BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000780
(1288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 4 SSSSSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAI 63
SS ++ Y+VFL+FRG DTR +F LY L R+ IRTF DD+ L G SP L + I
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELV-RRSIRTFKDDKELENGQRFSPELKSPI 60
Query: 64 QGSKISVVIFSKDYASSKWCLHELLKILECKKMKGQIIIPVFYGVSPSDVRHQNGTFGDG 123
+ S+ +VV+ S++YA+S WCL EL+ I++ +K ++P+FYGV P+ VR Q G +
Sbjct: 61 EVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120
Query: 124 FDELKKQFQDKPEMVLKWRDALTETSHLAGHESAKFRHDAQLVNKIVEDVLKK 176
F K ++ PE VLKWR ALT + L+G S D++LV+KI ++ K
Sbjct: 121 FK--KHASREDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 3 SSSSSSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNA 62
S S S YEVFL+FRG DTR FT LY +L R KI TF DD+ L +G EI P LL A
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSL-RRYKIHTFRDDDELLKGKEIGPNLLRA 86
Query: 63 IQGSKISVVIFSKDYASSKWCLHELLKILECKKMK-GQIIIPVFYGVSPSDVRHQNGTFG 121
I SKI V I S YA SKWCL EL +I+ ++ +II+P+FY V PSDVRHQ G +
Sbjct: 87 IDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYK 146
Query: 122 DGFDELKKQFQDKPEMVLKWRDALTETSHLAGHESAKFRHDAQLVNKIVEDVLKKLEK 179
F + +F + + W+DAL + L G K + +K+ D+ + K
Sbjct: 147 KAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 146/343 (42%), Gaps = 54/343 (15%)
Query: 215 VGIWGMGGIGKTTLA-KAIFDQFSHEFEGSCFVSDVR----GNSETAGGLEHLQKQMLST 269
V I+GM G GK+ LA +A+ D H CF V G + +G L LQ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRD---HSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 206
Query: 270 TLSEKLEVAGPNIPHFTKERVRRMKL------LIVLDDVNEVGQLKRLIGELDQFGQGSR 323
E P K+R+R + L L++LDDV + LK F +
Sbjct: 207 DQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK-------AFDNQCQ 259
Query: 324 IVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSY 383
I++TTRDK V + G + + +GL E+ E F N EDL + S++
Sbjct: 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKE 316
Query: 384 TKGNPLVLEVLGSSLCLKRKSHWGKVLHDLN-----RICESEIHD---IYDILKISFNKL 435
KG+PLV+ ++G +L + W L L RI +S +D + + + IS L
Sbjct: 317 CKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 436 TPRVKSIFLDIACFFEGEDKDF-----VASILDDSES----DVLDILIDKSLVSISGNFL 486
+K + D++ KD V +L D E+ D+L ++KSL+ + N
Sbjct: 376 REDIKDYYTDLSIL----QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGK 431
Query: 487 N----MHDI----LQEMGRQIVRQESEKEPGKRSRLWDPKEIS 521
+ +HD+ L E R ++ K + R + P +S
Sbjct: 432 SFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLS 474
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 145/343 (42%), Gaps = 54/343 (15%)
Query: 215 VGIWGMGGIGKTTLA-KAIFDQFSHEFEGSCFVSDVR----GNSETAGGLEHLQKQMLST 269
V I+GM G GK+ LA +A+ D H CF V G + +G L LQ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRD---HSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 213
Query: 270 TLSEKLEVAGPNIPHFTKERVRRMKL------LIVLDDVNEVGQLKRLIGELDQFGQGSR 323
E P K+R+R + L L++LDDV + LK F +
Sbjct: 214 DQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK-------AFDNQCQ 266
Query: 324 IVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSY 383
I++TT DK V + G + + +GL E+ E F N EDL + S++
Sbjct: 267 ILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKE 323
Query: 384 TKGNPLVLEVLGSSLCLKRKSHWGKVLHDLN-----RICESEIHD---IYDILKISFNKL 435
KG+PLV+ ++G +L + W L L RI +S +D + + + IS L
Sbjct: 324 CKGSPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 382
Query: 436 TPRVKSIFLDIACFFEGEDKDF-----VASILDDSES----DVLDILIDKSLVSISGNFL 486
+K + D++ KD V +L D E+ D+L ++KSL+ + N
Sbjct: 383 REDIKDYYTDLSIL----QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGK 438
Query: 487 N----MHDI----LQEMGRQIVRQESEKEPGKRSRLWDPKEIS 521
+ +HD+ L E R ++ K + R + P +S
Sbjct: 439 SFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLS 481
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 891 LYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVL 949
L L+ N SLP + Q++ L N L SLPELP L+YL D + L +LP L
Sbjct: 64 LQLNRLNLSSLPDNLPPQITVLEITQ----NALISLPELPASLEYLDACDNR-LSTLPEL 118
Query: 950 PFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMXXXXXXXXXXXXXXTVRNCNRLQSL 1009
P L+ LD+ N L LPELP L+Y+N D N +VRN N+L L
Sbjct: 119 PASLKHLDVDN-NQLTXLPELPALLEYINA-DNNQLTXLPELPTSLEVLSVRN-NQLTFL 175
Query: 1010 PEILLCLQELDASV 1023
PE+ L+ LD S
Sbjct: 176 PELPESLEALDVST 189
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 123/293 (41%), Gaps = 46/293 (15%)
Query: 215 VGIWGMGGIGKTTLA-KAIFDQFSHEFEGSCFVSDVR----GNSETAGGLEHLQKQMLST 269
V I GM G GK+ LA +A+ D H CF V G + +G L LQ
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRD---HSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 206
Query: 270 TLSEKLEVAGPNIPHFTKERVRRMKL------LIVLDDVNEVGQLKRLIGELDQFGQGSR 323
E P K+R+R + L L++LDDV + LK F +
Sbjct: 207 DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-------AFDSQCQ 259
Query: 324 IVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSY 383
I++TTRDK V + G + + + L E+ E F N DL + S++
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKE 316
Query: 384 TKGNPLVLEVLGSSLCLKRKSHWGKVLHDLN-----RICESEIHD---IYDILKISFNKL 435
KG+PLV+ ++G +L + W L L RI +S +D + + + IS L
Sbjct: 317 CKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 436 TPRVKSIFLDIACFFEGEDKDF-----VASILDDSES----DVLDILIDKSLV 479
+K + D++ KD V IL D E+ D+L ++KSL+
Sbjct: 376 REDIKDYYTDLSIL----QKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 424
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 38/228 (16%)
Query: 757 LEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGXXXX 816
L FP+ ++ HL+ D + ELP + + GLE L + + L LP +I
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASI----- 146
Query: 817 XXXXXXXXXXXXXXXXXVALSNMLRSLDSSHCKGLESFPRTFL--------LGLSAMGLL 868
A N LR L C L P GL + L
Sbjct: 147 ------------------ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 869 HISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPEL 928
+ +R +P IA L +L+ L + + +L I + +L + L L++ P +
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 929 ---PLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRSLPEL 970
LK L L DC L +LP+ LE LDL GC L LP L
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 13/169 (7%)
Query: 645 VPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYL 704
+P+SI + L LS + C L P L + VNL L L
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLAST-DASGEHQGLVNL----------QSLRL 190
Query: 705 GQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 764
+ I +P+SI L +L+ L +R L + + L L L L GC L ++P I
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 765 EKMEHLKR-IYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 812
LKR I D + + LP L LE L + C L LP I
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 689 LIEFP----QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKL- 743
L E P Q +G T L L ++ + +P+SI L L L +R C L +
Sbjct: 116 LXELPDTXQQFAGLET-LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 744 -----RSLVTL--ILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVL 796
+ LV L + L + P + +++LK + +P++ L + +LP LE L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Query: 797 FVEDCSKLDNLPDNIG 812
+ C+ L N P G
Sbjct: 235 DLRGCTALRNYPPIFG 250
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 123/293 (41%), Gaps = 46/293 (15%)
Query: 215 VGIWGMGGIGKTTLA-KAIFDQFSHEFEGSCFVSDVR----GNSETAGGLEHLQKQMLST 269
V I GM G GK+ LA +A+ D H CF V G + +G L LQ
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRD---HSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 212
Query: 270 TLSEKLEVAGPNIPHFTKERVRRMKL------LIVLDDVNEVGQLKRLIGELDQFGQGSR 323
E P K+R+R + L L++LDDV + LK F +
Sbjct: 213 DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-------AFDSQCQ 265
Query: 324 IVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSY 383
I++TTRDK V + G + + + L E+ E F N DL + S++
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKE 322
Query: 384 TKGNPLVLEVLGSSLCLKRKSHWGKVLHDLN-----RICESEIHD---IYDILKISFNKL 435
KG+PLV+ ++G +L + W L L RI +S +D + + + IS L
Sbjct: 323 CKGSPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 381
Query: 436 TPRVKSIFLDIACFFEGEDKDF-----VASILDDSES----DVLDILIDKSLV 479
+K + D++ KD V IL D E+ D+L ++KSL+
Sbjct: 382 REDIKDYYTDLSIL----QKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 430
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 151/368 (41%), Gaps = 94/368 (25%)
Query: 662 GCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQS---AIEEVPSSIEC 718
G SL P +L + + C +L E P++ + L + + A+ ++P +E
Sbjct: 82 GLSSLPELPPHLESLV------ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 719 L----TDLEVL-DLRGCKRLKRISTSFCKLRSLVTL------ILLGCLNLEHFPEILEKM 767
L LE L +L+ LK I L+ L L I G LE PE L+ +
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNL 194
Query: 768 EHLKRIYSDRTPITELPSSFENLP-GLEVL-----FVEDCSKLDNLPDNIGXXXXXXXXX 821
L IY+D + +LP +LP LE + +E+ +L NLP
Sbjct: 195 PFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEELPELQNLP------------- 237
Query: 822 XXXXXXXXXXXXVALSNMLRSLDS------------SHCKGLESFPRTFLLGLSAMGLLH 869
A +N+L++L ++ L P++ + L
Sbjct: 238 -------FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS-------LTFLD 283
Query: 870 ISD---YAVREIPQEIAYLS--------------SLEILYLSGNNFESLPAIIKQMSQLR 912
+S+ + E+P + YL+ SLE L +S N LPA+ ++ +L
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL- 342
Query: 913 FIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPL 972
+ FN L +PELP LK LH ++ L+ P +P +E DL + L +PELP
Sbjct: 343 ---IASFNHLAEVPELPQNLKQLH-VEYNPLREFPDIPESVE--DLRMNSHLAEVPELPQ 396
Query: 973 CLQYLNLE 980
L+ L++E
Sbjct: 397 NLKQLHVE 404
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 37/191 (19%)
Query: 851 LESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQ 910
LE P L S + ++ + + +++++P SLE + N E LP + + +
Sbjct: 143 LEKLPE--LQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPEL-QNLPF 196
Query: 911 LRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVL---PFCLESLDLTGCNMLRSL 967
L I+ D N L+ LP+LPL L+ + + +L+ LP L PF + N+L++L
Sbjct: 197 LTAIY-ADNNSLKKLPDLPLSLESI-VAGNNILEELPELQNLPFL--TTIYADNNLLKTL 252
Query: 968 PELPLCLQYLNLEDCNMXXXXXXXXXXXXXXTVRNCNRLQSLPEILLCLQELDAS--VLE 1025
P+LP L+ LN+ D N L LPE+ L LD S +
Sbjct: 253 PDLPPSLEALNVRD----------------------NYLTDLPELPQSLTFLDVSENIFS 290
Query: 1026 KLSKHSPDLQW 1036
LS+ P+L +
Sbjct: 291 GLSELPPNLYY 301
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 943 LQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMXXXXXXXXXXXXXXTVRN 1002
L SLP LP LESL + CN L LPELP L+ L L D N V N
Sbjct: 83 LSSLPELPPHLESL-VASCNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSN 140
Query: 1003 CNRLQSLPEI----LLCLQELDASVLEKLSKHSPDLQW 1036
N+L+ LPE+ L + ++D + L+KL P L++
Sbjct: 141 -NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 177
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 32/151 (21%)
Query: 915 HLEDF----NMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTG---------- 960
HLE N L LPELP LK L L+D L++L LP LE L ++
Sbjct: 92 HLESLVASCNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150
Query: 961 -----------CNMLRSLPELPLCLQYLNLEDCNMXXXXXXXXXXXXXXTVRNCNRLQSL 1009
N L+ LP+LP L+++ + + + N L+ L
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210
Query: 1010 PEILLCLQELDA--SVLEKLSKHSPDLQWAP 1038
P++ L L+ + A ++LE+L P+LQ P
Sbjct: 211 PDLPLSLESIVAGNNILEEL----PELQNLP 237
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 651 NFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIE 710
N YL+A S +SL P +L +N S LIE P + ++ RL + +
Sbjct: 298 NLYYLNA-SSNEIRSLCDLPPSLE-----ELNVSNN-KLIELPALPPRLERLIASFNHLA 350
Query: 711 EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHL 770
EVP + L L V + + I S LR +N H E+ E ++L
Sbjct: 351 EVPELPQNLKQLHV-EYNPLREFPDIPESVEDLR----------MN-SHLAEVPELPQNL 398
Query: 771 KRIYSDRTPITELP 784
K+++ + P+ E P
Sbjct: 399 KQLHVETNPLREFP 412
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 886 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQS 945
S L+ L +S N SLP + ++ +L + N L SLP LP LK L ++ L S
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKEL-IVSGNRLTS 235
Query: 946 LPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 979
LPVLP L+ L ++G N L SLP LP L L++
Sbjct: 236 LPVLPSELKELMVSG-NRLTSLPMLPSGLLSLSV 268
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 868 LHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP- 926
L +S+ + I I L LYL+GN+ LPA IK +S LR + L N L SLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPA 287
Query: 927 ELPLC--LKYLHLIDCKMLQSLP 947
EL C LKY + D M+ +LP
Sbjct: 288 ELGSCFQLKYFYFFD-NMVTTLP 309
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 25/101 (24%)
Query: 699 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 758
+TRLYL +++ E+P+ I+ L++L VLDL S +L SL
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDL-----------SHNRLTSL------------ 285
Query: 759 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVE 799
P L LK Y +T LP F NL L+ L VE
Sbjct: 286 --PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 766 KMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIG 812
K + L R+Y + +TELP+ +NL L VL + ++L +LP +G
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELG 290
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 844 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP- 902
D +G++ P L L L IS A++E L++L L L+GN +SLP
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKE-------LTNLTYLILTGNQLQSLPN 102
Query: 903 AIIKQMSQLRFIHLEDFNMLQSLPELPL----CLKYLHLIDCKMLQSLPVLPF----CLE 954
+ +++ L+ + L + N LQSLP+ L YL+L LQSLP F L
Sbjct: 103 GVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLT 160
Query: 955 SLDLTGCNMLRSLPE 969
LDL+ N L+SLPE
Sbjct: 161 ELDLS-YNQLQSLPE 174
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 844 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP- 902
D +G++ P L L L IS A++E L++L L L+GN +SLP
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKE-------LTNLTYLILTGNQLQSLPN 102
Query: 903 AIIKQMSQLRFIHLEDFNMLQSLPELPL----CLKYLHLIDCKMLQSLPVLPF----CLE 954
+ +++ L+ + L + N LQSLP+ L YL+L LQSLP F L
Sbjct: 103 GVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLYLYH-NQLQSLPKGVFDKLTNLT 160
Query: 955 SLDLTGCNMLRSLPE 969
LDL N L+SLPE
Sbjct: 161 RLDLDN-NQLQSLPE 174
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 851 LESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP-AIIKQM 908
L+S P L+ + L +S ++ +P + L+ L ILYL N +SLP + ++
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99
Query: 909 SQLRFIHLEDFNMLQSLPE 927
+QL+ + L D N L+S+P+
Sbjct: 100 TQLKELAL-DTNQLKSVPD 117
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 862 LSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDF 919
L+ +G L +++ + +P + +L+ L+ LYL GN +SLP+ + ++++L+ + L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NT 140
Query: 920 NMLQSLP 926
N LQS+P
Sbjct: 141 NQLQSIP 147
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 862 LSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDF 919
L+ +G L +++ + +P + +L+ L+ LYL GN +SLP+ + ++++L+ + L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NT 140
Query: 920 NMLQSLP 926
N LQS+P
Sbjct: 141 NQLQSIP 147
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 861 GLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 918
GL ++ L + D + +P Q YLS L L+L N ES+P+ ++ LR + L +
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 919 FNMLQSLPELP----LCLKYLHLIDCKMLQSLPVLPFC--LESLDLTG 960
L+ + E + L+YL+L C L+ +P L LE L+L+G
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSG 187
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 6 SSSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQG 65
+S+ +++F++ ED + F L L + DD LR GD + ++ +
Sbjct: 16 TSAPPHDIFISHAWED-KADFVEALAHTL-RAAGAEVWYDDFSLRPGDSLRRSIDKGLGS 73
Query: 66 SKISVVIFSKDYASSKWCLHELLKILECKKMKGQIIIPVFYGVSPSDVRHQNGTFGD 122
S+ +V+ S + +W EL + + + I+P+++ VS +V + T D
Sbjct: 74 SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 861 GLSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 918
GL ++ L + D + +P Q YLS L L+L N ES+P+ ++ LR + L +
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 919 FNMLQSLPELP----LCLKYLHLIDCKMLQSLPVLPFC--LESLDLTG 960
L+ + E + L+YL+L C L+ +P L LE L+L+G
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSG 187
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.6 bits (83), Expect = 0.098, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNN 897
+L LD S L T GL + LH+ ++E+ P L++L+ LYL NN
Sbjct: 80 LLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNN 139
Query: 898 FESLP-AIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCKMLQS---LPVLPFCL 953
++LP + + L + L N + S+PE + LH +D +L V P
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHG-NRIPSVPE--HAFRGLHSLDRLLLHQNHVARVHPHAF 196
Query: 954 ESLD-----LTGCNMLRSLPE---LPL-CLQYLNLED 981
L N L LP +PL LQYL L D
Sbjct: 197 RDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 861 GLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 918
GL+ + L + D + IP YLS L+ L+L N ES+P+ ++ LR + L +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 919 FNMLQSLPELPL----CLKYLHLIDCKMLQSLPVLPFC-LESLDLTG 960
L + E L+YL+L C + + + P L+ LDL+G
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 840 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFE 899
LR LD K L GLS + L+++ +REIP + L L+ L LSGN+
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS 220
Query: 900 SL-PAIIKQM----------SQLRFIHLEDFNMLQSLPELPLCLKYLHLI 938
++ P + + SQ++ I F+ LQSL E+ L L L+
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 868 LHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNMLQSL 925
L + +++ +P + L+SL LYL GN +SLP + +++ L +++L N LQSL
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSL 91
Query: 926 PE 927
P
Sbjct: 92 PN 93
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 14/95 (14%)
Query: 885 LSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLID 939
L+ L +LYL+ N ++LPA I K++ L + + D N LQ+LP + + L L L D
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRL-D 117
Query: 940 CKMLQSLPVLPFCLESL-DLT----GCNMLRSLPE 969
L+SLP P +SL LT G N L+SLP+
Sbjct: 118 RNQLKSLP--PRVFDSLTKLTYLSLGYNELQSLPK 150
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 885 LSSLEILYLSGNNFES--LPAIIKQMSQLRFIHLED----------FNMLQSLPELPLCL 932
LSSLE+L ++GN+F+ LP I ++ L F+ L FN L SL L +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 933 KYLHLIDC---KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 979
+D K L SL VL + SL+ + + L P L +LNL
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 574
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 537 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLP--SMSTEEQLSYSKVQLPNG 594
FLDLS+ + L P AF ++S+L++ F+ ++ P +++ + L YS +
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Query: 595 ----LDYLPKKLRYLH 606
L + P L +L+
Sbjct: 558 KKQELQHFPSSLAFLN 573
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 885 LSSLEILYLSGNNFES--LPAIIKQMSQLRFIHLED----------FNMLQSLPELPLCL 932
LSSLE+L ++GN+F+ LP I ++ L F+ L FN L SL L +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 933 KYLHLIDC---KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 979
+D K L SL VL + SL+ + + L P L +LNL
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 255
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 537 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLP--SMSTEEQLSYSKVQLPNG 594
FLDLS+ + L P AF ++S+L++ F+ ++ P +++ + L YS +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 595 ----LDYLPKKLRYLH 606
L + P L +L+
Sbjct: 239 KKQELQHFPSSLAFLN 254
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 885 LSSLEILYLSGNNFES--LPAIIKQMSQLRFIHLED----------FNMLQSLPELPLCL 932
LSSLE+L ++GN+F+ LP I ++ L F+ L FN L SL L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 933 KYLHLIDC---KMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNL 979
+D K L SL VL + SL+ + + L P L +LNL
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 550
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 537 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLP--SMSTEEQLSYSKVQLPNG 594
FLDLS+ + L P AF ++S+L++ F+ ++ P +++ + L YS +
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 595 ----LDYLPKKLRYLH 606
L + P L +L+
Sbjct: 534 KKQELQHFPSSLAFLN 549
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 878 IPQEIAYLSSLEILYLSG-NNFES-LPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYL 935
IP +A L L LY+ G NN +P I +++QL ++++ N+ ++P+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF------- 120
Query: 936 HLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPEL 970
+++L L F +L T + SLP L
Sbjct: 121 ----LSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 840 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQE-IAYLSSLEILYLSGNNF 898
L +L C GL+ GL+A+ L++ D A++ +P + L +L L+L GN
Sbjct: 106 LHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 899 ESLP 902
S+P
Sbjct: 165 SSVP 168
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 840 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQE-IAYLSSLEILYLSGNNF 898
L +L C GL+ GL+A+ L++ D A++ +P + L +L L+L GN
Sbjct: 107 LHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 899 ESLP 902
S+P
Sbjct: 166 SSVP 169
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 184 TDSSNGLVGLNSRIEQIKPF--LCMDSSDTVQIVGI--------WGMGGIGKTTLAKAIF 233
T+S + + GL S+I++IK L + + + +GI +G G GKT LAKA+
Sbjct: 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237
Query: 234 DQFSHEF 240
+Q S F
Sbjct: 238 NQTSATF 244
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 855 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII 905
P FL GLS + +L++ EIP E+ L L+I+ L NN +LPA +
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 855 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII 905
P FL GLS + +L++ EIP E+ L L+I+ L NN +LPA +
Sbjct: 538 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 855 PRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYLSGNNFESLPAII 905
P FL GLS + +L++ EIP E+ L L+I+ L NN +LPA +
Sbjct: 533 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 877 EIPQEIAYLSSLEILYLSGNNFES-LPAIIKQMSQLRFIHLEDFNMLQSLPE 927
EIPQE+ Y+ +LE L L N+ +P+ + + L +I L + + +P+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 877 EIPQEIAYLSSLEILYLSGNNFES-LPAIIKQMSQLRFIHLEDFNMLQSLPE 927
EIPQE+ Y+ +LE L L N+ +P+ + + L +I L + + +P+
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 861 GLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLPA-IIKQMSQLRFIHLED 918
GL+++ L + D + IP YLS L L+L N ES+P+ ++ L + L +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 919 FNMLQSLPELP----LCLKYLHLIDCKMLQSLPVLPFC-LESLDLTG 960
L+ + E LKYL+L C + + P LE L+++G
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 11 YEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISV 70
+ F+++ G D+ L NL E++ + + + G I ++ I+ S S+
Sbjct: 13 FHAFISYSGHDS-FWVKNELLPNL-EKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 71 VIFSKDYASSKWCLHEL 87
+ S ++ S+WC +EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 867 LLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLED 918
+L + + + IP+++ +L +L+ L ++ N +S+P + +++ L++I L D
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 944
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|1Z25|A Chain A, Structure Of P.Furiosus Argonaute With Bound Mn2+
pdb|1Z26|A Chain A, Structure Of Pyrococcus Furiosus Argonaute With Bound
Tungstate
Length = 771
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 25/203 (12%)
Query: 227 TLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQ-MLSTTLSEKLEVAGP-NIPH 284
+L++ ++ + E E V D +GNS L + Q +L T S K V P +P
Sbjct: 316 SLSEIEVEKIAQELENKIRVRDDKGNSVPISQLNVQKSQLLLWTNYSRKYPVILPYEVPE 375
Query: 285 FTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGS-RIVVTTRDKRVLEKFRGEEKK 343
+ ++R + + I+LD L+ ++ F R +V + + +K+ KK
Sbjct: 376 KFR-KIREIPMFIILDS--------GLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKK 426
Query: 344 IYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHS------RSVVSYTKGNPLVLEVLGS- 396
N + F +F KE EDLN V S+ KG L L + +
Sbjct: 427 ARSTNEIGLP-----FLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFIAAR 481
Query: 397 -SLCLKRKSHWGKVLHDLNRICE 418
L ++ + L +LN I +
Sbjct: 482 NKLSSEKFEEIKRRLFNLNVISQ 504
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 944
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 944
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 926
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 126 ELKKQFQDKPEMVLKWRDALT---ETSHLAGHESAKFRHDAQLVN-----KIVEDVLKKL 177
ELK+ P L WRD L + + HE K D Q +N V DVL++
Sbjct: 332 ELKQNTFTTP---LVWRDILNIHKQQNAQKMHE--KLSTDTQPLNYFNALSAVRDVLREN 386
Query: 178 EKITVSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIG 224
+ I + + +N L + I+ KP +D G WG+ GIG
Sbjct: 387 QDIYLVNEGANTLDNARNIIDMYKPRRRLD-------CGTWGVMGIG 426
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 926
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 79 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 944
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 181
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 885 LSSLEILYLSGNNFES--LPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLID--C 940
LSSLE+L ++GN+F+ LP I ++ L F+ L + Q P L L +++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 941 KMLQSLP 947
L+S+P
Sbjct: 504 NQLKSVP 510
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLPELPL-CLKYLHLIDCKMLQ 944
N ++L P ++ +L + L + N L ELP L L +D +LQ
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN----LTELPAGLLNGLENLDTLLLQ 180
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 839 MLRSLDSSHCKGLESFPRTFLLG--LSAMGLLHISDYAVREIP-QEIAYLSSLEILYLSG 895
+L +LD SH + L+S P LLG L A+ +L +S + +P + L L+ LYL G
Sbjct: 78 VLGTLDLSHNQ-LQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 896 NNFESL-PAIIKQMSQLRFIHLEDFNMLQSLP 926
N ++L P ++ +L + L + N L LP
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLAN-NQLTELP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,943,845
Number of Sequences: 62578
Number of extensions: 1558634
Number of successful extensions: 4016
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3887
Number of HSP's gapped (non-prelim): 139
length of query: 1288
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1178
effective length of database: 8,089,757
effective search space: 9529733746
effective search space used: 9529733746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)