 Score=174.29 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=110.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc-c---cch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF-E---ISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~-~---l~~ 1069 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... . ..+
T Consensus 23 ~~l~~isl~i-~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 23 FTLKDVSFNI-PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence 5889999999 78999999999999999999999986411 111234444321 0 111
Q ss_pred HH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+ .++..++..+........++ ++.++++.+.+++.+|+|+|||||++|.|+.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 12233344333334445566 556677888889999999999999999988866655
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
. .++..+.++.++++|++||+.+.+.. ++ +|.+++.|.++..+
T Consensus 182 ~-~~L~~~~~~~~~tiiivtH~~~~~~~-~d--~i~~l~~G~i~~~g 224 (269)
T PRK13648 182 L-DLVRKVKSEHNITIISITHDLSEAME-AD--HVIVMNKGTVYKEG 224 (269)
T ss_pred H-HHHHHHHHhcCCEEEEEecCchHHhc-CC--EEEEEECCEEEEec
Confidence 4 56666655457899999999998875 66 88888888877655
No 161
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.4e-15 Score=159.66 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=107.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCcccccccc-ccc--
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF-EIS-- 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~~-~l~-- 1068 (1288)
++-+.++++|+. .+|++++|+||||+|||||||.++|-. -||+.-...|+.+. .++
T Consensus 13 Gr~ll~~vsl~~-~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 13 GRRLLDGVSLDL-RPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred cceeccCcceec-cCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 567899999998 899999999999999999999999821 23443334444321 111
Q ss_pred -----------------------hHHHHHHhcCchhhHhhcccchH-HHHHHH--HHHHHhCCC----CcEEEEeCCCCC
Q 000778 1069 -----------------------PVDRIFVRMGAKDHIMAGQSTFL-TELSET--ALMLSSATR----NSLVVLDELGRG 1118 (1288)
Q Consensus 1069 -----------------------~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~--~~il~~a~~----~sLvLLDEpg~G 1118 (1288)
+..+.+.+.+....-....-+++ +|.+++ +..|+.... +..++||||++.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 12223333332222222222333 566654 555655443 359999999444
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.|..-... ...+...|+++ |+.|+.+-||++++..++| +|+++|.|+++..|.+
T Consensus 172 LDi~HQ~~-tl~laR~la~~-g~~V~~VLHDLNLAA~YaD--rivll~~Grv~a~g~p 225 (259)
T COG4559 172 LDIAHQHH-TLRLARQLARE-GGAVLAVLHDLNLAAQYAD--RIVLLHQGRVIASGSP 225 (259)
T ss_pred cchHHHHH-HHHHHHHHHhc-CCcEEEEEccchHHHHhhh--eeeeeeCCeEeecCCH
Confidence 44333333 34677788776 7999999999999999999 9999999999998854
No 162
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=7.6e-16 Score=163.53 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc-----cccccc-cccchH--HHHHHhcCchh-hH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-----DVPAEI-FEISPV--DRIFVRMGAKD-HI 1083 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~-----~vPa~~-~~l~~~--d~i~~~ig~~d-~i 1083 (1288)
..++++++|++ .+|++++|+||||+|||||||++.. ..|. ..+... ..+.++ ...+.+++... .+
T Consensus 8 ~~~l~~isl~i-~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~ 81 (176)
T cd03238 8 VHNLQNLDVSI-PLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTL 81 (176)
T ss_pred eeeecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCcccc
Confidence 57789999999 7899999999999999999998842 1121 111110 011122 23556677654 35
Q ss_pred hhcccchHH-HHHHHHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCC
Q 000778 1084 MAGQSTFLT-ELSETALMLSSATR--NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1084 ~~~~Stf~~-e~~~~~~il~~a~~--~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~ 1160 (1288)
.....+++. +.++++.+.+++.+ |+++|||||++|.|+.....+. .++..+.+ .+.++|++||+++++. .++
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~-~g~tvIivSH~~~~~~-~~d-- 156 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLID-LGNTVILIEHNLDVLS-SAD-- 156 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCCEEEEEeCCHHHHH-hCC--
Confidence 555667774 45567777778889 9999999999998888666554 45555654 4899999999999874 566
Q ss_pred ceEEeeeE
Q 000778 1161 RVSLCHMA 1168 (1288)
Q Consensus 1161 ~v~~~~~~ 1168 (1288)
++..+..|
T Consensus 157 ~i~~l~~g 164 (176)
T cd03238 157 WIIDFGPG 164 (176)
T ss_pred EEEEECCC
Confidence 66666544
No 163
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.64 E-value=8e-16 Score=181.65 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=114.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------h--------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------A--------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------a--------------------q~G~~vPa~~ 1064 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+++.-. . +.-.||++..
T Consensus 37 ~~~l~~vsf~i-~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDI-EEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 56789999999 78999999999999999999999985411 0 0123444432
Q ss_pred cc---cchHHHH---------------------HHhcCchhhHhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1065 FE---ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTE-LSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1065 ~~---l~~~d~i---------------------~~~ig~~d~i~~~~Stf~~e-~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.- .++.+.+ +..+|..+........++++ .++++.+.+++.+|+++|||||++|.
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 21 2222222 22333333333344556644 45677778889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+.....+. .++..+.++.+.|+||+||+++++..+++ +|.+++.|.++..|+
T Consensus 196 D~~~r~~l~-~~L~~l~~~~~~TII~iTHdl~e~~~l~D--rI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 196 DPLIRTQLQ-DELLELQAKLNKTIIFVSHDLDEALKIGN--RIAIMEGGRIIQHGT 248 (382)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 998766654 45555655558999999999999999898 999999999987764
No 164
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.9e-15 Score=169.17 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------------hhcCcccccccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------------AQVGADVPAEIF- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------------aq~G~~vPa~~~- 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+...
T Consensus 15 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 15 HQALFDITLDC-PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeeEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 35789999999 78999999999999999999999986310 011134554321
Q ss_pred --ccchHHHH----------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 --EISPVDRI----------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 --~l~~~d~i----------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+++.+.+ +..+|....+......++ ++.++++.+.+++.+|+|+|||||++|.|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 12223322 222333333333344455 56667888888899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+..... ...+++.+.++ +.++|++||+.+.+..+++ ++.++..|.++..+
T Consensus 174 ~~~~~~-l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d--~i~~l~~g~i~~~~ 223 (242)
T PRK11124 174 PEITAQ-IVSIIRELAET-GITQVIVTHEVEVARKTAS--RVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 875444 34667777543 7899999999999988887 88888888877654
No 165
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.1e-15 Score=175.36 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=112.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI----F 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~----~ 1065 (1288)
.+++|++|.+ .+|++++|+||||+|||||||+|+|+... .+...||++.. .
T Consensus 20 ~~l~~vsl~i-~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEV-KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 5889999999 78999999999999999999999986411 01112444431 1
Q ss_pred ccchHHHH---------------------HHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVDRI---------------------FVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d~i---------------------~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
..++.+.+ +..+|.. +........++ ++.++++.+..++.+|++||||||++|.|+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 11222222 2223332 12223334455 5666788888889999999999999998887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+ ..++..+.++ |.|+|++||+++++..+++ +|.+++.|.++..|.
T Consensus 179 ~~~~l-~~~l~~l~~~-g~til~vtHd~~~~~~~~d--ri~~l~~G~i~~~g~ 227 (288)
T PRK13643 179 ARIEM-MQLFESIHQS-GQTVVLVTHLMDDVADYAD--YVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 55544 4677777654 8899999999999988888 999999998887653
No 166
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=169.86 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=107.8
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH----
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR---- 1072 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~---- 1072 (1288)
+++|++ .+|++++|+||||+|||||||+|+|+... .....|+|+... .+++.+.
T Consensus 17 ~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTV-ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 788988 78999999999999999999999986411 011124444321 1222222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..+|....+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~-~~~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM-LTLVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 2233444433444445566 456677788888999999999999888888865544 356666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++.++++|++||+.+++..+++ ++..++.|.++..+
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~g~i~~~g 212 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAP--RSLVVADGRIAWDG 212 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 655447899999999999988888 88888888776544
No 167
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.4e-15 Score=167.13 Aligned_cols=151 Identities=17% Similarity=0.076 Sum_probs=106.6
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---ccchH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+++|++ .+ ++++|+||||+||||||++|+|+... .+.-.|+|+... .+++.
T Consensus 16 ~vsl~i-~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDL-NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEE-cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 899998 77 99999999999999999999986421 011124444321 11222
Q ss_pred HH-------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1071 DR-------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1071 d~-------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+. ++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 172 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL-LP 172 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HH
Confidence 22 2334444444444455666 455667788888999999999999888888765544 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..
T Consensus 173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~ 213 (214)
T cd03297 173 ELKQIKKNLNIPVIFVTHDLSEAEYLAD--RIVVMEDGRLQYI 213 (214)
T ss_pred HHHHHHHHcCcEEEEEecCHHHHHHhcC--EEEEEECCEEEec
Confidence 6666655447899999999999988888 8888888876543
No 168
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.63 E-value=1.6e-15 Score=171.29 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=112.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------------hhcCcc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------------AQVGAD 1059 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------------aq~G~~ 1059 (1288)
..++++++|++ .+|++++|+||||+||||||++|+|+... .+.-.|
T Consensus 18 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 18 HEVLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 46889999999 78999999999999999999999986411 011134
Q ss_pred cccccc---ccchHHHH----------------------HHhcCchhhH-hhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1060 VPAEIF---EISPVDRI----------------------FVRMGAKDHI-MAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1060 vPa~~~---~l~~~d~i----------------------~~~ig~~d~i-~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
+|+... .+.+.+.+ +.++|..+.+ ......++ ++.++++.+.+++.+|+++||
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 443321 12233332 2233333222 23344555 455667788888999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|||++|.|+.....+. .++..+.+. |+++|++||+.+++..+++ +|.+++.|.++..+
T Consensus 177 DEPt~~LD~~~~~~l~-~~l~~l~~~-g~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 234 (257)
T PRK10619 177 DEPTSALDPELVGEVL-RIMQQLAEE-GKTMVVVTHEMGFARHVSS--HVIFLHQGKIEEEG 234 (257)
T ss_pred eCCcccCCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 9999999888666544 566677554 8999999999999988888 89899988887655
No 169
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=4.6e-16 Score=166.07 Aligned_cols=146 Identities=22% Similarity=0.235 Sum_probs=99.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc------------cccchH---HHHHHhc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI------------FEISPV---DRIFVRM 1077 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~------------~~l~~~---d~i~~~i 1077 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.- ...|... .... ..++++ ..++..+
T Consensus 14 ~~l~~i~~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 14 TVLNDVSLNI-EAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred EEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 5788999998 7899999999999999999999998542 2223111 0000 011111 0112222
Q ss_pred CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh
Q 000778 1078 GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1078 g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~ 1156 (1288)
...+++... ++ ++.++++.+++++.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+++++..+
T Consensus 92 t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 92 TVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE-VRALLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 233333222 44 56677888888999999999999988888875554 44667777654478999999999998877
Q ss_pred cCCCceEEeee
Q 000778 1157 KKDPRVSLCHM 1167 (1288)
Q Consensus 1157 ~~~~~v~~~~~ 1167 (1288)
++ ++..+..
T Consensus 168 ~d--~i~~l~~ 176 (178)
T cd03229 168 AD--RVVVLRD 176 (178)
T ss_pred cC--EEEEEeC
Confidence 87 6665543
No 170
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.4e-15 Score=174.46 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=108.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.+|++|.+ .+|++++|+||||+|||||||+|+|+.- . ...| .|+|+...
T Consensus 52 ~~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 52 FEAVKKVNADI-LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 46889999999 7899999999999999999999998631 1 0111 23444321
Q ss_pred cc--chHHHH----------------------HHhcCc----hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 EI--SPVDRI----------------------FVRMGA----KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~l--~~~d~i----------------------~~~ig~----~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+ ++.+.+ +..+|. .+.+......++ ++.++++.+.+++.+|+|||||||+
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 222222 111221 112222334555 5666778888899999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+.. +.++|++||+++++..+++ ++.+++.|.++..|
T Consensus 211 ~gLD~~~~~~l~-~~L~~~~~--~~tvIivsH~~~~~~~~~d--~i~~L~~G~i~~~g 263 (286)
T PRK14275 211 SALDPKATAKIE-DLIQELRG--SYTIMIVTHNMQQASRVSD--YTMFFYEGVLVEHA 263 (286)
T ss_pred ccCCHHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888887655443 56666643 5799999999999988888 88888888877655
No 171
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.63 E-value=4.8e-16 Score=166.53 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=103.2
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc------cc----cc--ccccchHH------HHHHh
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD------VP----AE--IFEISPVD------RIFVR 1076 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~------vP----a~--~~~l~~~d------~i~~~ 1076 (1288)
+.++++|.+ .+|++++|+||||+|||||||+|+|+.- ...|.. +. .. ...++++. .++..
T Consensus 15 ~l~~vs~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEV-RAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 789999999 7899999999999999999999998642 222311 10 00 01122211 13334
Q ss_pred cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1077 MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+...+++..... ++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++ +.++|++||+++.+..
T Consensus 93 ~t~~e~l~~~~~-LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~-~~tiii~sh~~~~~~~ 169 (182)
T cd03215 93 LSVAENIALSSL-LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADA-GKAVLLISSELDELLG 169 (182)
T ss_pred CcHHHHHHHHhh-cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 455555543211 44 5566778888889999999999999999988666544 566666554 7899999999999888
Q ss_pred hcCCCceEEeeeE
Q 000778 1156 YKKDPRVSLCHMA 1168 (1288)
Q Consensus 1156 ~~~~~~v~~~~~~ 1168 (1288)
+++ ++.+++.|
T Consensus 170 ~~d--~v~~l~~G 180 (182)
T cd03215 170 LCD--RILVMYEG 180 (182)
T ss_pred hCC--EEEEecCC
Confidence 887 77776654
No 172
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.63 E-value=1.6e-15 Score=172.40 Aligned_cols=159 Identities=18% Similarity=0.127 Sum_probs=113.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---- 1065 (1288)
..+++|++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+...
T Consensus 25 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNVSLSL-KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 46899999999 78999999999999999999999985311 111234444320
Q ss_pred -ccchH----------------------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 -EISPV----------------------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 -~l~~~----------------------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
...+. ..++.++|.. +........++ ++.++++.+++++.+|++||||||++|.|
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 11111 1223334443 23333444555 56677888888999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..... ...+++.+.++.++++|++||+.+++..+++ ++..+..|.++..+.
T Consensus 184 ~~~~~~-~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d--~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 184 LVLQAG-VIRLLKKLQQQFGTACLFITHDLRLVERFCQ--RVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHH-HHHHHHHHHHHcCcEEEEEECCHHHHHHhCC--EEEEEECCEEeeeCC
Confidence 865443 4466767765557899999999999998888 888888888776653
No 173
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=174.20 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=111.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCccccccc----ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEI----FEI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~----~~l 1067 (1288)
.+..+++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. ...
T Consensus 16 ~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 16 EALKGINFKA-EKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 5788999999 78999999999999999999999985311 11123455542 111
Q ss_pred chHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
.+.+.+ +.++|..+.......++| ++.++++.+.+++.+|+|+|||||++|.|+....
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 174 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 222222 222333222223334555 4556677888889999999999999999988666
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+. .++..+.+. +.++|++||+++.+..+++ ++.+++.|.++..|+
T Consensus 175 ~l~-~~l~~l~~~-~~til~vtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 175 QIM-KLLYDLNKE-GITIIISTHDVDLVPVYAD--KVYVMSDGKIIKEGT 220 (275)
T ss_pred HHH-HHHHHHHHC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 554 566666554 8899999999999988888 899998888876653
No 174
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.63 E-value=1.4e-15 Score=171.79 Aligned_cols=157 Identities=21% Similarity=0.181 Sum_probs=111.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~~ 1069 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++
T Consensus 14 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 14 RLIVDGVDVTA-PPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 46889999999 78999999999999999999999985310 111235554421 1222
Q ss_pred HHHH-------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDRI-------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~i-------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+ +.+++..+.+......++ ++.++++.+.+++.+|+|+|||||++|.|+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 2222 223333333333344555 45566777888899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.++ +.++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 173 ~~~l-~~~l~~~~~~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 219 (256)
T TIGR03873 173 QLET-LALVRELAAT-GVTVVAALHDLNLAASYCD--HVVVLDGGRVVAAG 219 (256)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEEeCCHHHHHHhCC--EEEEEeCCCEEEec
Confidence 5544 4667777554 7899999999999988888 88888888766543
No 175
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.1e-15 Score=178.22 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=114.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---- 1065 (1288)
..+++||+|++ .+|++++|+|+||||||||+++|+++.-. ...-.+||+...
T Consensus 28 ~~~l~~vsl~i-~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTL-ERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 36899999999 78999999999999999999999985311 011134554321
Q ss_pred -ccchH----------------------HHHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 -EISPV----------------------DRIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 -~l~~~----------------------d~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+.+. ..++.++|..+ .+......+++ +.++++.+++++.+|+|||+|||++|.|
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 11111 12233444432 23334456665 4456778888899999999999988887
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
......+ ..+|..+.++.|.++||+|||+.++..+++ +|.+++.|.++..|.
T Consensus 187 ~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~ad--rv~vm~~G~ive~g~ 238 (327)
T PRK11308 187 VSVQAQV-LNLMMDLQQELGLSYVFISHDLSVVEHIAD--EVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 7755544 356666766568999999999999999998 999999999998764
No 176
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2e-15 Score=170.18 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=108.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.- . ...| .|+|+...
T Consensus 19 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 19 FQALHDISLEF-EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeeecceeEEE-eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 36889999999 7899999999999999999999998631 1 1112 23443321
Q ss_pred c--cchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. ..++..+ .+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12223221 1112111 1122234455 4556677788889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+. + +.++|++||+.+.+..+++ +|..++.|.++..+
T Consensus 178 ~~LD~~~~~~l-~~~l~~~~-~-~~tvii~tH~~~~~~~~~d--~v~~l~~G~i~~~g 230 (253)
T PRK14242 178 SALDPIATQKI-EELIHELK-A-RYTIIIVTHNMQQAARVSD--VTAFFYMGKLIEVG 230 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCeEEEEEecHHHHHHhCC--EEEEEECCEEEEeC
Confidence 99888765554 45666663 3 6899999999999988888 88899888877654
No 177
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.4e-15 Score=173.27 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc----ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF----EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~----~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..+
T Consensus 22 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 22 NNALKNVSFEI-NEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred ccceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 46899999999 78999999999999999999999986411 111235554421 122
Q ss_pred hHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 000778 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1288)
Q Consensus 1069 ~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~a 1126 (1288)
+.+.+ +.++|..+.+......++ ++.++++.+.+++.+|+|+|||||++|.|+.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 22222 233344433444445566 55667788888899999999999988888875544
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1127 IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1127 ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...++..+.++.+.++|++||+++.+. .++ ++.+++.|.++..+
T Consensus 181 -l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d--~v~~l~~G~i~~~g 224 (271)
T PRK13632 181 -IKKIMVDLRKTRKKTLISITHDMDEAI-LAD--KVIVFSEGKLIAQG 224 (271)
T ss_pred -HHHHHHHHHHhcCcEEEEEEechhHHh-hCC--EEEEEECCEEEEec
Confidence 446666665543589999999999885 566 88888888876554
No 178
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.63 E-value=1.1e-15 Score=172.82 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=113.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-----------------Hh------------hcCcccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------LA------------QVGADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-----------------la------------q~G~~vPa~ 1063 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+.- +. +...|+|+.
T Consensus 19 ~~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDL-YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEE-eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 36889999999 7899999999999999999999998531 10 012355544
Q ss_pred cc-----ccchHH----------------------HHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1064 IF-----EISPVD----------------------RIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1064 ~~-----~l~~~d----------------------~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
.. .+...+ .++..++... .+.....+++ ++.++++.+.+++.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 21 011111 1233444432 3344455666 56667888888999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++|.|+.....+ ..++..+.++.|.++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 178 Pt~~LD~~~~~~l-~~~l~~~~~~~~~tii~isH~~~~~~~~~d--~i~~l~~g~i~~~~ 234 (258)
T PRK11701 178 PTGGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAH--RLLVMKQGRVVESG 234 (258)
T ss_pred CcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcC--EEEEEECCEEEEeC
Confidence 9888888754443 455666655457899999999999998888 88999999887665
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.63 E-value=1.9e-15 Score=167.46 Aligned_cols=163 Identities=19% Similarity=0.216 Sum_probs=109.7
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------ 1053 (1288)
+.|.+++.+..+ ++..+.+|++|.+ .+|++++|+||||+|||||||+|+|+...
T Consensus 6 ~~i~~~~l~~~~-------~~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 6 PLLQLQNVGYLA-------GDAKILNNISFSL-RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred ceEEEeccEEee-------CCceeeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHH
Confidence 346666555322 1246899999999 78999999999999999999999986411
Q ss_pred --hhcCccccccccc--cchHH-------------------HHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCc
Q 000778 1054 --AQVGADVPAEIFE--ISPVD-------------------RIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNS 1108 (1288)
Q Consensus 1054 --aq~G~~vPa~~~~--l~~~d-------------------~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~s 1108 (1288)
.+..+|+|+.... .++.+ .++..++..+ ........++ ++.++++.+.+++.+|+
T Consensus 78 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1112345543210 12222 2333444432 2333445555 56667888888999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1109 LVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1109 LvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
++|||||++|.|+.....+ ..++..+.++.++++|++||+++.+. .++ ++..++
T Consensus 158 llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sh~~~~~~-~~d--~i~~l~ 211 (225)
T PRK10247 158 VLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEIN-HAD--KVITLQ 211 (225)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECChHHHH-hCC--EEEEEe
Confidence 9999999999888755543 45666665545889999999999886 466 666663
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.5e-15 Score=173.76 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=110.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCccccccc----c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI----F 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~----~ 1065 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.. .
T Consensus 21 ~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDVNLTI-EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 5788999999 78999999999999999999999986310 01123555542 1
Q ss_pred ccchHHHH---------------------HHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 EISPVDRI---------------------FVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ~l~~~d~i---------------------~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
...+.+.+ +..+|... ........++ ++.++++.+.+++.+|+|+|||||++|.|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 11222222 22233321 2233344566 4556677888889999999999998888887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ ..+|..+.+. +.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 180 ~~~~l-~~~l~~~~~~-~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~g 227 (280)
T PRK13649 180 GRKEL-MTLFKKLHQS-GMTIVLVTHLMDDVANYAD--FVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEeccHHHHHHhCC--EEEEEECCEEEEeC
Confidence 65544 4566666554 7899999999999988888 88888888876554
No 181
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.9e-15 Score=168.14 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=112.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~---~l~~~d 1071 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+.-.. +.-.++|+... .+++.+
T Consensus 13 ~~il~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 13 FVALDGVSLDI-KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeeccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 35788999998 789999999999999999999999864210 11123443321 112222
Q ss_pred ---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 000778 1072 ---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAE 1129 (1288)
Q Consensus 1072 ---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ 1129 (1288)
.++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~ 170 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM-Q 170 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 22333444444444445565 566678888889999999999999999888865544 4
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.++..+.++.++|+|++||+.+++..+++ ++..++.|.++..+
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d--~i~~l~~G~~~~~~ 213 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSD--RIAVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcC--EEEEEECCEEEecC
Confidence 56666765448899999999999888888 88888888776554
No 182
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.63 E-value=1.1e-15 Score=162.23 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=97.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc----------cccchHH---HHHHhcCc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI----------FEISPVD---RIFVRMGA 1079 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~----------~~l~~~d---~i~~~ig~ 1079 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+.- ...|... .... ..++++. .+|. ..+
T Consensus 16 ~~l~~~~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (173)
T cd03246 16 PVLRNVSFSI-EPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSI 92 (173)
T ss_pred cceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcH
Confidence 5788899998 7899999999999999999999998643 2223211 0000 0111110 1121 123
Q ss_pred hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1080 KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1080 ~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.+++ ++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++ +.++|++||+++++. .++
T Consensus 93 ~~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~-~~tii~~sh~~~~~~-~~d 163 (173)
T cd03246 93 AENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAA-GATRIVIAHRPETLA-SAD 163 (173)
T ss_pred HHHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCHHHHH-hCC
Confidence 3333 44 5667788888899999999999998888888666544 566666554 889999999999874 566
Q ss_pred CCceEEeeeE
Q 000778 1159 DPRVSLCHMA 1168 (1288)
Q Consensus 1159 ~~~v~~~~~~ 1168 (1288)
++.+++.|
T Consensus 164 --~v~~l~~G 171 (173)
T cd03246 164 --RILVLEDG 171 (173)
T ss_pred --EEEEEECC
Confidence 77666654
No 183
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=175.47 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=109.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------------------------hcCcccccccc---
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------------------------QVGADVPAEIF--- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------------------------q~G~~vPa~~~--- 1065 (1288)
.+.++++|++ .+|++++|+||||||||||||+|+|+.... +.-.|+|+...
T Consensus 25 ~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTF-KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 5889999999 789999999999999999999999864210 01134444320
Q ss_pred -ccchHHHH---------------------HHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1066 -EISPVDRI---------------------FVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1066 -~l~~~d~i---------------------~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
...+.+.+ +..++.. +......+.++ ++.++++.+.+++.+|+|||||||++|.|+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 11222221 1222221 12222334555 555667888888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..... .+.++..+.++.++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 184 ~~~~~-l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d--~i~~l~~G~i~~~g 233 (289)
T PRK13645 184 KGEED-FINLFERLNKEYKKRIIMVTHNMDQVLRIAD--EVIVMHEGKVISIG 233 (289)
T ss_pred HHHHH-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 76554 4466666655448899999999999888888 88889888877554
No 184
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.63 E-value=1.1e-15 Score=164.73 Aligned_cols=138 Identities=20% Similarity=0.150 Sum_probs=96.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------hhcCcccccccc----c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------AQVGADVPAEIF----E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------aq~G~~vPa~~~----~ 1066 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .
T Consensus 5 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAA-ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 46889999999 78999999999999999999999985411 111234554421 1
Q ss_pred cchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+. ++..+|..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 122222 2233444444444455666 566677888888999999999999999998765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
..+ ..++..+.++ ++++|++||+.+++
T Consensus 164 ~~~-~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQM-LAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred HHH-HHHHHHHHHc-CCEEEEEeeccccC
Confidence 554 4666667554 88999999998753
No 185
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.63 E-value=9.1e-16 Score=157.23 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=112.4
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc---------cccccc--ccchHHHHHHh----------
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD---------VPAEIF--EISPVDRIFVR---------- 1076 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~---------vPa~~~--~l~~~d~i~~~---------- 1076 (1288)
.+++.+ ..|++++|+||+|+||||||+.|+|....++-... -|++.. .+..-..+|+.
T Consensus 17 ~fdl~v-~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 17 RFDLTV-PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEEee-cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 445566 67899999999999999999999997654332111 133221 11111234444
Q ss_pred ---------------------cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1077 ---------------------MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1077 ---------------------ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
+|..+...+-..+++ +|.++++.+..+..+..++|||||++..+|.-.... .+++..
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM-l~Lv~~ 174 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM-LALVSQ 174 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH-HHHHHH
Confidence 444444444344455 577788888889999999999999999998865543 478888
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++.+.+.|+||+||..+.+..+.+ +++++..|++...|.
T Consensus 175 l~~E~~~TllmVTH~~~Da~~ia~--~~~fl~~Gri~~~g~ 213 (231)
T COG3840 175 LCDERKMTLLMVTHHPEDAARIAD--RVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHhhCCEEEEEeCCHHHHHHhhh--ceEEEeCCEEEeecc
Confidence 888889999999999999999988 999999999887763
No 186
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.1e-15 Score=175.06 Aligned_cols=156 Identities=18% Similarity=0.131 Sum_probs=111.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-----------------------cCccccccc----cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----------------------VGADVPAEI----FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-----------------------~G~~vPa~~----~~ 1066 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+....+ ...|+|+.. ..
T Consensus 21 ~~l~~v~l~i-~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 21 PALNDISFSI-PRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred cceeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 5889999999 7899999999999999999999998653211 112444432 11
Q ss_pred cchHHHH---------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1067 l~~~d~i---------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..+.+.+ +..+|..+.+......++ ++.++++.+.+++.+|+|||||||++|.|+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 1222222 233343333333445565 556677888888999999999999999988866
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+. .++..+.++.|+++|++||+++++. .++ ++.+++.|.++..+
T Consensus 180 ~~l~-~~l~~l~~~~g~tvli~tH~~~~~~-~~d--~i~~l~~G~i~~~g 225 (282)
T PRK13640 180 EQIL-KLIRKLKKKNNLTVISITHDIDEAN-MAD--QVLVLDDGKLLAQG 225 (282)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEecCHHHHH-hCC--EEEEEECCEEEEeC
Confidence 5544 5666676545889999999999985 576 88899999887665
No 187
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.63 E-value=2.1e-15 Score=169.54 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=109.4
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH--
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV-- 1070 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~-- 1070 (1288)
++++++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+++.
T Consensus 11 ~l~~vsl~i-~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEV-RAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 678999998 78999999999999999999999986410 011124444321 11111
Q ss_pred ------------------HHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCC-------CCcEEEEeCCCCCCChHHH
Q 000778 1071 ------------------DRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSAT-------RNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 ------------------d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~-------~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+.++.++|..+.+......+++ +.++++.+.+++. +|+++|||||++|.|+...
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 2334445555444555566774 4455666666665 6799999999999988865
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+. .++..+.++ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 170 ~~l~-~~L~~~~~~-~~tvi~~sH~~~~~~~~~d--~i~~l~~G~i~~~g 215 (248)
T PRK03695 170 AALD-RLLSELCQQ-GIAVVMSSHDLNHTLRHAD--RVWLLKQGKLLASG 215 (248)
T ss_pred HHHH-HHHHHHHhC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 5544 666667554 7899999999999888888 88888888776544
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.62 E-value=1.5e-15 Score=179.19 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=111.0
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---ccchH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+++|.+ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .+++.
T Consensus 15 ~isl~i-~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTL-PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 789998 78999999999999999999999986411 011124444321 12222
Q ss_pred HH-------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1071 DR-------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1071 d~-------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+. ++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l-~~ 172 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI-LP 172 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH-HH
Confidence 22 2333444444444456666 455667888888999999999999888888765544 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|..+.++.+.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 173 ~L~~l~~~~g~tiiivtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 215 (354)
T TIGR02142 173 YLERLHAEFGIPILYVSHSLQEVLRLAD--RVVVLEDGRVAAAGP 215 (354)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEeCCEEEEECC
Confidence 6666765558899999999999988888 899999998886654
No 189
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.62 E-value=2e-15 Score=169.55 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=109.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---------------------------hcCccccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------------------------QVGADVPAEIFE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------------------------q~G~~vPa~~~~ 1066 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.... +.-.|+|+....
T Consensus 15 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 15 EALKNINLDI-PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeecceeEEE-CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 5788999999 789999999999999999999999865211 111234433211
Q ss_pred --cchHHHH----------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRI----------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i----------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
..+.+.+ +..+|.. +.+......++ ++.++++.+.+++.+|+++|||||++
T Consensus 94 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 173 (247)
T TIGR00972 94 FPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173 (247)
T ss_pred CCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2222222 1222332 22333344555 45566778888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 174 ~LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 174 ALDPIATGKI-EELIQELKK--KYTIVIVTHNMQQAARISD--RTAFFYDGELVEYG 225 (247)
T ss_pred cCCHHHHHHH-HHHHHHHHh--cCeEEEEecCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 8888865544 466666654 4799999999999988888 89999998877654
No 190
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.62 E-value=1.9e-15 Score=186.39 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=115.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF------- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~------- 1065 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+.-.++|+...
T Consensus 16 ~~il~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 16 TKTLQLPSLTL-NAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred eeecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 35889999999 78999999999999999999999986411 010123333210
Q ss_pred ----ccch-------------HHHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1066 ----EISP-------------VDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1066 ----~l~~-------------~d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+.+ +..++.++|..+......+++|+ +.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 0111 22345566666655666777885 45567777888999999999999888888865544
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..++..+.++ |.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 175 -~~~l~~~~~~-g~tvii~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 217 (490)
T PRK10938 175 -AELLASLHQS-GITLVLVLNRFDEIPDFVQ--FAGVLADCTLAETG 217 (490)
T ss_pred -HHHHHHHHhc-CCeEEEEeCCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 4677777654 8899999999999999888 88888888876544
No 191
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.62 E-value=1.7e-15 Score=176.89 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=120.4
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------- 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------- 1054 (1288)
+.|++++....+-.. .+...++++++|++ .+|++++|+|+||||||||+++|+++.-..
T Consensus 11 ~~L~i~~l~~~~~~~---~~~~~~l~~vsl~i-~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 11 ALLDVKDLRVTFSTP---DGDVTAVNDLNFSL-RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred ceEEEeCeEEEEecC---CCCEEEEeeeEEEE-cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 456666654332110 11235899999999 789999999999999999999999865221
Q ss_pred ----------hcCcccccccc-----ccchHHH----------------------HHHhcCchh---hHhhcccchHHH-
Q 000778 1055 ----------QVGADVPAEIF-----EISPVDR----------------------IFVRMGAKD---HIMAGQSTFLTE- 1093 (1288)
Q Consensus 1055 ----------q~G~~vPa~~~-----~l~~~d~----------------------i~~~ig~~d---~i~~~~Stf~~e- 1093 (1288)
..-.+||+... .+.+.+. ++..+|..+ .+......+|++
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 01134554421 1112221 122233221 112234456644
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1094 ~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.++++.+.+++.+|+|||+|||++|.|..-...+ ..+|..+.++.+.++||+|||++++..+++ +|.+++.|.++..
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~~D--ri~vm~~G~ive~ 243 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI-MTLLNELKREFNTAIIMITHDLGVVAGICD--KVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEECCHHHHHHhCC--EEEEEECCEEEEE
Confidence 4567788888999999999999888877755544 466777766668999999999999998888 9999999999987
Q ss_pred CC
Q 000778 1174 GV 1175 (1288)
Q Consensus 1174 g~ 1175 (1288)
|.
T Consensus 244 g~ 245 (330)
T PRK09473 244 GN 245 (330)
T ss_pred CC
Confidence 64
No 192
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=179.25 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=112.6
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------------hcCcccccccc---ccchH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------------QVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------------q~G~~vPa~~~---~l~~~ 1070 (1288)
|++|++ .+|++++|+||||||||||||+|+|+.-.. +.-.|+|+... .+.+.
T Consensus 16 ~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTL-PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 789998 789999999999999999999999864110 01123444321 11222
Q ss_pred ---------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1071 ---------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1071 ---------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
+.++..+|..+.+.....+++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.+|..
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l-~~~L~~ 173 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-LPYLER 173 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-HHHHHH
Confidence 223445555555555556676 455678888889999999999999888888765544 456666
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.++.+.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d--~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLAD--RVVVLEQGKVKAFGP 212 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCC--EEEEEeCCEEEEecC
Confidence 766558899999999999999898 899999999887654
No 193
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=172.73 Aligned_cols=156 Identities=20% Similarity=0.168 Sum_probs=109.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hhcCccccccccc-----cch-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQVGADVPAEIFE-----ISP- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq~G~~vPa~~~~-----l~~- 1069 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+.... ..+
T Consensus 20 ~~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 20 HTALRDASFTV-PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred cEEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 46889999999 78999999999999999999999986411 0112345543210 000
Q ss_pred ------------------------HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1070 ------------------------VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1070 ------------------------~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+..++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 1123344455444444455666 455667788888999999999999999888866
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ ..+|..+.++ |+++|++||+++.+..+++ +++++ .|.++..|
T Consensus 179 ~~l-~~~L~~~~~~-g~tviivsH~~~~~~~~~d--~v~~~-~G~i~~~g 223 (272)
T PRK15056 179 ARI-ISLLRELRDE-GKTMLVSTHNLGSVTEFCD--YTVMV-KGTVLASG 223 (272)
T ss_pred HHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEE-CCEEEeec
Confidence 655 4666667554 7899999999999888888 56555 56665544
No 194
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.62 E-value=1.6e-15 Score=171.74 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=108.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------ccccccc---cccchHHHH-------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEI---FEISPVDRI------- 1073 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa~~---~~l~~~d~i------- 1073 (1288)
...+.++++|.+ .+|++++|+||||+||||||++|+|+... ..| .+++... ..+++.+.+
T Consensus 36 ~~~il~~is~~i-~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~ 113 (264)
T PRK13546 36 TFFALDDISLKA-YEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCM 113 (264)
T ss_pred ceEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHc
Confidence 346889999999 78999999999999999999999996532 112 1111111 112222222
Q ss_pred --------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1074 --------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1074 --------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
+..++..+.+.....+++ +++++++.+.+++.+|++||||||++|.|+.....+ ..++..+.+
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l-~~~L~~~~~- 191 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC-LDKIYEFKE- 191 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH-HHHHHHHHH-
Confidence 222233333334445566 566677888888999999999999888887754443 455666654
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.++++|++||+.+.+..+++ +|..++.|.++..
T Consensus 192 ~g~tiIiisH~~~~i~~~~d--~i~~l~~G~i~~~ 224 (264)
T PRK13546 192 QNKTIFFVSHNLGQVRQFCT--KIAWIEGGKLKDY 224 (264)
T ss_pred CCCEEEEEcCCHHHHHHHcC--EEEEEECCEEEEe
Confidence 48899999999999988888 7888887766543
No 195
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.62 E-value=1.4e-15 Score=188.14 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=114.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhc-Ccccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQV-GADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~-G~~vPa~~~---~l~ 1068 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+... ... -.|+|+... .+.
T Consensus 24 ~~il~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 24 VEVLKGIDFTL-HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred ceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 46889999999 78999999999999999999999986411 001 124554321 112
Q ss_pred hHHH-----------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1069 PVDR-----------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1069 ~~d~-----------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+.+. ++..+|..+......+++|+ +.++++.+.+++.+|++||||||++|.|+.....+ ..
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l-~~ 181 (510)
T PRK15439 103 VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL-FS 181 (510)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HH
Confidence 2222 23344444444445566774 55567777788999999999999888888865544 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|..+.++ |.++|++||+.+++..+++ +|.+++.|.++..|.
T Consensus 182 ~l~~~~~~-g~tiiivtHd~~~~~~~~d--~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 182 RIRELLAQ-GVGIVFISHKLPEIRQLAD--RISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 67777654 8899999999999998888 899999998876654
No 196
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.2e-15 Score=169.94 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=110.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhc-----------------------Ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQV-----------------------GADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~-----------------------G~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... ... -.|+|+...
T Consensus 33 ~~il~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 33 KEAIKGIDMQF-EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 46899999999 78999999999999999999999997521 011 134444321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 191 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12222221 112211 11223344566 5566778888889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.|+.....+ ..++..+. + +.++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 192 ~~LD~~~~~~l-~~~l~~~~-~-~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 192 SALDPISTMQL-EETMFELK-K-NYTIIIVTHNMQQAARASD--YTAFFYLGDLIEYDK 245 (267)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCEEEEEecCHHHHHHhcC--EEEEEECCEEEEeCC
Confidence 99988765544 45666664 3 6799999999999988888 899999998877653
No 197
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.4e-15 Score=168.37 Aligned_cols=170 Identities=19% Similarity=0.145 Sum_probs=115.8
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G---------- 1057 (1288)
+.|.+++..+.+- +..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..|
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFYT-------DFKALNNINIKI-LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEeC-------CceeecceeeEE-cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 3567776654331 235889999999 789999999999999999999999865320 011
Q ss_pred -------------cccccccc--ccchHHHHH----------------------HhcCc----hhhHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIF--EISPVDRIF----------------------VRMGA----KDHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~--~l~~~d~i~----------------------~~ig~----~d~i~~~~Stf~-~e~~ 1095 (1288)
+|+|+... ..++.+.+. ..++. .+........++ ++.+
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 23443321 123333321 11111 011122234455 4556
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++.+.+++.+|+|||||||++|.|+.....+. .++..+. + ++++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~-~-~~tvii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 231 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLK-E-SYTIIIVTHNMQQAGRISD--RTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHh-c-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 677888889999999999999998888665544 5666664 3 6899999999999988888 88899888887665
No 198
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=187.73 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=113.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------h-hcCccccccc---cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------A-QVGADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------a-q~G~~vPa~~---~~l~ 1068 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-. . +.-.|||+.. ..+.
T Consensus 18 ~~il~~vs~~i-~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 18 VHALKSVNLTV-YPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred eEEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 46889999999 78999999999999999999999986411 1 1123455432 1122
Q ss_pred hHHH----------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1069 PVDR----------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1069 ~~d~----------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+.+. ++..+|..+......+++|+ +.++++.+.+++.+|++||||||++|.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 2222 22333433333344566664 555677777889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+.....+ ..++..+.++ |.++|++||+.+++..+++ +|.+++.|.++..|.
T Consensus 177 D~~~~~~l-~~~l~~l~~~-g~tiiivsHd~~~~~~~~d--~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 177 TNKEVDYL-FLIMNQLRKE-GTAIVYISHKLAEIRRICD--RYTVMKDGSSVCSGM 228 (510)
T ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEeeecc
Confidence 88755544 4677777654 8899999999999998888 888998888876543
No 199
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.62 E-value=2.2e-15 Score=160.80 Aligned_cols=147 Identities=19% Similarity=0.140 Sum_probs=101.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc---------cccchHH---HHHHhcCch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI---------FEISPVD---RIFVRMGAK 1080 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~---------~~l~~~d---~i~~~ig~~ 1080 (1288)
.+..+++|++ .+|++++|+||||+|||||||+|+|+.- ...|... .... ..++++. .++. ....
T Consensus 16 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 16 QVLKNLSLEL-KQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred cceEEEEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 5788999999 7899999999999999999999998642 2223211 0000 0011110 1121 2334
Q ss_pred hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCC
Q 000778 1081 DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKD 1159 (1288)
Q Consensus 1081 d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~ 1159 (1288)
+++ ...++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+. + ++++|++||+++++. .++
T Consensus 93 ~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tii~~sh~~~~~~-~~d- 164 (178)
T cd03247 93 NNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL-LSLIFEVL-K-DKTLIWITHHLTGIE-HMD- 164 (178)
T ss_pred Hhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHc-C-CCEEEEEecCHHHHH-hCC-
Confidence 444 33444 566778888889999999999999888888755544 45666663 3 789999999999886 466
Q ss_pred CceEEeeeEEEEe
Q 000778 1160 PRVSLCHMACQVG 1172 (1288)
Q Consensus 1160 ~~v~~~~~~~~~~ 1172 (1288)
++..++.|.++.
T Consensus 165 -~~~~l~~g~i~~ 176 (178)
T cd03247 165 -KILFLENGKIIM 176 (178)
T ss_pred -EEEEEECCEEEe
Confidence 888888877654
No 200
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.62 E-value=2.9e-15 Score=165.16 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=104.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+... .....|+|+.... ..+.
T Consensus 17 ~~~l~~i~~~i-~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 17 IPALDNVSLTI-RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95 (220)
T ss_pred cccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence 35889999999 78999999999999999999999986411 1112345544211 1222
Q ss_pred HH---------------HHHhcCchhhHhhc-----------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DR---------------IFVRMGAKDHIMAG-----------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~---------------i~~~ig~~d~i~~~-----------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+. ++..++..+.+... ...++ ++.++++.+.+++.+|+|+|||||++|.|+..
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~ 175 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 22 22233333322221 13566 45566777788899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
...+. .++..+.+ ++++|++||++++. .+++ ++..++.|.++.
T Consensus 176 ~~~l~-~~l~~~~~--~~tii~~sH~~~~~-~~~d--~v~~l~~g~i~~ 218 (220)
T cd03245 176 EERLK-ERLRQLLG--DKTLIIITHRPSLL-DLVD--RIIVMDSGRIVA 218 (220)
T ss_pred HHHHH-HHHHHhcC--CCEEEEEeCCHHHH-HhCC--EEEEEeCCeEee
Confidence 66554 55555643 37999999999986 5676 888888776653
No 201
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.9e-15 Score=174.18 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=121.6
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------- 1053 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------- 1053 (1288)
.+.|.+++...-+-.. ...+..++++++|.+ .+|++++|+||||||||||||+|+|+...
T Consensus 19 ~~~l~~~nl~~~y~~~--~~~~~~~L~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEK--QENELVALNNISYTF-EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCC--CcccccceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 3567777765433110 001236899999999 78999999999999999999999985311
Q ss_pred -------------------hhcCccccccc----cccchHHH---------------------HHHhcCch-hhHhhccc
Q 000778 1054 -------------------AQVGADVPAEI----FEISPVDR---------------------IFVRMGAK-DHIMAGQS 1088 (1288)
Q Consensus 1054 -------------------aq~G~~vPa~~----~~l~~~d~---------------------i~~~ig~~-d~i~~~~S 1088 (1288)
.+.-.+|++.. ...++.+. ++..+|.. +.......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 00112444432 01122222 22233332 22333344
Q ss_pred chH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1089 TFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1089 tf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+++ ++.++++.+.+++.+|++||||||++|.|+.....+. .++..+.++ ++|+|++||+++.+..+++ +|.+++.
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~-g~TiiivtHd~~~~~~~ad--ri~vl~~ 251 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKAN-NKTVFVITHTMEHVLEVAD--EVIVMDK 251 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCHHHHHHhCC--EEEEEEC
Confidence 565 5666788888899999999999998888888665544 666666554 8899999999999888888 9999999
Q ss_pred EEEEecCC
Q 000778 1168 ACQVGNGV 1175 (1288)
Q Consensus 1168 ~~~~~~g~ 1175 (1288)
|.++..|.
T Consensus 252 G~i~~~g~ 259 (320)
T PRK13631 252 GKILKTGT 259 (320)
T ss_pred CEEEEeCC
Confidence 99887663
No 202
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=3e-15 Score=166.93 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=111.0
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh------------------hcCccccccccc---cchHHH-
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------QVGADVPAEIFE---ISPVDR- 1072 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila------------------q~G~~vPa~~~~---l~~~d~- 1072 (1288)
+.++++|++ .+|++++|+||||+|||||||+|+|+.-.. +.-.++|+.... +.+.+.
T Consensus 14 ~l~~is~~i-~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEV-ERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 688999998 789999999999999999999999853110 011234433211 111111
Q ss_pred --------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1073 --------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1073 --------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
++..+|....+.....+++ ++.++++.+.+++.+|+++|||||++|.|+..... .+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~-l~~~ 171 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK-LREE 171 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHH-HHHH
Confidence 2233444433444445566 56667888888999999999999988888885554 4566
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+..+..+.++++|++||+++.+..+++ ++..++.|.++..+
T Consensus 172 l~~~~~~~~~tili~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 212 (235)
T cd03299 172 LKKIRKEFGVTVLHVTHDFEEAWALAD--KVAIMLNGKLIQVG 212 (235)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCC--EEEEEECCEEEEec
Confidence 777765558999999999999888888 88888888776554
No 203
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4e-15 Score=167.46 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=108.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--HHh--hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--ILA--QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--ila--q~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+. +.. ..| .|+|+...
T Consensus 16 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEI-EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEE-eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 35889999999 789999999999999999999998752 110 012 33443321
Q ss_pred c--cchHHHH----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+ +..++..+ .+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 1222222 11222211 1122223455 5666788888899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.|+.....+ ..++..+. + ++++|++||+++.+..+++ ++.+++.|.++..+.
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d--~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 175 SALDPISTAKV-EELIHELK-K-DYTIVIVTHNMQQAARVSD--KTAFFYMGEMVEYDD 228 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHhhCC--EEEEEECCEEEEECC
Confidence 99888865544 46666663 3 6899999999999988888 899999998877653
No 204
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=2.8e-15 Score=164.80 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=109.1
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------h
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------A 1054 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------a 1054 (1288)
+.|.+++..+-+ .+..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. .
T Consensus 10 ~~l~~~~l~~~~-------~~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSR-------NEEPVFGPLDFHV-DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEec-------CCceeeecceEEE-CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhh
Confidence 446666554322 1246899999999 78999999999999999999999986411 1
Q ss_pred hcCcccccccc---ccchHHHH------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1055 QVGADVPAEIF---EISPVDRI------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1055 q~G~~vPa~~~---~l~~~d~i------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
....|+|+... .+++.+.+ +..++..+........++ ++.++++.+..++.+|+++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11224443321 12233322 222333322233334455 566678888888999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEe
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC 1165 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~ 1165 (1288)
|||++|.|+..... ...++..+.++ ++++|++||+++.+..+++ ++..+
T Consensus 162 DEPt~~LD~~~~~~-l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~--~i~~l 210 (214)
T PRK13543 162 DEPYANLDLEGITL-VNRMISAHLRG-GGAALVTTHGAYAAPPVRT--RMLTL 210 (214)
T ss_pred eCCcccCCHHHHHH-HHHHHHHHHhC-CCEEEEEecChhhhhhhcc--eEEEE
Confidence 99988888875554 44677766554 7899999999999988887 55544
No 205
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.2e-15 Score=159.75 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=96.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-cccc----------cccchH---HHHHHhcCc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEI----------FEISPV---DRIFVRMGA 1079 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~~----------~~l~~~---d~i~~~ig~ 1079 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+.. ...|... .... ..++++ ..+|. ...
T Consensus 16 ~~l~~i~~~i-~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTI-KPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 5788999998 7899999999999999999999998643 2223211 0000 011111 01221 233
Q ss_pred hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1080 KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1080 ~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.+++ ++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++..+. + ++++|++||+++.+.. ++
T Consensus 93 ~e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d 162 (171)
T cd03228 93 RENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALA-K-GKTVIVIAHRLSTIRD-AD 162 (171)
T ss_pred HHHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhc-C-CCEEEEEecCHHHHHh-CC
Confidence 3443 44 566677888888999999999999999998765544 45666664 3 6899999999999876 76
Q ss_pred CCceEEeeeE
Q 000778 1159 DPRVSLCHMA 1168 (1288)
Q Consensus 1159 ~~~v~~~~~~ 1168 (1288)
++..++.|
T Consensus 163 --~~~~l~~g 170 (171)
T cd03228 163 --RIIVLDDG 170 (171)
T ss_pred --EEEEEcCC
Confidence 66666543
No 206
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=167.85 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=114.9
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G---------- 1057 (1288)
+.|.+++...-+ .+..++++++|.+ .+|++++|+||||+||||||++|+|+.-. . ..|
T Consensus 11 ~~l~i~~l~~~~-------~~~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 11 EVYQINGMNLWY-------GQHHALKNINLSI-PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred ceEEEeeEEEEE-------CCeeeEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 346666654322 1236889999999 78999999999999999999999986431 0 112
Q ss_pred -------------ccccccccc--cchHHHH----------------------HHhcCchh----hHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIFE--ISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~~--l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+.... ..+.+.+ +..++..+ .+......++ ++.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 233332110 1122221 11122211 1122234455 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+..++.+|+|+|||||++|.|+.....+ +.++..+. + ++++|++||+.+.+..+++ ++.+++.|.++..|.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKI-EELILKLK-E-KYTIVIVTHNMQQAARVSD--QTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHh-c-CCEEEEEEcCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 77888888999999999999999988765544 46666664 3 6899999999999988888 888999888877653
No 207
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.8e-15 Score=187.20 Aligned_cols=157 Identities=12% Similarity=0.144 Sum_probs=113.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-hhc----------------------Cccccccc---cc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-AQV----------------------GADVPAEI---FE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~----------------------G~~vPa~~---~~ 1066 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... ... -.|||+.. ..
T Consensus 18 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKV-RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46899999999 78999999999999999999999986532 011 12444332 11
Q ss_pred cchHHH------------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1067 ISPVDR------------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1067 l~~~d~------------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+++.+. ++.++|..+......+++| ++.++++.+.+++.+|+++|||||++|.|+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 222222 2233333333333445666 455667888888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+ ..++..+.++ +.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 177 ~~~~~l-~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 225 (506)
T PRK13549 177 SETAVL-LDIIRDLKAH-GIACIYISHKLNEVKAISD--TICVIRDGRHIGTR 225 (506)
T ss_pred HHHHHH-HHHHHHHHHC-CCEEEEEeCcHHHHHHhcC--EEEEEECCEEeeec
Confidence 865554 4667777554 8899999999999998888 89999998887654
No 208
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.61 E-value=3.3e-15 Score=168.25 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=114.7
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHhhcC-------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVG------------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ilaq~G------------- 1057 (1288)
+.|.+++...-+ .+..++++++|++ .+|++++|+||||+|||||||+|+|+. +-...|
T Consensus 6 ~~l~~~~l~~~~-------~~~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 6 PILEIKNLHASV-------NENEILKGLNLSI-NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77 (252)
T ss_pred ceEEEEeEEEEe-------CCEEeeecceeEE-cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC
Confidence 346666554322 1236899999999 789999999999999999999999962 111122
Q ss_pred ---------ccccccccc---cchH----------------------------HHHHHhcCchh-hHhhccc-chH-HHH
Q 000778 1058 ---------ADVPAEIFE---ISPV----------------------------DRIFVRMGAKD-HIMAGQS-TFL-TEL 1094 (1288)
Q Consensus 1058 ---------~~vPa~~~~---l~~~----------------------------d~i~~~ig~~d-~i~~~~S-tf~-~e~ 1094 (1288)
.++|+.... +... ..++..+|..+ .+..... .++ ++.
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 122222100 0111 11222333321 1222222 366 455
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh-cCCCceEEeeeEEEEec
Q 000778 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY-KKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1095 ~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~-~~~~~v~~~~~~~~~~~ 1173 (1288)
++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++ +.++|++||+++++... ++ ++.+++.|.++..
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-g~tii~~tH~~~~~~~~~~d--~i~~l~~G~i~~~ 233 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTS-ENSIILITHYQRLLDYIKPD--YVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHHhhhCC--EEEEEeCCEEEEe
Confidence 6777888889999999999998888888666554 566666553 78999999999998775 66 8888888988776
Q ss_pred CC
Q 000778 1174 GV 1175 (1288)
Q Consensus 1174 g~ 1175 (1288)
++
T Consensus 234 ~~ 235 (252)
T CHL00131 234 GD 235 (252)
T ss_pred cC
Confidence 54
No 209
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.61 E-value=3.1e-15 Score=170.26 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=109.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------------------q~G~~vPa~~ 1064 (1288)
..++.+++|.+ .+|++++|+||||+|||||||+|+|+.-.. ....|+|+..
T Consensus 14 ~~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 14 RAILRDLSLRI-EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred EeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 46788999999 789999999999999999999999864221 1123444432
Q ss_pred ---cccchHHHH-------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhC---------CC
Q 000778 1065 ---FEISPVDRI-------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSA---------TR 1106 (1288)
Q Consensus 1065 ---~~l~~~d~i-------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a---------~~ 1106 (1288)
..+.+.+.+ +..+|....+....++++ ++.++++.+..++ .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 112333332 122233222233345566 4555667777777 59
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+++|||||++|.|+.....+. .++..+.++.+.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~~~d--~i~~l~~G~i~~~g 237 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAARHAD--RIAMLADGAIVAHG 237 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC--EEEEEECCeEEEec
Confidence 9999999998888888666544 56666655447899999999999988888 88888888776544
No 210
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.61 E-value=2.2e-15 Score=181.11 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc--------cc---ccccccchHH----------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--------VP---AEIFEISPVD---------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~--------vP---a~~~~l~~~d---------- 1071 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... ..|.. ++ .....+++.+
T Consensus 37 ~~IL~nVSfsI-~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~ 114 (549)
T PRK13545 37 HYALNNISFEV-PEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMG 114 (549)
T ss_pred ceEEeeeEEEE-eCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcC
Confidence 46899999999 78999999999999999999999996421 22210 00 0001112222
Q ss_pred -----------HHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000778 1072 -----------RIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV 1139 (1288)
Q Consensus 1072 -----------~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~ 1139 (1288)
.++..++..+.+......+++ +.++++.+++++.+|++||||||++|.|+.....+. .+|..+.++
T Consensus 115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~- 192 (549)
T PRK13545 115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQ- 192 (549)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhC-
Confidence 233445555555555667774 555677888889999999999998888887655544 556666544
Q ss_pred CcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1140 QCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1140 ~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 193 G~TIIIVSHdl~~i~~l~D--rIivL~~GkIv~~G 225 (549)
T PRK13545 193 GKTIFFISHSLSQVKSFCT--KALWLHYGQVKEYG 225 (549)
T ss_pred CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 8899999999999988888 88888888877655
No 211
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.61 E-value=2.9e-15 Score=168.05 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=98.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH--------hhcCcccccccc---ccchHH-----------------HHHHh
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL--------AQVGADVPAEIF---EISPVD-----------------RIFVR 1076 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------aq~G~~vPa~~~---~l~~~d-----------------~i~~~ 1076 (1288)
.+|++++|+||||+|||||||+|+|+... .+.-.|+|+... ..++.+ .++..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 46899999999999999999999986421 111134454321 112222 23344
Q ss_pred cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1077 MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1077 ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
++..+.+....+.++ +|.++++.+.+++.+|+++|||||++|.|+.....+. .++.++.++.++++|++||+++++..
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 555544445556677 5666788888899999999999998888887665544 56666665557899999999999998
Q ss_pred hcCCCceEEee
Q 000778 1156 YKKDPRVSLCH 1166 (1288)
Q Consensus 1156 ~~~~~~v~~~~ 1166 (1288)
+++ +|.+++
T Consensus 182 ~~d--~i~~l~ 190 (246)
T cd03237 182 LAD--RLIVFE 190 (246)
T ss_pred hCC--EEEEEc
Confidence 888 665553
No 212
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=2.5e-15 Score=185.69 Aligned_cols=157 Identities=10% Similarity=0.088 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc---cccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI---FEIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~---~~l~ 1068 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+.. ..++
T Consensus 17 ~~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 17 VKALSGAALNV-YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred eEEeeeeeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 46889999999 78999999999999999999999986411 01112444432 1112
Q ss_pred hHHH-------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1069 PVDR-------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1069 ~~d~-------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+.+. ++.++|..+......+++|+ +.++++.+.+++.+|+|||||||++|.|+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 2222 23333443333334456664 555677777889999999999998888887
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
....+ +.++..+.+. +.++|++||+.+++..+++ +|.+++.|.++..+
T Consensus 176 ~~~~l-~~~l~~l~~~-~~tvii~sHd~~~~~~~~d--~i~~l~~G~i~~~~ 223 (501)
T PRK10762 176 ETESL-FRVIRELKSQ-GRGIVYISHRLKEIFEICD--DVTVFRDGQFIAER 223 (501)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEeCCEEEEec
Confidence 65544 4667777654 8899999999999999998 89999988887554
No 213
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=169.27 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=109.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+... ...| .|+|+...
T Consensus 32 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 32 KQALFDVDLDI-PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 46899999999 78999999999999999999999987531 1112 23343321
Q ss_pred c--cchHHHH-----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 E--ISPVDRI-----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ~--l~~~d~i-----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
. .++.+.+ +..+|..+ .+.....+++ ++.++++.+.+++.+|++||||||
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 1222222 12222211 1122334555 566678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..+|..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 191 t~~LD~~~~~~l-~~~L~~l~~--~~tiiivtH~~~~~~~~~d--~v~~l~~G~i~~~g 244 (267)
T PRK14235 191 CSALDPIATAKV-EELIDELRQ--NYTIVIVTHSMQQAARVSQ--RTAFFHLGNLVEVG 244 (267)
T ss_pred CcCCCHHHHHHH-HHHHHHHhc--CCeEEEEEcCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 999888865544 466666643 5799999999999988888 88888888877655
No 214
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.61 E-value=3.7e-15 Score=165.19 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--hhcC------------------cccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--AQVG------------------ADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--aq~G------------------~~vPa~~~---~l~~ 1069 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+... ...| .++|+... .+++
T Consensus 20 ~~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 20 ARILNDVSLHV-ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred cccccCceEEE-cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 46889999998 78999999999999999999999987540 1111 24444321 1233
Q ss_pred HHHHH-------------------------HhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1070 VDRIF-------------------------VRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1070 ~d~i~-------------------------~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+. ..++..+........++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 33221 11111111112234455 56667888888899999999999999999876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCc-hhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYH-RLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~-~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+ ..++..+.+. +.++|++||+. +.+..+++ ++.+++.|.++..
T Consensus 179 ~~~~-~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d--~i~~l~~G~i~~~ 225 (226)
T cd03234 179 ALNL-VSTLSQLARR-NRIVILTIHQPRSDLFRLFD--RILLLSSGEIVYS 225 (226)
T ss_pred HHHH-HHHHHHHHHC-CCEEEEEecCCCHHHHHhCC--EEEEEeCCEEEec
Confidence 5544 4566666554 78999999998 57778888 8888888877653
No 215
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.61 E-value=1.9e-15 Score=166.04 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=101.9
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-------ccc-----ccccchHHHHH--Hh----
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-------PAE-----IFEISPVDRIF--VR---- 1076 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-------Pa~-----~~~l~~~d~i~--~~---- 1076 (1288)
+.+|++|.+ .+|++++|+||||||||||||+|+|+.. ...|... +.. ...+++.+.+. ..
T Consensus 2 vl~~vs~~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 2 VLDKTDFVM-GYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred eeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 678999999 7899999999999999999999998652 2223211 100 01122222221 11
Q ss_pred ------------cCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1077 ------------MGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1077 ------------ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
++..+......+.++ ++.++++.+++++.+|+++|||||+.+.++.....+...+.+.+ + +.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~--~~~i 156 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-Q--QKGL 156 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-h--CCcE
Confidence 111111122234455 44556778888899999999999988887776555443444443 2 3568
Q ss_pred EEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1144 l~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++||+++.+..+++ ++.+++.|.++..+
T Consensus 157 i~vsH~~~~~~~~~d--~i~~l~~G~i~~~~ 185 (213)
T PRK15177 157 IVLTHNPRLIKEHCH--AFGVLLHGKITMCE 185 (213)
T ss_pred EEEECCHHHHHHhcC--eeEEEECCeEEEeC
Confidence 999999999988888 88888888776544
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=169.85 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+||||||++|+|+.-. . ..| .|+|+...
T Consensus 33 ~~~l~~vs~~i-~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 33 FLALVDVHLKI-PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred eEEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 46899999999 78999999999999999999999986421 0 111 24444321
Q ss_pred c--cchHHHHH--------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRIF--------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i~--------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. ..+.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+|||||||++|
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 1 12223221 111111 11122334455 566778888889999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee---------eEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH---------MACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~---------~~~~~~~g 1174 (1288)
.|+.....+. .+|..+. + ++++|++||+.+.+..+++ ++.+++ .|.++..|
T Consensus 192 LD~~~~~~l~-~~L~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 192 LDPISTRQVE-ELCLELK-E-QYTIIMVTHNMQQASRVAD--WTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred CCHHHHHHHH-HHHHHHh-c-CCEEEEEeCCHHHHHHhCC--EEEEEecccccccccCceEEEeC
Confidence 8887655443 5666664 3 5899999999999999888 888886 67766654
No 217
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.61 E-value=2.2e-15 Score=186.52 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=111.2
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc------ccc
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI------FEI 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~------~~l 1067 (1288)
+.++++|.+ .+|++++|+||||||||||||+|+|+.-. ...-.|+|+.. ..+
T Consensus 278 ~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEV-RAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 578999999 78999999999999999999999986310 01123555431 011
Q ss_pred chHH------------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1068 SPVD------------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1068 ~~~d------------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
++.+ .++.++|.. +......+.+| ++.++++.+.+++.+|+|||||||++|.|+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 2222 223334443 33344455666 455667777888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.....+. .++..+.++ |+++|++|||++++..+++ ++.+++.|.++..+
T Consensus 437 ~~~~~l~-~~l~~l~~~-g~tiIivsHd~~~i~~~~d--~i~~l~~G~i~~~~ 485 (510)
T PRK15439 437 SARNDIY-QLIRSIAAQ-NVAVLFISSDLEEIEQMAD--RVLVMHQGEISGAL 485 (510)
T ss_pred hHHHHHH-HHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEE
Confidence 8666554 566777664 8899999999999999998 88888888776544
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.9e-15 Score=166.84 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-Hh---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LA---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-la---q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.. .. ..| .|+|+...
T Consensus 18 ~~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 18 KKALNSVSLDF-YPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 46889999999 7899999999999999999999998631 11 012 23443321
Q ss_pred --ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. .+++.. +.+......++ ++.++++.+.+++.+|+|+|||||+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 122333321 011110 11122234455 5566778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d--~i~~l~~G~i~~~g 229 (252)
T PRK14239 177 SALDPISAGKI-EETLLGLKD--DYTMLLVTRSMQQASRISD--RTGFFLDGDLIEYN 229 (252)
T ss_pred cccCHHHHHHH-HHHHHHHhh--CCeEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 88888866554 466666643 5799999999999888888 89999988877655
No 219
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.3e-15 Score=167.73 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--Hhhc---------------------Cccccccccc--c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--LAQV---------------------GADVPAEIFE--I 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--laq~---------------------G~~vPa~~~~--l 1067 (1288)
..+++|++|.+ .+|++++|+||||+|||||||+|+|+.- .... -.|+|+.... .
T Consensus 15 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 15 KQALFDINMQI-EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred EeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 46789999999 7899999999999999999999998631 0111 1344443211 1
Q ss_pred chHHHH-----------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1068 SPVDRI-----------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1068 ~~~d~i-----------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.+.+.+ +..++.. +.+......++ ++.++++.+.+++.+|+++|||||++|.
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 222222 2233331 11222334455 5666788888889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+.....+ ..++..+. + ++++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 174 D~~~~~~l-~~~l~~~~-~-~~tiii~tH~~~~~~~~~d--~i~~l~~G~i~~~g 223 (246)
T PRK14269 174 DPISSGVI-EELLKELS-H-NLSMIMVTHNMQQGKRVAD--YTAFFHLGELIEFG 223 (246)
T ss_pred CHHHHHHH-HHHHHHHh-C-CCEEEEEecCHHHHHhhCc--EEEEEECCEEEEEC
Confidence 88755444 45666664 3 7899999999999988888 88899988887654
No 220
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=5.1e-15 Score=167.57 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=115.1
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G---------- 1057 (1288)
..|.+++..+-+- +..+++|++|++ .+|++++|+||||+|||||||+|+|+.-. ...|
T Consensus 12 ~~l~~~~l~~~~~-------~~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 12 SKIQVRNLNFYYG-------KFHALKNINLDI-AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred ceEEEEEEEEEeC-------CeEEeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3466666654321 235889999999 78999999999999999999999987420 1112
Q ss_pred -------------cccccccc--ccchHHHH----------------------HHhcCch----hhHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIF--EISPVDRI----------------------FVRMGAK----DHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~--~l~~~d~i----------------------~~~ig~~----d~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+... ..++.+.+ +..++.. +.+.....+++ ++.+
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred ccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23443321 11222222 1122211 11222334455 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++.+.+++.+|+++|||||++|.|+.....+ ..++..+. . +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 237 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELK-Q-DYTVVIVTHNMQQAARCSD--YTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 78888888999999999999888888755544 45666664 3 6799999999999988888 88899888887655
No 221
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.60 E-value=3.5e-15 Score=162.83 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=97.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+...|+++...
T Consensus 11 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTI-EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 35788999998 78999999999999999999999985411 011223333211
Q ss_pred ccchHH---------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVD---------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d---------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
..++.+ .++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 112222 22333444333334445555 56667788888899999999999988888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
...+ ..++..+.+. +.++|++||+.++.. .++
T Consensus 170 ~~~l-~~~l~~~~~~-~~tii~~sh~~~~~~-~~d 201 (206)
T TIGR03608 170 RDEV-LDLLLELNDE-GKTIIIVTHDPEVAK-QAD 201 (206)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEEeCCHHHHh-hcC
Confidence 5544 4666666554 789999999998764 455
No 222
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.60 E-value=3.1e-15 Score=185.76 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=111.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-HhhcC----------------------------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVG---------------------------------- 1057 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-laq~G---------------------------------- 1057 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+.. ....|
T Consensus 13 ~~~l~~is~~i-~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 13 KEVLKNISFTI-EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred eEeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 35789999999 7899999999999999999999999741 11111
Q ss_pred --------------------cccccc-c---cccchHHH---------------------HHHhcCchhhHhhcccchHH
Q 000778 1058 --------------------ADVPAE-I---FEISPVDR---------------------IFVRMGAKDHIMAGQSTFLT 1092 (1288)
Q Consensus 1058 --------------------~~vPa~-~---~~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~~ 1092 (1288)
.++|+. . ..+.+.+. ++..+|..+.+....+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 233332 1 11122222 23334443333444566774
Q ss_pred -HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1093 -ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1093 -e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
|.++++.+.+++.+|++||||||++|.|+.....+. .+++.+.++.|.++|++||+.+++..+++ +|..++.|.++
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d--~i~~l~~G~i~ 248 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTSHWPEVIEDLSD--KAIWLENGEIK 248 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcC--EEEEEeCCEEe
Confidence 555677778889999999999998888887655443 66777765558899999999999988888 88888888776
Q ss_pred ecC
Q 000778 1172 GNG 1174 (1288)
Q Consensus 1172 ~~g 1174 (1288)
..|
T Consensus 249 ~~g 251 (520)
T TIGR03269 249 EEG 251 (520)
T ss_pred eec
Confidence 443
No 223
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=3.7e-15 Score=170.29 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=111.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc----cccch
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI----FEISP 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~----~~l~~ 1069 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+|+... .+...|+|+.. ....+
T Consensus 21 ~~l~~v~l~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 21 NQLNGVSFSI-TKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 4889999999 78999999999999999999999985411 11123455442 11233
Q ss_pred HHHH---------------------HHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDRI---------------------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~i---------------------~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+.+ +..+|..+........+++ +.++++.+.+++.+|+++|||||++|.|+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 3333 2222333333333445564 45567777788999999999999999998876655
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
. .++..+.++.|.++|++||+++.+. .++ ++.+++.|.++..+.
T Consensus 180 ~-~~l~~l~~~~g~tiil~sH~~~~~~-~~d--~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 180 M-RVIHEIKEKYQLTVLSITHDLDEAA-SSD--RILVMKAGEIIKEAA 223 (277)
T ss_pred H-HHHHHHHHhcCCEEEEEeCCHHHHH-hCC--EEEEEECCEEEEeCC
Confidence 4 5666776555899999999999986 466 899999998876653
No 224
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=4e-15 Score=160.76 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=118.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---------------HhhcCccccccccc---------c-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------LAQVGADVPAEIFE---------I- 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---------------laq~G~~vPa~~~~---------l- 1067 (1288)
..+++||+|++ .+|+.++|+|+||||||||||.|+|+.. ++-.+.|-|....+ +
T Consensus 40 ~~aL~disf~i-~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDISFEI-YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCceEEE-eCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 47899999999 8999999999999999999999999652 22222344433211 0
Q ss_pred -------chHHHHHHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH--HHHHHHHHHh
Q 000778 1068 -------SPVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI--AESVLEHFVH 1137 (1288)
Q Consensus 1068 -------~~~d~i~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai--a~aile~l~~ 1137 (1288)
..++.|...-.+.+.+..+..+++..|. +++..++...+|+++||||. ++..|..-. +...++.+.+
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv---lavGD~~F~~K~~~rl~e~~~ 195 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV---LAVGDAAFQEKCLERLNELVE 195 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh---hhcCCHHHHHHHHHHHHHHHH
Confidence 0133444444456788888999998886 68888888999999999999 666664322 3355666655
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+ +.++|+|||+++.+..+|+ ++.+++.|.+...|+
T Consensus 196 ~-~~tiv~VSHd~~~I~~~Cd--~~i~l~~G~i~~~G~ 230 (249)
T COG1134 196 K-NKTIVLVSHDLGAIKQYCD--RAIWLEHGQIRMEGS 230 (249)
T ss_pred c-CCEEEEEECCHHHHHHhcC--eeEEEeCCEEEEcCC
Confidence 4 6899999999999999999 999999999888764
No 225
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=6.2e-15 Score=166.02 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=108.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||+|+|+|+.- . ...| .|+|+...
T Consensus 18 ~~~l~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 18 KQILFDINLDI-YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 46789999999 7899999999999999999999998742 0 0111 24444321
Q ss_pred cc--chHHHH-----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 EI--SPVDRI-----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ~l--~~~d~i-----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.+ .+.+.+ +..+|..+ .+......++ ++.++++.+.+++.+|+++|||||
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11 222222 12222211 1112223444 566678888888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..+|..+. + ++++|++||+.+++..+++ ++.+++.|.++..+
T Consensus 177 t~~LD~~~~~~l-~~~l~~~~-~-~~tiiiisH~~~~~~~~~d--~i~~l~~G~i~~~~ 230 (251)
T PRK14244 177 CSALDPVATNVI-ENLIQELK-K-NFTIIVVTHSMKQAKKVSD--RVAFFQSGRIVEYN 230 (251)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHhhcC--EEEEEECCEEEEeC
Confidence 999888755544 46666663 3 7899999999999988888 89999988877654
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.60 E-value=6.6e-15 Score=162.51 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=107.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~l--~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+...-+ .+.
T Consensus 17 ~~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 17 PPVLKNISFSI-KPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred cccccceEEEE-CCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 36899999999 78999999999999999999999985311 11113444432111 111
Q ss_pred H--------------HHHHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 D--------------RIFVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d--------------~i~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+ ..+.+++..+.+. .....++ ++.++++.+.+++.+|+|+|||||++|.|+...
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 1 1223344444332 2345555 566677888888999999999999999888765
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ +.++..+. . +.++|++||+.+.+.. ++ ++..++.|.++..+
T Consensus 176 ~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d--~i~~l~~g~~~~~~ 219 (221)
T cd03244 176 ALI-QKTIREAF-K-DCTVLTIAHRLDTIID-SD--RILVLDKGRVVEFD 219 (221)
T ss_pred HHH-HHHHHHhc-C-CCEEEEEeCCHHHHhh-CC--EEEEEECCeEEecC
Confidence 544 45666653 3 5799999999998865 65 88888888776543
No 227
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.2e-15 Score=167.13 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=114.6
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-H---hhcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-L---AQVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-l---aq~G---------- 1057 (1288)
+.|.+++...-+ .+..+.++++|++ .+|++++|+||||+|||||||+|+|+.. . ...|
T Consensus 20 ~~l~~~~l~~~~-------~~~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 20 HILEVKDLSIYY-------GEKRAVNDISMDI-EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred ceEEEEEEEEEe-------CCceeeeceEEEE-cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 456666654322 1246899999999 7899999999999999999999998631 1 1111
Q ss_pred -------------ccccccccc--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIFE--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+.... ..+.+.+. ..++.. +.+......++ ++.+
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 234433211 12222221 111110 11122334455 4556
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+++.+.+++.+|+++|||||++|.|+.....+ ..++..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d--~v~~l~~G~i~~~~ 245 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKE--EYSIIIVTHNMQQALRVSD--RTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHH-HHHHHHHhc--CCEEEEEEeCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 67788888999999999999888888866654 466666643 5799999999999888888 88899888877655
No 228
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.4e-15 Score=169.49 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=107.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-. ...| .|+|+...
T Consensus 52 ~~il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 52 EQALDDVSMDI-PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred EeeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 46899999999 78999999999999999999999986421 1111 23443321
Q ss_pred c--cchHHHH--------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRI--------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i--------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. ..+.+.+ +..++.. +.+......++ ++.++++.+.+++.+|+|||||||++|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 1 1222222 1222221 12233345566 456677888888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceE-EeeeEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVS-LCHMACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~-~~~~~~~~~~g 1174 (1288)
.|+.....+ ..++..+.+ +.++|++||+++++..+++ ++. +++.|.++..+
T Consensus 211 LD~~~~~~l-~~~L~~~~~--~~tiii~tH~~~~i~~~~d--ri~v~l~~G~i~~~g 262 (285)
T PRK14254 211 LDPVATSKI-EDLIEELAE--EYTVVIVTHNMQQAARISD--KTAVFLTGGELVEFD 262 (285)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHhhcC--EEEEEeeCCEEEEeC
Confidence 988755544 466666754 3799999999999988887 654 55777766544
No 229
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=5e-15 Score=161.34 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=103.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--hhcCcc------ccc---c-ccccchH---HHHHHh
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--AQVGAD------VPA---E-IFEISPV---DRIFVR 1076 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--aq~G~~------vPa---~-~~~l~~~---d~i~~~ 1076 (1288)
+..+..+++|.+ .+|++++|+||||+||||||++|+|+.-. ...|.. +.. . ...++++ ..++..
T Consensus 19 ~~~il~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 19 KIPILKDFSGVV-KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CceeeeeEEEEE-CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 346889999999 78999999999999999999999997541 222311 100 0 0011111 112222
Q ss_pred cCchhhHh--------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEE-
Q 000778 1077 MGAKDHIM--------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFS- 1146 (1288)
Q Consensus 1077 ig~~d~i~--------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~- 1146 (1288)
+.+.+++. .....++ +|.++++.+.+++.+|+++|||||++|.|+.....+ +.++.++.++.+.++|++
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 98 LTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred CcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhCCCEEEEEE
Confidence 33333332 2234455 566778888889999999999999999888765544 466777765445666665
Q ss_pred cCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1147 THYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1147 TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
+|+.+.+..+++ ++.+++.|.++.
T Consensus 177 ~h~~~~~~~~~d--~i~~l~~G~i~~ 200 (202)
T cd03233 177 YQASDEIYDLFD--KVLVLYEGRQIY 200 (202)
T ss_pred cCCHHHHHHhCC--eEEEEECCEEEe
Confidence 555677777887 888888887654
No 230
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.59 E-value=2.6e-15 Score=159.61 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchH-H
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-T 1092 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~ 1092 (1288)
.+.+++ |.+ .+|++++|+||||+|||||||+|+|+.. ...|...-.. ..+++..+ ... ++ +
T Consensus 14 ~~l~~~-~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g-~~i~~~~q---------~~~-----LSgG 75 (177)
T cd03222 14 FLLVEL-GVV-KEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDG-ITPVYKPQ---------YID-----LSGG 75 (177)
T ss_pred EEEccC-cEE-CCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECC-EEEEEEcc---------cCC-----CCHH
Confidence 344553 666 6799999999999999999999998543 2223221110 01111110 000 44 4
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++.+.++|++||+++.+..+++ ++.+++.
T Consensus 76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d--~i~~l~~ 147 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVVEHDLAVLDYLSD--RIHVFEG 147 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEECCHHHHHHhCC--EEEEEcC
Confidence 556777788889999999999998888888666554 45555555434899999999999988887 6665553
No 231
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=4e-15 Score=150.52 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=106.9
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc-----
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF----- 1065 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~----- 1065 (1288)
.+..++|+++|.+ .+|++++||||+|||||||||++|.+.- ..|-.+|+-+..+
T Consensus 14 ~~a~il~~isl~v-~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 14 GDAKILNNISLSV-RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred CCCeeecceeeee-cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 4578999999999 8999999999999999999999997541 1122222211111
Q ss_pred -----ccc-----------hHHHHHHhcCchhhHhhcc-cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1066 -----EIS-----------PVDRIFVRMGAKDHIMAGQ-STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1066 -----~l~-----------~~d~i~~~ig~~d~i~~~~-Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.++ .+-.++.|++..+.+.... ..++ +|.++++.+..+..-|.+|||||+++..|+.....|
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 111 1223566777766665432 2333 788899999999999999999999666666656655
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
- +++.++....+..++.+||+.+.+...++ ++..+..|
T Consensus 173 e-~mi~~~v~~q~vAv~WiTHd~dqa~rha~--k~itl~~G 210 (223)
T COG4619 173 E-EMIHRYVREQNVAVLWITHDKDQAIRHAD--KVITLQPG 210 (223)
T ss_pred H-HHHHHHhhhhceEEEEEecChHHHhhhhh--eEEEeccC
Confidence 4 45555554457899999999999777666 44444443
No 232
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.59 E-value=5.1e-15 Score=165.26 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=105.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+... .+.-.|+|+... ...+.
T Consensus 16 ~~~l~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTI-PPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEe-cCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 35789999998 78999999999999999999999986411 111234444321 11222
Q ss_pred HHHH---------------HhcCchhhH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRIF---------------VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i~---------------~~ig~~d~i-----------~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+. ...+..+.+ ......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 2211 011111111 11123455 45566777778899999999999999988886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ +.++..+. + ++++|++||+++++. .++ ++..++.|.++..+
T Consensus 175 ~~~l-~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d--~v~~l~~G~i~~~~ 219 (238)
T cd03249 175 EKLV-QEALDRAM-K-GRTTIVIAHRLSTIR-NAD--LIAVLQNGQVVEQG 219 (238)
T ss_pred HHHH-HHHHHHhc-C-CCEEEEEeCCHHHHh-hCC--EEEEEECCEEEEeC
Confidence 6544 45666664 3 789999999999986 677 88888888876554
No 233
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.59 E-value=6.2e-15 Score=165.61 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=103.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-HHhhcC----------------------ccccccccccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVG----------------------ADVPAEIFEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-ilaq~G----------------------~~vPa~~~~l~~ 1069 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+. +....| .|+++.....+.
T Consensus 14 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 14 KAILRGLNLEV-RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 35789999998 789999999999999999999999973 112222 122322110000
Q ss_pred ----------HH---------------------HHHHhcCchhh-Hhhcc-cchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1070 ----------VD---------------------RIFVRMGAKDH-IMAGQ-STFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1070 ----------~d---------------------~i~~~ig~~d~-i~~~~-Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.. .++..++..+. ..... ..++ ++.++++.+.+++.+|+++|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00 00111111000 00111 2466 455667788888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhh-cCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDY-KKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~-~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..++.++.+ .++|+|++||+++++... ++ ++.+++.|.++..|
T Consensus 173 t~~LD~~~~~~l-~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d--~i~~l~~g~i~~~g 228 (248)
T PRK09580 173 DSGLDIDALKIV-ADGVNSLRD-GKRSFIIVTHYQRILDYIKPD--YVHVLYQGRIVKSG 228 (248)
T ss_pred CccCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHhhhCC--EEEEEECCeEEEeC
Confidence 888888765544 356666754 378999999999998876 66 78888888776554
No 234
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=7.2e-15 Score=165.67 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~ 1065 (1288)
..+++|++|.+ .+|++++|+||||+||||||++|+|+.-.. ..| .|+|+...
T Consensus 17 ~~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 17 NHVIKGVDLKI-PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 46899999999 789999999999999999999999874221 112 23333321
Q ss_pred ---ccchHHHHH-----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1066 ---EISPVDRIF-----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1066 ---~l~~~d~i~-----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
.+++.+.+. ..++.. ..+......++ ++.++++.+.+++.+|+++||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 122233221 111111 01111223344 56667888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 176 P~~~LD~~~~~~l-~~~l~~~~~--~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 230 (253)
T PRK14267 176 PTANIDPVGTAKI-EELLFELKK--EYTIVLVTHSPAQAARVSD--YVAFLYLGKLIEVG 230 (253)
T ss_pred CCccCCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 9999988755544 456666643 5899999999999988888 88888888877654
No 235
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=2.7e-15 Score=155.29 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=111.1
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCcc----ccccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGAD----VPAEIFE 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~----vPa~~~~ 1066 (1288)
+-..+|+++|.+ ..|++-+|+||||+||||+|-.|.|-+ -.|++|.- .|.-.-.
T Consensus 17 GF~Aln~ls~~v-~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 17 GFKALNDLSFSV-DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred ceeeeeeeEEEe-cCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 346789999999 789999999999999999999999843 23444421 0110011
Q ss_pred cc--------------h---------------HHHHHHhcCchhhHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCC
Q 000778 1067 IS--------------P---------------VDRIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~--------------~---------------~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~i-l~~a~~~sLvLLDEpg 1116 (1288)
++ + +|.++..+|..+......++++-..++.-.| +-++.+|.|||||||.
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPv 175 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCcc
Confidence 11 1 2223333444333333334444222222222 2257999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
+|..-.+....+ .++..|+. ++.+|++.||++++..+++ +|.++|.|.+..+|+.
T Consensus 176 AGMTd~Et~~ta-eLl~~la~--~hsilVVEHDM~Fvr~~A~--~VTVlh~G~VL~EGsl 230 (249)
T COG4674 176 AGMTDAETEKTA-ELLKSLAG--KHSILVVEHDMGFVREIAD--KVTVLHEGSVLAEGSL 230 (249)
T ss_pred CCCcHHHHHHHH-HHHHHHhc--CceEEEEeccHHHHHHhhh--eeEEEeccceeecccH
Confidence 999998887766 67777854 6899999999999999998 9999999999998864
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.59 E-value=6e-15 Score=162.82 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=105.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCcccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~~---~ 1066 (1288)
..+.++++|.+ .+|++++|+||||+|||||+++|+|+.-. .+...|+|.... .
T Consensus 18 ~~il~~vs~~i-~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEI-NPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 46889999998 78999999999999999999999985310 111234443321 1
Q ss_pred cchH----------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1067 ISPV----------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1067 l~~~----------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.++. ..++.++|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 1221 222334444444444445565 45566777888899999999999988888875
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
...+ ..+++.+.+..++++|++||++++. .+++ +|..++.|.
T Consensus 177 ~~~l-~~~l~~~~~~~~~tii~~sh~~~~~-~~~d--~v~~l~~g~ 218 (220)
T TIGR02982 177 GRDV-VELMQKLAREQGCTILIVTHDNRIL-DVAD--RIVHMEDGK 218 (220)
T ss_pred HHHH-HHHHHHHHHHcCCEEEEEeCCHHHH-hhCC--EEEEEECCE
Confidence 5544 4667767654589999999999864 5677 777776654
No 237
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.59 E-value=4.6e-15 Score=184.59 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=114.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccc-----c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEI-----F 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~-----~ 1065 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.. +.+.-.|+|+.. .
T Consensus 299 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTL-RPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 46899999999 7899999999999999999999998641 001113455442 0
Q ss_pred ccchHHH-----------------------HHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1066 EISPVDR-----------------------IFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1066 ~l~~~d~-----------------------i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+.+.+. ++..+|.. +.......++|+ +.++++.+.+++.+|+++|||||++|.|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 1122222 23334443 233444566664 5556777788899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.....+. .++..+.++.++++|++||+++++..+++ ++.+++.|.++..+.
T Consensus 458 ~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d--~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 458 KTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCH--QVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcC--eEEEEECCEEEEEcC
Confidence 88665544 66666765558899999999999999888 899999998876653
No 238
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.59 E-value=4.6e-15 Score=161.79 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=101.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------cccccccc--ccchHHHHH---------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEIF--EISPVDRIF--------- 1074 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa~~~--~l~~~d~i~--------- 1074 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.- ...| .|+|+... ..++.+.+.
T Consensus 19 ~il~~~s~~i-~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 19 FTLKDINLEV-PKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred ceeeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 5788999999 7899999999999999999999999642 2222 34554421 122222221
Q ss_pred -----HhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1075 -----VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1075 -----~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
..++..+.+. .....++ ++.++++.+.+++.+|+++|||||++|.|+.....+...++..+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~ 176 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL 176 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc
Confidence 1122222221 1124455 5666788888889999999999998888887555554445555544
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
. +.++|++||+++.+.. ++ ++..++.|
T Consensus 177 ~-~~tvi~~sh~~~~~~~-~d--~i~~l~~G 203 (204)
T cd03250 177 N-NKTRILVTHQLQLLPH-AD--QIVVLDNG 203 (204)
T ss_pred C-CCEEEEEeCCHHHHhh-CC--EEEEEeCC
Confidence 4 7899999999998876 66 66665543
No 239
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.59 E-value=6.4e-15 Score=164.38 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=106.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++.
T Consensus 15 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRI-KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 46789999999 78999999999999999999999986411 111234454421 11222
Q ss_pred HHHH---------------HhcCchhh-----------HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRIF---------------VRMGAKDH-----------IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i~---------------~~ig~~d~-----------i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+. ...+..+. +.....+++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 2221 11122111 112235566 45556777788899999999999999998886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. .++..+. + ++++|++||+++++. .++ ++.+++.|.++..+
T Consensus 174 ~~~l~-~~l~~~~-~-~~tiii~sH~~~~~~-~~d--~v~~l~~G~i~~~~ 218 (237)
T cd03252 174 EHAIM-RNMHDIC-A-GRTVIIIAHRLSTVK-NAD--RIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHH-HHHHHhc-C-CCEEEEEeCCHHHHH-hCC--EEEEEECCEEEEEc
Confidence 66544 5556664 3 789999999999885 466 89999998877654
No 240
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=7.2e-15 Score=165.47 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=108.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. ...| .|+|+...
T Consensus 17 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 17 KQALNDINLPI-YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 35789999999 78999999999999999999999986421 0112 23443321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. ..++.. +........++ ++.++++.+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12222221 111110 11222334455 5566778888889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.+ +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 176 ~~LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d--~v~~l~~G~i~~~~ 228 (251)
T PRK14270 176 SALDPISTLKI-EDLMVELKK--EYTIVIVTHNMQQASRVSD--YTAFFLMGDLIEFN 228 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHHh--CCeEEEEEcCHHHHHHhcC--EEEEEECCeEEEeC
Confidence 99888765554 456666644 4799999999999988888 89999999887665
No 241
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=7.7e-15 Score=165.13 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=108.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC---------------------cccccccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG---------------------ADVPAEIF-- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G---------------------~~vPa~~~-- 1065 (1288)
..++++++|++ .+|++++|+||||+||||||++|+|+.-. ...| .|+|+...
T Consensus 16 ~~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 16 VEVLDGVNLEI-PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 36889999999 78999999999999999999999986421 0112 24444321
Q ss_pred -ccchHHHHH-----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 -EISPVDRIF-----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 -~l~~~d~i~-----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..+|.. +.+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 123333331 112221 11222334555 4556778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+. + +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~g 227 (250)
T PRK14247 175 ANLDPENTAKIE-SLFLELK-K-DMTIVLVTHFPQQAARISD--YVAFLYKGQIVEWG 227 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHh-c-CCEEEEEeCCHHHHHHhcC--EEEEEECCeEEEEC
Confidence 888888655444 5566664 3 6899999999999888888 88888888776654
No 242
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.6e-15 Score=182.94 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=112.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..+.++++|++ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .++
T Consensus 11 ~~il~~vs~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKV-RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 45788999999 78999999999999999999999986411 011124554321 122
Q ss_pred hHHHH------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1069 PVDRI------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1069 ~~d~i------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+.+ +.+++..........++| ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 22222 222333322333345566 45566777778899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+ ..++..+.+. |.++|++||+.+++..+++ +|.+++.|.++..+
T Consensus 170 ~~~l-~~~l~~l~~~-g~tvii~tH~~~~~~~~~d--~i~~l~~G~i~~~~ 216 (491)
T PRK10982 170 VNHL-FTIIRKLKER-GCGIVYISHKMEEIFQLCD--EITILRDGQWIATQ 216 (491)
T ss_pred HHHH-HHHHHHHHhC-CCEEEEEecCHHHHHHhCC--EEEEEECCEEEeec
Confidence 5544 4667777554 8899999999999998888 89999988887654
No 243
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.3e-15 Score=165.67 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=106.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------ccccccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEI- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~- 1064 (1288)
..++++++|.+ .+|++++|+||||||||||||+|+|+.-.. ..| .|+++..
T Consensus 17 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 17 FHAVEDVNLNI-EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred EeeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35789999999 789999999999999999999999865210 112 2333321
Q ss_pred --cccchHHHH----------------------HHhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1065 --FEISPVDRI----------------------FVRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1065 --~~l~~~d~i----------------------~~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
..+++.+.+ +..+|.. +.+.....+++ ++.++++.+.+++.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 112223322 1112211 11222334555 566678888888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee------eEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH------MACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~------~~~~~~~g 1174 (1288)
++|.|+.....+ ..++..+. + ++++|++||+.+.+..+++ ++.++. .|.++..+
T Consensus 176 t~~LD~~~~~~l-~~~l~~~~-~-~~tviivsH~~~~~~~~~d--~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 176 CSALDPISTLAI-EDLINELK-Q-DYTIVIVTHNMQQAARVSD--QTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CCEEEEEecCHHHHHHhCC--EEEEEecccCCCCceEEecC
Confidence 888888865554 46666664 3 5799999999999988888 777775 46665544
No 244
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=4.2e-15 Score=183.88 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------------hcCccccccc------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------------------QVGADVPAEI------ 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------------------q~G~~vPa~~------ 1064 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-.. +.-.|+|+..
T Consensus 275 ~~vl~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSL-RRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEE-cCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35889999999 789999999999999999999999864210 0013445431
Q ss_pred cccchHHH--------------------------HHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1065 FEISPVDR--------------------------IFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1065 ~~l~~~d~--------------------------i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..+++.+. ++.+++.. +.......++| ++.++++.+.+++.+|.++|||||+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 11222222 23333332 22333345666 4555677777889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ +.++..+.++ |.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 434 ~~LD~~~~~~l-~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d--~v~~l~~G~i~~~~ 487 (506)
T PRK13549 434 RGIDVGAKYEI-YKLINQLVQQ-GVAIIVISSELPEVLGLSD--RVLVMHEGKLKGDL 487 (506)
T ss_pred CCcCHhHHHHH-HHHHHHHHHC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEEe
Confidence 88888855544 5677777665 8999999999999999998 88888888776554
No 245
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=5.6e-15 Score=164.48 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=106.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~d 1071 (1288)
.+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... ..++.+
T Consensus 16 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDISLDI-PAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 5788999998 78999999999999999999999986421 111234444321 112222
Q ss_pred HHH---------------HhcCchhhH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 RIF---------------VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~i~---------------~~ig~~d~i-----------~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+. ...++.+.+ ......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 174 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE 174 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 221 011111111 11123454 566778888889999999999999999988876
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ ..++..+. + +.++|++||+++++.. ++ ++.+++.|.++..+
T Consensus 175 ~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d--~v~~l~~G~i~~~~ 218 (234)
T cd03251 175 RLV-QAALERLM-K-NRTTFVIAHRLSTIEN-AD--RIVVLEDGKIVERG 218 (234)
T ss_pred HHH-HHHHHHhc-C-CCEEEEEecCHHHHhh-CC--EEEEecCCeEeeeC
Confidence 655 46666664 3 7899999999999865 76 88899888877654
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.7e-15 Score=169.43 Aligned_cols=171 Identities=15% Similarity=0.083 Sum_probs=113.6
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhc----------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQV---------- 1056 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~---------- 1056 (1288)
.+.|.+.+...-+ .+..++++++|++ .+|++++|+||||+||||||++|+|+.-. ...
T Consensus 43 ~~~l~i~nl~~~~-------~~~~iL~~is~~i-~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 43 DAKLSVEDLDVYY-------GDDHALKGVSMDI-PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred CceEEEEEEEEEe-------CCeeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 3456666654322 1246899999999 78999999999999999999999987421 111
Q ss_pred -------------Ccccccccc--ccchHHHHH----------------------------------HhcCch----hhH
Q 000778 1057 -------------GADVPAEIF--EISPVDRIF----------------------------------VRMGAK----DHI 1083 (1288)
Q Consensus 1057 -------------G~~vPa~~~--~l~~~d~i~----------------------------------~~ig~~----d~i 1083 (1288)
..|+|+... ...+.+.+. ..++.. +.+
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 124444321 012222221 111110 111
Q ss_pred hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1084 MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1084 ~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
......++ ++.++++.+.+++.+|+|||||||++|.|+.....+ ..+|..+.+ +.++|++||+++.+..+++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~i~~~~d--~i 269 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAE--EYTVVVVTHNMQQAARISD--QT 269 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHHHhcC--EE
Confidence 22234455 455677888888999999999999999988755544 466666654 4799999999999988888 75
Q ss_pred -EEeeeEEEEecC
Q 000778 1163 -SLCHMACQVGNG 1174 (1288)
Q Consensus 1163 -~~~~~~~~~~~g 1174 (1288)
.+++.|.++..+
T Consensus 270 ~~~l~~G~i~~~g 282 (305)
T PRK14264 270 AVFLTGGELVEYD 282 (305)
T ss_pred EEEecCCEEEEeC
Confidence 456788777654
No 247
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.59 E-value=4.8e-15 Score=183.18 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=111.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc------cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI------FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~------~~ 1066 (1288)
.+.++++|.+ .+|++++|+||||||||||||+|+|+.-. .+.-.|||+.. ..
T Consensus 266 ~~l~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTL-RKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEE-cCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 3688999999 78999999999999999999999985311 01123555542 11
Q ss_pred cchHH---------------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 ISPVD---------------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 l~~~d---------------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+.+.+ .++.++|.. +.......++| +|.++++.+.+++.+|+|||||||++
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 12222 223333332 22333345566 45566777788899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+.++ |.++|++||+++++..+++ +|.+++.|.++..+
T Consensus 425 ~LD~~~~~~l-~~~l~~~~~~-g~tviivtHd~~~~~~~~d--~v~~l~~G~i~~~~ 477 (501)
T PRK10762 425 GVDVGAKKEI-YQLINQFKAE-GLSIILVSSEMPEVLGMSD--RILVMHEGRISGEF 477 (501)
T ss_pred CCCHhHHHHH-HHHHHHHHHC-CCEEEEEcCCHHHHHhhCC--EEEEEECCEEEEEe
Confidence 8888866654 4667777655 8899999999999999988 88888888776544
No 248
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.59 E-value=4.9e-15 Score=161.61 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=99.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccc---cccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEI---FEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~---~~l~~ 1069 (1288)
..+.++++|.+ .+|++++|+||||+|||||+|+|+|+.-. .++ .|+|... ..+.+
T Consensus 14 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTL-NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-LYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEE-CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe-EEeCCccccCcCCcH
Confidence 35789999999 78999999999999999999999985311 111 2333221 11122
Q ss_pred H------------------HHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1070 V------------------DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1070 ~------------------d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
. +.++.++|..+......+.++ ++.++++.+.+++.+|+++|||||++|.|+.....+ +.
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 170 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL-EA 170 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HH
Confidence 2 223344455444444556666 456677888888999999999999888888866655 46
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
++..+.++ +.++|++||+.++...+..
T Consensus 171 ~l~~~~~~-~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 171 LLAQHAEQ-GGMVILTTHQDLPVASDKV 197 (204)
T ss_pred HHHHHHHC-CCEEEEEecChhhhccCCc
Confidence 66666544 7899999999998876443
No 249
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.59 E-value=2.9e-15 Score=158.16 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=94.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------ccccccccccchHHHHHHhcCchhhH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIFEISPVDRIFVRMGAKDHI 1083 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~~~l~~~d~i~~~ig~~d~i 1083 (1288)
.+.++++|++ .+|++++|+||||+|||||+|+|+|+.- ...| .|+|+... ++ .....+++
T Consensus 15 ~~l~~i~l~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i~~~~q~~~-------~~-~~tv~~nl 84 (166)
T cd03223 15 VLLKDLSFEI-KPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDLLFLPQRPY-------LP-LGTLREQL 84 (166)
T ss_pred eeeecCeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceEEEECCCCc-------cc-cccHHHHh
Confidence 5788999998 7899999999999999999999998643 2223 23443321 11 23445555
Q ss_pred hh-cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1084 MA-GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1084 ~~-~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
.. ....++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++.. .+.++|++||+.++.. .++ +
T Consensus 85 ~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~----~~~tiiivsh~~~~~~-~~d--~ 156 (166)
T cd03223 85 IYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKE----LGITVISVGHRPSLWK-FHD--R 156 (166)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH-HHHHH----hCCEEEEEeCChhHHh-hCC--E
Confidence 43 345565 5666778888889999999999998777776544332 33332 2689999999998754 566 5
Q ss_pred eEEeee
Q 000778 1162 VSLCHM 1167 (1288)
Q Consensus 1162 v~~~~~ 1167 (1288)
+..++.
T Consensus 157 i~~l~~ 162 (166)
T cd03223 157 VLDLDG 162 (166)
T ss_pred EEEEcC
Confidence 655543
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.3e-15 Score=183.57 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc---ccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~---~l~ 1068 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... .+.-.|+|+... .++
T Consensus 17 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 17 VKALDDISFDC-RAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEEEeeeeEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 45889999999 78999999999999999999999986411 011124554321 122
Q ss_pred hHHHH------------------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1069 PVDRI------------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1069 ~~d~i------------------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+.+ +..+|..+......+++| ++.++++.+..++.+|+++|||||++|.|+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 23332 223333222233345566 45566777788899999999999988888886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+ ..++..+.++ |.++|++||+++++..+++ +|.+++.|.++..
T Consensus 176 ~~~l-~~~l~~~~~~-g~tiiiitHd~~~~~~~~d--~i~~l~~G~i~~~ 221 (501)
T PRK11288 176 IEQL-FRVIRELRAE-GRVILYVSHRMEEIFALCD--AITVFKDGRYVAT 221 (501)
T ss_pred HHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEee
Confidence 5544 4566667554 8899999999999998888 8999988887654
No 251
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.4e-15 Score=167.22 Aligned_cols=156 Identities=18% Similarity=0.184 Sum_probs=108.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hc----------------------Cccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QV----------------------GADVPAEIFE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~----------------------G~~vPa~~~~ 1066 (1288)
..+.+|++|++ .+|++++|+||||+||||||++|+|+.-.. .. ..|+|+....
T Consensus 34 ~~il~~vs~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 34 KTVLDQVSMGF-PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEEeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 57899999999 789999999999999999999999864210 11 1244443211
Q ss_pred --cchHHHH----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
..+.+.+ +..++... .+......++ ++.++++.+.+++.+|.|||||||++
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~ 192 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1222222 11222211 1122234455 56667888888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|......+ ..+|..+.+ ++++|++||+++++..+++ ++.+++.|.++..+
T Consensus 193 ~LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d--ri~~l~~G~i~~~g 244 (276)
T PRK14271 193 ALDPTTTEKI-EEFIRSLAD--RLTVIIVTHNLAQAARISD--RAALFFDGRLVEEG 244 (276)
T ss_pred cCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 8888765544 456666643 4799999999999988888 89899888877654
No 252
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=165.61 Aligned_cols=149 Identities=17% Similarity=0.118 Sum_probs=101.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+++|++|++ .+|++++|+||||||||||||+|+|+.-. ...| .|+|+...
T Consensus 26 ~~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 26 FEAVKNVFCDI-PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEEcceEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 46889999999 78999999999999999999999986421 1111 24444321
Q ss_pred c--cchHHHHH--------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRIF--------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i~--------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||++|
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 1 12222221 111110 11112223455 456677888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
.|+.....+ +.++..+. + +.++|++||+++.+..+++ ++.+++.
T Consensus 185 LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d--~i~~l~~ 228 (269)
T PRK14259 185 LDPISTLKI-EETMHELK-K-NFTIVIVTHNMQQAVRVSD--MTAFFNA 228 (269)
T ss_pred CCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHHhcC--EEEEEec
Confidence 888765544 45666664 3 6899999999999999998 8888775
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=5.8e-15 Score=182.92 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=111.4
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCccccccc------ccc
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEI------FEI 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~------~~l 1067 (1288)
+.++++|.+ .+|++++|+||||||||||||+|+|+.-. .+.-.|+|+.. ..+
T Consensus 278 ~l~~isl~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 278 KVRDISFSV-CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred cccceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 789999999 78999999999999999999999986311 01113555531 011
Q ss_pred chHH------------------------------HHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1068 SPVD------------------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1068 ~~~d------------------------------~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
++.+ .++.++|.. +.......++| +|.++++.+..++.+|.|||||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 2222 233344443 33444455676 455667778888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
++|.|+.....+ ..++..+.++ |.++|++||+++++..+++ ++.+++.|.++..
T Consensus 437 t~~LD~~~~~~l-~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d--~i~~l~~G~i~~~ 490 (510)
T PRK09700 437 TRGIDVGAKAEI-YKVMRQLADD-GKVILMVSSELPEIITVCD--RIAVFCEGRLTQI 490 (510)
T ss_pred CCCcCHHHHHHH-HHHHHHHHHC-CCEEEEEcCCHHHHHhhCC--EEEEEECCEEEEE
Confidence 888888865544 4677777654 8899999999999999998 8888888876654
No 254
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.58 E-value=8.6e-15 Score=159.37 Aligned_cols=143 Identities=16% Similarity=0.092 Sum_probs=98.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+... .+.-.|+|+... ..++.
T Consensus 13 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 13 RALFSGLSFTL-AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred ceeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 46789999999 78999999999999999999999985311 111123443221 11222
Q ss_pred H---------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1071 D---------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1071 d---------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
+ .++..++...........++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 170 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAMAG 170 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 2 23344444443333445566 5566778888889999999999998888887655554 55656
Q ss_pred HHhccCcEEEEEcCCchhhhhhcC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+.++ ++++|++||+......+++
T Consensus 171 ~~~~-g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 171 HCAR-GGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred HHhC-CCEEEEEecCchhhhhccc
Confidence 6554 8899999999887666665
No 255
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=6.4e-15 Score=162.61 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=119.3
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------------------HhhcCccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------------------LAQVGADVPA 1062 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------------------laq~G~~vPa 1062 (1288)
.-.+|++|++ ..|++++|+|-+|||||||+|++..++- ..|.-..+|.
T Consensus 42 vGv~~~sl~v-~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 42 VGVNDASLDV-EEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred Eeeccceeee-cCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 4468999999 7899999999999999999999997541 1121122222
Q ss_pred cc----ccc-------------chHHHHHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1063 EI----FEI-------------SPVDRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1063 ~~----~~l-------------~~~d~i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.. ..+ ......+..+|..+.-......++++|++ +..+.+++++|+++|||||++..||+=.
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 11 000 01123455566666666666777888875 6677788999999999999999999976
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
..+-..+++ |.++.+.|++|+|||++.+..+.+ +|.+|..|.++..|++
T Consensus 201 ~~mQdeLl~-Lq~~l~KTIvFitHDLdEAlriG~--rIaimkdG~ivQ~Gtp 249 (386)
T COG4175 201 TEMQDELLE-LQAKLKKTIVFITHDLDEALRIGD--RIAIMKDGEIVQVGTP 249 (386)
T ss_pred HHHHHHHHH-HHHHhCCeEEEEecCHHHHHhccc--eEEEecCCeEEEeCCH
Confidence 665545554 666678999999999999999998 9999999999988864
No 256
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=164.20 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhc-----------------------Ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQV-----------------------GADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~-----------------------G~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+|||||||||||++|+|+.- . ... -.|+|+...
T Consensus 17 ~~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 17 NHAVKDVSMDF-PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 46899999999 7899999999999999999999998742 0 001 123444321
Q ss_pred ---ccchHHHH----------------------HHhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 ---EISPVDRI----------------------FVRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ---~l~~~d~i----------------------~~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
..++.+.+ +..++... .+......++ ++.++++.+.+++.+|++||||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 12222222 11222211 1112234455 556677778888999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++|.|+.....+ ..+++.+.+ +.++|++||+.+.+..+++ ++.+++.|.++..+.
T Consensus 176 ~~gLD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d--~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 176 ASALDPISTLKI-EELIEELKE--KYTIIIVTHNMQQAARVSD--YTAFFYMGDLVECGE 230 (252)
T ss_pred cccCCHHHHHHH-HHHHHHHHh--CCcEEEEECCHHHHHhhCC--EEEEEECCEEEEeCC
Confidence 888888765544 466777754 5799999999999988888 888899888876653
No 257
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=7.5e-15 Score=165.93 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=108.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------------------hcCcccccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--------------------------QVGADVPAEIF 1065 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila--------------------------q~G~~vPa~~~ 1065 (1288)
+..+++|++|.+ .+|++++|+||||+||||||++|+|+.... +...|+|....
T Consensus 22 ~~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 22 DKAILKDITIKI-PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CceeEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 356889999999 789999999999999999999999864210 01123443321
Q ss_pred ---ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 ---EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ---~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.+.+.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 112222221 112221 11122234455 566678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|......+ ..++..+. + ++++|++||+.+.+..+++ ++.+++.|.++..|
T Consensus 181 t~~LD~~~~~~l-~~~l~~~~-~-~~tiilvsh~~~~~~~~~d--~v~~l~~g~i~~~g 234 (257)
T PRK14246 181 TSMIDIVNSQAI-EKLITELK-N-EIAIVIVSHNPQQVARVAD--YVAFLYNGELVEWG 234 (257)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CcEEEEEECCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 888888765544 46666664 3 6899999999999988888 88888888776654
No 258
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.58 E-value=7.1e-15 Score=165.07 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=113.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---Hhhc-----------------------C---cccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---LAQV-----------------------G---ADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---laq~-----------------------G---~~vPa~ 1063 (1288)
..+.+||+|++ .+|++++|+|.+||||||+.++|.++.- .... | +++++.
T Consensus 18 v~av~~vs~~i-~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 18 VKAVDGVSFEL-KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEEeceeEEE-cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 36789999999 8899999999999999999999998652 0111 1 233333
Q ss_pred cc-cc----chHHH-----------------------HHHhcCchh---hHhhcccchHHHHHH-HHHHHHhCCCCcEEE
Q 000778 1064 IF-EI----SPVDR-----------------------IFVRMGAKD---HIMAGQSTFLTELSE-TALMLSSATRNSLVV 1111 (1288)
Q Consensus 1064 ~~-~l----~~~d~-----------------------i~~~ig~~d---~i~~~~Stf~~e~~~-~~~il~~a~~~sLvL 1111 (1288)
.. .+ .+-++ ++..+|..+ .+......||++|++ +..+++++.+|+|||
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 20 01 11111 223333332 223344567777765 566677899999999
Q ss_pred EeCCCCCCChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1112 LDELGRGTSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1112 LDEpg~GTs~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.||| |..+|. ++....+|+.|.++.|+++||+|||+.++..+++ +|.+|+.|.+++.|.
T Consensus 177 ADEP---TTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD--ri~VMYaG~iVE~g~ 237 (316)
T COG0444 177 ADEP---TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD--RVAVMYAGRIVEEGP 237 (316)
T ss_pred eCCC---cchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc--eEEEEECcEEEEeCC
Confidence 9999 666663 3334478888888789999999999999999999 999999999999885
No 259
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=162.75 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=108.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC----------------------ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG----------------------ADVPAEIFE 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G----------------------~~vPa~~~~ 1066 (1288)
..++++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..| .|+|+....
T Consensus 16 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 16 NQALKSINLPI-PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeeecceEEe-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 46899999999 789999999999999999999999864310 112 234433211
Q ss_pred --cchHHHHHH----------------------hcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRIFV----------------------RMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i~~----------------------~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
.++.+.+.- .++.. +.+......++ ++.++++.+.+++.+|+|+|||||++
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 122222210 01110 11112223455 56667788888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+..... ...++..+.+ +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 175 ~LD~~~~~~-l~~~l~~~~~--~~tii~~sh~~~~~~~~~d--~i~~l~~G~i~~~g 226 (249)
T PRK14253 175 ALDPIATHK-IEELMEELKK--NYTIVIVTHSMQQARRISD--RTAFFLMGELVEHD 226 (249)
T ss_pred cCCHHHHHH-HHHHHHHHhc--CCeEEEEecCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888875443 4467777743 5799999999999998888 89999999887665
No 260
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.58 E-value=3.6e-15 Score=153.65 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=90.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchH-H
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-T 1092 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~ 1092 (1288)
.+.++++|.+ .+|++++|+||||+|||||+++|+|+.- ...|...-.....++++.+ ++ +
T Consensus 14 ~~l~~~~~~~-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-----------------lS~G 74 (144)
T cd03221 14 LLLKDISLTI-NPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-----------------LSGG 74 (144)
T ss_pred eEEEeeEEEE-CCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-----------------CCHH
Confidence 5678889998 7899999999999999999999998542 1223111100011111111 44 5
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++++.+.+++.+|+++|||||++|.|+.....+. .++..+ ++++|++||+++.+..+++ ++..++.
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~----~~til~~th~~~~~~~~~d--~v~~l~~ 142 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY----PGTVILVSHDRYFLDQVAT--KIIELED 142 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc----CCEEEEEECCHHHHHHhCC--EEEEEeC
Confidence 666788888889999999999998888876544332 334333 5799999999999988877 6666554
No 261
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1e-14 Score=164.18 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... ...| .|+|+...
T Consensus 17 ~~~l~~~sl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 17 YEALHGISLDF-EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 35889999999 78999999999999999999999987530 0112 13333211
Q ss_pred --ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..++.. +.+.....+++ ++.++++.+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 112222221 112221 11122233455 5666778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+. + +.++|++||+++++..+++ +|.+++.|.++..+
T Consensus 176 ~~LD~~~~~~l-~~~l~~~~-~-~~tiiiisH~~~~~~~~~d--~i~~l~~G~i~~~~ 228 (251)
T PRK14251 176 SALDPISSSEI-EETLMELK-H-QYTFIMVTHNLQQAGRISD--QTAFLMNGDLIEAG 228 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHH-c-CCeEEEEECCHHHHHhhcC--EEEEEECCEEEEeC
Confidence 88888755544 45666664 3 5899999999999888888 88888888887654
No 262
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=163.45 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=107.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hc-----------------------Cccccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QV-----------------------GADVPAEIFE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~-----------------------G~~vPa~~~~ 1066 (1288)
.+.+|++|++ .+|++++|+||||+|||||||+|+|+.-. . .. ..|+|+....
T Consensus 17 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 17 QALKKINLDI-EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred eeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 5789999999 78999999999999999999999985321 0 01 1344443211
Q ss_pred --cchHHHHHH----------------------hcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 --ISPVDRIFV----------------------RMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 --l~~~d~i~~----------------------~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
..+.+.+.. .++.. +.+.....+++ ++.++++.+.+++.+|+++|||||++
T Consensus 96 ~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14240 96 FPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTS 175 (250)
T ss_pred CcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 223332211 11110 01122234455 56667888888999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+. + +.++|++||+.+.+..+++ ++.+++.|.++..+
T Consensus 176 ~LD~~~~~~l-~~~l~~~~-~-~~tiii~sH~~~~~~~~~d--~v~~l~~G~i~~~~ 227 (250)
T PRK14240 176 ALDPISTLKI-EELIQELK-K-DYTIVIVTHNMQQASRISD--KTAFFLNGEIVEFG 227 (250)
T ss_pred cCCHHHHHHH-HHHHHHHh-c-CCeEEEEEeCHHHHHhhCC--EEEEEECCEEEEeC
Confidence 8888866654 35666663 3 6899999999999888888 89899888887654
No 263
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.3e-14 Score=163.25 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=107.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------------hhcCcccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------------AQVGADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------------aq~G~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. .+...|+|+...
T Consensus 16 ~~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 16 KKAVKNVTMKI-FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred ceeEeeeeEee-cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 46789999999 78999999999999999999999986421 011223443321
Q ss_pred --ccchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..++..+ ........++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 122222221 1111110 1122233455 5566788888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ +.++..+. + ++++|++||+++.+..+++ ++.+++.|.++..|
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~-~-~~tili~sH~~~~~~~~~d--~i~~l~~G~i~~~g 227 (250)
T PRK14262 175 SALDPIATQRI-EKLLEELS-E-NYTIVIVTHNIGQAIRIAD--YIAFMYRGELIEYG 227 (250)
T ss_pred cccCHHHHHHH-HHHHHHHh-c-CcEEEEEeCCHHHHHHhCC--EEEEEECCEEEEec
Confidence 88888865544 45666664 3 5799999999998888888 88888888877654
No 264
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.8e-15 Score=180.86 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=110.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------H-h-------------hcCccccccc------cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L-A-------------QVGADVPAEI------FE 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------l-a-------------q~G~~vPa~~------~~ 1066 (1288)
.+..+++|.+ .+|++++|+||||||||||||+|+|+.- + . +.-.|+|+.. ..
T Consensus 267 ~~l~~isl~i-~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSV-RAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEE-eCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 4788999999 7899999999999999999999998531 0 0 0112444431 01
Q ss_pred cchHHH---------------------------HHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 ISPVDR---------------------------IFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 l~~~d~---------------------------i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+++.+. ++.+++.. +.......++|+ ++++++.+..++.+|.|||||||++
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 112222 23334442 233444566774 5556777778899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|.|+.....+ ..++..+.+. |.++|++|||++++..+++ ++.+++.|.++..+
T Consensus 426 ~LD~~~~~~l-~~~l~~l~~~-g~tviivsHd~~~~~~~~d--~i~~l~~g~i~~~~ 478 (501)
T PRK11288 426 GIDVGAKHEI-YNVIYELAAQ-GVAVLFVSSDLPEVLGVAD--RIVVMREGRIAGEL 478 (501)
T ss_pred CCCHhHHHHH-HHHHHHHHhC-CCEEEEECCCHHHHHhhCC--EEEEEECCEEEEEE
Confidence 8888866554 4566677654 8899999999999999998 88888877766544
No 265
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.2e-14 Score=161.25 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=104.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~d 1071 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+... ...-.|+|..... ..+.+
T Consensus 17 ~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 17 PVLKDINFSI-KPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 5889999999 78999999999999999999999986421 1111344443211 01111
Q ss_pred HH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 RI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+ ...++....+. .....++ ++.++++.+.+++.+|++||||||++|.|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 11 11112211111 1123455 566677888888999999999999999888866
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
..+ ..++..+. + +.++|++||+++.+.. ++ ++..++.|.++..+
T Consensus 176 ~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d--~i~~l~~g~~~~~~ 219 (229)
T cd03254 176 KLI-QEALEKLM-K-GRTSIIIAHRLSTIKN-AD--KILVLDDGKIIEEG 219 (229)
T ss_pred HHH-HHHHHHhc-C-CCEEEEEecCHHHHhh-CC--EEEEEeCCeEEEeC
Confidence 654 45666663 3 7899999999998864 66 88888888776544
No 266
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.58 E-value=5.5e-15 Score=183.89 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=112.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hc-------------------------Ccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QV-------------------------GADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~-------------------------G~~vPa~ 1063 (1288)
..++++++|++ ..|++++|+||||||||||||+|+|+.-.. .. -.|+|+.
T Consensus 22 ~~~l~~isl~i-~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDVSLQI-EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeeceEEEE-eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 36889999999 789999999999999999999999865310 01 1344443
Q ss_pred cc--c---cchHH----------------------HHHHhcCchh---hHhhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1064 IF--E---ISPVD----------------------RIFVRMGAKD---HIMAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1064 ~~--~---l~~~d----------------------~i~~~ig~~d---~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
.. . ..+.+ .++..+|..+ .+....++++ +|.++++.+.+++.+|++|||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 21 0 11111 1222333322 1233445666 455677788888999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|||++|.|+.....+ ..++..+.++.+.++|++||+++.+..+++ +|.+++.|.++..+
T Consensus 181 DEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d--ri~~l~~G~i~~~g 239 (529)
T PRK15134 181 DEPTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLAD--RVAVMQNGRCVEQN 239 (529)
T ss_pred cCCCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcC--EEEEEECCEEEEeC
Confidence 999888888765554 366777765458899999999999998888 89999988876554
No 267
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=163.36 Aligned_cols=156 Identities=18% Similarity=0.135 Sum_probs=107.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G-----------------------~~vPa~~~ 1065 (1288)
..+++|++|.+ .+|++++|+||||+|||||||+|+|+.-. . ..| .|+|+...
T Consensus 19 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 19 KHALYDITISI-PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeeEEEE-CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 46899999999 78999999999999999999999985321 0 012 23333321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+|+|||||+
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 12222221 111110 01112223344 5667788888899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+.+ +.++|++||+.+.+..+++ ++.+++.|.++..|
T Consensus 178 ~gLD~~~~~~l-~~~l~~~~~--~~tvii~sh~~~~~~~~~d--~v~~l~~G~i~~~g 230 (253)
T PRK14261 178 SALDPIATAKI-EDLIEDLKK--EYTVIIVTHNMQQAARVSD--YTGFMYLGKLIEFD 230 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhh--CceEEEEEcCHHHHHhhCC--EEEEEECCEEEEcC
Confidence 99988866655 456666643 5799999999999988888 88899988877655
No 268
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.57 E-value=6.2e-15 Score=182.25 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=111.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-hhcC----------------------cccccccc---c
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-AQVG----------------------ADVPAEIF---E 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~G----------------------~~vPa~~~---~ 1066 (1288)
..++++++|++ .+|++++|+||||||||||||+|+|+... ...| .|||+... .
T Consensus 14 ~~il~~isl~i-~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEV-RPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46889999999 78999999999999999999999986531 0111 24444321 1
Q ss_pred cchHHHH-------------------------HHhcCchhhH-hhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1067 ISPVDRI-------------------------FVRMGAKDHI-MAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1067 l~~~d~i-------------------------~~~ig~~d~i-~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+.+.+.+ +..++..+.. .....++|+ +.++++.+.+++.+|+++|||||++|.
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2222222 2223332211 122456664 555677777889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|+.....+ ..++..+.++ |.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 173 D~~~~~~l-~~~l~~l~~~-g~tviiitHd~~~~~~~~d--~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 173 TEKETEIL-LDIIRDLKAH-GVACVYISHKLNEVKAVCD--TICVIRDGQHVATK 223 (500)
T ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCcHHHHHHhCC--EEEEEeCCeEeeec
Confidence 88865554 4567777654 8899999999999999888 88899888876554
No 269
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=7.6e-15 Score=161.64 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=121.4
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccc--------ccccchHHHHHHhcCchh-hHh
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE--------IFEISPVDRIFVRMGAKD-HIM 1084 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~--------~~~l~~~d~i~~~ig~~d-~i~ 1084 (1288)
.+.+||+|++ .+|++++|+|.+||||||+-|+|.++.-. ..|...... ......+..++..+|... .+.
T Consensus 27 ~avd~Vsf~i-~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 27 KAVDGVSFSI-KEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred EEecceeEEE-cCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 6889999999 88999999999999999999999986532 223222111 112233455677788654 555
Q ss_pred hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1085 AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1085 ~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
+....|+ ++.++++.+.+++.+|+|+++||| |+.+|. ++....++..|.++.|.+.||+|||+..+..+++ +
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEp---vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd--r 179 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEP---VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD--R 179 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCc---hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc--c
Confidence 6667777 566778888889999999999999 777773 3334478888888889999999999999999999 9
Q ss_pred eEEeeeEEEEecCC
Q 000778 1162 VSLCHMACQVGNGV 1175 (1288)
Q Consensus 1162 v~~~~~~~~~~~g~ 1175 (1288)
|.+|+.|.++..|.
T Consensus 180 i~VMy~G~iVE~g~ 193 (268)
T COG4608 180 IAVMYLGKIVEIGP 193 (268)
T ss_pred EEEEecCceeEecC
Confidence 99999999998774
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.57 E-value=8.4e-15 Score=185.13 Aligned_cols=158 Identities=11% Similarity=0.103 Sum_probs=115.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------h----------------------------hcC
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------A----------------------------QVG 1057 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------a----------------------------q~G 1057 (1288)
..+++||+|++ .+|++++|+||||||||||||+|+|+.-. . ++
T Consensus 29 ~~~l~~is~~v-~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i- 106 (623)
T PRK10261 29 IAAVRNLSFSL-QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM- 106 (623)
T ss_pred eeEEEeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE-
Confidence 36899999999 78999999999999999999999985310 0 11
Q ss_pred ccccccc-----cccchHHH----------------------HHHhcCchh---hHhhcccchHHHH-HHHHHHHHhCCC
Q 000778 1058 ADVPAEI-----FEISPVDR----------------------IFVRMGAKD---HIMAGQSTFLTEL-SETALMLSSATR 1106 (1288)
Q Consensus 1058 ~~vPa~~-----~~l~~~d~----------------------i~~~ig~~d---~i~~~~Stf~~e~-~~~~~il~~a~~ 1106 (1288)
.+|++.. ..+++.+. ++..+|..+ .+.....++|++| ++++.+.+++.+
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~ 186 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCR 186 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCC
Confidence 2444432 11222222 233444421 2344556677544 567777888999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+|||||||++|.|+.....+ ..++..+.++.|+++|++||+++++..+++ +|.+++.|.++..|.
T Consensus 187 P~lLllDEPt~~LD~~~~~~l-~~ll~~l~~~~g~tvi~itHdl~~~~~~ad--ri~vl~~G~i~~~g~ 252 (623)
T PRK10261 187 PAVLIADEPTTALDVTIQAQI-LQLIKVLQKEMSMGVIFITHDMGVVAEIAD--RVLVMYQGEAVETGS 252 (623)
T ss_pred CCEEEEeCCCCccCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCC--EEEEeeCCeecccCC
Confidence 999999999888888755544 467778866568999999999999999998 999999999887653
No 271
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.57 E-value=1.1e-14 Score=181.02 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------H--h------------------hcCcccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L--A------------------QVGADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------l--a------------------q~G~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.- + . +.-.|+|+...
T Consensus 297 ~~il~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEV-KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 35899999999 7899999999999999999999998631 1 0 00124454321
Q ss_pred ---ccchHHHH--------------------HHhcCchh-----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 ---EISPVDRI--------------------FVRMGAKD-----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ---~l~~~d~i--------------------~~~ig~~d-----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+.+.+.+ +..+|..+ .+.....++| ++.++++.+.+++.+|+|||||||+
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12222222 23334322 2333445666 4556677888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+.++.|.++|++||+++++..+++ ++.+++.|.++..+
T Consensus 456 ~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~~d--~i~~l~~G~i~~~g 510 (520)
T TIGR03269 456 GTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVLDVCD--RAALMRDGKIVKIG 510 (520)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhCC--EEEEEECCEEEEEC
Confidence 888888665544 56666655558899999999999999888 88888888877654
No 272
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=1.3e-14 Score=161.76 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=104.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.+|++|.+ .+|++++|+||||+|||||||+|+|+.-. .+.-.|+|.... ...+.
T Consensus 14 ~~~l~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 14 RPVLKDVSFTI-PAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 35788999998 78999999999999999999999986421 011123443321 11112
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+. .....++ ++.++++.+.+++.+|++||||||++|.|+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 211 11112221111 1123455 56667888888999999999999999988876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. .++..+. + +.++|++||+.+.+.. ++ ++..++.|.++..+
T Consensus 173 ~~~l~-~~l~~~~-~-~~tiii~sh~~~~~~~-~d--~~~~l~~g~i~~~~ 217 (236)
T cd03253 173 EREIQ-AALRDVS-K-GRTTIVIAHRLSTIVN-AD--KIIVLKDGRIVERG 217 (236)
T ss_pred HHHHH-HHHHHhc-C-CCEEEEEcCCHHHHHh-CC--EEEEEECCEEEeeC
Confidence 55444 5566664 4 7899999999998865 66 88888888776543
No 273
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=162.53 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh----cC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----VG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq----~G-----------------------~~vPa~~~ 1065 (1288)
..++++++|.+ .+|++++|+||||+||||||++|+|+.-... .| .|+|+...
T Consensus 17 ~~il~~~s~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 17 HQVLKNINMDF-PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred eeEecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 35789999998 7899999999999999999999998643210 12 23333321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 12222221 111111 11122233444 5667788888899999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+ ..++..+. + ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 ~~LD~~~~~~l-~~~l~~~~-~-~~tilivsh~~~~~~~~~d--~i~~l~~G~i~~~~ 228 (251)
T PRK14249 176 SALDPVSTMRI-EELMQELK-Q-NYTIAIVTHNMQQAARASD--WTGFLLTGDLVEYG 228 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHhhCC--EEEEEeCCeEEEeC
Confidence 88888866654 35666663 3 7899999999999999888 88888888876654
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1e-14 Score=184.39 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=115.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------------hhcCccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------------AQVGADVPAEI----- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------------aq~G~~vPa~~----- 1064 (1288)
..+.++++|++ .+|++++|+||||||||||+|+|+|+.-. ...-.|||+..
T Consensus 337 ~~~l~~vs~~i-~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDL-WPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 35889999999 78999999999999999999999986310 01123555542
Q ss_pred cccchHHH----------------------HHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1065 FEISPVDR----------------------IFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1065 ~~l~~~d~----------------------i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
..+.+.+. ++..+|.. +........+|+ +.++++.+.+++.+|+|||||||++|.|
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11222222 23334443 233444566775 4456777788899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.....+ ..+|..+.++.|.++||+|||++++..+++ +|.+++.|.++..|.
T Consensus 496 ~~~~~~i-~~ll~~l~~~~g~tvi~isHdl~~v~~~~d--ri~vl~~G~iv~~g~ 547 (623)
T PRK10261 496 VSIRGQI-INLLLDLQRDFGIAYLFISHDMAVVERISH--RVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 7755544 466767766558899999999999999998 899999999887663
No 275
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.8e-14 Score=163.58 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=105.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.-. ...| .|+|+...
T Consensus 23 ~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 23 FLAVKNVWLDI-PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEEeecceEEE-cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 36789999999 78999999999999999999999986421 1112 22333211
Q ss_pred c--cchHHHHH--------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 E--ISPVDRIF--------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 ~--l~~~d~i~--------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
. .++.+.+. ..++..+ ........++ ++.++++.+.+++.+|++||||||++|
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 12222221 1111110 1111223355 456677888888999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee---------eEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH---------MACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~---------~~~~~~~g 1174 (1288)
.|+.....+ ..++..+.+ +.++|++||+.+.+..+++ +|.+++ .|.++..+
T Consensus 182 LD~~~~~~l-~~~L~~~~~--~~tvi~vtH~~~~~~~~~d--~v~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 182 LDPISTLRI-EELMHELKE--QYTIIIVTHNMQQAARVSD--MTAFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred CCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCC--EEEEEecccccccccCceEEEeC
Confidence 888866654 466666644 4799999999999999998 888887 56666554
No 276
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.57 E-value=1.7e-14 Score=164.12 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------HhhcCcccccccccc--chHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFEI--SPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------laq~G~~vPa~~~~l--~~~d 1071 (1288)
..+++|++|.+ .+|++++|+||||+||||||++|+++.- +.+...++|+...-+ ++.+
T Consensus 17 ~~~l~~isl~I-~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~ 95 (275)
T cd03289 17 NAVLENISFSI-SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK 95 (275)
T ss_pred CcceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHH
Confidence 46889999999 7899999999999999999999998641 111224555543211 1112
Q ss_pred H--------------HHHhcCchhhHhhccc-----------chHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 R--------------IFVRMGAKDHIMAGQS-----------TFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 ~--------------i~~~ig~~d~i~~~~S-----------tf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
. .+..+|..+.+..... .|++ +.++++.+.+++.+|+++|||||++|.|+....
T Consensus 96 nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 96 NLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred HhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 2 2233444443333222 2664 555677777889999999999998888888655
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+. .++..+. .++|+|++||+++.+.. ++ +|.+++.|.++..|
T Consensus 176 ~l~-~~l~~~~--~~~tii~isH~~~~i~~-~d--ri~vl~~G~i~~~g 218 (275)
T cd03289 176 VIR-KTLKQAF--ADCTVILSEHRIEAMLE-CQ--RFLVIEENKVRQYD 218 (275)
T ss_pred HHH-HHHHHhc--CCCEEEEEECCHHHHHh-CC--EEEEecCCeEeecC
Confidence 444 4444442 37999999999998765 66 89999988887765
No 277
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.2e-14 Score=150.81 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=117.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCc-------------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGA------------- 1058 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~------------- 1058 (1288)
++.|.+|+++.+ ++|.+..|+||||+||||||.+++.+.- +|+.-+
T Consensus 13 ~~~vl~~isl~i-~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 13 TKVVLDDVSLDI-PKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CEEeeccceeee-cCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 478999999999 7899999999999999999999987441 122111
Q ss_pred --------cccccccccch-----HHHHHHhcCchhhHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHH
Q 000778 1059 --------DVPAEIFEISP-----VDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1059 --------~vPa~~~~l~~-----~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~-~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
..|-...++.- +++-+.-+...+--.+.+..++++.++.+.|.. +|.+.+.|+||||-...|..-.
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 11333333332 223334445555555556667777777666654 6899999999999555555545
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+ +.+|+.++++.|.|+++|-||.++|..+++ .|+-+..|.++..|.
T Consensus 172 v~i-Mk~Lrrla~el~KtiviVlHDINfAS~YsD--~IVAlK~G~vv~~G~ 219 (252)
T COG4604 172 VQI-MKILRRLADELGKTIVVVLHDINFASCYSD--HIVALKNGKVVKQGS 219 (252)
T ss_pred HHH-HHHHHHHHHHhCCeEEEEEecccHHHhhhh--heeeecCCEEEecCC
Confidence 544 478899999999999999999999999998 899999999988775
No 278
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.57 E-value=5.7e-15 Score=182.11 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=108.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhc----------------------Ccccccccc---c-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV----------------------GADVPAEIF---E- 1066 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~----------------------G~~vPa~~~---~- 1066 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+...... -.|+|+... .
T Consensus 273 ~~il~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQV-NPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 45899999999 78999999999999999999999985321001 123332210 0
Q ss_pred -cch-------------------------HHHHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1067 -ISP-------------------------VDRIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1067 -l~~-------------------------~d~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
..+ +..++..+|..+ ......+++|+ +.++++.+.+++.+|+|||||||++|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 000 112233344433 33344456664 55567777888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh-hcCCCceEEeeeEEEEec
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD-YKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~-~~~~~~v~~~~~~~~~~~ 1173 (1288)
.|+.....+. .+|..+.++.++++|++||+.+++.. +++ ++.+++.|.++..
T Consensus 432 LD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~~~~~d--~v~~l~~G~i~~~ 484 (490)
T PRK10938 432 LDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAPACITH--RLEFVPDGDIYRY 484 (490)
T ss_pred CCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhhhhhhe--eEEEecCCceEEe
Confidence 8888666554 66666766534579999999999876 466 8888888876653
No 279
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.57 E-value=1.4e-14 Score=158.39 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=97.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------------hhcCcccccccc---ccchHHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------------AQVGADVPAEIF---EISPVDR 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------------aq~G~~vPa~~~---~l~~~d~ 1072 (1288)
..+.++++|.+ .+|++++|+||||+||||||++|+|+... ....+|++.... ..++.+.
T Consensus 15 ~~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 15 RVLFSGLSFTL-AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred eEEEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 46889999999 78999999999999999999999986411 011124443221 1222222
Q ss_pred -----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1073 -----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1073 -----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
++..+|..+........++ ++.++++.+.+++.+|+|||||||++|.|+.....+ +.++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 2333444433333445566 455677888888999999999999888888866654 466666
Q ss_pred HHhccCcEEEEEcCCchhhhh
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+.++ ++++|++||+++.+..
T Consensus 173 ~~~~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 173 HLAQ-GGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHC-CCEEEEEeCCchhhcc
Confidence 6554 8899999999988765
No 280
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=168.49 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=119.9
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------ 1053 (1288)
..|.+++...-+-. ....++++++|++ .+|++++|+|||||||||||++|+++.-.
T Consensus 79 ~~i~~~nls~~y~~-----~~~~~L~~is~~I-~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----RTKHVLHDLNLDI-KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEecC-----CCceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 45777766543311 1246899999999 78999999999999999999999986521
Q ss_pred ---------hhcCcccccccc--ccchHHHHH----------------------HhcCc----hhhHhhcccchH-HHHH
Q 000778 1054 ---------AQVGADVPAEIF--EISPVDRIF----------------------VRMGA----KDHIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1054 ---------aq~G~~vPa~~~--~l~~~d~i~----------------------~~ig~----~d~i~~~~Stf~-~e~~ 1095 (1288)
.+.-.|||+... ..++.+.+. ...+. ...+......++ ++.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 111234554421 122223321 11111 112223345565 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+.+++.+|++||||||++|.|+..... ...++..+.+ ++|+|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~--~~Tii~iTH~l~~i~~~~D--riivl~~G~i~e~g~ 307 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAK-IEELILELKK--KYSIIIVTHSMAQAQRISD--ETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhc--CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 7788888899999999999988888876555 4456666643 6899999999999998888 999999999988764
No 281
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2e-14 Score=161.96 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=108.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..| .|+|+...
T Consensus 17 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 17 KQAVKNVNLDV-QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EEeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 46889999999 789999999999999999999999964210 011 23343321
Q ss_pred ---ccchHHHHHH--h-cC--ch---------------------hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCC
Q 000778 1066 ---EISPVDRIFV--R-MG--AK---------------------DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 ---~l~~~d~i~~--~-ig--~~---------------------d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEp 1115 (1288)
.+++.+.+.. . .+ .. +......+.++ ++.++++.+.+++.+|+|+|||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1233333311 0 01 00 01112234455 566678888889999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
++|.|+.....+ ..+++.+. + ++++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 176 ~~~LD~~~~~~l-~~~l~~~~-~-~~tiii~sH~~~~~~~~~d--~i~~l~~G~i~~~~ 229 (252)
T PRK14272 176 TSALDPASTARI-EDLMTDLK-K-VTTIIIVTHNMHQAARVSD--TTSFFLVGDLVEHG 229 (252)
T ss_pred CccCCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888888755544 45666664 3 6899999999999988888 89999988887655
No 282
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=1.6e-14 Score=147.52 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=114.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------HhhcCccccccccc-------cch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEIFE-------ISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------laq~G~~vPa~~~~-------l~~ 1069 (1288)
.-|+.+|+|.. ..|+++.|+|.+|||||||||+|..+-- ....|..+|++.-. +++
T Consensus 19 ~eVLKGvSL~A-~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 19 HEVLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred chhhcceeeec-CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 46888999998 7899999999999999999999986431 12234455554311 111
Q ss_pred H-----------------------------------HHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEe
Q 000778 1070 V-----------------------------------DRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1070 ~-----------------------------------d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLD 1113 (1288)
+ ..++.++|..+........+++ +.++.+.+.++|..|.++|+|
T Consensus 98 VFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFD 177 (256)
T COG4598 98 VFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFD 177 (256)
T ss_pred hhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeec
Confidence 1 1234455555555545555564 455677777889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
||++..||.-.-. ...++..|+++ |.|.+++||.+.++..... .|+++|.|.+...|.
T Consensus 178 EPTSALDPElVgE-VLkv~~~LAeE-grTMv~VTHEM~FAR~Vss--~v~fLh~G~iEE~G~ 235 (256)
T COG4598 178 EPTSALDPELVGE-VLKVMQDLAEE-GRTMVVVTHEMGFARDVSS--HVIFLHQGKIEEEGP 235 (256)
T ss_pred CCcccCCHHHHHH-HHHHHHHHHHh-CCeEEEEeeehhHHHhhhh--heEEeecceecccCC
Confidence 9966666653222 34688888876 8999999999999999988 899999999887764
No 283
>PRK13409 putative ATPase RIL; Provisional
Probab=99.56 E-value=7.5e-15 Score=183.38 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=111.2
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------hcCcccccccc---ccch--------------
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------QVGADVPAEIF---EISP-------------- 1069 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------q~G~~vPa~~~---~l~~-------------- 1069 (1288)
+.+++++|.+ .+|++++|+||||+|||||||+|+|+.-.. ..-.|+|+... .+++
T Consensus 353 ~~l~~~s~~i-~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 353 FSLEVEGGEI-YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred EEEEecceEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence 4578888888 789999999999999999999999864210 01134554321 1111
Q ss_pred --HHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEE
Q 000778 1070 --VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFS 1146 (1288)
Q Consensus 1070 --~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~ 1146 (1288)
...++.+++..+......+++| +|+++++.+..++.+|+|+|||||++|.|+.....+. .++..++++.+.++|++
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 510 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV 510 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 2334556666666666677787 5666788888899999999999998888888666554 66777766558899999
Q ss_pred cCCchhhhhhcCCCceEEeee
Q 000778 1147 THYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1147 TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
|||++++..+++ +|.+++.
T Consensus 511 sHD~~~~~~~aD--rvivl~~ 529 (590)
T PRK13409 511 DHDIYMIDYISD--RLMVFEG 529 (590)
T ss_pred eCCHHHHHHhCC--EEEEEcC
Confidence 999999999988 7777754
No 284
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.5e-14 Score=162.10 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=107.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc-
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF- 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~- 1065 (1288)
.++++++|.+ .+|++++|+||||+||||||++|+|+.-.. ..| .|+|....
T Consensus 21 ~il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 21 KILEGVSMEI-YQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eEeeceEEEE-cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 5789999999 789999999999999999999999975321 012 12232211
Q ss_pred -ccchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1066 -EISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1066 -~l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
...+.+.+. ..++..+ .+......++ ++.++++.+..++.+|+++|||||++
T Consensus 100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~ 179 (261)
T PRK14258 100 FPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179 (261)
T ss_pred CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 112222221 1111100 1112223455 45566778888899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee-----EEEEecC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM-----ACQVGNG 1174 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~-----~~~~~~g 1174 (1288)
|.|+.....+ ..++..+....+.++|++||+++++..+++ +|.+++. |.++..+
T Consensus 180 ~LD~~~~~~l-~~~l~~l~~~~~~tiiivsH~~~~i~~~~d--~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 180 GLDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQVSRLSD--FTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred cCCHHHHHHH-HHHHHHHHHhCCCEEEEEECCHHHHHHhcC--EEEEEccCCCcCceEEEeC
Confidence 8887755443 455555644347899999999999999998 8888887 8777655
No 285
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.2e-14 Score=153.05 Aligned_cols=172 Identities=22% Similarity=0.210 Sum_probs=115.8
Q ss_pred eEEEecCCCCccccccCCCC-cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKG-EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------- 1051 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~-~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-------------------- 1051 (1288)
.|+|++. |--++ + +.|+++++|++ ..|++.+|+||||||||||.++|+|.-
T Consensus 3 ~L~I~dL-hv~v~------~~keILkgvnL~v-~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDL-HVEVE------GKKEILKGVNLTV-KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeee-EEEec------CchhhhcCcceeE-cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 4666665 33222 2 48999999999 789999999999999999999999831
Q ss_pred --HHhhcCccc----cccccccchHHH------------------------HHHhcCchh-hHhhcc-cchHHHHHHHHH
Q 000778 1052 --ILAQVGADV----PAEIFEISPVDR------------------------IFVRMGAKD-HIMAGQ-STFLTELSETAL 1099 (1288)
Q Consensus 1052 --ilaq~G~~v----Pa~~~~l~~~d~------------------------i~~~ig~~d-~i~~~~-Stf~~e~~~~~~ 1099 (1288)
--|..|.|+ |.+-.-+...+- ....++... .+.+.. -.||+.-+....
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 236777776 332222221111 122222222 111111 245643333444
Q ss_pred HHH-hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1100 MLS-SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1100 il~-~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+. ++.+|+|+|||||-+|.|-- +..+....++.+... +..+|++|||..++.+.. ...|.++..|+++..|.
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDId-alk~V~~~i~~lr~~-~~~~liITHy~rll~~i~-pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDID-ALKIVAEGINALREE-GRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHH-HHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcC-CCEEEEEECCEEEecCC
Confidence 444 46899999999999998854 555556778888665 889999999999988765 23788889999998774
No 286
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.2e-14 Score=163.41 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+|+||+|||||||+|+|+..+ ...| .|+|+...
T Consensus 37 ~~il~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 37 DHALKNINLDI-HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred cceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 35889999999 78999999999999999999999986531 1122 23333321
Q ss_pred c--cchHHHHHH--hc-Cc-----------------------hhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIFV--RM-GA-----------------------KDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~~--~i-g~-----------------------~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+.- +. +. .+.+......++ ++.++++.+..++.+|+++|||||+
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1 122333210 00 10 011112233455 5666778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .++..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+
T Consensus 196 ~~LD~~~~~~l~-~~l~~~~~--~~tiiivsH~~~~i~~~~d--~i~~l~~G~i~~~g 248 (271)
T PRK14238 196 SALDPISTLKVE-ELVQELKK--DYSIIIVTHNMQQAARISD--KTAFFLNGYVNEYD 248 (271)
T ss_pred CcCCHHHHHHHH-HHHHHHHc--CCEEEEEEcCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888888665544 56666643 6899999999999988888 88899999887655
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.56 E-value=1.9e-14 Score=157.29 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=104.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~d 1071 (1288)
.+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+...- ..+.+
T Consensus 22 ~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ 100 (207)
T cd03369 22 PVLKNVSFKV-KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100 (207)
T ss_pred ccccCceEEE-CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHH
Confidence 6889999999 78999999999999999999999986411 1112344443211 12222
Q ss_pred HHH--HhcCch---hh--HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEE
Q 000778 1072 RIF--VRMGAK---DH--IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRG 1143 (1288)
Q Consensus 1072 ~i~--~~ig~~---d~--i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~v 1143 (1288)
.+. ...... +. +......++ ++.++++.+.+++.+|+++|||||++|.|+..... .+.++..+. . +.++
T Consensus 101 ~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~-~-~~ti 177 (207)
T cd03369 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL-IQKTIREEF-T-NSTI 177 (207)
T ss_pred HhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHH-HHHHHHHhc-C-CCEE
Confidence 220 000000 00 122334455 56777888888999999999999988888876554 345666653 3 7899
Q ss_pred EEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1144 LFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1144 l~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++||+.+++.. ++ ++.+++.|.++..|
T Consensus 178 ii~th~~~~~~~-~d--~v~~l~~g~i~~~g 205 (207)
T cd03369 178 LTIAHRLRTIID-YD--KILVMDAGEVKEYD 205 (207)
T ss_pred EEEeCCHHHHhh-CC--EEEEEECCEEEecC
Confidence 999999998865 66 88888888776543
No 288
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.56 E-value=3.5e-14 Score=173.35 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=103.8
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------hhcC---cccccccc---ccchHHH-------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------AQVG---ADVPAEIF---EISPVDR------- 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------aq~G---~~vPa~~~---~l~~~d~------- 1072 (1288)
++.+.++++|.+ .+|+.++|+|+||+|||||||+|+|.... ...| .++++... ...+++.
T Consensus 15 ~~~l~~~~~l~~-~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 15 DRPLLENVSLTL-NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CceeecCCccee-CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 467889999999 78999999999999999999999984411 1111 12333221 1112221
Q ss_pred --------------------------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCC
Q 000778 1073 --------------------------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRN 1107 (1288)
Q Consensus 1073 --------------------------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~ 1107 (1288)
++..+|..+. ....+++++ +..+++.+..+..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 1222233322 345577774 555677777889999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
++|||||| |+++|..+|.| |+.+......++|+||||.++....++ .|.-++.|
T Consensus 173 DlLLLDEP---TNHLD~~~i~W--Le~~L~~~~gtviiVSHDR~FLd~V~t--~I~~ld~g 226 (530)
T COG0488 173 DLLLLDEP---TNHLDLESIEW--LEDYLKRYPGTVIVVSHDRYFLDNVAT--HILELDRG 226 (530)
T ss_pred CEEEEcCC---CcccCHHHHHH--HHHHHHhCCCcEEEEeCCHHHHHHHhh--heEEecCC
Confidence 99999999 99999999987 554444445599999999999999988 66666555
No 289
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.1e-14 Score=152.22 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=94.0
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc-cccccccccchHHHHHHhcCchhhHhhcccchH-
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL- 1091 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~-~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~- 1091 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+++... ..|. ++......-.....+...++.- ..++
T Consensus 13 ~~l~~~~~~i-~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~-------~qlS~ 83 (157)
T cd00267 13 TALDNVSLTL-KAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELRRRIGYV-------PQLSG 83 (157)
T ss_pred eeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHHhceEEE-------eeCCH
Confidence 5778888988 78999999999999999999999986432 2221 1111100000001111111110 0144
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+|.++++.+.+++.+|+++|||||++|+|......+. .++..+... ++++|++||+++.+..+++ ++..++
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~-~~tii~~sh~~~~~~~~~d--~i~~l~ 154 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEE-GRTVIIVTHDPELAELAAD--RVIVLK 154 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCC--EEEEEe
Confidence 5666777888889999999999999999987655544 555556554 6899999999999988877 555443
No 290
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3e-14 Score=162.43 Aligned_cols=171 Identities=17% Similarity=0.098 Sum_probs=115.3
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC----------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG---------- 1057 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G---------- 1057 (1288)
+.|.+++....+ .+..+.++++|.+ .+|++++|+||||+|||||+|+|+|+.-. ...|
T Consensus 24 ~~l~~~nl~~~~-------~~~~il~~vs~~i-~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLFY-------GDKQALFDISMRI-PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEEE-------CCeeEeeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 456666554322 1246889999999 78999999999999999999999986421 0112
Q ss_pred -------------ccccccccc--cchHHHHH----------------------HhcCchh----hHhhcccchH-HHHH
Q 000778 1058 -------------ADVPAEIFE--ISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELS 1095 (1288)
Q Consensus 1058 -------------~~vPa~~~~--l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~ 1095 (1288)
.|+|+.... .++.+.+. ..++..+ .+......++ ++.+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 244433211 12233321 1111110 0111223344 5666
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+.+++.+|+++|||||++|.|+.....+ +.++..+.+ +.++|++||+++.+..+++ ++.+++.|.++..+.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~~~~~~d--~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKS--KYTIVIVTHNMQQAARVSD--YTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh--CCeEEEEeCCHHHHHhhCC--EEEEEECCEEEecCC
Confidence 78888889999999999999999988855544 466666643 5799999999999988888 899999998877653
No 291
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.4e-14 Score=161.32 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-h---hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-A---QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-a---q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. . +.| .|+|+...
T Consensus 18 ~~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 18 FEALKGIDLDF-NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 46889999999 78999999999999999999999986320 0 111 23444321
Q ss_pred c--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. ..+.+.+. .+++.. +........++ ++.++++.+++++.+|+++|||||+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 12222221 011110 11122233455 5556778888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+|.|+.....+. .+|..+.+ +.++|++||+.+.+..+++ +|.+++.|.++..+
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~--~~tii~vsH~~~~~~~~~d--~i~~l~~G~i~~~~ 229 (252)
T PRK14255 177 SALDPISSTQIE-NMLLELRD--QYTIILVTHSMHQASRISD--KTAFFLTGNLIEFA 229 (252)
T ss_pred ccCCHHHHHHHH-HHHHHHHh--CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEeC
Confidence 888887666554 56666644 4799999999999988888 88899888877654
No 292
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.56 E-value=1.7e-14 Score=159.52 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=97.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------h------------------hcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------A------------------QVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------a------------------q~G~~vPa~~ 1064 (1288)
..+..+++|.+ .+|++++|+||||+|||||||+|+|+.-. . +...|+|+..
T Consensus 21 ~~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTV-NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 36889999999 78999999999999999999999986311 0 0112444432
Q ss_pred cc---cchHHH---------------------HHHhcCchhhH-hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1065 FE---ISPVDR---------------------IFVRMGAKDHI-MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1065 ~~---l~~~d~---------------------i~~~ig~~d~i-~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
.. +.+.+. ++..+|..+.+ ......++ ++.++++.+.+++.+|+++|||||++|
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 179 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11 111111 12223332221 22334455 556677888888999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.|+.....+. .++..+.++ ++++|++||+.+++..+++
T Consensus 180 LD~~~~~~l~-~~l~~~~~~-g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 180 LDAANRQVVV-ELIAEAKAR-GAALIGIFHDEEVRELVAD 217 (224)
T ss_pred CCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcc
Confidence 8888666544 566666554 8899999999999887777
No 293
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.56 E-value=1.3e-14 Score=160.71 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=99.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPVD 1071 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~d 1071 (1288)
.+.++++|.+ .+|++++|+||||+|||||+++|+|+.-. .+.-.|+|+.... ..+.+
T Consensus 28 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 28 LVLQDVSFTL-HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 5899999999 78999999999999999999999986411 0111234433210 11111
Q ss_pred HH------------------------HHhc--CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 RI------------------------FVRM--GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~i------------------------~~~i--g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+ +..+ |....+......++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11 1111 22222233344455 566677888888999999999999888888876
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
..+. .++..+.+ +.++|++||+++++.. ++ +|..++.|
T Consensus 187 ~~l~-~~l~~~~~--~~tii~~sh~~~~~~~-~d--~i~~l~~g 224 (226)
T cd03248 187 QQVQ-QALYDWPE--RRTVLVIAHRLSTVER-AD--QILVLDGG 224 (226)
T ss_pred HHHH-HHHHHHcC--CCEEEEEECCHHHHHh-CC--EEEEecCC
Confidence 6554 45555543 5899999999999864 66 77776654
No 294
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.55 E-value=1.4e-14 Score=196.69 Aligned_cols=157 Identities=12% Similarity=0.068 Sum_probs=119.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc---ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~---~l~~ 1069 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.. ..++ .|+|+..+ .++.
T Consensus 1952 ~~aL~~ISf~I-~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I-Gy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGV-RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM-GYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEE-cCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE-EEEeccccCCCCCCH
Confidence 46899999999 8899999999999999999999998641 1122 35565432 1222
Q ss_pred HHH---------------------HHHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1070 VDR---------------------IFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1070 ~d~---------------------i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.+. ++..+|..+.......++++++ ++++.+++++.+|++||||||++|.|+.....
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~- 2108 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRM- 2108 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH-
Confidence 222 2333444444444456677555 55778888999999999999999999986554
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.++..+.++ |+++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 2109 l~~lL~~l~~~-g~TIILtTH~mee~e~lcD--rV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2109 LWNTIVSIIRE-GRAVVLTSHSMEECEALCT--RLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCC--EEEEEECCEEEEECC
Confidence 56777777665 8999999999999999999 999999999988775
No 295
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.2e-14 Score=173.12 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=113.8
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcC--------cccccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVG--------ADVPAE 1063 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G--------~~vPa~ 1063 (1288)
+..++++++|.+ .+|++++|+|.||+|||||+|.|+|+.-. .+.| ..+|.-
T Consensus 20 gV~AL~~v~l~v-~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 20 GVKALDGVSLTV-RPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred CceeeccceeEE-eCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 357899999999 89999999999999999999999995411 0111 112211
Q ss_pred c-----------cc-cchHH---------HHHHhcCchhhHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCCh
Q 000778 1064 I-----------FE-ISPVD---------RIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1064 ~-----------~~-l~~~d---------~i~~~ig~~d~i~~~~Stf~~e~~~~~~i-l~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+ .. .+++| .++.++|..........+++...+++..| .+++.++.||||||||+..+.
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 0 01 22222 34555665333444555666444444333 334578899999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+...+. .+++.|..+ |..+||+||.++.+..++| +|.++..|+.+.+..
T Consensus 179 ~E~~~Lf-~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~D--ritVlRDG~~v~~~~ 228 (500)
T COG1129 179 KETERLF-DLIRRLKAQ-GVAIIYISHRLDEVFEIAD--RITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHH-HHHHHHHhC-CCEEEEEcCcHHHHHHhcC--EEEEEeCCEEeeecc
Confidence 8877654 788888654 9999999999999999999 999999999887654
No 296
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=3.1e-14 Score=161.28 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=106.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhc-----------------------Ccccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQV-----------------------GADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~-----------------------G~~vPa~~~ 1065 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... ... -.|+|+...
T Consensus 21 ~~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 21 FMAVRDSHVPI-RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 46889999999 78999999999999999999999886421 011 133443321
Q ss_pred --ccchHHHH--------------------HHhcCchhhH----hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1066 --EISPVDRI--------------------FVRMGAKDHI----MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1066 --~l~~~d~i--------------------~~~ig~~d~i----~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
...+.+.+ +..++....+ ......++ ++.++++.+++++.+|+++|||||++|
T Consensus 100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsg 179 (261)
T PRK14263 100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179 (261)
T ss_pred cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 12222322 1122221111 11223455 555667788888999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee--------eEEEEecC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH--------MACQVGNG 1174 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~--------~~~~~~~g 1174 (1288)
.|+.....+ +.++..+. + +.++|++||+++.+..+++ +|.+++ .|.++..|
T Consensus 180 LD~~~~~~l-~~~l~~~~-~-~~tii~isH~~~~i~~~~d--~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 180 LDPIATRRV-EELMVELK-K-DYTIALVTHNMQQAIRVAD--TTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred CCHHHHHHH-HHHHHHHh-c-CCeEEEEeCCHHHHHHhCC--EEEEEecccccccCCceEEEeC
Confidence 988865544 45666664 3 6899999999999988888 888885 56666554
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.55 E-value=1.1e-14 Score=180.16 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhc----------------------Ccccccccc-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV----------------------GADVPAEIF----- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~----------------------G~~vPa~~~----- 1065 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.-.... -.|+|+...
T Consensus 273 ~~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSL-RRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEE-eCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 35889999999 78999999999999999999999986421101 123443310
Q ss_pred -ccchH--------------------------HHHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 -EISPV--------------------------DRIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 -~l~~~--------------------------d~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+++. ..++.+++..+ .......++| +|.++++.+..++.+|.|||||||+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 01111 12233344432 2333445666 4556677777889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
+|.|+..... .+.++..+.++ |.++|++|||++++..+++ ++.+++.|.++..
T Consensus 432 ~~LD~~~~~~-l~~~l~~l~~~-g~tviivsHd~~~~~~~~d--~v~~l~~G~i~~~ 484 (500)
T TIGR02633 432 RGVDVGAKYE-IYKLINQLAQE-GVAIIVVSSELAEVLGLSD--RVLVIGEGKLKGD 484 (500)
T ss_pred CCcCHhHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCC--EEEEEECCEEEEE
Confidence 8888875554 34677777665 8899999999999999998 8888887776643
No 298
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.55 E-value=1.9e-14 Score=156.18 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=94.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-. ...-.|+|+... ..++.
T Consensus 13 ~~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTL-NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 46789999999 78999999999999999999999985310 011124444321 11222
Q ss_pred H-----------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1071 D-----------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1071 d-----------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
+ .++..++..+.+.....+++ +++++++.+.+++.+|+++|||||++|.|...... .+.++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~-l~~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVAL-LAGLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH-HHHHH
Confidence 2 22333444444444445566 56667888888999999999999988888875544 44666
Q ss_pred HHHHhccCcEEEEEcCCchh
Q 000778 1133 EHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l 1152 (1288)
..+.++ +.++|++||+...
T Consensus 171 ~~~~~~-~~tii~~sH~~~~ 189 (198)
T TIGR01189 171 RAHLAR-GGIVLLTTHQDLG 189 (198)
T ss_pred HHHHhC-CCEEEEEEccccc
Confidence 666544 7899999999753
No 299
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.55 E-value=1.3e-14 Score=157.90 Aligned_cols=139 Identities=16% Similarity=0.079 Sum_probs=96.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccc---cccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEI---FEISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~---~~l~~ 1069 (1288)
..+.++++|++ .+|++++|+||||+||||||++|+|+.- ..++ .|+|+.. ....+
T Consensus 14 ~~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHL-PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL-CFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe-EEeccccccCcCCCH
Confidence 35889999999 7899999999999999999999998541 1122 2344321 11222
Q ss_pred HHH----------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1070 VDR----------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1070 ~d~----------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
.+. ++..++..+........++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~~l 170 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-TKI 170 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHH
Confidence 322 2333333333333334555 6677788888899999999999998888877655443 555
Q ss_pred HHHHhccCcEEEEEcCCchhhhh
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
..+.+. ++++|++||+.++...
T Consensus 171 ~~~~~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 171 QEHRAK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHc-CCEEEEEeCCchhccc
Confidence 556544 8899999999988755
No 300
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.55 E-value=3.7e-14 Score=156.96 Aligned_cols=145 Identities=22% Similarity=0.214 Sum_probs=99.1
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH---------------hhcCcccccccc-----ccchHHHH-----------
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL---------------AQVGADVPAEIF-----EISPVDRI----------- 1073 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------aq~G~~vPa~~~-----~l~~~d~i----------- 1073 (1288)
.+|++++|+||||+|||||||+|+|+.-. .+.-.|+|+... .+.+.+.+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 46899999999999999999999986421 011234554321 11222222
Q ss_pred --------------HHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1074 --------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1074 --------------~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
+..++..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+.....+. .++..+.++
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT-ELFIELAGA 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHc
Confidence 223333333333344555 4556678888899999999999999999888666554 556666554
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
+.++|++||+++.+..+++ ++.++ .|.++..+
T Consensus 163 -~~tvii~sH~~~~~~~~~d--~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 163 -GTAILMTTHDLAQAMATCD--RVVLL-NGRVIADG 194 (223)
T ss_pred -CCEEEEEeCCHHHHHHhCC--EEEEE-CCEEEeec
Confidence 8899999999999888888 67667 57776554
No 301
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=4.2e-14 Score=160.08 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=105.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+|+||+|||||||+|+|+.-.. ..| .|+|+...
T Consensus 20 ~~il~~isl~i-~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 20 SKAIEGISMDI-YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred eEeecceEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 35789999999 789999999999999999999999864210 012 12333211
Q ss_pred --ccchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 --EISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 --~l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
..++.+.+. ..++.. +.+......++ ++.++++.+++++.+|+++|||||+
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 112222221 111111 11112223445 5666788888889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee-----eEEEEecC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH-----MACQVGNG 1174 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~-----~~~~~~~g 1174 (1288)
+|.|+.....+ +.++..+.+ +.++|++||+++.+..+++ ++.+++ .|.++..|
T Consensus 179 ~~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~i~~~~d--~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 179 SALDPIATMKV-EELIHSLRS--ELTIAIVTHNMQQATRVSD--FTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred ccCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhcC--eEEEEeccCCCCceEEEeC
Confidence 88888755443 456666643 5899999999999999998 788887 37777655
No 302
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.9e-14 Score=160.87 Aligned_cols=157 Identities=17% Similarity=0.075 Sum_probs=107.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----hc-------------------------Ccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----QV-------------------------GADVPAE 1063 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----q~-------------------------G~~vPa~ 1063 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+.-.. .. -.|+|+.
T Consensus 29 ~~vl~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 29 YQALKNINMMV-HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 36899999999 789999999999999999999999864210 01 1244433
Q ss_pred ccc--cchHHHHH----------------------HhcCch----hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1064 IFE--ISPVDRIF----------------------VRMGAK----DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1064 ~~~--l~~~d~i~----------------------~~ig~~----d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
... .++.+.+. ..++.. +.+......++ ++.++++.+.+++.+|+++||||
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 187 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 210 12222221 111111 11112223444 45666778888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|++|.|+.....+ ..++..+.+ ++++|++||+++.+..+++ ++.+++.|.++..|.
T Consensus 188 Pt~gLD~~~~~~l-~~~l~~l~~--~~tiiivth~~~~~~~~~d--~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 188 PTSALDPIATASI-EELISDLKN--KVTILIVTHNMQQAARVSD--YTAYMYMGELIEFGA 243 (265)
T ss_pred CCccCCHHHHHHH-HHHHHHHHh--CCEEEEEecCHHHHHHhCC--EEEEEECCEEEEeCC
Confidence 9888888755544 456666643 5899999999999988888 899999988876653
No 303
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.5e-14 Score=178.42 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=109.1
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------------------hhcCcccccccc------c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------------------AQVGADVPAEIF------E 1066 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------------------aq~G~~vPa~~~------~ 1066 (1288)
.+.++++|.+ ..|++++|+||||||||||||+|+|+.-. .+.-.|+|+... .
T Consensus 262 ~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 262 PSIRDVSFDL-HKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred cccceeeEEE-eCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 4789999999 78999999999999999999999985310 111224444311 1
Q ss_pred cchH---------------------------HHHHHhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1067 ISPV---------------------------DRIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1067 l~~~---------------------------d~i~~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+.+. ..++.+++.. +.......++| ++.++++.+..++.+|.+||||||++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111 1122233332 23344456666 45566777778899999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
|.|+.-...+ +.++..+.+. +.++|++||+++++..+++ ++.+++.|.++.
T Consensus 421 gLD~~~~~~~-~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d--~v~~l~~g~i~~ 471 (491)
T PRK10982 421 GIDVGAKFEI-YQLIAELAKK-DKGIIIISSEMPELLGITD--RILVMSNGLVAG 471 (491)
T ss_pred ccChhHHHHH-HHHHHHHHHC-CCEEEEECCChHHHHhhCC--EEEEEECCEEEE
Confidence 8888865554 4567777654 8899999999999999998 888888887664
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.5e-14 Score=180.07 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=101.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------hhcCccccccc---cccchH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------AQVGADVPAEI---FEISPV--------- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------aq~G~~vPa~~---~~l~~~--------- 1070 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+.-. ..+ .|+|+.. ..+++.
T Consensus 14 ~~il~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~tv~e~l~~~~~~ 91 (530)
T PRK15064 14 KPLFENISVKF-GGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERL-GKLRQDQFAFEEFTVLDTVIMGHTE 91 (530)
T ss_pred cEeEeCCEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCcCCCCcHHHHHHHhhHH
Confidence 46889999999 78999999999999999999999986421 012 2344321 111111
Q ss_pred --------------------------------------------HHHHHhcCchhhHh-hcccchHHH-HHHHHHHHHhC
Q 000778 1071 --------------------------------------------DRIFVRMGAKDHIM-AGQSTFLTE-LSETALMLSSA 1104 (1288)
Q Consensus 1071 --------------------------------------------d~i~~~ig~~d~i~-~~~Stf~~e-~~~~~~il~~a 1104 (1288)
..++..+|..+... ...+++|++ .++++.+..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~ 171 (530)
T PRK15064 92 LWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF 171 (530)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence 12233344433222 234667754 45667777789
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
.+|.+||||||++|.|+.... .+.+.|. +.+++||++||+.+++..+++ +|..++.|.+
T Consensus 172 ~~p~lLlLDEPt~~LD~~~~~----~l~~~l~-~~~~tiiivsHd~~~~~~~~d--~i~~l~~g~i 230 (530)
T PRK15064 172 SNPDILLLDEPTNNLDINTIR----WLEDVLN-ERNSTMIIISHDRHFLNSVCT--HMADLDYGEL 230 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHH----HHHHHHH-hCCCeEEEEeCCHHHHHhhcc--eEEEEeCCEE
Confidence 999999999996666666433 2333343 348899999999999999888 8888887765
No 305
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=173.09 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=116.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc--------------------------cccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--------------------------PAEI-- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v--------------------------Pa~~-- 1064 (1288)
..+.+||+|++ .+|++++|+|++||||||+.|+|+++.-. ..|..+ |-.+
T Consensus 304 ~~Av~~VSf~l-~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 304 VKAVDDVSFDL-REGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred eeeeeeeeeEe-cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 46789999999 89999999999999999999999986632 111100 1000
Q ss_pred cccc----------------------hHHHHHHhcCchhh-HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1065 FEIS----------------------PVDRIFVRMGAKDH-IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1065 ~~l~----------------------~~d~i~~~ig~~d~-i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+.+ .++.++..+|...+ +......|| ++.++++.+.+++.+|.+||+||| |+
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp---~S 458 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEP---VS 458 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCC---cc
Confidence 0111 13344556665543 444556677 577789999999999999999999 55
Q ss_pred hHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+|. ++-...+|..|.++.|.+.||+|||+.++..+|+ +|.+|+.|+++..|.
T Consensus 459 aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d--rv~vm~~G~iVE~G~ 513 (539)
T COG1123 459 ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD--RVAVMYDGRIVEEGP 513 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc--eEEEEECCeEEEeCC
Confidence 5552 2223366777778889999999999999999999 999999999999873
No 306
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=5.1e-14 Score=158.50 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=107.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--H--hhcC-----------------------cccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--L--AQVG-----------------------ADVPAEIF 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--l--aq~G-----------------------~~vPa~~~ 1065 (1288)
..+.++++|++ .+|++++|+||||+|||||||+|+|+.- . ...| .|+|+...
T Consensus 16 ~~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 16 AHILKNVNLDI-PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 36889999999 7899999999999999999999998631 1 1112 23443321
Q ss_pred c--cchHHHHH----------------------HhcCchh----hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1066 E--ISPVDRIF----------------------VRMGAKD----HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1066 ~--l~~~d~i~----------------------~~ig~~d----~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
. .++.+.+. ..++..+ .+......++ ++.++++.+.+++.+|+++|||||+
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 11222221 1111111 1112223344 5666788888889999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+|.|+.....+ ..++..+. + ++++|++||+++.+..+++ ++.+++.|.++..+.
T Consensus 175 ~gLD~~~~~~l-~~~l~~~~-~-~~tiii~sh~~~~~~~~~~--~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 175 SALDPISTTKI-EDLIHKLK-E-DYTIVIVTHNMQQATRVSK--YTSFFLNGEIIESGL 228 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHh-c-CCeEEEEECCHHHHHhhcC--EEEEEECCeEEEeCC
Confidence 99998765544 46666663 3 6899999999999988887 788888888876653
No 307
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.7e-14 Score=182.62 Aligned_cols=149 Identities=19% Similarity=0.131 Sum_probs=100.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------ccccccc-----cccch--------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEI-----FEISP-------- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~-----~~l~~-------- 1069 (1288)
..+++|++|.+ .+|++++|+||||||||||||+|+|+.-. ..| .|+++.. ..+.+
T Consensus 14 ~~~l~~vs~~i-~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~ 91 (638)
T PRK10636 14 RVLLDNATATI-NPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREY 91 (638)
T ss_pred ceeecCcEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHH
Confidence 46889999999 78999999999999999999999995421 111 1222210 00110
Q ss_pred -------------------------------------HHHHHHhcCch-hhHhhcccchHHH-HHHHHHHHHhCCCCcEE
Q 000778 1070 -------------------------------------VDRIFVRMGAK-DHIMAGQSTFLTE-LSETALMLSSATRNSLV 1110 (1288)
Q Consensus 1070 -------------------------------------~d~i~~~ig~~-d~i~~~~Stf~~e-~~~~~~il~~a~~~sLv 1110 (1288)
+..++..+|.. +......++||++ .++++.+..++.+|+||
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lL 171 (638)
T PRK10636 92 RQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLL 171 (638)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEE
Confidence 11123333433 2334455677754 45677777889999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEE
Q 000778 1111 VLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQ 1170 (1288)
Q Consensus 1111 LLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~ 1170 (1288)
||||| |+++|..++.| +.+.| .+.+.++|+||||.+++..+++ +|..++.|.+
T Consensus 172 LLDEP---tn~LD~~~~~~-L~~~L-~~~~~tviivsHd~~~l~~~~d--~i~~L~~G~i 224 (638)
T PRK10636 172 LLDEP---TNHLDLDAVIW-LEKWL-KSYQGTLILISHDRDFLDPIVD--KIIHIEQQSL 224 (638)
T ss_pred EEcCC---CCcCCHHHHHH-HHHHH-HhCCCeEEEEeCCHHHHHHhcC--EEEEEeCCEE
Confidence 99999 55555444433 34444 4457899999999999999888 8888877754
No 308
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.53 E-value=4.2e-14 Score=159.90 Aligned_cols=155 Identities=14% Similarity=0.039 Sum_probs=105.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~l--~~~ 1070 (1288)
..+.++++|.+ .+|++++|+||||+|||||||+|+|+... .+.-.|+|+....+ .+.
T Consensus 34 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~ 112 (257)
T cd03288 34 KPVLKHVKAYI-KPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIR 112 (257)
T ss_pred CcceeEEEEEE-cCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHH
Confidence 36889999999 78999999999999999999999986410 11113444332110 111
Q ss_pred --------------HHHHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 --------------DRIFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 --------------d~i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
...+...+..+.+.. ....++ ++.++++.+.+++.+|+++|||||++|.|+...
T Consensus 113 ~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 113 FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192 (257)
T ss_pred HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 111112222221111 113455 566778888889999999999999999988754
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
. ....++..+. + ++++|++||+++.+.. ++ +|.+++.|.++..+
T Consensus 193 ~-~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d--ri~~l~~G~i~~~g 236 (257)
T cd03288 193 N-ILQKVVMTAF-A-DRTVVTIAHRVSTILD-AD--LVLVLSRGILVECD 236 (257)
T ss_pred H-HHHHHHHHhc-C-CCEEEEEecChHHHHh-CC--EEEEEECCEEEEeC
Confidence 4 3445555553 3 7899999999998875 66 89999999887654
No 309
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=4.3e-14 Score=159.34 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=100.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc----------------------------------c
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA----------------------------------D 1059 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~----------------------------------~ 1059 (1288)
.+..|+++ + .+|++++|+||||+|||||||+|+|+.- ...|. +
T Consensus 15 ~~l~~i~~-i-~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPV-P-REGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCCC-C-CCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 46677874 5 6899999999999999999999998642 11111 1
Q ss_pred cccccccc------------------chHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1060 VPAEIFEI------------------SPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1060 vPa~~~~l------------------~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
+|+..... .....++.++|..+.+.....+++ ++.++++.+..++.+|+++|||||++|.|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD 171 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred ecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 11110000 011223445555554444555666 45566777778899999999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+.....+. .++..+.++ ++++|++||+++++..+++ +|.+++
T Consensus 172 ~~~~~~l~-~~l~~l~~~-~~tIIiiSHd~~~~~~~ad--~i~~l~ 213 (255)
T cd03236 172 IKQRLNAA-RLIRELAED-DNYVLVVEHDLAVLDYLSD--YIHCLY 213 (255)
T ss_pred HHHHHHHH-HHHHHHHhc-CCEEEEEECCHHHHHHhCC--EEEEEC
Confidence 88665554 566667654 7899999999999988887 776664
No 310
>PLN03073 ABC transporter F family; Provisional
Probab=99.53 E-value=1.6e-13 Score=174.48 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=105.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------hcCccccccc-cccc-------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA----------QVGADVPAEI-FEIS------------- 1068 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila----------q~G~~vPa~~-~~l~------------- 1068 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+.-.. .+ .|+|+.. ..+.
T Consensus 522 ~~il~~vsl~i-~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~i-gyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 522 PLLFKNLNFGI-DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRM-AVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CeeEeccEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeE-EEEeccccccCCcchhHHHHHHHhc
Confidence 46899999999 789999999999999999999999864211 11 2344322 0000
Q ss_pred ------hHHHHHHhcCchh-hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1069 ------PVDRIFVRMGAKD-HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1069 ------~~d~i~~~ig~~d-~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
.+..++.++|..+ ......+.+| ++.++++.+..++.+|.+||||||++|.|+.... .+++.|.+. +
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~----~l~~~L~~~-~ 674 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE----ALIQGLVLF-Q 674 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH----HHHHHHHHc-C
Confidence 0122344555543 3445566777 4556677788889999999999997777666433 344555432 4
Q ss_pred cEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1141 CRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
.++|++||+.+++..+++ ++.+++.|.++
T Consensus 675 gtvIivSHd~~~i~~~~d--rv~~l~~G~i~ 703 (718)
T PLN03073 675 GGVLMVSHDEHLISGSVD--ELWVVSEGKVT 703 (718)
T ss_pred CEEEEEECCHHHHHHhCC--EEEEEECCEEE
Confidence 599999999999999888 88888877765
No 311
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.52 E-value=5.1e-14 Score=155.17 Aligned_cols=149 Identities=11% Similarity=0.044 Sum_probs=98.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc--cc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--EI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--~l 1067 (1288)
.+.++++|.+ .+|++++|+||||+||||||++|+|+... .+.-.|+|+... ..
T Consensus 15 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 15 ATLSNINIRI-PTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 5788999998 78999999999999999999999986411 011123443321 11
Q ss_pred chHHHH--------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1068 SPVDRI--------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1068 ~~~d~i--------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
++.+.+ ...++..+.+. .....++ ++.++++.+.+++.+|++||||||++|.|+
T Consensus 94 t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 173 (218)
T cd03290 94 TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173 (218)
T ss_pred cHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence 222222 11222221111 1234555 556677888888999999999999888888
Q ss_pred HHHHHHHHH-HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1122 SDGQAIAES-VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1122 ~Dg~aia~a-ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
.....+... +++.+.+ .+.++|++||+.+.+. .++ ++.+++.
T Consensus 174 ~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d--~i~~l~~ 216 (218)
T cd03290 174 HLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HAD--WIIAMKD 216 (218)
T ss_pred HHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCC--EEEEecC
Confidence 876665543 6666644 4789999999999875 455 6655543
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.52 E-value=3.6e-14 Score=192.92 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=118.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+.+.++++|++ .+|++++|+||||||||||||+|+|+... .+.-.++|+... .+++.
T Consensus 943 k~aL~~lsl~I-~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITF-YENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEE-cCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 56899999999 78999999999999999999999996411 111235555431 12222
Q ss_pred H---------------------HHHHhcCchhhHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1071 D---------------------RIFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1071 d---------------------~i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
+ .++.++|..+......++++++| ++++.+++++.+|++||||||++|.|+.....+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 2 23444555544445566777555 457777888999999999999999999866654
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.+|..+ ++ |.++|++||+++.+..+++ +|.+++.|.++..|+
T Consensus 1101 ~~lL~~l-~~-g~TIIltTHdmdea~~laD--rI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1101 WDLLLKY-RS-GRTIIMSTHHMDEADLLGD--RIAIISQGRLYCSGT 1143 (2272)
T ss_pred HHHHHHH-hC-CCEEEEEECCHHHHHHhCC--EEEEEECCEEEEecC
Confidence 5777777 34 8899999999999999998 999999999987764
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=2.3e-14 Score=179.17 Aligned_cols=149 Identities=17% Similarity=0.055 Sum_probs=101.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------hhcCcccccccc---ccchHHHHHH----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------AQVGADVPAEIF---EISPVDRIFV---- 1075 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------aq~G~~vPa~~~---~l~~~d~i~~---- 1075 (1288)
..+.+|++|++ .+|++++|+||||+|||||||+|+|+... .++ .|||+... .+++.+.+..
T Consensus 20 ~~il~~vs~~i-~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 20 KQILKDISLSF-FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CeeeeCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCCCCCcHHHHHHHhhHH
Confidence 46889999999 78999999999999999999999996521 112 25555431 2233333210
Q ss_pred -----------------------------------------------------hcCchhhHhhcccchHH-HHHHHHHHH
Q 000778 1076 -----------------------------------------------------RMGAKDHIMAGQSTFLT-ELSETALML 1101 (1288)
Q Consensus 1076 -----------------------------------------------------~ig~~d~i~~~~Stf~~-e~~~~~~il 1101 (1288)
++|.. ......+++|+ +.++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~ 176 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 11110 01223455664 556677888
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
.++.+|++||||||++|.|+..... +.+.|. +.+.++|++||+.+++..+++ +|..++.|.++
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~----l~~~L~-~~~~tviiisHd~~~~~~~~d--~i~~l~~g~i~ 239 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAW----LEQFLH-DYPGTVVAVTHDRYFLDNVAG--WILELDRGRGI 239 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHH----HHHHHH-hCCCeEEEEeCCHHHHHhhcC--eEEEEeCCEEE
Confidence 8899999999999966666654332 233332 234699999999999999888 88888877654
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.4e-14 Score=176.83 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------h--hcCcccccccc-----ccchHH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------A--QVGADVPAEIF-----EISPVD------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------a--q~G~~vPa~~~-----~l~~~d------- 1071 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+... . ..-.|+|+... .+++.+
T Consensus 332 ~~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 332 GPLFKNLNLLL-EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred ceeecCcEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 46889999999 78999999999999999999999986421 0 01134554321 122222
Q ss_pred ---------HHHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1072 ---------RIFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1072 ---------~i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
.++.++|.. +......+++|+ +.++++.+..++.+|.++|||||++|.|+.....+ .+.|.+ .+
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~-~~ 485 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL----NMALEK-YE 485 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHHH-CC
Confidence 233344442 334445667774 55567777788999999999999777777754433 333322 35
Q ss_pred cEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1141 CRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
.++|++||+.+++..+++ ++.+++.|.++
T Consensus 486 ~tvi~vsHd~~~~~~~~d--~i~~l~~g~i~ 514 (530)
T PRK15064 486 GTLIFVSHDREFVSSLAT--RIIEITPDGVV 514 (530)
T ss_pred CEEEEEeCCHHHHHHhCC--EEEEEECCeEE
Confidence 699999999999999888 88888888765
No 315
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.51 E-value=6.7e-14 Score=159.91 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=111.7
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------ccccc
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPA 1062 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa 1062 (1288)
.+.|.+++.... ...++++++|.+ .+|++++|+||||+||||||++|+|+.- ...| .|+|+
T Consensus 37 ~~~l~i~nls~~---------~~~vL~~vs~~i-~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~i~yv~q 105 (282)
T cd03291 37 DNNLFFSNLCLV---------GAPVLKNINLKI-EKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRISFSSQ 105 (282)
T ss_pred CCeEEEEEEEEe---------cccceeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEEEEeC
Confidence 345777776542 135889999999 7899999999999999999999998642 1222 24554
Q ss_pred ccc--ccchHHHHH--------------HhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1063 EIF--EISPVDRIF--------------VRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1063 ~~~--~l~~~d~i~--------------~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
... ..++.+.+. ..++..+.+.. ....++ ++.++++.+.+++.+|+++||||
T Consensus 106 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 106 FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred cccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 421 112222221 11222221111 113455 56667788888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
|++|.|+.....+...++..+. . +.++|++||+++.+. .++ ++.+++.|.++..|
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~d--~i~~l~~G~i~~~g 240 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KAD--KILILHEGSSYFYG 240 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hCC--EEEEEECCEEEEEC
Confidence 9888888755544444455553 3 689999999999875 566 78888888765443
No 316
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.51 E-value=4.6e-14 Score=169.28 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=117.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------hhcCcccccccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------AQVGADVPAEIF 1065 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------aq~G~~vPa~~~ 1065 (1288)
.+.+||+|++ .+|++++|+|.+||||||+.++|.++.-. ...-+++|++..
T Consensus 23 ~~v~~vsf~v-~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDVSFEV-EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecceEEe-cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 5889999999 89999999999999999999999875311 011134444421
Q ss_pred -cc----ch----------------------HHHHHHhcCchhhHhh--cccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 000778 1066 -EI----SP----------------------VDRIFVRMGAKDHIMA--GQSTFLTELSE-TALMLSSATRNSLVVLDEL 1115 (1288)
Q Consensus 1066 -~l----~~----------------------~d~i~~~ig~~d~i~~--~~Stf~~e~~~-~~~il~~a~~~sLvLLDEp 1115 (1288)
.+ .+ ...+|..+|..+.... ....||++|++ +..+.+++.+|+|||+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 11 11 1234556666655554 56677876654 6666778999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|.++|..-.. ....+|+.|.++.|+++||+|||++++.++++ +|.+|+.|.+++.|.
T Consensus 182 TTaLDvt~q~-qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aD--rv~Vm~~G~iVE~G~ 238 (539)
T COG1123 182 TTALDVTTQA-QILDLLKDLQRELGMAVLFITHDLGVVAELAD--RVVVMYKGEIVETGP 238 (539)
T ss_pred ccccCHHHHH-HHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcC--eEEEEECCEEEEecC
Confidence 5555554333 34477788888889999999999999999999 999999999998874
No 317
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=4.3e-14 Score=153.11 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=92.9
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC-----------------ccccccc---cccchHHH-
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG-----------------ADVPAEI---FEISPVDR- 1072 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G-----------------~~vPa~~---~~l~~~d~- 1072 (1288)
.+.+ ++|++ .+|++++|+||||+|||||||+|+|+.-. ..| .|+|... ...++.+.
T Consensus 15 ~l~~-vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l 91 (195)
T PRK13541 15 NLFD-LSITF-LPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENL 91 (195)
T ss_pred EEEE-EEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHH
Confidence 3444 89998 78999999999999999999999996311 111 2333321 11122222
Q ss_pred ---------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1073 ---------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1073 ---------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
++..++..+.+....+.++ ++.++++.+.+++.+|+++|||||++|.|+.....+ ..++....
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~ 170 (195)
T PRK13541 92 KFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMKA 170 (195)
T ss_pred HHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHH
Confidence 2333444444444556666 455677888888999999999999888888865443 45555444
Q ss_pred hccCcEEEEEcCCchhhhh
Q 000778 1137 HKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~ 1155 (1288)
+ .+.++|++||+.+.+..
T Consensus 171 ~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 171 N-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred h-CCCEEEEEeCCccccch
Confidence 4 47899999999987665
No 318
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.51 E-value=7.6e-14 Score=154.76 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=97.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHh-hhhhHH--HH---------hhcC-ccccc--------------cc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLR-QVCLAV--IL---------AQVG-ADVPA--------------EI- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr-~i~~i~--il---------aq~G-~~vPa--------------~~- 1064 (1288)
..++++++|++ .+|++++|+||||||||||++ .|.... .+ ...| .++|. ..
T Consensus 8 ~~~l~~vsl~i-~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 8 EHNLKNVDVDI-PRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhccccceeec-CCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 46788999999 899999999999999999962 221100 00 0011 11111 00
Q ss_pred ----c--ccchH-------H------------HHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCC--cEEEEeCC
Q 000778 1065 ----F--EISPV-------D------------RIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRN--SLVVLDEL 1115 (1288)
Q Consensus 1065 ----~--~l~~~-------d------------~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~--sLvLLDEp 1115 (1288)
. .++.+ . ..+.+++..+ .+....+++++ +.++++.+..++.+| +++|||||
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 0 00000 0 0112223322 23444566664 445566667777776 69999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEe------eeEEEEec
Q 000778 1116 GRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC------HMACQVGN 1173 (1288)
Q Consensus 1116 g~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~------~~~~~~~~ 1173 (1288)
++|.|+.....+. .++..+.+. |.++|++||+++++. +++ ++.++ +.|.++..
T Consensus 167 t~gLD~~~~~~l~-~~l~~~~~~-g~tii~itH~~~~~~-~~d--~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 167 SIGLHPRDNDRLI-ETLKRLRDL-GNTVLVVEHDEDTIR-AAD--HVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred ccCCCHHHHHHHH-HHHHHHHhC-CCEEEEEEeCHHHHH-hCC--EEEEeCCCccccCCEEEec
Confidence 9999988766554 556666554 889999999999874 677 88888 77766654
No 319
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=1.4e-13 Score=140.00 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=115.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------H-----------------hhcCcccccccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------L-----------------AQVGADVPAEIF-- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------l-----------------aq~G~~vPa~~~-- 1065 (1288)
-.|+.+++|.+ ..|+.++|+||+||||||||-.++|+-- + .++| ||.+...
T Consensus 23 l~IL~~V~L~v-~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG-fVFQSF~Li 100 (228)
T COG4181 23 LSILKGVELVV-KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG-FVFQSFHLI 100 (228)
T ss_pred eeEeecceEEe-cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee-EEEEeeecc
Confidence 47899999999 7899999999999999999999998431 0 1122 2222110
Q ss_pred ---------c-------------cchHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1066 ---------E-------------ISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1066 ---------~-------------l~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
. .......+.++|..+.+.....+++ +|.++++.+.+.+..|.+++.|||+-..|..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 0 1113346778888888877777777 6888999999999999999999997777777
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.|..|+ .++-.+.++.|.|.+++|||..++..+. +.+.+..|.++.
T Consensus 181 Tg~~ia-DLlF~lnre~G~TlVlVTHD~~LA~Rc~---R~~r~~~G~l~~ 226 (228)
T COG4181 181 TGDKIA-DLLFALNRERGTTLVLVTHDPQLAARCD---RQLRLRSGRLVE 226 (228)
T ss_pred HHHHHH-HHHHHHhhhcCceEEEEeCCHHHHHhhh---heeeeecceecc
Confidence 788887 4555566777999999999999998754 555666666553
No 320
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.4e-13 Score=142.69 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh----cC-----------ccccccccccchH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----VG-----------ADVPAEIFEISPV------- 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq----~G-----------~~vPa~~~~l~~~------- 1070 (1288)
..++.|+++++ .+|++++++||+||||||||+.++|++-..+ ++ ..|.+..+-+++.
T Consensus 18 ~~~le~vsL~i-a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 18 RSALEDVSLTI-ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred hhhhhccceee-cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence 45788999999 8899999999999999999999999764332 11 1122222223322
Q ss_pred -----------------HHHHHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1071 -----------------DRIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1071 -----------------d~i~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
++.+..+|..+.-......+++.|++ +..+.+++.+|.+++||||+...|.+-...+-.-++
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence 23344455555444555667777765 555667889999999999977776665555544455
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+-+ +..|..++++||+.+.+..+++ +++++.-+
T Consensus 177 dlw-~~tgk~~lliTH~ieEAlflat--rLvvlsp~ 209 (259)
T COG4525 177 DLW-QETGKQVLLITHDIEEALFLAT--RLVVLSPG 209 (259)
T ss_pred HHH-HHhCCeEEEEeccHHHHHhhhh--eeEEecCC
Confidence 544 5568999999999999999888 77776543
No 321
>PLN03211 ABC transporter G-25; Provisional
Probab=99.49 E-value=7.8e-14 Score=176.42 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=112.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d 1071 (1288)
+.+++|+++.+ .+|++++|+|||||||||||++|+|..-. .+.-+|||+... .+++.+
T Consensus 81 ~~iL~~vs~~i-~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMA-SPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CeeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 46899999999 78999999999999999999999986421 011245655431 122222
Q ss_pred H------------------------HHHhcCchhhHh-----hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1072 R------------------------IFVRMGAKDHIM-----AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1072 ~------------------------i~~~ig~~d~i~-----~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
. ++..+|..+... .....++ +|.++++.+..++.+|+++|||||++|.|+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 2 222333322110 1123355 566778888889999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.....+. .++..+.++ |.|+|++||+++ .+..+++ ++.+++.|.++..|.
T Consensus 240 ~~~~~l~-~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D--~iilL~~G~iv~~G~ 290 (659)
T PLN03211 240 TAAYRLV-LTLGSLAQK-GKTIVTSMHQPSSRVYQMFD--SVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHHHHH-HHHHHHHhC-CCEEEEEecCCCHHHHHhhc--eEEEecCCcEEEECC
Confidence 8666544 566777654 899999999997 4667777 899999999888775
No 322
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.49 E-value=9.2e-14 Score=162.23 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=97.9
Q ss_pred EEecCCCChhHHHhhhhhHHHH------------------hhcCcccccccc---ccchHHH------------------
Q 000778 1032 LTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF---EISPVDR------------------ 1072 (1288)
Q Consensus 1032 ItGpNgsGKSTlLr~i~~i~il------------------aq~G~~vPa~~~---~l~~~d~------------------ 1072 (1288)
|+||||||||||||+|+|+.-. .+.-.|+|+... .+.+.+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999986421 001124444321 1222222
Q ss_pred ---HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC
Q 000778 1073 ---IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148 (1288)
Q Consensus 1073 ---i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH 1148 (1288)
++..++..+.+.....++| ++.++++.+.+++.+|+++|||||++|.|+.....+ +.++..+.++.+.++|++||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l-~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQM-QLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeC
Confidence 2233333333333445566 455677888889999999999999888888855544 46666666555899999999
Q ss_pred CchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1149 YHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1149 ~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++.+..+++ +|.+++.|.++..++
T Consensus 160 d~~e~~~~~d--~i~vl~~G~i~~~g~ 184 (325)
T TIGR01187 160 DQEEAMTMSD--RIAIMRKGKIAQIGT 184 (325)
T ss_pred CHHHHHHhCC--EEEEEECCEEEEEcC
Confidence 9999988888 899999998876653
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.48 E-value=7.9e-14 Score=174.32 Aligned_cols=150 Identities=16% Similarity=0.038 Sum_probs=99.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh---------hcCcccccccc---ccchHHHHHH-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------QVGADVPAEIF---EISPVDRIFV----- 1075 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------q~G~~vPa~~~---~l~~~d~i~~----- 1075 (1288)
..+.+|++|.+ .+|++++|+||||||||||||+|+|+.-.. +.-.|||+... .+++.+.+..
T Consensus 18 ~~il~~is~~i-~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~ 96 (552)
T TIGR03719 18 KEILKDISLSF-FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEI 96 (552)
T ss_pred CeeecCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHH
Confidence 46889999999 789999999999999999999999864210 11135555421 2233333210
Q ss_pred ----------------------------------------------------hcCchhhHhhcccchH-HHHHHHHHHHH
Q 000778 1076 ----------------------------------------------------RMGAKDHIMAGQSTFL-TELSETALMLS 1102 (1288)
Q Consensus 1076 ----------------------------------------------------~ig~~d~i~~~~Stf~-~e~~~~~~il~ 1102 (1288)
.+|.. ......+++| ++.++++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~a 175 (552)
T TIGR03719 97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 00000 0112334566 45566777888
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
++.+|++||||||++|.|+.... .+.+.|. +.++++|++||+.+++..+++ +|..++.|.++
T Consensus 176 l~~~p~lLLLDEPt~~LD~~~~~----~l~~~L~-~~~~tvIiisHd~~~~~~~~d--~v~~l~~g~i~ 237 (552)
T TIGR03719 176 LLSKPDMLLLDEPTNHLDAESVA----WLEQHLQ-EYPGTVVAVTHDRYFLDNVAG--WILELDRGRGI 237 (552)
T ss_pred HhcCCCEEEEcCCCCCCChHHHH----HHHHHHH-hCCCeEEEEeCCHHHHHhhcC--eEEEEECCEEE
Confidence 89999999999996666655433 2333333 335699999999999998888 88888777543
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=99.48 E-value=1.5e-13 Score=171.73 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=104.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc----------------------------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---------------------------------- 1058 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~---------------------------------- 1058 (1288)
.|++.+++ .+ .+|++++|+||||+|||||||+|+|+... ..|.
T Consensus 87 ~~~L~~l~-~i-~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IP-KEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cC-CCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 47899998 66 78999999999999999999999985321 1111
Q ss_pred ccccccccc------------------chHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1059 DVPAEIFEI------------------SPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1059 ~vPa~~~~l------------------~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
+.|+..... ..++.++..++.........+++| +|+++++.+..++.+|+++|||||++|.
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L 243 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL 243 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 111110000 012234455566555556667777 4556677778889999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
|+.....+. .++..+.+ +.++|++||+++++..+++ +|.+++.
T Consensus 244 D~~~~~~l~-~~i~~l~~--g~tvIivsHd~~~l~~~~D--~v~vl~~ 286 (590)
T PRK13409 244 DIRQRLNVA-RLIRELAE--GKYVLVVEHDLAVLDYLAD--NVHIAYG 286 (590)
T ss_pred CHHHHHHHH-HHHHHHHC--CCEEEEEeCCHHHHHHhCC--EEEEEeC
Confidence 887665544 56677754 8899999999999998888 6666643
No 325
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.48 E-value=8.4e-14 Score=176.57 Aligned_cols=148 Identities=21% Similarity=0.200 Sum_probs=96.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------ccccccc---cccchHHH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEI---FEISPVDR------- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~---~~l~~~d~------- 1072 (1288)
..+++|++|.+ .+|++++|+||||||||||||+|+|+... ..| .++|+.. ....+++.
T Consensus 16 ~~il~~is~~i-~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~ 93 (635)
T PRK11147 16 APLLDNAELHI-EDNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93 (635)
T ss_pred ceeEeCcEEEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHH
Confidence 46889999999 78999999999999999999999996421 111 1222211 00011110
Q ss_pred ------------------------------------------------HHHhcCchhhHhhcccchHH-HHHHHHHHHHh
Q 000778 1073 ------------------------------------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSS 1103 (1288)
Q Consensus 1073 ------------------------------------------------i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~ 1103 (1288)
++..+|.. .....++||+ +.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 94 QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHH
Confidence 11111111 0123456664 55677888888
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
+.+|+||||||| |+++|..++. .+.+.| .+.+.++|+|||+.+++..+++ +|..++.|.++
T Consensus 172 ~~~P~lLLLDEP---t~~LD~~~~~-~L~~~L-~~~~~tvlivsHd~~~l~~~~d--~i~~L~~G~i~ 232 (635)
T PRK11147 172 VSNPDVLLLDEP---TNHLDIETIE-WLEGFL-KTFQGSIIFISHDRSFIRNMAT--RIVDLDRGKLV 232 (635)
T ss_pred hcCCCEEEEcCC---CCccCHHHHH-HHHHHH-HhCCCEEEEEeCCHHHHHHhcC--eEEEEECCEEE
Confidence 999999999999 5555544433 233433 3345799999999999999888 88888777543
No 326
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.2e-13 Score=150.39 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=118.8
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------HhhcCccccccccccc---------------
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------LAQVGADVPAEIFEIS--------------- 1068 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------laq~G~~vPa~~~~l~--------------- 1068 (1288)
+++|.. ....+.+|-|++|+|||||+++|+|+.- -++.|.++|.+.-+++
T Consensus 16 ~a~~~~-p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTL-PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccC-CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 566665 3337999999999999999999999652 2445556665443332
Q ss_pred -------------hHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 000778 1069 -------------PVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEH 1134 (1288)
Q Consensus 1069 -------------~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~ 1134 (1288)
.||++..-+|.+.-+.+..++++ +|.++++.-.++.+.|.|+|||||.+..|..--..+ .-.+|.
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylER 173 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLER 173 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHH
Confidence 35666667777777777778887 688889988999999999999999444443323333 367888
Q ss_pred HHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1135 FVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1135 l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|.++.+..++++||-++.+..+++ +|+++..|.+...|.
T Consensus 174 L~~e~~IPIlYVSHS~~Ev~RLAd--~vV~le~GkV~A~g~ 212 (352)
T COG4148 174 LRDEINIPILYVSHSLDEVLRLAD--RVVVLENGKVKASGP 212 (352)
T ss_pred HHHhcCCCEEEEecCHHHHHhhhh--eEEEecCCeEEecCc
Confidence 988899999999999999999999 999999999987763
No 327
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.47 E-value=9.4e-13 Score=165.86 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=107.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+|+||||||||+|.+.|+. -+.+.-.+||++.. .-++.
T Consensus 486 ~~vL~~isL~I-~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 486 PPVLEDLSLEI-PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred cchhhceeEEe-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 47899999999 899999999999999999999999853 12333346777642 11122
Q ss_pred H------------HHH---HhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 D------------RIF---VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d------------~i~---~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
| ++. ..-|+.+.+. .+-+.+| ++.++++.++++..+|++||||||+++.|+..
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s 644 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence 2 222 1224444444 2234455 55667888888999999999999944444442
Q ss_pred HHHHHHHHHHHHHhc-cCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHK-VQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~-~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
-. .|.+.|.+- .|+|+|++||.+..... ++ +|++++.|+++.+|+
T Consensus 645 E~----~I~~~L~~~~~~~T~I~IaHRl~ti~~-ad--rIiVl~~Gkiv~~gs 690 (709)
T COG2274 645 EA----IILQNLLQILQGRTVIIIAHRLSTIRS-AD--RIIVLDQGKIVEQGS 690 (709)
T ss_pred HH----HHHHHHHHHhcCCeEEEEEccchHhhh-cc--EEEEccCCceeccCC
Confidence 22 233333321 36999999999988766 44 899999999999885
No 328
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.3e-14 Score=164.62 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=105.4
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--HH-h---hcCcccccccc----ccc------------
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--IL-A---QVGADVPAEIF----EIS------------ 1068 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--il-a---q~G~~vPa~~~----~l~------------ 1068 (1288)
+++.++++.+++. ..|+..+|+|+||+|||||||+|+--. ++ . -.|+++++... .+.
T Consensus 91 G~k~LL~~a~L~L-~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~ 169 (582)
T KOG0062|consen 91 GGKILLNKANLTL-SRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELL 169 (582)
T ss_pred cchhhhcCCceee-ecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhh
Confidence 4678899999998 789999999999999999999999611 11 1 12666665321 111
Q ss_pred -------hHHHHHHhcCch-hhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000778 1069 -------PVDRIFVRMGAK-DHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV 1139 (1288)
Q Consensus 1069 -------~~d~i~~~ig~~-d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~ 1139 (1288)
+.+.++..+|-. +-+.+...+|+++.+ +++.+.++..+|+||||||| |+++|..+++| +-+|| ...
T Consensus 170 ~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhLDv~av~W-Le~yL-~t~ 244 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHLDVVAVAW-LENYL-QTW 244 (582)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccchhHHHHH-HHHHH-hhC
Confidence 122233344433 334455677887764 57777888899999999999 99999999998 44455 455
Q ss_pred CcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1140 QCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1140 ~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+.|+|+|+||..+....+. .|+.+|
T Consensus 245 ~~T~liVSHDr~FLn~V~t--dIIH~~ 269 (582)
T KOG0062|consen 245 KITSLIVSHDRNFLNTVCT--DIIHLE 269 (582)
T ss_pred CceEEEEeccHHHHHHHHH--HHHHHh
Confidence 7899999999998877765 444444
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.46 E-value=1.4e-13 Score=172.20 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=102.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------hh--cCccccccc----cccchHHH-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------AQ--VGADVPAEI----FEISPVDR------- 1072 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------aq--~G~~vPa~~----~~l~~~d~------- 1072 (1288)
..+.+|++|++ .+|++++|+||||||||||||+|+|+... .. .-.|+|+.. ..+++.+.
T Consensus 337 ~~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 337 RLLIDDLSFSL-PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred eeeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccc
Confidence 46899999999 78999999999999999999999986421 10 013555542 11222222
Q ss_pred ------------HHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1073 ------------IFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1073 ------------i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
++.++|... ......+++|+ +.++++.++.++.+|.|+|||||++|.|+.....+. .+|..+
T Consensus 416 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--- 491 (556)
T PRK11819 416 IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE-EALLEF--- 491 (556)
T ss_pred ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---
Confidence 233444432 23444567774 555677788889999999999998888877555443 333333
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++|++||+.+++..+++ +|.+++.
T Consensus 492 -~~tvi~vtHd~~~~~~~~d--~i~~l~~ 517 (556)
T PRK11819 492 -PGCAVVISHDRWFLDRIAT--HILAFEG 517 (556)
T ss_pred -CCeEEEEECCHHHHHHhCC--EEEEEEC
Confidence 3489999999999999888 7777664
No 330
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.6e-13 Score=140.65 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=86.1
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-------------------cCcc---ccccccccch
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-------------------VGAD---VPAEIFEISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-------------------~G~~---vPa~~~~l~~ 1069 (1288)
...+..+++|.+ ..|+++.|+||||+|||||||+|+|+.-... .-.| -|+-...++.
T Consensus 14 e~~lf~~L~f~l-~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTL-NAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEE-cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 468889999998 7899999999999999999999999652110 0000 1111222333
Q ss_pred HHHH------------------HHhcCchhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1070 VDRI------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1070 ~d~i------------------~~~ig~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+..+ +..+|..+........+|.++++ ++.+.-.+..++|.|||||+.+.|.. +.++..+
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~-g~a~l~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH-HHHHHHH
Confidence 2221 22333333333344556655555 55555568999999999997776665 4433334
Q ss_pred HHHHHHhccCcEEEEEcCCch
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~ 1151 (1288)
++..-+. .|..||++||..-
T Consensus 172 l~~~H~~-~GGiVllttHq~l 191 (209)
T COG4133 172 LMAAHAA-QGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHhc-CCCEEEEecCCcc
Confidence 4433333 3788999999854
No 331
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=4.5e-13 Score=141.24 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=110.0
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------------hcCcc---ccccc-----cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-----------------QVGAD---VPAEI-----FE 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-----------------q~G~~---vPa~~-----~~ 1066 (1288)
.+.++++++|++ ..|+|+.|+|.||+|||||++.|+|-..+- +...+ |.+.. ..
T Consensus 18 ek~~l~~~sL~I-~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEI-AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceee-cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 368999999999 889999999999999999999999844220 00000 00000 01
Q ss_pred cchHH---------------------------HHHHh--cCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1067 ISPVD---------------------------RIFVR--MGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1067 l~~~d---------------------------~i~~~--ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
+.+.. .-+++ +|.+..+.....-|++ +.+-++.+++.+.+|.+++|||-+
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 11111 11111 2334444444555664 444567777889999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1117 RGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1117 ~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
+..||.-...+ ...-+.+.++.+.|++++||.++.+..+.+ +.+++|.|.++-+
T Consensus 177 AALDPkta~~v-m~lT~kiV~~~klTtlMVTHnm~~Al~yG~--RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFV-MELTAKIVEEHKLTTLMVTHNMEDALDYGN--RLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHH-HHHHHHHHHhcCCceEEEeccHHHHHhhCC--eEEEEeCCeEEEE
Confidence 88888755544 355556667778999999999999999888 9999999988754
No 332
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.9e-13 Score=157.26 Aligned_cols=222 Identities=19% Similarity=0.172 Sum_probs=135.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccCCCCcccccc
Q 000778 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018 (1288)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~nd 1018 (1288)
+++.-+++-...|.....-.+..|.+.+|-..-......-..+... ..+.+++. ..|--+.. ..++.+++|
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~-----~~~~~ei~-~~~l~~~y---~~g~~~l~~ 339 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA-----NEPPIEIS-LENLSFRY---PDGKPALSD 339 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc-----cCCCceee-ecceEEec---CCCCcccCC
Confidence 3344445555556666677888888887754322110100011111 11233443 11222211 134589999
Q ss_pred cccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccccc--ch-------
Q 000778 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFEI--SP------- 1069 (1288)
Q Consensus 1019 i~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~l--~~------- 1069 (1288)
++|++ .+|+.++|+|+||||||||+..|+|..-. -+.-++||+..--+ ++
T Consensus 340 l~~t~-~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~ 418 (559)
T COG4988 340 LNLTI-KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA 418 (559)
T ss_pred ceeEe-cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhcc
Confidence 99999 88999999999999999999999985410 11123444332100 01
Q ss_pred --------HHHHHHhcCchhhHh----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 000778 1070 --------VDRIFVRMGAKDHIM----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAES 1130 (1288)
Q Consensus 1070 --------~d~i~~~ig~~d~i~----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~a 1130 (1288)
+.+...+.|+.+-+. .+-+.+| ++.+|++.++++..+++|+|+||||++.|...-. +...
T Consensus 419 ~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~-~i~~ 497 (559)
T COG4988 419 RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ-IILQ 497 (559)
T ss_pred CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHH-HHHH
Confidence 112233333333333 3333444 6788999999999999999999996666665444 3445
Q ss_pred HHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1131 VLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1131 ile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.+.++.+ +.|+|++||.++.+..+ | +|+++..|+++..|.+
T Consensus 498 ~l~~l~~--~ktvl~itHrl~~~~~~-D--~I~vld~G~l~~~g~~ 538 (559)
T COG4988 498 ALQELAK--QKTVLVITHRLEDAADA-D--RIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHh--CCeEEEEEcChHHHhcC-C--EEEEecCCceeccCCH
Confidence 5555644 47999999999887664 3 7999999999988753
No 333
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=2.1e-13 Score=159.40 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=112.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------hhcCccccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------AQVGADVPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------aq~G~~vPa~~ 1064 (1288)
-...++|+|++ .+|++.+|+|.||+||||||+++.|+.-. .|.-..||.-.
T Consensus 17 ~~And~V~l~v-~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 17 VVANDDVSLSV-KKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred EEecCceeeee-cCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 35667899999 89999999999999999999999986521 12222222211
Q ss_pred c----ccc----------------hHHHHHHhcCchhhHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHH
Q 000778 1065 F----EIS----------------PVDRIFVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1065 ~----~l~----------------~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il-~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
. -++ -+..+..++|..=+.....+.+++.+++...|+ .+..++.||||||||+=..|.+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0 000 012233444444444445566665555555555 4689999999999999999998
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
...+. .++..|.+. |++|||+||-+..+..+++ ++.++..|..++.
T Consensus 176 ~~~lf-~~l~~l~~~-G~tIi~ITHKL~Ev~~iaD--rvTVLR~Gkvvgt 221 (501)
T COG3845 176 ADELF-EILRRLAAE-GKTIIFITHKLKEVMAIAD--RVTVLRRGKVVGT 221 (501)
T ss_pred HHHHH-HHHHHHHHC-CCEEEEEeccHHHHHHhhC--eeEEEeCCeEEee
Confidence 88765 678888765 9999999999999999999 9999998877643
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.46 E-value=1.6e-13 Score=171.63 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=102.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------hh--cCcccccccc----ccchHH--------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------AQ--VGADVPAEIF----EISPVD-------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------aq--~G~~vPa~~~----~l~~~d-------- 1071 (1288)
..+.++++|.+ .+|++++|+||||||||||||+|+|+... .. .-.|+|+... .+++.+
T Consensus 335 ~~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 335 KLLIDDLSFKL-PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence 46899999999 78999999999999999999999986421 10 0124554321 112222
Q ss_pred -----------HHHHhcCchh-hHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 000778 1072 -----------RIFVRMGAKD-HIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK 1138 (1288)
Q Consensus 1072 -----------~i~~~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~ 1138 (1288)
.++.++|..+ ......+++|+ +.++++.++.++.+|+++|||||++|.|+.....+. .++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC---
Confidence 2334455432 23445567774 555677788889999999999998888877544433 333333
Q ss_pred cCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1139 VQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1139 ~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+.++|++||+.+++..+++ +|.+++.
T Consensus 490 -~~~viivsHd~~~~~~~~d--~i~~l~~ 515 (552)
T TIGR03719 490 -AGCAVVISHDRWFLDRIAT--HILAFEG 515 (552)
T ss_pred -CCeEEEEeCCHHHHHHhCC--EEEEEEC
Confidence 3489999999999998888 7777764
No 335
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.43 E-value=2.5e-12 Score=160.72 Aligned_cols=172 Identities=18% Similarity=0.121 Sum_probs=113.7
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------- 1053 (1288)
.+.+++....+-. .+..+++|++|++ .+|+.++|+||||||||||++.++|..-.
T Consensus 316 ~i~~~~v~~~y~~-----~~~~~l~~~~~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG-----GKKPTLRGISFRL-QAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 4667665433211 1247899999999 78999999999999999999999985411
Q ss_pred -hhcCccccccccc--cchHHHHH---------------HhcCchhhHh-----------hcccchH-HHHHHHHHHHHh
Q 000778 1054 -AQVGADVPAEIFE--ISPVDRIF---------------VRMGAKDHIM-----------AGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1054 -aq~G~~vPa~~~~--l~~~d~i~---------------~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~ 1103 (1288)
.+.-.+||++..- -++.+.+. ...+..+.+. .+..+++ +|.++++.+.++
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 1122456655311 12223321 1112222111 1223444 677888999999
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.+|+++|||||++|.|+.....+. ..+..+.. .++|+|++||..+... .++ +|.+++.|.++..|+
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~-~~~tvi~ith~~~~~~-~~d--~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALA-NAIKALKA-RGITVVVITHRPSLLG-CVD--KILVLQDGRIARFGE 536 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHH-HHHHHHhh-CCCEEEEEeCCHHHHH-hCC--EEEEEECCEEEeeCC
Confidence 9999999999997777776544443 34444432 3689999999998764 466 889999998887664
No 336
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.43 E-value=2.5e-12 Score=165.16 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=115.7
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------- 1052 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------- 1052 (1288)
.|.+++...-+-. .+..+++|++|++ .+|+.++|+||||||||||+|.|+|+.-
T Consensus 451 ~I~~~nvsf~Y~~-----~~~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----DGPLILDDVSLQI-EPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC-----CCccceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH
Confidence 3666655432211 1357999999999 8999999999999999999999998541
Q ss_pred HhhcCccccccccc--cchHHHH--------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhC
Q 000778 1053 LAQVGADVPAEIFE--ISPVDRI--------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSA 1104 (1288)
Q Consensus 1053 laq~G~~vPa~~~~--l~~~d~i--------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a 1104 (1288)
+.+.-++||++..- -++.+.| ....|..+.+.. +-..++ +|.++++.+++++
T Consensus 525 lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 12233567766421 1122222 223344443321 123455 6778899999999
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+|+++|||||+++.|+..-. .+.+.|.+ .++|+|++||.++.... +| +|.+++.|.++..|+
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~----~i~~~L~~-~~~T~IiItHr~~~i~~-~D--~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQA----IVSESLER-LKVTRIVIAHRLSTIRN-AD--RIYVLDAGRVVQQGT 667 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHH----HHHHHHHH-hCCeEEEEecChHHHHc-CC--EEEEEECCEEEEECC
Confidence 999999999996666665433 34455543 36899999999988765 55 899999999888764
No 337
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.1e-12 Score=131.89 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=109.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCc-----------ccccccc----------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-----------DVPAEIF---------------- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~-----------~vPa~~~---------------- 1065 (1288)
..++-||+|+. ..|+.+++.||+|+|||||||.+.++-. +..|- -.|.+.+
T Consensus 15 ~q~lfdi~l~~-~~getlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 15 HQALFDITLDC-PEGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred chheeeeeecC-CCCCEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 46788999998 7899999999999999999999987542 22221 1122110
Q ss_pred ---ccchHH----------------------HHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1066 ---EISPVD----------------------RIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1066 ---~l~~~d----------------------~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.+.+.. .++.|+...+......-.++ ++.++++.+.+++.+|.++|+|||++..
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaal 172 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccccc
Confidence 011111 12222222222222222223 4556788888899999999999998877
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
||.-. +....|++.|.. .|.|-+++||..+.+...+. +|+.|..|.+++.|+
T Consensus 173 dpeit-aqvv~iikel~~-tgitqvivthev~va~k~as--~vvyme~g~ive~g~ 224 (242)
T COG4161 173 DPEIT-AQIVSIIKELAE-TGITQVIVTHEVEVARKTAS--RVVYMENGHIVEQGD 224 (242)
T ss_pred CHHHH-HHHHHHHHHHHh-cCceEEEEEeehhHHHhhhh--heEeeecCeeEeecc
Confidence 77643 344588898865 59999999999999999888 899999999998875
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.42 E-value=4e-13 Score=169.77 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=115.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc---ccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF---EIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~---~l~ 1068 (1288)
.+.+++|+++.+ .+|++++|+||||+||||||++|+|..-. .+.-+|||++.. .++
T Consensus 37 ~~~iL~~vs~~i-~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVA-KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 467999999999 89999999999999999999999985321 111245665431 122
Q ss_pred h------------------------HHHHHHhcCchhhHhhcc------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCC
Q 000778 1069 P------------------------VDRIFVRMGAKDHIMAGQ------STFL-TELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1069 ~------------------------~d~i~~~ig~~d~i~~~~------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~ 1117 (1288)
+ ++.++..+|..+...... ..++ +|.++++.+.+++.+|++++||||++
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 2 233344444433211111 1344 67788899999999999999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
|.|+.....+. .+++.++++ |.|+|++||++. .+...++ ++.+++.|.++..|..
T Consensus 196 gLD~~~~~~l~-~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D--~i~ll~~G~~v~~G~~ 251 (617)
T TIGR00955 196 GLDSFMAYSVV-QVLKGLAQK-GKTIICTIHQPSSELFELFD--KIILMAEGRVAYLGSP 251 (617)
T ss_pred chhHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCCHHHHHHhc--eEEEeeCCeEEEECCH
Confidence 88888766554 566677654 899999999985 5566777 8999999999988753
No 339
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=7.7e-13 Score=134.51 Aligned_cols=157 Identities=21% Similarity=0.200 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC------------------------------ccc--
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG------------------------------ADV-- 1060 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G------------------------------~~v-- 1060 (1288)
..-..||+|.. .+|++++|+|.+||||||||++|.+-. +.+.| .||
T Consensus 19 ~~gc~~vsF~l-~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 19 GKGCRDVSFDL-YPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred CcCccccceee-cCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 34567899998 899999999999999999999998622 11111 122
Q ss_pred -ccccccc------chHHHH------------------HHhcCc-hhhHhhcccchHHHHHHHHHH-HHhCCCCcEEEEe
Q 000778 1061 -PAEIFEI------SPVDRI------------------FVRMGA-KDHIMAGQSTFLTELSETALM-LSSATRNSLVVLD 1113 (1288)
Q Consensus 1061 -Pa~~~~l------~~~d~i------------------~~~ig~-~d~i~~~~Stf~~e~~~~~~i-l~~a~~~sLvLLD 1113 (1288)
|+...++ .+-.++ +.++.. .+.+..-..+|++.|++...| ..+.+.|.||+||
T Consensus 97 nP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMD 176 (258)
T COG4107 97 NPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176 (258)
T ss_pred CccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEec
Confidence 2111000 011111 111111 123344467999999875544 5568999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
||+-|.+.. .++....++.-|..+.+..++++|||+..+..+++ +..+|..|.+++.|
T Consensus 177 EPTGGLDVS-VQARLLDllrgLv~~l~la~viVTHDl~VarLla~--rlmvmk~g~vve~G 234 (258)
T COG4107 177 EPTGGLDVS-VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAD--RLMVMKQGQVVESG 234 (258)
T ss_pred CCCCCcchh-hHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhh--cceeecCCCEeccc
Confidence 997666655 44445578888888889999999999999999998 88899999888776
No 340
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.42 E-value=1.3e-12 Score=153.12 Aligned_cols=211 Identities=19% Similarity=0.251 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEE-----ecCCCCcccccc
Q 000778 935 SILQRLIGQFCE-HHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISA-----KSLGHPVLRSDS 1008 (1288)
Q Consensus 935 ~il~~l~~~~~~-~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i-----~~~rHP~l~~~~ 1008 (1288)
.....++.++.. +...-+++....-.+|-+..-...- .| +. ..++.+ ...-||++...+
T Consensus 330 ~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~e--------k~-~~------~k~l~~~f~~vg~~p~pvi~~~n 394 (614)
T KOG0927|consen 330 AHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTE--------KV-VG------EKVLSFRFPEVGKIPPPVIMVQN 394 (614)
T ss_pred HHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccc--------cc-cC------CceEEEEcccccCCCCCeEEEec
Confidence 345666666654 3344567777777777665321111 11 10 011121 112366665544
Q ss_pred CCC----CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcccccccccc-----------------
Q 000778 1009 LGK----GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI----------------- 1067 (1288)
Q Consensus 1009 l~~----~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l----------------- 1067 (1288)
++- +..+.++++|++ +.+..++++||||+|||||||++.+.. ...+|...|.....+
T Consensus 395 v~F~y~~~~~iy~~l~fgi-d~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 395 VSFGYSDNPMIYKKLNFGI-DLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred cccCCCCcchhhhhhhccc-CcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhcCcchhH
Confidence 432 225889999998 678899999999999999999999743 233343333222222
Q ss_pred --------------chHHHHHHhcCch-hhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1068 --------------SPVDRIFVRMGAK-DHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1068 --------------~~~d~i~~~ig~~-d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
..+..|+-|+|.. +......++++.+++ ++..+......|.||||||| |+++|...+- ++
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP---tnhLDi~tid-~l 548 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP---TNHLDIETID-AL 548 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC---CcCCCchhHH-HH
Confidence 2234456677765 555566777885554 56666667899999999999 5555543332 33
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
-++| +++..++|++|||..++..+++ .|..+..++
T Consensus 549 aeai-Ne~~Ggvv~vSHDfrlI~qVae--Ei~~c~~~~ 583 (614)
T KOG0927|consen 549 AEAI-NEFPGGVVLVSHDFRLISQVAE--EIWVCENGT 583 (614)
T ss_pred HHHH-hccCCceeeeechhhHHHHHHH--HhHhhccCc
Confidence 3444 4567789999999999988877 554444443
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=99.41 E-value=5.1e-13 Score=170.04 Aligned_cols=151 Identities=18% Similarity=0.114 Sum_probs=97.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--HhhcC--ccccccc--cccch-----------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--LAQVG--ADVPAEI--FEISP----------------- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--laq~G--~~vPa~~--~~l~~----------------- 1069 (1288)
..+++|++|++ ..|++++|+||||+|||||||+|++..+ ....| .++++.. ..+..
T Consensus 190 ~~ll~~isl~i-~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 190 RDLIVDASVTL-AFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred CEEEECCEEEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 46899999999 7899999999999999999999987421 01001 0111110 00000
Q ss_pred ----H---------------------------------------------------HHHHHhcCch-hhHhhcccchHH-
Q 000778 1070 ----V---------------------------------------------------DRIFVRMGAK-DHIMAGQSTFLT- 1092 (1288)
Q Consensus 1070 ----~---------------------------------------------------d~i~~~ig~~-d~i~~~~Stf~~- 1092 (1288)
+ ..++..+|.. +.......++|+
T Consensus 269 ~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG 348 (718)
T PLN03073 269 EAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGG 348 (718)
T ss_pred HHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHH
Confidence 0 0111122221 112334566775
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEE
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQV 1171 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~ 1171 (1288)
+.++++.+..++.+|.|||||||+.|.|+. ++. .+.+.| ++.+.++|++||+.+++..+++ +|..++.|.+.
T Consensus 349 ~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~---~~~-~l~~~L-~~~~~tviivsHd~~~l~~~~d--~i~~l~~g~i~ 420 (718)
T PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLDLH---AVL-WLETYL-LKWPKTFIVVSHAREFLNTVVT--DILHLHGQKLV 420 (718)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHH---HHH-HHHHHH-HHcCCEEEEEECCHHHHHHhCC--EEEEEECCEEE
Confidence 445677777789999999999995555444 433 344444 3457899999999999999888 88888877653
No 342
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.41 E-value=3.3e-12 Score=161.33 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=109.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..+.+|++|++ .+|+.++|+|+||||||||+|.|+++.- +.+.-++||++..-+ ++.
T Consensus 354 ~~il~~i~l~i-~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 354 NLVLQNINLSV-PSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (592)
T ss_pred CceeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence 46899999999 8999999999999999999999998542 122335677664211 122
Q ss_pred HH--------------HHHhcCchhhHhh---cc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 DR--------------IFVRMGAKDHIMA---GQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~~---~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+. .....|..+.+.. |. ..++ +|.++++.+++++.+|+++|||||+++.|+...
T Consensus 433 ~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 433 ANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred HHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 22 2333444443322 22 2344 688889999999999999999999777776654
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+. ..+..+. .++|+|++||.++.... +| +|.+++.|.++..|+
T Consensus 513 ~~i~-~~l~~~~--~~~tvIivtHr~~~l~~-~D--~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 513 QAIQ-QALAAVR--EHTTLVVIAHRLSTIVE-AD--TILVLHRGQAVEQGT 557 (592)
T ss_pred HHHH-HHHHHHh--CCCEEEEEecchHHHHh-CC--EEEEEECCEEEEEcC
Confidence 4443 3333332 26899999999987765 55 888999998887664
No 343
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.41 E-value=1e-12 Score=166.83 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=113.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------------hhcCcccccccc---
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF--- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------------aq~G~~vPa~~~--- 1065 (1288)
..++++++|++ .+|++++|+||||+|||||||+|+|+... .+...|+|+...
T Consensus 21 ~~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDI-YAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCC
Confidence 35899999999 78999999999999999999999986411 112235554331
Q ss_pred ccchHHH---------------------HHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1066 EISPVDR---------------------IFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1066 ~l~~~d~---------------------i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
.+.+.+. ++..+|..+.+......++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 1122221 2333444444444556666 45566777888899999999999999988886
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
...+ ..+++++.++ +.++|++||+++++. .++ ++..++.|+++..|..
T Consensus 180 ~~~l-~~ll~~l~~~-g~tilivsH~~~~~~-~~d--~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 180 GEEV-MAILHQLRDR-GHTVIIVTHDPQVAA-QAE--RVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHH-HHHHHHHHhc-CCEEEEECCCHHHHH-hCC--EEEEEECCEEEeecCc
Confidence 5544 3666777553 889999999999886 466 8999999999987754
No 344
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.40 E-value=5.1e-12 Score=159.51 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=107.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|.+ .+|+.++|+|+||+|||||+|.|+|+.- +.+.-+|||++.. .-++.
T Consensus 348 ~~iL~~inl~i-~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 348 RQGVEDVSFEA-KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426 (588)
T ss_pred CceecceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence 46899999999 8899999999999999999999998542 1233356776541 11222
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....+..+.+. .+-..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222 22223332221 1222355 68888999999999999999999988887775
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. ..+..+. .++|+|++||+.+.... +| +|..++.|.++..|
T Consensus 507 ~~~i~-~~l~~~~--~~~tvIiitHr~~~~~~-~D--~ii~l~~G~i~~~g 551 (588)
T PRK13657 507 EAKVK-AALDELM--KGRTTFIIAHRLSTVRN-AD--RILVFDNGRVVESG 551 (588)
T ss_pred HHHHH-HHHHHHh--cCCEEEEEEecHHHHHh-CC--EEEEEECCEEEEeC
Confidence 55443 3333332 26899999999987754 55 88888888777654
No 345
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.40 E-value=1.2e-12 Score=165.38 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=108.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||+|||||||++.|+++. . .+.-++||++.. .-++.
T Consensus 363 ~~vL~~i~l~i-~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 363 KTLAGPLNFTL-PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 47899999999 899999999999999999999999865 2 112246666531 11222
Q ss_pred HHH---------------HHhcCchhhHhh---cc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA---GQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~---~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....++.+.+.. |. ..+| +|.++++.+++++.+|+++|||||+++.|+..
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222 112233332221 22 2344 67888999999999999999999977777665
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+.. .+..+. .+.|+|++||.++.... +| +|.+++.|.+++.|+
T Consensus 521 e~~i~~-~l~~~~--~~~TvIiItHrl~~i~~-aD--~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 521 EQLVMQ-ALNAAS--RRQTTLMVTHQLEDLAQ-WD--QIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHH-HHHHHh--CCCEEEEEecChHHHHh-CC--EEEEEeCCeEeecCC
Confidence 554443 334442 36899999999987765 55 889999888887664
No 346
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.40 E-value=6.8e-12 Score=158.02 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=106.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.++++|.+ .+|+.++|+||||+|||||+++|+|+.-. .+.-++||++.. .-++.
T Consensus 348 ~~~l~~i~~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 348 SQGVFDVSFEA-KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred CccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 46899999999 78999999999999999999999985411 122245665531 11222
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+. .+...++ +|.++++.+++++.+|+++|||||++|.|+..
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 222 11112222221 1122344 67788999999999999999999988888876
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
...+. ..+..+. .+.|+|++||+.+.... ++ +|.+++.|.++..|
T Consensus 507 ~~~i~-~~l~~~~--~~~tvI~isH~~~~~~~-~d--~i~~l~~G~i~~~g 551 (585)
T TIGR01192 507 EARVK-NAIDALR--KNRTTFIIAHRLSTVRN-AD--LVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHH-HHHHHHh--CCCEEEEEEcChHHHHc-CC--EEEEEECCEEEEEC
Confidence 55543 4444442 27899999999988754 66 88889888877655
No 347
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.39 E-value=1.5e-12 Score=163.53 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=110.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|++++|+||||+|||||++.|++..- +.+.-++||++.. .-++.
T Consensus 353 ~~il~~i~~~i-~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 353 QPVLKGLSLQI-KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred CcceecceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 46899999999 7899999999999999999999998531 1122346666531 11122
Q ss_pred H---------------HHHHhcCchhhHhh----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 D---------------RIFVRMGAKDHIMA----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d---------------~i~~~ig~~d~i~~----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+ ..+...+..+.+.. +-..++ +|.++++.+.+++.+|+++|||||+++.|+...
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 2 22334455554443 223355 677889999999999999999999777777755
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..+. ..+..+. .++|+|++||.++.+.. ++ +|.+++.|.++..|+
T Consensus 512 ~~i~-~~l~~~~--~~~tviiitHr~~~~~~-~d--~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 512 RQIL-ELLAEHA--QNKTVLMITHRLTGLEQ-FD--RICVMDNGQIIEQGT 556 (574)
T ss_pred HHHH-HHHHHHc--CCCEEEEEecChhHHHh-CC--EEEEEeCCeEEEeCC
Confidence 5444 3344442 27899999999988765 55 899999998887664
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=99.39 E-value=1.3e-12 Score=176.96 Aligned_cols=159 Identities=11% Similarity=0.071 Sum_probs=111.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
..+++|+++.+ .+|++++|+|||||||||||++|+|..-. .+.-.||++... .+++.
T Consensus 893 ~~iL~~vs~~i-~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 893 LQLLREVTGAF-RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred ceEeeCcEEEE-ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 46899999999 78999999999999999999999985310 011134554321 12222
Q ss_pred H------------------------HHHHhcCchhhHhhcc-----cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1071 D------------------------RIFVRMGAKDHIMAGQ-----STFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1071 d------------------------~i~~~ig~~d~i~~~~-----Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
+ .++..+|..+...... ..++ +|.++++.+..++.+|+|||||||++|.|
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 2 2333334332221111 3455 55667888888999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchh-hhhhcCCCceEEeee-EEEEecCCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL-AVDYKKDPRVSLCHM-ACQVGNGVG 1176 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l-~~~~~~~~~v~~~~~-~~~~~~g~~ 1176 (1288)
+.....+ ..+|+.++++ |.++|++||+++. +...++ ++.+++. |.++..|..
T Consensus 1052 ~~~a~~v-~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D--~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1052 ARAAAIV-MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD--ELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHH-HHHHHHHHHC-CCEEEEEeCCCCHHHHHhCC--EEEEEcCCCEEEEECCc
Confidence 8865544 4677777665 8899999999984 556677 8888886 788777653
No 349
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.38 E-value=1.2e-11 Score=159.12 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=109.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||+|+|+++.- +.+.-.+||++..- -++.
T Consensus 478 ~~vL~~i~l~i-~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 478 TPALDNVSLTI-RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred ccceeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 47899999999 8999999999999999999999998531 12233467765321 1222
Q ss_pred HHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....++.+.+.. +-..++ ++.++++.+.+++.+|+++|||||+++.|+..
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 222 222333333322 123455 67788899999999999999999988887776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+... +..+. .++|+|++||.++.... ++ +|.+++.|.++..|+
T Consensus 637 e~~i~~~-l~~~~--~~~T~iiItHrl~~~~~-~D--~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 637 EERFKDR-LKRWL--AGKTLVLVTHRTSLLDL-VD--RIIVMDNGRIVADGP 682 (694)
T ss_pred HHHHHHH-HHHHh--CCCEEEEEecCHHHHHh-CC--EEEEEeCCEEEeeCC
Confidence 5555433 34443 26899999999987754 55 899999998887664
No 350
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.38 E-value=2.5e-12 Score=160.90 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=107.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc----c-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE----I- 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~----l- 1067 (1288)
..+++|++|.+ .+|+.++|+||||+|||||++.|+|+.- +.+.-.+||++..- +
T Consensus 336 ~~~l~~i~~~i-~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 414 (547)
T PRK10522 336 GFSVGPINLTI-KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG 414 (547)
T ss_pred CeEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhc
Confidence 46899999999 7899999999999999999999998531 11122355554310 0
Q ss_pred --------chHHHHHHhcCchhhHhhc-----ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 000778 1068 --------SPVDRIFVRMGAKDHIMAG-----QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLE 1133 (1288)
Q Consensus 1068 --------~~~d~i~~~ig~~d~i~~~-----~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile 1133 (1288)
..+......++..+.+..+ -..++ ++.++++.+.+++.+|+++|||||++|.|+.....+...+.+
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 0111233344444333221 12455 677788888899999999999999888888766555444444
Q ss_pred HHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1134 HFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1134 ~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
.+ +..++|+|++||.++... .++ +|.+++.|.+++.
T Consensus 495 ~~-~~~~~tvi~itH~~~~~~-~~d--~i~~l~~G~i~e~ 530 (547)
T PRK10522 495 LL-QEMGKTIFAISHDDHYFI-HAD--RLLEMRNGQLSEL 530 (547)
T ss_pred HH-HhCCCEEEEEEechHHHH-hCC--EEEEEECCEEEEe
Confidence 33 223789999999987755 455 8888888887754
No 351
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.38 E-value=9.5e-12 Score=156.75 Aligned_cols=172 Identities=17% Similarity=0.152 Sum_probs=114.1
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------- 1053 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------- 1053 (1288)
.|.+++.....-+ ..++.+.++++|++ .+|+.++|+||||+|||||+|+|+|+.-.
T Consensus 337 ~i~~~~v~f~y~~----~~~~~iL~~inl~i-~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 337 EIEFEQVNFAYPA----RPDQPALDGLNLTV-RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred eEEEEEEEEECCC----CCCCccccceeEEe-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 4677665432211 11257899999999 89999999999999999999999985421
Q ss_pred -hhcCcccccccc--ccchHHHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHh
Q 000778 1054 -AQVGADVPAEIF--EISPVDRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1054 -aq~G~~vPa~~~--~l~~~d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~ 1103 (1288)
.+.-+|+|++.. .-++.+.| +...|..+.+. .+...++ +|.++++.+.++
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 112346666541 11222222 12223222221 1223454 688889999999
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+.+|+++|||||+++.|+..... ....+..+. .++|+|++||..+.... ++ +|..+..|.++..|.
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~-i~~~l~~~~--~~~t~IiitH~~~~~~~-~d--~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQL-VQQALETLM--KGRTTLIIAHRLATVLK-AD--RIVVMDQGRIVAQGT 557 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHH-HHHHHHHHh--CCCEEEEEecchHHHHh-CC--EEEEEECCEEEeeec
Confidence 99999999999977777764433 334444442 26899999999988754 55 888888888876653
No 352
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=9.8e-12 Score=146.63 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=113.4
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-------------------HHhhcCcccccccccc--chH
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------ILAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-------------------ilaq~G~~vPa~~~~l--~~~ 1070 (1288)
++.|+++++|++ .+|+-++|+|+|||||||+||+|.... -+.|+-.+||++..-+ +++
T Consensus 364 k~~iL~gvsf~I-~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl 442 (591)
T KOG0057|consen 364 KRKVLKGVSFTI-PKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTIL 442 (591)
T ss_pred CCceecceeEEe-cCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHH
Confidence 356999999999 899999999999999999999998642 2456667899876321 111
Q ss_pred ---------------HHHHHhcCchhhHhhc---ccch---------HHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 ---------------DRIFVRMGAKDHIMAG---QSTF---------LTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 ---------------d~i~~~ig~~d~i~~~---~Stf---------~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
-.+..+.|..|.+..- .+|. -+|+++++.+.+.+.+|.++|+||| ||.+|
T Consensus 443 ~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa---TS~LD 519 (591)
T KOG0057|consen 443 YNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA---TSALD 519 (591)
T ss_pred HHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc---ccccc
Confidence 1233455666655442 2222 1788999999999999999999999 66666
Q ss_pred HHHHHHHHHHHHHh-ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVH-KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~-~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...- ..+++.+.. ..+.|+||+-|++.++..+. +|.++..|.+...|+
T Consensus 520 ~~TE-~~i~~~i~~~~~~rTvI~IvH~l~ll~~~D---kI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 520 SETE-REILDMIMDVMSGRTVIMIVHRLDLLKDFD---KIIVLDNGTVKEYGT 568 (591)
T ss_pred hhhH-HHHHHHHHHhcCCCeEEEEEecchhHhcCC---EEEEEECCeeEEecc
Confidence 4432 244555443 24789999999999987744 788899888877664
No 353
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.37 E-value=1.8e-12 Score=167.18 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=109.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||+|.|+|+.- +.+.-++||++.. .-++.
T Consensus 492 ~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 492 PPLIENFSLTL-QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCcccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 47899999999 8999999999999999999999998531 1222346776541 11222
Q ss_pred HHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....++.+.+.. +-..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 222 122233332221 123344 67788999999999999999999966665553
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.. .+++.|.+ .++|+|++||.++.+.. +| +|.++..|.++..|+
T Consensus 651 e~----~i~~~l~~-~~~T~IiitHrl~~i~~-~D--~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 651 EK----IIDDNLRR-RGCTCIIVAHRLSTIRD-CD--EIIVLERGKVVQRGT 694 (710)
T ss_pred HH----HHHHHHHh-cCCEEEEEecCHHHHHh-CC--EEEEEeCCEEEEecC
Confidence 33 45555554 48999999999988765 66 899999999988774
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.37 E-value=1.6e-12 Score=165.21 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=97.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----------cccccccc--ccchHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIF--EISPVD--------- 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----------~~vPa~~~--~l~~~d--------- 1071 (1288)
..+.+|++|++ .+|++++|+||||||||||+|+|+|+.- ...| .+||++.. ..++.+
T Consensus 465 ~~il~~isl~i-~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 465 DVLIESLSFEV-PSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred CeeeecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 46899999999 7899999999999999999999999642 1112 35565421 001222
Q ss_pred -------------HHHHhcCchhhHhhc---------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 000778 1072 -------------RIFVRMGAKDHIMAG---------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1288)
Q Consensus 1072 -------------~i~~~ig~~d~i~~~---------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia 1128 (1288)
.++..++..+.+... ...++ +|.++++.+.+++.+|+++|||||++|.|+....
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~--- 619 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG--- 619 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH---
Confidence 223344444433321 14566 5667788888899999999999997777776333
Q ss_pred HHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEe
Q 000778 1129 ESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLC 1165 (1288)
Q Consensus 1129 ~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~ 1165 (1288)
.+.+.+.+ .++|+|++||++++.. .++ ++.++
T Consensus 620 -~l~~~l~~-~~~tvI~isH~~~~~~-~~d--~il~l 651 (659)
T TIGR00954 620 -YMYRLCRE-FGITLFSVSHRKSLWK-YHE--YLLYM 651 (659)
T ss_pred -HHHHHHHH-cCCEEEEEeCchHHHH-hCC--EEEEE
Confidence 33444433 4899999999999864 355 56555
No 355
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.37 E-value=3.6e-12 Score=138.31 Aligned_cols=141 Identities=19% Similarity=0.155 Sum_probs=85.9
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------hcC------------ccccccccc-c--
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--------------QVG------------ADVPAEIFE-I-- 1067 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila--------------q~G------------~~vPa~~~~-l-- 1067 (1288)
.++++++ .+| +++|+||||+||||||++|+++.-.. ..| .+|++.... +
T Consensus 14 ~~~~l~~-~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPF-PPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeec-CCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 4556666 557 99999999999999999998764110 001 122221110 0
Q ss_pred ---chHHHHHHhcCchhhHhhcccchHHHH-HHHHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc
Q 000778 1068 ---SPVDRIFVRMGAKDHIMAGQSTFLTEL-SETALMLSS----ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV 1139 (1288)
Q Consensus 1068 ---~~~d~i~~~ig~~d~i~~~~Stf~~e~-~~~~~il~~----a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~ 1139 (1288)
.-++.++.. .+........++.++ ++++.+..+ +.+|.++|||||++|.|+.....+. .++..+.+
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-- 165 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-- 165 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc--
Confidence 112333333 122223344555444 444444443 2577999999999999888666544 56666643
Q ss_pred CcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1140 QCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1140 ~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+.++|++||+++++. .++ ++..+++.
T Consensus 166 ~~tiIiitH~~~~~~-~~d--~v~~~~~~ 191 (197)
T cd03278 166 ETQFIVITHRKGTME-AAD--RLYGVTMQ 191 (197)
T ss_pred CCEEEEEECCHHHHh-hcc--eEEEEEec
Confidence 588999999999864 566 66665553
No 356
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.37 E-value=3.4e-12 Score=160.33 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=106.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~~--l~~~ 1070 (1288)
..++++++|.+ .+|+.++|+||||||||||+++|+|+.-. .+.-.++|++..- -++.
T Consensus 328 ~~~l~~i~~~i-~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 328 HPALENVNFTL-KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CccccCeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 47899999999 78999999999999999999999985411 1222455654311 1122
Q ss_pred HHH---------------HHhcCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.| ....+..+.+.. + ...++ +|.++++.+.+++.+|+++|||||++|.|+..
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 222 122233322211 1 12344 67778899999999999999999988877776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+.. .+..+. .++|+|++||..+.... ++ +|..++.|.++..|+
T Consensus 487 ~~~i~~-~l~~~~--~~~tii~itH~~~~~~~-~d--~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 487 EHQILH-NLRQWG--EGRTVIISAHRLSALTE-AS--EILVMQHGHIAQRGN 532 (569)
T ss_pred HHHHHH-HHHHHh--CCCEEEEEecchhHHHc-CC--EEEEEeCCEEEEecC
Confidence 554443 344442 37899999999987654 55 788888888776653
No 357
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.37 E-value=3e-12 Score=161.03 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
.+++++++|.+ .+|+.++|+|+||+|||||++.|+|+.- +.+.-+|+|++.. .-++.
T Consensus 345 ~~il~~inl~i-~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 345 RPALDSISLVI-EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CccccCeeEEe-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 47899999999 7899999999999999999999998541 1223356776531 11111
Q ss_pred H----------------HHHHhcCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1071 D----------------RIFVRMGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1071 d----------------~i~~~ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+ ..+...|..+.+.. | -..++ +|.++++.+++++.+|+++|||||+++.|..
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 2 12333344433322 1 12355 7888899999999999999999996666666
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+. ..+..+. .++|+|++||+..+... ++ +|.+++.|.++..|+
T Consensus 504 ~~~~i~-~~L~~~~--~~~tiIiitH~~~~~~~-~D--~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 504 SERLVQ-AALERLM--QGRTTLVIAHRLSTIEK-AD--RIVVMDDGRIVERGT 550 (571)
T ss_pred HHHHHH-HHHHHHh--CCCEEEEEehhhHHHHh-CC--EEEEEeCCEEEeeCC
Confidence 555443 3333332 36899999999987654 55 788888887776553
No 358
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.37 E-value=3.3e-12 Score=161.12 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~~ 1070 (1288)
..++++++|++ .+|+.++|+||||+|||||+|.|+|+.- +.+.-+|||++..- -++.
T Consensus 356 ~~il~~i~l~i-~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 356 VPALRNINFKI-PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred CccccCceEEe-CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 57899999999 7899999999999999999999998541 12233567766321 1122
Q ss_pred HHHH----------------HhcCchhhHh---hcc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1071 DRIF----------------VRMGAKDHIM---AGQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1071 d~i~----------------~~ig~~d~i~---~~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+.|. ...|..+.+. .|+ ..++ +|.++++.+++++.+|+++|||||+++.|+.
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 2221 1223222221 122 2355 6788899999999999999999996666665
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
....+..+ +..+. .++|+|++||..+.... ++ +|.+++.|.+++.|+
T Consensus 515 t~~~i~~~-l~~~~--~~~tvI~VtHr~~~~~~-~D--~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 515 SERAIQAA-LDELQ--KNRTSLVIAHRLSTIEK-AD--EILVVEDGEIVERGT 561 (582)
T ss_pred HHHHHHHH-HHHHh--CCCEEEEEecchHHHHh-CC--EEEEEECCEEEEeCC
Confidence 44444333 33332 36899999999988765 66 899999998887664
No 359
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.35 E-value=2.3e-12 Score=141.69 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=90.8
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----------hhcCccccccccccc-----------------
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----------AQVGADVPAEIFEIS----------------- 1068 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----------aq~G~~vPa~~~~l~----------------- 1068 (1288)
++++|....+|++++|+||||+||||+|++|.+..+- ...-...+ ..+.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~v~~~f~~~~~~~~~~r~~g 96 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE-DTAEVSFTFQLGGKKYRVERSRG 96 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCC-ccEEEEEEEEECCeEEEEEEecC
Confidence 5666654235789999999999999999999842210 00000000 000000
Q ss_pred h----HHH-HHHhcC-chhhHhhcccchHHH-HHHHHHHHHhCC----------CCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1069 P----VDR-IFVRMG-AKDHIMAGQSTFLTE-LSETALMLSSAT----------RNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1069 ~----~d~-i~~~ig-~~d~i~~~~Stf~~e-~~~~~~il~~a~----------~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+ +.+ ++...+ ..+.+.....++++. .++++.+.+++. +|+++|||||++|+|+.....+ ..+
T Consensus 97 l~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~ 175 (213)
T cd03279 97 LDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATA 175 (213)
T ss_pred CCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 0 111 111112 334444555667644 445555555542 6789999999999998866655 456
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
++.+.++ +.++|++||+++++..+++ .+.+++.|
T Consensus 176 l~~~~~~-~~tii~itH~~~~~~~~~~--~i~~~~~~ 209 (213)
T cd03279 176 LELIRTE-NRMVGVISHVEELKERIPQ--RLEVIKTP 209 (213)
T ss_pred HHHHHhC-CCEEEEEECchHHHHhhCc--EEEEEecC
Confidence 6677554 7899999999999988887 66666544
No 360
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.35 E-value=1.5e-11 Score=158.12 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=109.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~~ 1070 (1288)
..++++++|.+ .+|+.++|+|+||||||||+|+|+|+.- +.+.-++||++..- -++.
T Consensus 470 ~~il~~i~l~i-~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 470 PEVLSNLNLDI-KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred ccccccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 46899999999 7899999999999999999999998531 12223466665311 1112
Q ss_pred HHH---------------HHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+. .+-..++ ++.++++.+.+++.+|+++|||||++|.|+..
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 221 22233333322 1223455 67778888889999999999999977777765
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
...+. ..+..+. .++|+|++||..+.... ++ +|.+++.|.++..|+
T Consensus 629 ~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~-~d--~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 629 EALIM-RNMREIC--RGRTVIIIAHRLSTVRA-CD--RIIVLEKGQIAESGR 674 (694)
T ss_pred HHHHH-HHHHHHh--CCCEEEEEeCChHHHHh-CC--EEEEEeCCEEEEeCC
Confidence 54443 3334442 37899999999998765 66 899999998887664
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.35 E-value=2.6e-12 Score=174.50 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=110.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---H----------------hhcCcccccccc---ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---L----------------AQVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---l----------------aq~G~~vPa~~~---~l~~~ 1070 (1288)
+.+++|+++.+ .+|++++|+|||||||||||++|++..- . .+.-.|||+... .+++.
T Consensus 776 ~~iL~~vs~~i-~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 776 RVILNNVDGWV-KPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred cEeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 57899999999 7899999999999999999999998642 1 011235555421 12222
Q ss_pred H------------------------HHHHhcCchhhHhhccc----chH-HHHHHHHHHHHhCCCCc-EEEEeCCCCCCC
Q 000778 1071 D------------------------RIFVRMGAKDHIMAGQS----TFL-TELSETALMLSSATRNS-LVVLDELGRGTS 1120 (1288)
Q Consensus 1071 d------------------------~i~~~ig~~d~i~~~~S----tf~-~e~~~~~~il~~a~~~s-LvLLDEpg~GTs 1120 (1288)
+ .++..++..+....... .++ +|.++++.+++++.+|+ +||||||++|.|
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 2 23333333332222222 455 56667788888999996 999999988888
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh-hhhcCCCceEEeeeE-EEEecCCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA-VDYKKDPRVSLCHMA-CQVGNGVG 1176 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~-~~~~~~~~v~~~~~~-~~~~~g~~ 1176 (1288)
+.....+ ..+|+.++++ |+|+|++||+++.. ...++ ++.+++.| .++..|..
T Consensus 935 ~~~~~~i-~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D--~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 935 SQTAWSI-CKLMRKLADH-GQAILCTIHQPSAILFEEFD--RLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEecCCCHHHHHhcC--EEEEEcCCCEEEEECCc
Confidence 8765544 4677777654 89999999999853 34566 88888886 88877753
No 362
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.5e-12 Score=148.02 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=112.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC---------------------cccccccc--ccch
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---------------------ADVPAEIF--EISP 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---------------------~~vPa~~~--~l~~ 1069 (1288)
..+++|++|++ .+|+.++|+|++||||||++..+++.. ..|.| +++++..- .-++
T Consensus 351 ~~~L~~~~l~l-~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tl 428 (573)
T COG4987 351 TKALKNFNLTL-AQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428 (573)
T ss_pred cchhhccceee-cCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHH
Confidence 57999999999 889999999999999999999999622 22222 22222110 0001
Q ss_pred ---------------HHHHHHhcCchhhHhhc-----------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1070 ---------------VDRIFVRMGAKDHIMAG-----------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1070 ---------------~d~i~~~ig~~d~i~~~-----------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+-.++..+|.++.+... -..|| +|.++++.+..+..+.+++||||||-|.|+.
T Consensus 429 r~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~ 508 (573)
T COG4987 429 RDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 (573)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChh
Confidence 11234455555544332 12344 7888999998889999999999999999988
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.-..+..-+.+++. +.|+||+||....+..+ + +|+++..|.++.+|..
T Consensus 509 TE~~vL~ll~~~~~---~kTll~vTHrL~~le~~-d--rIivl~~Gkiie~G~~ 556 (573)
T COG4987 509 TERQVLALLFEHAE---GKTLLMVTHRLRGLERM-D--RIIVLDNGKIIEEGTH 556 (573)
T ss_pred hHHHHHHHHHHHhc---CCeEEEEecccccHhhc-C--EEEEEECCeeeecCCH
Confidence 77666656666552 67999999998877653 3 8999999999988753
No 363
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.34 E-value=5.9e-12 Score=157.62 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=107.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------------------hhcCcccccccc----cc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------------------AQVGADVPAEIF----EI- 1067 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------------------aq~G~~vPa~~~----~l- 1067 (1288)
.+++++++|.+ .+|++++|+||||+|||||++.|++..-. ...-.+||++.. .+
T Consensus 355 ~~~l~~vs~~i-~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 355 GFALGPIDLRI-AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433 (555)
T ss_pred CceeccceEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence 36899999999 78999999999999999999999984311 111224444321 00
Q ss_pred ---------chHHHHHHhcCchhhHhh---cc---cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1068 ---------SPVDRIFVRMGAKDHIMA---GQ---STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1068 ---------~~~d~i~~~ig~~d~i~~---~~---Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
.-+.......+..+.+.. |. ..+| +|.++++.+.+++.+|+++|||||++|.|+.....+...+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 001122334444443321 22 3455 6778889999999999999999998888887666555555
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
++.+.. .+.|+|++||+++... .++ +|.+++.|++++.
T Consensus 514 ~~~~~~-~~~tiiiisH~~~~~~-~~d--~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKR-QGKTIIIISHDDQYFE-LAD--QIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHh-CCCEEEEEeccHHHHH-hCC--EEEEEECCEEEEe
Confidence 554433 3789999999998654 466 8888888887653
No 364
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.34 E-value=3.5e-12 Score=163.97 Aligned_cols=154 Identities=19% Similarity=0.134 Sum_probs=106.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||++.|+++.- +.+.-++||++.. .-++.
T Consensus 494 ~~vL~~isl~i-~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 494 VPVLKGLTFTL-HPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred CccccCceEEE-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 57899999999 8999999999999999999999998541 1223356776541 11222
Q ss_pred HHH---------------HHhcCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
|+| ....++.+.+.. + -..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 222 222333332221 1 12344 67888999999999999999999966655542
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
- ..+.+ .....++|+|++||.++.... +| +|.++..|.+++.|+
T Consensus 653 e----~~i~~-~~~~~~~TvIiItHrl~~i~~-aD--~IivL~~G~ive~Gt 696 (711)
T TIGR00958 653 E----QLLQE-SRSRASRTVLLIAHRLSTVER-AD--QILVLKKGSVVEMGT 696 (711)
T ss_pred H----HHHHH-hhccCCCeEEEEeccHHHHHh-CC--EEEEEECCEEEEeeC
Confidence 2 23333 323347899999999987654 55 899999999988775
No 365
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.33 E-value=1.9e-11 Score=157.66 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=106.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+++|++|++ .+|+.++|+||||||||||+|.|+++.- +.+.-++||++.. .-++.
T Consensus 487 ~~iL~~isl~i-~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 487 SNILSDISLTI-KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred CcceeceeEEE-CCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 46899999999 8899999999999999999999998541 1222346776531 11122
Q ss_pred HHH----------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1071 DRI----------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1071 d~i----------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+.| ....++.+.+.. +-..++ +|.++++.+++++.+|+++|||||+++.|+.
T Consensus 566 eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 566 ENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred HHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 222 222233333321 123344 6778899999999999999999997777665
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.-..+. +.|.+..++|+|++||..+.... ++ +|.+++.|.++..|+
T Consensus 646 te~~i~----~~L~~~~~~T~IiitHr~~~~~~-~D--~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 646 TEKKIV----NNLLNLQDKTIIFVAHRLSVAKQ-SD--KIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHHHH----HHHHHhcCCEEEEEecchHHHHc-CC--EEEEEECCEEEEECC
Confidence 444333 33322237899999999987754 56 899999999887764
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.33 E-value=2.6e-12 Score=174.54 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=111.5
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---H----------------h----hcCccccccc---ccc
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---L----------------A----QVGADVPAEI---FEI 1067 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---l----------------a----q~G~~vPa~~---~~l 1067 (1288)
.+++|+++.+ .+|++++|+||||||||||||+|+|... . . +.-.||++.. ..+
T Consensus 75 ~iL~~vs~~i-~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLI-KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 5788999998 7899999999999999999999998530 0 0 0013444432 112
Q ss_pred chHHH-----------------------------HHHhcCchhhHhhc-----ccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1068 SPVDR-----------------------------IFVRMGAKDHIMAG-----QSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1068 ~~~d~-----------------------------i~~~ig~~d~i~~~-----~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
++.+. ++..+|..+..... ...++ +|.++++.+..++.+|+++||
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 22222 22333333221110 12344 577788888889999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc-hhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH-RLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~-~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|||++|.|+.....+. .+|+.++++.|.++|++||+. +.+..+++ +|.+++.|.++..|.
T Consensus 234 DEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D--~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 234 DNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFD--KVIVLYEGYQIYFGP 294 (1394)
T ss_pred eCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhc--eEEEEeCCeEEEECC
Confidence 9999999998766654 677777765588999999996 56777777 899999999888774
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.33 E-value=1.3e-11 Score=139.06 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=66.6
Q ss_pred hcCchh-hHhhcccchHH-HHHHHHHHHHhCCC---CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1076 RMGAKD-HIMAGQSTFLT-ELSETALMLSSATR---NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1076 ~ig~~d-~i~~~~Stf~~-e~~~~~~il~~a~~---~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
++|... .+.+..+++++ |.++++.+..++.+ |+|+|||||++|.++.+...+. .++..+.+. |.++|++||++
T Consensus 155 ~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~-g~tvIiitH~~ 232 (261)
T cd03271 155 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDK-GNTVVVIEHNL 232 (261)
T ss_pred HcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCH
Confidence 344443 34455667774 45566666666664 7999999999999999877664 566777654 88999999999
Q ss_pred hhhhhhcCCCceEEe------eeEEEEecC
Q 000778 1151 RLAVDYKKDPRVSLC------HMACQVGNG 1174 (1288)
Q Consensus 1151 ~l~~~~~~~~~v~~~------~~~~~~~~g 1174 (1288)
+++. .++ ++..+ +.|.++..|
T Consensus 233 ~~i~-~aD--~ii~Lgp~~g~~~G~iv~~G 259 (261)
T cd03271 233 DVIK-CAD--WIIDLGPEGGDGGGQVVASG 259 (261)
T ss_pred HHHH-hCC--EEEEecCCcCCCCCEEEEeC
Confidence 9876 466 77777 556665544
No 368
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.33 E-value=2.7e-12 Score=167.60 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=116.6
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCccccccccccc----
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEIFEIS---- 1068 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~vPa~~~~l~---- 1068 (1288)
+.+++++.+ .+|++.++.|||||||||+++++.|..- ..++| |.|+..+-..
T Consensus 580 Av~~ls~~V-~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAV-PPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEe-cCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccH
Confidence 788999999 8899999999999999999999998431 12233 5555432110
Q ss_pred --------------------hHHHHHHhcCchhhHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1069 --------------------PVDRIFVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1069 --------------------~~d~i~~~ig~~d~i~~~~Stf~~e~~-~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
.++.++..++..+......++++++++ ++..+++++.+|++|+||||+.|.||.. .-.
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~a-rr~ 736 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA-RRH 736 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHH-HHH
Confidence 112223334444444444566776665 4788888999999999999999999975 445
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.|.++..+.++ |..+|++||+++.+..+|+ ++.+|..|....-|+.
T Consensus 737 lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCt--R~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 737 LWDIIARLRKN-GKAIILTSHSMEEAEALCT--RTAIMVIGQLRCIGSP 782 (885)
T ss_pred HHHHHHHHHhc-CCEEEEEcCCHHHHHHHhh--hhheeecCeeEEecCh
Confidence 78999998775 4499999999999999999 8888888888876653
No 369
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.33 E-value=1.5e-11 Score=125.05 Aligned_cols=129 Identities=27% Similarity=0.419 Sum_probs=83.9
Q ss_pred cEEEEEEecCCCCCCCCCCCEEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhhcC
Q 000778 453 SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTR 532 (1288)
Q Consensus 453 ~yllaI~e~~~~~~~~~~~~~iGva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIi~~~~~ls~~~~~~l~~~~~ 532 (1288)
|||+||.++. ....||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+......+. ...
T Consensus 1 Nyl~aI~~~~-------~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~~~~-~~~ 69 (137)
T PF05188_consen 1 NYLAAIYEKN-------DEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISALLS-SLK 69 (137)
T ss_dssp -EEEEEEEET-------CSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHHHHH-CCT
T ss_pred CEEEEEEEec-------CCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccchhhh-hhc
Confidence 6999999951 235699999999999999999998 89999999999999999998876543311111 111
Q ss_pred CCc-cccccCCccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHH
Q 000778 533 NPL-VNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGT 611 (1288)
Q Consensus 533 ~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algal 611 (1288)
... .....+. .+++.....+.+...|..... ...+ + ...++.+++|+|++
T Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~---------------~~~~---~----------~~~~~~~~~Al~al 120 (137)
T PF05188_consen 70 NSFFKVTETPS-WYFDSEFASEDIEEQFGVADL---------------DGFG---L----------EEDKELALSALGAL 120 (137)
T ss_dssp TTCCEEEEETC-GGGSHHHHHHHHHHHCTSSST---------------CCCT---T----------GGGGHHHHHHHHHH
T ss_pred cccceeeecch-hhhhhHHHHHHHHHhhccccc---------------cccC---c----------cCCCHHHHHHHHHH
Confidence 111 1112222 333455556666655532110 0000 0 01357899999999
Q ss_pred HHHHHHhccc
Q 000778 612 LFYLKKSFLD 621 (1288)
Q Consensus 612 l~YL~~~~l~ 621 (1288)
|.||+.++..
T Consensus 121 l~Yl~~t~~~ 130 (137)
T PF05188_consen 121 LKYLEETQKS 130 (137)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHCcc
Confidence 9999987765
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.33 E-value=8.1e-12 Score=141.86 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=119.2
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------------ 1053 (1288)
+.|.+++..--+-. -.....+.++|+|.+ ..|+.++|+|.+|||||.....|.++.--
T Consensus 5 ~lL~v~nLsV~f~~---~~~~~~aVk~isf~i-~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 5 PLLSIRNLSVAFHQ---EGGTVEAVKGISFDI-EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred cceeeeccEEEEec---CCcceEeeccceeee-cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 45666655433321 123467899999999 89999999999999999999988864310
Q ss_pred ------------hhcCccccccc-cccchH----H----------------------HHHHhcCchh---hHhhcccchH
Q 000778 1054 ------------AQVGADVPAEI-FEISPV----D----------------------RIFVRMGAKD---HIMAGQSTFL 1091 (1288)
Q Consensus 1054 ------------aq~G~~vPa~~-~~l~~~----d----------------------~i~~~ig~~d---~i~~~~Stf~ 1091 (1288)
..+|+ +.++. ..+.++ . .++.++|..+ .+......++
T Consensus 81 ~~se~~lr~iRG~~I~M-IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 81 AASERQLRGVRGNKIGM-IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred cCCHHHHhhhcccceEE-EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 01111 11111 001111 1 1233333322 2233334445
Q ss_pred -HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1092 -TELSETALMLSSATRNSLVVLDELGRGTSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1092 -~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
++.+++..+++++++|+|||.||| |..+|. .+-...+|..|..+.|..+||+|||+.++..+++ +|.+|..|
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEP---TTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~AD--rV~VM~~G 234 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEP---TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFAD--RVYVMQHG 234 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCC---cchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhh--hEEEEecc
Confidence 566778888899999999999999 888883 3334477888888889999999999999999999 99999999
Q ss_pred EEEecCC
Q 000778 1169 CQVGNGV 1175 (1288)
Q Consensus 1169 ~~~~~g~ 1175 (1288)
.+++.|.
T Consensus 235 ~ivE~~~ 241 (534)
T COG4172 235 EIVETGT 241 (534)
T ss_pred EEeecCc
Confidence 9998763
No 371
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.33 E-value=3.4e-12 Score=144.87 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc------------------------c---cccc-
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD------------------------V---PAEI- 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~------------------------v---Pa~~- 1064 (1288)
-.+.++|+|+. ..|+.++|+|.+|||||||=++|..+.- ++ |.. | |-.+
T Consensus 300 ~~AVd~isl~L-~~gqTlGlVGESGSGKsTlG~allrL~~-s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTL-RRGQTLGLVGESGSGKSTLGLALLRLIP-SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEe-cCCCeEEEEecCCCCcchHHHHHHhhcC-cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 35779999998 7899999999999999999988876431 11 110 0 1000
Q ss_pred -cccchHH-----------------------HHHHhcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1065 -FEISPVD-----------------------RIFVRMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1065 -~~l~~~d-----------------------~i~~~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
.++.+-. ..+..+|.. .........|++ +.++++.+.+++.+|++|+||||
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEP--- 453 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP--- 453 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCC---
Confidence 0111100 112223322 223334566774 56678888899999999999999
Q ss_pred CChHHH--HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1119 TSTSDG--QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1119 Ts~~Dg--~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
||.+|. ++....+|..|.++.+..-||+|||+..+..+++ +|.+|+.|.+++.|.
T Consensus 454 TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~--~viVm~~GkiVE~G~ 510 (534)
T COG4172 454 TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCH--RVIVMRDGKIVEQGP 510 (534)
T ss_pred chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhc--eEEEEeCCEEeeeCC
Confidence 999983 4445588888888889999999999999999999 999999999999874
No 372
>PLN03140 ABC transporter G family member; Provisional
Probab=99.30 E-value=3.5e-12 Score=172.89 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=109.7
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------------hcCcccccccc---ccchH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--------------------QVGADVPAEIF---EISPV 1070 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila--------------------q~G~~vPa~~~---~l~~~ 1070 (1288)
.|++|+++.+ .+|++++|+||||||||||||+|+|..-.. +.-.||++... .+++.
T Consensus 179 ~IL~~vs~~i-~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 179 TILKDASGII-KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred eeccCCeEEE-eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 5788999998 789999999999999999999999853110 11134444321 11222
Q ss_pred H-------------------------------------------------------HHHHhcCchhhH-----hhcccch
Q 000778 1071 D-------------------------------------------------------RIFVRMGAKDHI-----MAGQSTF 1090 (1288)
Q Consensus 1071 d-------------------------------------------------------~i~~~ig~~d~i-----~~~~Stf 1090 (1288)
+ .++..+|..+.. ......+
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 2 222233332211 0011233
Q ss_pred H-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc-hhhhhhcCCCceEEeeeE
Q 000778 1091 L-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH-RLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1091 ~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~-~l~~~~~~~~~v~~~~~~ 1168 (1288)
+ +|.++++.+..++.+|++++||||++|.|+.....+. .+|+.+++..|.|+|++||+. +.+..+++ +|.+++.|
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD--~vilL~~G 414 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFD--DIILLSEG 414 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhh--eEEEeeCc
Confidence 4 5666777777889999999999999999988777665 566677655588999999986 46667777 89999999
Q ss_pred EEEecCC
Q 000778 1169 CQVGNGV 1175 (1288)
Q Consensus 1169 ~~~~~g~ 1175 (1288)
.++..|.
T Consensus 415 ~ivy~G~ 421 (1470)
T PLN03140 415 QIVYQGP 421 (1470)
T ss_pred eEEEeCC
Confidence 9988774
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.29 E-value=7.4e-12 Score=171.71 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=109.5
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------hhcCcccccccc--ccchHHHHH--------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------AQVGADVPAEIF--EISPVDRIF-------- 1074 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------aq~G~~vPa~~~--~l~~~d~i~-------- 1074 (1288)
++.+++|++|.+ .+|++++|+|||||||||||++|+|..-. ...-.|+|+... ..++.+.|.
T Consensus 672 ~~~iL~~isl~i-~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 672 PKVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CceeEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 356899999999 78999999999999999999999985421 111235665431 112222221
Q ss_pred ------Hhc-----------CchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1075 ------VRM-----------GAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1075 ------~~i-----------g~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
... |....+.....+++ ++.++++.+.+++.+|+++|||||+++.|+..+..+...++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 111 12222223334555 566678888889999999999999888888766666554443332
Q ss_pred hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.|+|++||+++++.. ++ +|.+++.|.++..|+
T Consensus 831 --~~~TvIlvTH~~~~~~~-ad--~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 831 --AGKTRVLATHQVHVVPR-AD--YVVALGDGRVEFSGS 864 (1560)
T ss_pred --CCCEEEEEeCCHHHHHh-CC--EEEEEECCEEEEecC
Confidence 37899999999998854 66 899999998877664
No 374
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.28 E-value=1.7e-11 Score=166.95 Aligned_cols=77 Identities=8% Similarity=0.088 Sum_probs=58.1
Q ss_pred cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEee
Q 000778 1088 STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCH 1166 (1288)
Q Consensus 1088 Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~ 1166 (1288)
+.++ ++.++++.+++++.+|++||||||+++.|+..... ....|+.+.+..+.|+|++||+++.+. .++ +|.+++
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~-i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD--~Iivl~ 653 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL-VQKTINNLKGNENRITIIIAHRLSTIR-YAN--TIFVLS 653 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH-HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCC--EEEEEe
Confidence 3455 56677888889999999999999977777764443 345566664434789999999999874 566 888888
Q ss_pred eE
Q 000778 1167 MA 1168 (1288)
Q Consensus 1167 ~~ 1168 (1288)
.|
T Consensus 654 ~g 655 (1466)
T PTZ00265 654 NR 655 (1466)
T ss_pred CC
Confidence 75
No 375
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=7.4e-12 Score=157.09 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=118.2
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc-----
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE----- 1066 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~----- 1066 (1288)
.+.++++|+... .+|++++|+||.||||||||..++|-.- +..+-+||+++..-
T Consensus 42 ~k~iL~~vsg~~-~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 42 TKTILKGVSGTA-KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred cceeeeCcEEEE-ecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 368999999998 8899999999999999999999998431 12223455444321
Q ss_pred ----------------------cchHHHHHHhcCchhhHhhccc-----chH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1067 ----------------------ISPVDRIFVRMGAKDHIMAGQS-----TFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1067 ----------------------l~~~d~i~~~ig~~d~i~~~~S-----tf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
...++.+...+|..+.-..-.. ..+ +|.+|++.++.++++|+++++||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1134556666665522211111 122 799999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchh-hhhhcCCCceEEeeeEEEEecCCC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL-AVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l-~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.|...+..+. .+|+.+++. |++||++=|.+.- .-.+.| ++.++..|..+..|..
T Consensus 201 LDS~sA~~vv-~~Lk~lA~~-grtVi~tIHQPss~lf~lFD--~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 201 LDSFSALQVV-QLLKRLARS-GRTVICTIHQPSSELFELFD--KLLLLSEGEVVYSGSP 255 (613)
T ss_pred cchhhHHHHH-HHHHHHHhC-CCEEEEEEeCCcHHHHHHHh--HhhhhcCCcEEEecCH
Confidence 9988777654 788889887 9999999999862 233444 7888999988888753
No 376
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.26 E-value=1.9e-11 Score=152.39 Aligned_cols=141 Identities=23% Similarity=0.200 Sum_probs=96.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccc--ccchH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF--EISPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~--~l~~~ 1070 (1288)
..+.+|++|.+ .+|+.++|+||||+|||||+|.|+|+.- +.+.-++||++.. .-++.
T Consensus 335 ~~il~~i~l~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 335 APALRPVSFTV-PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred cccccceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 47899999999 7999999999999999999999998431 1122346666531 11122
Q ss_pred HHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 000778 1071 DRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D 1123 (1288)
+.+ ....+..+.+.. +-..++ +|.++++.+.+++.+|+++|||||+++.|+..
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 222 222333332221 223455 67778889999999999999999977777776
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
...+... +..+. .++|+|++||+++.... ++
T Consensus 494 ~~~i~~~-l~~~~--~~~t~i~itH~~~~~~~-~d 524 (529)
T TIGR02857 494 EALVTEA-LRALA--QGRTVLLVTHRLALAER-AD 524 (529)
T ss_pred HHHHHHH-HHHhc--CCCEEEEEecCHHHHHh-CC
Confidence 5555433 33332 37899999999988754 44
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.25 E-value=1e-11 Score=170.11 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh-------cCcccccccc--ccchHHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-------VGADVPAEIF--EISPVDRIF--------- 1074 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-------~G~~vPa~~~--~l~~~d~i~--------- 1074 (1288)
..+++|++|.+ .+|++++|+|||||||||||++|+|..-... .-.|+|+... ..++.+.|.
T Consensus 439 ~~~l~~i~l~i-~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKL-EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 46899999999 7899999999999999999999998652210 0135555431 112333332
Q ss_pred -----HhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1075 -----VRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1075 -----~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
...++.+.+. ....+++ ++.++++.+.+++.+|+++|||||++|.|+..+..+...++..+.+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~ 597 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 1112222221 1124566 4556788888889999999999999999988877776555555532
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
++|+|++||+++.+.. ++ +|..+..|.++..|.
T Consensus 598 --~~tvilvtH~~~~~~~-ad--~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 598 --NKTRILVTSKLEHLKK-AD--KILLLHEGVCYFYGT 630 (1490)
T ss_pred --CCeEEEEeCChHHHHh-CC--EEEEEECCEEEEEcC
Confidence 7899999999998765 66 899999898887664
No 378
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.25 E-value=3.2e-11 Score=151.66 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=109.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCccccccccc--cc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--IS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~~~--l~ 1068 (1288)
++.+.+|++|.+ .+|+.++|+||+||||||+++.+.++. +..++| +||++..- -+
T Consensus 341 ~~~vl~~is~~i-~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSI-EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGT 418 (567)
T ss_pred CCccccCceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeeccc
Confidence 358999999999 889999999999999999999999743 234455 78866421 12
Q ss_pred hHHHH---------------HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1069 PVDRI---------------FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1069 ~~d~i---------------~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+.+.| ....++.|.+.. +-..++ +|.++++.+++++.+|+++|||||++..|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 22222 111222333322 123344 677889999999999999999999666666
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..-..+..++. .+. + +.|+|+++|.+..... +| +|.++..|.+++.|+
T Consensus 499 ~tE~~I~~~l~-~l~-~-~rT~iiIaHRlsti~~-aD--~IiVl~~G~i~e~G~ 546 (567)
T COG1132 499 ETEALIQDALK-KLL-K-GRTTLIIAHRLSTIKN-AD--RIIVLDNGRIVERGT 546 (567)
T ss_pred HhHHHHHHHHH-HHh-c-CCEEEEEeccHhHHHh-CC--EEEEEECCEEEEecC
Confidence 54444444433 343 2 4689999999988777 66 899999999988875
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.24 E-value=1.9e-11 Score=143.69 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=97.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--HhhcCccc------------------cccc--cccc-
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--LAQVGADV------------------PAEI--FEIS- 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--laq~G~~v------------------Pa~~--~~l~- 1068 (1288)
+..+..|+.|.+ .+|+-++|+|||||||||+|+.|++--+ ..+++.|. ++.. .++.
T Consensus 87 g~~l~kd~~~El-~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 87 GVELIKDVTLEL-NRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred CceeeeeeeEEe-cCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 456778899998 7899999999999999999999997321 12222221 0000 0000
Q ss_pred ---------------hHHHHHHhcC--------------------chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEE
Q 000778 1069 ---------------PVDRIFVRMG--------------------AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1069 ---------------~~d~i~~~ig--------------------~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLL 1112 (1288)
-++.++.|+. ....+....-.|+ +-+.+++.+..+..+|+||||
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL 245 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL 245 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence 0111222211 1111122233444 344567777778999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCc-EEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQC-RGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~-~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
||| |+++|-.+++| |+.++.+... ++++++|+.++...+|. +|+-++++.
T Consensus 246 DEP---tnhLDleA~~w--Lee~L~k~d~~~lVi~sh~QDfln~vCT--~Ii~l~~kk 296 (614)
T KOG0927|consen 246 DEP---TNHLDLEAIVW--LEEYLAKYDRIILVIVSHSQDFLNGVCT--NIIHLDNKK 296 (614)
T ss_pred cCC---ccCCCHHHHHH--HHHHHHhccCceEEEEecchhhhhhHhh--hhheecccc
Confidence 999 88888888776 4444444455 79999999999999998 777776665
No 380
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.23 E-value=2.9e-11 Score=141.33 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=109.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccccc--cch
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~--l~~ 1069 (1288)
.+++.++++|.+ .+|+.++|+||+|||||||.|.|.|+.. +...-.|+|++-.- =++
T Consensus 348 ~~pil~~isF~l-~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGISFAL-QAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecceeEe-cCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 368999999999 7899999999999999999999998652 22233477765311 011
Q ss_pred HHHHHHhcC----------------chhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1070 VDRIFVRMG----------------AKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1070 ~d~i~~~ig----------------~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
..+ .+|++ +.|-|. .+-++++ ++.++++.+.++-.+|.||+||||-+..|.
T Consensus 427 aeN-IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 427 AEN-IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHH-HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 111 12222 222222 2234555 577789999999999999999999777777
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.--.+++.+|++ +.. .|+++|++||-..+... .| .|.+++.|.+-.-|
T Consensus 506 ~GE~AL~~Ai~~-~k~-rG~~vvviaHRPs~L~~-~D--kilvl~~G~~~~FG 553 (580)
T COG4618 506 EGEAALAAAILA-AKA-RGGTVVVIAHRPSALAS-VD--KILVLQDGRIAAFG 553 (580)
T ss_pred hHHHHHHHHHHH-HHH-cCCEEEEEecCHHHHhh-cc--eeeeecCChHHhcC
Confidence 655666656554 544 59999999999987654 34 78899988776544
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.23 E-value=5e-12 Score=128.93 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=104.8
Q ss_pred cccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------------HHhhcC-------------cc
Q 000778 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------------ILAQVG-------------AD 1059 (1288)
Q Consensus 1019 i~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------------ilaq~G-------------~~ 1059 (1288)
++..+ ..|+++=++||||+||||||-.++|+. +++|.- .+
T Consensus 18 lS~qv-~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 18 LSGEV-RAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccc-ccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 34444 468999999999999999999999843 233321 12
Q ss_pred ccccccccchHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHH-------hCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 000778 1060 VPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLS-------SATRNSLVVLDELGRGTSTSDGQAIAESV 1131 (1288)
Q Consensus 1060 vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~-------~a~~~sLvLLDEpg~GTs~~Dg~aia~ai 1131 (1288)
+|+ ...-+.++.|...++..|.+-+..+.++ +|.+++..+.. .-....|+|+|||-++.|...-. ...++
T Consensus 97 qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~-aLdrl 174 (248)
T COG4138 97 QPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS-ALDRL 174 (248)
T ss_pred Cch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHH-HHHHH
Confidence 333 1223345666667778888877777777 46665533321 12345799999995555544333 34588
Q ss_pred HHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1132 LEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1132 le~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+++++.. |.+||++.||++-+...++ ++.++..|..+..|.
T Consensus 175 l~~~c~~-G~~vims~HDLNhTLrhA~--~~wLL~rG~l~~~G~ 215 (248)
T COG4138 175 LSALCQQ-GLAIVMSSHDLNHTLRHAH--RAWLLKRGKLLASGR 215 (248)
T ss_pred HHHHHhC-CcEEEEeccchhhHHHHHH--HHHHHhcCeEEeecc
Confidence 9999875 9999999999998887777 788888888877764
No 382
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=3e-11 Score=120.48 Aligned_cols=140 Identities=17% Similarity=0.139 Sum_probs=92.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH----------------------HhhcCcc------ccccc
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGAD------VPAEI 1064 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i----------------------laq~G~~------vPa~~ 1064 (1288)
...+-++++++ .+|+++-|+||+||||||||.-++|..- -.|+|.. .|.-+
T Consensus 15 ~cLLa~~n~Ti-a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 15 SCLLANVNFTI-AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred ceEEEeeeEEe-cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 45566789998 7899999999999999999999987431 0123321 11110
Q ss_pred ----------------cccchHHHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1065 ----------------FEISPVDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1065 ----------------~~l~~~d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
++-...+.-++++|......+...|+++ +..+++....+...|.++|||||++..|..-....
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qf 173 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHH
Confidence 1112234445666666555556666774 44567777888899999999999544443323333
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhh
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~ 1154 (1288)
..-+..++.. .|..++.+|||++.+.
T Consensus 174 R~wVFs~~r~-agiPtv~VTHD~~Dvp 199 (213)
T COG4136 174 RQWVFSEVRA-AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHh-cCCCeEEEecccccCC
Confidence 3345555543 5889999999998765
No 383
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.21 E-value=1.4e-10 Score=159.59 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=108.4
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------hcCcccccccc--ccchHHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------QVGADVPAEIF--EISPVDRIF--------- 1074 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------q~G~~vPa~~~--~l~~~d~i~--------- 1074 (1288)
..+++|++|.+ .+|++++|+|||||||||||++|+|..-.. ..-.|||+... ..++.+.|.
T Consensus 651 ~~~l~~isl~i-~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 651 PPTLNGITFSI-PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 46899999999 789999999999999999999999854221 11146666531 112222221
Q ss_pred -----HhcCchhhH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 000778 1075 -----VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVH 1137 (1288)
Q Consensus 1075 -----~~ig~~d~i-----------~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~ 1137 (1288)
...+..+.+ .....+++ ++.++++.+.++..+|+++|||||+++.|+.-...+...++.....
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 111111111 12224455 5667788888899999999999998888777666555444431001
Q ss_pred ccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 KVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 ~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..++|+|++||+++++.. ++ +|..++.|.++..|+
T Consensus 810 ~~~~tvIlvTH~~~~l~~-~D--~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 810 LKNKTRILVTHGISYLPQ-VD--VIIVMSGGKISEMGS 844 (1522)
T ss_pred hcCCEEEEEeCChhhhhh-CC--EEEEecCCeEEeeCC
Confidence 136899999999998866 66 899999998887764
No 384
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.21 E-value=5.3e-11 Score=152.70 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=107.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCccccccc--cccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI--FEIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~--~~l~ 1068 (1288)
+..|+++++|.+ ..|++++|+||+||||||+++.|..+. +..|+|. |-++. ...+
T Consensus 365 dv~Il~g~sl~i-~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl-V~QePvlF~~t 442 (1228)
T KOG0055|consen 365 DVKILKGVSLKI-PSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL-VSQEPVLFATT 442 (1228)
T ss_pred cchhhCCeEEEe-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe-eeechhhhccc
Confidence 358999999999 889999999999999999999999743 2344442 22221 1112
Q ss_pred hHHHHHH---------------hcCchhhHh---hcccc--------hH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1069 PVDRIFV---------------RMGAKDHIM---AGQST--------FL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1069 ~~d~i~~---------------~ig~~d~i~---~~~St--------f~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+.+.|.- ..++.+.+. .+..| ++ ++.+|+|.+.+++.+|.+||||||+++.|+
T Consensus 443 I~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~ 522 (1228)
T KOG0055|consen 443 IRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 522 (1228)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCH
Confidence 2222210 011111111 11111 34 455678999999999999999999666666
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1122 SDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1122 ~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.. ..+....|+++. .|.|+|+++|.+..... +| .+.+++.|.+++.|+
T Consensus 523 ~s-e~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD--~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 523 ES-ERVVQEALDKAS--KGRTTIVVAHRLSTIRN-AD--KIAVMEEGKIVEQGT 570 (1228)
T ss_pred HH-HHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cC--EEEEEECCEEEEecC
Confidence 53 334556666664 37799999999998877 66 899999999999885
No 385
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.19 E-value=7e-11 Score=147.38 Aligned_cols=134 Identities=17% Similarity=0.141 Sum_probs=90.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCcccccccc--ccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF--EISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~~--~l~~~d 1071 (1288)
+.+++|++|++ .+|+.++|+||+|||||||++.|+++.-. .+.-++||++.. .-++.+
T Consensus 348 ~~vL~~isl~i-~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 348 PPVLDGVSLDL-PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred CceeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH
Confidence 35899999999 89999999999999999999999985311 112357777642 112222
Q ss_pred H---------------HHHhcCchhhHhh---cc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1072 R---------------IFVRMGAKDHIMA---GQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1072 ~---------------i~~~ig~~d~i~~---~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
. .....++.+.+.. |. ..++ +|.++++.+++++.+|+++|||||+++.|+...
T Consensus 427 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 427 NLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 2 2223344443332 21 2344 688889999999999999999999666666544
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..+...+ ..+ ..++|+|++||.+
T Consensus 507 ~~I~~~l-~~~--~~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDL-LAA--LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHH-HHh--cCCCEEEEEecCC
Confidence 4433332 222 1368999999973
No 386
>PLN03130 ABC transporter C family member; Provisional
Probab=99.16 E-value=1.3e-10 Score=159.78 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=109.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|++ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1252 ~~VL~~is~~I-~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1252 PPVLHGLSFEI-SPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred CceecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 46899999999 8999999999999999999999998541 122334677764211 111
Q ss_pred HH--------------HHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 DR--------------IFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+. .+.+.++.+.+.. +-+.|+ ++.++++.+++++.+|++|||||++++.|+..-
T Consensus 1331 eNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te 1410 (1622)
T PLN03130 1331 FNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410 (1622)
T ss_pred HHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 11 1223333333322 223566 566778888889999999999999666655533
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
.. ....++.+. .+||+|+++|.++.+.. +| +|.+++.|++++.|++
T Consensus 1411 ~~-Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~D--rIlVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1411 AL-IQKTIREEF--KSCTMLIIAHRLNTIID-CD--RILVLDAGRVVEFDTP 1456 (1622)
T ss_pred HH-HHHHHHHHC--CCCEEEEEeCChHHHHh-CC--EEEEEECCEEEEeCCH
Confidence 32 233444332 37999999999998766 45 8999999999988753
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.16 E-value=1.3e-10 Score=126.23 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=81.5
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHh----hcCc----cccc--cccc--------------cchH--HHHHHhcCchh
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILA----QVGA----DVPA--EIFE--------------ISPV--DRIFVRMGAKD 1081 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ila----q~G~----~vPa--~~~~--------------l~~~--d~i~~~ig~~d 1081 (1288)
.+.+|+||||+||||+|.+|....-.. ..|. ++.. ..+. .... +.+...+...+
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTSNK 101 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcccc
Confidence 478999999999999999987432100 0010 0000 0000 0001 11212222223
Q ss_pred hHhhcccchHHHHHH-HHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhc--cCcEEEEEcCCchhhh
Q 000778 1082 HIMAGQSTFLTELSE-TALMLSS----ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHK--VQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1082 ~i~~~~Stf~~e~~~-~~~il~~----a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~--~~~~vl~~TH~~~l~~ 1154 (1288)
.......+++..+++ ++.+..+ +.+|+++|||||++|.|......+.. ++..+... .++++|++||+++.+.
T Consensus 102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~-~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD-LLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH-HHHHHHhcCCCcEEEEEECCcccccc
Confidence 333445666655554 4444444 58999999999999999887665554 44444333 2468999999999887
Q ss_pred hhcCCCceEEeeeE
Q 000778 1155 DYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1155 ~~~~~~~v~~~~~~ 1168 (1288)
.+ + +|.++.++
T Consensus 181 ~~-d--~v~~~~~~ 191 (198)
T cd03276 181 SS-D--DVKVFRMK 191 (198)
T ss_pred cc-c--ceeEEEec
Confidence 65 4 78787775
No 388
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.16 E-value=3.5e-10 Score=107.19 Aligned_cols=92 Identities=41% Similarity=0.554 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCceeeeeccccccCCCCCcEEEEeeecCcEEEeChHHH
Q 000778 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1288)
Q Consensus 837 g~d~~ld~~~~~~~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~i~v~~~~~~~~p~~~~~~ss~~~~~ry~tp~l~ 916 (1288)
|+|++||.+++.+.+++++|++++++.++.++.++++|..+++.+|+|+||.....++|.+|+..+++++..||+||++.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~ 80 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELK 80 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHH
Confidence 78999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000778 917 KLLGELSQAESE 928 (1288)
Q Consensus 917 ~l~~~l~~~~~~ 928 (1288)
+|+.++.+++++
T Consensus 81 ~L~~~~~~~~ee 92 (92)
T PF05190_consen 81 ELNEELKEAEEE 92 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999988753
No 389
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.16 E-value=1.9e-10 Score=157.96 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=107.7
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH-------------------HhhcCcccccccccc--chHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFEI--SPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i-------------------laq~G~~vPa~~~~l--~~~d 1071 (1288)
..+++|++|.+ .+|+.++|+|++|||||||+++|+++.- +.+.-++||++..-+ ++.+
T Consensus 1232 ~~vL~~is~~I-~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1232 RAVLQDLSFSV-EGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred cceeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence 57999999999 7999999999999999999999998641 112224566654211 1111
Q ss_pred --------------HHHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1072 --------------RIFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1072 --------------~i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
..+.+.++.+.+.. +-..|+ +|.++++.+++++.++++||||||+++.|+..-.
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 12333444433322 123465 5677788888899999999999996666665433
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.| ..+|.... .+||+|++||.++.+.. +| +|.++..|.++..|+
T Consensus 1391 ~I-~~~L~~~~--~~~TvI~IaHRl~ti~~-~D--rIlvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1391 II-RKTLKQSF--SNCTVILSEHRVEALLE-CQ--QFLVIEGSSVKQYDS 1434 (1490)
T ss_pred HH-HHHHHHHc--CCCEEEEEecCHHHHHh-CC--EEEEEECCEEEEeCC
Confidence 33 33444332 37999999999987765 45 899999998887653
No 390
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.15 E-value=1.1e-10 Score=127.63 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=51.0
Q ss_pred hhcccchHHHHHH-------HHHHHHhCCCCcEEEEeCCCCCCChHHHH-HHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1084 MAGQSTFLTELSE-------TALMLSSATRNSLVVLDELGRGTSTSDGQ-AIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1084 ~~~~Stf~~e~~~-------~~~il~~a~~~sLvLLDEpg~GTs~~Dg~-aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
......++.++++ ++.+..++.+|+++|||||++|.|+.... .+ ..++..+.+..+.++|++||++++..
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~~iiiitH~~~~~~- 187 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNFQLIVITHDEELVD- 187 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCCEEEEEEecHHHHh-
Confidence 3344566644444 34555668999999999998888887655 44 45666665544779999999998875
Q ss_pred hcC
Q 000778 1156 YKK 1158 (1288)
Q Consensus 1156 ~~~ 1158 (1288)
.++
T Consensus 188 ~~d 190 (204)
T cd03240 188 AAD 190 (204)
T ss_pred hCC
Confidence 355
No 391
>PLN03232 ABC transporter C family member; Provisional
Probab=99.15 E-value=1.6e-10 Score=158.95 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=108.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|.+ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1249 ~~vL~~isl~I-~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1249 PPVLHGLSFFV-SPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred CcccccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 47999999999 8999999999999999999999998531 122335677764211 111
Q ss_pred H--------------HHHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 D--------------RIFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d--------------~i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+ +.+...++.+.+.. +-+.++ +|.++++.+++++.+|++|||||++++.|+..-
T Consensus 1328 ~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te 1407 (1495)
T PLN03232 1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407 (1495)
T ss_pred HHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 1 12233344333322 223466 577778888889999999999999666665533
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.. ....++... .+||+|+++|.++.+.. +| +|.+++.|++++.|+
T Consensus 1408 ~~-Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~D--rIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1408 SL-IQRTIREEF--KSCTMLVIAHRLNTIID-CD--KILVLSSGQVLEYDS 1452 (1495)
T ss_pred HH-HHHHHHHHc--CCCEEEEEeCCHHHHHh-CC--EEEEEECCEEEEECC
Confidence 32 233343332 37999999999988766 55 899999999998774
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=1.4e-10 Score=127.49 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=49.2
Q ss_pred cchHHHHH-HHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1088 STFLTELS-ETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1088 Stf~~e~~-~~~~il~~a----~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
..++..++ +++.+.+++ .+|+++|||||++|.|+.....+ +.++..+. + +.++|++||+.++. ..++ +|
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~-~-~~~~iivs~~~~~~-~~~d--~v 199 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERT-K-NAQFIVISLRNNMF-ELAD--RL 199 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHc-C-CCEEEEEECcHHHH-HhCC--EE
Confidence 44554444 444444443 46899999999999998866544 46666663 2 57899999997654 5666 66
Q ss_pred EEeee
Q 000778 1163 SLCHM 1167 (1288)
Q Consensus 1163 ~~~~~ 1167 (1288)
..++.
T Consensus 200 ~~~~~ 204 (212)
T cd03274 200 VGIYK 204 (212)
T ss_pred EEEEe
Confidence 65544
No 393
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.14 E-value=6.3e-11 Score=120.52 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=68.6
Q ss_pred ccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCccccccc---cccc----
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEI---FEIS---- 1068 (1288)
Q Consensus 1016 ~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~---~~l~---- 1068 (1288)
+++++|.+ .+|++++|+||||+||||||++|++... ..+.-.++|+.. ..+.
T Consensus 1 L~~v~~~i-~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEI-KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEE-ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEE-cCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36788888 7899999999999999999999998542 122223444442 1111
Q ss_pred ----hHHHHHHhcCchhhHhhcc----cchH-HHHHHHHHHHHhCCCCcEEEEeCCC
Q 000778 1069 ----PVDRIFVRMGAKDHIMAGQ----STFL-TELSETALMLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1069 ----~~d~i~~~ig~~d~i~~~~----Stf~-~e~~~~~~il~~a~~~sLvLLDEpg 1116 (1288)
.+..++..++..+...... ..++ +|.++++.+.+++.+|+|+|||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1233455555544333333 6676 5666788888889999999999994
No 394
>PLN03130 ABC transporter C family member; Provisional
Probab=99.14 E-value=2.1e-10 Score=157.86 Aligned_cols=157 Identities=11% Similarity=0.127 Sum_probs=111.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh--------cCcccccccc--ccchHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ--------VGADVPAEIF--EISPVDRI--------- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--------~G~~vPa~~~--~l~~~d~i--------- 1073 (1288)
.++++|++|.+ .+|+.++|+||+||||||||++|+|..-... .-+|||++.- .-++.+.|
T Consensus 630 ~~vL~~inl~i-~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e 708 (1622)
T PLN03130 630 RPTLSNINLDV-PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708 (1622)
T ss_pred CceeeceeEEe-cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence 57899999999 8999999999999999999999998653322 1246666531 11222222
Q ss_pred -----HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1074 -----FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1074 -----~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
....+..+.+.. +-.+++ ++.++++.++++..+++++|||||+++.|+.-+..+...++..+.
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l 788 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL 788 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh
Confidence 222233333321 122345 677789999999999999999999777777766666555555443
Q ss_pred hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.++|+|++||..+.... ++ +|++++.|.++..|+
T Consensus 789 --~~kTvIlVTH~l~~l~~-aD--~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 789 --RGKTRVLVTNQLHFLSQ-VD--RIILVHEGMIKEEGT 822 (1622)
T ss_pred --cCCEEEEEECCHhHHHh-CC--EEEEEeCCEEEEeCC
Confidence 37899999999987654 45 899999999887775
No 395
>PLN03232 ABC transporter C family member; Provisional
Probab=99.13 E-value=1.8e-10 Score=158.30 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=110.6
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhh--------cCcccccccc--ccchHHHH---------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ--------VGADVPAEIF--EISPVDRI--------- 1073 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--------~G~~vPa~~~--~l~~~d~i--------- 1073 (1288)
.++++|++|.+ .+|+.++|+||+||||||||+.|+|..-... .-.|||++.. .-++.|.|
T Consensus 630 ~~vL~~inl~i-~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 630 KPTLSDINLEI-PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 57899999999 8999999999999999999999998543211 1246666531 11222222
Q ss_pred -----HHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1074 -----FVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1074 -----~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
....+..+.+.. +-..++ ++.++++.++++..+|+++|||||+++.|+..+..+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 222233333321 112344 677789999999999999999999777777666666555555442
Q ss_pred hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1137 HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1137 ~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+.|+|++||.++.... +| +|.++..|.++..|+
T Consensus 789 --~~kT~IlvTH~~~~l~~-aD--~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 789 --KGKTRVLVTNQLHFLPL-MD--RIILVSEGMIKEEGT 822 (1495)
T ss_pred --cCCEEEEEECChhhHHh-CC--EEEEEeCCEEEEecC
Confidence 36899999999987654 55 899999999887774
No 396
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.12 E-value=2.4e-10 Score=155.89 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=103.2
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh--------------------------------------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------------------------------------- 1054 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------------------------------------- 1054 (1288)
..|++|++|.+ .+|+.++|+||+||||||++++|.++.-..
T Consensus 1181 ~~vL~~lsl~i-~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1181 VPIYKDLTFSC-DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CccccCeeEEE-cCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999 899999999999999999999999854320
Q ss_pred ---------------hc---------------------Ccccccccc--ccchHHHH---------------HHhcCchh
Q 000778 1055 ---------------QV---------------------GADVPAEIF--EISPVDRI---------------FVRMGAKD 1081 (1288)
Q Consensus 1055 ---------------q~---------------------G~~vPa~~~--~l~~~d~i---------------~~~ig~~d 1081 (1288)
+. -++||++.. .-++.+.| ....++.+
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 11 134555431 11222222 11122223
Q ss_pred hHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1082 HIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1082 ~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
.+.. | -..++ ++.++++.+++++.+|++||||||++..|+.....+ ...|..+....+.|+|++||.
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEech
Confidence 2221 1 12344 677889999999999999999999555555433333 233444421237899999999
Q ss_pred chhhhhhcCCCceEEeee----EEEE-ecCC
Q 000778 1150 HRLAVDYKKDPRVSLCHM----ACQV-GNGV 1175 (1288)
Q Consensus 1150 ~~l~~~~~~~~~v~~~~~----~~~~-~~g~ 1175 (1288)
+..... +| +|+++.. |.++ +.|+
T Consensus 1419 lsti~~-aD--~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1419 IASIKR-SD--KIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred HHHHHh-CC--EEEEEeCCCCCCCEEEEecC
Confidence 987765 55 8888887 7644 5553
No 397
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=2.9e-10 Score=115.86 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH-------HHhhcCcccc---cc--------ccccch-----
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------ILAQVGADVP---AE--------IFEISP----- 1069 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~-------ilaq~G~~vP---a~--------~~~l~~----- 1069 (1288)
-.|.++++|++ ..|+++++-||+|+||||+||++-+.. +.-|.|..+- ++ ...+++
T Consensus 24 LpV~~~vslsV-~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSV-NAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEe-cCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 36889999999 789999999999999999999987522 1111221110 00 001111
Q ss_pred -----------------------------HHHHHHhcCchhhHh-hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 000778 1070 -----------------------------VDRIFVRMGAKDHIM-AGQSTFL-TELSETALMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1070 -----------------------------~d~i~~~ig~~d~i~-~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~G 1118 (1288)
...+++|+...+.+- -..+||+ +|.+++..+...+.+-.++|||||++.
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTas 182 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccc
Confidence 123556666555443 2468999 466666666778999999999999555
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.|....... ..++..- +..|+.++=+-||.+.-...++
T Consensus 183 LDa~Nr~vV-veli~e~-Ka~GaAlvGIFHDeevre~vad 220 (235)
T COG4778 183 LDATNRAVV-VELIREA-KARGAALVGIFHDEEVREAVAD 220 (235)
T ss_pred ccccchHHH-HHHHHHH-HhcCceEEEeeccHHHHHHHhh
Confidence 444434332 3444443 3358888889999998777777
No 398
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.09 E-value=3e-10 Score=156.35 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=107.9
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|++ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1299 ~~vL~~is~~I-~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1299 DLVLRHINVTI-HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred cccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 46999999999 7899999999999999999999998541 222335677764211 111
Q ss_pred HH--------------HHHhcCchhhHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1071 DR--------------IFVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~-----------~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
+. .+...++.+.+. .+-+.|+ +|.++++.+++++.+|++||||||+++.|+..-
T Consensus 1378 ~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te 1457 (1522)
T TIGR00957 1378 MNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457 (1522)
T ss_pred HHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 11 122233333322 1224465 577788888889999999999999666666533
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
. .....++... .+||+|+++|.++.+.. +| +|.+++.|++++.|+
T Consensus 1458 ~-~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~D--rIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1458 N-LIQSTIRTQF--EDCTVLTIAHRLNTIMD-YT--RVIVLDKGEVAEFGA 1502 (1522)
T ss_pred H-HHHHHHHHHc--CCCEEEEEecCHHHHHh-CC--EEEEEECCEEEEECC
Confidence 3 3334444332 37999999999988765 34 899999999998774
No 399
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.8e-10 Score=131.37 Aligned_cols=157 Identities=21% Similarity=0.265 Sum_probs=107.7
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCcccccccccc--
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFEI-- 1067 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~~~l-- 1067 (1288)
.++.++.||+|++ .+|..++|+||+|+||||+||.+-..- +-.++| .||++..-+
T Consensus 549 p~k~vl~disF~v-~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNd 626 (790)
T KOG0056|consen 549 PGKPVLSDISFTV-QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFND 626 (790)
T ss_pred CCCceeecceEEe-cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecc
Confidence 4689999999999 899999999999999999999987521 223455 678765211
Q ss_pred chHHHH-HHhcC--------------chhhHh------------hcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1068 SPVDRI-FVRMG--------------AKDHIM------------AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1068 ~~~d~i-~~~ig--------------~~d~i~------------~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.+++.| |.+.+ ..|.|. +|+..-.+|.++++.+......|++++|||.++..|
T Consensus 627 TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 627 TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 111111 11111 122222 122222378889999999999999999999955555
Q ss_pred hHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
+..-.+|- +.|+.++. +.|.|++.|-+.-+..+ | .|.++..|++++.|.
T Consensus 707 T~tER~IQ-aaL~rlca--~RTtIVvAHRLSTivnA-D--~ILvi~~G~IvErG~ 755 (790)
T KOG0056|consen 707 TNTERAIQ-AALARLCA--NRTTIVVAHRLSTIVNA-D--LILVISNGRIVERGR 755 (790)
T ss_pred CccHHHHH-HHHHHHhc--CCceEEEeeeehheecc-c--EEEEEeCCeEeecCc
Confidence 54445443 56777764 56889999988765442 3 788999999998774
No 400
>PTZ00243 ABC transporter; Provisional
Probab=99.09 E-value=4.7e-10 Score=154.21 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=107.3
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------------------HhhcCcccccccccc--chH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFEI--SPV 1070 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------------------laq~G~~vPa~~~~l--~~~ 1070 (1288)
..|++|++|.+ .+|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.
T Consensus 1323 ~~vL~~vsf~I-~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1323 PLVLRGVSFRI-APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CceeecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 46899999999 7899999999999999999999997541 233345777764211 122
Q ss_pred HH--------------HHHhcCchhhHhh-----------cccchH-HHHHHHHHHHHhCCC-CcEEEEeCCCCCCChHH
Q 000778 1071 DR--------------IFVRMGAKDHIMA-----------GQSTFL-TELSETALMLSSATR-NSLVVLDELGRGTSTSD 1123 (1288)
Q Consensus 1071 d~--------------i~~~ig~~d~i~~-----------~~Stf~-~e~~~~~~il~~a~~-~sLvLLDEpg~GTs~~D 1123 (1288)
+. .+...++.+.+.. +-+.++ ++.++++.+.+++.+ +++||||||+++.|+.-
T Consensus 1402 eNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243 1402 QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred HHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence 21 2223344433321 224566 566677888888885 89999999966666553
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1124 GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1124 g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
-..| ..++.... .++|+|+++|.++.+.. +| +|.+++.|.+++.|+
T Consensus 1482 e~~I-q~~L~~~~--~~~TvI~IAHRl~ti~~-~D--rIlVLd~G~VvE~Gt 1527 (1560)
T PTZ00243 1482 DRQI-QATVMSAF--SAYTVITIAHRLHTVAQ-YD--KIIVMDHGAVAEMGS 1527 (1560)
T ss_pred HHHH-HHHHHHHC--CCCEEEEEeccHHHHHh-CC--EEEEEECCEEEEECC
Confidence 3333 34444432 37999999999987765 45 899999999988774
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.08 E-value=3.9e-10 Score=130.07 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=99.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh------cCccccccc-----ccc---------------chHHHHHHhcC
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ------VGADVPAEI-----FEI---------------SPVDRIFVRMG 1078 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq------~G~~vPa~~-----~~l---------------~~~d~i~~~ig 1078 (1288)
..|++++|+||||-|||||.|+++|..-.-. .-+|-|+-- ..+ .+...|+..+.
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 3579999999999999999999998553211 113333311 110 12234555667
Q ss_pred chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc
Q 000778 1079 AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1079 ~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~ 1157 (1288)
..+-+.+....++ +|+++++.+++++.+.+|.|||||.+-+|.......+ .+++++....+.+.+++-||+-+..+++
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhh
Confidence 7777777777777 7999999999999999999999995444444455444 5667777777899999999999998888
Q ss_pred CCCceEE
Q 000778 1158 KDPRVSL 1164 (1288)
Q Consensus 1158 ~~~~v~~ 1164 (1288)
+ ++.+
T Consensus 524 D--r~iv 528 (591)
T COG1245 524 D--RLIV 528 (591)
T ss_pred c--eEEE
Confidence 7 5443
No 402
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.08 E-value=4.6e-10 Score=126.35 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=51.9
Q ss_pred cchHH-HHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1088 STFLT-ELSETALMLSSAT----RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1088 Stf~~-e~~~~~~il~~a~----~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
..++. +.++++.+..++. +|+++|||||++|.|+.....+. .++..+.+. |.++|++||+.++.. .++ ++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~-g~~vi~isH~~~~~~-~~d--~i 228 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGP-NFQFIVISLKEEFFS-KAD--AL 228 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHH-HHHHHhccC-CcEEEEEECCHHHHh-hCC--eE
Confidence 34443 4444555554443 58999999999999988766554 566666544 789999999988764 466 66
Q ss_pred EEeeeE
Q 000778 1163 SLCHMA 1168 (1288)
Q Consensus 1163 ~~~~~~ 1168 (1288)
..++..
T Consensus 229 ~~~~~~ 234 (247)
T cd03275 229 VGVYRD 234 (247)
T ss_pred EEEEec
Confidence 655543
No 403
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.07 E-value=1.6e-10 Score=95.89 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=38.4
Q ss_pred ccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccCCchhhhccCcceE
Q 000778 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKI 154 (1288)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~ 154 (1288)
-.|.+|++|||+++.||+|.|++||..++.|.|.|+||++ ++|...+|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 4799999999999999999999999999999999999998 45554444
No 404
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.06 E-value=9.6e-10 Score=113.17 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=103.4
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-----------hcCc---------cc---cccc--cc--c
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-----------QVGA---------DV---PAEI--FE--I 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-----------q~G~---------~v---Pa~~--~~--l 1067 (1288)
....|+|+. +.|..++|+|.||||||||.|+|+|++-.. +.|- .+ |..+ .+ +
T Consensus 28 AV~~vSFtL-~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 28 AVKPVSFTL-REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred cccceEEEe-cCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 456678888 778999999999999999999999976210 0110 01 1110 00 1
Q ss_pred c-hHH----------------HHH---HhcCch-hhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 000778 1068 S-PVD----------------RIF---VRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1288)
Q Consensus 1068 ~-~~d----------------~i~---~~ig~~-d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ 1125 (1288)
+ +.| +|| ..+|.. |...-....++ ++.++++.+.+++.+|+++|.||.-.+.|..-..
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 1 011 111 112211 11111111122 5667889999999999999999996655555444
Q ss_pred HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1126 AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1126 aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+. .+.-+|.++.|...|.+|.++.....+++ .|.+||.|.+++.|+
T Consensus 187 Ql~-NL~LeLQek~GiSyiYV~QhlG~iKHi~D--~viVM~EG~vvE~G~ 233 (267)
T COG4167 187 QLI-NLMLELQEKQGISYIYVTQHIGMIKHISD--QVLVMHEGEVVERGS 233 (267)
T ss_pred HHH-HHHHHHHHHhCceEEEEechhhHhhhhcc--cEEEEecCceeecCC
Confidence 443 34445777789999999999999999998 999999999998774
No 405
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=6.1e-10 Score=136.09 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------------------HHhhcCccccccc--cccch
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI--FEISP 1069 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------------------ilaq~G~~vPa~~--~~l~~ 1069 (1288)
+..|++|++|++ .+|++++|+||||+||||+...|-.+. .+.+.-.+|-++. ..-++
T Consensus 480 ~~~Vlk~lsfti-~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 480 DVPVLKNLSFTI-RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred CchhhcCceeee-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 457999999999 899999999999999999999887532 2222223443332 11122
Q ss_pred HHHHHHh---------------cCchhhHhh---c--------ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 000778 1070 VDRIFVR---------------MGAKDHIMA---G--------QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1070 ~d~i~~~---------------ig~~d~i~~---~--------~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
.++|.-. -++.+.|.. + -+.++ ++.+++|.+.++..+|.+|||||- ||.+
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEA---TSAL 635 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEA---TSAL 635 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEech---hhhc
Confidence 3333111 111222211 1 12334 566789999999999999999999 8888
Q ss_pred HHHH--HHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1123 DGQA--IAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1123 Dg~a--ia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
|+.+ +....|..+.+ +.|||++.|-+..++... .|++++.|++++.|+
T Consensus 636 DaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad---~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHAD---QIVVIDKGRVVEMGT 685 (716)
T ss_pred chhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhhcc---EEEEEcCCeEEeccc
Confidence 8543 33344544443 579999999999887643 799999999998874
No 406
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.6e-10 Score=133.58 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCcccceecCCCCCCCCeEEEecCCCCccccccC
Q 000778 930 ESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSL 1009 (1288)
Q Consensus 930 ~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~rHP~l~~~~l 1009 (1288)
+...+.+++.++.+|+=....-..+...|+.|+-+-++-..-......+..|+- .+-..||++....+
T Consensus 301 q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~------------~e~~~~p~l~i~~V 368 (582)
T KOG0062|consen 301 QMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTE------------GEVLSPPNLRISYV 368 (582)
T ss_pred HHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCC------------CCcCCCCeeEEEee
Confidence 344456777788777533333334555555554332221111100111122211 12235776654322
Q ss_pred C----CCc-ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccc----------------
Q 000778 1010 G----KGE-FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS---------------- 1068 (1288)
Q Consensus 1010 ~----~~~-~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~---------------- 1068 (1288)
. .+. .+...++++. +....++++|+||.||||++|.+.+-.- +..|...-...-++.
T Consensus 369 ~f~y~p~~y~~~~~~~~d~-e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~ 446 (582)
T KOG0062|consen 369 AFEYTPSEYQWRKQLGLDR-ESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRHPRLRIKYFAQHHVDFLDKNVNA 446 (582)
T ss_pred eccCCCcchhhhhccCCcc-chhhhhheeccCchhHHHHHHHHhccCC-cccceeeecccceecchhHhhhhHHHHHhHH
Confidence 2 122 3445566655 4456689999999999999999886110 001100000000000
Q ss_pred --------------hHHHHHHhcCchhhH-hhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 000778 1069 --------------PVDRIFVRMGAKDHI-MAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVL 1132 (1288)
Q Consensus 1069 --------------~~d~i~~~ig~~d~i-~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~ail 1132 (1288)
-+.+-+.++|+.-.+ .....++++ +..+++.+.....+|.||+|||| |+++|..++- |+.
T Consensus 447 vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP---TNhLD~dsl~-AL~ 522 (582)
T KOG0062|consen 447 VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP---TNHLDRDSLG-ALA 522 (582)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC---CccccHHHHH-HHH
Confidence 122335566765444 334566774 44577777778899999999999 9999988764 666
Q ss_pred HHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEE
Q 000778 1133 EHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1133 e~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
+.| +.++..||+|||+.+++..+|. .+.++..|.
T Consensus 523 ~Al-~~F~GGVv~VSHd~~fi~~~c~--E~Wvve~g~ 556 (582)
T KOG0062|consen 523 KAL-KNFNGGVVLVSHDEEFISSLCK--ELWVVEDGK 556 (582)
T ss_pred HHH-HhcCCcEEEEECcHHHHhhcCc--eeEEEcCCc
Confidence 666 4567889999999999998887 665555553
No 407
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.06 E-value=7.1e-10 Score=124.31 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred cccchHHHH-HHHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCC
Q 000778 1086 GQSTFLTEL-SETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1086 ~~Stf~~e~-~~~~~il~~a----~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~ 1160 (1288)
...++++++ ++++.+.+++ .+|+++|||||++|.|+.....+. ..+..+.+ +.++|++||..++ ..+++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~--~~~ii~~~h~~~~-~~~~d-- 228 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD--GAQFITTTFRPEL-LEVAD-- 228 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC--CCEEEEEecCHHH-HhhCC--
Confidence 345566544 4455555553 468999999999999988655543 45555533 6788888888765 45676
Q ss_pred ceEEeee
Q 000778 1161 RVSLCHM 1167 (1288)
Q Consensus 1161 ~v~~~~~ 1167 (1288)
++..+..
T Consensus 229 ~i~~l~~ 235 (243)
T cd03272 229 KFYGVKF 235 (243)
T ss_pred EEEEEEE
Confidence 5555443
No 408
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.03 E-value=6.3e-10 Score=122.33 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHHH-----hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC-cEEEEEcCCchhhhhhcCCC
Q 000778 1087 QSTFLTELSETALMLS-----SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ-CRGLFSTHYHRLAVDYKKDP 1160 (1288)
Q Consensus 1087 ~Stf~~e~~~~~~il~-----~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~-~~vl~~TH~~~l~~~~~~~~ 1160 (1288)
..++++.+++.+.+.. .+.+|.++|+|||++|+|+.....+. .++..+.++.+ .++|++||++......++.-
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 3456666666544332 36899999999999999998766654 55555554424 57999999987666666544
Q ss_pred ceEEeeeE
Q 000778 1161 RVSLCHMA 1168 (1288)
Q Consensus 1161 ~v~~~~~~ 1168 (1288)
+|.+++.|
T Consensus 203 ~v~~l~~g 210 (213)
T cd03277 203 TVLCVYNG 210 (213)
T ss_pred EEEEEecC
Confidence 55555544
No 409
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.01 E-value=1.5e-09 Score=116.06 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=70.5
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHh-------------hcCccccccccccchH-HH-HHHhcCchhhHhhcccchHHH
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILA-------------QVGADVPAEIFEISPV-DR-IFVRMGAKDHIMAGQSTFLTE 1093 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ila-------------q~G~~vPa~~~~l~~~-d~-i~~~ig~~d~i~~~~Stf~~e 1093 (1288)
+.+|+||||+|||++|..|+...... ..+...++..+.+.+. +. ++.-. -.++ ..-+|. ++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~-~~~~-~~~LS~--Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVL-QGKV-EQILSG--GE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEec-CCcC-cccCCH--HH
Confidence 89999999999999999998532110 0000011111111110 00 00000 0011 111222 34
Q ss_pred HHHHHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1094 LSETALMLSS----ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1094 ~~~~~~il~~----a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
.++++.+..+ ..+|+++|+|||++|.|+.....+. .++..+.+. ++++|++||++++.. .++
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~-g~tiIiiSH~~~~~~-~ad 165 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKH-TSQFIVITLKKEMFE-NAD 165 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEECCHHHHh-hCC
Confidence 4444444333 3789999999999999988766555 456666554 789999999998775 344
No 410
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.00 E-value=2.6e-09 Score=120.53 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=48.4
Q ss_pred ccchHHHHH-HHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCc
Q 000778 1087 QSTFLTELS-ETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR 1161 (1288)
Q Consensus 1087 ~Stf~~e~~-~~~~il~~a----~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~ 1161 (1288)
...+++.++ +++.+..++ .+|.++|||||++|+|+.....+. .++..+. + |.++|++||..++... ++ +
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~-g~~ii~iSH~~~~~~~-~d--~ 237 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-K-GSQFIVVSLKEGMFNN-AN--V 237 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-C-CCEEEEEECCHHHHHh-CC--E
Confidence 445554444 344444333 678999999998888888766544 4555553 3 6789999999776664 55 5
Q ss_pred eEEee
Q 000778 1162 VSLCH 1166 (1288)
Q Consensus 1162 v~~~~ 1166 (1288)
|+...
T Consensus 238 v~~~~ 242 (251)
T cd03273 238 LFRTR 242 (251)
T ss_pred EEEEE
Confidence 54433
No 411
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.97 E-value=2.6e-09 Score=121.89 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=101.1
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh-------hcC----------ccccccc----cccchHH
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA-------QVG----------ADVPAEI----FEISPVD 1071 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-------q~G----------~~vPa~~----~~l~~~d 1071 (1288)
.++..|++|.+ .+|++++|+|++|+||||+||+|+|...-- ..| ..+|.+. ....+.+
T Consensus 396 ryvlr~vNL~i-kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 396 RYVLRNLNLEI-KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeceeeEe-cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 57899999998 789999999999999999999999855311 011 1223221 1223444
Q ss_pred HH-------------HHhcCchhhHhhc--ccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 000778 1072 RI-------------FVRMGAKDHIMAG--QSTFLTELSETAL-MLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHF 1135 (1288)
Q Consensus 1072 ~i-------------~~~ig~~d~i~~~--~Stf~~e~~~~~~-il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l 1135 (1288)
++ +.+.|+.|.+..- .+.++.+.++-+. +..++..|++++.||.++-.|+..+..+|..+- .|
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkis-el 553 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKIS-EL 553 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHH-HH
Confidence 44 4444544444321 2233333333333 333468999999999988888888887776554 46
Q ss_pred HhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1136 VHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1136 ~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+++.|.|++++||..++...+.-+ .+.+.+.|
T Consensus 554 aRe~giTlivvThrpEv~~AL~PD-~li~vgYg 585 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNALRPD-TLILVGYG 585 (593)
T ss_pred HHHhCCeEEEEecCHHHHhccCCc-eeEEeecc
Confidence 677899999999999998877431 44444444
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=2.9e-09 Score=137.97 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred HhhcccchHH-HHHHHHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1083 IMAGQSTFLT-ELSETALMLSSAT---RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1083 i~~~~Stf~~-e~~~~~~il~~a~---~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+.+...++++ |.+++..+..++. +|.|+|||||++|+++.+...+. .++..+.+. |.++|++||+++++. .++
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~-G~TVIvi~H~~~~i~-~aD 898 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQ-GNTVVVIEHNLDVIK-TAD 898 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCHHHHH-hCC
Confidence 4455667774 4455666666654 58999999999999999877665 566667654 889999999999875 466
Q ss_pred CCceEEe------eeEEEEecC
Q 000778 1159 DPRVSLC------HMACQVGNG 1174 (1288)
Q Consensus 1159 ~~~v~~~------~~~~~~~~g 1174 (1288)
+|+.+ +.|.++..|
T Consensus 899 --~ii~Lgp~~G~~gG~iv~~G 918 (924)
T TIGR00630 899 --YIIDLGPEGGDGGGTIVASG 918 (924)
T ss_pred --EEEEecCCccCCCCEEEEeC
Confidence 77777 456666554
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.5e-09 Score=123.60 Aligned_cols=138 Identities=22% Similarity=0.194 Sum_probs=79.3
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHH-hcCch----------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV-RMGAK---------- 1080 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~-~ig~~---------- 1080 (1288)
.++....++|++ +-...++|+||||.||||||+.+.|-.- .+.|-.--....++++||+-.. .+..+
T Consensus 599 qkpLFkkldFGi-DmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~ 676 (807)
T KOG0066|consen 599 QKPLFKKLDFGI-DMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK 676 (807)
T ss_pred CCchhhcccccc-cccceeEEECCCCccHHHHHHHHhcCCC-CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh
Confidence 356667777877 4556799999999999999999886321 1112111111233444443211 11111
Q ss_pred -----hhHhhcccch--------------HH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccC
Q 000778 1081 -----DHIMAGQSTF--------------LT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQ 1140 (1288)
Q Consensus 1081 -----d~i~~~~Stf--------------~~-e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~ 1140 (1288)
+.....+.+| ++ +..+++.+--.+..|++|||||| |+.+|..+|- ++-+.+. .+.
T Consensus 677 FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP---TNNLDIESID-ALaEAIn-ey~ 751 (807)
T KOG0066|consen 677 FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP---TNNLDIESID-ALAEAIN-EYN 751 (807)
T ss_pred cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC---CCCcchhhHH-HHHHHHH-hcc
Confidence 1111112222 22 33344444345689999999999 6666655543 4444443 346
Q ss_pred cEEEEEcCCchhhhhh
Q 000778 1141 CRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1141 ~~vl~~TH~~~l~~~~ 1156 (1288)
..||+||||-.++...
T Consensus 752 GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 752 GGVIMVSHDERLIVET 767 (807)
T ss_pred CcEEEEecccceeeec
Confidence 7899999998776543
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.96 E-value=3.7e-09 Score=137.18 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=63.7
Q ss_pred HhhcccchHH-HHHHHHHHHHhCCCC---cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1083 IMAGQSTFLT-ELSETALMLSSATRN---SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1083 i~~~~Stf~~-e~~~~~~il~~a~~~---sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+.+...++++ |.+++..+..++.+| .|+|||||++|.++.+...+. .++..+.+. |.++|++||+++++. .++
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~-G~TVIiitH~~~~i~-~aD 900 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDK-GNTVVVIEHNLDVIK-TAD 900 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHH-hCC
Confidence 3444566774 556667777777777 999999999999999877665 566667654 889999999999875 466
Q ss_pred CCceEEe------eeEEEEecC
Q 000778 1159 DPRVSLC------HMACQVGNG 1174 (1288)
Q Consensus 1159 ~~~v~~~------~~~~~~~~g 1174 (1288)
+|+.+ +.|.++..|
T Consensus 901 --~ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 901 --WIIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred --EEEEecCCcCCCCCEEEEeC
Confidence 77776 345555443
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.95 E-value=3.3e-09 Score=143.17 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=65.9
Q ss_pred cCchhh-HhhcccchHH-HHHHHHHHHHhC---CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch
Q 000778 1077 MGAKDH-IMAGQSTFLT-ELSETALMLSSA---TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1077 ig~~d~-i~~~~Stf~~-e~~~~~~il~~a---~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
+|..+. +.+...++++ |.++++.+..++ .+|+|+|||||++|.++.+...+. .++..+.+. |.++|++||+++
T Consensus 796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~-G~TVIiIsHdl~ 873 (1809)
T PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQ-GHTVVIIEHNMH 873 (1809)
T ss_pred cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHH
Confidence 444332 3445566664 445555555554 699999999999999999877655 567777654 889999999999
Q ss_pred hhhhhcCCCceEEee------eEEEEecC
Q 000778 1152 LAVDYKKDPRVSLCH------MACQVGNG 1174 (1288)
Q Consensus 1152 l~~~~~~~~~v~~~~------~~~~~~~g 1174 (1288)
++ ..++ ++..+. .|.++..|
T Consensus 874 ~i-~~aD--rVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 874 VV-KVAD--YVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HH-HhCC--EEEEEccCCCCCCCEEEEeC
Confidence 88 6677 777774 45665554
No 416
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=124.05 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=91.7
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH--------Hhhc-Cccccccc----c-------------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------LAQV-GADVPAEI----F------------- 1065 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i--------laq~-G~~vPa~~----~------------- 1065 (1288)
+....++++|.+ .+|+.+.|+||||+|||||+|+|+|+-- .++. -.|+|+.. .
T Consensus 405 ~~~ll~~l~~~v-~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 405 GQTLLSELNFEV-RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCeeeccceeee-CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 457888999998 7899999999999999999999999642 2111 13444431 0
Q ss_pred ccc--hHHHHHHhcCchhhHhh------cccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 000778 1066 EIS--PVDRIFVRMGAKDHIMA------GQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFV 1136 (1288)
Q Consensus 1066 ~l~--~~d~i~~~ig~~d~i~~------~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~ 1136 (1288)
.++ .+-+++..+|..+-+.. ....++ +|.++++.+.-+.++|++++|||- |+.+|...-. .+.+.+.
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA---TsALDe~~e~-~l~q~l~ 559 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA---TSALDEETED-RLYQLLK 559 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc---hhccChHHHH-HHHHHHH
Confidence 000 11234444454433222 112222 788999999989999999999999 5555533211 2333332
Q ss_pred hc-cCcEEEEEcCCchhhhhhcC
Q 000778 1137 HK-VQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1137 ~~-~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
++ .++++|.|.|-..+-.....
T Consensus 560 ~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 560 EELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred hhCCCCEEEEeccchhhHHHHhh
Confidence 22 58999999999887665443
No 417
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.6e-08 Score=115.00 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=111.9
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC------ccccccc-
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG------ADVPAEI- 1064 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G------~~vPa~~- 1064 (1288)
..|++++.|-...+. .|-.+.|++++ .+|+++-|+|.|||||||+++.+.|+.- .|.| -+|-++.
T Consensus 321 ~~lelrnvrfay~~~------~FhvgPiNl~i-krGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQDN------AFHVGPINLTI-KRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccCcc------cceecceeeEE-ecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCH
Confidence 458888888766543 37788888888 7899999999999999999999998553 2333 2332222
Q ss_pred -cccchHHHHHHhcCc------------hhhHhhcc-------------cchH------HHHHHHHHHHHhCCCCcEEEE
Q 000778 1065 -FEISPVDRIFVRMGA------------KDHIMAGQ-------------STFL------TELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1065 -~~l~~~d~i~~~ig~------------~d~i~~~~-------------Stf~------~e~~~~~~il~~a~~~sLvLL 1112 (1288)
-.-..|..||++.-. .+.+...+ ..|+ ++.++++.+++++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 112334444443321 12222211 1121 678899999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1113 DEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
||-.+--||.=..-.-..+|-.+ ++.|.||+.+|||-.-... +| ++..+..|.+++
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~L-K~qGKTI~aIsHDd~YF~~-AD--rll~~~~G~~~e 528 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLL-KEQGKTIFAISHDDHYFIH-AD--RLLEMRNGQLSE 528 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHH-HHhCCeEEEEecCchhhhh-HH--HHHHHhcCceee
Confidence 99988888876554444555555 5569999999998654322 22 555566665553
No 418
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.83 E-value=7.5e-09 Score=108.59 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=111.5
Q ss_pred CCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH----------------------------
Q 000778 1000 GHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------------- 1051 (1288)
Q Consensus 1000 rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------------- 1051 (1288)
||-.++.+.-.+.--+...++++. ..|++-+++|.+|||||-..|.|+++.
T Consensus 7 rnL~IE~~TsqG~vK~VD~v~ltl-nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 7 RNLTIEFKTSQGWVKAVDRVSMTL-NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred cceEEEEecCCCceEeeeeeeeee-ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 455555443223345677899998 789999999999999999999999843
Q ss_pred HHhhcC---------ccccccccc-------------------cch----HHHHHHhcCchhhHhhcccch----HHHHH
Q 000778 1052 ILAQVG---------ADVPAEIFE-------------------ISP----VDRIFVRMGAKDHIMAGQSTF----LTELS 1095 (1288)
Q Consensus 1052 ilaq~G---------~~vPa~~~~-------------------l~~----~d~i~~~ig~~d~i~~~~Stf----~~e~~ 1095 (1288)
+.++-- |.-|.+... +++ .-.++-++|..|.-.--.|.- .+|-+
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 111111 111211100 000 012455666554332211111 14555
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g 1174 (1288)
.+..+++.|..|.|+|.|||+....+..... ...+|..+.+..+.++|+++||+......++ ++.+++.|..++.+
T Consensus 166 KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~Q-ifRLLs~mNQn~~TtILL~s~Dl~~is~W~d--~i~VlYCGQ~~ESa 241 (330)
T COG4170 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQ-IFRLLSRLNQNSNTTILLISHDLQMISQWAD--KINVLYCGQTVESA 241 (330)
T ss_pred eeeeehhhccCCceEeccCCCcccCccHHHH-HHHHHHHhhccCCceEEEEcccHHHHHHHhh--heEEEEeccccccc
Confidence 6667777899999999999955555554433 3467777777778899999999999999999 88888888776654
No 419
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=118.18 Aligned_cols=133 Identities=19% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH----------------------------------------hhcCcccccc-
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL----------------------------------------AQVGADVPAE- 1063 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il----------------------------------------aq~G~~vPa~- 1063 (1288)
.+|.+++|+||||-||||.+|.++|.... .|.--++|..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57899999999999999999999984321 0100111211
Q ss_pred ----------ccccchHHHHHHhcCchhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH---HHHHHH
Q 000778 1064 ----------IFEISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD---GQAIAE 1129 (1288)
Q Consensus 1064 ----------~~~l~~~d~i~~~ig~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D---g~aia~ 1129 (1288)
....+.+|.+..+++...-+.+..+.++ +|+++++.+..++.+.++.++||| |+.+| ....|
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp---sSyLDi~qRl~~a- 253 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP---SSYLDIRQRLNAA- 253 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC---cccccHHHHHHHH-
Confidence 0123567778888888888888888888 799999999999999999999999 77777 33333
Q ss_pred HHHHHHHhccCcEEEEEcCCchhhhhhcCCCce
Q 000778 1130 SVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRV 1162 (1288)
Q Consensus 1130 aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v 1162 (1288)
.++..|++. +.+||++.||+.....+++.-+|
T Consensus 254 r~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI 285 (591)
T COG1245 254 RVIRELAED-GKYVIVVEHDLAVLDYLSDFVHI 285 (591)
T ss_pred HHHHHHhcc-CCeEEEEechHHHHHHhhheeEE
Confidence 566777765 78999999999999988884333
No 420
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.81 E-value=1.9e-08 Score=105.68 Aligned_cols=167 Identities=20% Similarity=0.177 Sum_probs=102.3
Q ss_pred eEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH----hhcC-----------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----AQVG----------- 1057 (1288)
Q Consensus 993 ~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il----aq~G----------- 1057 (1288)
.|++.+++--+-. ..++.-|+++.. +.|...+++|.||+|||||||.++|-.+. -|.+
T Consensus 13 aievsgl~f~y~~------~dP~~~Dfnldl-p~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV------SDPIFFDFNLDL-PAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred eEEEeccEEeccc------CCceEEEEeecc-CCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 4666666543322 237788999998 77889999999999999999999983211 0000
Q ss_pred -----cccccc-------cc------ccchHHHHHHhcCc----hhhHhh----c----ccchH-HHHHHHHHHHHhCCC
Q 000778 1058 -----ADVPAE-------IF------EISPVDRIFVRMGA----KDHIMA----G----QSTFL-TELSETALMLSSATR 1106 (1288)
Q Consensus 1058 -----~~vPa~-------~~------~l~~~d~i~~~ig~----~d~i~~----~----~Stf~-~e~~~~~~il~~a~~ 1106 (1288)
+|+-.+ .. .++...-||.--|. .+.+.. . +...+ ++.+++...+.+..+
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 111100 01 11211222221111 011110 0 11112 566667777778899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHH---hccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFV---HKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~---~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
-.++||||. |--+|..|.+ .+|+.|. +..||||+.+||-.+=...... +++.+..|.++.
T Consensus 166 fkVLLLDEV---TVDLDVlARa-dLLeFlkeEce~RgatIVYATHIFDGLe~Wpt--hl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEV---TVDLDVLARA-DLLEFLKEECEQRGATIVYATHIFDGLETWPT--HLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeee---EeehHHHHHH-HHHHHHHHHHhhcCcEEEEEeeeccchhhcch--hEEEecCCeeee
Confidence 999999999 7777766554 4566654 3469999999998886666666 677777776654
No 421
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.80 E-value=2.4e-08 Score=128.89 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=105.9
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------HHhhcCccccccc--cccc
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI--FEIS 1068 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------ilaq~G~~vPa~~--~~l~ 1068 (1288)
+..|.+|++|++ ..|+.++|+||+||||||.+-+|-... +-.|+| .|.++. ...+
T Consensus 1002 ~~~Il~~l~l~i-~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVsQEP~LF~~T 1079 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSI-RAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVSQEPVLFNGT 1079 (1228)
T ss_pred CchhhcCCcEEe-cCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eeccCchhhccc
Confidence 468999999999 889999999999999999998876421 223333 344443 1122
Q ss_pred hHHHHHHh-c--------------CchhhH---hhcc--------cchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 000778 1069 PVDRIFVR-M--------------GAKDHI---MAGQ--------STFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1288)
Q Consensus 1069 ~~d~i~~~-i--------------g~~d~i---~~~~--------Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~ 1121 (1288)
+.+.|.-- - ++.+.+ -+|. ..++ ++.+|+|.++++..+|++|||||- ||.
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEA---TSA 1156 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEA---TSA 1156 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeecc---chh
Confidence 33333211 0 011111 1111 1233 567789999999999999999999 777
Q ss_pred HHHH--HHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1122 SDGQ--AIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1122 ~Dg~--aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
+|.. .+....|+.+. .|.|+|+++|-+..... +| .|.+++.|.+++.|+.
T Consensus 1157 LDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD--~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-AD--VIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred hhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CC--EEEEEECCEEEecccH
Confidence 7743 34445566653 37899999999987765 34 7999999999999863
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.75 E-value=1e-07 Score=125.86 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=120.2
Q ss_pred CCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-----hhcC--ccccc
Q 000778 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----AQVG--ADVPA 1062 (1288)
Q Consensus 990 ~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-----aq~G--~~vPa 1062 (1288)
..+.+.++++.-..-. ......++||+|.+ .+|..++|+||-|||||+||.+|.|-.-+ .-.| +|||+
T Consensus 515 ~~~~i~i~~~sfsW~~----~~~~~tL~dIn~~i-~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q 589 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDS----ESPEPTLKDINFEI-KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQ 589 (1381)
T ss_pred CCceEEEeeeeEecCC----CCCcccccceeEEe-cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEecc
Confidence 3456777777543321 12345899999999 89999999999999999999999873321 1112 56776
Q ss_pred cc--cccchHHHH--------------HHhcCc---------hhhHhhc--ccchH-HHHHHHHHHHHhCCCCcEEEEeC
Q 000778 1063 EI--FEISPVDRI--------------FVRMGA---------KDHIMAG--QSTFL-TELSETALMLSSATRNSLVVLDE 1114 (1288)
Q Consensus 1063 ~~--~~l~~~d~i--------------~~~ig~---------~d~i~~~--~Stf~-~e~~~~~~il~~a~~~sLvLLDE 1114 (1288)
.. ..-++-|+| ...-.. .|.-.-| --+++ ++.+|++.+++.-.+.++.|||-
T Consensus 590 ~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred ccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 53 111222222 211122 2211111 23344 56678888888889999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCCCC
Q 000778 1115 LGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGG 1177 (1288)
Q Consensus 1115 pg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~ 1177 (1288)
|.+..|..-|..|...++..+.+ +.|+|++||.+++... ++ .|.+++.|.+...|+++
T Consensus 670 plSAVDahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~~-ad--~Iivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLPH-AD--QIIVLKDGKIVESGTYE 727 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhhh-CC--EEEEecCCeEecccCHH
Confidence 97777766688887777765543 5799999998776655 33 79999999999988653
No 423
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.74 E-value=5.7e-08 Score=116.71 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=108.8
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH---------------------HhhcCccccccccc------c
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIFE------I 1067 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i---------------------laq~G~~vPa~~~~------l 1067 (1288)
...|++|++ .+|++++|.|-=|+|+|-++++|.|+-- +.+--.|||.+... .
T Consensus 274 ~~~dvSf~v-r~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTV-RAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEE-eCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 356888998 7899999999999999999999998321 12222466655422 1
Q ss_pred chHHHH----HH----------------------hcCch-hhHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1068 SPVDRI----FV----------------------RMGAK-DHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1068 ~~~d~i----~~----------------------~ig~~-d~i~~~~Stf~~-e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
++.+++ +. +++.. -+.....+++|+ ..+.+.....++++|++|||||||||.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 111111 10 11100 111123455554 444556666678999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEec
Q 000778 1120 STSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGN 1173 (1288)
Q Consensus 1120 s~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 1173 (1288)
|.-.-.. .+.++..|+.+ |..||++|-+++.+..+|| +|.+|+.|.++..
T Consensus 433 DVGAK~e-Iy~li~~lA~~-G~ail~iSSElpEll~~~D--RIlVm~~Gri~~e 482 (500)
T COG1129 433 DVGAKAE-IYRLIRELAAE-GKAILMISSELPELLGLSD--RILVMREGRIVGE 482 (500)
T ss_pred ccchHHH-HHHHHHHHHHC-CCEEEEEeCChHHHHhhCC--EEEEEECCEEEEE
Confidence 9885554 46889999876 8999999999999999999 9999999998863
No 424
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.70 E-value=1e-07 Score=111.83 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=89.5
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH---------hhcCccccccc-cccc-hHHH--------
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------AQVGADVPAEI-FEIS-PVDR-------- 1072 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il---------aq~G~~vPa~~-~~l~-~~d~-------- 1072 (1288)
++++.+.++|.+ .+|..++||||||||||+|+|.++|+--. .+.-.|+|+.. ...+ +.|+
T Consensus 494 ~~vvv~~Ltf~i-~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e 572 (728)
T KOG0064|consen 494 GDVLVPKLTFQI-EPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSE 572 (728)
T ss_pred cceeecceeEEe-cCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHH
Confidence 467888899998 78999999999999999999999996522 22234556542 1111 1121
Q ss_pred --------------HHHhcCchhhHhhcccch----------H-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 000778 1073 --------------IFVRMGAKDHIMAGQSTF----------L-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1288)
Q Consensus 1073 --------------i~~~ig~~d~i~~~~Stf----------~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~ai 1127 (1288)
|+..+.. +.+.+..+.| + +|.++++.+...-++|...+|||-++..+..-
T Consensus 573 ~~~~kg~~d~dL~~iL~~v~L-~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv---- 647 (728)
T KOG0064|consen 573 QMKRKGYTDQDLEAILDIVHL-EHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV---- 647 (728)
T ss_pred HHHhcCCCHHHHHHHHHHhhH-HHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch----
Confidence 1111111 1222222222 2 67778888888889999999999955555431
Q ss_pred HHHHHHHHHhccCcEEEEEcCCchhhhhh
Q 000778 1128 AESVLEHFVHKVQCRGLFSTHYHRLAVDY 1156 (1288)
Q Consensus 1128 a~aile~l~~~~~~~vl~~TH~~~l~~~~ 1156 (1288)
-..+.+ .++..|.+.|-+||-..+-...
T Consensus 648 E~~i~~-~ak~~gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 648 EGKIFQ-AAKDAGISLLSITHRPSLWKYH 675 (728)
T ss_pred HHHHHH-HHHhcCceEEEeecCccHHHHH
Confidence 123444 3456799999999999887653
No 425
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.70 E-value=3.7e-07 Score=108.94 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=100.8
Q ss_pred CeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH--------h----hcCcc
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------A----QVGAD 1059 (1288)
Q Consensus 992 ~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il--------a----q~G~~ 1059 (1288)
+.|++.+. |+.... .+..+..+++|.+ ..|..++||||||+|||+|||.+|++--. + .--.|
T Consensus 432 n~i~~e~v--~l~tPt---~g~~lie~Ls~~V-~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lff 505 (659)
T KOG0060|consen 432 NAIEFEEV--SLSTPT---NGDLLIENLSLEV-PSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505 (659)
T ss_pred ceEEeeee--eecCCC---CCceeeeeeeeEe-cCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEE
Confidence 45666532 343331 2567888899999 78999999999999999999999986531 1 11245
Q ss_pred ccccc-cccc-hH-------------------------------HHHHHhcCchh--hHhhcccchH-HHHHHHHHHHHh
Q 000778 1060 VPAEI-FEIS-PV-------------------------------DRIFVRMGAKD--HIMAGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1060 vPa~~-~~l~-~~-------------------------------d~i~~~ig~~d--~i~~~~Stf~-~e~~~~~~il~~ 1103 (1288)
||+.. ..++ +- ..|..|.|--| ....+..+++ +|+++++.+.-.
T Consensus 506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 66643 1111 00 11233333322 3333445555 899999999988
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
.++|.+.||||- |+..+-. .-.++-+.+ ++.|.|.|-|.|-..+...
T Consensus 586 y~kPk~AiLDE~---TSAv~~d-vE~~~Yr~~-r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 586 YHKPKFAILDEC---TSAVTED-VEGALYRKC-REMGITFISVGHRKSLWKF 632 (659)
T ss_pred hcCCceEEeech---hhhccHH-HHHHHHHHH-HHcCCeEEEeccHHHHHhh
Confidence 999999999999 6666422 222444444 4459999999999888765
No 426
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6e-09 Score=118.81 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1096 ~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+++.+.++...|.||.|||| |+++|--++.| +-.|| .....|.|+|+||..+....|.
T Consensus 420 RvSLARALflEPTLLMLDEP---TNHLDLNAVIW-LdNYL-QgWkKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEP---TNHLDLNAVIW-LDNYL-QGWKKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred ehhHHHHHhcCceeeeecCC---ccccccceeee-hhhHH-hhhhheeEEEecccchHHHHHH
Confidence 45677778899999999999 99999877776 33444 5567899999999999888876
No 427
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=2.7e-08 Score=128.36 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=95.9
Q ss_pred CCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH-------------------hhcCccccccc---ccc-
Q 000778 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEI---FEI- 1067 (1288)
Q Consensus 1011 ~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il-------------------aq~G~~vPa~~---~~l- 1067 (1288)
+...+++||+=-. .+|-+.+|+|++||||||||+.|++-..+ +..-.||-+.. +.+
T Consensus 802 ~~~qLL~~V~G~~-kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAF-KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEe-cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 3467888888666 67899999999999999999999974311 11112222211 111
Q ss_pred -----------------------chHHHHHHhcCch---hhHhhc-ccchHHHHH-HHHHHHHhCCCC-cEEEEeCCCCC
Q 000778 1068 -----------------------SPVDRIFVRMGAK---DHIMAG-QSTFLTELS-ETALMLSSATRN-SLVVLDELGRG 1118 (1288)
Q Consensus 1068 -----------------------~~~d~i~~~ig~~---d~i~~~-~Stf~~e~~-~~~~il~~a~~~-sLvLLDEpg~G 1118 (1288)
.+++.+..-++.. |.+-.. -+.++.|.+ ++.....++.+| +||+||||++|
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 1233333333332 111110 022344443 333444577888 99999999777
Q ss_pred CChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhh-hhcCCCceEEe-eeEEEEecCC
Q 000778 1119 TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAV-DYKKDPRVSLC-HMACQVGNGV 1175 (1288)
Q Consensus 1119 Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~-~~~~~~~v~~~-~~~~~~~~g~ 1175 (1288)
.|...+. +...+++.|++ .|.+||.+-|.+.... +..| ++.++ ..|..+..|+
T Consensus 961 LDsqaA~-~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD--~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 961 LDSQAAA-IVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFD--ELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred ccHHHHH-HHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHh--HHHHHhcCCeEEEecC
Confidence 7777444 44577888877 4899999999987432 2233 55444 3455555554
No 428
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.3e-07 Score=105.90 Aligned_cols=152 Identities=23% Similarity=0.220 Sum_probs=101.2
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH--------H------------HhhcCccccccccccchHH
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------I------------LAQVGADVPAEIFEISPVD 1071 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~--------i------------laq~G~~vPa~~~~l~~~d 1071 (1288)
..+++++++|++ ..|..++|+||.|+||||++|.+-... + +-..-..||++..-+ -|
T Consensus 275 ~r~iL~~isf~i-~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF--ND 351 (497)
T COG5265 275 RRPILNGISFTI-PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF--ND 351 (497)
T ss_pred cchhhcCccccc-cCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh--hh
Confidence 468999999999 889999999999999999999987532 1 111223466654211 12
Q ss_pred HHHHhc-----Cc--------------hhhHhhc---------ccch---HHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 000778 1072 RIFVRM-----GA--------------KDHIMAG---------QSTF---LTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1288)
Q Consensus 1072 ~i~~~i-----g~--------------~d~i~~~---------~Stf---~~e~~~~~~il~~a~~~sLvLLDEpg~GTs 1120 (1288)
.++-.+ .+ .+.+... .-.| .+|.++++.+.....+|+++++||. ||
T Consensus 352 ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea---ts 428 (497)
T COG5265 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA---TS 428 (497)
T ss_pred hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh---hh
Confidence 222111 00 0111111 1111 2688999999999999999999999 66
Q ss_pred hHH---HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1121 TSD---GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1121 ~~D---g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.+| -.+|. +-|..+. .|.|.|++-|-+.-+... + .|.++..|.+++.|.
T Consensus 429 aldt~te~~iq-~~l~~~~--~~rttlviahrlsti~~a-d--eiivl~~g~i~erg~ 480 (497)
T COG5265 429 ALDTHTEQAIQ-AALREVS--AGRTTLVIAHRLSTIIDA-D--EIIVLDNGRIVERGT 480 (497)
T ss_pred HhhhhHHHHHH-HHHHHHh--CCCeEEEEeehhhhccCC-c--eEEEeeCCEEEecCc
Confidence 666 33332 4444443 377999999998766543 2 799999999998874
No 429
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=5e-07 Score=94.20 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1098 ALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1098 ~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+.+.+..+..-+.|||||-+|.|+.-..+++ ++|..|++. |.-+|++||-+-+.
T Consensus 138 ~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~s-GaQ~IiATHSPiLl 191 (233)
T COG3910 138 AIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADS-GAQIIIATHSPILL 191 (233)
T ss_pred HHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhc-CCeEEEEecChhhe
Confidence 4455567899999999999999999887765 788988775 89999999987553
No 430
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=3.5e-07 Score=104.79 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHh--CC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1093 ELSETALMLSS--AT--RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1093 e~~~~~~il~~--a~--~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
+.++++.++.. +. +|+++|||||++|.++.....+. .++..+.. ++++|++||++.+. .+++ ++..+..+
T Consensus 175 ~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~--~~tii~isH~~~~~-~~~d--~~~~l~~~ 248 (276)
T cd03241 175 ELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR--SHQVLCITHLPQVA-AMAD--NHFLVEKE 248 (276)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC--CCEEEEEechHHHH-HhcC--cEEEEEEe
Confidence 34445544432 33 99999999999999888666554 34555533 68999999999865 4565 55555444
No 431
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=5.5e-07 Score=119.22 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=109.5
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHH------------hhcC--------cccccccc-------
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------AQVG--------ADVPAEIF------- 1065 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~il------------aq~G--------~~vPa~~~------- 1065 (1288)
..|+++|+|.+ .+|+-++|+|..|||||||+.++-.++.. +++| +.+|++..
T Consensus 1153 p~VLk~is~~I-~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1153 PLVLKGISFTI-KPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred cchhcCceEEE-cCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 68999999999 78999999999999999999998876531 2333 45677642
Q ss_pred -ccchHH-----HHH---HhcC-----------chhhHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1066 -EISPVD-----RIF---VRMG-----------AKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1066 -~l~~~d-----~i~---~~ig-----------~~d~i~~~~Stf~~e~~~-~~~il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+-+++ +|+ .+.. ....+..+-+.|+++.++ +..++++..+.++|+|||.|+..|+.--
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 222332 222 2222 233344455778866665 5666678899999999999777777643
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1125 QAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1125 ~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
.-|-..|-+++ .+||||.+-|.+.-+.. +| +|.++..|.+++-++
T Consensus 1312 ~lIQ~tIR~~F---~dcTVltIAHRl~TVmd-~D--rVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1312 ALIQKTIREEF---KDCTVLTIAHRLNTVMD-SD--RVLVLDAGRVVEFDS 1356 (1381)
T ss_pred HHHHHHHHHHh---cCCeEEEEeeccchhhh-cC--eEEEeeCCeEeecCC
Confidence 33333444444 27999999999987765 33 899999999998764
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.43 E-value=4.3e-07 Score=103.09 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=58.5
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHhhcCcc-ccccccccchHH---H------------HHHhcCchhhHhhcccchH
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD-VPAEIFEISPVD---R------------IFVRMGAKDHIMAGQSTFL 1091 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~-vPa~~~~l~~~d---~------------i~~~ig~~d~i~~~~Stf~ 1091 (1288)
..++|.||||+|||||++.+++..-.. .|.. +... .+..+| . ++.++.+-++..+ .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~--~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-----~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK--KVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-----A 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE--EeecchhHHHHHHHhcccccccccccccccccchH-----H
Confidence 468999999999999999999755321 2211 1110 111111 1 1112222111111 1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
..| .++..+.+|+++|+|||++ .. ...++++.+ + .|.++|++||+..+.
T Consensus 184 ~~~----~~~i~~~~P~villDE~~~---~e----~~~~l~~~~-~-~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 184 EGM----MMLIRSMSPDVIVVDEIGR---EE----DVEALLEAL-H-AGVSIIATAHGRDVE 232 (270)
T ss_pred HHH----HHHHHhCCCCEEEEeCCCc---HH----HHHHHHHHH-h-CCCEEEEEechhHHH
Confidence 122 2222346999999999943 22 234566665 3 389999999987664
No 433
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.28 E-value=3.2e-06 Score=115.01 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=55.4
Q ss_pred ccchH-HHHHHHHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1087 QSTFL-TELSETALMLSSAT---RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1087 ~Stf~-~e~~~~~~il~~a~---~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
..|++ +|.+++..+..+.. .+.|+|||||+.|..+.|...+. .+++.|... |.|+|++.|++++... +|
T Consensus 1697 ~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~-g~tvivieH~~~~i~~-aD 1769 (1809)
T PRK00635 1697 LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSL-GHSVIYIDHDPALLKQ-AD 1769 (1809)
T ss_pred CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHh-CC
Confidence 45666 67787766665543 47999999999999999988776 678888765 8999999999999877 44
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.23 E-value=6.2e-06 Score=102.11 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=54.0
Q ss_pred ccchH-HHHHHHHHHHH---hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhh
Q 000778 1087 QSTFL-TELSETALMLS---SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVD 1155 (1288)
Q Consensus 1087 ~Stf~-~e~~~~~~il~---~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~ 1155 (1288)
..|++ +|.+++..+.. .++...|.|||||+.|.-..|...+. .+|..|... |-|||++.|+++.+..
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~-GnTViVIEHNLdVIk~ 890 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDK-GNTVIVIEHNLDVIKT 890 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecccceEee
Confidence 44555 67777655544 46888999999999999999988765 788999875 8899999999997654
No 435
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.11 E-value=1.3e-05 Score=88.52 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=32.3
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~ 1157 (1288)
...+..++||||+.++.|..-...++ .+|..+.+ ++-+|++||...+...+.
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~--~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK--QSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT--TSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccc-cccccccc--cccccccccccccccccc
Confidence 45788999999997777766554443 44555532 478999999988877654
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.08 E-value=2.8e-05 Score=86.71 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=61.0
Q ss_pred CCCcEEEEEecCCCChhHHH-hhhhhHHHHhhcCccccccccccchHHHHHHhcCc--hhhHhhc----cc---chH--H
Q 000778 1025 GNASFILLTGPNMGGKSTLL-RQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA--KDHIMAG----QS---TFL--T 1092 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlL-r~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~--~d~i~~~----~S---tf~--~ 1092 (1288)
.+|++++|+||||+|||||. +.++++.-....+.|+..+...-.+.... ..+|. .+....+ .. .++ .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccChH
Confidence 46789999999999999995 55555433233334444332211112221 22332 1111110 00 011 1
Q ss_pred HH-HHHHHHHHh--CCCCcEEEEeCCCCCCChH-HHH--HHHHHHHHHHHhccCcEEEEEcCCchh
Q 000778 1093 EL-SETALMLSS--ATRNSLVVLDELGRGTSTS-DGQ--AIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1093 e~-~~~~~il~~--a~~~sLvLLDEpg~GTs~~-Dg~--aia~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
+. ..+..++.. ..+|+++++|||+.+.... |.. .....++..+.+. ++++++ ||+...
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~ 164 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKE 164 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-Eecccc
Confidence 11 112223332 3579999999997665211 221 2234566666444 775555 555443
No 437
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=98.04 E-value=1.9e-06 Score=94.41 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=51.4
Q ss_pred cccccccccccceEEeecCCCcEEeEEEEe-eeCCCCcEEEEccCCc----hhhhccC---cceEEEEe
Q 000778 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKS-FDKECNKHLVQYDDGE----DELLDLG---KEKIEWVQ 158 (1288)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~-~~~~~~~h~v~Yddgd----~e~l~l~---~e~~~~~~ 158 (1288)
.....+++||++|..-||+++.||++.|++ |....++|.+.||..+ ++|++|. +|+|+|..
T Consensus 153 ~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 153 GNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 344467799999999999999999999999 5566778999998777 7888877 88888884
No 438
>PRK13695 putative NTPase; Provisional
Probab=98.03 E-value=1.2e-05 Score=85.58 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=32.0
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchh
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
..+.++.+|||||+| .+...+.. ...++..+.+ .+.++|+++|+...
T Consensus 92 ~~l~~~~~lllDE~~-~~e~~~~~--~~~~l~~~~~-~~~~~i~v~h~~~~ 138 (174)
T PRK13695 92 RALEEADVIIIDEIG-KMELKSPK--FVKAVEEVLD-SEKPVIATLHRRSV 138 (174)
T ss_pred hccCCCCEEEEECCC-cchhhhHH--HHHHHHHHHh-CCCeEEEEECchhh
Confidence 345799999999984 24455432 2355556654 48899999998643
No 439
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=2.4e-05 Score=89.50 Aligned_cols=60 Identities=7% Similarity=0.013 Sum_probs=36.9
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc-CCCceEEeeeEE
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK-KDPRVSLCHMAC 1169 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~-~~~~v~~~~~~~ 1169 (1288)
...|.++|||||++|.|+.... .+++.+.+ .+ .++++||+.+....++ +...+..++.|.
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~----~l~~~l~~-~~-q~ii~~~~~~~~~~~~~~~~~i~~l~~g~ 268 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQA----ALLDAIEG-RV-QTFVTTTDLADFDALWLRRAQIFRVDAGT 268 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHH----HHHHHhhc-CC-CEEEEeCCchhccchhccCccEEEEeCcE
Confidence 4789999999997777776544 34555533 23 4666666666555544 323455555553
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.00 E-value=2.5e-05 Score=83.62 Aligned_cols=121 Identities=17% Similarity=0.069 Sum_probs=63.9
Q ss_pred EEEEecCCCChhHHHhhhhhHHHH-hhcCccccccccccchHHHHHHhcCchhh--Hhhc--------ccchHHHHH---
Q 000778 1030 ILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVRMGAKDH--IMAG--------QSTFLTELS--- 1095 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLr~i~~i~il-aq~G~~vPa~~~~l~~~d~i~~~ig~~d~--i~~~--------~Stf~~e~~--- 1095 (1288)
++|.||.|+|||||.-+++.-... ...+.|+-.+... .-+.+.+..+|..-. ...+ ...++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~-~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP-EELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 689999999999999888753321 1222344332211 111122233332211 1111 111122111
Q ss_pred ----HHHHHHHhCCCCcEEEEeCCCCCCCh--HHHHHHHHHHHHHHHhccCcEEEEEcCCchh
Q 000778 1096 ----ETALMLSSATRNSLVVLDELGRGTST--SDGQAIAESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1096 ----~~~~il~~a~~~sLvLLDEpg~GTs~--~Dg~aia~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
..........+|++|++|||+...+. .+.......++..+.+ .|+++|+++|....
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence 11111113468999999999776652 1122233456666655 48999999998875
No 441
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.98 E-value=1.5e-05 Score=92.11 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=86.8
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcC--------ccccccc-----cccc---------------hHHHHHHhcC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEI-----FEIS---------------PVDRIFVRMG 1078 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--------~~vPa~~-----~~l~---------------~~d~i~~~ig 1078 (1288)
.++++.+|.||-|||||+|+++|..- ...| +|-|+.. ..+. ++..+..-+.
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ 445 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ 445 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh
Confidence 57899999999999999999998321 1112 2223221 1110 0111122233
Q ss_pred chhhHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhc
Q 000778 1079 AKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYK 1157 (1288)
Q Consensus 1079 ~~d~i~~~~Stf~-~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~ 1157 (1288)
.++-+.+...+++ +|+++++.++.+-.+.++.|+|||-+=.|...... |..++.++.-+.+.|.+++.||.-.+.+++
T Consensus 446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~-AskvikRfilhakktafvVEhdfImaTYla 524 (592)
T KOG0063|consen 446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRII-ASKVIKRFILHAKKTAFVVEHDFIMATYLA 524 (592)
T ss_pred HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHH-HHHHHHHHHHhccchhhhhhhHHHHHHhhc
Confidence 4444555555665 79999999999999999999999955555444443 334455444444778899999999888888
Q ss_pred CCCceEE
Q 000778 1158 KDPRVSL 1164 (1288)
Q Consensus 1158 ~~~~v~~ 1164 (1288)
+ +|++
T Consensus 525 d--rviv 529 (592)
T KOG0063|consen 525 D--RVIV 529 (592)
T ss_pred c--eeEE
Confidence 8 5443
No 442
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.94 E-value=2.4e-05 Score=81.05 Aligned_cols=123 Identities=24% Similarity=0.238 Sum_probs=63.6
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHhhcC--ccccccccccchHHHH--HHhcCchhhHhh--ccc-ch-HHHHHHHHHH
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVG--ADVPAEIFEISPVDRI--FVRMGAKDHIMA--GQS-TF-LTELSETALM 1100 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ilaq~G--~~vPa~~~~l~~~d~i--~~~ig~~d~i~~--~~S-tf-~~e~~~~~~i 1100 (1288)
+++|+||||+||||+++.++..... +-+ .|+..+.......... +...+..++... ... .. .....+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3789999999999999999875432 222 2223322211111111 111111111100 000 11 1222334445
Q ss_pred HHhCCCCcEEEEeCCCCCCChH---------HHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1101 LSSATRNSLVVLDELGRGTSTS---------DGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GTs~~---------Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+....++.++|+||+..-.... ........+++.+ ++.++++|+++|.....
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 5567899999999995322111 1123333455444 44689999999987643
No 443
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.90 E-value=9.6e-05 Score=82.59 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHH-HhhcCccccccccccchHHHHHHhcC--chhhHhhccc-----------ch
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVGADVPAEIFEISPVDRIFVRMG--AKDHIMAGQS-----------TF 1090 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~i-laq~G~~vPa~~~~l~~~d~i~~~ig--~~d~i~~~~S-----------tf 1090 (1288)
..|.+++|+|++|+|||||..+++.-.+ -...+.|+-.+...-.+..+ +..+| ..+.+..+.. ..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccC
Confidence 5689999999999999999999864222 22334455444322222221 22233 2222211111 11
Q ss_pred HHHHHHHH-HHHHhC--CCCcEEEEeCCCCCCChHHHHHHHHHH---HHHHHhccCcEEEEEcCCchh
Q 000778 1091 LTELSETA-LMLSSA--TRNSLVVLDELGRGTSTSDGQAIAESV---LEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1091 ~~e~~~~~-~il~~a--~~~sLvLLDEpg~GTs~~Dg~aia~ai---le~l~~~~~~~vl~~TH~~~l 1152 (1288)
...+.++. .+...+ .++++|++|||+...+..+...+ ..+ +..+.+ .++++|+++|....
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~-~~~l~~l~~l~~-~g~tvllt~~~~~~ 167 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI-LNFLTEAKNLVD-LGKTILITLHPYAF 167 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH-HHHHHHHHHHHh-CCCEEEEEecCCcC
Confidence 11222222 222222 58999999999644333332222 233 333444 48899999997764
No 444
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=3.5e-05 Score=100.68 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=72.3
Q ss_pred HHhcCchhh-HhhcccchHH-HHHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1074 FVRMGAKDH-IMAGQSTFLT-ELSETALMLSSATRN--SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1074 ~~~ig~~d~-i~~~~Stf~~-e~~~~~~il~~a~~~--sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
+..+|+... +.+...++++ |++++..+..++.++ .|+|||||++|.++.+...+. .+|..|.++ |.+||++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~-G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDL-GNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhC-CCEEEEEECC
Confidence 344555432 4566778874 555666666666654 899999999999999877664 677778665 8999999999
Q ss_pred chhhhhhcCCCceEEe------eeEEEEecCC
Q 000778 1150 HRLAVDYKKDPRVSLC------HMACQVGNGV 1175 (1288)
Q Consensus 1150 ~~l~~~~~~~~~v~~~------~~~~~~~~g~ 1175 (1288)
++.+. .++ +|+.+ +.|.++..|.
T Consensus 549 ~~~i~-~aD--~vi~LgpgaG~~~G~Iv~~g~ 577 (924)
T TIGR00630 549 EETIR-AAD--YVIDIGPGAGIHGGEVVASGT 577 (924)
T ss_pred HHHHh-hCC--EEEEecccccCCCCEEeeccC
Confidence 99876 677 88888 7788877664
No 445
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=1.5e-05 Score=103.82 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=102.6
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH---------------------------HHhhcCccccccc--
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------------ILAQVGADVPAEI-- 1064 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~---------------------------ilaq~G~~vPa~~-- 1064 (1288)
.+.+|++.-+ .+|+++++.||-|+||||||+.++|.. +.+|....+|--.
T Consensus 129 ~il~~~sg~~-~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 129 QILKDISGII-KPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred eeecCcceeE-cCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4677888777 789999999999999999999999832 1111111111100
Q ss_pred --------c-----------ccc----hHHHHHHhcCch--------hhHhhcccchHHHHHHHHHHHHhCCCCcEEEEe
Q 000778 1065 --------F-----------EIS----PVDRIFVRMGAK--------DHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113 (1288)
Q Consensus 1065 --------~-----------~l~----~~d~i~~~ig~~--------d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLD 1113 (1288)
+ +.. +.|.++.-+|.. ++..+|.|. +|.+++..+=..+.+++.+.+|
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSG--GerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSG--GERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccC--cccceeeeeeeeecCcceeeee
Confidence 0 000 223344444432 233333332 4555555555578999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCch-hhhhhcCCCceEEeeeEEEEecCCC
Q 000778 1114 ELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR-LAVDYKKDPRVSLCHMACQVGNGVG 1176 (1288)
Q Consensus 1114 Epg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~-l~~~~~~~~~v~~~~~~~~~~~g~~ 1176 (1288)
|+++|.|......++. .++.+++..+.|++++-|... .+-.+.| .|.++..|.++..|..
T Consensus 286 e~t~GLDSsTal~iik-~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD--~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIK-ALRQLAHITGATALVSILQPSPEIYDLFD--DVILLSEGYQIYQGPR 346 (1391)
T ss_pred cccccccHHHHHHHHH-HHHHHHhhhcceEEEEeccCChHHHHhhh--heeeeeccceEEeccH
Confidence 9999999988777764 455566666888888887754 3344455 7899999999988753
No 446
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.83 E-value=3.5e-05 Score=85.06 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCC-cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1104 ATRN-SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1104 a~~~-sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
+... .++++|||-.+..|.-...++ .++..+.. .++-+|++||...+.
T Consensus 254 ~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 254 AKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp TTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGG-GSSEEEEEES-GGG-
T ss_pred cCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCc-cCCEEEEeCccchhc
Confidence 3343 999999999999997555544 44444433 368899999998764
No 447
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.79 E-value=4.9e-05 Score=99.52 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=72.5
Q ss_pred HHHhcCchhh-HhhcccchH-HHHHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC
Q 000778 1073 IFVRMGAKDH-IMAGQSTFL-TELSETALMLSSATRN--SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH 1148 (1288)
Q Consensus 1073 i~~~ig~~d~-i~~~~Stf~-~e~~~~~~il~~a~~~--sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH 1148 (1288)
.+..+|+... +.....+++ +|.+++..+..++.++ .|+|||||++|.++.+...+. .+|..|.+ .|.|||++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~-~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRD-LGNTLIVVEH 549 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHh-CCCEEEEEeC
Confidence 3455666532 456667777 4555566666666665 999999999999999887665 67777865 4899999999
Q ss_pred CchhhhhhcCCCceEEe------eeEEEEecCC
Q 000778 1149 YHRLAVDYKKDPRVSLC------HMACQVGNGV 1175 (1288)
Q Consensus 1149 ~~~l~~~~~~~~~v~~~------~~~~~~~~g~ 1175 (1288)
+++.+. .++ +|..+ +.|.++..|.
T Consensus 550 ~~~~i~-~aD--~vi~LgpgaG~~~G~iv~~g~ 579 (943)
T PRK00349 550 DEDTIR-AAD--YIVDIGPGAGVHGGEVVASGT 579 (943)
T ss_pred CHHHHH-hCC--EEEEeccccCCCCCEEeeccC
Confidence 999875 466 88888 7788877664
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.79 E-value=0.00015 Score=72.15 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=56.4
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhh-cCccccccccccchHHHHHHhcCchhhHhhcccchHH-HHHHHHHHHHhC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT-ELSETALMLSSA 1104 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq-~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~-e~~~~~~il~~a 1104 (1288)
+..++|+||+|+||||+++.++....... ...++-+............ ............. ...+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 46799999999999999999985433222 1122222221111111110 0000001111111 111122222222
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHH----HHHHHHhccCcEEEEEcCC
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAES----VLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~a----ile~l~~~~~~~vl~~TH~ 1149 (1288)
..+.+|++||+++-............ .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 34799999999776666644322210 0111222346788888884
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.73 E-value=0.00081 Score=81.53 Aligned_cols=153 Identities=16% Similarity=0.048 Sum_probs=85.6
Q ss_pred CcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccc-cccccchHHHHH-HhcCchhhHhhc---
Q 000778 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA-EIFEISPVDRIF-VRMGAKDHIMAG--- 1086 (1288)
Q Consensus 1012 ~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa-~~~~l~~~d~i~-~~ig~~d~i~~~--- 1086 (1288)
+..+.+++ |.+ .+|++++|+|+||+||||||++|++..- +..|.+.-. +... . +..++ ..++.. .+...
T Consensus 145 g~~vid~l-~~i-~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~-e-v~e~~~~~l~~~-~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTV-GKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGR-E-VREFIERDLGPE-GLKRSIVV 218 (438)
T ss_pred chhhhhee-eee-cCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCc-c-HHHHHHhhcChh-hhcCeEEE
Confidence 34567777 887 7899999999999999999999987432 222221100 0000 0 11111 111111 01110
Q ss_pred --ccchHHHHH--------HHHHHHHhCCCCcEEEEe-----------------CCCCCCChHH--HHHHHHHHHHHHHh
Q 000778 1087 --QSTFLTELS--------ETALMLSSATRNSLVVLD-----------------ELGRGTSTSD--GQAIAESVLEHFVH 1137 (1288)
Q Consensus 1087 --~Stf~~e~~--------~~~~il~~a~~~sLvLLD-----------------Epg~GTs~~D--g~aia~aile~l~~ 1137 (1288)
.+.-...++ .+|.-++.....=||++| || -||..+| ..+....+++.+..
T Consensus 219 v~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~-P~~~G~dp~~~~~l~~ller~~~ 297 (438)
T PRK07721 219 VATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEP-PTTKGYTPSVFAILPKLLERTGT 297 (438)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCC-CccccCCHHHHHHHHHHHHHhcC
Confidence 011111111 122333344667788888 54 2344444 33344577777753
Q ss_pred -ccCc-----EEEEEcCCchhhhhhcCCCceEEeeeEEEEecCC
Q 000778 1138 -KVQC-----RGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1138 -~~~~-----~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~ 1175 (1288)
..|. ||++.+||++ ..+++ ++..++.|.++.++.
T Consensus 298 ~~~GsIT~~~TVlv~~hdm~--e~i~d--~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 298 NASGSITAFYTVLVDGDDMN--EPIAD--TVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCCCeeeEEEEEEECCCCC--chhhh--hEEEecCEEEEEecc
Confidence 2364 8999999988 36666 888899998887664
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.65 E-value=0.00013 Score=79.55 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=56.1
Q ss_pred EEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-cccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCC
Q 000778 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1288)
Q Consensus 1029 ~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~-~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~ 1107 (1288)
+++|+||+||||||+++.++........|..+--+. ..+. .......+. ...+.....+|... +..+ +..+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~a--Lr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAA--LRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHH--hcCCc
Confidence 689999999999999998765332111121111110 0000 000000000 00011111233221 1222 34689
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhh
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAV 1154 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~ 1154 (1288)
+++++||+ .+... +..+++. +. .|..+++++|..+...
T Consensus 76 d~ii~gEi---rd~e~----~~~~l~~-a~-~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEM---RDLET----IRLALTA-AE-TGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCC---CCHHH----HHHHHHH-HH-cCCEEEEEecCCcHHH
Confidence 99999999 45442 3344543 33 4788999999987553
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.58 E-value=4.9e-05 Score=88.58 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCch-hhHhhcccchHHHHHHHHHHHHh
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLSS 1103 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~-d~i~~~~Stf~~e~~~~~~il~~ 1103 (1288)
..+..++|+||+||||||||+.+++.. ....+..+-.+...+.+.. -..+... .....+...+ .+.++.. ..+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~--~~~~~l~-~~L 215 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKV--TPKDLLQ-SCL 215 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCCC--CCEEEEEecCCCCCcCcc--CHHHHHH-HHh
Confidence 357899999999999999999988532 1111211101111111100 0000000 0000011111 1222111 124
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeE
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMA 1168 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~ 1168 (1288)
..+|++|++||| .+. + ++++++.+. ..+..+|.++|....... .+ ++..+.++
T Consensus 216 r~~pd~ii~gE~---r~~-e----~~~~l~a~~-~g~~~~i~T~Ha~~~~~~-~~--Rl~~l~~~ 268 (308)
T TIGR02788 216 RMRPDRIILGEL---RGD-E----AFDFIRAVN-TGHPGSITTLHAGSPEEA-FE--QLALMVKS 268 (308)
T ss_pred cCCCCeEEEecc---CCH-H----HHHHHHHHh-cCCCeEEEEEeCCCHHHH-HH--HHHHHhhc
Confidence 589999999999 332 1 345677664 323356899999885443 33 45444444
No 452
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.54 E-value=0.00032 Score=83.58 Aligned_cols=173 Identities=17% Similarity=0.141 Sum_probs=115.9
Q ss_pred CCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHh----------------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------------- 1054 (1288)
Q Consensus 991 ~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ila---------------- 1054 (1288)
.++|++++..-+- ..+.....||+|++ ..|++++|.|--|-|-+.|+-.|+|+...+
T Consensus 255 ~~vL~V~~L~v~~------~~~~~~v~~vs~~V-r~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKD------RRGVTAVKDVSFEV-RAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeec------CCCCceeeeeeeEE-ecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC
Confidence 4567776654221 11235578899999 889999999999999999999999965211
Q ss_pred ------hcCcccccccc------ccchHHHH-HHhcC---------------------------ch-hhHhhcccchH-H
Q 000778 1055 ------QVGADVPAEIF------EISPVDRI-FVRMG---------------------------AK-DHIMAGQSTFL-T 1092 (1288)
Q Consensus 1055 ------q~G~~vPa~~~------~l~~~d~i-~~~ig---------------------------~~-d~i~~~~Stf~-~ 1092 (1288)
.-..|||.+.- .+++.+.+ +.+.. +. .+......++| +
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 11246666541 22333322 11111 00 00001122333 3
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeeeEEEEe
Q 000778 1093 ELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1093 e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 1172 (1288)
.++.+.....+..+|+|||+.+|++|.|......|...+++ +.+ .|+.||+++-+++.+..+++ +|.+++.|.++.
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~-~G~AVLLiS~dLDEil~lsD--rIaVi~~Gri~~ 483 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRD-AGKAVLLISEDLDEILELSD--RIAVIYEGRIVG 483 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHh-cCCEEEEEehhHHHHHHhhh--eeeeeeCCceec
Confidence 44555556668899999999999999998876666656665 434 48999999999999999999 999999998876
Q ss_pred cC
Q 000778 1173 NG 1174 (1288)
Q Consensus 1173 ~g 1174 (1288)
..
T Consensus 484 ~~ 485 (501)
T COG3845 484 IV 485 (501)
T ss_pred cc
Confidence 54
No 453
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.45 E-value=0.00058 Score=68.70 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~ 1105 (1288)
.+..++|+||.|+||||+++.++.... +.+..+-. +. .............+... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~----~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLY----LN-ASDLLEGLVVAELFGHF-------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEE----Ee-hhhhhhhhHHHHHhhhh-------hHhHHHHhhccC
Confidence 356799999999999999999996443 11111100 00 00011000000000000 122223334457
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh----ccCcEEEEEcCCch
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVH----KVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~----~~~~~vl~~TH~~~ 1151 (1288)
.+.+|++||.... ....... ...+++.+.. ..++.+|++|+...
T Consensus 84 ~~~~lilDe~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSL-SRGAQNA-LLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhh-hHHHHHH-HHHHHHhcCceeccCCCeEEEEecCccc
Confidence 8899999999554 1122222 2244444432 24788899988765
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.39 E-value=9e-05 Score=72.23 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHhhhh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~ 1048 (1288)
..++++++|.+ ..|++++|+||+|+|||||++++.
T Consensus 2 ~~aL~~vsl~i-~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDV-YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEE-cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35678899988 678999999999999999999975
No 455
>PRK09183 transposase/IS protein; Provisional
Probab=97.39 E-value=0.00057 Score=77.66 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=62.4
Q ss_pred ccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHH
Q 000778 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSET 1097 (1288)
Q Consensus 1018 di~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~ 1097 (1288)
++++ + ..++.++|+||+|+|||+|+..|+.... +.|..|-. +. ...++..+.... .. . .+
T Consensus 95 ~~~~-i-~~~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~----~~-~~~l~~~l~~a~--~~--~-------~~ 154 (259)
T PRK09183 95 SLSF-I-ERNENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRF----TT-AADLLLQLSTAQ--RQ--G-------RY 154 (259)
T ss_pred cCCc-h-hcCCeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEE----Ee-HHHHHHHHHHHH--HC--C-------cH
Confidence 4444 3 4678899999999999999999975433 23422210 01 112222221100 00 0 11
Q ss_pred HHHHH-hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1098 ALMLS-SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1098 ~~il~-~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..++. ....+++++|||+|...-..++..+...++....++ + .+|++|+..
T Consensus 155 ~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~-~-s~iiTsn~~ 206 (259)
T PRK09183 155 KTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-G-SMILTSNLP 206 (259)
T ss_pred HHHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhc-C-cEEEecCCC
Confidence 12222 246789999999986544445555566777665443 3 567777764
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.29 E-value=0.00024 Score=76.70 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ 1051 (1288)
..|..++|+|||||||||+++.+++..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998754
No 457
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.00051 Score=81.40 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=51.1
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETA 1098 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~ 1098 (1288)
..|.+++|+||||+||||++..|+......+ ...++..+..+++-.+++-+ .+|+.-....... ++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~-------~l~ 207 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGG-------DLQ 207 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcc-------cHH
Confidence 4578999999999999999999997554322 12344555444444444321 2222111111111 123
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 000778 1099 LMLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1099 ~il~~a~~~sLvLLDEpg~G 1118 (1288)
..+....+.++||+|++|+.
T Consensus 208 ~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHhcCCCEEEEcCCCCC
Confidence 34445577899999999654
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.00068 Score=82.73 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=51.2
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhc---CccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQV---GADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~---G~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.|.+++|+||||+||||++..|++...+.+- .++++++..+++.++++-. .+|..-... ..-.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~-------~~~~Dl~~ 327 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAV-------KDAADLRL 327 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeecc-------CCchhHHH
Confidence 4679999999999999999999976544321 2356666655555554422 122110000 01112222
Q ss_pred HHHhCCCCcEEEEeCCCCC
Q 000778 1100 MLSSATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg~G 1118 (1288)
.+..+.+..++|+|.+|++
T Consensus 328 aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 328 ALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHhccCCCeEEeCCCCcC
Confidence 3344566789999998654
No 459
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.19 E-value=0.00027 Score=61.90 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=26.2
Q ss_pred cccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHH
Q 000778 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1288)
Q Consensus 1017 ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~i 1052 (1288)
.++.|. ..|.+.+|+||||+||||+|.+|..+.+
T Consensus 15 ~~~~~~--~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFD--PRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeec--CCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 345554 3456899999999999999999985443
No 460
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.18 E-value=0.0022 Score=81.01 Aligned_cols=110 Identities=25% Similarity=0.221 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1092 TELSETALMLSSAT----RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~----~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+++++++.+++++. +|+++|||||++|.++.....+. .++..+. + +.+||++||++.++. .++ ++..++.
T Consensus 444 Ge~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~-~-~~~vi~iTH~~~~~~-~ad--~~~~l~k 517 (563)
T TIGR00634 444 GELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLS-E-RHQVLCVTHLPQVAA-HAD--AHFKVEK 517 (563)
T ss_pred hHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-c-CCEEEEEEChHHHHH-hcC--eEEEEEE
Confidence 45666766666554 46999999999999998776655 5666664 3 689999999999885 566 6666665
Q ss_pred EEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHc-C--CCHHHHHHHHHH
Q 000778 1168 ACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLA-G--IPDKVLQKAVAK 1217 (1288)
Q Consensus 1168 ~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~a-G--lP~~vi~~A~~~ 1217 (1288)
+.. . ..+.+....|. +..-=-++|||+ | +-+..+..|++.
T Consensus 518 ~~~--~----~~t~s~i~~L~----~~~r~~EiArml~G~~~t~~~~~~A~~l 560 (563)
T TIGR00634 518 EGL--D----GRTATRVRPLS----GEERVAELARMLAGLEKSDLTLAHAQEL 560 (563)
T ss_pred ccC--C----CcEEEEEEECC----ccHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 431 1 12333333342 222346799998 4 356667777765
No 461
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.00066 Score=81.65 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=56.8
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.|++++|+||||+||||+++.|++..++.+ .+.++.+...+++.++++.. .+|..-.... ...++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~-------~~~dl~~ 262 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK-------DIADLQL 262 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC-------CHHHHHH
Confidence 468999999999999999999998654332 33456666667777766432 2232111110 1112334
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHH
Q 000778 1100 MLSSATRNSLVVLDELGRGTSTSDG 1124 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg~GTs~~Dg 1124 (1288)
.+..+.+..++|+|.+ |.++.+.
T Consensus 263 al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 263 MLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHhcCCCEEEecCC--CCCcchH
Confidence 4455678899999986 6666554
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.13 E-value=0.0017 Score=64.95 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred EEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcE
Q 000778 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSL 1109 (1288)
Q Consensus 1030 ~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sL 1109 (1288)
++|+||.|+||||+.+.++.. .|..+ ..+... .+... ........+..+.........|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~-----l~~~~----~~i~~~-~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-----LGFPF----IEIDGS-ELISS---------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-----TTSEE----EEEETT-HHHTS---------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhh-----ccccc----cccccc-ccccc---------ccccccccccccccccccccccee
Confidence 589999999999999999943 23111 011100 01100 111111122222222211225899
Q ss_pred EEEeCCCCCCChH------HHHHHHHHHHHHHHhcc----CcEEEEEcCCchhh
Q 000778 1110 VVLDELGRGTSTS------DGQAIAESVLEHFVHKV----QCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1110 vLLDEpg~GTs~~------Dg~aia~aile~l~~~~----~~~vl~~TH~~~l~ 1153 (1288)
|++||.-.-.... ....+...++..+.... ++.+|++|++.+..
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 9999974433322 22334445555554322 36888899986644
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.09 E-value=0.00097 Score=78.95 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchH-HHHHHhcCchhhHhhcccchHHHHHHHHHHHHhC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPV-DRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~-d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a 1104 (1288)
++.+++|+||+||||||+|+.+.........+..+-.+.. +.+. ......+. ...+....-+|..- +..+ +.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp-~E~~~~~~~~~i~-q~evg~~~~~~~~~---l~~~--lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP-IEYVHRNKRSLIN-QREVGLDTLSFANA---LRAA--LR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC-hhhhccCccceEE-ccccCCCCcCHHHH---HHHh--hc
Confidence 4578999999999999999998753221111211111110 0000 00000000 00010011122211 2222 34
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
.+|++|++||+ .++... ..+++. +. .|..++.++|-.+..
T Consensus 194 ~~pd~i~vgEi---rd~~~~----~~~l~a-a~-tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 194 EDPDVILIGEM---RDLETV----ELALTA-AE-TGHLVFGTLHTNSAA 233 (343)
T ss_pred cCCCEEEEeCC---CCHHHH----HHHHHH-HH-cCCcEEEEEcCCCHH
Confidence 79999999999 555432 233443 23 488899999986644
No 464
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0031 Score=80.53 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=58.8
Q ss_pred ccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC----ccccccccccchHHHHHH---hcCchhhHhhccc
Q 000778 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQS 1088 (1288)
Q Consensus 1016 ~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G----~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~S 1088 (1288)
.++.++.. ..+++++|+||||+||||++..|++..... .| .++.++..+++..+++.. .+|+.-....
T Consensus 175 l~~~~~~~-~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~--- 249 (767)
T PRK14723 175 LRDEDALL-AQGGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK--- 249 (767)
T ss_pred ccCCCccc-CCCeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---
Confidence 34444444 357899999999999999999999765332 23 355666666666665432 2332111111
Q ss_pred chHHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 000778 1089 TFLTELSETALMLSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1089 tf~~e~~~~~~il~~a~~~sLvLLDEpg~GT 1119 (1288)
.-.++..++..+.+.++||+|=+||.-
T Consensus 250 ----~~~~l~~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 250 ----DAADLRFALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred ----CHHHHHHHHHHhcCCCEEEEeCCCCCc
Confidence 122344555556677999999886553
No 465
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.06 E-value=0.0027 Score=68.41 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=59.3
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhh--cC---------ccccccccccchHHHH---HHhcCchhhHhh-cc---
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ--VG---------ADVPAEIFEISPVDRI---FVRMGAKDHIMA-GQ--- 1087 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq--~G---------~~vPa~~~~l~~~d~i---~~~ig~~d~i~~-~~--- 1087 (1288)
.|.+++|+||.|+||||++-+++......+ .| .|+..+...-.+..++ +..+...++... ..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 578999999999999999999997554311 01 1222222111111221 111111111110 00
Q ss_pred ------------cchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh----HHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1088 ------------STFLTELSETALMLSSATRNSLVVLDELGRGTST----SDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1088 ------------Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~----~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
......+.++...+....++.+|++|=+.+=+.. .+...-....++.++++.|+++|++.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 0012334455555555567999999966443332 1111234456667777779998888885
No 466
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=97.03 E-value=9.9e-05 Score=91.07 Aligned_cols=289 Identities=9% Similarity=-0.078 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCcc------cceecC
Q 000778 913 PNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASD-FYEGPTC------RPVILD 985 (1288)
Q Consensus 913 p~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~-~~~~~~~------rP~~~~ 985 (1288)
.+-..+..++.+.+.++..++..|.. .+.+..+.+-++...+..+=.+.-.|.+|- -|-.+-. |=.+..
T Consensus 544 ~e~~~~qk~Y~~~Q~~ivrevikia~----tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~ 619 (902)
T KOG0219|consen 544 DEFMSLQKEYDEAQNEIVREIIKIAA----TYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQ 619 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHh
Confidence 34456666777777776666655533 233333333333333333333333343221 1111111 111111
Q ss_pred CCCCCCCeEEEecCCCCccccccCCCCcccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccc-
Q 000778 986 SCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI- 1064 (1288)
Q Consensus 986 ~~~~~~~~l~i~~~rHP~l~~~~l~~~~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~- 1064 (1288)
...|+++ .+.+||++..+. .-++.++++.+-. .+..---.||++++|++|||.+||-++.+++.++.|+..-
T Consensus 620 ---~rHp~lE-~Qd~~~fIpNdv--~le~~~~~~~IiT-GpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il 692 (902)
T KOG0219|consen 620 ---SRHPVLE-GQDEIPFIPNDV--VLEKGKCRMLIIT-GPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGIL 692 (902)
T ss_pred ---cccchhh-ccccCCCCCCcc--ccccCCceEEEEe-CCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHH
Confidence 1223333 467899998642 1245677766643 2333446899999999999999999999999999998764
Q ss_pred cccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEE
Q 000778 1065 FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGL 1144 (1288)
Q Consensus 1065 ~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl 1144 (1288)
++++.-|..+. -+.....+...++++.++.....++....-.+....+|-|+++.+.++.-+.+.....|.....+-+.
T Consensus 693 ~RVGA~D~q~k-G~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt 771 (902)
T KOG0219|consen 693 TRVGAGDSQLK-GISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELT 771 (902)
T ss_pred hhhccchhhhc-chHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHH
Confidence 45555554443 23444445555666666655555555567778899999999999999888888766666655567778
Q ss_pred EEcCCchhhhhhcCCCceEEeeeEEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 000778 1145 FSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAI 1224 (1288)
Q Consensus 1145 ~~TH~~~l~~~~~~~~~v~~~~~~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~aGlP~~vi~~A~~~~~~le~~ 1224 (1288)
+.+|++..+..+.-...|.+ .+.. -+.-.|.-+.+..-.+++.++|...-.+.++.+++.+..++++..
T Consensus 772 ~lae~~~~vKn~h~~a~i~~--~~~~---------llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 772 KLAEQLPTVKNLHVTAQIEN--DDIT---------LLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred hhhhhhhhhhhheeeeEecC--cchh---------hHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 88999888775332111111 1100 011122333445556778888887777777777776655555443
No 467
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.03 E-value=0.0018 Score=75.65 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH---HHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSD---GQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~~~sLvLLDEpg~GTs~~D---g~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
+|+++.+.++..+...++.++||| .+.+| ....| .++..|.. ....+|+|.||+.+..++.+
T Consensus 217 gelqrfaia~~~vq~advyMFDEp---SsYLDVKQRLkaA-~~IRsl~~-p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 217 GELQRFAIAMVCVQKADVYMFDEP---SSYLDVKQRLKAA-ITIRSLIN-PDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred chhhhhhhhhhhhhhcceeEecCC---cccchHHHhhhHH-HHHHHhhC-CCCeEEEEEeechHHHhhhc
Confidence 677888888888899999999999 66666 33323 45566654 36789999999999888776
No 468
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.99 E-value=0.0031 Score=70.30 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh------cC-ccccccc-cccchHHHHHHhcCch-hhHhhcc---cch-H
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ------VG-ADVPAEI-FEISPVDRIFVRMGAK-DHIMAGQ---STF-L 1091 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq------~G-~~vPa~~-~~l~~~d~i~~~ig~~-d~i~~~~---Stf-~ 1091 (1288)
..|+++.|+||+|+|||||+.+++....+.. .+ .|+-.+. .....+.++...++.. +.+.... .-+ .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCH
Confidence 5689999999999999999999986543321 11 2332222 1111122222222211 1111110 001 1
Q ss_pred HHH----HHHHHHHHhCCCCcEEEEeCCCCC------CC--hHHHHHHH---HHHHHHHHhccCcEEEEEcCCch
Q 000778 1092 TEL----SETALMLSSATRNSLVVLDELGRG------TS--TSDGQAIA---ESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1092 ~e~----~~~~~il~~a~~~sLvLLDEpg~G------Ts--~~Dg~aia---~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
.++ .++...+....++.||++|-+++= .. ..+..... ...|..++++.+|++|++.|-..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~ 171 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA 171 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence 122 222233333338999999999431 00 01111111 24555666677999999987653
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.99 E-value=0.0024 Score=71.65 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=31.2
Q ss_pred CCCCcEEEEeCCCCC------CChHHHHHHHHHHHHHHHhccCcEEEEEcCCch
Q 000778 1104 ATRNSLVVLDELGRG------TSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~G------Ts~~Dg~aia~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
..++.+||+| |..+ .++.+...+ ...+..++++.+|++|+++|..-
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~-~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAV-IKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHH-HHHHHHHHHHhCCEEEEEeccCc
Confidence 4799999999 5432 233333333 34566666667999999999864
No 470
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.98 E-value=0.00074 Score=58.08 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=38.7
Q ss_pred ccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccC-Cchhhhcc
Q 000778 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1288)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l 149 (1288)
-+|..|.+.| .|+.||.|+|+++++. +.+.|.|.| |..|++..
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~ 47 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPP 47 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeH
Confidence 4899999999 9999999999999988 889999977 99987653
No 471
>PRK04296 thymidine kinase; Provisional
Probab=96.98 E-value=0.0042 Score=67.35 Aligned_cols=143 Identities=19% Similarity=0.150 Sum_probs=75.4
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc----ccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHH
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD----VPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~----vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~ 1102 (1288)
|.+++|+||-|+||||++..++.-... .|.. .|.-..+-+ ...+.+++|..-... .... ..++.+... .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~-~~~~-~~~~~~~~~--~ 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKPAIDDRYG-EGKVVSRIGLSREAI-PVSS-DTDIFELIE--E 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEecccccccc-CCcEecCCCCcccce-EeCC-hHHHHHHHH--h
Confidence 578999999999999999888743322 2321 122111111 223455555311100 0000 111111111 1
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh----------hhhcCCCceEEeeeEEEEe
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA----------VDYKKDPRVSLCHMACQVG 1172 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~----------~~~~~~~~v~~~~~~~~~~ 1172 (1288)
...+.++|++||... ++... ...+++.+.. .|.+++++.++.++. ..+++ .|..+..-|...
T Consensus 75 ~~~~~dvviIDEaq~----l~~~~-v~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD--~V~~l~~vC~~C 146 (190)
T PRK04296 75 EGEKIDCVLIDEAQF----LDKEQ-VVQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALAD--KVTELKAICVHC 146 (190)
T ss_pred hCCCCCEEEEEcccc----CCHHH-HHHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcC--eEEEeeEEcccc
Confidence 345779999999932 21111 2356666654 489999999984422 23344 666666655442
Q ss_pred cCCCCcceEEEeeEecC
Q 000778 1173 NGVGGVEEVTFLYRLSP 1189 (1288)
Q Consensus 1173 ~g~~~~~~l~~~ykl~~ 1189 (1288)
| ..-+|++|+..
T Consensus 147 -g----~~a~~~~r~~~ 158 (190)
T PRK04296 147 -G----RKATMNQRLID 158 (190)
T ss_pred -C----CccceEEEEeC
Confidence 2 23477788874
No 472
>PRK06921 hypothetical protein; Provisional
Probab=96.94 E-value=0.0037 Score=71.34 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=60.0
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcC---ccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHh
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS 1103 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~ 1103 (1288)
+..++|+||.|.|||.|+.+|+..++- +.| .|+++ ..++..+.. .| ......+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~--------~~l~~~l~~---------~~----~~~~~~~~~ 174 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR-KKGVPVLYFPF--------VEGFGDLKD---------DF----DLLEAKLNR 174 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH--------HHHHHHHHH---------HH----HHHHHHHHH
Confidence 456999999999999999999864332 213 23332 112222110 01 111223445
Q ss_pred CCCCcEEEEeCCCC---CCCh--HHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1104 ATRNSLVVLDELGR---GTST--SDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1104 a~~~sLvLLDEpg~---GTs~--~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
+...+|||||+++. |+.. .........|+++.... +..+|++|+..
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~-~k~tIitsn~~ 225 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLN-HKPILISSELT 225 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 57889999999966 6532 22333445777766543 56778888874
No 473
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.91 E-value=0.0023 Score=64.27 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=54.7
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHh-----hcC-ccccc--cccccchHHHHHHhcCchhhHhhcccchHHHH-HH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA-----QVG-ADVPA--EIFEISPVDRIFVRMGAKDHIMAGQSTFLTEL-SE 1096 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ila-----q~G-~~vPa--~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~-~~ 1096 (1288)
.+.+++|+||.|+||||+++.++.-.... +.. .++.+ ....-.++..++..++....- .....++ ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 45789999999999999999999644321 111 12222 111223444555555433221 1111222 22
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCC
Q 000778 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHY 1149 (1288)
Q Consensus 1097 ~~~il~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~ 1149 (1288)
+...+... ...+|++||. +.+. ..-....|..+.+..++.+|++-+.
T Consensus 79 ~~~~l~~~-~~~~lviDe~----~~l~-~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRR-RVVLLVIDEA----DHLF-SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHC-TEEEEEEETT----HHHH-THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhc-CCeEEEEeCh----HhcC-CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 33333322 2269999998 2221 1112244455555556777776554
No 474
>PRK06526 transposase; Provisional
Probab=96.91 E-value=0.0035 Score=71.04 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=59.6
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~ 1106 (1288)
+.-++|+||.|+|||+|+..|+.-. .+.|..|- +.-...++..+.... ...+ ....+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a--~~~g~~v~-----f~t~~~l~~~l~~~~----~~~~-------~~~~l~~l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA--CQAGHRVL-----FATAAQWVARLAAAH----HAGR-------LQAELVKLGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH--HHCCCchh-----hhhHHHHHHHHHHHH----hcCc-------HHHHHHHhcc
Confidence 4568999999999999999998533 23343221 111223333332110 0111 1122333467
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
++||||||+|.--...+...+...++..-.++ ..+|++|+..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 89999999976544444555566666654333 3577788764
No 475
>PRK06893 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.0028 Score=70.74 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=54.7
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHhhc-CccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCC
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQV-GADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ilaq~-G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~ 1106 (1288)
..+.|.||.|+|||+|++.+|.-..-... ..|++.... ..+.. .++..+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~~------~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFSP------AVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhhH------HHHhhccc
Confidence 46899999999999999999964332211 112222100 00000 12333457
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1107 NSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1107 ~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
.++|+|||+.......+.......+++.+.+. +.++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence 89999999977543333233345677776554 56666666654
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.89 E-value=0.0033 Score=71.83 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=28.8
Q ss_pred ccccccccCCCCCCcEEEEEecCCCChhHHHhhhhhHH
Q 000778 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1288)
Q Consensus 1014 ~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ 1051 (1288)
..++++.-+. ..|++++|+||.|+|||||+.+++.-.
T Consensus 18 ~~Ld~~~gG~-~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 18 PVLNKLTKGL-RKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ceeeeeeEEE-cCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445554444 678999999999999999999998533
No 477
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.89 E-value=0.0095 Score=66.29 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhh
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~ 1049 (1288)
.+|++++|+||+|+|||||..+++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999998874
No 478
>PRK10869 recombination and repair protein; Provisional
Probab=96.88 E-value=0.006 Score=76.65 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcCCCceEEeee
Q 000778 1092 TELSETALMLSSAT----RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1092 ~e~~~~~~il~~a~----~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~~~~v~~~~~ 1167 (1288)
+++++++.++.++. +|+++|+|||.+|+++.....++ .++..+.+ ++++|++||++.++. +++ +...+..
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~--~~qvi~iTH~~~~~~-~ad--~~~~v~k 507 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGE--STQVMCVTHLPQVAG-CGH--QHFFVSK 507 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc--CCEEEEEecCHHHHH-hCC--EEEEEec
Confidence 56677777766653 68999999999999998666554 56666643 588999999999874 555 3333322
Q ss_pred EEEEecCCCCcceEEEeeEecCCCCCCcHHHHHHHHc-C--CCHHHHHHHHHHH
Q 000778 1168 ACQVGNGVGGVEEVTFLYRLSPGACPKSYGVNVARLA-G--IPDKVLQKAVAKS 1218 (1288)
Q Consensus 1168 ~~~~~~g~~~~~~l~~~ykl~~G~~~~s~g~~vA~~a-G--lP~~vi~~A~~~~ 1218 (1288)
+. . +..+.+-.-.| .+..---++|||+ | +.+.-+..|++..
T Consensus 508 ~~--~----~~~t~s~i~~L----~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 508 ET--D----GGMTETHMQPL----DKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred cc--c----CCeeeEEEEEC----ChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 21 1 11122222233 2223346799998 4 3566788887753
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.84 E-value=0.0081 Score=68.56 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHH-hhcCccccccccccchHHHHHHh---cCchhhHhhcccchHHHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVR---MGAKDHIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~G~~vPa~~~~l~~~d~i~~~---ig~~d~i~~~~Stf~~e~~~~~~il 1101 (1288)
++..++|+||||+||||+++.|+..... .....++-+...+++.+.++-.. ++..-..... ...+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~----~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCC----HHHHHHHHHHH
Confidence 4689999999999999999999865321 11223344443344444444322 2211000000 11222222222
Q ss_pred HhCCCCcEEEEeCCCCCC
Q 000778 1102 SSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1102 ~~a~~~sLvLLDEpg~GT 1119 (1288)
....+.++||+|-||+.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 333468999999998764
No 480
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.82 E-value=0.0056 Score=67.87 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhh------cC-cccccccc-ccchHHHHHHhcCch-hhHhhcc-----cch
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ------VG-ADVPAEIF-EISPVDRIFVRMGAK-DHIMAGQ-----STF 1090 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq------~G-~~vPa~~~-~l~~~d~i~~~ig~~-d~i~~~~-----Stf 1090 (1288)
..|+++.|+||+|+|||||+.+++....... .+ .|+-.+.. ....+.++....+.. +.+.... .+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~- 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN- 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC-
Confidence 5689999999999999999999986554332 11 33333221 111222233322211 1111111 11
Q ss_pred HHHHHHHH-HHHH--hCCCCcEEEEeCCCCCCCh--------HHHHHHH---HHHHHHHHhccCcEEEEEcCCchh
Q 000778 1091 LTELSETA-LMLS--SATRNSLVVLDELGRGTST--------SDGQAIA---ESVLEHFVHKVQCRGLFSTHYHRL 1152 (1288)
Q Consensus 1091 ~~e~~~~~-~il~--~a~~~sLvLLDEpg~GTs~--------~Dg~aia---~aile~l~~~~~~~vl~~TH~~~l 1152 (1288)
..++..+. .+.. ....++||++|-+..=... .+..... ...|..++++.++++|+++|-...
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~ 171 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAK 171 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeee
Confidence 12222221 1111 1457899999998421111 1111211 244666667779999999986543
No 481
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0081 Score=71.15 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=48.8
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcC---ccccccccccchHHHHHH---hcCchhhHhhcccchHHHHHHHHHH
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETALM 1100 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---~~vPa~~~~l~~~d~i~~---~ig~~d~i~~~~Stf~~e~~~~~~i 1100 (1288)
+.+++|+||||+||||++..||... ...| .++-++..+++-++++-+ .+|..-... .+ ..++.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d-~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RD-EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CC-HHHHHHHHHH
Confidence 4689999999999999999999643 2334 234444444444555433 222110000 00 1222222111
Q ss_pred HHhCCCCcEEEEeCCCCCCChH
Q 000778 1101 LSSATRNSLVVLDELGRGTSTS 1122 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GTs~~ 1122 (1288)
+....+.++||+|-+||.-...
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~ 336 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRAS 336 (436)
T ss_pred HHhccCCCEEEEeCccccCcCH
Confidence 2222357999999997754433
No 482
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.78 E-value=0.0015 Score=54.03 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred ccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccC-Cchhhhcc
Q 000778 107 RKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1288)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l 149 (1288)
|..|.+.|++|+.||.|+|.+.++ ++...|.|.| |..|.+.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence 678999999999999999999998 7779999977 99887654
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.77 E-value=0.0072 Score=74.11 Aligned_cols=119 Identities=20% Similarity=0.179 Sum_probs=64.1
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHhhcC---ccccccccccchHHHHHHhcCch-hhHhhcccchHHHHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALM 1100 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G---~~vPa~~~~l~~~d~i~~~ig~~-d~i~~~~Stf~~e~~~~~~i 1100 (1288)
.+|.+++|.|++|+|||||+.+++... ++.| .|+-.+.. ...+..-..++|.. +++..-..+ .+.++...
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~~~ 165 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSET---NWEQICAN 165 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCC---CHHHHHHH
Confidence 578999999999999999999997533 2332 34443321 11111112344432 111111111 12233333
Q ss_pred HHhCCCCcEEEEeCCCCCCC---------hHHHHHHHHHHHHHHHhccCcEEEEEcCCch
Q 000778 1101 LSSATRNSLVVLDELGRGTS---------TSDGQAIAESVLEHFVHKVQCRGLFSTHYHR 1151 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GTs---------~~Dg~aia~aile~l~~~~~~~vl~~TH~~~ 1151 (1288)
+. ..++++|++|....=.. ..+....+ ..|..++++.++++|+++|...
T Consensus 166 i~-~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~-~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 166 IE-EENPQACVIDSIQTLYSPDISSAPGSVSQVRECT-AELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred HH-hcCCcEEEEecchhhcccccccCCCCHHHHHHHH-HHHHHHHHHhCCEEEEEecccc
Confidence 32 35799999998732111 11112222 2344566677999999999643
No 484
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.74 E-value=0.0053 Score=69.04 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=61.9
Q ss_pred cEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCCCC
Q 000778 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1288)
Q Consensus 1028 ~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~~~ 1107 (1288)
..++|.|+.|+|||+|+..|+.-. .+.|..|- .+. +..++..+... |...-.....++..+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~----~it-~~~l~~~l~~~---------~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVL----IIT-VADIMSAMKDT---------FSNSETSEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEE----EEE-HHHHHHHHHHH---------HhhccccHHHHHHHhccC
Confidence 358999999999999999998533 23342221 111 22233322111 110000112244445689
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1108 SLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1108 sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
+||+|||+|.-..+.....+...|+++-... ...+|++|-..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~-~~~tiitSNl~ 205 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSS-KRPTGMLTNSN 205 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCCEEEeCCCC
Confidence 9999999988665554666777788764333 46677777654
No 485
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.72 E-value=0.0044 Score=75.30 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=48.7
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHH--h-cCchhhHhhcccchHHHHHHHHHH
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFV--R-MGAKDHIMAGQSTFLTELSETALM 1100 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~--~-ig~~d~i~~~~Stf~~e~~~~~~i 1100 (1288)
+++++|+||+|+||||++-.|+....+.+ ...+|.++..+.+..+++.. + ++..-.... ...++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~-------~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY-------DPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC-------CHHhHHHH
Confidence 56899999999999999998886443112 22344444433333333321 1 221110000 11234444
Q ss_pred HHhCCCCcEEEEeCCCCCC
Q 000778 1101 LSSATRNSLVVLDELGRGT 1119 (1288)
Q Consensus 1101 l~~a~~~sLvLLDEpg~GT 1119 (1288)
+....+.++||+|.||+.-
T Consensus 294 l~~~~~~DlVlIDt~G~~~ 312 (424)
T PRK05703 294 LEQLRDCDVILIDTAGRSQ 312 (424)
T ss_pred HHHhCCCCEEEEeCCCCCC
Confidence 5555678999999997643
No 486
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.72 E-value=0.0059 Score=72.88 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHh-hcCccccccccccchHHHHHHhcCch-hhHhhcccchHHHHHHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-q~G~~vPa~~~~l~~~d~i~~~ig~~-d~i~~~~Stf~~e~~~~~~il~ 1102 (1288)
.+|.+++|.|++|+|||||+.+++...... ....|+-.+.. ...+..-..++|.. +++.....+ .+.++...+.
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~---~le~I~~~i~ 155 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAET---NLEDILASIE 155 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccC---cHHHHHHHHH
Confidence 568999999999999999999998533221 12234443321 11111123455532 222111111 1222322222
Q ss_pred hCCCCcEEEEeCCCC----CCC-----hHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1103 SATRNSLVVLDELGR----GTS-----TSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~----GTs-----~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..+|++|++|+... ..+ ......++ ..|..++++.++++|++.|-.
T Consensus 156 -~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~-~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 156 -ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECT-AELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred -hcCCcEEEEcchHHhhccccccCCCCHHHHHHHH-HHHHHHHHHcCCeEEEEeecc
Confidence 35899999999721 110 01111222 234455566799999998853
No 487
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.70 E-value=0.002 Score=56.44 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.4
Q ss_pred ccccceEEeecCCCcEEeEEEEeeeCCCCcEEEEccC
Q 000778 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD 141 (1288)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 141 (1288)
-+|..|.|+|+.++.||.|+|+.++. .++|.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 38999999999999999999999998 6679999987
No 488
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.68 E-value=0.0041 Score=70.78 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=25.6
Q ss_pred cccccccCCCCCCcEEEEEecCCCChhHHHhhhhh
Q 000778 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1015 v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~ 1049 (1288)
+.+.+...+.....+++|+||||+||||+++.++.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444323345899999999999999999874
No 489
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0072 Score=74.06 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=50.9
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhh---cCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq---~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~ 1102 (1288)
.|.+++|+||+|+||||++..|+......+ ...++..+..+++-.+++... +..-.+ .... ......+..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y-a~iLgv--~v~~-a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY-GRQLGI--AVHE-ADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh-hcccCc--eeEe-cCcHHHHHHHHH
Confidence 468999999999999999999986544322 223445544444433433221 100000 0000 001123444555
Q ss_pred hCCCCcEEEEeCCCCC
Q 000778 1103 SATRNSLVVLDELGRG 1118 (1288)
Q Consensus 1103 ~a~~~sLvLLDEpg~G 1118 (1288)
...+.++||+|.+|++
T Consensus 425 ~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 425 RLRDYKLVLIDTAGMG 440 (559)
T ss_pred HhccCCEEEecCCCcc
Confidence 5567899999999875
No 490
>PRK08181 transposase; Validated
Probab=96.66 E-value=0.0074 Score=68.91 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhCC
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a~ 1105 (1288)
.+.-++|+||.|+|||.|+..|+..+. +.|..|-. +. ...++..+.... ... .....+....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f----~~-~~~L~~~l~~a~----~~~-------~~~~~l~~l~ 166 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLF----TR-TTDLVQKLQVAR----REL-------QLESAIAKLD 166 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceee----ee-HHHHHHHHHHHH----hCC-------cHHHHHHHHh
Confidence 345699999999999999999985443 23432211 11 233444332111 000 1122344456
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCc
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
.++||||||+|.-........+...++++..++ +.+|++|...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 889999999987655555555666777765443 5678888764
No 491
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.64 E-value=0.003 Score=76.22 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=67.9
Q ss_pred ccCCCCCCcEEEEEecCCCChhHHHhhhhhHHHHhhcCcc--ccccccccc-hHHHHHHhcCchhh-HhhcccchHHHHH
Q 000778 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--VPAEIFEIS-PVDRIFVRMGAKDH-IMAGQSTFLTELS 1095 (1288)
Q Consensus 1020 ~l~~~~~g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~--vPa~~~~l~-~~d~i~~~ig~~d~-i~~~~Stf~~e~~ 1095 (1288)
.+.+ .+|+.++|.|+||+|||||+++|++..- +..|.+ +......+. ++...+..-|.... +....+.-+..++
T Consensus 150 ll~I-~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r 227 (432)
T PRK06793 150 MLTI-GIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ 227 (432)
T ss_pred ccee-cCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH
Confidence 4777 6789999999999999999999997432 122211 111111111 11112211111111 1112222233333
Q ss_pred H-HHHH-------HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhhhhhcC
Q 000778 1096 E-TALM-------LSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKK 1158 (1288)
Q Consensus 1096 ~-~~~i-------l~~a~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~~~~~~ 1158 (1288)
. .+.+ ++....+-|||||+| |...+........+...-.. |-+..+.||...+......
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDsl---Tr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSV---TRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecch---HHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhcc
Confidence 2 2222 223378999999999 55554432222233333222 5666777886666666543
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.61 E-value=0.013 Score=64.06 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=61.7
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHH-hhcCccccccccccchHHHHHHhcCc-hhhHhhc-----ccchHHHHHHH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVRMGA-KDHIMAG-----QSTFLTELSET 1097 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~il-aq~G~~vPa~~~~l~~~d~i~~~ig~-~d~i~~~-----~Stf~~e~~~~ 1097 (1288)
..|.++.|+||+|+||||+..+++..... .+...|+..+. +. .+++...... .+..... ...+......+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~--~~-~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG--LS-PERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CC-HHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 56899999999999999999888753322 22335555543 11 1222221110 0111000 01111111112
Q ss_pred HHHHHhC--CCCcEEEEeCCCCCCChH---H---HH-HHH--HHHHHHHHhccCcEEEEEcCCc
Q 000778 1098 ALMLSSA--TRNSLVVLDELGRGTSTS---D---GQ-AIA--ESVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1098 ~~il~~a--~~~sLvLLDEpg~GTs~~---D---g~-aia--~aile~l~~~~~~~vl~~TH~~ 1150 (1288)
..+...+ ..+++|++|-...=.... + .. .+. ...|..++++.++++|++.|-.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 2222222 378999999984211100 0 01 111 1235556667799999998854
No 493
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.61 E-value=0.004 Score=71.77 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=48.8
Q ss_pred CCcEEEEEecCCCChhHHHhhhhhHHHHh---hcCccccccccccchHHHHHH--h-cCchhhHhhcccchHHHHHHHHH
Q 000778 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA---QVGADVPAEIFEISPVDRIFV--R-MGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1026 ~g~~~~ItGpNgsGKSTlLr~i~~i~ila---q~G~~vPa~~~~l~~~d~i~~--~-ig~~d~i~~~~Stf~~e~~~~~~ 1099 (1288)
.+.+++|+||+|+||||++..++...... ...+++.++..+.+..+++.. + +|..-... . .-..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~----~---~~~~l~~ 265 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA----R---DPKELRK 265 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceecc----C---CHHHHHH
Confidence 46799999999999999999888544322 223455655544444443322 1 12110000 0 1123344
Q ss_pred HHHhCCCCcEEEEeCCC
Q 000778 1100 MLSSATRNSLVVLDELG 1116 (1288)
Q Consensus 1100 il~~a~~~sLvLLDEpg 1116 (1288)
++..+...++||+|.+|
T Consensus 266 ~l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 266 ALDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHHccCCCEEEEeCCC
Confidence 45555678999999985
No 494
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.59 E-value=0.011 Score=71.37 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHhhhhh
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~ 1049 (1288)
+.-++|.||+|+|||++.|.++.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999985
No 495
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.59 E-value=0.0042 Score=84.99 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLA 1050 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i 1050 (1288)
..+++++|+||+|.|||||+|.++.-
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHH
Confidence 46789999999999999999999753
No 496
>PF13173 AAA_14: AAA domain
Probab=96.58 E-value=0.0082 Score=60.61 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=54.4
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCccccccccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHh-CC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS-AT 1105 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~-a~ 1105 (1288)
+++++|+||-|+||||++++++.-.+...-..|+... +.-+......+ + ...++.. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~-------~~~~~~~~~~~--------~------~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFD-------DPRDRRLADPD--------L------LEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccC-------CHHHHHHhhhh--------h------HHHHHHhhcc
Confidence 4789999999999999999998432211111222211 11110000000 0 1111221 13
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhcc-CcEEEEEcCCchhh
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKV-QCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1106 ~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~-~~~vl~~TH~~~l~ 1153 (1288)
...+|+|||. ....+ ....++.+.+.. ++.+++++......
T Consensus 61 ~~~~i~iDEi---q~~~~----~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEI---QYLPD----WEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehh---hhhcc----HHHHHHHHHHhccCceEEEEccchHHH
Confidence 7899999999 33332 234555665543 57888888876554
No 497
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.58 E-value=0.0011 Score=79.86 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=29.8
Q ss_pred cccccccccCCCCCCcEEEEEecCCCChhHHHh
Q 000778 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLR 1045 (1288)
Q Consensus 1013 ~~v~ndi~l~~~~~g~~~~ItGpNgsGKSTlLr 1045 (1288)
..++.+|++.+ .+|++++|+||+|||||||||
T Consensus 19 ~~vL~~Vsl~i-~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKEL-PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceee-cCCCEEEEECCCCCCHHHHHh
Confidence 36789999998 789999999999999999999
No 498
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.57 E-value=0.01 Score=65.93 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred CCCcEEEEEecCCCChhHHHhhhhhHHHHh-hcCccccccccccchHHHHHHhcCchhhHhhcc---cchH-HHHHH-HH
Q 000778 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ---STFL-TELSE-TA 1098 (1288)
Q Consensus 1025 ~~g~~~~ItGpNgsGKSTlLr~i~~i~ila-q~G~~vPa~~~~l~~~d~i~~~ig~~d~i~~~~---Stf~-~e~~~-~~ 1098 (1288)
..|.++.|+||.|+||||+..+++.-.... ....|+-.+......+.++... . .+.+.... ..+. .++.+ +.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGE-D-FEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhh-C-hHhHhhCeEEEeCCCHHHHHHHHH
Confidence 568999999999999999999987543322 2335555541111112222211 0 01111110 0011 12211 11
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCCh-----HH----HHHHHH--HHHHHHHhccCcEEEEEcCCc
Q 000778 1099 LMLSSA-TRNSLVVLDELGRGTST-----SD----GQAIAE--SVLEHFVHKVQCRGLFSTHYH 1150 (1288)
Q Consensus 1099 ~il~~a-~~~sLvLLDEpg~GTs~-----~D----g~aia~--aile~l~~~~~~~vl~~TH~~ 1150 (1288)
.+...+ .++++|++|-+.+=... .+ ...+.. ..|..++++.++++|++.|-.
T Consensus 99 ~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~ 162 (225)
T PRK09361 99 KAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVY 162 (225)
T ss_pred HHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccce
Confidence 222111 68999999998321111 11 111221 224555667799999998854
No 499
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.54 E-value=0.0044 Score=83.93 Aligned_cols=79 Identities=13% Similarity=-0.018 Sum_probs=57.0
Q ss_pred hcccchHHHHHH-HHHHHHhCC----------CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcCCchhh
Q 000778 1085 AGQSTFLTELSE-TALMLSSAT----------RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLA 1153 (1288)
Q Consensus 1085 ~~~Stf~~e~~~-~~~il~~a~----------~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH~~~l~ 1153 (1288)
....++++++.. ++.+++++. +|.+||||||+.|.|+..... +..+|..+.. .|++|+++||+.++.
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~-~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDR-AIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHH-HHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence 445677766643 444444332 799999999988888875544 4467777865 588999999999999
Q ss_pred hhhcCCCceEEeee
Q 000778 1154 VDYKKDPRVSLCHM 1167 (1288)
Q Consensus 1154 ~~~~~~~~v~~~~~ 1167 (1288)
..+++ +|.++..
T Consensus 1024 ~~~~~--~i~v~~~ 1035 (1042)
T TIGR00618 1024 ERIPH--RILVKKT 1035 (1042)
T ss_pred HhhCC--EEEEEEC
Confidence 99888 6655543
No 500
>PRK13764 ATPase; Provisional
Probab=96.53 E-value=0.0097 Score=74.62 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCChhHHHhhhhhHHHHhhcCccc-ccc-ccccchHHHHHHhcCchhhHhhcccchHHHHHHHHHHHHhC
Q 000778 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAE-IFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1288)
Q Consensus 1027 g~~~~ItGpNgsGKSTlLr~i~~i~ilaq~G~~v-Pa~-~~~l~~~d~i~~~ig~~d~i~~~~Stf~~e~~~~~~il~~a 1104 (1288)
...++|+||.||||||+++.++... ...|..| --+ ...+.+-.. ...+ ......+..++..+ +.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i--~~~~riV~TiEDp~El~~~~~-i~q~----------~~~~~~~~~~~~~l-LR 322 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFY--ADMGKIVKTMESPRDLQVPPE-ITQY----------SKLEGSMEETADIL-LL 322 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH--hhCCCEEEEECCCccccCCCc-ceEE----------eeccccHHHHHHHH-Hh
Confidence 4558999999999999999988533 2333332 111 011111000 0000 00001122222222 45
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhccCcEEEEEcC---------------CchhhhhhcCCCceEEeeeEE
Q 000778 1105 TRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTH---------------YHRLAVDYKKDPRVSLCHMAC 1169 (1288)
Q Consensus 1105 ~~~sLvLLDEpg~GTs~~Dg~aia~aile~l~~~~~~~vl~~TH---------------~~~l~~~~~~~~~v~~~~~~~ 1169 (1288)
.+|+++|+||+ || ..+ +.++..+.. .|..++.+.| ++..+....+ .|+.++.|.
T Consensus 323 ~rPD~IivGEi-Rd--~Et-----~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID--~IV~I~~G~ 391 (602)
T PRK13764 323 VRPDYTIYDEM-RK--TED-----FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVD--TVIFIEDGE 391 (602)
T ss_pred hCCCEEEECCC-CC--HHH-----HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhc--EEEEEeCCE
Confidence 78999999999 23 322 222333322 2556777888 4444444455 677777776
Q ss_pred E
Q 000778 1170 Q 1170 (1288)
Q Consensus 1170 ~ 1170 (1288)
+
T Consensus 392 I 392 (602)
T PRK13764 392 V 392 (602)
T ss_pred E
Confidence 6
Done!