Query 000778
Match_columns 1288
No_of_seqs 636 out of 3999
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:26:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000778.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_549-552//hhsearch_pdb/000778hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 1.0 1 1 1441.2 83.7 925 278-1225 18-989 (1022)
2 3thx_B DNA mismatch repair pro 1.0 1 1 1243.8 78.7 840 324-1227 10-883 (918)
3 1wb9_A DNA mismatch repair pro 1.0 1 1 1166.6 77.4 786 322-1223 2-798 (800)
4 1ewq_A DNA mismatch repair pro 1.0 1 1 1116.4 74.7 747 325-1223 11-764 (765)
5 3thx_A DNA mismatch repair pro 1.0 1 1 1114.8 77.2 875 325-1281 14-916 (934)
6 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 150.9 14.5 172 993-1175 4-222 (359)
7 3rlf_A Maltose/maltodextrin im 1.0 1 1 150.3 12.0 171 994-1175 4-217 (381)
8 3tui_C Methionine import ATP-b 1.0 1 1 150.2 15.2 178 991-1175 22-247 (366)
9 4g1u_C Hemin import ATP-bindin 1.0 1 1 148.1 12.4 172 992-1174 10-230 (266)
10 3gfo_A Cobalt import ATP-bindi 1.0 1 1 147.3 13.8 173 992-1174 6-226 (275)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=1441.22 Aligned_cols=925 Identities=41% Similarity=0.697 Sum_probs=773.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 65321111000134564698-87745799999999998778889200037998999999998519993999960855998
Q 000778 278 GDVSERFSAREADKFHFLGP-DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYEL 356 (1288)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~~~~ydp~Tl~iP~~~~~~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEl 356 (1288)
|+..+++..|.|++|+||++ +|||++||||+||+|||||||||+++|+++||||||||+||++|||+||||||||||||
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYEl 97 (1022)
T 2o8b_B 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL 97 (1022)
T ss_dssp ------CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEE
T ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf 77544565662116400184544100289999999998755378211001898999999978758998999977977998
Q ss_pred ECCCHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC---CCCCEEEEEEEE
Q ss_conf 21019987522324541299985776744175899999982995999913699588999763118---888604555788
Q 000778 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVVKREICA 433 (1288)
Q Consensus 357 y~~DA~i~ak~L~L~~~~g~~~~~GfPe~~l~~~~~~Lv~~GyKVavveQ~Et~~~~~~r~~~~~---~k~kvv~Rev~~ 433 (1288)
|++||++++++|+|++|+|++||||||+|+++.|+++||++|||||||||+|+|.+++.|.+.++ +++++|+|+||+
T Consensus 98 f~~DA~~~a~~L~i~lt~~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~r 177 (1022)
T 2o8b_B 98 YHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 177 (1022)
T ss_dssp EHHHHHHHHHHHCCCCCSSSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEE
T ss_pred EHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 44159999985094872288777898560799999999987996999948898035445443203555568853651799
Q ss_pred EEECCCEEECCC---CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 840761111566---68999985899999468999888999889999997677819999972862056799998703962
Q 000778 434 VVTKGTLTEGEL---LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPV 510 (1288)
Q Consensus 434 IiTpGTl~d~~~---l~~~~~~~yllaI~e~~~~~~~~~~~~~iGia~vD~stge~~l~qf~Dd~~~s~L~t~L~~l~P~ 510 (1288)
||||||++++.+ +. ...++||+||++..... .+....||+||+|++||+|++++|.|+..+++|.+.|.+++|+
T Consensus 178 vvTpGT~~d~~~~~~l~-~~~~n~l~ai~~~~~~~--~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~ 254 (1022)
T 2o8b_B 178 IITKGTQTYSVLEGDPS-ENYSKYLLSLKEKEEDS--SGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 254 (1022)
T ss_dssp EECTTSCCCCTTSCCCS-CSSCCEEEEEEEEECSC--C-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEE
T ss_pred EECCCEEECCCCCCCCC-CCCCCEEEEEEECCCCC--CCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 98898666543234446-77786899999823566--6777679999999877879999942841799999999842984
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8992599999478999985038873123467854567356699999--99721012221222422224345689986651
Q 000778 511 EIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK--NIYNRITAESLNKADSNVANSQAEGDGLTCLP 588 (1288)
Q Consensus 511 EIi~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 588 (1288)
|||++.+..+..+.+.+.......+...+.+..+||+...+...+. .+|..... ......||
T Consensus 255 Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~----------------~~~~~~~~ 318 (1022)
T 2o8b_B 255 QVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLS----------------DGIGVMLP 318 (1022)
T ss_dssp EEEEETTTCCHHHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSC----------------CCC-CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCC----------------CCCCHHHH
T ss_conf 89955776666788988753114445303663011005667765435543044222----------------11102358
Q ss_pred HHHHHHHCC----C----CCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCC----------CCCCCCCCEECC
Q ss_conf 134643105----9----9805899999999999999614100101234000478887----------667988906509
Q 000778 589 GILSELIST----G----DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF----------GDMAKKPYMVLD 650 (1288)
Q Consensus 589 ~~l~~l~~~----~----~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~----------~~~~~~~~M~LD 650 (1288)
..+..+... + .+..++++|+|++++||+.++++..++..++|..+..... ......++|.||
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD 398 (1022)
T 2o8b_B 319 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLD 398 (1022)
T ss_dssp HHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCC
T ss_pred HHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99987410122116654325389999999999999996721222113554420564201222222221114778859838
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 98898502443457899855588887631294999999997308899999999999999988619913699999950999
Q 000778 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1288)
Q Consensus 651 ~~Tl~~LEI~~n~~~g~~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~I~~RldaVe~L~~~n~~~~~~lr~~Lk~l 730 (1288)
++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|++|||+|++|+. +...+..++..|+++
T Consensus 399 ~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~-~~~~~~~l~~~L~~i 477 (1022)
T 2o8b_B 399 AVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKL 477 (1022)
T ss_dssp HHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHCC
T ss_conf 8999862477457899988808987175789564899999985746799999999999999983-958999999997048
Q ss_pred CCHHHHHHHHHCCCCC---CCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC--
Q ss_conf 9899999998625334---68788630223898--8999999999984329999998789898720063668764338--
Q 000778 731 PDMERLLARLFASSEA---NGRNSNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTP-- 803 (1288)
Q Consensus 731 pDleRll~ri~~~~~~---~~~~~~~~~~~~~~--~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~-- 803 (1288)
|||||+++|++..+.. ..++..++++|++. ..+++.++...+.++..+..+...+........+.++..+...
T Consensus 478 ~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~ 557 (1022)
T 2o8b_B 478 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557 (1022)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTT
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 66899999997427754333452023333333111544499999999999999999999986430257699999997430
Q ss_pred ---CCCCHHHHHHHHHHHHHHCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf ---99941499999999964124753079953507999954799999999999999999999998816987208986772
Q 000778 804 ---GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880 (1288)
Q Consensus 804 ---~~~~~~i~~~l~~~~~~~d~~~~~~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~l~~~~~~l~~~~i~~~~~~~~ 880 (1288)
...++++.+.+..+..+||...+.+.|.+++++|++++||.++..+.+++++|.+++.++++.++..+++|+++++.
T Consensus 558 ~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 637 (1022)
T 2o8b_B 558 KNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN 637 (1022)
T ss_dssp TSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 24444507799999999987280434118967447999988999999999999999999999999849986357874276
Q ss_pred EEEEECCCCCCCC-CCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1443143211388-898579973002708982857999999989999999999999999998999863589999999999
Q 000778 881 LYLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959 (1288)
Q Consensus 881 ~y~iev~~~~~~~-~p~~~~~~ss~k~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ia 959 (1288)
+|+|+|+...... +|++|+..+++++..||+||++.++..++..+++++...+..++.++...+.++...|..+.++++
T Consensus 638 ~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 638 RYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred EEEEEEEHHHHCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69999744552155897348865136850796157889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCEEEE
Q ss_conf 9998986889751159995330231799999880898407977211246999820133442278888-------827999
Q 000778 960 ELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGN-------ASFILL 1032 (1288)
Q Consensus 960 ~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~-------~~~~~I 1032 (1288)
+|||++|+|.+|.....+||||+|++. .++.+.|.++++|||+++.. ..++.+|+||++|+. .. |++++|
T Consensus 718 ~lD~l~s~A~~a~~~~~~~~~P~~~~~-~~~~~~l~i~~~rHP~l~~~-~~~~~~v~ndi~l~~-~~~~~~~~~g~i~~I 794 (1022)
T 2o8b_B 718 VLDVLLCLANYSRGGDGPMCRPVILLP-EDTPPFLELKGSRHPCITKT-FFGDDFIPNDILIGC-EEEEQENGKAYCVLV 794 (1022)
T ss_dssp HHHHHHHHHHHTTCSSSCEECCEECCT-TTSCCCEEEEEECCCC-------CCCCCCEEEEESC-CCSCC---CCCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEEECCCCEEEEE-ECCCCEEEEEEEECC-CCCCCCCCCCCEEEE
T ss_conf 999999579998643678517754567-79986399992625579999-558955754455335-544455778848999
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 94289971388862234898844086224654443318899873080226762001128999999999993999949999
Q 000778 1033 TGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVL 1112 (1288)
Q Consensus 1033 tGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~sLvLl 1112 (1288)
|||||||||||||++|++.+|+|+|+|||+..+.++++|+||+++|..|++..+.|+|++||.+++.|+.++++++||||
T Consensus 795 tGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 795 TGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLV 874 (1022)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88999986899999988999866268852676779799999997697788861543328999999999974889968999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECC--CCCCCEEEEEEEECCC
Q ss_conf 48999999588999999999999742694899991890136630289862785647997068--8785507773675289
Q 000778 1113 DELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG--VGGVEEVTFLYRLSPG 1190 (1288)
Q Consensus 1113 DE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~--~~~~~~i~~ly~l~~G 1190 (1288)
||||+|||+.||.++++++++++.++.++++||+|||++++..++++..|.+.||.+..... .++.+.+.|+|++.+|
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G 954 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKG 954 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESS
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf 79988898678999999999999864799899996989999985785431527699997057233787735888532479
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89986889999995999999999999999999986
Q 000778 1191 ACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIY 1225 (1288)
Q Consensus 1191 ~~~~s~g~~vA~~aGlp~~vi~~A~~~~~~~e~~~ 1225 (1288)
.+++|||++||+++|+|.+||++|++++.++|...
T Consensus 955 ~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~~ 989 (1022)
T 2o8b_B 955 ACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMN 989 (1022)
T ss_dssp CCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSST
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99987999999980979999999999999999788
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=1243.80 Aligned_cols=840 Identities=30% Similarity=0.460 Sum_probs=672.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHHCCEEEEC-CCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 037998999999998519993999960855998210199875223245412-9998577674417589999998299599
Q 000778 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-GEQPHCGFPERNFSMNVEKLARKGYRVL 402 (1288)
Q Consensus 324 ~~~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEly~~DA~i~ak~L~L~~~~-g~~~~~GfPe~~l~~~~~~Lv~~GyKVa 402 (1288)
..++||||||||+||++|||+|||||||||||||++||++++++|+|+++. +++||||||+|+++.|+.+||++|||||
T Consensus 10 ~~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~~~~pmaGvP~ha~~~yl~rLv~~G~kVa 89 (918)
T 3thx_B 10 KSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVG 89 (918)
T ss_dssp CTTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEETTEEEEEEEGGGHHHHHHHHHHHTCCEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCEEECCCCEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 88999899999999987899599998487766507569999997290640579712772337678999999997699589
Q ss_pred EEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEECCC---------------CCCCCCCCEEEEEEECCCCCCC
Q ss_conf 9913699588999763118888604555788840761111566---------------6899998589999946899988
Q 000778 403 VVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL---------------LSANPDASYLMALTESNQSPAS 467 (1288)
Q Consensus 403 vveQ~Et~~~~~~r~~~~~~k~kvv~Rev~~IiTpGTl~d~~~---------------l~~~~~~~yllaI~e~~~~~~~ 467 (1288)
||||+|+|..++ .+++|.++|+|+||+||||||++++++ +. +..++||+||.+...+...
T Consensus 90 i~eQ~E~p~~k~----~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~-~~~~nyL~ai~~~~~~~~~ 164 (918)
T 3thx_B 90 VVKQTETAALKA----IGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMT-DTSTSYLLCISENKENVRD 164 (918)
T ss_dssp EEEECSCHHHHT----TSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSC-TTSCCCEEEEEEEC-----
T ss_pred EEECCCCHHHHH----CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEECCCCCCC
T ss_conf 995257766651----12456785566688997787311631012112333222112467-8887679999964555545
Q ss_pred -CCCCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CC-CCCCCCCC
Q ss_conf -8999889999997677819999972862056799998703962899259999947899998503----88-73123467
Q 000778 468 -QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT----RN-PLVNDLVP 541 (1288)
Q Consensus 468 -~~~~~~iGia~vD~stge~~l~qf~Dd~~~s~L~t~L~~l~P~EIi~~~~~ls~~t~~~l~~~~----~~-~~~~~~~~ 541 (1288)
......||+||+|++||+|.+++|.|+..+++|.+.|.+++|+|||++.+ ++..+.+++.... .. ....+..+
T Consensus 165 ~~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (918)
T 3thx_B 165 KKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMD 243 (918)
T ss_dssp ----CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHHHHSSCSSSCCEEEEEC
T ss_pred CCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 455686599999986677389999448405999999998569869995687-5557899998630000146631578545
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 85456735669999999721012221222422224345689986651134643105998058999999999999996141
Q 000778 542 LSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLD 621 (1288)
Q Consensus 542 ~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~ 621 (1288)
..+|+...+.+.+..+|..... .+.+. ..+..+.. ....+++|+|++++||+.+.++
T Consensus 244 -~~~f~~~~a~~~l~~~f~~~~l---------------~~~g~----~~~~~~~~---~~~~~~~A~gall~Yl~~~~~~ 300 (918)
T 3thx_B 244 -NIYFEYSHAFQAVTEFYAKDTV---------------DIKGS----QIISGIVN---LEKPVICSLAAIIKYLKEFNLE 300 (918)
T ss_dssp -GGGTSHHHHHHHHHHHCC---------------------------------CCC---CCHHHHHHHHHHHHHHHHTTCG
T ss_pred -CCCCCHHHHHHHHHHHHCCCCC---------------CCCCC----HHHHHHHC---CCHHHHHHHHHHHHHHHHHCCC
T ss_conf -1115756799999998385642---------------11240----34543301---4389999999999999996411
Q ss_pred HHHCCCCCCEECCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 00101234000478887667988906509988985024434578998555888876312949999999973088999999
Q 000778 622 ETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701 (1288)
Q Consensus 622 ~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~g~~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~ 701 (1288)
..+....+|..|. ...++|.||++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.
T Consensus 301 ~~l~~~~~~~~~~-------~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~ 373 (918)
T 3thx_B 301 KMLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLRE 373 (918)
T ss_dssp GGGSCGGGEEESC-------CTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHH
T ss_pred CCCCCCCCCEEEC-------CCCCEEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 2323443321532-------778879987899974377636899988876999984277968999999987582789999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988619913699999950999989999999862533468788630223898899999999998432999999
Q 000778 702 IRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQA 781 (1288)
Q Consensus 702 I~~RldaVe~L~~~n~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~ 781 (1288)
|+.|||+|++|...+...+..+|..|+++||+||+++|++.+.. ..+++..+...|..+....+
T Consensus 374 I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~---------------~~~dl~~l~~~l~~l~~~l~- 437 (918)
T 3thx_B 374 INARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC---------------STQEFFLIVKTLYHLKSEFQ- 437 (918)
T ss_dssp HHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC---------------CHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCC---------------CHHHHHHHHHHHHHHHHHHH-
T ss_conf 99999999999847957899999987268657788887603768---------------88999999999999999999-
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHC--CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8789898720063668764338999414999999999641247530--79953507999954799999999999999999
Q 000778 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEAN--NSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859 (1288)
Q Consensus 782 ~~~l~~~l~~~~s~~l~~l~~~~~~~~~i~~~l~~~~~~~d~~~~~--~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~ 859 (1288)
..+..+.....+.++..+.. .++++...+..+.+.++..... ..+.++......+++...+..+..++..++++
T Consensus 438 -~~l~~~~~~~~~~lL~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 513 (918)
T 3thx_B 438 -AIIPAVNSHIQSDLLRTVIL---EIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMH 513 (918)
T ss_dssp -HHHHHHHHTCCCHHHHHHHT---HHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -99887652025789999997---55566789999999987766442774200024322777999999999999999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999881698720898677214431432113888985799730027089828579999999899999999999999999
Q 000778 860 LKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1288)
Q Consensus 860 l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~~p~~~~~~ss~k~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~ 939 (1288)
+++.++.+...++.|.++.+.+|+|+|+....+.+|++|+..+++++..||+||+++++++++..++++....+...+.+
T Consensus 514 l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~ 593 (918)
T 3thx_B 514 LQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLD 593 (918)
T ss_dssp HHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCEEEEEECHHHHHHCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999874756643685128789999737877019984899983477259977899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999863589999999999999898688975115999533023179999988089840797721124699982013344
Q 000778 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1288)
Q Consensus 940 l~~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi 1019 (1288)
++..+.++...|..+++++++|||++|||.+|.. .+||||+|++. ..|.|+++|||+++.....++.+||||+
T Consensus 594 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~~~V~ndv 666 (918)
T 3thx_B 594 FLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQEE-----RKIVIKNGRHPVIDVLLGEQDQYVPNNT 666 (918)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCBCCEEESS-----CEEEEEEECCHHHHHHTCSCSSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCC-----CCEEEEECCCHHHHHHHCCCCCEECCCC
T ss_conf 9999998899999999999999999999999734--89747754688-----8479972565212223136895661566
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 22788888279999428997138886223489884408622465444331889987308022676200112899999999
Q 000778 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1288)
Q Consensus 1020 ~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~ 1099 (1288)
+|+. ..|++++||||||||||||||+++++++|+|+|++||+..+.+++++++|+++|..|++..+.|+|+++|.+++.
T Consensus 667 sl~~-~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 667 DLSE-DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAE 745 (918)
T ss_dssp EECT-TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHH
T ss_pred CCCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2347-887089998999876589999998878886247634521112259999998678588999868776589999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCC-EEEEEEEEEEECCC---
Q ss_conf 99939999499994899999958899999999999974269489999189013663028986-27856479970688---
Q 000778 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPR-VSLCHMACQVGNGV--- 1175 (1288)
Q Consensus 1100 il~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~-v~~~~~~~~v~~~~--- 1175 (1288)
|+..+++|+||||||||+|||+.++.++++++++++.++.++++||+|||++++......+. |.++||.+.+.+..
T Consensus 746 il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~ 825 (918)
T 3thx_B 746 IIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKL 825 (918)
T ss_dssp HHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC------
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
T ss_conf 99866699789996898899989999999999999998249869999476899999862514467899999971564333
Q ss_pred ------CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------7855077736752898998688999999599999999999999999998611
Q 000778 1176 ------GGVEEVTFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGK 1227 (1288)
Q Consensus 1176 ------~~~~~i~~ly~l~~G~~~~s~g~~vA~~aGlp~~vi~~A~~~~~~~e~~~~~ 1227 (1288)
...+.++|+|+|.+|+|++|||++||+++|+|++||++|++++.+||.....
T Consensus 826 ~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~~~~ 883 (918)
T 3thx_B 826 DPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINT 883 (918)
T ss_dssp -----------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 4443457888345863562289987489999998296999999999999999999999
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=1166.60 Aligned_cols=786 Identities=27% Similarity=0.434 Sum_probs=659.6
Q ss_pred CCCC---CCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHHCCEEEECC------CCCCCCCCCCCHHHHHH
Q ss_conf 0003---79989999999985199939999608559982101998752232454129------99857767441758999
Q 000778 322 DFLR---NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVE 392 (1288)
Q Consensus 322 ~~~~---~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEly~~DA~i~ak~L~L~~~~g------~~~~~GfPe~~l~~~~~ 392 (1288)
++|+ ++||||+|||+||++|||+|||||||||||+|++||++++++|+|++|++ ++||||||+|+++.|++
T Consensus 2 ~~~~~~~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~ 81 (800)
T 1wb9_A 2 SAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLA 81 (800)
T ss_dssp CCCCCGGGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 62102668997999999978758998999976977998266699999971918851356788867716887899999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 99982995999913699588999763118888604555788840761111566689999858999994689998889998
Q 000778 393 KLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDR 472 (1288)
Q Consensus 393 ~Lv~~GyKVavveQ~Et~~~~~~r~~~~~~k~kvv~Rev~~IiTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~ 472 (1288)
+||++|||||||||+|+|.. ..++|+|+||+|+||||+++++++.. ..++||+||++.. .
T Consensus 82 ~Lv~~G~kVai~eQ~e~~~~----------~k~~v~R~v~~v~TpGT~~~~~~l~~-~~~n~l~ai~~~~---------~ 141 (800)
T 1wb9_A 82 KLVNQGESVAICEQIGDPAT----------SKGPVERKVVRIVTPGTISDEALLQE-RQDNLLAAIWQDS---------K 141 (800)
T ss_dssp HHHHTTCCEEEEEECSCGGG----------CSSSCCEEEEEEECTTTCCCGGGSCT-TSCCCEEEEEECS---------S
T ss_pred HHHHCCCEEEEEECCCCCCC----------CCCCCEEEEEEEECCCCCCCCCCCCC-CCCCEEEEEEECC---------C
T ss_conf 99977985999980588311----------47852488999866972214444567-7773899999869---------8
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 89999997677819999972862056799998703962899259999947899998503887312346785456735669
Q 000778 473 CFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV 552 (1288)
Q Consensus 473 ~iGia~vD~stge~~l~qf~Dd~~~s~L~t~L~~l~P~EIi~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~ 552 (1288)
.||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+.. +... ...+. ..+ ..+|+...+.
T Consensus 142 ~~Gla~~D~stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~~----l~~~--~~~~~-~~~-~~~f~~~~~~ 210 (800)
T 1wb9_A 142 GFGYATLDISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEMS----LIEG--RRGLR-RRP-LWEFEIDTAR 210 (800)
T ss_dssp CEEEEEECTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCGG----GTTT--CSSEE-EEC-GGGGCHHHHH
T ss_pred EEEEEEEECCCCEEEEEEECC---HHHHHHHHHHCCCEEEEECCCCCHHH----HHHC--CCCEE-ECC-CCCCCHHHHH
T ss_conf 899999998777799998168---99999999735983999748877688----8520--56148-866-1016855799
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEE
Q ss_conf 99999972101222122242222434568998665113464310599805899999999999999614100101234000
Q 000778 553 LEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL 632 (1288)
Q Consensus 553 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~ 632 (1288)
..+..+|.... + ..+.. .+...+++|+|+++.||+.+... .+.+...+..
T Consensus 211 ~~l~~~~~~~~-----------------------l----~~~~~--~~~~~~~~a~gall~Yl~~~~~~-~~~~~~~~~~ 260 (800)
T 1wb9_A 211 QQLNLQFGTRD-----------------------L----VGFGV--ENAPRGLCAAGCLLQYAKDTQRT-TLPHIRSITM 260 (800)
T ss_dssp HHHHHHHTCSC-----------------------S----GGGTC--TTCHHHHHHHHHHHHHHHHHHCS-CCTTCCCCEE
T ss_pred HHHHHHHCCCC-----------------------H----HHCCC--CCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCEE
T ss_conf 99998848343-----------------------2----22043--57489999999999999995232-0146354379
Q ss_pred CCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47888766798890650998898502443457899855588887631294999999997308899999999999999988
Q 000778 633 LPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGL 712 (1288)
Q Consensus 633 ~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~g~~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~I~~RldaVe~L 712 (1288)
....++|.||.+|+++|||+++.+ |+.+||||+++|+|+|+||+|+||+||++||+|++.|+.|||+|++|
T Consensus 261 --------~~~~~~m~ld~~t~~~LEl~~~~~-~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~ 331 (800)
T 1wb9_A 261 --------EREQDSIIMDAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGAL 331 (800)
T ss_dssp --------CCGGGBCEECHHHHHHTTSSSCTT-SCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHT
T ss_pred --------ECCCCEEEECHHHHHHCCCCCCCC-CCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf --------744777986689998546852478-99646599986889697999999987258899999999999999999
Q ss_pred HCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 61991369999995099998999999986253346878863022389889999999999843299999987898987200
Q 000778 713 RGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENT 792 (1288)
Q Consensus 713 ~~~n~~~~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~ 792 (1288)
.. .+..++..|++++|++|+++|+..+. . ..+++..+...|..+..+.+. +...
T Consensus 332 ~~----~~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~ 385 (800)
T 1wb9_A 332 QD----FTAGLQPVLRQVGDLERILARLALRT-A--------------RPRDLARMRHAFQQLPELRAQ-------LETV 385 (800)
T ss_dssp GG----GHHHHHHHHHTTCSHHHHHHHHHHTC-C--------------CHHHHHHHHHHHTTHHHHHHH-------HHSC
T ss_pred HH----HHHHHHHHHCCCCCHHHHHHHHHCCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHHC
T ss_conf 99----99977887527865899999997299-8--------------999999999999999999999-------8736
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHH--HCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 636687643389994149999999996412475--307995350799995479999999999999999999999881698
Q 000778 793 ESRQLHHILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDT 870 (1288)
Q Consensus 793 ~s~~l~~l~~~~~~~~~i~~~l~~~~~~~d~~~--~~~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~l~~~~~~l~~~ 870 (1288)
.++.+..+... ++.+..+.+.+..+|+... ...+|.++ ++|++++||.+|..+.++++++.+++...++.++.+
T Consensus 386 ~~~~L~~l~~~---l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~ 461 (800)
T 1wb9_A 386 DSAPVQALREK---MGEFAELRDLLERAIIDTPPVLVRDGGVI-ASGYNEELDEWRALADGATDYLERLEVRERERTGLD 461 (800)
T ss_dssp CCHHHHHHHHH---HCCCHHHHHHHHHHBCSSCCSCSTTCCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHH---CCCHHHHHHHHHHHHCCCCHHHHHCCCEE-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86899999973---60289999999998674754454138846-789788999999999999999999999999983998
Q ss_pred CCEEEEECCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72089867721443143211388898579973002708982857999999989999999999999999998999863589
Q 000778 871 SITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNK 950 (1288)
Q Consensus 871 ~i~~~~~~~~~y~iev~~~~~~~~p~~~~~~ss~k~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~ 950 (1288)
.+++...+..+|+|+|+....+.+|.+|+..++.++..||+||+++++++++.++++++..++..++.++...+..+...
T Consensus 462 ~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~ 541 (800)
T 1wb9_A 462 TLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA 541 (800)
T ss_dssp TCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHH
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14787647313999984320013885127864026887884789999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999999999989868897511599953302317999998808984079772112469998201334422788888279
Q 000778 951 WRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFI 1030 (1288)
Q Consensus 951 l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~ 1030 (1288)
|..+.+++++|||++|+|.+|... +||||+|++. +.+.++++|||+++.. . ++.+|+||++|+ ..|+++
T Consensus 542 l~~~~~~la~lD~l~s~A~~a~~~--~~~~P~~~~~-----~~i~i~~~rHP~le~~-~-~~~~vlndisl~--~~g~i~ 610 (800)
T 1wb9_A 542 LQQSASALAELDVLVNLAERAYTL--NYTCPTFIDK-----PGIRITEGRHPVVEQV-L-NEPFIANPLNLS--PQRRML 610 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCBCCEECSS-----SCEEEEEECCTTHHHH-C-SSCCCCEEEEEC--SSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEECCC-----CCEEEEECCCCEEECC-C-CCCEEEECCCCC--CCCCEE
T ss_conf 999999999999999999999868--9836477799-----8789995416378724-7-983651023126--788589
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99942899713888622348988440862246544433188998730802267620011289999999999939999499
Q 000778 1031 LLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLV 1110 (1288)
Q Consensus 1031 ~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~sLv 1110 (1288)
+||||||||||||||+++++.+|+|+|++||+..+.+++++++|++++..|++..+.|+|+.+|.+++.++..+++++||
T Consensus 611 ~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLl 690 (800)
T 1wb9_A 611 IITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLV 690 (800)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999998768999999988988751864213204542199987658878888742655568899999999845699789
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 99489999995889999999999997426948999918901366302898627856479970688785507773675289
Q 000778 1111 VLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPG 1190 (1288)
Q Consensus 1111 LlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~~~~~i~~ly~l~~G 1190 (1288)
||||||+|||+.|+.++++++++++.++.++++||+|||++++......+.|.++||...... ++++|+|++.+|
T Consensus 691 LLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~-----~~l~~~ykl~~G 765 (800)
T 1wb9_A 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHG-----DTIAFMHSVQDG 765 (800)
T ss_dssp EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEET-----TEEEEEEEEEES
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCEEEEEEEEEECC-----CCEEEEEEEEEC
T ss_conf 997998789866799999999999986239868998378899987443202377899999728-----917898799878
Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899868899999959999999999999999999
Q 000778 1191 ACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEA 1223 (1288)
Q Consensus 1191 ~~~~s~g~~vA~~aGlp~~vi~~A~~~~~~~e~ 1223 (1288)
.+++|||++||+++|+|++||++|+++..++|.
T Consensus 766 ~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 766 AASKSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp CCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999858999999819899999999999998761
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=1116.40 Aligned_cols=747 Identities=31% Similarity=0.450 Sum_probs=625.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHHCCEEEECC-----CCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 379989999999985199939999608559982101998752232454129-----998577674417589999998299
Q 000778 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPHCGFPERNFSMNVEKLARKGY 399 (1288)
Q Consensus 325 ~~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEly~~DA~i~ak~L~L~~~~g-----~~~~~GfPe~~l~~~~~~Lv~~Gy 399 (1288)
.++||||||||+||++|||+|||||||||||||++||++++++|+|++|++ ++||||||+|+++.|+++||++||
T Consensus 11 ~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~ 90 (765)
T 1ewq_A 11 GPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGF 90 (765)
T ss_dssp SCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHHCCEEECCCCCCCCCCEECCCHHHHHHHHHHHHHCCC
T ss_conf 99984999999999878997999964861577177899999970958835678899772525838899999999997798
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf 59999136995889997631188886045557888407611115666899998589999946899988899988999999
Q 000778 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479 (1288)
Q Consensus 400 KVavveQ~Et~~~~~~r~~~~~~k~kvv~Rev~~IiTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~iGia~v 479 (1288)
|||||||+|+|... .++|+|+||+|+||||++|++++ . ..++||+||+ .. ..||+||+
T Consensus 91 kVai~eQ~e~~~~~----------kg~v~R~v~~v~TpGT~~~~~~l-~-~~~n~l~ai~-~~---------~~~Gla~~ 148 (765)
T 1ewq_A 91 RLAVADQVEPAEEA----------EGLVRREVTQLLTPGTLLQESLL-P-REANYLAAIA-TG---------DGWGLAFL 148 (765)
T ss_dssp CEEEEEECSCGGGC----------SSSCCEEEEEEECGGGCCCGGGS-C-SSCCCEEEEE-ES---------SSEEEEEE
T ss_pred EEEEEECCCCCCCC----------CCCEEEEEEEEECCCEECCHHHC-C-CCCCEEEEEE-EC---------CEEEEEEE
T ss_conf 79999468885334----------67416899999757500353223-7-7786899999-58---------98999999
Q ss_pred ECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 76778199999728620567999987039628992599999478999985038873123467854567356699999997
Q 000778 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559 (1288)
Q Consensus 480 D~stge~~l~qf~Dd~~~s~L~t~L~~l~P~EIi~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 559 (1288)
|++||+|.+++|.|+ ++|.+.|.+++|+|||++.+. .. +.. .+..+...|
T Consensus 149 D~stg~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~-----~~-~~~---------------------~~~~~~~~f 198 (765)
T 1ewq_A 149 DVSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPEL-----LE-NGA---------------------FLDEFRKRF 198 (765)
T ss_dssp ETTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHH-----HH-CHH---------------------HHHHHHHHC
T ss_pred ECCCCEEEEEEECCH---HHHHHHHHHCCCEEEEECCCH-----HH-HHH---------------------HHHHCCCCC
T ss_conf 987777999983588---999999972698099966873-----77-777---------------------765150006
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCCC
Q ss_conf 21012221222422224345689986651134643105998058999999999999996141001012340004788876
Q 000778 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639 (1288)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~ 639 (1288)
.. ... . ..++.. . ..+ ..+++|+|+++.||+.+.... +. ...+..
T Consensus 199 ~~-~~l---------~----~~~~~~-------~----~~~-~~~~~a~g~ll~Yl~~~~~~~-~~-~~~~~~------- 243 (765)
T 1ewq_A 199 PV-MLS---------E----APFEPE-------G----EGP-LALRRARGALLAYAQRTQGGA-LS-LQPFRF------- 243 (765)
T ss_dssp CS-EEE---------C----CCCCCC-------S----SSC-HHHHHHHHHHHHHHHHHHTSC-CC-CCCCEE-------
T ss_pred CH-HHH---------H----HHHCCC-------C----CCC-HHHHHHHHHHHHHHHHHHHCC-CC-CCCCEE-------
T ss_conf 88-999---------9----884604-------4----587-799999999999999960221-25-578689-------
Q ss_pred CCCCCCCEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 67988906509988985024434578998555888876312949999999973088999999999999999886199136
Q 000778 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPF 719 (1288)
Q Consensus 640 ~~~~~~~M~LD~~Tl~~LEI~~n~~~g~~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~I~~RldaVe~L~~~n~~~ 719 (1288)
....++|.||.+|+++|||++|.+ | +||||+++|+|+|+||+|+||+||++|++|++.|++|||+|++|.. +...
T Consensus 244 -~~~~~~m~lD~~t~~~LEl~~~~~-~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~-~~~~ 318 (765)
T 1ewq_A 244 -YDPGAFMRLPEATLRALEVFEPLR-G--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGAL 318 (765)
T ss_dssp -CCGGGSCBCCHHHHHHTTSSSCSS-S--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-CHHH
T ss_pred -ECCCCEEEECHHHHHHCCCCCCCC-C--CCHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-CHHH
T ss_conf -777886996689997375854789-6--1169998688879799999999765747899999999999999973-9899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999950999989999999862533468788630223898899999999998432999999878989872006366876
Q 000778 720 ALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799 (1288)
Q Consensus 720 ~~~lr~~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~ 799 (1288)
+..++..|++++|++|++.|+..+. . ..+++..+...|..+..+.. .+.
T Consensus 319 ~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~--------- 367 (765)
T 1ewq_A 319 REGVRRLLYRLADLERLATRLELGR-A--------------SPKDLGALRRSLQILPELRA-------LLG--------- 367 (765)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHC---------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHH---------
T ss_conf 9988998735778899999997289-9--------------88999999999999999999-------998---------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCHHH--HCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 43389994149999999996412475--3079953507999954799999999999999999999998816987208986
Q 000778 800 ILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI 877 (1288)
Q Consensus 800 l~~~~~~~~~i~~~l~~~~~~~d~~~--~~~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~l~~~~~~l~~~~i~~~~~ 877 (1288)
+ ...++.+..+.+.+..+++... ...++.++ ++|++++||.++..+.+.++++.++...++..++.+.++....
T Consensus 368 l---~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i-~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~ 443 (765)
T 1ewq_A 368 E---EVGLPDLSPLKEELEAALVEDPPLKVSEGGLI-REGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443 (765)
T ss_dssp T---TSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred H---HHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 7---75165379999999998634643442047753-7887899999999999999999999999999729995589862
Q ss_pred CCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77214431432113888985799730027089828579999999899999999999999999989998635899999999
Q 000778 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957 (1288)
Q Consensus 878 ~~~~y~iev~~~~~~~~p~~~~~~ss~k~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ 957 (1288)
+..+|+++|+....+.+|++|+..++.++..||+||+++++++++.++++++..++..++.++...+..+...|..+..+
T Consensus 444 ~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~ 523 (765)
T 1ewq_A 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARI 523 (765)
T ss_dssp TTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCEEEEEEEEHHHHHCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64159999646765039863599872268757877899999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999898688975115999533023179999988089840797721124699982013344227888882799994289
Q 000778 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNM 1037 (1288)
Q Consensus 958 ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNg 1037 (1288)
+++|||++|+|.++... +||||+| . ..+.++++|||+++. .+.+|+||++|+ |++++||||||
T Consensus 524 la~LD~l~s~a~~a~~~--~~~~P~~-~------~~i~i~~~rHP~le~----~~~~vl~disl~----g~i~~I~GpNG 586 (765)
T 1ewq_A 524 LAELDVYAALAEVAVRY--GYVRPRF-G------DRLQIRAGRHPVVER----RTEFVPNDLEMA----HELVLITGPNM 586 (765)
T ss_dssp HHHHHHHHHHHHHHHHH--TCBCCEE-S------SSEEEEEECCTTGGG----TSCCCCEEEEES----SCEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHHC--CCEEECC-C------CCEEEEEEECCEECC----CCCEEEEECCCC----CCEEEEECCCC
T ss_conf 99999999549999867--9334135-7------738999727863706----884575110577----86899999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 97138886223489884408622465444331889987308022676200112899999999999399994999948999
Q 000778 1038 GGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGR 1117 (1288)
Q Consensus 1038 sGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il~~a~~~sLvLlDE~gr 1117 (1288)
||||||||+++++.+|+|+|+++|+..+.+++++++|+++++.|++..+.|+|+.+|.+++.++..+++++|+|||||||
T Consensus 587 sGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 587 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 87689999998656531168553044051343777653197899987423677899999999998566897899988998
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCHH
Q ss_conf 99958899999999999974269489999189013663028986278564799706887855077736752898998688
Q 000778 1118 GTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEVTFLYRLSPGACPKSYG 1197 (1288)
Q Consensus 1118 GTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~~~~~i~~ly~l~~G~~~~s~g 1197 (1288)
||+++|+.+++++++++|.+ .++++||+||+++++... .+.+.++||..... .++++|+|++.+|.+++|||
T Consensus 667 GTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~-----~~~l~f~ykl~~G~~~~Syg 738 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG--LPRLKNLHVAAREE-----AGGLVFYHQVLPGPASKSYG 738 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC--CTTEEEEEEEEECC-----SSSCEEEEEEEESCCSSCCH
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH--HHCCEEEEEEEEEC-----CCEEEEEEEEEECCCCCCHH
T ss_conf 88876899999999999996-899899992788999765--41605899999970-----89078987897789999669
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999959999999999999999999
Q 000778 1198 VNVARLAGIPDKVLQKAVAKSTEFEA 1223 (1288)
Q Consensus 1198 ~~vA~~aGlp~~vi~~A~~~~~~~e~ 1223 (1288)
++||+++|+|++||++|+++..++|+
T Consensus 739 i~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 739 VEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999829899999999999998741
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=1114.78 Aligned_cols=875 Identities=25% Similarity=0.343 Sum_probs=683.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHHCCE-----EEECC----CCCCCCCCCCCHHHHHHH-H
Q ss_conf 3799899999999851999399996085599821019987522324-----54129----998577674417589999-9
Q 000778 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-----QYMKG----EQPHCGFPERNFSMNVEK-L 394 (1288)
Q Consensus 325 ~~~TP~~kQyw~iK~~~~D~IlfFk~GkFYEly~~DA~i~ak~L~L-----~~~~g----~~~~~GfPe~~l~~~~~~-L 394 (1288)
.+.|||++|||++|++|+|||+||++|+|||+|++||+++|++|++ +++++ ++|+++||.++|+.|+++ |
T Consensus 14 ~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~L 93 (934)
T 3thx_A 14 AAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLL 93 (934)
T ss_dssp HHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 12447999998666469996999973874456364699999997130056540477877787756407999999999999
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEECC-CCCCCCC---CCEEEEEEECCCCCCCCCC
Q ss_conf 98299599991369958899976311888860455578884076111156-6689999---8589999946899988899
Q 000778 395 ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE-LLSANPD---ASYLMALTESNQSPASQST 470 (1288)
Q Consensus 395 v~~GyKVavveQ~Et~~~~~~r~~~~~~k~kvv~Rev~~IiTpGTl~d~~-~l~~~~~---~~yllaI~e~~~~~~~~~~ 470 (1288)
+++||||+||+|.+++. ..+.++|+|++++||||+++.+ +|..+.+ ++||+||++... +.
T Consensus 94 l~~g~rVei~~q~~~~~-----------~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~-----~~ 157 (934)
T 3thx_A 94 LVRQYRVEVYKNRAGNK-----------ASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAV-----DG 157 (934)
T ss_dssp HTTCCEEEEEEECC---------------CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCS-----SS
T ss_pred HHCCCEEEEEECCCCCC-----------CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEC-----CC
T ss_conf 97697799982578643-----------467651589998889708888887514654333642799999505-----88
Q ss_pred CCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98899999976778199999728620567999987039628992599999478999985038873123467854567356
Q 000778 471 DRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAET 550 (1288)
Q Consensus 471 ~~~iGia~vD~stge~~l~qf~Dd~~~s~L~t~L~~l~P~EIi~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~ 550 (1288)
...||+||+|++||+|.+++|.|+..|++|.+.|.+++|+|||+|....+....++..............+... |+...
T Consensus 158 ~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-f~~~~ 236 (934)
T 3thx_A 158 QRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKAD-FSTKD 236 (934)
T ss_dssp SCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHHHTCEEEEECGGG-GCCSS
T ss_pred CCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCHHH-CCHHH
T ss_conf 86799999998887699996577258999999998679859996078775107899999860684478566242-68778
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC
Q ss_conf 69999999721012221222422224345689986651134643105998058999999999999996141001012340
Q 000778 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKF 630 (1288)
Q Consensus 551 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f 630 (1288)
..+.+.+++....... .....++.. +.+++++|+|+++.||+...... . +..+
T Consensus 237 ~~~~l~~~~~~~~~~~---------------~~~~~~~~~---------~~~~~~~a~gall~Yl~~~~~~~-~--~~~~ 289 (934)
T 3thx_A 237 IYQDLNRLLKGKKGEQ---------------MNSAVLPEM---------ENQVAVSSLSAVIKFLELLSDDS-N--FGQF 289 (934)
T ss_dssp HHHHHHHHBCCCTTSC---------------CCGGGCGGG---------GCHHHHHHHHHHHHHHTGGGCGG-G--TTCB
T ss_pred HHHHHHHHHCCCCCCC---------------CCCCCCCCC---------CCHHHHHHHHHHHHHHHHHCCCC-C--CCCC
T ss_conf 9999999854245444---------------443444433---------42899999999999999966754-3--3546
Q ss_pred EECCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 0047888766798890650998898502443457899-855588887631294999999997308899999999999999
Q 000778 631 ELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD-SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAV 709 (1288)
Q Consensus 631 ~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~n~~~g~-~~gSLf~lLn~t~T~~GkRLLr~wl~~PL~d~~~I~~RldaV 709 (1288)
.+ ......++|.||++|++||||++|.++++ .+||||++||+|+|+||+||||+||++||+|++.|++|||+|
T Consensus 290 ~~------~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~V 363 (934)
T 3thx_A 290 EL------TTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLV 363 (934)
T ss_dssp EE------EECCGGGBCEECHHHHHHTTSCC---------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHH
T ss_pred CC------EEECCCCEEEECHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 53------577678859857888963612645799987777499986457787999999999748688999999999999
Q ss_pred HHHHCCCCHHHHHHHH-HCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9886199136999999-509999899999998625334687886302238988999999999984329999998789898
Q 000778 710 AGLRGVNQPFALEFRK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAI 788 (1288)
Q Consensus 710 e~L~~~n~~~~~~lr~-~Lk~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~ 788 (1288)
++|.. +..++..++. .|+++||+||+++|+..+.. ..+++..+..+|..+..+.+.+.. .
T Consensus 364 e~l~~-~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~---------------~~~dl~~l~~~l~~~~~l~~~l~~---~ 424 (934)
T 3thx_A 364 EAFVE-DAELRQTLQEDLLRRFPDLNRLAKKFQRQAA---------------NLQDCYRLYQGINQLPNVIQALEK---H 424 (934)
T ss_dssp HHHHS-CHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC---------------CHHHHHHHHHHHTTHHHHHHHHHH---T
T ss_pred HHHHH-CHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC---------------CHHHHHHHHHHHHHHHHHHHHHHH---C
T ss_conf 99850-9589999999986478789999999962899---------------999999999999999999999985---5
Q ss_pred HHHCCHHHHHHH-HCC-CCCCHHHHHHHHHHHHHHCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 720063668764-338-999414999999999641247530799535079999547999999999999999999999988
Q 000778 789 LENTESRQLHHI-LTP-GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKL 866 (1288)
Q Consensus 789 l~~~~s~~l~~l-~~~-~~~~~~i~~~l~~~~~~~d~~~~~~~g~i~~~~g~d~eld~~~~~~~~~~~~L~~~l~~~~~~ 866 (1288)
....+..+..+ +.. ...+..+..+.+.+..+||.... ++|..++++|+|++||.++..+.+++++|.+++.++++.
T Consensus 425 -~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~-~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~ 502 (934)
T 3thx_A 425 -EGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQV-ENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARD 502 (934)
T ss_dssp -CCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGG-GTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -331106789888889998876599999999998572314-249951389989999999999999999999999999998
Q ss_pred HCC---CCCEEEEECCCEEEEECCCCCCCC--CCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 169---872089867721443143211388--898579973002708982857999999989999999999999999998
Q 000778 867 LGD---TSITYVTIGKDLYLLEVPESLRGS--VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLI 941 (1288)
Q Consensus 867 l~~---~~i~~~~~~~~~y~iev~~~~~~~--~p~~~~~~ss~k~~~ry~t~~l~~l~~~l~~~~~~~~~~~~~il~~l~ 941 (1288)
++. .++++......+|+++|+...... .|.+|+..++.++..||+||+++++++++.++++++...+..++.++.
T Consensus 503 ~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~ 582 (934)
T 3thx_A 503 LGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIV 582 (934)
T ss_dssp SCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HCCCCCCEEEEEEECCCEEEEEEEECHHHCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48985652799981640289999842654457887818997135739998989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986358999999999999989868897511599953302317999998808984079772112469998201334422
Q 000778 942 GQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITI 1021 (1288)
Q Consensus 942 ~~~~~~~~~l~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l 1021 (1288)
..+..+...|..+.+++++|||++|||.+|.....+||||+|.+.+ ...|.++++|||+++.. .+..|||||++|
T Consensus 583 ~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~---~~~i~i~~~rHP~le~~--~~~~~v~ndisl 657 (934)
T 3thx_A 583 NISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKG---QGRIILKASRHACVEVQ--DEIAFIPNDVYF 657 (934)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTT---SCEEEEEEECCTTTTTC----CCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC---CCCEEEECCCCCHHHHC--CCCEEECCCCEE
T ss_conf 9999999999999999999999999999998566898487000278---75407636756124433--786065345333
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 78888827999942899713888622348988440862246544433188998730802267620011289999999999
Q 000778 1022 GGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101 (1288)
Q Consensus 1022 ~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ilaq~G~~VPa~~~~~~~~d~i~~rig~~d~i~~~~Stf~~em~e~~~il 1101 (1288)
+. ..|++++||||||||||||||+++++++|+|+|+|||+..+.+++++++|+++|..|++..+.|+|+++|.+++.|+
T Consensus 658 ~~-~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il 736 (934)
T 3thx_A 658 EK-DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASIL 736 (934)
T ss_dssp ET-TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHH
T ss_pred EC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03-79718999888998777999999998998762884344233004999999863816538775766679999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCCCCCCEE
Q ss_conf 93999949999489999995889999999999997426948999918901366302898627856479970688785507
Q 000778 1102 SSATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGVGGVEEV 1181 (1288)
Q Consensus 1102 ~~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~~~~~~i 1181 (1288)
..+++++||||||||+|||+.+|.++++++++++.++.++++||+|||++++......+.+.++|+..... .+++
T Consensus 737 ~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~-----~~~l 811 (934)
T 3thx_A 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT-----EETL 811 (934)
T ss_dssp HHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEE-----TTEE
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEEEEC-----CCCE
T ss_conf 84639919999699889999999999999999998567999999927379998732040007669999844-----8827
Q ss_pred EEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-CC-C-CCC-CCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 773675289899868899999959999999999999999999861100-00-1-246-654-111568999999999998
Q 000778 1182 TFLYRLSPGACPKSYGVNVARLAGIPDKVLQKAVAKSTEFEAIYGKHK-KE-S-EEN-LPA-DHCVDHMVVLIQSLLNFT 1256 (1288)
Q Consensus 1182 ~~ly~l~~G~~~~s~g~~vA~~aGlp~~vi~~A~~~~~~~e~~~~~~~-~~-~-~~~-~~~-~~~~~~~~~~~~~~~~~~ 1256 (1288)
.|+|++.+|.+++|||++||+++|+|.+||++|++++.++|....... .. . ... ... ....++.+..++++.+.+
T Consensus 812 ~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (934)
T 3thx_A 812 TMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKV 891 (934)
T ss_dssp EEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTTC---------------CCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 78888866888986499999983989999999999999997124545543333333200001000123525789999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4022122486310468999999999
Q 000778 1257 ANLSCQKSSEGDGVTCLTELQRQAG 1281 (1288)
Q Consensus 1257 ~~~~~~~~~~~~~~~~l~~l~~~~~ 1281 (1288)
..+.-..+.+.+.+++|.+|+.+.+
T Consensus 892 ~~l~~~~~tp~eal~~l~~l~~~~~ 916 (934)
T 3thx_A 892 KQMPFTEMSEENITIKLKQLKAEVI 916 (934)
T ss_dssp HTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7378133999999999999999987
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=150.88 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=119.4
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH------------------
Q ss_conf 08984079772112469998201334422788888279999428997138886223489884------------------
Q 000778 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------ 1054 (1288)
Q Consensus 993 ~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ila------------------ 1054 (1288)
.|++++...-+ ++..+.+|++|.+ ..|++++|+||||||||||||+|+++.-..
T Consensus 4 ~l~i~~ls~~y-------~~~~~L~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-------QNTPVLNDISLSL-DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-------TTEEEEEEEEEEE-CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBC
T ss_pred EEEEEEEEEEE-------CCEEEEEEEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCC
T ss_conf 89999699998-------9988897538999-599899999999805999999996699899738999999975455665
Q ss_pred ----HCCCCCCCCCC---CCCHHHHH---------------------HHHCCCHHHHHHCCCCHH-HHHHHHHHHHHHCC
Q ss_conf ----40862246544---43318899---------------------873080226762001128-99999999999399
Q 000778 1055 ----QVGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSAT 1105 (1288)
Q Consensus 1055 ----q~G~~VPa~~~---~~~~~d~i---------------------~~rig~~d~i~~~~Stf~-~em~e~~~il~~a~ 1105 (1288)
..-.||+...+ .+.+.+.+ +..++..+......+.++ ++.++++.+..++.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 54108889990787578999999999999987699868999999999988699037558924579999999999999973
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 9949999489999995889999999999997426948999918901366302898627856479970688
Q 000778 1106 RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1106 ~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
+|.++|||||..|.|+.....+...+.+ +.++.+.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~-~~~~~g~tvi~vTHd~~ea~~~aD--ri~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIA-ALRANGKSAVFVSHDREEALQYAD--RIAVMKQGRILQTAS 222 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH-HHHHTTCEEEEECCCHHHHHHHCS--EEEEEETTEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH-HHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEEC
T ss_conf 9999999697436799999999999999-998579989999499999998799--999998998999818
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=150.25 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=118.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH------------------H
Q ss_conf 8984079772112469998201334422788888279999428997138886223489884------------------4
Q 000778 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA------------------Q 1055 (1288)
Q Consensus 994 i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~ila------------------q 1055 (1288)
|++++...-+ ++..+.+|++|.+ ..|++++|+||||||||||||+|+++.-.. .
T Consensus 4 l~~~~l~~~y-------g~~~~L~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r 75 (381)
T 3rlf_A 4 VQLQNVTKAW-------GEVVVSKDINLDI-HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAER 75 (381)
T ss_dssp EEEEEEEEEE-------TTEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred EEEEEEEEEE-------CCEEEEEEEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHC
T ss_conf 9998489998-------9999996568998-7998999996899559999999976998897199999999987997788
Q ss_pred CCCCCCCCCC---CCCHHHHH---------------------HHHCCCHHHHHHCCCCHH-HHHHHHHHHHHHCCCCCEE
Q ss_conf 0862246544---43318899---------------------873080226762001128-9999999999939999499
Q 000778 1056 VGADVPAEIF---EISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLV 1110 (1288)
Q Consensus 1056 ~G~~VPa~~~---~~~~~d~i---------------------~~rig~~d~i~~~~Stf~-~em~e~~~il~~a~~~sLv 1110 (1288)
.-.+|++..+ .+.+.+.| +..++..+......+.++ ++.++++.+..++.+|.++
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 88999068757899999999999997759998999999999998859941653992579999999999999998199999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 99489999995889999999999997426948999918901366302898627856479970688
Q 000778 1111 VLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1111 LlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
|||||..|.|+.....+. ..+..+.++.+.++|++||+.+.+..+++ +|.+++.|.++..|+
T Consensus 156 LLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~~aD--ri~vl~~G~i~~~g~ 217 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLAD--KIVVLDAGRVAQVGK 217 (381)
T ss_dssp EEESTTTTSCHHHHHHHH-HHHHHHHHHHCCEEEEECSCHHHHHHHCS--EEEEEETTEEEEEEC
T ss_pred EEECCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEEC
T ss_conf 998987679999999999-99999998679889999889999998699--999998998999838
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=150.17 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=125.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-----------------
Q ss_conf 880898407977211246999820133442278888827999942899713888622348988-----------------
Q 000778 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------- 1053 (1288)
Q Consensus 991 ~~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~il----------------- 1053 (1288)
.+.|++++...-+-.. .....+.+|++|.+ ..|++++|+||||||||||+|+|+++.-.
T Consensus 22 ~~mi~v~~ls~~y~~~---~~~~~aL~~vsl~i-~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG---TRTIQALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp -CCEEEEEEEEEEECS---SSEEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred CCEEEEEEEEEEECCC---CCCEEEEEEEEEEE-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCH
T ss_conf 8659998489993898---87737887469998-4898999995899559999999966999996299999999875898
Q ss_pred ------HHCCCCCCCCCC---CCCHHHH---------------------HHHHCCCHHHHHHCCCCHHHH-HHHHHHHHH
Q ss_conf ------440862246544---4331889---------------------987308022676200112899-999999999
Q 000778 1054 ------AQVGADVPAEIF---EISPVDR---------------------IFVRMGAKDHIMAGQSTFLTE-LSETALMLS 1102 (1288)
Q Consensus 1054 ------aq~G~~VPa~~~---~~~~~d~---------------------i~~rig~~d~i~~~~Stf~~e-m~e~~~il~ 1102 (1288)
.+.-.|||.... .+.+.+. ++..+|..+......+.+++. .++++.+..
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHH
T ss_conf 79998738689992787568888999999999986599878999999999997699347619945589999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECCC
Q ss_conf 3999949999489999995889999999999997426948999918901366302898627856479970688
Q 000778 1103 SATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNGV 1175 (1288)
Q Consensus 1103 ~a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~~ 1175 (1288)
++.+|.++|+|||+.|.|+.....+. .++..+.++.+.++|++||+.+.+..+++ +|..++.|.++..|+
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l~~~~g~Tii~vTHdl~~~~~~aD--rv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICD--CVAVISNGELIEQDT 247 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHSCCEEEEEESCHHHHHHHCS--EEEEEETTEEEECCB
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEECC
T ss_conf 96699999997987568999999999-99999997379999999568999999699--999998998999758
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=1.00 E-value=1 Score=148.05 Aligned_cols=172 Identities=21% Similarity=0.191 Sum_probs=118.8
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-------------------
Q ss_conf 8089840797721124699982013344227888882799994289971388862234898-------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------- 1052 (1288)
Q Consensus 992 ~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~i------------------- 1052 (1288)
+.|++++..... ++..+.++++|.+ ..|++++|+||||||||||+|.++++.-
T Consensus 10 ~~l~~~~l~~~~-------~~~~vL~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-------QQQALINDVSLHI-ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-------TTEEEEEEEEEEE-ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHH
T ss_pred CEEEEEEEEEEE-------CCEEEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH
T ss_conf 669998699995-------9956787658998-69989999999998599999999669988873899999997759989
Q ss_pred -HHHCCCCCCCCC---CCCCHHHH-------------------HHHHCCCHHHHHHCCCCHHH-HHHHHHHHHHHCC---
Q ss_conf -844086224654---44331889-------------------98730802267620011289-9999999999399---
Q 000778 1053 -LAQVGADVPAEI---FEISPVDR-------------------IFVRMGAKDHIMAGQSTFLT-ELSETALMLSSAT--- 1105 (1288)
Q Consensus 1053 -laq~G~~VPa~~---~~~~~~d~-------------------i~~rig~~d~i~~~~Stf~~-em~e~~~il~~a~--- 1105 (1288)
+++...|++... ..+.+.+. ++.+++..+......+++++ +.++++.+..++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98530899923775678979999998554206857799999999987598557559924078999999999999966445
Q ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECC
Q ss_conf ---994999948999999588999999999999742694899991890136630289862785647997068
Q 000778 1106 ---RNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1106 ---~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~ 1174 (1288)
+|.++|+|||+.|.|+.....+. .++..+.++.++++|++||+.+++..+++ +|..++.|.++..+
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~~~~~~tvi~vtHdl~~~~~~~d--~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLTRQEPLAVCCVLHDLNLAALYAD--RIMLLAQGKLVACG 230 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHHHHSSEEEEEECSCHHHHHHHCS--EEEEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEC
T ss_conf 68899999983964469999999999-99999997389899999769899998689--99999899899986
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=1.00 E-value=1 Score=147.28 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=118.4
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-------------------
Q ss_conf 8089840797721124699982013344227888882799994289971388862234898-------------------
Q 000778 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------- 1052 (1288)
Q Consensus 992 ~~i~i~~~rHP~le~~~~~~~~~v~ndi~l~~~~~~~~~~ItGpNgsGKSTlLk~i~~i~i------------------- 1052 (1288)
+.|++++...-+ .....+.++++|.+ .+|++++|+||||||||||+|+|+++.-
T Consensus 6 ~~l~i~~ls~~y------~~~~~~L~~isl~i-~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 6 YILKVEELNYNY------SDGTHALKGINMNI-KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEEEC------TTSCEEEEEEEEEE-ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHH
T ss_pred CEEEEEEEEEEE------CCCCEEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCCC
T ss_conf 379998789997------99886787407999-18989999999998799999999769989974999999988765320
Q ss_pred ---HHHCCCCCCCCC----CCCCHHHHH---------------------HHHCCCHHHHHHCCCCHH-HHHHHHHHHHHH
Q ss_conf ---844086224654----443318899---------------------873080226762001128-999999999993
Q 000778 1053 ---LAQVGADVPAEI----FEISPVDRI---------------------FVRMGAKDHIMAGQSTFL-TELSETALMLSS 1103 (1288)
Q Consensus 1053 ---laq~G~~VPa~~----~~~~~~d~i---------------------~~rig~~d~i~~~~Stf~-~em~e~~~il~~ 1103 (1288)
+.+.-.|||... ....+.+.+ +.++|..+......++++ ++.++++.+..+
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89982757999717531025481999999899876999899999999999975990455389010999999999999999
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEEEEEEECC
Q ss_conf 99994999948999999588999999999999742694899991890136630289862785647997068
Q 000778 1104 ATRNSLVVLDELGRGTSTSDGQAIAESVLEHFVHKVQCRGLFSTHYHRLAVDYKKDPRVSLCHMACQVGNG 1174 (1288)
Q Consensus 1104 a~~~sLvLlDE~grGTs~~Dg~aia~aile~L~~~~~~~~l~~TH~~~l~~~~~~~~~v~~~~~~~~v~~~ 1174 (1288)
+.+|.++|||||+.|.|+.....+. .++..+.++.+.++|++||+.+++..+++ +|..++.|.++..|
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~-~~l~~l~~~~g~tvi~vtHdl~~~~~~~d--rv~~l~~G~i~~~g 226 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIM-KLLVEMQKELGITIIIATHDIDIVPLYCD--NVFVMKEGRVILQG 226 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHCCEEEEEESCCSSGGGGCS--EEEEEETTEEEEEE
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCC--EEEEEECCEEEEEC
T ss_conf 7499999998961148999999999-99999986379999999469999999699--99999899999977
Done!