Query 000780
Match_columns 1288
No_of_seqs 1157 out of 6674
Neff 9.2
Searched_HMMs 46136
Date Mon Apr 1 23:37:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-143 3E-148 1419.9 92.3 1054 1-1240 1-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.9E-57 1.9E-61 560.4 30.8 453 191-753 161-651 (889)
3 PLN03194 putative disease resi 100.0 4.6E-43 9.9E-48 344.2 15.8 159 2-179 18-179 (187)
4 PLN00113 leucine-rich repeat r 100.0 5.5E-40 1.2E-44 436.9 30.1 512 507-1026 43-580 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.8E-37 3.8E-42 412.9 26.8 465 538-1012 98-590 (968)
6 PF00931 NB-ARC: NB-ARC domain 100.0 3.2E-34 6.9E-39 326.5 14.0 264 193-463 1-277 (287)
7 KOG0472 Leucine-rich repeat pr 99.9 7.5E-30 1.6E-34 272.1 -13.6 444 555-1037 43-548 (565)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-28 2.4E-33 274.7 -6.5 333 589-926 22-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 3.5E-28 7.5E-33 270.8 -3.0 333 550-917 48-394 (1255)
10 KOG4194 Membrane glycoprotein 99.9 9.6E-27 2.1E-31 258.8 3.0 373 537-937 56-446 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 6.3E-28 1.4E-32 257.5 -6.5 367 537-919 49-468 (565)
12 KOG4194 Membrane glycoprotein 99.9 1.9E-26 4.2E-31 256.4 3.6 350 537-917 82-447 (873)
13 PLN03210 Resistant to P. syrin 99.9 8.2E-23 1.8E-27 271.6 24.1 341 620-1008 556-908 (1153)
14 KOG0618 Serine/threonine phosp 99.9 1.2E-25 2.6E-30 264.0 -2.9 422 538-984 26-488 (1081)
15 KOG0618 Serine/threonine phosp 99.8 8.1E-23 1.7E-27 240.4 -0.8 378 545-943 102-489 (1081)
16 PF01582 TIR: TIR domain; Int 99.8 7.7E-21 1.7E-25 189.9 2.6 133 13-146 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.8 2.9E-18 6.3E-23 210.7 17.2 263 600-927 201-463 (788)
18 PRK15387 E3 ubiquitin-protein 99.8 3.6E-18 7.9E-23 209.8 15.5 255 680-990 205-463 (788)
19 smart00255 TIR Toll - interleu 99.7 4.5E-18 9.9E-23 170.7 11.6 136 10-149 1-138 (140)
20 PRK15370 E3 ubiquitin-protein 99.7 7.3E-17 1.6E-21 200.1 12.0 247 600-922 178-428 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 5.5E-16 1.2E-20 192.4 16.2 223 680-927 182-405 (754)
22 KOG4237 Extracellular matrix p 99.7 9.8E-18 2.1E-22 180.2 -1.3 138 591-779 58-199 (498)
23 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.3E-21 152.6 -0.3 172 612-837 23-195 (264)
24 KOG4237 Extracellular matrix p 99.6 1.5E-16 3.3E-21 171.1 -3.8 259 536-803 70-358 (498)
25 KOG0617 Ras suppressor protein 99.5 1.4E-15 3.1E-20 145.0 -0.2 160 699-908 35-195 (264)
26 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.7E-19 167.3 -1.5 93 712-804 73-178 (319)
27 PF13676 TIR_2: TIR domain; PD 99.4 2.8E-13 6E-18 127.4 3.6 87 13-107 1-87 (102)
28 cd00116 LRR_RI Leucine-rich re 99.4 7.7E-14 1.7E-18 161.8 -0.4 151 699-849 25-204 (319)
29 PRK04841 transcriptional regul 99.3 8.2E-11 1.8E-15 156.7 26.2 297 182-503 8-335 (903)
30 KOG4658 Apoptotic ATPase [Sign 99.2 4.6E-12 9.9E-17 160.1 2.7 245 698-946 524-786 (889)
31 PRK00411 cdc6 cell division co 99.1 1.1E-08 2.3E-13 122.2 25.4 282 185-482 27-358 (394)
32 TIGR00635 ruvB Holliday juncti 99.1 1.4E-09 3E-14 124.8 15.3 271 188-482 4-289 (305)
33 KOG0532 Leucine-rich repeat (L 99.1 3.7E-11 8E-16 135.8 1.8 212 702-920 55-271 (722)
34 PF01637 Arch_ATPase: Archaeal 99.0 5.1E-10 1.1E-14 123.3 9.0 195 190-393 1-233 (234)
35 PRK00080 ruvB Holliday junctio 99.0 3E-09 6.4E-14 122.7 15.0 276 184-482 21-310 (328)
36 COG3899 Predicted ATPase [Gene 99.0 5.2E-09 1.1E-13 133.4 18.1 327 189-528 1-406 (849)
37 KOG3207 Beta-tubulin folding c 99.0 1.7E-10 3.8E-15 126.9 2.0 204 717-921 118-338 (505)
38 TIGR02928 orc1/cdc6 family rep 99.0 4E-08 8.8E-13 116.0 22.1 283 185-482 12-350 (365)
39 COG2909 MalT ATP-dependent tra 99.0 2.9E-08 6.3E-13 119.0 20.2 296 182-504 13-342 (894)
40 TIGR03015 pepcterm_ATPase puta 98.9 2.1E-08 4.6E-13 112.9 18.2 181 211-398 42-242 (269)
41 PF05729 NACHT: NACHT domain 98.9 6.1E-09 1.3E-13 107.9 12.1 142 213-363 1-163 (166)
42 PRK15386 type III secretion pr 98.9 1.1E-08 2.3E-13 116.2 12.0 163 863-1061 52-218 (426)
43 COG4886 Leucine-rich repeat (L 98.9 2.1E-09 4.6E-14 128.3 6.4 180 742-926 114-294 (394)
44 COG4886 Leucine-rich repeat (L 98.9 2.7E-09 5.8E-14 127.4 6.7 154 698-855 141-294 (394)
45 KOG0532 Leucine-rich repeat (L 98.8 4.4E-10 9.6E-15 127.3 -2.2 170 602-804 77-247 (722)
46 KOG1259 Nischarin, modulator o 98.8 1.5E-09 3.3E-14 113.2 1.4 108 810-921 279-386 (490)
47 KOG3207 Beta-tubulin folding c 98.8 1.8E-09 3.8E-14 119.2 0.7 185 715-899 141-339 (505)
48 KOG1259 Nischarin, modulator o 98.7 1.2E-08 2.6E-13 106.7 4.4 135 694-832 281-416 (490)
49 COG2256 MGS1 ATPase related to 98.7 1.9E-07 4.2E-12 103.1 13.0 150 210-388 46-206 (436)
50 KOG1909 Ran GTPase-activating 98.6 2.9E-09 6.3E-14 114.6 -2.6 224 697-921 30-310 (382)
51 KOG1909 Ran GTPase-activating 98.6 2.2E-08 4.8E-13 107.9 2.7 188 716-921 26-253 (382)
52 PRK13342 recombination factor 98.6 2E-06 4.4E-11 102.3 19.0 179 184-394 8-196 (413)
53 PF14580 LRR_9: Leucine-rich r 98.6 6.8E-08 1.5E-12 98.4 5.4 104 816-923 20-127 (175)
54 PF14580 LRR_9: Leucine-rich r 98.6 4E-08 8.6E-13 100.1 3.7 121 769-917 20-148 (175)
55 PRK06893 DNA replication initi 98.6 8.8E-07 1.9E-11 96.3 14.4 149 211-392 38-201 (229)
56 PRK15386 type III secretion pr 98.5 4.2E-07 9E-12 103.5 11.5 154 837-1005 51-212 (426)
57 PTZ00202 tuzin; Provisional 98.4 8.9E-06 1.9E-10 91.8 18.8 185 166-362 236-433 (550)
58 COG3903 Predicted ATPase [Gene 98.4 3.3E-07 7.2E-12 102.2 7.1 279 210-500 12-314 (414)
59 TIGR03420 DnaA_homol_Hda DnaA 98.4 3E-06 6.5E-11 92.6 13.4 173 187-395 14-202 (226)
60 KOG3678 SARM protein (with ste 98.4 9.3E-07 2E-11 97.4 8.9 141 8-179 610-758 (832)
61 PTZ00112 origin recognition co 98.4 1.2E-05 2.7E-10 97.5 19.0 209 184-398 751-986 (1164)
62 PF13173 AAA_14: AAA domain 98.3 3.5E-06 7.6E-11 82.6 10.8 121 213-355 3-127 (128)
63 PRK07471 DNA polymerase III su 98.3 4.1E-05 8.8E-10 88.5 19.9 202 183-395 14-239 (365)
64 PLN03150 hypothetical protein; 98.3 1.2E-06 2.5E-11 109.6 7.6 107 699-805 420-529 (623)
65 PF05496 RuvB_N: Holliday junc 98.3 1.2E-05 2.6E-10 83.6 13.2 179 182-392 18-219 (233)
66 PRK12402 replication factor C 98.3 8.3E-06 1.8E-10 95.3 13.8 197 184-391 11-223 (337)
67 TIGR01242 26Sp45 26S proteasom 98.2 6.1E-06 1.3E-10 96.7 12.5 177 186-388 120-328 (364)
68 PRK14961 DNA polymerase III su 98.2 2.3E-05 4.9E-10 91.6 17.0 192 184-390 12-216 (363)
69 PRK07003 DNA polymerase III su 98.2 1.2E-05 2.7E-10 97.4 14.6 195 184-393 12-220 (830)
70 PRK14963 DNA polymerase III su 98.2 9.5E-06 2.1E-10 97.6 13.7 192 184-391 10-214 (504)
71 PRK14949 DNA polymerase III su 98.2 1.6E-05 3.5E-10 98.4 15.8 182 184-391 12-217 (944)
72 PRK14960 DNA polymerase III su 98.2 2E-05 4.3E-10 94.8 15.9 180 184-389 11-214 (702)
73 PF13191 AAA_16: AAA ATPase do 98.2 2.4E-06 5.2E-11 90.2 7.4 51 189-239 1-51 (185)
74 KOG0531 Protein phosphatase 1, 98.2 2.9E-07 6.2E-12 110.1 -0.6 126 700-830 75-201 (414)
75 PLN03150 hypothetical protein; 98.2 1.2E-06 2.7E-11 109.4 4.9 92 721-812 419-511 (623)
76 cd00009 AAA The AAA+ (ATPases 98.2 1E-05 2.2E-10 81.5 10.7 123 191-332 1-131 (151)
77 PRK12323 DNA polymerase III su 98.2 2.1E-05 4.6E-10 94.2 14.5 197 184-391 12-222 (700)
78 PLN03025 replication factor C 98.2 2.1E-05 4.5E-10 90.5 14.1 183 183-388 8-194 (319)
79 PRK05564 DNA polymerase III su 98.2 3.4E-05 7.4E-10 88.5 15.9 178 188-394 4-190 (313)
80 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.4E-12 99.8 -4.3 158 697-874 185-349 (419)
81 PRK00440 rfc replication facto 98.1 4.5E-05 9.8E-10 88.3 16.7 184 184-390 13-199 (319)
82 PRK13341 recombination factor 98.1 2.5E-05 5.3E-10 97.7 14.4 172 184-388 24-211 (725)
83 PRK09112 DNA polymerase III su 98.1 4.1E-05 8.8E-10 88.0 14.7 197 183-394 18-240 (351)
84 PRK04195 replication factor C 98.1 9.1E-05 2E-09 90.1 18.3 182 183-391 9-199 (482)
85 KOG0531 Protein phosphatase 1, 98.1 8E-07 1.7E-11 106.3 0.5 33 817-849 234-266 (414)
86 PF13401 AAA_22: AAA domain; P 98.1 7.3E-06 1.6E-10 80.9 7.1 113 211-330 3-125 (131)
87 COG1474 CDC6 Cdc6-related prot 98.1 0.00088 1.9E-08 77.4 24.9 281 185-482 14-334 (366)
88 PRK14957 DNA polymerase III su 98.1 7.2E-05 1.6E-09 90.2 16.4 185 184-394 12-221 (546)
89 PF14516 AAA_35: AAA-like doma 98.0 0.00051 1.1E-08 79.1 22.7 281 184-490 7-322 (331)
90 PRK06645 DNA polymerase III su 98.0 7.7E-05 1.7E-09 89.4 16.3 186 183-389 16-224 (507)
91 PRK08691 DNA polymerase III su 98.0 4.1E-05 9E-10 93.0 14.1 192 184-390 12-216 (709)
92 PRK07940 DNA polymerase III su 98.0 5.7E-05 1.2E-09 88.1 14.7 180 187-394 4-213 (394)
93 PF13855 LRR_8: Leucine rich r 98.0 3.7E-06 7.9E-11 70.3 3.4 58 863-920 1-60 (61)
94 PRK14962 DNA polymerase III su 98.0 8.5E-05 1.8E-09 88.8 16.3 188 183-396 9-221 (472)
95 PRK08727 hypothetical protein; 98.0 7.6E-05 1.6E-09 81.4 14.5 166 187-388 18-198 (233)
96 PF00308 Bac_DnaA: Bacterial d 98.0 8.4E-05 1.8E-09 80.0 14.6 177 188-388 8-202 (219)
97 PRK08903 DnaA regulatory inact 98.0 5.6E-05 1.2E-09 82.6 13.4 173 187-398 17-203 (227)
98 PRK14956 DNA polymerase III su 98.0 6.6E-05 1.4E-09 88.0 14.5 193 183-389 13-217 (484)
99 PRK07994 DNA polymerase III su 98.0 8.5E-05 1.8E-09 90.9 15.7 192 184-390 12-216 (647)
100 PRK08084 DNA replication initi 98.0 8.6E-05 1.9E-09 81.1 14.4 166 188-391 22-206 (235)
101 TIGR00678 holB DNA polymerase 98.0 7.6E-05 1.7E-09 78.8 13.5 161 199-390 3-187 (188)
102 TIGR02397 dnaX_nterm DNA polym 98.0 0.00016 3.6E-09 85.0 17.6 186 183-394 9-218 (355)
103 PRK14087 dnaA chromosomal repl 98.0 0.00021 4.5E-09 85.4 18.3 164 212-395 141-320 (450)
104 PRK14964 DNA polymerase III su 98.0 0.00012 2.6E-09 87.0 15.7 180 184-389 9-212 (491)
105 PRK09087 hypothetical protein; 98.0 7.8E-05 1.7E-09 80.5 13.0 137 212-392 44-193 (226)
106 PRK03992 proteasome-activating 97.9 5.3E-05 1.2E-09 89.1 12.4 175 186-387 129-336 (389)
107 PRK05642 DNA replication initi 97.9 0.00012 2.5E-09 79.9 13.8 148 212-392 45-206 (234)
108 KOG1859 Leucine-rich repeat pr 97.9 3E-07 6.5E-12 107.3 -7.1 182 713-902 102-295 (1096)
109 PRK05896 DNA polymerase III su 97.9 0.00012 2.7E-09 88.1 14.6 196 183-394 11-221 (605)
110 PRK14951 DNA polymerase III su 97.9 0.00017 3.8E-09 88.1 15.7 196 184-389 12-220 (618)
111 PRK14955 DNA polymerase III su 97.9 0.00016 3.5E-09 85.5 14.7 198 183-389 11-223 (397)
112 TIGR02903 spore_lon_C ATP-depe 97.9 0.00017 3.7E-09 89.6 15.1 205 184-397 150-398 (615)
113 KOG2120 SCF ubiquitin ligase, 97.8 4.1E-07 8.8E-12 95.7 -7.1 176 745-941 186-374 (419)
114 PHA02544 44 clamp loader, smal 97.8 0.00017 3.6E-09 83.3 13.6 152 183-361 16-171 (316)
115 PF13855 LRR_8: Leucine rich r 97.8 1.7E-05 3.6E-10 66.3 3.6 56 699-754 3-59 (61)
116 PRK14958 DNA polymerase III su 97.8 0.00019 4.1E-09 86.8 14.1 180 184-389 12-215 (509)
117 PRK14969 DNA polymerase III su 97.8 0.00021 4.5E-09 87.1 13.8 180 184-389 12-215 (527)
118 COG2255 RuvB Holliday junction 97.8 0.00045 9.8E-09 73.4 14.3 264 183-485 21-315 (332)
119 TIGR02639 ClpA ATP-dependent C 97.8 0.00022 4.7E-09 91.2 14.6 172 165-363 164-358 (731)
120 PRK14970 DNA polymerase III su 97.8 0.00024 5.3E-09 83.7 13.9 182 183-389 12-204 (367)
121 KOG1859 Leucine-rich repeat pr 97.8 6.9E-07 1.5E-11 104.4 -7.2 128 698-829 165-293 (1096)
122 PRK00149 dnaA chromosomal repl 97.7 0.001 2.2E-08 80.4 19.1 156 211-390 147-318 (450)
123 PTZ00361 26 proteosome regulat 97.7 0.0003 6.5E-09 82.8 13.5 157 186-365 181-369 (438)
124 KOG2982 Uncharacterized conser 97.7 1.3E-05 2.8E-10 84.7 1.8 66 861-926 197-266 (418)
125 PRK14959 DNA polymerase III su 97.7 0.00049 1.1E-08 83.6 15.4 199 184-397 12-224 (624)
126 PRK07133 DNA polymerase III su 97.7 0.00038 8.2E-09 85.8 14.6 195 183-393 13-219 (725)
127 PRK14952 DNA polymerase III su 97.7 0.00079 1.7E-08 82.2 17.2 197 183-394 8-220 (584)
128 PRK14954 DNA polymerase III su 97.7 0.00059 1.3E-08 83.9 16.2 197 184-389 12-223 (620)
129 PRK07764 DNA polymerase III su 97.7 0.00059 1.3E-08 86.7 16.3 181 183-389 10-216 (824)
130 TIGR02881 spore_V_K stage V sp 97.7 0.00043 9.2E-09 77.2 13.5 133 211-364 41-192 (261)
131 PRK14950 DNA polymerase III su 97.7 0.00054 1.2E-08 85.1 15.7 197 183-393 11-220 (585)
132 TIGR00362 DnaA chromosomal rep 97.7 0.0015 3.3E-08 78.0 19.0 157 212-390 136-306 (405)
133 PRK09111 DNA polymerase III su 97.7 0.00052 1.1E-08 84.3 14.9 199 184-392 20-231 (598)
134 KOG2227 Pre-initiation complex 97.7 0.00061 1.3E-08 77.3 14.0 210 184-398 146-376 (529)
135 KOG2028 ATPase related to the 97.7 0.00023 5.1E-09 77.4 10.3 149 185-361 135-292 (554)
136 PRK09376 rho transcription ter 97.6 7.5E-05 1.6E-09 84.5 6.6 93 211-306 168-269 (416)
137 PRK14088 dnaA chromosomal repl 97.6 0.00086 1.9E-08 80.1 16.0 155 212-389 130-300 (440)
138 TIGR02880 cbbX_cfxQ probable R 97.6 0.0008 1.7E-08 75.6 14.8 130 214-363 60-208 (284)
139 PRK06305 DNA polymerase III su 97.6 0.00083 1.8E-08 80.4 15.7 182 184-389 13-217 (451)
140 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00088 1.9E-08 86.3 16.5 153 185-362 184-362 (852)
141 PRK08451 DNA polymerase III su 97.6 0.00086 1.9E-08 80.6 15.1 183 184-391 10-215 (535)
142 TIGR03689 pup_AAA proteasome A 97.6 0.00058 1.3E-08 81.6 13.5 164 183-363 177-378 (512)
143 KOG4341 F-box protein containi 97.6 2.3E-06 4.9E-11 94.7 -6.3 110 836-945 318-441 (483)
144 PTZ00454 26S protease regulato 97.6 0.00041 8.9E-09 81.2 11.9 178 184-387 141-350 (398)
145 PRK14953 DNA polymerase III su 97.6 0.0016 3.5E-08 78.5 17.0 178 184-392 12-218 (486)
146 KOG2982 Uncharacterized conser 97.6 4E-05 8.6E-10 81.1 2.8 184 743-947 70-266 (418)
147 KOG2543 Origin recognition com 97.5 0.0029 6.2E-08 70.2 16.8 170 186-363 4-193 (438)
148 PRK12422 chromosomal replicati 97.5 0.0032 6.8E-08 75.1 18.8 154 212-387 141-306 (445)
149 cd01128 rho_factor Transcripti 97.5 0.00011 2.3E-09 80.1 5.9 92 211-305 15-115 (249)
150 PF08937 DUF1863: MTH538 TIR-l 97.5 0.00013 2.8E-09 71.6 5.7 89 11-105 1-106 (130)
151 PRK14948 DNA polymerase III su 97.5 0.0019 4.2E-08 80.0 16.8 196 184-392 12-220 (620)
152 PRK05707 DNA polymerase III su 97.5 0.0019 4.1E-08 73.8 15.6 94 293-394 107-203 (328)
153 CHL00095 clpC Clp protease ATP 97.5 0.00069 1.5E-08 87.8 13.4 169 165-361 161-352 (821)
154 CHL00181 cbbX CbbX; Provisiona 97.5 0.0039 8.4E-08 70.0 17.5 132 213-364 60-210 (287)
155 PRK07399 DNA polymerase III su 97.5 0.0059 1.3E-07 69.4 19.1 192 188-393 4-220 (314)
156 PRK06647 DNA polymerase III su 97.5 0.0021 4.6E-08 78.6 16.5 193 183-390 11-216 (563)
157 PRK07952 DNA replication prote 97.5 0.002 4.3E-08 70.1 14.4 35 212-246 99-133 (244)
158 PRK06620 hypothetical protein; 97.5 0.00058 1.2E-08 73.2 10.2 129 213-387 45-182 (214)
159 PF12799 LRR_4: Leucine Rich r 97.5 0.00014 3.1E-09 55.6 3.8 39 864-902 2-40 (44)
160 PRK14971 DNA polymerase III su 97.4 0.0018 3.9E-08 80.2 15.3 179 184-389 13-217 (614)
161 KOG4579 Leucine-rich repeat (L 97.4 1.8E-05 3.8E-10 74.3 -2.0 104 817-921 29-135 (177)
162 PRK14086 dnaA chromosomal repl 97.4 0.0025 5.5E-08 77.2 15.4 149 213-387 315-481 (617)
163 PRK10865 protein disaggregatio 97.4 0.0012 2.7E-08 85.3 13.8 51 185-238 175-225 (857)
164 PRK11034 clpA ATP-dependent Cl 97.4 0.001 2.2E-08 84.0 12.2 48 187-237 185-232 (758)
165 PF05673 DUF815: Protein of un 97.4 0.0054 1.2E-07 65.2 15.7 57 184-240 23-80 (249)
166 TIGR00767 rho transcription te 97.4 0.00042 9.2E-09 79.0 8.0 93 211-306 167-268 (415)
167 KOG4341 F-box protein containi 97.4 1.1E-05 2.4E-10 89.4 -4.5 238 769-1006 139-414 (483)
168 KOG0989 Replication factor C, 97.4 0.0014 3E-08 70.6 11.2 192 183-394 31-231 (346)
169 PRK05563 DNA polymerase III su 97.4 0.0036 7.8E-08 77.1 16.5 192 183-389 11-215 (559)
170 PRK08116 hypothetical protein; 97.4 0.00062 1.3E-08 75.6 9.1 101 213-330 115-220 (268)
171 COG0593 DnaA ATPase involved i 97.3 0.0043 9.2E-08 71.5 15.7 180 211-413 112-313 (408)
172 PF00004 AAA: ATPase family as 97.3 0.00089 1.9E-08 66.0 9.0 23 215-237 1-23 (132)
173 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0093 2E-07 71.6 19.0 177 187-387 227-428 (489)
174 PRK12377 putative replication 97.3 0.0046 1E-07 67.4 15.0 36 212-247 101-136 (248)
175 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.1E-08 84.1 14.2 51 185-238 170-220 (852)
176 PRK14965 DNA polymerase III su 97.3 0.0019 4.2E-08 79.8 13.6 197 183-394 11-221 (576)
177 CHL00176 ftsH cell division pr 97.3 0.0026 5.6E-08 78.9 14.5 176 186-386 181-386 (638)
178 KOG3665 ZYG-1-like serine/thre 97.2 7.4E-05 1.6E-09 93.1 0.1 150 744-918 122-284 (699)
179 COG3267 ExeA Type II secretory 97.2 0.01 2.2E-07 62.8 15.7 179 210-396 49-247 (269)
180 COG1222 RPT1 ATP-dependent 26S 97.2 0.0033 7.1E-08 69.3 11.8 198 189-413 152-392 (406)
181 KOG0991 Replication factor C, 97.2 0.0025 5.5E-08 65.4 10.2 52 184-238 23-74 (333)
182 TIGR01241 FtsH_fam ATP-depende 97.2 0.0017 3.7E-08 79.5 10.8 177 186-387 53-259 (495)
183 PRK08769 DNA polymerase III su 97.1 0.0098 2.1E-07 67.3 15.9 94 293-395 113-209 (319)
184 PF05621 TniB: Bacterial TniB 97.1 0.012 2.6E-07 64.7 15.7 194 188-391 34-258 (302)
185 PF12799 LRR_4: Leucine Rich r 97.1 0.00061 1.3E-08 52.1 4.1 37 886-922 1-37 (44)
186 COG1373 Predicted ATPase (AAA+ 97.1 0.0047 1E-07 72.8 13.6 148 214-393 39-191 (398)
187 PRK08181 transposase; Validate 97.1 0.0026 5.7E-08 70.2 10.0 35 213-247 107-141 (269)
188 PRK09183 transposase/IS protei 97.0 0.0078 1.7E-07 66.6 13.3 35 212-246 102-136 (259)
189 smart00382 AAA ATPases associa 97.0 0.0013 2.9E-08 65.4 6.7 35 213-247 3-37 (148)
190 PRK06871 DNA polymerase III su 97.0 0.015 3.2E-07 66.0 15.6 174 198-391 12-200 (325)
191 TIGR01243 CDC48 AAA family ATP 97.0 0.0095 2.1E-07 76.7 15.9 178 186-388 176-381 (733)
192 TIGR01243 CDC48 AAA family ATP 97.0 0.0089 1.9E-07 76.9 15.6 176 187-388 452-657 (733)
193 COG5238 RNA1 Ran GTPase-activa 97.0 0.00027 5.8E-09 74.0 1.4 37 717-753 27-67 (388)
194 PRK08058 DNA polymerase III su 97.0 0.0075 1.6E-07 69.4 13.3 151 189-362 6-181 (329)
195 PRK06526 transposase; Provisio 97.0 0.0061 1.3E-07 67.0 11.9 34 212-245 98-131 (254)
196 KOG4579 Leucine-rich repeat (L 97.0 5.9E-05 1.3E-09 70.9 -3.2 112 720-834 27-142 (177)
197 PRK10865 protein disaggregatio 96.9 0.0099 2.1E-07 77.1 15.4 52 187-238 567-624 (857)
198 KOG0744 AAA+-type ATPase [Post 96.9 0.0035 7.5E-08 67.7 9.2 135 211-361 176-338 (423)
199 PRK10536 hypothetical protein; 96.9 0.0046 9.9E-08 66.6 10.1 55 187-246 54-110 (262)
200 COG0466 Lon ATP-dependent Lon 96.9 0.022 4.9E-07 68.5 16.5 160 188-363 323-508 (782)
201 PRK06090 DNA polymerase III su 96.9 0.035 7.5E-07 62.9 17.3 106 294-413 109-217 (319)
202 PF01695 IstB_IS21: IstB-like 96.9 0.0016 3.6E-08 67.4 6.3 36 212-247 47-82 (178)
203 PLN00020 ribulose bisphosphate 96.9 0.012 2.5E-07 66.3 13.0 154 210-389 146-333 (413)
204 KOG3665 ZYG-1-like serine/thre 96.9 0.0007 1.5E-08 84.6 4.0 86 836-922 146-233 (699)
205 TIGR00602 rad24 checkpoint pro 96.9 0.0067 1.5E-07 74.7 12.3 55 183-237 79-135 (637)
206 KOG0741 AAA+-type ATPase [Post 96.8 0.032 6.9E-07 64.4 15.9 132 210-362 536-685 (744)
207 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0028 6E-08 69.4 7.4 94 211-307 68-177 (274)
208 PRK11034 clpA ATP-dependent Cl 96.8 0.014 2.9E-07 74.0 14.5 50 188-237 458-513 (758)
209 TIGR02639 ClpA ATP-dependent C 96.8 0.0099 2.2E-07 76.2 13.4 50 188-237 454-509 (731)
210 PRK00771 signal recognition pa 96.8 0.013 2.9E-07 69.1 13.2 106 119-239 4-122 (437)
211 PRK07993 DNA polymerase III su 96.8 0.022 4.7E-07 65.4 14.5 93 292-392 107-202 (334)
212 PRK11331 5-methylcytosine-spec 96.7 0.0035 7.5E-08 73.0 7.9 55 188-247 175-231 (459)
213 cd01131 PilT Pilus retraction 96.7 0.0049 1.1E-07 65.4 8.5 112 213-336 2-114 (198)
214 TIGR02640 gas_vesic_GvpN gas v 96.7 0.025 5.4E-07 63.0 14.3 27 213-239 22-48 (262)
215 TIGR03346 chaperone_ClpB ATP-d 96.7 0.016 3.4E-07 75.7 14.5 52 188-239 565-622 (852)
216 KOG1644 U2-associated snRNP A' 96.7 0.0013 2.9E-08 66.4 3.6 82 720-803 42-125 (233)
217 PRK10787 DNA-binding ATP-depen 96.7 0.048 1E-06 69.7 18.1 161 188-363 322-506 (784)
218 TIGR00763 lon ATP-dependent pr 96.6 0.042 9E-07 71.0 17.7 53 188-240 320-375 (775)
219 KOG0733 Nuclear AAA ATPase (VC 96.6 0.011 2.4E-07 69.3 10.9 156 187-364 189-375 (802)
220 PF10443 RNA12: RNA12 protein; 96.6 0.14 3.1E-06 59.0 19.7 106 294-400 149-284 (431)
221 PRK13531 regulatory ATPase Rav 96.6 0.019 4.1E-07 67.6 12.9 45 189-238 21-65 (498)
222 PF13177 DNA_pol3_delta2: DNA 96.6 0.013 2.8E-07 59.8 10.3 139 192-351 1-162 (162)
223 KOG0735 AAA+-type ATPase [Post 96.6 0.025 5.4E-07 67.6 13.2 163 212-394 431-616 (952)
224 PF08357 SEFIR: SEFIR domain; 96.6 0.0022 4.8E-08 64.8 4.2 64 13-77 3-70 (150)
225 COG5238 RNA1 Ran GTPase-activa 96.5 0.00037 7.9E-09 73.1 -1.6 106 697-803 30-169 (388)
226 COG0542 clpA ATP-binding subun 96.5 0.012 2.5E-07 73.0 10.8 121 188-318 491-620 (786)
227 PRK08118 topology modulation p 96.5 0.0049 1.1E-07 63.3 6.3 32 214-245 3-37 (167)
228 PF07728 AAA_5: AAA domain (dy 96.5 0.0062 1.3E-07 60.6 7.0 22 215-236 2-23 (139)
229 PRK06921 hypothetical protein; 96.5 0.004 8.6E-08 69.1 5.9 37 211-247 116-153 (266)
230 PF02562 PhoH: PhoH-like prote 96.5 0.0074 1.6E-07 63.3 7.5 125 193-330 5-155 (205)
231 TIGR00959 ffh signal recogniti 96.5 0.026 5.7E-07 66.5 12.9 27 211-237 98-124 (428)
232 PRK11889 flhF flagellar biosyn 96.4 0.096 2.1E-06 60.0 16.6 37 210-246 239-275 (436)
233 COG1484 DnaC DNA replication p 96.4 0.011 2.5E-07 64.9 9.2 36 211-246 104-139 (254)
234 PRK10867 signal recognition pa 96.4 0.026 5.6E-07 66.6 12.6 29 211-239 99-127 (433)
235 TIGR03345 VI_ClpV1 type VI sec 96.4 0.014 3E-07 75.5 11.1 51 188-238 566-622 (852)
236 PRK07261 topology modulation p 96.4 0.011 2.5E-07 61.0 8.5 23 214-236 2-24 (171)
237 PF04665 Pox_A32: Poxvirus A32 96.4 0.011 2.5E-07 63.3 8.6 35 213-247 14-48 (241)
238 PRK06835 DNA replication prote 96.3 0.015 3.2E-07 66.4 9.6 35 213-247 184-218 (329)
239 PHA00729 NTP-binding motif con 96.3 0.043 9.2E-07 58.3 12.2 27 211-237 16-42 (226)
240 PRK06964 DNA polymerase III su 96.3 0.11 2.4E-06 59.5 16.4 90 294-394 133-225 (342)
241 TIGR01425 SRP54_euk signal rec 96.3 0.11 2.4E-06 61.0 16.5 29 211-239 99-127 (429)
242 PRK14974 cell division protein 96.3 0.078 1.7E-06 60.5 15.0 29 211-239 139-167 (336)
243 KOG1644 U2-associated snRNP A' 96.3 0.0045 9.7E-08 62.7 4.3 57 862-918 87-149 (233)
244 CHL00095 clpC Clp protease ATP 96.3 0.021 4.5E-07 74.3 11.7 119 188-316 509-636 (821)
245 PRK12608 transcription termina 96.2 0.015 3.1E-07 66.4 8.7 101 200-305 123-232 (380)
246 PRK10733 hflB ATP-dependent me 96.2 0.027 5.8E-07 70.9 11.8 131 213-365 186-337 (644)
247 KOG0730 AAA+-type ATPase [Post 96.2 0.054 1.2E-06 64.7 13.3 156 189-366 435-618 (693)
248 PF13207 AAA_17: AAA domain; P 96.2 0.0042 9.2E-08 60.1 3.6 23 214-236 1-23 (121)
249 COG4608 AppF ABC-type oligopep 96.1 0.018 4E-07 62.0 8.5 147 211-360 38-199 (268)
250 cd01120 RecA-like_NTPases RecA 96.1 0.01 2.2E-07 60.8 6.4 34 214-247 1-34 (165)
251 cd00544 CobU Adenosylcobinamid 96.1 0.013 2.9E-07 60.0 6.7 79 215-302 2-82 (169)
252 COG1618 Predicted nucleotide k 96.1 0.0065 1.4E-07 59.4 4.1 40 212-251 5-46 (179)
253 PRK06696 uridine kinase; Valid 96.1 0.01 2.2E-07 64.5 6.2 47 193-239 3-49 (223)
254 TIGR02902 spore_lonB ATP-depen 96.0 0.033 7.2E-07 68.4 11.2 49 184-235 61-109 (531)
255 PRK08939 primosomal protein Dn 96.0 0.029 6.4E-07 63.5 9.6 37 211-247 155-191 (306)
256 smart00763 AAA_PrkA PrkA AAA d 96.0 0.0063 1.4E-07 69.0 4.2 49 189-237 52-103 (361)
257 PRK08699 DNA polymerase III su 96.0 0.072 1.6E-06 60.9 12.8 68 293-362 114-184 (325)
258 PRK04296 thymidine kinase; Pro 95.9 0.019 4.1E-07 60.5 7.5 110 213-332 3-117 (190)
259 COG0488 Uup ATPase components 95.9 0.13 2.9E-06 62.4 15.4 130 212-349 348-511 (530)
260 COG0470 HolB ATPase involved i 95.9 0.089 1.9E-06 60.9 13.8 144 189-354 2-172 (325)
261 COG1223 Predicted ATPase (AAA+ 95.8 0.024 5.3E-07 59.5 7.4 174 187-387 120-318 (368)
262 KOG0728 26S proteasome regulat 95.8 0.34 7.3E-06 50.7 15.4 150 188-363 146-331 (404)
263 PRK05541 adenylylsulfate kinas 95.8 0.047 1E-06 56.8 9.7 37 211-247 6-42 (176)
264 PRK04132 replication factor C 95.8 0.087 1.9E-06 67.0 13.5 151 218-389 570-726 (846)
265 TIGR00064 ftsY signal recognit 95.8 0.052 1.1E-06 60.4 10.3 37 210-246 70-106 (272)
266 PRK09361 radB DNA repair and r 95.7 0.033 7.1E-07 60.7 8.4 49 198-247 10-58 (225)
267 KOG1514 Origin recognition com 95.7 0.17 3.8E-06 60.9 14.7 204 186-397 394-624 (767)
268 COG2812 DnaX DNA polymerase II 95.7 0.064 1.4E-06 64.1 11.1 183 184-387 12-213 (515)
269 PF00448 SRP54: SRP54-type pro 95.7 0.026 5.7E-07 59.5 7.1 36 212-247 1-36 (196)
270 KOG1947 Leucine rich repeat pr 95.7 0.00098 2.1E-08 82.1 -4.3 82 836-917 241-329 (482)
271 cd01121 Sms Sms (bacterial rad 95.6 0.056 1.2E-06 62.9 10.2 50 197-247 68-117 (372)
272 COG0542 clpA ATP-binding subun 95.6 0.074 1.6E-06 66.1 11.6 154 187-362 169-345 (786)
273 cd01129 PulE-GspE PulE/GspE Th 95.6 0.053 1.2E-06 60.2 9.5 102 197-314 69-170 (264)
274 PRK05800 cobU adenosylcobinami 95.5 0.021 4.6E-07 58.7 5.7 79 214-302 3-85 (170)
275 KOG0731 AAA+-type ATPase conta 95.5 0.066 1.4E-06 66.1 10.7 182 185-390 308-520 (774)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.077 1.7E-06 53.1 9.6 102 211-337 25-133 (144)
277 PRK15429 formate hydrogenlyase 95.5 0.13 2.9E-06 65.8 14.1 49 187-236 375-423 (686)
278 PF14532 Sigma54_activ_2: Sigm 95.5 0.013 2.7E-07 58.3 3.8 45 191-236 1-45 (138)
279 TIGR02237 recomb_radB DNA repa 95.5 0.037 8.1E-07 59.4 7.8 38 210-247 10-47 (209)
280 PRK07667 uridine kinase; Provi 95.5 0.025 5.4E-07 59.8 6.2 42 197-239 3-44 (193)
281 KOG2228 Origin recognition com 95.5 0.16 3.6E-06 55.8 12.3 174 186-362 22-218 (408)
282 TIGR01420 pilT_fam pilus retra 95.5 0.058 1.2E-06 62.6 9.7 111 212-334 122-233 (343)
283 PRK06067 flagellar accessory p 95.4 0.063 1.4E-06 58.8 9.5 50 197-247 11-60 (234)
284 PRK05703 flhF flagellar biosyn 95.4 0.19 4.2E-06 59.7 14.0 36 212-247 221-258 (424)
285 PRK11608 pspF phage shock prot 95.4 0.06 1.3E-06 62.0 9.4 47 188-235 6-52 (326)
286 cd01394 radB RadB. The archaea 95.3 0.072 1.6E-06 57.7 9.2 50 197-247 5-54 (218)
287 KOG0734 AAA+-type ATPase conta 95.3 0.09 1.9E-06 60.9 9.9 155 187-364 303-485 (752)
288 COG2884 FtsE Predicted ATPase 95.2 0.074 1.6E-06 53.7 7.9 53 284-338 146-204 (223)
289 PRK12724 flagellar biosynthesi 95.2 0.26 5.6E-06 57.4 13.6 25 212-236 223-247 (432)
290 KOG2739 Leucine-rich acidic nu 95.2 0.01 2.3E-07 62.9 2.1 85 718-804 41-129 (260)
291 cd03214 ABC_Iron-Siderophores_ 95.2 0.092 2E-06 54.9 9.3 122 211-337 24-164 (180)
292 cd01393 recA_like RecA is a b 95.1 0.07 1.5E-06 58.1 8.7 49 198-247 6-60 (226)
293 cd03222 ABC_RNaseL_inhibitor T 95.1 0.098 2.1E-06 54.1 9.1 115 211-348 24-146 (177)
294 COG1121 ZnuC ABC-type Mn/Zn tr 95.1 0.099 2.1E-06 56.5 9.3 51 285-337 149-205 (254)
295 TIGR01817 nifA Nif-specific re 95.1 0.27 5.8E-06 61.1 14.6 50 186-236 194-243 (534)
296 PRK12726 flagellar biosynthesi 95.1 0.4 8.7E-06 54.9 14.4 38 210-247 204-241 (407)
297 KOG0743 AAA+-type ATPase [Post 95.1 0.22 4.7E-06 57.4 12.3 151 213-398 236-413 (457)
298 PRK05022 anaerobic nitric oxid 95.1 0.2 4.2E-06 61.7 13.2 51 186-237 185-235 (509)
299 PRK14722 flhF flagellar biosyn 95.1 0.19 4.1E-06 58.1 12.1 37 211-247 136-174 (374)
300 PRK06762 hypothetical protein; 95.1 0.063 1.4E-06 55.2 7.6 25 212-236 2-26 (166)
301 PF07726 AAA_3: ATPase family 95.1 0.017 3.7E-07 55.0 3.0 31 215-245 2-32 (131)
302 PF13604 AAA_30: AAA domain; P 95.1 0.055 1.2E-06 57.3 7.2 114 197-331 7-131 (196)
303 PF01583 APS_kinase: Adenylyls 95.0 0.033 7.2E-07 55.6 5.0 36 212-247 2-37 (156)
304 PF13671 AAA_33: AAA domain; P 95.0 0.12 2.6E-06 51.5 9.3 24 214-237 1-24 (143)
305 PRK10416 signal recognition pa 95.0 0.094 2E-06 59.7 9.3 29 211-239 113-141 (318)
306 PF13238 AAA_18: AAA domain; P 94.9 0.02 4.4E-07 55.9 3.4 22 215-236 1-22 (129)
307 cd03223 ABCD_peroxisomal_ALDP 94.9 0.071 1.5E-06 54.8 7.5 26 211-236 26-51 (166)
308 KOG0733 Nuclear AAA ATPase (VC 94.9 0.18 3.8E-06 59.7 11.1 131 212-364 545-693 (802)
309 COG0464 SpoVK ATPases of the A 94.9 0.085 1.8E-06 64.9 9.4 156 188-365 242-425 (494)
310 KOG1947 Leucine rich repeat pr 94.9 0.0053 1.2E-07 75.6 -1.1 15 835-849 359-373 (482)
311 COG1066 Sms Predicted ATP-depe 94.9 0.092 2E-06 59.5 8.6 97 197-303 79-178 (456)
312 COG2607 Predicted ATPase (AAA+ 94.9 0.2 4.3E-06 52.6 10.3 57 186-242 58-115 (287)
313 KOG2123 Uncharacterized conser 94.8 0.0054 1.2E-07 64.9 -1.1 82 768-852 19-102 (388)
314 TIGR02974 phageshock_pspF psp 94.8 0.45 9.8E-06 54.8 14.4 45 190-235 1-45 (329)
315 PF00485 PRK: Phosphoribulokin 94.8 0.024 5.2E-07 60.0 3.8 26 214-239 1-26 (194)
316 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.2 4.4E-06 51.0 10.4 23 212-234 102-124 (157)
317 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.099 2.1E-06 54.8 8.4 23 214-236 1-23 (183)
318 cd03216 ABC_Carb_Monos_I This 94.8 0.061 1.3E-06 55.1 6.5 117 211-337 25-148 (163)
319 PF00406 ADK: Adenylate kinase 94.8 0.069 1.5E-06 54.0 6.8 20 217-236 1-20 (151)
320 KOG2123 Uncharacterized conser 94.8 0.0026 5.7E-08 67.2 -3.6 95 838-936 19-123 (388)
321 PRK15455 PrkA family serine pr 94.7 0.03 6.6E-07 66.7 4.4 50 187-237 75-128 (644)
322 cd03238 ABC_UvrA The excision 94.7 0.094 2E-06 54.2 7.6 24 211-234 20-43 (176)
323 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.092 2E-06 52.8 7.2 117 213-332 3-139 (159)
324 COG0572 Udk Uridine kinase [Nu 94.7 0.035 7.5E-07 58.2 4.3 30 210-239 6-35 (218)
325 cd03229 ABC_Class3 This class 94.6 0.059 1.3E-06 56.2 6.1 36 211-247 25-60 (178)
326 KOG2739 Leucine-rich acidic nu 94.6 0.012 2.6E-07 62.5 0.8 35 862-896 115-153 (260)
327 TIGR00416 sms DNA repair prote 94.6 0.14 3E-06 61.5 9.9 52 195-247 78-129 (454)
328 KOG0651 26S proteasome regulat 94.6 0.21 4.5E-06 54.4 9.9 30 211-240 165-194 (388)
329 PF07724 AAA_2: AAA domain (Cd 94.5 0.05 1.1E-06 56.0 5.2 35 212-246 3-38 (171)
330 COG4088 Predicted nucleotide k 94.5 0.052 1.1E-06 55.3 5.0 30 213-242 2-31 (261)
331 PTZ00494 tuzin-like protein; P 94.5 2.5 5.4E-05 48.8 18.5 185 166-362 345-543 (664)
332 TIGR01650 PD_CobS cobaltochela 94.5 0.38 8.3E-06 54.2 12.4 51 186-241 43-93 (327)
333 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.1 2.2E-06 53.2 7.3 122 212-347 25-153 (157)
334 COG1124 DppF ABC-type dipeptid 94.5 0.11 2.3E-06 55.0 7.3 24 211-234 32-55 (252)
335 PTZ00301 uridine kinase; Provi 94.4 0.034 7.3E-07 59.2 3.7 29 212-240 3-31 (210)
336 COG1120 FepC ABC-type cobalami 94.4 0.052 1.1E-06 58.9 5.2 54 284-338 147-206 (258)
337 COG1875 NYN ribonuclease and A 94.4 0.19 4.2E-06 55.9 9.4 24 210-233 243-266 (436)
338 PRK11823 DNA repair protein Ra 94.4 0.18 3.9E-06 60.5 10.2 50 197-247 66-115 (446)
339 PRK12727 flagellar biosynthesi 94.4 0.24 5.3E-06 59.1 10.9 29 211-239 349-377 (559)
340 KOG2035 Replication factor C, 94.4 0.63 1.4E-05 49.9 12.6 211 187-415 12-260 (351)
341 cd01135 V_A-ATPase_B V/A-type 94.3 0.12 2.5E-06 56.7 7.6 93 211-307 68-180 (276)
342 COG1136 SalX ABC-type antimicr 94.3 0.18 3.9E-06 53.6 8.8 60 284-348 151-216 (226)
343 KOG1969 DNA replication checkp 94.3 0.093 2E-06 63.3 7.3 77 210-306 324-400 (877)
344 PRK10463 hydrogenase nickel in 94.3 0.1 2.2E-06 57.8 7.2 45 198-245 93-137 (290)
345 cd03115 SRP The signal recogni 94.3 0.29 6.2E-06 50.7 10.4 33 214-246 2-34 (173)
346 cd02019 NK Nucleoside/nucleoti 94.3 0.036 7.7E-07 47.4 2.8 23 214-236 1-23 (69)
347 TIGR02858 spore_III_AA stage I 94.2 0.13 2.9E-06 56.9 7.9 120 210-336 109-234 (270)
348 cd03230 ABC_DR_subfamily_A Thi 94.2 0.14 3E-06 53.1 7.7 119 211-337 25-161 (173)
349 PRK10820 DNA-binding transcrip 94.2 0.5 1.1E-05 58.2 13.7 51 184-235 200-250 (520)
350 COG4618 ArpD ABC-type protease 94.1 0.22 4.9E-06 57.9 9.6 22 213-234 363-384 (580)
351 PRK03839 putative kinase; Prov 94.1 0.037 8E-07 57.8 3.2 25 214-238 2-26 (180)
352 PF00910 RNA_helicase: RNA hel 94.1 0.031 6.8E-07 52.6 2.4 25 215-239 1-25 (107)
353 PRK05480 uridine/cytidine kina 94.1 0.045 9.8E-07 58.8 3.9 27 210-236 4-30 (209)
354 TIGR02012 tigrfam_recA protein 94.1 0.12 2.6E-06 58.4 7.3 51 197-247 40-90 (321)
355 PRK08233 hypothetical protein; 94.0 0.04 8.7E-07 57.7 3.3 26 212-237 3-28 (182)
356 PF00437 T2SE: Type II/IV secr 94.0 0.05 1.1E-06 61.1 4.2 124 189-330 105-231 (270)
357 PRK04040 adenylate kinase; Pro 94.0 0.053 1.2E-06 56.8 4.1 25 213-237 3-27 (188)
358 KOG1970 Checkpoint RAD17-RFC c 94.0 0.15 3.2E-06 59.7 7.9 42 194-236 88-134 (634)
359 PRK12723 flagellar biosynthesi 94.0 0.26 5.7E-06 57.4 10.1 27 211-237 173-199 (388)
360 KOG1051 Chaperone HSP104 and r 94.0 0.34 7.3E-06 61.4 11.6 106 189-307 563-674 (898)
361 cd00983 recA RecA is a bacter 94.0 0.11 2.5E-06 58.6 6.8 50 197-247 40-90 (325)
362 PTZ00088 adenylate kinase 1; P 94.0 0.087 1.9E-06 57.0 5.7 22 215-236 9-30 (229)
363 TIGR00235 udk uridine kinase. 93.9 0.048 1E-06 58.4 3.8 28 210-237 4-31 (207)
364 PRK00625 shikimate kinase; Pro 93.9 0.042 9E-07 56.6 3.1 24 214-237 2-25 (173)
365 cd03283 ABC_MutS-like MutS-lik 93.9 0.29 6.2E-06 51.9 9.6 23 213-235 26-48 (199)
366 PRK06995 flhF flagellar biosyn 93.9 0.72 1.6E-05 55.2 13.7 28 211-238 255-282 (484)
367 COG0563 Adk Adenylate kinase a 93.9 0.11 2.3E-06 53.9 5.9 23 214-236 2-24 (178)
368 KOG0738 AAA+-type ATPase [Post 93.8 0.15 3.2E-06 57.1 7.1 74 161-239 190-272 (491)
369 PF00006 ATP-synt_ab: ATP synt 93.8 0.058 1.3E-06 57.4 4.0 88 212-305 15-117 (215)
370 PRK14723 flhF flagellar biosyn 93.7 0.78 1.7E-05 57.7 14.1 26 212-237 185-210 (767)
371 PF03308 ArgK: ArgK protein; 93.7 0.15 3.3E-06 54.8 6.8 56 197-254 15-70 (266)
372 cd01122 GP4d_helicase GP4d_hel 93.7 0.34 7.4E-06 54.4 10.3 38 210-247 28-66 (271)
373 PF07725 LRR_3: Leucine Rich R 93.7 0.043 9.4E-07 33.5 1.5 20 623-642 1-20 (20)
374 PF08433 KTI12: Chromatin asso 93.7 0.11 2.4E-06 57.7 6.0 27 213-239 2-28 (270)
375 PRK13543 cytochrome c biogenes 93.7 0.22 4.8E-06 53.7 8.3 25 211-235 36-60 (214)
376 cd03237 ABC_RNaseL_inhibitor_d 93.6 0.23 5E-06 54.6 8.4 26 211-236 24-49 (246)
377 cd01125 repA Hexameric Replica 93.6 0.33 7.2E-06 53.3 9.7 24 214-237 3-26 (239)
378 PRK12337 2-phosphoglycerate ki 93.6 0.059 1.3E-06 63.1 3.8 26 211-236 254-279 (475)
379 KOG0729 26S proteasome regulat 93.6 0.075 1.6E-06 55.8 4.2 34 210-248 209-242 (435)
380 KOG0652 26S proteasome regulat 93.6 0.89 1.9E-05 48.0 11.8 165 211-398 204-391 (424)
381 cd03246 ABCC_Protease_Secretio 93.6 0.24 5.1E-06 51.4 8.0 118 211-335 27-160 (173)
382 PF03969 AFG1_ATPase: AFG1-lik 93.5 0.15 3.3E-06 59.0 7.1 103 210-331 60-167 (362)
383 cd01130 VirB11-like_ATPase Typ 93.5 0.1 2.2E-06 54.8 5.3 92 212-312 25-119 (186)
384 PHA02244 ATPase-like protein 93.5 0.15 3.2E-06 58.1 6.8 52 187-239 95-146 (383)
385 PRK00131 aroK shikimate kinase 93.5 0.059 1.3E-06 55.9 3.4 26 212-237 4-29 (175)
386 cd03233 ABC_PDR_domain1 The pl 93.5 0.34 7.4E-06 51.6 9.3 27 211-237 32-58 (202)
387 PRK05973 replicative DNA helic 93.5 0.19 4.1E-06 54.3 7.2 38 210-247 62-99 (237)
388 TIGR03499 FlhF flagellar biosy 93.5 0.2 4.3E-06 56.3 7.8 29 211-239 193-221 (282)
389 PRK08356 hypothetical protein; 93.5 0.29 6.3E-06 51.8 8.7 22 212-233 5-26 (195)
390 COG2274 SunT ABC-type bacterio 93.5 0.25 5.3E-06 62.3 9.2 24 211-234 498-521 (709)
391 cd03247 ABCC_cytochrome_bd The 93.5 0.31 6.7E-06 50.8 8.7 35 211-246 27-61 (178)
392 KOG0062 ATPase component of AB 93.4 0.1 2.2E-06 60.6 5.2 121 212-337 106-261 (582)
393 TIGR02655 circ_KaiC circadian 93.4 0.18 3.9E-06 61.5 7.8 51 196-247 248-298 (484)
394 PRK10923 glnG nitrogen regulat 93.4 0.59 1.3E-05 57.2 12.5 47 188-235 138-184 (469)
395 TIGR02788 VirB11 P-type DNA tr 93.4 0.14 3E-06 58.4 6.5 112 211-332 143-254 (308)
396 TIGR00150 HI0065_YjeE ATPase, 93.4 0.1 2.2E-06 50.8 4.5 39 197-236 8-46 (133)
397 COG1428 Deoxynucleoside kinase 93.4 0.066 1.4E-06 55.4 3.3 26 212-237 4-29 (216)
398 TIGR03600 phage_DnaB phage rep 93.4 1.7 3.8E-05 52.1 16.1 72 189-269 173-245 (421)
399 cd02027 APSK Adenosine 5'-phos 93.3 0.42 9E-06 48.1 9.1 24 214-237 1-24 (149)
400 cd03240 ABC_Rad50 The catalyti 93.3 0.31 6.7E-06 52.0 8.6 21 213-233 23-43 (204)
401 PRK06547 hypothetical protein; 93.3 0.077 1.7E-06 54.7 3.8 27 210-236 13-39 (172)
402 PRK00889 adenylylsulfate kinas 93.3 0.11 2.3E-06 54.1 4.9 36 211-246 3-38 (175)
403 PRK07132 DNA polymerase III su 93.3 6.8 0.00015 44.2 19.5 168 197-394 5-185 (299)
404 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.23 4.9E-06 57.6 8.0 97 212-314 134-233 (358)
405 PF03205 MobB: Molybdopterin g 93.3 0.12 2.6E-06 51.2 4.9 35 213-247 1-36 (140)
406 PRK05439 pantothenate kinase; 93.3 0.12 2.5E-06 58.2 5.4 29 210-238 84-112 (311)
407 PRK09280 F0F1 ATP synthase sub 93.2 0.21 4.5E-06 59.1 7.6 92 211-305 143-250 (463)
408 KOG2004 Mitochondrial ATP-depe 93.2 0.076 1.7E-06 63.8 4.0 53 188-240 411-466 (906)
409 PRK13947 shikimate kinase; Pro 93.2 0.063 1.4E-06 55.6 3.1 26 214-239 3-28 (171)
410 TIGR01360 aden_kin_iso1 adenyl 93.2 0.071 1.5E-06 56.2 3.4 26 211-236 2-27 (188)
411 TIGR00390 hslU ATP-dependent p 93.2 0.12 2.7E-06 59.7 5.5 52 189-240 13-75 (441)
412 cd03228 ABCC_MRP_Like The MRP 93.2 0.34 7.4E-06 50.1 8.4 118 211-336 27-160 (171)
413 TIGR03740 galliderm_ABC gallid 93.1 0.31 6.8E-06 52.9 8.5 25 211-235 25-49 (223)
414 cd03281 ABC_MSH5_euk MutS5 hom 93.1 0.47 1E-05 50.9 9.6 23 212-234 29-51 (213)
415 COG0003 ArsA Predicted ATPase 93.1 0.15 3.1E-06 57.8 5.8 36 212-247 2-37 (322)
416 PRK12597 F0F1 ATP synthase sub 93.1 0.26 5.6E-06 58.5 8.1 91 211-305 142-249 (461)
417 cd02028 UMPK_like Uridine mono 93.0 0.097 2.1E-06 54.5 4.1 26 214-239 1-26 (179)
418 COG0488 Uup ATPase components 93.0 0.22 4.8E-06 60.5 7.6 57 285-349 163-225 (530)
419 cd03285 ABC_MSH2_euk MutS2 hom 93.0 0.11 2.3E-06 56.2 4.5 25 210-234 28-52 (222)
420 PRK03846 adenylylsulfate kinas 93.0 0.12 2.7E-06 54.8 4.9 38 210-247 22-59 (198)
421 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.13 2.8E-06 57.1 5.3 38 210-247 34-71 (259)
422 TIGR00554 panK_bact pantothena 93.0 0.19 4.1E-06 56.2 6.4 28 210-237 60-87 (290)
423 COG0468 RecA RecA/RadA recombi 93.0 0.31 6.7E-06 53.9 8.0 48 200-248 49-96 (279)
424 TIGR02782 TrbB_P P-type conjug 92.9 0.22 4.9E-06 56.3 7.1 88 213-311 133-222 (299)
425 TIGR03574 selen_PSTK L-seryl-t 92.9 0.28 6.1E-06 54.2 7.8 26 214-239 1-26 (249)
426 PF00560 LRR_1: Leucine Rich R 92.9 0.036 7.9E-07 35.2 0.4 20 887-906 1-20 (22)
427 TIGR01069 mutS2 MutS2 family p 92.8 0.34 7.3E-06 62.1 9.3 114 292-415 401-522 (771)
428 cd00227 CPT Chloramphenicol (C 92.8 0.085 1.8E-06 54.8 3.4 25 213-237 3-27 (175)
429 PRK11388 DNA-binding transcrip 92.8 2.1 4.6E-05 54.5 16.6 49 187-236 324-372 (638)
430 CHL00206 ycf2 Ycf2; Provisiona 92.8 0.35 7.6E-06 65.2 9.4 27 211-237 1629-1655(2281)
431 TIGR01039 atpD ATP synthase, F 92.8 0.29 6.3E-06 57.7 7.9 92 211-305 142-249 (461)
432 PF10236 DAP3: Mitochondrial r 92.8 1.5 3.1E-05 50.1 13.5 48 344-391 258-306 (309)
433 PRK08972 fliI flagellum-specif 92.8 0.16 3.6E-06 59.4 5.8 90 211-306 161-265 (444)
434 COG0465 HflB ATP-dependent Zn 92.8 0.33 7.3E-06 58.9 8.6 154 186-364 148-334 (596)
435 PRK05201 hslU ATP-dependent pr 92.7 0.16 3.6E-06 58.7 5.7 51 189-239 16-77 (443)
436 PRK14721 flhF flagellar biosyn 92.7 0.95 2.1E-05 53.3 12.0 26 211-236 190-215 (420)
437 PRK15115 response regulator Gl 92.7 2.2 4.9E-05 51.7 16.0 48 188-236 134-181 (444)
438 COG3640 CooC CO dehydrogenase 92.6 0.17 3.6E-06 53.1 5.0 37 214-250 2-38 (255)
439 COG3910 Predicted ATPase [Gene 92.6 0.85 1.8E-05 46.2 9.6 63 283-349 137-203 (233)
440 COG0467 RAD55 RecA-superfamily 92.5 0.29 6.2E-06 54.6 7.3 38 210-247 21-58 (260)
441 COG5635 Predicted NTPase (NACH 92.5 0.44 9.6E-06 62.2 10.0 227 213-449 223-482 (824)
442 PRK09270 nucleoside triphospha 92.5 0.17 3.6E-06 55.2 5.3 30 210-239 31-60 (229)
443 cd02024 NRK1 Nicotinamide ribo 92.5 0.08 1.7E-06 55.1 2.6 23 214-236 1-23 (187)
444 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.5 0.42 9.1E-06 51.9 8.3 25 211-235 47-71 (224)
445 cd00071 GMPK Guanosine monopho 92.5 0.081 1.8E-06 52.3 2.5 27 214-240 1-27 (137)
446 COG4133 CcmA ABC-type transpor 92.4 0.44 9.4E-06 48.4 7.4 26 212-237 28-53 (209)
447 PRK13949 shikimate kinase; Pro 92.4 0.1 2.2E-06 53.8 3.1 24 214-237 3-26 (169)
448 PF00625 Guanylate_kin: Guanyl 92.4 0.12 2.6E-06 54.1 3.8 36 212-247 2-37 (183)
449 cd02025 PanK Pantothenate kina 92.4 0.087 1.9E-06 56.8 2.8 24 214-237 1-24 (220)
450 COG0055 AtpD F0F1-type ATP syn 92.4 0.28 6.1E-06 54.6 6.6 103 212-317 147-269 (468)
451 PRK14528 adenylate kinase; Pro 92.3 0.34 7.4E-06 50.8 7.1 24 213-236 2-25 (186)
452 PF08423 Rad51: Rad51; InterP 92.3 0.3 6.6E-06 53.9 7.0 50 197-247 24-79 (256)
453 cd03284 ABC_MutS1 MutS1 homolo 92.3 0.55 1.2E-05 50.5 8.8 22 213-234 31-52 (216)
454 cd01123 Rad51_DMC1_radA Rad51_ 92.3 0.29 6.4E-06 53.6 7.0 48 199-247 7-60 (235)
455 cd03217 ABC_FeS_Assembly ABC-t 92.3 0.44 9.5E-06 50.7 8.0 25 211-235 25-49 (200)
456 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.39 8.4E-06 52.6 7.7 49 198-247 8-56 (237)
457 cd02023 UMPK Uridine monophosp 92.3 0.087 1.9E-06 56.0 2.6 23 214-236 1-23 (198)
458 PRK00279 adk adenylate kinase; 92.2 0.29 6.3E-06 52.7 6.7 23 214-236 2-24 (215)
459 cd01132 F1_ATPase_alpha F1 ATP 92.2 0.26 5.6E-06 54.1 6.2 91 211-306 68-174 (274)
460 PF03266 NTPase_1: NTPase; In 92.2 0.16 3.5E-06 52.0 4.4 24 215-238 2-25 (168)
461 PRK13948 shikimate kinase; Pro 92.2 0.12 2.5E-06 53.8 3.3 29 210-238 8-36 (182)
462 COG1102 Cmk Cytidylate kinase 92.2 0.11 2.3E-06 51.1 2.8 26 214-239 2-27 (179)
463 KOG3928 Mitochondrial ribosome 92.2 2.1 4.6E-05 48.8 13.1 54 342-398 403-460 (461)
464 PRK06217 hypothetical protein; 92.2 0.098 2.1E-06 54.8 2.8 24 214-237 3-26 (183)
465 PRK08506 replicative DNA helic 92.2 0.96 2.1E-05 54.8 11.6 72 189-269 171-242 (472)
466 PRK11174 cysteine/glutathione 92.1 0.28 6E-06 62.0 7.3 34 211-246 375-408 (588)
467 cd03215 ABC_Carb_Monos_II This 92.1 0.51 1.1E-05 49.4 8.1 26 211-236 25-50 (182)
468 PRK10751 molybdopterin-guanine 92.1 0.21 4.6E-06 51.1 4.9 29 211-239 5-33 (173)
469 PRK13765 ATP-dependent proteas 92.1 0.19 4.1E-06 62.5 5.4 79 182-271 25-104 (637)
470 PF00158 Sigma54_activat: Sigm 92.0 0.15 3.3E-06 52.2 4.0 45 190-235 1-45 (168)
471 cd02020 CMPK Cytidine monophos 92.0 0.11 2.3E-06 52.1 2.8 23 214-236 1-23 (147)
472 cd00464 SK Shikimate kinase (S 92.0 0.12 2.6E-06 52.4 3.1 22 215-236 2-23 (154)
473 cd03232 ABC_PDR_domain2 The pl 92.0 0.57 1.2E-05 49.5 8.4 25 211-235 32-56 (192)
474 TIGR02322 phosphon_PhnN phosph 92.0 0.12 2.6E-06 54.0 3.1 25 213-237 2-26 (179)
475 cd03287 ABC_MSH3_euk MutS3 hom 91.9 0.97 2.1E-05 48.7 10.1 24 211-234 30-53 (222)
476 cd01857 HSR1_MMR1 HSR1/MMR1. 91.9 1.4 2.9E-05 43.9 10.6 51 57-109 3-53 (141)
477 PF02374 ArsA_ATPase: Anion-tr 91.9 0.22 4.7E-06 56.6 5.3 35 213-247 2-36 (305)
478 PRK13946 shikimate kinase; Pro 91.9 0.12 2.6E-06 54.2 3.0 26 212-237 10-35 (184)
479 KOG1532 GTPase XAB1, interacts 91.9 0.14 3E-06 54.5 3.3 40 210-250 17-56 (366)
480 COG2842 Uncharacterized ATPase 91.9 1.2 2.7E-05 48.7 10.7 142 162-316 46-190 (297)
481 COG1703 ArgK Putative periplas 91.9 0.27 5.9E-06 53.6 5.6 54 199-254 39-92 (323)
482 smart00534 MUTSac ATPase domai 91.8 0.19 4.2E-06 52.7 4.5 21 214-234 1-21 (185)
483 PRK14529 adenylate kinase; Pro 91.8 0.59 1.3E-05 50.2 8.2 90 215-311 3-95 (223)
484 KOG4308 LRR-containing protein 91.7 0.0042 9.1E-08 74.4 -9.0 132 792-923 145-304 (478)
485 KOG0736 Peroxisome assembly fa 91.7 2.5 5.4E-05 51.9 13.9 195 163-384 647-875 (953)
486 cd02021 GntK Gluconate kinase 91.7 0.12 2.5E-06 52.2 2.6 23 214-236 1-23 (150)
487 CHL00059 atpA ATP synthase CF1 91.7 0.5 1.1E-05 56.0 8.1 88 211-305 140-245 (485)
488 TIGR02915 PEP_resp_reg putativ 91.7 1 2.3E-05 54.6 11.4 47 188-235 139-185 (445)
489 PRK14526 adenylate kinase; Pro 91.7 0.24 5.2E-06 52.9 5.1 22 215-236 3-24 (211)
490 TIGR02533 type_II_gspE general 91.7 0.24 5.3E-06 59.9 5.8 121 191-330 224-345 (486)
491 cd04121 Rab40 Rab40 subfamily. 91.7 0.7 1.5E-05 48.6 8.5 22 213-234 7-28 (189)
492 PRK08927 fliI flagellum-specif 91.6 0.34 7.3E-06 57.1 6.6 89 211-305 157-260 (442)
493 PRK12339 2-phosphoglycerate ki 91.6 0.15 3.2E-06 53.8 3.4 25 212-236 3-27 (197)
494 COG3854 SpoIIIAA ncharacterize 91.6 0.65 1.4E-05 48.4 7.7 111 211-330 136-252 (308)
495 PF12775 AAA_7: P-loop contain 91.6 0.2 4.3E-06 55.9 4.5 26 212-237 33-58 (272)
496 PF06068 TIP49: TIP49 C-termin 91.6 0.27 5.9E-06 55.5 5.5 60 186-246 22-84 (398)
497 COG1936 Predicted nucleotide k 91.6 0.12 2.7E-06 51.5 2.6 20 214-233 2-21 (180)
498 PRK05057 aroK shikimate kinase 91.6 0.14 3E-06 52.9 3.1 26 212-237 4-29 (172)
499 COG0194 Gmk Guanylate kinase [ 91.6 0.18 3.9E-06 51.2 3.7 25 212-236 4-28 (191)
500 PRK14493 putative bifunctional 91.6 0.21 4.5E-06 55.6 4.6 34 213-247 2-35 (274)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-143 Score=1419.94 Aligned_cols=1054 Identities=34% Similarity=0.574 Sum_probs=867.8
Q ss_pred CCCCCC--CCCcccEEEccccccCCCchHHHHHHHHhhcCCcceEecCCCCCCCCCchHHHHHHhhccceEEEEeccCcc
Q 000780 1 MASSSS--SSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYA 78 (1288)
Q Consensus 1 m~~s~~--~~~~~dvfis~~~~d~r~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~ 78 (1288)
||+||| +.|+||||+||||+|||++|++|||++| +++||++|+|++ +++|+.|++++.+||++||++|||||++||
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l-~~~~i~~f~d~~-~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKEL-DRKLIIAFKDNE-IERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHH-HHCCCeEEccCC-ccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 676654 7899999999999999999999999999 999999999985 999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhcCCcEEEEEEeecCCccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHhccccCCCCCcc
Q 000780 79 SSKWCLHELLKILECKKMKGQIIIPVFYGVSPSDVRHQNGTFGDGFDELKKQFQDKPEMVLKWRDALTETSHLAGHESAK 158 (1288)
Q Consensus 79 ~s~wcl~El~~i~~~~~~~~~~v~Pvfy~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 158 (1288)
+|+|||+||++|++|++.++++|+||||+|||+|||+|+|+||+||++++++ ...+++++||+||++||+++|| +..
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~-~~~ 155 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGY-HSQ 155 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCce-ecC
Confidence 9999999999999999999999999999999999999999999999998875 4678999999999999999999 665
Q ss_pred C-CChHHHHHHHHHHHHHhccccccccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 159 F-RHDAQLVNKIVEDVLKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 159 ~-~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
. ++|+++|++||++|+++++. +++.+.+++|||+.+++++.++|..+. +++++|+|||||||||||||+++|+++.
T Consensus 156 ~~~~E~~~i~~Iv~~v~~~l~~--~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 156 NWPNEAKMIEEIANDVLGKLNL--TPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred CCCCHHHHHHHHHHHHHHhhcc--ccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 4 89999999999999999988 788888999999999999999998766 7899999999999999999999999999
Q ss_pred cccceeEEeeec--cccc---c-----cCCChHHHHHHHHhhhcCc-cccccCCCchhHHHHHHhcceEEEEeccCCChH
Q 000780 238 HEFEGSCFVSDV--RGNS---E-----TAGGLEHLQKQMLSTTLSE-KLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG 306 (1288)
Q Consensus 238 ~~F~~~~~~~~~--~~~~---~-----~~~~l~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~ 306 (1288)
.+|++.+|+.+. +... . .......++++++.++... ..... ....++++++++|+||||||||+.+
T Consensus 233 ~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~krvLLVLDdv~~~~ 309 (1153)
T PLN03210 233 RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKHRKVLIFIDDLDDQD 309 (1153)
T ss_pred hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhCCeEEEEEeCCCCHH
Confidence 999999998642 1110 0 0011235666666663322 11111 1256889999999999999999999
Q ss_pred HHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcC
Q 000780 307 QLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKG 386 (1288)
Q Consensus 307 ~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 386 (1288)
+|+.+.+...|+++||+||||||+++++..++ ..++|+|+.|+++||++||+++||++..+++++.+++++|+++|+|
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~--~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHFLRAHG--IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHHHHhcC--CCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 99999998899999999999999999998776 6789999999999999999999999888888899999999999999
Q ss_pred CchhHHHHhhhcCCCCHHHHHHHhhhhhhcCccchhhHHHHHHhhhcCCCh-hhHHHhhhcccccCCCChhHHHHHhhhh
Q 000780 387 NPLVLEVLGSSLCLKRKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTP-RVKSIFLDIACFFEGEDKDFVASILDDS 465 (1288)
Q Consensus 387 lPLal~~lg~~L~~~~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~~~l~~~ 465 (1288)
+||||+++|+.|++++..+|+.+++++++.++.++ .++|++||++|++ .+|.||++|||||.+.+.+.+..+++++
T Consensus 388 LPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I---~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~ 464 (1153)
T PLN03210 388 LPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKI---EKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANS 464 (1153)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHH---HHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999988766555 9999999999976 5999999999999999999999988876
Q ss_pred ---hhhhhHHhhcCcCeeEeCCEEEecHHHHHHHHHHhhccccCCCCCcccccChhhhhhhhccCCcccccccccccccc
Q 000780 466 ---ESDVLDILIDKSLVSISGNFLNMHDILQEMGRQIVRQESEKEPGKRSRLWDPKEISRVLKHNKGTDAIEGIFLDLSK 542 (1288)
Q Consensus 466 ---~~~~l~~L~~~sLi~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~rl~~~~di~~~l~~~~~~~~v~~i~ldls~ 542 (1288)
+..+++.|+++|||+...++++|||++|+||++++++++ .+|++|+|+|+++|++.++..++|+..+++|++|+++
T Consensus 465 ~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 465 DLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred CCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 667899999999999999999999999999999999997 7899999999999999999999999999999999999
Q ss_pred ccccccCchhhcCCCCCcEEEEeCCcccccccCCCCchhhhccccccccCCCCCCCCCCcceEEeCCCCCCCCCCCCCCC
Q 000780 543 IKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPK 622 (1288)
Q Consensus 543 ~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~i~~l~~l~~l~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~ 622 (1288)
.....+...+|.+|++|++|+++.+.+.. ......++|.++..+|.+||+|+|.+|+++++|..|.+.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~------------~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~ 611 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQ------------KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPE 611 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccc------------cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCcc
Confidence 99899999999999999999998764211 112345789999999999999999999999999999999
Q ss_pred CceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCcEEEecCCcCCcccCCcccCceee
Q 000780 623 NLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRL 702 (1288)
Q Consensus 623 ~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~L~L~~~~~l~~~p~~~~~L~~L 702 (1288)
+|++|+|++|+++.+|.+ +..+++|+.|+|++|..++.+|....+++|+.|++++|..+
T Consensus 612 ~L~~L~L~~s~l~~L~~~--------~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L------------- 670 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDG--------VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL------------- 670 (1153)
T ss_pred CCcEEECcCccccccccc--------cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-------------
Confidence 999999999999998655 45799999999999988998887667778888888887554
Q ss_pred cCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccccCcc
Q 000780 703 YLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITE 782 (1288)
Q Consensus 703 ~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~ 782 (1288)
..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.. ..+|+.|++++|.+..
T Consensus 671 -------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 671 -------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE 739 (1153)
T ss_pred -------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc
Confidence 4566778889999999999999999999876 8999999999999988888865 4678999999999999
Q ss_pred cCcccCCCCCCcEEEeccCCCCC-------CCCCcCCCCchHHHHhhcccC-CccCCcccccCCCCcEEEcCCCCCCCcc
Q 000780 783 LPSSFENLPGLEVLFVEDCSKLD-------NLPDNIGSLEYLYYILAAASA-ISQLPSSVALSNMLRSLDSSHCKGLESF 854 (1288)
Q Consensus 783 lp~~l~~l~~L~~L~L~~~~~~~-------~lp~~l~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~L~~~~~~~~~ 854 (1288)
+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|. +..+|.+++.+++|+.|++++|..++.+
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 99876 68889999888754321 111122335789999999984 5689999999999999999999888888
Q ss_pred ccccccCCCCCcEEEecCCCCC-CCchhhcCCCCCcEEEccCCCCccCchhhhcCCCCCEEEecCCCCCCccCCcC---c
Q 000780 855 PRTFLLGLSAMGLLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP---L 930 (1288)
Q Consensus 855 ~~~~~~~~~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~---~ 930 (1288)
|... .+++|+.|++++|... .+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.+..+|..+ +
T Consensus 819 P~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 819 PTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 7653 6899999999998543 46542 478999999999999999999999999999999999988887533 3
Q ss_pred cccEEEeeCCCCCCccCCCCCCcceeeccCCCCcCCCCCCCCCCcEEeccCCCCccCCCCCCCcccEEecccccCcCccc
Q 000780 931 CLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLP 1010 (1288)
Q Consensus 931 ~L~~L~l~~c~~l~~~~~~~~~L~~L~Ls~n~~~~~l~~~~~~L~~L~Ls~n~~l~~lp~~~~sL~~L~l~~c~~l~~lp 1010 (1288)
+|+.|++++|..+..++.. +++ . ....+.++. .
T Consensus 894 ~L~~L~l~~C~~L~~~~l~----------~~~------------------------------~--~~~~~~~n~-~---- 926 (1153)
T PLN03210 894 HLETVDFSDCGALTEASWN----------GSP------------------------------S--EVAMATDNI-H---- 926 (1153)
T ss_pred CCCeeecCCCcccccccCC----------CCc------------------------------h--hhhhhcccc-c----
Confidence 4444555555544332210 000 0 000000000 0
Q ss_pred hhhhcCCCcchhhhhhhccCCCCCCcCcccccccccceeccCccccChhhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhh
Q 000780 1011 EILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKANNKILADSLLRIRHMAIASLRLGYEMAINE 1090 (1288)
Q Consensus 1011 ~~l~~L~~L~~l~l~~l~~~~p~l~~~p~~l~~~l~~l~~~nC~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1090 (1288)
. .+| ....+.|.||.+|++++|..- +
T Consensus 927 ------------------~------~~p-----~~~~l~f~nC~~L~~~a~l~~--------~----------------- 952 (1153)
T PLN03210 927 ------------------S------KLP-----STVCINFINCFNLDQEALLQQ--------Q----------------- 952 (1153)
T ss_pred ------------------c------cCC-----chhccccccccCCCchhhhcc--------c-----------------
Confidence 0 011 123468899999998775210 0
Q ss_pred hcccccceEEEecCCCCcCCcccCCCCceEE-EEcCCCCCCCCccceEEEEEeccCCCCCccccccceeeEEEEEEEEcc
Q 000780 1091 KLSELRGSLIVLPGSEIPDWFSNQSSGSSIC-IQLPPHSSCRNLIGFAFCAVLDSKKVDSDCFRYFYVSFQFDLEIKTLS 1169 (1288)
Q Consensus 1091 ~~~~~~~~~~~~pg~~iP~wf~~~~~g~~i~-i~l~~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 1169 (1288)
. ....+++||.+||+||.||+.|+++| |++|++|++..|+||++|+|+++...... ...+.+.|.|++.+
T Consensus 953 ~----~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~-----~~~~~~~~~c~~~~ 1023 (1153)
T PLN03210 953 S----IFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFII-----SVSFDIQVCCRFID 1023 (1153)
T ss_pred c----cceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccC-----CCceeEEEEEEEEC
Confidence 0 12237899999999999999999998 99999999888999999999987764322 23468899998876
Q ss_pred CCCccccccccccccCcccCCeEEEEEEec---------CcccC----CC--CCeeeEEEEEEEeccCceEEEeecceEe
Q 000780 1170 ETKHVDLGYNSRYIEDLIDSDRVILGFKPC---------LNVGF----PD--GYHHTIATFKFFAERKFYKIKRCGLCPV 1234 (1288)
Q Consensus 1170 ~~~~~~~~~~~~~~~~~~~sdHv~l~y~~~---------~~~~~----~~--~~~~~~~sf~f~~~~~~~~vk~CGv~lv 1234 (1288)
..+... ..+.++|+|+.|... ..... .. .|++..+.|+|+.....++||+|||+++
T Consensus 1024 ~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~ 1094 (1153)
T PLN03210 1024 RLGNHF---------DSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLS 1094 (1153)
T ss_pred CCCCcc---------ccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEe
Confidence 533211 012345555444432 11000 11 2344445555555444579999999999
Q ss_pred ecCCCC
Q 000780 1235 YANPSE 1240 (1288)
Q Consensus 1235 y~~~~~ 1240 (1288)
|+.+..
T Consensus 1095 ~~~~~~ 1100 (1153)
T PLN03210 1095 EDDSSL 1100 (1153)
T ss_pred ccCCCc
Confidence 966554
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-57 Score=560.44 Aligned_cols=453 Identities=26% Similarity=0.353 Sum_probs=332.6
Q ss_pred ccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH---hhcccceeEEeeecccccccCCChHHHHHHHH
Q 000780 191 VGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ---FSHEFEGSCFVSDVRGNSETAGGLEHLQKQML 267 (1288)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 267 (1288)
||.+..++++...|..+. .+++||+||||+||||||+.++|+ ++.+|+.++|+.. +.. +....++.+++
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk~-f~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SKE-FTTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----ccc-ccHHhHHHHHH
Confidence 999999999999998754 499999999999999999999993 6789999999973 444 88899999999
Q ss_pred hhhcCccccccC---CCchhHHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhh-hCCccce
Q 000780 268 STTLSEKLEVAG---PNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK-FRGEEKK 343 (1288)
Q Consensus 268 ~~l~~~~~~~~~---~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~-~~~~~~~ 343 (1288)
..++..+..... ...+..+.+.|++||+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++ +..
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~--~~~ 310 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG--VDY 310 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc--CCc
Confidence 987664433322 245577889999999999999999999999999999988899999999999999988 76 688
Q ss_pred EEEcCCCCHHHHHHHHhhhhcCCC-CCCchHHHHHHHHHhhhcCCchhHHHHhhhcCCC-CHHHHHHHhhhhhhcCcc--
Q 000780 344 IYRVNGLEFEEAFEHFCNFAFKEN-HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-RKSHWGKVLHDLNRICES-- 419 (1288)
Q Consensus 344 ~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~~~~-- 419 (1288)
.++++.|+.+|||+||++.+|... ...+...++|++++++|+|+|||++++|+.|+.+ +..+|+.+...+......
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 999999999999999999998753 3334588999999999999999999999999987 677999999988765221
Q ss_pred --chhhHHHHHHhhhcCCChhhHHHhhhcccccCCCChhH--HHH-Hhh--------------hhhhhhhHHhhcCcCee
Q 000780 420 --EIHDIYDILKISFNKLTPRVKSIFLDIACFFEGEDKDF--VAS-ILD--------------DSESDVLDILIDKSLVS 480 (1288)
Q Consensus 420 --~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~--~~~-~l~--------------~~~~~~l~~L~~~sLi~ 480 (1288)
..+.+..+|+.|||.|+++.|.||+|||.||+++.++. +.. |.. +.+..++.+|++++|+.
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 23567999999999999999999999999999998754 222 221 12778899999999998
Q ss_pred EeC-----CEEEecHHHHHHHHHHhhccccCCCCCcccccChhhhhhhhccCCccccccccccccccccccccCchhhcC
Q 000780 481 ISG-----NFLNMHDILQEMGRQIVRQESEKEPGKRSRLWDPKEISRVLKHNKGTDAIEGIFLDLSKIKGINLDPRAFTN 555 (1288)
Q Consensus 481 ~~~-----~~~~mHdll~~~~~~i~~~e~~~~~~~~~rl~~~~di~~~l~~~~~~~~v~~i~ldls~~~~~~~~~~~f~~ 555 (1288)
..+ ..+.|||++|+||.+++.+.+..... . +.....+.
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~---------iv~~~~~~------------------------- 513 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEEN---Q---------IVSDGVGL------------------------- 513 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccc---e---------EEECCcCc-------------------------
Confidence 875 68999999999999999854321110 0 00000000
Q ss_pred CCCCcEEEEeCCcccccccCCCCchhhhccccccccCCCCCCCCCCcceEEeCCCCCCCCCCCCCCCCceEEecCCCc--
Q 000780 556 MSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK-- 633 (1288)
Q Consensus 556 l~~Lr~L~l~~n~~~~i~~l~~l~~l~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~-- 633 (1288)
...|+... ....|...+.+|.+..++.....++|++|-+..|.
T Consensus 514 ---------------------------------~~~~~~~~--~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 514 ---------------------------------SEIPQVKS--WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred ---------------------------------cccccccc--hhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 00111111 03445555555555555555555567777766664
Q ss_pred cccCCCCCccccCcccccccccceecccCccCccccCCCCC-cCCCcEEEecCCcCCcccCCcccCceeecCCCcccccc
Q 000780 634 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLH-FVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEV 712 (1288)
Q Consensus 634 i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~-~~~L~~L~L~~~~~l~~~p~~~~~L~~L~L~~~~l~~l 712 (1288)
+..+ .+..|..++.|++|||++|..+..+|..++ +. +|++|+|+++.+..+
T Consensus 559 l~~i-------s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li---------------------~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 559 LLEI-------SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV---------------------HLRYLDLSDTGISHL 610 (889)
T ss_pred hhhc-------CHHHHhhCcceEEEECCCCCccCcCChHHhhhh---------------------hhhcccccCCCcccc
Confidence 3333 233466677777777777665554443331 11 223444444555566
Q ss_pred CccccccCcccEEEcccCcCccccccccccccccceeeecC
Q 000780 713 PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLG 753 (1288)
Q Consensus 713 p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~ 753 (1288)
|.++++|.+|.+||+..+..+..+|..+..|.+|++|.+..
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66666666666666666555555555444466666666544
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=4.6e-43 Score=344.15 Aligned_cols=159 Identities=36% Similarity=0.571 Sum_probs=146.9
Q ss_pred CCCCCCCCcccEEEccccccCCCchHHHHHHHHhhcCCcceEecCCCCCCCCCchHHHHHHhhccceEEEEeccCcccch
Q 000780 2 ASSSSSSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYASSK 81 (1288)
Q Consensus 2 ~~s~~~~~~~dvfis~~~~d~r~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~ 81 (1288)
+|||+...+|||||||||+|+|++|++||+++| +++||+||+|++++++|+.|.+.|.+||++|+++|||||++||+|.
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL-~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~ 96 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHL-SRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY 96 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHH-HHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence 567778899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCcEEEEEEeecCCcccccc-ccchHHHHHHHHHHhCCChHHHHHHHHHHHhccccCCCCCc--c
Q 000780 82 WCLHELLKILECKKMKGQIIIPVFYGVSPSDVRHQ-NGTFGDGFDELKKQFQDKPEMVLKWRDALTETSHLAGHESA--K 158 (1288)
Q Consensus 82 wcl~El~~i~~~~~~~~~~v~Pvfy~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~--~ 158 (1288)
||++||++|++|+ ++|+||||+|+|+|||+| .|. ...+++++||+||++||+++|+ +. .
T Consensus 97 WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~-~~~~~ 158 (187)
T PLN03194 97 FCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGL-TFDSL 158 (187)
T ss_pred hHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccc-cCCCC
Confidence 9999999999975 479999999999999997 443 2458899999999999999998 44 3
Q ss_pred CCChHHHHHHHHHHHHHhccc
Q 000780 159 FRHDAQLVNKIVEDVLKKLEK 179 (1288)
Q Consensus 159 ~~~e~~~i~~i~~~v~~~l~~ 179 (1288)
+++|+++|++||+.|.++|..
T Consensus 159 ~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 159 KGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.5e-40 Score=436.85 Aligned_cols=512 Identities=19% Similarity=0.217 Sum_probs=308.8
Q ss_pred CCCCcccccChhhhhhhhccCCccccccccccccccccccccCchhhcCCCCCcEEEEeCCcccc-cc-c-CCCCchhhh
Q 000780 507 EPGKRSRLWDPKEISRVLKHNKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYE-IE-K-LPSMSTEEQ 583 (1288)
Q Consensus 507 ~~~~~~rl~~~~di~~~l~~~~~~~~v~~i~ldls~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~-i~-~-l~~l~~l~~ 583 (1288)
+|.++.+.|+..+.+-.....+....-+...+|++.+......+.+|..+++|+.|++++|.+.+ +. . ...+..++.
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~ 122 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCE
Confidence 45556667765432222222222222244556777665555567889999999999999998642 11 0 112333333
Q ss_pred ccccccccCCCCC-CCCCCcceEEeCCCCCC-CCCCCC-CCCCceEEecCCCccccCCCCCccccCcccccccccceecc
Q 000780 584 LSYSKVQLPNGLD-YLPKKLRYLHWDTYPLR-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSF 660 (1288)
Q Consensus 584 ~~~~~~~l~~~~~-~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L 660 (1288)
++.+...+...+. ...++|++|++++|.+. .+|..+ .+.+|++|+|++|.+... +|..++++++|++|+|
T Consensus 123 L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-------IPNSLTNLTSLEFLTL 195 (968)
T ss_pred EECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-------CChhhhhCcCCCeeec
Confidence 3333322211110 11245666666666554 344444 555666666666655443 4555666666666666
Q ss_pred cCccCccccCCCC-CcCCCcEEEecCCcCCcccCCcc---cCceeecCCCcccc-ccCccccccCcccEEEcccCcCccc
Q 000780 661 KGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQIS---GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKR 735 (1288)
Q Consensus 661 ~~~~~l~~lp~~~-~~~~L~~L~L~~~~~l~~~p~~~---~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~~ 735 (1288)
++|...+.+|..+ .+.+|+.|+++++.....+|..+ .+|++|++++|.+. .+|.+++++++|+.|++++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 6655555555544 45566666666554444444322 34455566555554 4555566666666666666655555
Q ss_pred cccccccccccceeeecCccCCCCcchhhhhccccceeecccccCc-ccCcccCCCCCCcEEEeccCCCCCCCCCcCCCC
Q 000780 736 ISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSL 814 (1288)
Q Consensus 736 lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l 814 (1288)
+|..+.++++|++|++++|...+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 5555556666666666666555556666666666666666666554 445555566666666666666665666666666
Q ss_pred chHHHHhhcccCCc-cCCcccccCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCC-CchhhcCCCCCcEEE
Q 000780 815 EYLYYILAAASAIS-QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILY 892 (1288)
Q Consensus 815 ~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~ 892 (1288)
++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.. +|..+..+++|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 66666666666554 44555555566666666666655544432 4456677777777776653 666666777777777
Q ss_pred ccCCCCc-cCchhhhcCCCCCEEEecCCCCCCccCCc--CccccEEEeeCCCCCCccCCC---CCCcceeeccCCCCcCC
Q 000780 893 LSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQSLPEL--PLCLKYLHLIDCKMLQSLPVL---PFCLESLDLTGCNMLRS 966 (1288)
Q Consensus 893 Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~l~~c~~l~~~~~~---~~~L~~L~Ls~n~~~~~ 966 (1288)
+++|+++ .+|..+..+++|+.|++++|...+.+|.. .++|+.|++++|.....+|.. .++|+.|+|++|.+.+.
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence 7777766 34455666777777777777766666643 256777777777665555532 23577788888888777
Q ss_pred CCC---CCCCCcEEeccCCCCccCCCCC---CCcccEEecccccCcCccchhhhcCCCcchhhhhh
Q 000780 967 LPE---LPLCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEK 1026 (1288)
Q Consensus 967 l~~---~~~~L~~L~Ls~n~~l~~lp~~---~~sL~~L~l~~c~~l~~lp~~l~~L~~L~~l~l~~ 1026 (1288)
+|. .+++|+.|+|++|.+.+.+|.. +++|+.|++++|.....+|..+.++++|+.++++.
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 775 3466888888888888877754 46788888888887778888888888888888753
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-37 Score=412.89 Aligned_cols=465 Identities=20% Similarity=0.240 Sum_probs=397.1
Q ss_pred ccccccccc-ccCchhhcCCCCCcEEEEeCCcccccccCCCCchhhhccccccc----cCCCCCCCCCCcceEEeCCCCC
Q 000780 538 LDLSKIKGI-NLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQ----LPNGLDYLPKKLRYLHWDTYPL 612 (1288)
Q Consensus 538 ldls~~~~~-~~~~~~f~~l~~Lr~L~l~~n~~~~i~~l~~l~~l~~~~~~~~~----l~~~~~~l~~~Lr~L~l~~~~l 612 (1288)
+|++.+... .+....|.++++||+|++++|.+.+.-....+..++.++..... +|..+..+ ++|++|++++|.+
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l 176 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVL 176 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCcc
Confidence 566666543 45666777999999999999988754333334445544444333 45555554 7999999999998
Q ss_pred C-CCCCCC-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCC-CcCCCcEEEecCCcCC
Q 000780 613 R-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNL 689 (1288)
Q Consensus 613 ~-~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~L~~~~~l 689 (1288)
. .+|..+ ++++|++|+|++|.+... +|..++++++|++|+|++|...+.+|..+ .+++|++|++++|...
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQ-------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCc-------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 6 678777 899999999999998866 79999999999999999999888888876 7899999999999766
Q ss_pred cccCCcc---cCceeecCCCcccc-ccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhh
Q 000780 690 IEFPQIS---GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILE 765 (1288)
Q Consensus 690 ~~~p~~~---~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 765 (1288)
..+|... .+|++|++++|.+. .+|.++.++++|+.|++++|.+.+.+|..+.++++|+.|++++|...+.+|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 6677544 46799999999886 6889999999999999999999889999999999999999999999999999999
Q ss_pred hccccceeecccccCc-ccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCc-cCCcccccCCCCcEE
Q 000780 766 KMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS-QLPSSVALSNMLRSL 843 (1288)
Q Consensus 766 ~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L 843 (1288)
.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 9999999999999998 78989999999999999999999999999999999999999999887 678889999999999
Q ss_pred EcCCCCCCCccccccccCCCCCcEEEecCCCCCC-CchhhcCCCCCcEEEccCCCCc-cCchhhhcCCCCCEEEecCCCC
Q 000780 844 DSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNM 921 (1288)
Q Consensus 844 ~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~ 921 (1288)
++++|.+.+..|. .+..+++|+.|++++|.+.. +|..+..+++|+.|+|++|++. .+|.. ...++|+.|++++|..
T Consensus 410 ~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 410 RLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQF 487 (968)
T ss_pred ECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCcc
Confidence 9999998877664 36789999999999999986 6777888999999999999987 45544 4568999999999999
Q ss_pred CCccCCc---CccccEEEeeCCCCCCccCCC---CCCcceeeccCCCCcCCCCCC---CCCCcEEeccCCCCccCCCCC-
Q 000780 922 LQSLPEL---PLCLKYLHLIDCKMLQSLPVL---PFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPEL- 991 (1288)
Q Consensus 922 l~~lp~~---~~~L~~L~l~~c~~l~~~~~~---~~~L~~L~Ls~n~~~~~l~~~---~~~L~~L~Ls~n~~l~~lp~~- 991 (1288)
...+|.. .++|+.|++++|.....+|.. ..+|+.|+|++|.+.+.+|.. +++|+.|+|++|++.+.+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 8888854 467999999999887777642 357999999999999999863 567999999999999999975
Q ss_pred --CCcccEEecccccCcCccchh
Q 000780 992 --PLCLQLLTVRNCNRLQSLPEI 1012 (1288)
Q Consensus 992 --~~sL~~L~l~~c~~l~~lp~~ 1012 (1288)
+++|+.|++++|+....+|..
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCc
Confidence 467999999999988889864
No 6
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.2e-34 Score=326.45 Aligned_cols=264 Identities=30% Similarity=0.462 Sum_probs=203.4
Q ss_pred chhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH--hhcccceeEEeeecccccccCCChHHHHHHHHhhh
Q 000780 193 LNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ--FSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT 270 (1288)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 270 (1288)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++ ++.+|+.++|+...+ . .....+.++++..+
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~-~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----N-PSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----c-cccccccccccccc
Confidence 7899999999998866 78999999999999999999999987 889999999987432 2 44478888888887
Q ss_pred cCccccc----cCCCchhHHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEE
Q 000780 271 LSEKLEV----AGPNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYR 346 (1288)
Q Consensus 271 ~~~~~~~----~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~ 346 (1288)
+...... +.......+.+.++++++||||||||+...|+.+...++.+..|++||||||+..++..++. ....|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~-~~~~~~ 153 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG-TDKVIE 153 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHS-CEEEEE
T ss_pred cccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 6664322 12224578889999999999999999999999888877777789999999999998877642 267899
Q ss_pred cCCCCHHHHHHHHhhhhcCCC-CCCchHHHHHHHHHhhhcCCchhHHHHhhhcCCC-CHHHHHHHhhhhhhcCcc---ch
Q 000780 347 VNGLEFEEAFEHFCNFAFKEN-HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-RKSHWGKVLHDLNRICES---EI 421 (1288)
Q Consensus 347 l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~~~~---~~ 421 (1288)
+++|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|+.+++.+...... ..
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998655 2334556679999999999999999999999644 678899998877655421 23
Q ss_pred hhHHHHHHhhhcCCChhhHHHhhhcccccCCCCh--hHHHHHhh
Q 000780 422 HDIYDILKISFNKLTPRVKSIFLDIACFFEGEDK--DFVASILD 463 (1288)
Q Consensus 422 ~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~l~ 463 (1288)
..+..++..||+.|+++.|+||++||+||.++.+ +.+..+|.
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~ 277 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWV 277 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHT
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHH
Confidence 5679999999999999999999999999998774 44555443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=7.5e-30 Score=272.06 Aligned_cols=444 Identities=22% Similarity=0.242 Sum_probs=323.9
Q ss_pred CCCCCcEEEEeCCcccccccCCCCchhhhccccccccCCCCCCCCCCcceEEeCCCCCCCCCCCC-CCCCceEEecCCCc
Q 000780 555 NMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSK 633 (1288)
Q Consensus 555 ~l~~Lr~L~l~~n~~~~i~~l~~l~~l~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~ 633 (1288)
.-..|..|.+++|.+. .+..++..+ ..|.+|.++.|.+..+|+.+ .+..++.|+.++|+
T Consensus 43 ~qv~l~~lils~N~l~-------------------~l~~dl~nL-~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ 102 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-------------------VLREDLKNL-ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK 102 (565)
T ss_pred hhcchhhhhhccCchh-------------------hccHhhhcc-cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch
Confidence 3345667778777542 333444554 57889999999999999887 88899999999999
Q ss_pred cccCCCCCccccCcccccccccceecccCccCccccCCCC-CcCCCcEEEecCCcCCcccCCcccC---ceeecCCCccc
Q 000780 634 VEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQISGK---VTRLYLGQSAI 709 (1288)
Q Consensus 634 i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~L~~~~~l~~~p~~~~~---L~~L~L~~~~l 709 (1288)
+..+ |..++.+.+|+.|+.++|.. ..+|+.+ .+..|..++..++ ++..+|..+.+ +..|++.+|.+
T Consensus 103 ls~l--------p~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l 172 (565)
T KOG0472|consen 103 LSEL--------PEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKL 172 (565)
T ss_pred Hhhc--------cHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccch
Confidence 9885 88999999999999988774 4455544 6667777776665 45566655544 46778889999
Q ss_pred cccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccccCcccCcccC-
Q 000780 710 EEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFE- 788 (1288)
Q Consensus 710 ~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~l~- 788 (1288)
+++|+..-+++.|++||...|- ++.+|+.++.+.+|+-|+|..|. +..+| .|.++..|++|+++.|.|+.+|....
T Consensus 173 ~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 173 KALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred hhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHhhHHHHhc
Confidence 9998888779999999988864 78889999999999999998865 44566 68888999999999999999988755
Q ss_pred CCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCc---------------
Q 000780 789 NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES--------------- 853 (1288)
Q Consensus 789 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~--------------- 853 (1288)
++++|..|++.+|+ +...|..+..+.+|..|++++|.++.+|.+++++ .|+.|.+.||++-+.
T Consensus 250 ~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred ccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 89999999999987 4678888999999999999999999999999999 899999999875211
Q ss_pred -------------------------cccccccCCCCCcEEEecCCCCCCCchhhcCCC---CCcEEEccCCCCccCchhh
Q 000780 854 -------------------------FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLS---SLEILYLSGNNFESLPAII 905 (1288)
Q Consensus 854 -------------------------~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~---~L~~L~Ls~n~l~~lp~~l 905 (1288)
.+.+.....-+.+.|++++-+++.+|+...... -....+++.|++.++|..+
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence 000111223467888888888888887654333 3788899999999888877
Q ss_pred hcCCCCCEEEecCCCCCCccCC---cCccccEEEeeCCCCCCccCCCC---CCcceeeccCCCCcCCCCCCC---CCCcE
Q 000780 906 KQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPVLP---FCLESLDLTGCNMLRSLPELP---LCLQY 976 (1288)
Q Consensus 906 ~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~l~~~~~~~---~~L~~L~Ls~n~~~~~l~~~~---~~L~~ 976 (1288)
..+..+.+.-+..++....+|. .+++|..|++++|. +.++|.-. ..|+.|+|+.|.+ ..+|... ..|+.
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLET 485 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHH
Confidence 7776666655555566655553 34667777777664 44455322 2478888888854 3444432 22333
Q ss_pred EeccCCCCccCCCCC----CCcccEEecccccCcCccchhhhcCCCcchhhhhhhccCCCCCCcC
Q 000780 977 LNLEDCNMLRSLPEL----PLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWA 1037 (1288)
Q Consensus 977 L~Ls~n~~l~~lp~~----~~sL~~L~l~~c~~l~~lp~~l~~L~~L~~l~l~~l~~~~p~l~~~ 1037 (1288)
+-.++|+ .+.++.. +..|..|++.+ +.++.+|..++++++|+.+.+.+....-|.-+.+
T Consensus 486 llas~nq-i~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 486 LLASNNQ-IGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred HHhcccc-ccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccCCCHHHHh
Confidence 3334444 4444432 46788888866 5688888889999988888886666555544333
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-28 Score=274.72 Aligned_cols=333 Identities=20% Similarity=0.298 Sum_probs=194.9
Q ss_pred cccCCCCCCCCCCcceEEeCCCCCCCCCCCC-CCCCceEEecCCCccccCCCCCc-----------------cccCcccc
Q 000780 589 VQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEK-----------------ACVPSSIQ 650 (1288)
Q Consensus 589 ~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~-----------------~~~p~~l~ 650 (1288)
..+|.++... +.+++|.|....+..+|... .+.+|+.|.+.+|++..+..... .-+|..+.
T Consensus 22 ~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 22 DRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred CcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 3444444433 45555555555555555554 45555555555555544310000 01455555
Q ss_pred cccccceecccCccCccccCCCC-CcCCCcEEEecCCcCCcccCCcc----cCceeecCCCccccccCccccccCcccEE
Q 000780 651 NFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQIS----GKVTRLYLGQSAIEEVPSSIECLTDLEVL 725 (1288)
Q Consensus 651 ~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~L~~~~~l~~~p~~~----~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 725 (1288)
+|..|.+|||++|. ++..|..+ .-.++..|+|+++ ++..+|... ..|-.|+|++|++..+|+.+..|.+|++|
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 55566666665544 45555554 3345555555554 333444321 12344555666666666666666666666
Q ss_pred EcccCcCccccccccccccccceeeecCcc-CCCCcchhhhhccccceeecccccCcccCcccCCCCCCcEEEeccCCCC
Q 000780 726 DLRGCKRLKRISTSFCKLRSLVTLILLGCL-NLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 804 (1288)
Q Consensus 726 ~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~-~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~ 804 (1288)
+|++|.+...--..+..+++|+.|.+++.. -+..+|..+..+.+|..++++.|.+..+|..+.++++|+.|+|++|.++
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 666655322111112234555555555532 2345677777777777777777777777777777777777777777654
Q ss_pred CCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCc-cccccccCCCCCcEEEecCCCCCCCchhhc
Q 000780 805 DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES-FPRTFLLGLSAMGLLHISDYAVREIPQEIA 883 (1288)
Q Consensus 805 ~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~ 883 (1288)
. +....+...+|+.|+++.|+++.+|..+..++.|+.|.+.+|.+.-. +|. .++.+..|+.+..++|.+.-+|+.++
T Consensus 259 e-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 259 E-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred e-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccccCchhhh
Confidence 3 23334455677777777777777777777777777777777764322 332 24556667777777777777777777
Q ss_pred CCCCCcEEEccCCCCccCchhhhcCCCCCEEEecCCCCCCccC
Q 000780 884 YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP 926 (1288)
Q Consensus 884 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 926 (1288)
.+..|+.|.|+.|++.++|+.+.-|+.|+.|++..|+.+..-|
T Consensus 337 RC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 7777777777777777777777777777777777777665444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3.5e-28 Score=270.83 Aligned_cols=333 Identities=23% Similarity=0.350 Sum_probs=226.7
Q ss_pred chhhcCCCCCcEEEEeCCccccc-ccCCCCchhhhc-----cccccccCCCCCCCCCCcceEEeCCCCCCCCCCCC-CCC
Q 000780 550 PRAFTNMSNLRLFKFYVPKFYEI-EKLPSMSTEEQL-----SYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPK 622 (1288)
Q Consensus 550 ~~~f~~l~~Lr~L~l~~n~~~~i-~~l~~l~~l~~~-----~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~ 622 (1288)
|+.++.+.+|..|.+.+|++..+ ..+..++.+... +..+.-+|.+++.+ ..|..|+|+.|.++..|... ..+
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AK 126 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAK 126 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc-ccceeeecchhhhhhcchhhhhhc
Confidence 44455555555555555554433 223333222211 11122344444444 45555555555555555544 445
Q ss_pred CceEEecCCCccccCCCCCccccCc-ccccccccceecccCccCccccCCCC-CcCCCcEEEecCCcCCcccCCcccCce
Q 000780 623 NLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQISGKVT 700 (1288)
Q Consensus 623 ~L~~L~L~~n~i~~lw~~~~~~~p~-~l~~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~L~~~~~l~~~p~~~~~L~ 700 (1288)
++..|+||+|+|+.+ |. -|-+|..|-+|||++|. +..+|+.+ .+..| +
T Consensus 127 n~iVLNLS~N~IetI--------Pn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~L---------------------q 176 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETI--------PNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSML---------------------Q 176 (1255)
T ss_pred CcEEEEcccCccccC--------CchHHHhhHhHhhhccccch-hhhcCHHHHHHhhh---------------------h
Confidence 555555555555543 22 23345555555554433 34444333 33333 5
Q ss_pred eecCCCccccccC-ccccccCcccEEEcccCcC-ccccccccccccccceeeecCccCCCCcchhhhhccccceeecccc
Q 000780 701 RLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKR-LKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 778 (1288)
Q Consensus 701 ~L~L~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~-l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~ 778 (1288)
.|.|++|.+..+. ..+..+++|++|.+++.+. +..+|.++..+.+|..++++.| .+..+|+.+.++.+|+.|+|++|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC
Confidence 5555555554211 1233478899999998654 4578999999999999999985 56789999999999999999999
Q ss_pred cCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCc--cCCcccccCCCCcEEEcCCCCCCCcccc
Q 000780 779 PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS--QLPSSVALSNMLRSLDSSHCKGLESFPR 856 (1288)
Q Consensus 779 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~L~~~~~~~~~~~ 856 (1288)
.|+++....+...+|++|+++.|.+ ..+|..+.+|+.|+.|.+.+|++. .+|+.++.+.+|+.+..++|. ++-+|.
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE 333 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE 333 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch
Confidence 9999988888899999999999874 578999999999999999999766 899999999999999999887 444554
Q ss_pred ccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCC-CccCchhhhcCCCCCEEEec
Q 000780 857 TFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNN-FESLPAIIKQMSQLRFIHLE 917 (1288)
Q Consensus 857 ~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~ 917 (1288)
. +..+..|+.|.|+.|.+..+|+.+.-++.|+.|++..|. +.--|..-..-++|..-+|.
T Consensus 334 g-lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 334 G-LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred h-hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 3 678899999999999999999999999999999999994 43333211222455555443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.6e-27 Score=258.82 Aligned_cols=373 Identities=19% Similarity=0.176 Sum_probs=240.6
Q ss_pred ccccccccccccCchhhcCCC--CCcEEEEeCCcccccccCCCCchhhhccccccccCCCCCCCCCCcceEEeCCCCCCC
Q 000780 537 FLDLSKIKGINLDPRAFTNMS--NLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRT 614 (1288)
Q Consensus 537 ~ldls~~~~~~~~~~~f~~l~--~Lr~L~l~~n~~~~i~~l~~l~~l~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~~ 614 (1288)
.+|+++.+.-.++...+.+.- .-++|++++|.+.++. +..+.. .++|+.+++..|.++.
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id------------------~~~f~n-l~nLq~v~l~~N~Lt~ 116 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHID------------------FEFFYN-LPNLQEVNLNKNELTR 116 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCc------------------HHHHhc-CCcceeeeeccchhhh
Confidence 345555444344444444432 3345888777653321 111222 3578888888888888
Q ss_pred CCCCC-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCC--CcCCCcEEEecCCcCCc-
Q 000780 615 LPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL--HFVCPVTINFSYCVNLI- 690 (1288)
Q Consensus 615 lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~--~~~~L~~L~L~~~~~l~- 690 (1288)
+|... ...||+.|+|.+|.|..+ -.+.++-++.|+.|||+.|. +..+|... .-.++++|+|+++.--.
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv-------~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSV-------TSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTL 188 (873)
T ss_pred cccccccccceeEEeeeccccccc-------cHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccccc
Confidence 88777 455788888888888876 45677888888888888765 44444332 33466677776653221
Q ss_pred --ccCCcccCceeecCCCccccccCc-cccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhc
Q 000780 691 --EFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM 767 (1288)
Q Consensus 691 --~~p~~~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 767 (1288)
.-.+.+.+|..|.|+.|+|+.+|. ++.+|++|+.|+|..|.+-..--..|.+|++|+.|.|..|....--...|..|
T Consensus 189 ~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred ccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 111233466777777777777774 34557777777777776433223346677777777777766555444556677
Q ss_pred cccceeecccccCcccC-cccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCc-ccccCCCCcEEEc
Q 000780 768 EHLKRIYSDRTPITELP-SSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS-SVALSNMLRSLDS 845 (1288)
Q Consensus 768 ~~L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~L 845 (1288)
.++++|+|..|++..+. .|+-+|++|+.|+++.|.+...-++...-.++|+.|+|+.|.+..+++ ++..+..|+.|+|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 77777777777777654 356677777777777777776666666777777777777777777654 3566777777777
Q ss_pred CCCCCCCccccccccCCCCCcEEEecCCCCCC-C---chhhcCCCCCcEEEccCCCCccCc-hhhhcCCCCCEEEecCCC
Q 000780 846 SHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-I---PQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFN 920 (1288)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l---p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~ 920 (1288)
++|.+ ..+....+.++++|+.|+|++|.+.- + ...+..+++|++|+|.||++..+| ..+..+++|++|+|.+|.
T Consensus 349 s~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 349 SHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 77763 33444556677777777777777654 2 223566777777778777777777 567777777777777776
Q ss_pred CCCccCCcC--ccccEEEe
Q 000780 921 MLQSLPELP--LCLKYLHL 937 (1288)
Q Consensus 921 ~l~~lp~~~--~~L~~L~l 937 (1288)
+-..-|..+ ..|++|.+
T Consensus 428 iaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 428 IASIQPNAFEPMELKELVM 446 (873)
T ss_pred ceeecccccccchhhhhhh
Confidence 655544332 24555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=6.3e-28 Score=257.46 Aligned_cols=367 Identities=20% Similarity=0.240 Sum_probs=232.6
Q ss_pred ccccccccccccCchhhcCCCCCcEEEEeCCccccc----ccCCCCchhhhccccccccCCCCCCCCCCcceEEeCCCCC
Q 000780 537 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEI----EKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPL 612 (1288)
Q Consensus 537 ~ldls~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~i----~~l~~l~~l~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l 612 (1288)
.++++.+.... ......++..|.+|.+.+|.+..+ ..+..+..+....+....+|..+... .+|+.|+.+.|.+
T Consensus 49 ~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~-~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 49 KLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSL-ISLVKLDCSSNEL 126 (565)
T ss_pred hhhhccCchhh-ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhh-hhhhhhhccccce
Confidence 34555554333 345577888889999998887654 22333333344444455667766666 5788888999999
Q ss_pred CCCCCCC-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCcEEEecCCcCCcc
Q 000780 613 RTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE 691 (1288)
Q Consensus 613 ~~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~L~L~~~~~l~~ 691 (1288)
.++|+.+ .+..|..|+..+|++..+ |..+.++.+|..|++.+|......|..+.++.|+++|...+ .+..
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~sl--------p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~t 197 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSL--------PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLET 197 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccC--------chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhc
Confidence 9888887 788888899999988875 88888899999999988775544445557778888776443 4566
Q ss_pred cCCcccCc---eeecCCCccccccCccccccCcccEEEcccCcCccccccccc-cccccceeeecCccCCCCcchhhhhc
Q 000780 692 FPQISGKV---TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC-KLRSLVTLILLGCLNLEHFPEILEKM 767 (1288)
Q Consensus 692 ~p~~~~~L---~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l 767 (1288)
+|..++.+ +-|+|..|.|..+| +|..+..|+.|.++.|. ++.+|...+ ++.+|..|||.+| .++..|+.+..+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHh
Confidence 77666554 44566788888887 67778888888887765 566776665 7788888888874 466778888888
Q ss_pred cccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCC-------------------------------------CC-
Q 000780 768 EHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNL-------------------------------------PD- 809 (1288)
Q Consensus 768 ~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l-------------------------------------p~- 809 (1288)
.+|.+|++++|.|+.+|.+++++ +|+.|.+.||++-..- |.
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 88888888888888888888888 7888888887632100 00
Q ss_pred ---cCCCCchHHHHhhcccCCccCCcccccCCC---CcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhc
Q 000780 810 ---NIGSLEYLYYILAAASAISQLPSSVALSNM---LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIA 883 (1288)
Q Consensus 810 ---~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~---L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~ 883 (1288)
....+.+.+.|++++-+++.+|..+..... ....+++.|.+. .+|......-.-...+.+++|.+.-+|..++
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~ 432 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELS 432 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHH
Confidence 011233444555555555555554332222 444455555422 1222110000111223444444444555555
Q ss_pred CCCCCcEEEccCCCCccCchhhhcCCCCCEEEecCC
Q 000780 884 YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 919 (1288)
Q Consensus 884 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 919 (1288)
.+++|..|+|++|-+.++|..++.+..|+.|+|+.|
T Consensus 433 ~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred hhhcceeeecccchhhhcchhhhhhhhhheeccccc
Confidence 566666666666666666655555555666666655
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-26 Score=256.41 Aligned_cols=350 Identities=19% Similarity=0.202 Sum_probs=235.1
Q ss_pred ccccccccccccCchhhcCCCCCcEEEEeCCcccccccCCCCch-hhhccccccccCC----CCCCCCCCcceEEeCCCC
Q 000780 537 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMST-EEQLSYSKVQLPN----GLDYLPKKLRYLHWDTYP 611 (1288)
Q Consensus 537 ~ldls~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~i~~l~~l~~-l~~~~~~~~~l~~----~~~~l~~~Lr~L~l~~~~ 611 (1288)
.+|+++++...++...|.++.||+.+++..|.++.|........ ++.+......++. .+..+ +.||.|||+.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l-~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSAL-PALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhH-hhhhhhhhhhch
Confidence 48999999999999999999999999999999888766555443 5555555555543 33333 578999999999
Q ss_pred CCCCCCC-C-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCC-CC-cCCCcEEEecCCc
Q 000780 612 LRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN-LH-FVCPVTINFSYCV 687 (1288)
Q Consensus 612 l~~lp~~-~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~-~~-~~~L~~L~L~~~~ 687 (1288)
+..+|.. | .-.++++|+|++|+|+.+ -...|.++.+|.+|.|+.|. +..+|.. ++ ++.|
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l-------~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L--------- 223 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTL-------ETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKL--------- 223 (873)
T ss_pred hhcccCCCCCCCCCceEEeecccccccc-------ccccccccchheeeecccCc-ccccCHHHhhhcchh---------
Confidence 9988854 4 446899999999999888 45678888889999998876 4444432 22 4444
Q ss_pred CCcccCCcccCceeecCCCcccccc-CccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhh
Q 000780 688 NLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEK 766 (1288)
Q Consensus 688 ~l~~~p~~~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 766 (1288)
+.|+|..|.|..+ -..+..|++|+.|.|..|.+..--...|..|.++++|+|+.|+....-..++.+
T Consensus 224 ------------~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 224 ------------ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred ------------hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 4555555555544 234556666666666666654444445666666666666666555444455666
Q ss_pred ccccceeecccccCccc-CcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcc-cccCCCCcEEE
Q 000780 767 MEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS-VALSNMLRSLD 844 (1288)
Q Consensus 767 l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~ 844 (1288)
+++|+.|++++|.|..+ +++....++|+.|+|++|.+...-+..|..|..|+.|.|++|.+..+... +..+++|+.|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 66666677777766654 33455566677777777666666666666677777777777776665443 45566777777
Q ss_pred cCCCCCCCccccc--cccCCCCCcEEEecCCCCCCCch-hhcCCCCCcEEEccCCCCccCc-hhhhcCCCCCEEEec
Q 000780 845 SSHCKGLESFPRT--FLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLE 917 (1288)
Q Consensus 845 L~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~ 917 (1288)
|++|.+...+... .+.++++|+.|.+.+|++..+|. .+..+++|+.|+|.+|.|.++. ..|..+ .|++|.+.
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 7777655443322 25667777777777777777764 4667777777777777776553 556666 66666554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.2e-23 Score=271.59 Aligned_cols=341 Identities=25% Similarity=0.385 Sum_probs=230.5
Q ss_pred CCCCceEEecCCCccccCCCCCccccCccccccc-ccceecccCccCccccCCCCCcCCCcEEEecCCcCCcccCCcccC
Q 000780 620 KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK-YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGK 698 (1288)
Q Consensus 620 ~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~-~L~~L~L~~~~~l~~lp~~~~~~~L~~L~L~~~~~l~~~p~~~~~ 698 (1288)
++.+|+.|.+.++..... ......+|..+..++ +|+.|.+.++. ++.+|..+...+
T Consensus 556 ~m~~L~~L~~~~~~~~~~-~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~--------------------- 612 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQK-KEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPEN--------------------- 612 (1153)
T ss_pred cCccccEEEEeccccccc-ccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccC---------------------
Confidence 566777777755432210 000112566666654 47888887654 566676554444
Q ss_pred ceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccc
Q 000780 699 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 778 (1288)
Q Consensus 699 L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~ 778 (1288)
|+.|++.++.+..+|..+..+++|+.|+|++|..++.+|. ++.+++|++|+|++|..+..+|..++++++|+.|++++|
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 4445555556667777788889999999998888888886 788999999999999989999999999999999999885
Q ss_pred -cCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccc
Q 000780 779 -PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 857 (1288)
Q Consensus 779 -~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~ 857 (1288)
.++.+|..+ ++++|+.|++++|..++.+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++.... +..
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~- 764 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWE- 764 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-ccc-
Confidence 677888766 7899999999999888877764 356778888888888887765 46777777776654211 000
Q ss_pred cccCCCCCcEEEecCCCCCCC-chhhcCCCCCcEEEccCCC-CccCchhhhcCCCCCEEEecCCCCCCccCCc--Ccccc
Q 000780 858 FLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNN-FESLPAIIKQMSQLRFIHLEDFNMLQSLPEL--PLCLK 933 (1288)
Q Consensus 858 ~~~~~~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~ 933 (1288)
.+..+ |.....+++|+.|+|++|. +..+|..++++++|+.|+|++|..++.+|.. +++|+
T Consensus 765 ----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~ 828 (1153)
T PLN03210 765 ----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE 828 (1153)
T ss_pred ----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccC
Confidence 00011 1112335678888888874 4578888888888888888888887777753 45677
Q ss_pred EEEeeCCCCCCccCCCCCCcceeeccCCCCcCCCCC---CCCCCcEEeccCCCCccCCCCC---CCcccEEecccccCcC
Q 000780 934 YLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQ 1007 (1288)
Q Consensus 934 ~L~l~~c~~l~~~~~~~~~L~~L~Ls~n~~~~~l~~---~~~~L~~L~Ls~n~~l~~lp~~---~~sL~~L~l~~c~~l~ 1007 (1288)
.|++++|..+..+|..+.+|+.|+|++|.+. .+|. .+++|+.|++++|+.++.+|.. +++|+.|++++|.+++
T Consensus 829 ~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 7777777777666666666777777666554 3342 3445666666666666655543 2445555666665544
Q ss_pred c
Q 000780 1008 S 1008 (1288)
Q Consensus 1008 ~ 1008 (1288)
.
T Consensus 908 ~ 908 (1153)
T PLN03210 908 E 908 (1153)
T ss_pred c
Confidence 3
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-25 Score=264.04 Aligned_cols=422 Identities=22% Similarity=0.236 Sum_probs=237.8
Q ss_pred cccccccccccCchhhcCCCCCcEEEEeCCccccc-ccCCCCchhhhcccc---ccccCCCCCCCCCCcceEEeCCCCCC
Q 000780 538 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEI-EKLPSMSTEEQLSYS---KVQLPNGLDYLPKKLRYLHWDTYPLR 613 (1288)
Q Consensus 538 ldls~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~i-~~l~~l~~l~~~~~~---~~~l~~~~~~l~~~Lr~L~l~~~~l~ 613 (1288)
++++.+..+..+-+...+.-+|+.|++++|.+... ..+..+..|..+... ...+|...... ++|++|.|.+|.+.
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~-~~l~~lnL~~n~l~ 104 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM-RNLQYLNLKNNRLQ 104 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh-hcchhheeccchhh
Confidence 33444433333344445555688888888875432 111112222222111 11222222221 45555555555555
Q ss_pred CCCCCC-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCcEEEecCCcCCccc
Q 000780 614 TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEF 692 (1288)
Q Consensus 614 ~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~L~L~~~~~l~~~ 692 (1288)
.+|..+ .+++|++|++++|++... |..+..+..+..+..++|..+..++... .+.+++..+.....+
T Consensus 105 ~lP~~~~~lknl~~LdlS~N~f~~~--------Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSFNHFGPI--------PLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cCchhHHhhhcccccccchhccCCC--------chhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhhcccch
Confidence 555555 555555555555555442 5555555555555555553333232221 445555555444455
Q ss_pred CCcccCcee-ecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccc
Q 000780 693 PQISGKVTR-LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLK 771 (1288)
Q Consensus 693 p~~~~~L~~-L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 771 (1288)
+.....++. |+|..|.+. .-.+.++.+|+.|....|.+.. +- -.-++|+.|+.+.|......+. ..-.+|+
T Consensus 173 ~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l~---~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~ 244 (1081)
T KOG0618|consen 173 LIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-LE---ISGPSLTALYADHNPLTTLDVH--PVPLNLQ 244 (1081)
T ss_pred hcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccce-EE---ecCcchheeeeccCcceeeccc--cccccce
Confidence 555555554 666666665 2234555666666666554221 11 1446777888887776643322 2235789
Q ss_pred eeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCC
Q 000780 772 RIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL 851 (1288)
Q Consensus 772 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~ 851 (1288)
+++++.|.+..+|+|++.+.+|+.|...+|.+ ..+|..+...++|+.|.+..|.+..+|+....+++|++|+|..|.+
T Consensus 245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L- 322 (1081)
T KOG0618|consen 245 YLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL- 322 (1081)
T ss_pred eeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-
Confidence 99999999999999999999999999999887 6778888889999999999999999999999999999999999884
Q ss_pred CccccccccC-------------------------CCCCcEEEecCCCCCC-CchhhcCCCCCcEEEccCCCCccCc-hh
Q 000780 852 ESFPRTFLLG-------------------------LSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLP-AI 904 (1288)
Q Consensus 852 ~~~~~~~~~~-------------------------~~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~ 904 (1288)
.++|...+.. ++.|+.|.+.+|.+++ .-+.+.++.+|+.|+|++|++.++| ..
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 3344333222 3345555555555554 2223455566666666666666666 34
Q ss_pred hhcCCCCCEEEecCCCCCCccCCc---CccccEEEeeCCCCCCccCCC--CCCcceeeccCCCCcC-CCCC-CC-CCCcE
Q 000780 905 IKQMSQLRFIHLEDFNMLQSLPEL---PLCLKYLHLIDCKMLQSLPVL--PFCLESLDLTGCNMLR-SLPE-LP-LCLQY 976 (1288)
Q Consensus 905 l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~l~~c~~l~~~~~~--~~~L~~L~Ls~n~~~~-~l~~-~~-~~L~~ 976 (1288)
+.++..|++|+|++|. ++.+|.. ...|+.|.+.+|. +..+|.. .+.|+.+|+|.|++.. .+|. .+ ++|++
T Consensus 403 ~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred HhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 5566666666666643 3334421 2344455444433 2233321 2345555555555432 2222 22 34555
Q ss_pred EeccCCCC
Q 000780 977 LNLEDCNM 984 (1288)
Q Consensus 977 L~Ls~n~~ 984 (1288)
||+++|..
T Consensus 481 LdlSGN~~ 488 (1081)
T KOG0618|consen 481 LDLSGNTR 488 (1081)
T ss_pred eeccCCcc
Confidence 55555543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=8.1e-23 Score=240.43 Aligned_cols=378 Identities=21% Similarity=0.253 Sum_probs=276.0
Q ss_pred ccccCchhhcCCCCCcEEEEeCCcccccccC-CCCchhhhccccccccCCCCCCCCCCcceEEeCCCCCC-CCCCCC-CC
Q 000780 545 GINLDPRAFTNMSNLRLFKFYVPKFYEIEKL-PSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-TLPSNF-KP 621 (1288)
Q Consensus 545 ~~~~~~~~f~~l~~Lr~L~l~~n~~~~i~~l-~~l~~l~~~~~~~~~l~~~~~~l~~~Lr~L~l~~~~l~-~lp~~~-~l 621 (1288)
.....|..+..+++|++|+++.|.|..+... ..+..+......+......+... .++.+++..+.+. .++... .+
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT--SIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc--cchhhhhhhhhcccchhcchhhh
Confidence 3455678888999999999999988765322 22222222222221111111111 2566666666654 444444 44
Q ss_pred CCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCcEEEecCCcCCcccCCc-ccCce
Q 000780 622 KNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQI-SGKVT 700 (1288)
Q Consensus 622 ~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~L~L~~~~~l~~~p~~-~~~L~ 700 (1288)
.+ .|+|++|.+..+ .+..+.+|+.|....|.... + .+..++|+.|+.++|......+.. ..+++
T Consensus 180 ~~--~ldLr~N~~~~~----------dls~~~~l~~l~c~rn~ls~-l--~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~ 244 (1081)
T KOG0618|consen 180 TH--QLDLRYNEMEVL----------DLSNLANLEVLHCERNQLSE-L--EISGPSLTALYADHNPLTTLDVHPVPLNLQ 244 (1081)
T ss_pred he--eeecccchhhhh----------hhhhccchhhhhhhhcccce-E--EecCcchheeeeccCcceeeccccccccce
Confidence 55 699999998743 56678888888776655322 1 124567888888888777555543 34779
Q ss_pred eecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccccC
Q 000780 701 RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPI 780 (1288)
Q Consensus 701 ~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i 780 (1288)
+++++.|.+..+|++++.+.+|+.|+..+|.+ ..+|..+....+|+.|.+..| .++.+|...+.+++|++|++..|.+
T Consensus 245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 245 YLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccc
Confidence 99999999999999999999999999999875 778888888999999999885 4677888888899999999999999
Q ss_pred cccCcccCCC-C-CCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCc-cCCcccccCCCCcEEEcCCCCCCCccccc
Q 000780 781 TELPSSFENL-P-GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS-QLPSSVALSNMLRSLDSSHCKGLESFPRT 857 (1288)
Q Consensus 781 ~~lp~~l~~l-~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~ 857 (1288)
..+|..+-.- . +|..|+.+.|++.......-..++.|+.|++.+|.++ ..-+.+.++..|+.|+|++|. +..+|..
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas 401 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPAS 401 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHH
Confidence 9998853222 2 3566666665543322222345778999999999888 455667788899999999998 5668888
Q ss_pred cccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhhhcCCCCCEEEecCCCCCC-ccC-CcC-ccccE
Q 000780 858 FLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQ-SLP-ELP-LCLKY 934 (1288)
Q Consensus 858 ~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp-~~~-~~L~~ 934 (1288)
.+..++.|++|+||+|.++.+|..+..+..|+.|...+|++..+| .+..++.|+.+|++.|+... .+| ..| ++|++
T Consensus 402 ~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 888999999999999999999999999999999999999999999 68889999999998876543 233 244 68888
Q ss_pred EEeeCCCCC
Q 000780 935 LHLIDCKML 943 (1288)
Q Consensus 935 L~l~~c~~l 943 (1288)
|++++|+.+
T Consensus 481 LdlSGN~~l 489 (1081)
T KOG0618|consen 481 LDLSGNTRL 489 (1081)
T ss_pred eeccCCccc
Confidence 888888753
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.80 E-value=7.7e-21 Score=189.91 Aligned_cols=133 Identities=35% Similarity=0.601 Sum_probs=117.3
Q ss_pred EEEccccccCCCchHHHHHHHHhhcC--CcceEecCCCCCCCCCchHHHHHHhhccceEEEEeccCcccchhhHHHHHHH
Q 000780 13 VFLNFRGEDTRTSFTCHLYDNLYERK--KIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLHELLKI 90 (1288)
Q Consensus 13 vfis~~~~d~r~~~~~~l~~~l~~~~--g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wcl~El~~i 90 (1288)
|||||++.|++..|+++|..+| ++. |+++|++++|+.+|..+.+++.++|++||++|+|+|++|++|.||+.|+..|
T Consensus 1 vfisy~~~~d~~~~~~~L~~~L-e~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPEL-EERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHH-HCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHH-HhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 8999999555688999999999 999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC--cEEEEEEeecCCcccc-ccccchHHHHHHHHHHhCCC--hHHHHHHHHHHH
Q 000780 91 LECKKMKG--QIIIPVFYGVSPSDVR-HQNGTFGDGFDELKKQFQDK--PEMVLKWRDALT 146 (1288)
Q Consensus 91 ~~~~~~~~--~~v~Pvfy~v~p~~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 146 (1288)
+++....+ ++|+||||+|.+++|+ ++.+.|+.++..+....... ......|++++.
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 99996655 8999999999999999 79999999988776655443 467889998864
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.9e-18 Score=210.68 Aligned_cols=263 Identities=21% Similarity=0.240 Sum_probs=166.3
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCc
Q 000780 600 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 679 (1288)
Q Consensus 600 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~ 679 (1288)
..-..|+++++.++++|..+. .+|+.|++++|+++.+ |. .+++|++|+|++|. ++.+|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~L--------P~---lp~~Lk~LdLs~N~-LtsLP~-------- 259 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSL--------PA---LPPELRTLEVSGNQ-LTSLPV-------- 259 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCC--------CC---CCCCCcEEEecCCc-cCcccC--------
Confidence 445678999999999998763 4899999999998875 43 24677788887763 444543
Q ss_pred EEEecCCcCCcccCCcccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCC
Q 000780 680 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 759 (1288)
Q Consensus 680 ~L~L~~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~ 759 (1288)
...+|+.|++++|.+..+|.. ..+|+.|++++|. +..+|. .+++|+.|++++|... .
T Consensus 260 ---------------lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~-~ 316 (788)
T PRK15387 260 ---------------LPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLA-S 316 (788)
T ss_pred ---------------cccccceeeccCCchhhhhhc---hhhcCEEECcCCc-cccccc---cccccceeECCCCccc-c
Confidence 223344444444444444432 1334445555544 223333 1244555555554322 2
Q ss_pred cchhhhhccccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCC
Q 000780 760 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 839 (1288)
Q Consensus 760 ~p~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~ 839 (1288)
+|.. ..+|+.|++++|.++.+|.. ..+|+.|+|++|.+.. +|.. ..+|+.|++++|.+..+|.. ..+
T Consensus 317 Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~ 383 (788)
T PRK15387 317 LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSG 383 (788)
T ss_pred CCCC---cccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccc
Confidence 3321 12355556666666655541 2356666666665443 4432 23556667777777776653 346
Q ss_pred CcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhhhcCCCCCEEEecCC
Q 000780 840 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 919 (1288)
Q Consensus 840 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 919 (1288)
|+.|++++|.+.. +|. ..++|+.|++++|.+..+|.. +.+|+.|++++|+++.+|..+.++++|+.|+|++|
T Consensus 384 L~~LdLs~N~Lt~-LP~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTS-LPV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccC-CCC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 8888888887553 442 236788999999998888863 45788899999999999988999999999999999
Q ss_pred CCCCccCC
Q 000780 920 NMLQSLPE 927 (1288)
Q Consensus 920 ~~l~~lp~ 927 (1288)
+.....+.
T Consensus 456 ~Ls~~~~~ 463 (788)
T PRK15387 456 PLSERTLQ 463 (788)
T ss_pred CCCchHHH
Confidence 87765543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=3.6e-18 Score=209.82 Aligned_cols=255 Identities=27% Similarity=0.365 Sum_probs=124.1
Q ss_pred EEEecCCcCCcccCCc-ccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCC
Q 000780 680 TINFSYCVNLIEFPQI-SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 758 (1288)
Q Consensus 680 ~L~L~~~~~l~~~p~~-~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~ 758 (1288)
.|+++++ .+..+|.. ..+++.|++.+|.++.+|.. +++|++|+|++|. +..+|.. .++|+.|++++|. +.
T Consensus 205 ~LdLs~~-~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~ 275 (788)
T PRK15387 205 VLNVGES-GLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LT 275 (788)
T ss_pred EEEcCCC-CCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hh
Confidence 4555555 44455542 23455666666666655532 3555666666554 2334431 2455555555543 22
Q ss_pred CcchhhhhccccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCC
Q 000780 759 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 838 (1288)
Q Consensus 759 ~~p~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~ 838 (1288)
.+|..+ ++|+.|++++|.++.+|.. +++|+.|++++|.+.+ +|.. ..+|+.|++++|.+..+|.
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~------ 339 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLPT------ 339 (788)
T ss_pred hhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccccc------
Confidence 333321 3455555555555555542 2445555555554332 2221 1123334444444443332
Q ss_pred CCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhhhcCCCCCEEEecC
Q 000780 839 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 918 (1288)
Q Consensus 839 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 918 (1288)
...+|+.|++++|.+..+|.. .++|+.|++++|+++.+|.. .++|+.|++++
T Consensus 340 ----------------------lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 340 ----------------------LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSG 391 (788)
T ss_pred ----------------------cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecC
Confidence 112455555555555555431 23455555555555555532 23455555555
Q ss_pred CCCCCccCCcCccccEEEeeCCCCCCccCCCCCCcceeeccCCCCcCCCCC---CCCCCcEEeccCCCCccCCCC
Q 000780 919 FNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPE 990 (1288)
Q Consensus 919 ~~~l~~lp~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~Ls~n~~~~~l~~---~~~~L~~L~Ls~n~~l~~lp~ 990 (1288)
|.. ..+|..+++|+.|++++|. +..+|..+.+|+.|++++|++. .+|. .+++|+.|+|++|++.+..+.
T Consensus 392 N~L-t~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 392 NRL-TSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Ccc-cCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 433 2355445555555555554 3345544445666666666554 3443 234566666666666655443
No 19
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.75 E-value=4.5e-18 Score=170.70 Aligned_cols=136 Identities=36% Similarity=0.649 Sum_probs=115.1
Q ss_pred cccEEEcccc-ccCCCchHHHHHHHHhhcCCcceEecCCCCCCCCCchHHHHHHhhccceEEEEeccCcccchhhHHHHH
Q 000780 10 NYEVFLNFRG-EDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLHELL 88 (1288)
Q Consensus 10 ~~dvfis~~~-~d~r~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wcl~El~ 88 (1288)
.|||||||++ +|+++.|+.+|..+| ...|+.+|.|++ ...|.. ..+|.++|++|+++|+|+|++|..|.||..|+.
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l-~~~~~~v~~d~~-~~~~~~-~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~ 77 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKL-RGYGLCVFIDDF-EPGGGD-LEEIDEAIEKSRIAIVVLSPNYAESEWCLDELV 77 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHh-hcCCcEEEecCc-ccccch-HHHHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence 5999999999 567789999999999 999999999976 333333 339999999999999999999999999999999
Q ss_pred HHHHHhhc-CCcEEEEEEeecCCccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHhcc
Q 000780 89 KILECKKM-KGQIIIPVFYGVSPSDVRHQNGTFGDGFDELKKQFQDKPEMVLKWRDALTETS 149 (1288)
Q Consensus 89 ~i~~~~~~-~~~~v~Pvfy~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 149 (1288)
.++++... ...+|+||+|+..|+++..+.+.++.++.....+..+...+ +.|+.++..++
T Consensus 78 ~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 78 AALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 99988754 56899999999999999999999999998874444333333 68999887654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.3e-17 Score=200.13 Aligned_cols=247 Identities=24% Similarity=0.360 Sum_probs=152.0
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCc
Q 000780 600 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 679 (1288)
Q Consensus 600 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~ 679 (1288)
.+...|+++++.++++|..+ +++|+.|+|++|+|+.+ |..+. ++|+.|++++|. ++.+|..+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsL--------P~~l~--~nL~~L~Ls~N~-LtsLP~~l------ 239 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSL--------PENLQ--GNIKTLYANSNQ-LTSIPATL------ 239 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcC--------Chhhc--cCCCEEECCCCc-cccCChhh------
Confidence 46678999999999998765 45789999999988875 44443 477788877664 44444321
Q ss_pred EEEecCCcCCcccCCcccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCC
Q 000780 680 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 759 (1288)
Q Consensus 680 ~L~L~~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~ 759 (1288)
..+|+.|+|++|.+..+|..+. .+|+.|++++|++ ..+|..+. ++|+.|++++|.. ..
T Consensus 240 ----------------~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~L-t~ 297 (754)
T PRK15370 240 ----------------PDTIQEMELSINRITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSI-RT 297 (754)
T ss_pred ----------------hccccEEECcCCccCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCcc-cc
Confidence 1245666666666666666553 4677777776653 35565442 3566666666533 23
Q ss_pred cchhhhhccccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCC
Q 000780 760 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 839 (1288)
Q Consensus 760 ~p~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~ 839 (1288)
+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++ |.++.+|..+. ++
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~------------------------N~Lt~LP~~l~--~s 347 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGE------------------------NALTSLPASLP--PE 347 (754)
T ss_pred Ccccch--hhHHHHHhcCCccccCCcccc--ccceeccccC------------------------CccccCChhhc--Cc
Confidence 443322 345666666666665554321 3444444444 44444444332 46
Q ss_pred CcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhh----hcCCCCCEEE
Q 000780 840 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII----KQMSQLRFIH 915 (1288)
Q Consensus 840 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~ 915 (1288)
|+.|++++|.+. .+|... .++|+.|++++|.+..+|..+. .+|+.|++++|+++.+|..+ +.++++..|+
T Consensus 348 L~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 677777776643 333321 3567788888888877777653 36888888888888777544 3346777788
Q ss_pred ecCCCCC
Q 000780 916 LEDFNML 922 (1288)
Q Consensus 916 L~~~~~l 922 (1288)
+.+|+..
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 8777654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=5.5e-16 Score=192.37 Aligned_cols=223 Identities=19% Similarity=0.335 Sum_probs=165.6
Q ss_pred EEEecCCcCCcccCC-cccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCC
Q 000780 680 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 758 (1288)
Q Consensus 680 ~L~L~~~~~l~~~p~-~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~ 758 (1288)
.|+++++ .+..+|. ....++.|+|++|.|+.+|..+. ++|+.|++++|. +..+|..+. .+|+.|+|++|...
T Consensus 182 ~L~L~~~-~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 182 ELRLKIL-GLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred EEEeCCC-CcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccC-
Confidence 4555543 3445554 34567888898899999987764 589999999887 456776553 47999999998754
Q ss_pred CcchhhhhccccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCC
Q 000780 759 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 838 (1288)
Q Consensus 759 ~~p~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~ 838 (1288)
.+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. +
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~ 325 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLP--P 325 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcccc--c
Confidence 6776654 589999999999999988664 58999999999765 4565443 479999999999998876543 6
Q ss_pred CCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhhhcCCCCCEEEecC
Q 000780 839 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 918 (1288)
Q Consensus 839 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 918 (1288)
+|+.|++++|.+.. +|... .++|+.|++++|.+..+|..+ .++|+.|+|++|+++.+|..+. .+|+.|++++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASL---PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASR 397 (754)
T ss_pred cceeccccCCcccc-CChhh---cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence 88888888887543 44322 367888888888888888755 3688888888888888886654 3678888888
Q ss_pred CCCCCccCC
Q 000780 919 FNMLQSLPE 927 (1288)
Q Consensus 919 ~~~l~~lp~ 927 (1288)
|+.. .+|.
T Consensus 398 N~L~-~LP~ 405 (754)
T PRK15370 398 NNLV-RLPE 405 (754)
T ss_pred CCcc-cCch
Confidence 7543 5553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=9.8e-18 Score=180.16 Aligned_cols=138 Identities=18% Similarity=0.254 Sum_probs=87.3
Q ss_pred cCCCCCCCCCCcceEEeCCCCCCCCCCC-C-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccc
Q 000780 591 LPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS 668 (1288)
Q Consensus 591 l~~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~ 668 (1288)
+.+....+|.+-..++|+.|.|+++|+. | .+++|+.|||++|.|+.+ -|..|..++.|..|-+.+++.++
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcCCchh-
Confidence 3334445677888899999999999865 4 788999999999999888 78888888777776666644343
Q ss_pred cCCCCCcCCCcEEEecCCcCCcccCCcccCceeecCCCccccccCc-cccccCcccEEEcccCcCccccccccccccccc
Q 000780 669 FPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLV 747 (1288)
Q Consensus 669 lp~~~~~~~L~~L~L~~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~ 747 (1288)
.+|. .++.|..|+.|.+.-|+..-.....|..+++|.
T Consensus 130 ------------------------------------------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 130 ------------------------------------------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred ------------------------------------------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 4442 355666666666666654444444455555555
Q ss_pred eeeecCccCCCCcch-hhhhccccceeeccccc
Q 000780 748 TLILLGCLNLEHFPE-ILEKMEHLKRIYSDRTP 779 (1288)
Q Consensus 748 ~L~L~~~~~~~~~p~-~l~~l~~L~~L~l~~~~ 779 (1288)
.|.+.+|.. ..++. .+..+..++.+.+..|.
T Consensus 168 lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 168 LLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 555555332 22222 34445555555544443
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-16 Score=152.56 Aligned_cols=172 Identities=27% Similarity=0.407 Sum_probs=145.2
Q ss_pred CCCCCCCCCCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCcEEEecCCcCCcc
Q 000780 612 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE 691 (1288)
Q Consensus 612 l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~L~L~~~~~l~~ 691 (1288)
+..+|..|++.+...|.|++|+++.+ |+.+..+.+|+.|++++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~v--------ppnia~l~nlevln~~n----------------------------- 65 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVV--------PPNIAELKNLEVLNLSN----------------------------- 65 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeec--------CCcHHHhhhhhhhhccc-----------------------------
Confidence 34567778888888899999988774 77788777777777654
Q ss_pred cCCcccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCC-Ccchhhhhcccc
Q 000780 692 FPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE-HFPEILEKMEHL 770 (1288)
Q Consensus 692 ~p~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L 770 (1288)
|.|+++|.+++.+++|+.|++.-|+ +..+|..|+.++.|+.|+|..|+..+ .+|..|..|+.|
T Consensus 66 ---------------nqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 66 ---------------NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred ---------------chhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 4566778888888899999988766 67788889999999999998876554 578889999999
Q ss_pred ceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccC
Q 000780 771 KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS 837 (1288)
Q Consensus 771 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l 837 (1288)
+.|+++.|.++.+|..++++++|+.|.+.+|.++ .+|..++.+..|++|.+.+|.++.+|+.++.+
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 9999999999999999999999999999998865 57899999999999999999999999887654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=171.06 Aligned_cols=259 Identities=17% Similarity=0.153 Sum_probs=154.0
Q ss_pred cccccccccccccCchhhcCCCCCcEEEEeCCccccc-----ccCCCCchhhhcc-ccccccCCCCCCCCCCcceEEeCC
Q 000780 536 IFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEI-----EKLPSMSTEEQLS-YSKVQLPNGLDYLPKKLRYLHWDT 609 (1288)
Q Consensus 536 i~ldls~~~~~~~~~~~f~~l~~Lr~L~l~~n~~~~i-----~~l~~l~~l~~~~-~~~~~l~~~~~~l~~~Lr~L~l~~ 609 (1288)
..+++..+.+..+.+.+|+.+++||.|++++|.++.| .+++.+..+.... +....+|.+.+.-...|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4466777788889999999999999999999998877 4455555555444 445556776666666777777777
Q ss_pred CCCCCCCCCC--CCCCceEEecCCCccccCCCCCccccCc-ccccccccceecccCccCcc--ccC----------CCC-
Q 000780 610 YPLRTLPSNF--KPKNLVELNLRCSKVEQPWEGEKACVPS-SIQNFKYLSALSFKGCQSLR--SFP----------SNL- 673 (1288)
Q Consensus 610 ~~l~~lp~~~--~l~~L~~L~L~~n~i~~lw~~~~~~~p~-~l~~l~~L~~L~L~~~~~l~--~lp----------~~~- 673 (1288)
|.+..++... .+++|..|.+..|.++.+ +. +|..+..++.+.+..|...- .+| ...
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i--------~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSI--------CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhh--------ccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 7777766543 677777777777777765 33 56677777777776665221 011 000
Q ss_pred CcCCCcEEEecCCcCCcccC--CcccCc----eeecCCCccccccC-ccccccCcccEEEcccCcCcccccccccccccc
Q 000780 674 HFVCPVTINFSYCVNLIEFP--QISGKV----TRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL 746 (1288)
Q Consensus 674 ~~~~L~~L~L~~~~~l~~~p--~~~~~L----~~L~L~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L 746 (1288)
++.......+.+- ....++ .+...+ ..+...++.....| ..|..|++|+.|+|++|++...-+.+|..+.+|
T Consensus 222 garc~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 222 GARCVSPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred cceecchHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 0000000000000 000000 000000 11111222222223 235667777777777777766666777777777
Q ss_pred ceeeecCccCCCCcchhhhhccccceeecccccCccc-CcccCCCCCCcEEEeccCCC
Q 000780 747 VTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSK 803 (1288)
Q Consensus 747 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~ 803 (1288)
++|.|..|+.-..-...|.++..|+.|++++|+|+.+ |..|..+.+|.+|++-.|++
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 7777777654443344566777777777777777744 55566777777777766654
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-15 Score=145.00 Aligned_cols=160 Identities=26% Similarity=0.417 Sum_probs=108.9
Q ss_pred ceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccc
Q 000780 699 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 778 (1288)
Q Consensus 699 L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~ 778 (1288)
++.|.|++|.++.+|+.|..+.+|+.|++++|+ +..+ |..+..+++|+.|+++-|
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~l------------------------p~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEEL------------------------PTSISSLPKLRILNVGMN 89 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhc------------------------Chhhhhchhhhheecchh
Confidence 344555555555555555555555555555443 3344 444455555555555556
Q ss_pred cCcccCcccCCCCCCcEEEeccCCCC-CCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccc
Q 000780 779 PITELPSSFENLPGLEVLFVEDCSKL-DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 857 (1288)
Q Consensus 779 ~i~~lp~~l~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~ 857 (1288)
++..+|..|+.++.|+.|++..|.+. ..+|..|-.++.|+.|++++|.+..+|..++.+++|+.|.+..|
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--------- 160 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--------- 160 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---------
Confidence 66667777778888888888777765 56888888899999999999999888888777666666655544
Q ss_pred cccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhhhcC
Q 000780 858 FLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQM 908 (1288)
Q Consensus 858 ~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l 908 (1288)
.+.++|..++.+..|++|++.+|+++-+|+.++++
T Consensus 161 ----------------dll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 161 ----------------DLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ----------------chhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 45556777788888888888888888888666543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=1.7e-14 Score=167.27 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=52.0
Q ss_pred cCccccccCcccEEEcccCcCccccccccccccc---cceeeecCccCCC----Ccchhhhhc-cccceeecccccCc--
Q 000780 712 VPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRS---LVTLILLGCLNLE----HFPEILEKM-EHLKRIYSDRTPIT-- 781 (1288)
Q Consensus 712 lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~i~-- 781 (1288)
++..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 3444555667777777776655444444444444 7777777665442 122334444 56666666666655
Q ss_pred ---ccCcccCCCCCCcEEEeccCCCC
Q 000780 782 ---ELPSSFENLPGLEVLFVEDCSKL 804 (1288)
Q Consensus 782 ---~lp~~l~~l~~L~~L~L~~~~~~ 804 (1288)
.++..+..+++|+.|++++|.+.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 23334555566666666666544
No 27
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.36 E-value=2.8e-13 Score=127.36 Aligned_cols=87 Identities=33% Similarity=0.608 Sum_probs=75.1
Q ss_pred EEEccccccCCCchHHHHHHHHhhcCCcceEecCCCCCCCCCchHHHHHHhhccceEEEEeccCcccchhhHHHHHHHHH
Q 000780 13 VFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLHELLKILE 92 (1288)
Q Consensus 13 vfis~~~~d~r~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~s~wcl~El~~i~~ 92 (1288)
|||||+++| +.|+.+|++.| ++.|+++|+|. ++..|+.+.+.|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L-~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~ 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERL-ESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHH-HHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred eEEEecCCc--HHHHHHHHHHH-hhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence 899999999 77999999999 99999999997 799999999999999999999999999999999999999998833
Q ss_pred HhhcCCcEEEEEEee
Q 000780 93 CKKMKGQIIIPVFYG 107 (1288)
Q Consensus 93 ~~~~~~~~v~Pvfy~ 107 (1288)
.+..|+||..+
T Consensus 77 ----~~~~iipv~~~ 87 (102)
T PF13676_consen 77 ----RGKPIIPVRLD 87 (102)
T ss_dssp ----TSESEEEEECS
T ss_pred ----CCCEEEEEEEC
Confidence 44579999843
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=7.7e-14 Score=161.78 Aligned_cols=151 Identities=18% Similarity=0.128 Sum_probs=88.2
Q ss_pred ceeecCCCcccc-----ccCccccccCcccEEEcccCcCc------cccccccccccccceeeecCccCCCCcchhhhhc
Q 000780 699 VTRLYLGQSAIE-----EVPSSIECLTDLEVLDLRGCKRL------KRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM 767 (1288)
Q Consensus 699 L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~Ls~~~~l------~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l 767 (1288)
+++|+++++.++ .++..+...++|+.|+++++... ..++..+.++++|+.|++++|......+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 566666655552 45556667777888888877644 2233456667788888888877766666666655
Q ss_pred cc---cceeecccccCc-----ccCcccCCC-CCCcEEEeccCCCCCC----CCCcCCCCchHHHHhhcccCCc-----c
Q 000780 768 EH---LKRIYSDRTPIT-----ELPSSFENL-PGLEVLFVEDCSKLDN----LPDNIGSLEYLYYILAAASAIS-----Q 829 (1288)
Q Consensus 768 ~~---L~~L~l~~~~i~-----~lp~~l~~l-~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~~~l~-----~ 829 (1288)
.+ |++|++++|.+. .+...+..+ ++|+.|++++|.+.+. ++..+..+++|+.|++++|.+. .
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 55 888888877765 223344555 7777777777776532 2223334444555555555444 1
Q ss_pred CCcccccCCCCcEEEcCCCC
Q 000780 830 LPSSVALSNMLRSLDSSHCK 849 (1288)
Q Consensus 830 lp~~l~~l~~L~~L~L~~~~ 849 (1288)
++..+..+++|+.|++++|.
T Consensus 185 l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHhCCCCCEEeccCCc
Confidence 22223333445555555544
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=8.2e-11 Score=156.66 Aligned_cols=297 Identities=14% Similarity=0.154 Sum_probs=182.3
Q ss_pred cccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 182 VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 182 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
.+|.....+|-|..-++.+.. . ...+++.|.|++|.||||++..+..+. ..++|+. +.... .+...
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~----~--~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~ 73 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG----A--NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESD---NQPER 73 (903)
T ss_pred CCCCCccccCcchHHHHHHhc----c--cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHH
Confidence 456677789989866665532 1 457899999999999999999988542 3577874 33221 23333
Q ss_pred HHHHHHhhhcCcccc----c------cC-CCchhHHH---HHHh--cceEEEEeccCCChH--HHH-HHHhccCCCCCCc
Q 000780 262 LQKQMLSTTLSEKLE----V------AG-PNIPHFTK---ERVR--RMKLLIVLDDVNEVG--QLK-RLIGELDQFGQGS 322 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~----~------~~-~~~~~~l~---~~l~--~k~~LlVLDdv~~~~--~~~-~l~~~l~~~~~gs 322 (1288)
+...++..+...... . .+ ......+. ..+. +.+++|||||+...+ .+. .+...+....++.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 444444443211100 0 00 11111222 2222 678999999996542 122 2222222234677
Q ss_pred EEEEEcCChhHHh--hhCCccceEEEcC----CCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHhh
Q 000780 323 RIVVTTRDKRVLE--KFRGEEKKIYRVN----GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGS 396 (1288)
Q Consensus 323 rIivTTR~~~v~~--~~~~~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 396 (1288)
++|||||...-.. .+.. .....++. +|+.+|+.++|....... --.+.+.++.+.++|+|+++..++.
T Consensus 154 ~lv~~sR~~~~~~~~~l~~-~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRV-RDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred EEEEEeCCCCCCchHhHHh-cCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHH
Confidence 8889999842111 1100 12345566 999999999998654221 1223468899999999999999887
Q ss_pred hcCCCCHHHHHHHhhhhhhcCccchhhHHHHHHh-hhcCCChhhHHHhhhcccccCCCChhHHHHHhhhh-hhhhhHHhh
Q 000780 397 SLCLKRKSHWGKVLHDLNRICESEIHDIYDILKI-SFNKLTPRVKSIFLDIACFFEGEDKDFVASILDDS-ESDVLDILI 474 (1288)
Q Consensus 397 ~L~~~~~~~w~~~l~~l~~~~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~-~~~~l~~L~ 474 (1288)
.+...... -......+....... +.+.+.- .++.||++.+.+++..|+++ .+..+....+.+.. ....++.|.
T Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~ 302 (903)
T PRK04841 228 SARQNNSS-LHDSARRLAGINASH---LSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELE 302 (903)
T ss_pred HHhhCCCc-hhhhhHhhcCCCchh---HHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHH
Confidence 76543210 011111111111122 3554433 37899999999999999986 66666666665543 778899999
Q ss_pred cCcCeeE-e---CCEEEecHHHHHHHHHHhhcc
Q 000780 475 DKSLVSI-S---GNFLNMHDILQEMGRQIVRQE 503 (1288)
Q Consensus 475 ~~sLi~~-~---~~~~~mHdll~~~~~~i~~~e 503 (1288)
+.+++.. . +..|++|++++++.+.....+
T Consensus 303 ~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 303 RQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9999653 2 237999999999999887543
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=4.6e-12 Score=160.14 Aligned_cols=245 Identities=25% Similarity=0.306 Sum_probs=144.0
Q ss_pred CceeecCCCccccccCccccccCcccEEEcccCcC-ccccccc-cccccccceeeecCccCCCCcchhhhhccccceeec
Q 000780 698 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR-LKRISTS-FCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYS 775 (1288)
Q Consensus 698 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~-l~~lp~~-l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 775 (1288)
..+...+-+|.+..++.+..+ ++|++|-+.+|.. +..++.. |..++.|+.|||++|...+.+|+.++++-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 446666666777766655543 3688888887762 4444443 667888899999888888888998988999999999
Q ss_pred ccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccC---CcccccCCCCcEEEcCCCCCCC
Q 000780 776 DRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL---PSSVALSNMLRSLDSSHCKGLE 852 (1288)
Q Consensus 776 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~L~~~~~~~ 852 (1288)
+++.+..+|.++++|..|.+|++..+.....+|.....|++|++|.+.......- -..+..+.+|+.|.......
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-- 680 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-- 680 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--
Confidence 9999989998888888999998888887777777777788888887766542211 12233444444444433221
Q ss_pred ccccccccCCCCC----cEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCch-hh-----h-cCCCCCEEEecCCCC
Q 000780 853 SFPRTFLLGLSAM----GLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-II-----K-QMSQLRFIHLEDFNM 921 (1288)
Q Consensus 853 ~~~~~~~~~~~~L----~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l-----~-~l~~L~~L~L~~~~~ 921 (1288)
.+. ..+..+..| +.+.+.++.....+..+..+.+|+.|.+.+|.+.+... +. . .++++..+.+.+|..
T Consensus 681 ~~~-e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 681 LLL-EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HhH-hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 000 001111211 12222233333344455556666666666665543221 00 0 122334444444444
Q ss_pred CCccC--CcCccccEEEeeCCCCCCcc
Q 000780 922 LQSLP--ELPLCLKYLHLIDCKMLQSL 946 (1288)
Q Consensus 922 l~~lp--~~~~~L~~L~l~~c~~l~~~ 946 (1288)
...+. ..+++|+.|.+..|..++.+
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ccccchhhccCcccEEEEecccccccC
Confidence 33332 23455555555555555443
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=1.1e-08 Score=122.16 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=161.9
Q ss_pred CCCCCcccchhhHHHHHHhhccC-CCCCceEEEEEecCCchHHHHHHHHHHHhhccc--ceeEEeeecccccccCCChHH
Q 000780 185 DSSNGLVGLNSRIEQIKPFLCMD-SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
..++.++||+.++++|...+... .+.....+.|+|++|+|||++++.+++.+.... -..+++. ... . .+...
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~---~-~~~~~ 101 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQI---D-RTRYA 101 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCc---C-CCHHH
Confidence 35678999999999999988542 113446678999999999999999999876654 2234443 211 1 34556
Q ss_pred HHHHHHhhhcCccccccC---CCchhHHHHHHh--cceEEEEeccCCChH------HHHHHHhccCCCCCCcE--EEEEc
Q 000780 262 LQKQMLSTTLSEKLEVAG---PNIPHFTKERVR--RMKLLIVLDDVNEVG------QLKRLIGELDQFGQGSR--IVVTT 328 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~---~~~~~~l~~~l~--~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gsr--IivTT 328 (1288)
+..+++.++........+ .++...+.+.+. +++++||||+++... .+..+...... .++++ +|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEE
Confidence 777777776542222111 112244445554 346899999997643 34555443222 23333 56666
Q ss_pred CChhHHhhhC-----CccceEEEcCCCCHHHHHHHHhhhhcC---CCCCC-chHHHHHHHHHhhhcCCchhHHHHhhhc-
Q 000780 329 RDKRVLEKFR-----GEEKKIYRVNGLEFEEAFEHFCNFAFK---ENHCP-EDLNWHSRSVVSYTKGNPLVLEVLGSSL- 398 (1288)
Q Consensus 329 R~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~-~~~~~l~~~i~~~~~GlPLal~~lg~~L- 398 (1288)
.+..+..... ......+.+++++.++..+++..++-. ..... +..+.+++......|..+.|+.++-...
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5544332211 002346789999999999999876522 22222 2223333333333455777777664322
Q ss_pred ----CCC---CHHHHHHHhhhhhhcCccchhhHHHHHHhhhcCCChhhHHHhhhcccccC----CCChhHHH----HHhh
Q 000780 399 ----CLK---RKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRVKSIFLDIACFFE----GEDKDFVA----SILD 463 (1288)
Q Consensus 399 ----~~~---~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~~~----~~l~ 463 (1288)
.+. +.+....++.... .....-.+..||.++|.++..++...+ ......+. .+.+
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 111 3445555444331 223344678999999988887774432 12222221 1111
Q ss_pred ---------hhhhhhhHHhhcCcCeeEe
Q 000780 464 ---------DSESDVLDILIDKSLVSIS 482 (1288)
Q Consensus 464 ---------~~~~~~l~~L~~~sLi~~~ 482 (1288)
.....+++.|.+.|+|...
T Consensus 331 ~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1145678889999998764
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=1.4e-09 Score=124.83 Aligned_cols=271 Identities=17% Similarity=0.151 Sum_probs=151.2
Q ss_pred CCcccchhhHHHHHHhhccCC--CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMDS--SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQ 265 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 265 (1288)
.+|||++..+++|..++.... ....+.+.++|++|+|||+||+.+++.....+. +...... .....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHHH-
Confidence 469999999999998886421 133556889999999999999999998754421 1111000 11111111
Q ss_pred HHhhhcCccc-cccC-----CCchhHHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhCC
Q 000780 266 MLSTTLSEKL-EVAG-----PNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRG 339 (1288)
Q Consensus 266 ll~~l~~~~~-~~~~-----~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~ 339 (1288)
.+..+..... -+|. ....+.+...+.+.+..+|+|+..+..++... ..+..-|.+|||...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111111100 0000 00112333344444455555554443332211 1234556667776544333211
Q ss_pred ccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHhhhcCCCCHHHHHHHhh-hhhhcCc
Q 000780 340 EEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLH-DLNRICE 418 (1288)
Q Consensus 340 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~-~l~~~~~ 418 (1288)
.....+++++++.+|..+++.+.+..... .-..+....|++.++|.|-.+..++..+ |..+.. .-.....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINR 219 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCH
Confidence 12346899999999999999987753222 1224557889999999997665554422 211100 0011111
Q ss_pred cchhhHHHHHHhhhcCCChhhHHHhh-hcccccC-CCChhHHHHHhhhh---hhhhhH-HhhcCcCeeEe
Q 000780 419 SEIHDIYDILKISFNKLTPRVKSIFL-DIACFFE-GEDKDFVASILDDS---ESDVLD-ILIDKSLVSIS 482 (1288)
Q Consensus 419 ~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~-~~~~~~~~~~l~~~---~~~~l~-~L~~~sLi~~~ 482 (1288)
..+......+...|.++++.++..+. .++.+.. +...+.+...+... ....++ .|++++||...
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 12222344467778899999888777 4455543 35556666666544 666677 69999999654
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=3.7e-11 Score=135.84 Aligned_cols=212 Identities=25% Similarity=0.387 Sum_probs=141.1
Q ss_pred ecCCCccccccCccc--cccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeeccccc
Q 000780 702 LYLGQSAIEEVPSSI--ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTP 779 (1288)
Q Consensus 702 L~L~~~~l~~lp~~i--~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 779 (1288)
|.|++..++++|..- -.+..-...||+.|+ ...+|..++.+..|+.|.|..|. +..+|..+.++..|.+|+++.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch
Confidence 334444444444221 223444456666655 34566666666677776666643 44566777777777777777777
Q ss_pred CcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccccc
Q 000780 780 ITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFL 859 (1288)
Q Consensus 780 i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 859 (1288)
+..+|..++.|+ |+.|-+++|+ ++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|.... +|....
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHh
Confidence 777777776666 7777776654 4567777777778888888888888888888777777777777776433 333222
Q ss_pred cCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCchhhh---cCCCCCEEEecCCC
Q 000780 860 LGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIK---QMSQLRFIHLEDFN 920 (1288)
Q Consensus 860 ~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~---~l~~L~~L~L~~~~ 920 (1288)
.-.|..||+++|++..||..|..|..|++|-|.+|.+++-|..+. ...-.++|++.-|.
T Consensus 210 --~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 210 --SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred --CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 234677888888888888888888888888888888887776553 33445677777664
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.03 E-value=5.1e-10 Score=123.30 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=102.0
Q ss_pred cccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH------H
Q 000780 190 LVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL------Q 263 (1288)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l------~ 263 (1288)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-..++|+......... .+... .
T Consensus 1 F~gR~~el~~l~~~l~~~---~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHH
Confidence 799999999999999763 367899999999999999999999875543355565433222111 11111 1
Q ss_pred ----HHHHhhhcCccc-------cccCCCchhHHHHHHh--cceEEEEeccCCChH-------H----HHHHHhccCCCC
Q 000780 264 ----KQMLSTTLSEKL-------EVAGPNIPHFTKERVR--RMKLLIVLDDVNEVG-------Q----LKRLIGELDQFG 319 (1288)
Q Consensus 264 ----~~ll~~l~~~~~-------~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~-------~----~~~l~~~l~~~~ 319 (1288)
+.+...+..... ..........+.+.+. +++++||+||++... . +..++..... .
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-Q 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-c
Confidence 111111111110 0011111233333333 245999999986555 1 2233333222 2
Q ss_pred CCcEEEEEcCChhHHhh--------hCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 320 QGSRIVVTTRDKRVLEK--------FRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 320 ~gsrIivTTR~~~v~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
..-.+|+++....+... .+ ....+.+++|+.+++++++...+-.. ..-+.-.+..++|+..+||+|..|
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFG--RFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred CCceEEEECCchHHHHHhhcccCcccc--ccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 33445555555544433 12 33459999999999999998865332 110112345699999999999987
Q ss_pred HH
Q 000780 392 EV 393 (1288)
Q Consensus 392 ~~ 393 (1288)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=3e-09 Score=122.74 Aligned_cols=276 Identities=17% Similarity=0.139 Sum_probs=153.0
Q ss_pred cCCCCCcccchhhHHHHHHhhccC--CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMD--SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
|....+|+|++..++.+..++... .+...+.+.++|++|+||||+|+.+++.....+.. . .... ... ...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~---~-~~~~-~~~---~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI---T-SGPA-LEK---PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEE---E-eccc-ccC---hHH
Confidence 456678999999999998887642 11345678899999999999999999987644321 1 1100 011 111
Q ss_pred HHHHHHhhhcCccc-cccCC-----CchhHHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHh
Q 000780 262 LQKQMLSTTLSEKL-EVAGP-----NIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLE 335 (1288)
Q Consensus 262 l~~~ll~~l~~~~~-~~~~~-----~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~ 335 (1288)
...++..+..... -++.. ...+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+..
T Consensus 93 -l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 93 -LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTS 165 (328)
T ss_pred -HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCH
Confidence 1122221111000 00000 0112222333333344444443322221110 022345566777554433
Q ss_pred hhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHhhhcCCCCHHHHHHHhhhhhh
Q 000780 336 KFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNR 415 (1288)
Q Consensus 336 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 415 (1288)
...+.....++++.++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..+...+ ..|.... .-..
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~-~~~~ 237 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK-GDGV 237 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc-CCCC
Confidence 321112346899999999999999987754322 2223568899999999996554444322 1222111 0011
Q ss_pred cCccchhhHHHHHHhhhcCCChhhHHHhh-hcccccC-CCChhHHHHHhhhh---hhhhhH-HhhcCcCeeEe
Q 000780 416 ICESEIHDIYDILKISFNKLTPRVKSIFL-DIACFFE-GEDKDFVASILDDS---ESDVLD-ILIDKSLVSIS 482 (1288)
Q Consensus 416 ~~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~-~~~~~~~~~~l~~~---~~~~l~-~L~~~sLi~~~ 482 (1288)
.....+....+.+...+..|++..+..+. .+..|.. ....+.+...+... .+..++ .|++.+||+..
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 11122233355667788899999888886 5555654 35567777776554 556777 89999999754
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.01 E-value=5.2e-09 Score=133.39 Aligned_cols=327 Identities=16% Similarity=0.177 Sum_probs=189.0
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccc-cCCChHHHHH---
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSE-TAGGLEHLQK--- 264 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~-~~~~l~~l~~--- 264 (1288)
.++||+.+++.|...+..-..+...++.+.|..|||||+++++|...+.+++...+--..-.-... ....+.+..+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 379999999999999977555667899999999999999999999977655221110000000000 0011111222
Q ss_pred ----------------HHHhhhcCccccc--------------------cCCCch--------hHHHHHH-hcceEEEEe
Q 000780 265 ----------------QMLSTTLSEKLEV--------------------AGPNIP--------HFTKERV-RRMKLLIVL 299 (1288)
Q Consensus 265 ----------------~ll~~l~~~~~~~--------------------~~~~~~--------~~l~~~l-~~k~~LlVL 299 (1288)
+++..++...... .+.... ..+.... +.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 2222222111100 001101 1111122 345999999
Q ss_pred ccCCCh-HH----HHHHHhccC--C-CCCCcEEEEEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCc
Q 000780 300 DDVNEV-GQ----LKRLIGELD--Q-FGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPE 371 (1288)
Q Consensus 300 Ddv~~~-~~----~~~l~~~l~--~-~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 371 (1288)
||+.-. .. ++.+..... . .....-.+.|.+..--...........+.+.+|+..+...+..........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--- 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--- 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---
Confidence 999433 22 334433322 0 001122233444331111111125578999999999999999877643222
Q ss_pred hHHHHHHHHHhhhcCCchhHHHHhhhcCCC-------CHHHHHHHhhhhhhcCccchhhHHHHHHhhhcCCChhhHHHhh
Q 000780 372 DLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-------RKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRVKSIFL 444 (1288)
Q Consensus 372 ~~~~l~~~i~~~~~GlPLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl 444 (1288)
...+..+.|+++.+|+|+.+..+-..+... +...|..-...+.... ..+++.+.+..-.+.||...|+++.
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~--~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA--TTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch--hhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 233458899999999999999988887643 3344544333332222 1233455688889999999999999
Q ss_pred hcccccCCCChhHHHHHhhhh----hhhhhHHhhcCcCeeEe--------CC---EEEecHHHHHHHHHHhhccccCCCC
Q 000780 445 DIACFFEGEDKDFVASILDDS----ESDVLDILIDKSLVSIS--------GN---FLNMHDILQEMGRQIVRQESEKEPG 509 (1288)
Q Consensus 445 ~~a~f~~~~~~~~~~~~l~~~----~~~~l~~L~~~sLi~~~--------~~---~~~mHdll~~~~~~i~~~e~~~~~~ 509 (1288)
..||+...++.+.+..+..+. +...++.|.....+..+ .. +-..|+++|+.+-....+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 999999999999988887754 44455555554444321 11 2256888887776665433
Q ss_pred CcccccChhhhhhhhccCC
Q 000780 510 KRSRLWDPKEISRVLKHNK 528 (1288)
Q Consensus 510 ~~~rl~~~~di~~~l~~~~ 528 (1288)
.|...|-.+...+..+.
T Consensus 390 --~rq~~H~~i~~lL~~~~ 406 (849)
T COG3899 390 --QRQYLHLRIGQLLEQNI 406 (849)
T ss_pred --hHHHHHHHHHHHHHHhC
Confidence 23344445555555443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.7e-10 Score=126.94 Aligned_cols=204 Identities=17% Similarity=0.164 Sum_probs=133.1
Q ss_pred cccCcccEEEcccCcCccccc--cccccccccceeeecCccCCCC--cchhhhhccccceeecccccCcccCcc--cCCC
Q 000780 717 ECLTDLEVLDLRGCKRLKRIS--TSFCKLRSLVTLILLGCLNLEH--FPEILEKMEHLKRIYSDRTPITELPSS--FENL 790 (1288)
Q Consensus 717 ~~l~~L~~L~Ls~~~~l~~lp--~~l~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~l~~~~i~~lp~~--l~~l 790 (1288)
.++.+|+...|.++. .+..+ .....|++++.|+|++|-.... +-.....+++|+.|+++.|.+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 456677777777665 33333 2345677777777777644433 234566778888888888877644332 1256
Q ss_pred CCCcEEEeccCCCCC-CCCCcCCCCchHHHHhhcccC-CccCCcccccCCCCcEEEcCCCCCCCccccccccCCCCCcEE
Q 000780 791 PGLEVLFVEDCSKLD-NLPDNIGSLEYLYYILAAASA-ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLL 868 (1288)
Q Consensus 791 ~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~l~~~~-l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 868 (1288)
++|+.|.|+.|.+.. .+-..+..+++|+.|++..|. +..-.....-+..|+.|+|++|.+...-.......++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 788888888888762 222334567788888888884 222222334456788888888887766555556778888888
Q ss_pred EecCCCCCC--Cchh-----hcCCCCCcEEEccCCCCccCc--hhhhcCCCCCEEEecCCCC
Q 000780 869 HISDYAVRE--IPQE-----IAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNM 921 (1288)
Q Consensus 869 ~L~~~~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~ 921 (1288)
+++.|.+.+ +|+. ...+++|++|++..|++.+.+ ..+..+++|+.|.+..|..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 888888876 3443 356788888888888887665 3455566666666655544
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.96 E-value=4e-08 Score=115.96 Aligned_cols=283 Identities=17% Similarity=0.134 Sum_probs=155.6
Q ss_pred CCCCCcccchhhHHHHHHhhccC-CCCCceEEEEEecCCchHHHHHHHHHHHhhcccc------eeEEeeecccccccCC
Q 000780 185 DSSNGLVGLNSRIEQIKPFLCMD-SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE------GSCFVSDVRGNSETAG 257 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~------~~~~~~~~~~~~~~~~ 257 (1288)
..++.++||+.++++|...+... .+.....+.|+|++|+|||++++++++.+..... ..+|+... . . .
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~-~---~-~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ-I---L-D 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC-C---C-C
Confidence 34568999999999999998642 1134567899999999999999999987654322 23344321 1 1 3
Q ss_pred ChHHHHHHHHhhhcC--ccccccCC---CchhHHHHHHh--cceEEEEeccCCChH-----HHHHHHhccCC-CC--CCc
Q 000780 258 GLEHLQKQMLSTTLS--EKLEVAGP---NIPHFTKERVR--RMKLLIVLDDVNEVG-----QLKRLIGELDQ-FG--QGS 322 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~--~~~~~~~~---~~~~~l~~~l~--~k~~LlVLDdv~~~~-----~~~~l~~~l~~-~~--~gs 322 (1288)
+...+...++.++.. ...+..+. +....+.+.+. +++++||||+++... .+..+...... .. ...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 445666667766531 11111111 11233344443 457899999997661 13333322111 11 223
Q ss_pred EEEEEcCChhHHhhhC----C-ccceEEEcCCCCHHHHHHHHhhhhc---CCCCCCchHHHHHHHHHhhhcCCch-hHHH
Q 000780 323 RIVVTTRDKRVLEKFR----G-EEKKIYRVNGLEFEEAFEHFCNFAF---KENHCPEDLNWHSRSVVSYTKGNPL-VLEV 393 (1288)
Q Consensus 323 rIivTTR~~~v~~~~~----~-~~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 393 (1288)
.+|.+|.......... . .....+.+++.+.+|..+++..++- ......++..+.+.+++....|.|- |+..
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4455554443322111 0 1124688999999999999988763 2222233333455666777778874 3333
Q ss_pred Hhhhc-----CCC---CHHHHHHHhhhhhhcCccchhhHHHHHHhhhcCCChhhHHHhhhcccccCC----CChhHHH--
Q 000780 394 LGSSL-----CLK---RKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRVKSIFLDIACFFEG----EDKDFVA-- 459 (1288)
Q Consensus 394 lg~~L-----~~~---~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~----~~~~~~~-- 459 (1288)
+-... .+. +.+..+.+...+. .....-...+||.++|.++..++..-+. .....+.
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 22111 111 3334444333321 2233345678999988887776643321 1111111
Q ss_pred --HHhhh---------hhhhhhHHhhcCcCeeEe
Q 000780 460 --SILDD---------SESDVLDILIDKSLVSIS 482 (1288)
Q Consensus 460 --~~l~~---------~~~~~l~~L~~~sLi~~~ 482 (1288)
.+.++ ....++..|...|||+..
T Consensus 317 y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 317 YKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111 156678889999999875
No 39
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.96 E-value=2.9e-08 Score=119.01 Aligned_cols=296 Identities=15% Similarity=0.203 Sum_probs=184.4
Q ss_pred cccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 182 VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 182 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
.+|....+.|-|..-++.+... .+.|.+.|.-++|.|||||+-+++.+ ...-..+.|+.--. ...+..+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlslde----~dndp~r 81 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSLDE----SDNDPAR 81 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeecCC----ccCCHHH
Confidence 3455677788888655554432 46899999999999999999999884 34446778886322 2244556
Q ss_pred HHHHHHhhhcCccccc----------cC-CCchhHHHHHH---h--cceEEEEeccCCChH------HHHHHHhccCCCC
Q 000780 262 LQKQMLSTTLSEKLEV----------AG-PNIPHFTKERV---R--RMKLLIVLDDVNEVG------QLKRLIGELDQFG 319 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~----------~~-~~~~~~l~~~l---~--~k~~LlVLDdv~~~~------~~~~l~~~l~~~~ 319 (1288)
....++..++...... .. ..+...+...+ . .++..+||||..-.. .++.++... .
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P 158 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---P 158 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---C
Confidence 6666665544222111 00 11112222222 1 357899999974322 255555543 4
Q ss_pred CCcEEEEEcCChhHHhhhCC-ccceEEEcC----CCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHH
Q 000780 320 QGSRIVVTTRDKRVLEKFRG-EEKKIYRVN----GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 320 ~gsrIivTTR~~~v~~~~~~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
++-..|||||...-...... -.+...++. .|+.+|+-++|..... .+- .+.-++.+.+..+|.+-|+..+
T Consensus 159 ~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~L--d~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 159 ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPL--DAADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCC--ChHHHHHHHhhcccHHHHHHHH
Confidence 68889999998733221100 022334444 4899999999987641 111 1233788999999999999998
Q ss_pred hhhcCCC-CHHHHHHHhhhhhhcCccchhhHHHH-HHhhhcCCChhhHHHhhhcccccCCCChhHHHHHhhhh-hhhhhH
Q 000780 395 GSSLCLK-RKSHWGKVLHDLNRICESEIHDIYDI-LKISFNKLTPRVKSIFLDIACFFEGEDKDFVASILDDS-ESDVLD 471 (1288)
Q Consensus 395 g~~L~~~-~~~~w~~~l~~l~~~~~~~~~~i~~~-l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~-~~~~l~ 471 (1288)
+=.+++. +.+.-...+... ...+ .+- ..--+|.||++.|..++.+|++.. +.-+....+.+.. +...++
T Consensus 234 aLa~~~~~~~~q~~~~LsG~----~~~l---~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~ng~amLe 305 (894)
T COG2909 234 ALALRNNTSAEQSLRGLSGA----ASHL---SDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEENGQAMLE 305 (894)
T ss_pred HHHccCCCcHHHHhhhccch----HHHH---HHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCCcHHHHHH
Confidence 8777732 333222222111 1111 221 123368999999999999998842 3333333443333 677899
Q ss_pred HhhcCcCeeEe----CCEEEecHHHHHHHHHHhhccc
Q 000780 472 ILIDKSLVSIS----GNFLNMHDILQEMGRQIVRQES 504 (1288)
Q Consensus 472 ~L~~~sLi~~~----~~~~~mHdll~~~~~~i~~~e~ 504 (1288)
.|..++|+-+. ++.|+.|.++.+|-+.-...+.
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 99999998754 6799999999999998876653
No 40
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=2.1e-08 Score=112.91 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=106.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH-
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER- 289 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~- 289 (1288)
...++.|+|++|+||||+|+.+++.....=-..+++.+ .. .+..++...++..++..............+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999876532111222221 11 344567777776665432211111111222222
Q ss_pred ----HhcceEEEEeccCCChH--HHHHHHhccC---CCCCCcEEEEEcCChhHHhhh--------CCccceEEEcCCCCH
Q 000780 290 ----VRRMKLLIVLDDVNEVG--QLKRLIGELD---QFGQGSRIVVTTRDKRVLEKF--------RGEEKKIYRVNGLEF 352 (1288)
Q Consensus 290 ----l~~k~~LlVLDdv~~~~--~~~~l~~~l~---~~~~gsrIivTTR~~~v~~~~--------~~~~~~~~~l~~L~~ 352 (1288)
..+++.++|+||++... .++.+..... .......|++|.... ..... .......+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 25678999999998754 3444432111 112223445555432 22111 111245688999999
Q ss_pred HHHHHHHhhhhcCCC--CCCchHHHHHHHHHhhhcCCchhHHHHhhhc
Q 000780 353 EEAFEHFCNFAFKEN--HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 398 (1288)
Q Consensus 353 ~ea~~Lf~~~af~~~--~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 398 (1288)
+|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999987653221 1112234678999999999999999988775
No 41
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=6.1e-09 Score=107.86 Aligned_cols=142 Identities=18% Similarity=0.327 Sum_probs=86.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhccc------ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFT 286 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l 286 (1288)
|++.|+|.+|+||||+++.++.++.... ...+|+ ..+..... .....+...+........... ...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~-----~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDS-NNSRSLADLLFDQLPESIAPI-----EELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhc-cccchHHHHHHHhhccchhhh-----HHHH
Confidence 5889999999999999999998765543 333343 34333332 111234443333322211111 1111
Q ss_pred H-HHHhcceEEEEeccCCChHH---------HHHHHhccCC--CCCCcEEEEEcCChhH---HhhhCCccceEEEcCCCC
Q 000780 287 K-ERVRRMKLLIVLDDVNEVGQ---------LKRLIGELDQ--FGQGSRIVVTTRDKRV---LEKFRGEEKKIYRVNGLE 351 (1288)
Q Consensus 287 ~-~~l~~k~~LlVLDdv~~~~~---------~~~l~~~l~~--~~~gsrIivTTR~~~v---~~~~~~~~~~~~~l~~L~ 351 (1288)
. -..+.++++||||+++.... +..++..+.. ..++.++|||+|.... ..... ....+++.+|+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~--~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK--QAQILELEPFS 151 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC--CCcEEEECCCC
Confidence 1 22356799999999865432 2222222221 2578999999998866 22233 34689999999
Q ss_pred HHHHHHHHhhhh
Q 000780 352 FEEAFEHFCNFA 363 (1288)
Q Consensus 352 ~~ea~~Lf~~~a 363 (1288)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.87 E-value=1.1e-08 Score=116.17 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCCCCchhhcCCCCCcEEEccCC-CCccCchhhhcCCCCCEEEecCCCCCCccCCcCccccEEEeeCCC
Q 000780 863 SAMGLLHISDYAVREIPQEIAYLSSLEILYLSGN-NFESLPAIIKQMSQLRFIHLEDFNMLQSLPELPLCLKYLHLIDCK 941 (1288)
Q Consensus 863 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~l~~c~ 941 (1288)
..++.|++++|.++.+|. -.++|+.|.+++| +++.+|..+ .++|+.|++++|..+.. +|.+|+.|++. +.
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~-~n 122 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG---LPESVRSLEIK-GS 122 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc---cccccceEEeC-CC
Confidence 444455555554554441 2234555555542 344444332 23455555555543332 23344555543 22
Q ss_pred CCCccCCCCCCcceeeccCCCCc--CCCCC-CCCCCcEEeccCCCCccCCCCCCCcccEEecccccCcCccchhhhcCCC
Q 000780 942 MLQSLPVLPFCLESLDLTGCNML--RSLPE-LPLCLQYLNLEDCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQE 1018 (1288)
Q Consensus 942 ~l~~~~~~~~~L~~L~Ls~n~~~--~~l~~-~~~~L~~L~Ls~n~~l~~lp~~~~sL~~L~l~~c~~l~~lp~~l~~L~~ 1018 (1288)
....++.+|++|+.|.+.+++.. ..+|. +|++|++|++++|......+.+|.+|+.|.++++.
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~-------------- 188 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ-------------- 188 (426)
T ss_pred CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccc--------------
Confidence 22333444445555555332211 11121 33445555555555443222344555555554431
Q ss_pred cchhhhhhhccCCCCCCcCcccccccccceeccCccccChhhh
Q 000780 1019 LDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKAN 1061 (1288)
Q Consensus 1019 L~~l~l~~l~~~~p~l~~~p~~l~~~l~~l~~~nC~~L~~~~~ 1061 (1288)
|-.+......+|.++ .|.|.+|.+++.++.
T Consensus 189 ------------~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 189 ------------KTTWNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred ------------cccccCccccccccc-EechhhhcccCHHHh
Confidence 111111223455566 899999988876543
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.1e-09 Score=128.34 Aligned_cols=180 Identities=28% Similarity=0.411 Sum_probs=116.6
Q ss_pred cccccceeeecCccCCCCcchhhhhcc-ccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHH
Q 000780 742 KLRSLVTLILLGCLNLEHFPEILEKME-HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYI 820 (1288)
Q Consensus 742 ~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 820 (1288)
.++.++.|++.++. ...+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|++.. +|...+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 44555555555533 333444444443 6666666666666666556666666666666665432 33333456667777
Q ss_pred hhcccCCccCCcccccCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCcc
Q 000780 821 LAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFES 900 (1288)
Q Consensus 821 ~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 900 (1288)
++++|.+..+|..+..+..|++|.+++|....... ....+..+..|.+.+|.+..++..++.+++|+.|++++|.++.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 77777777777666666667777777774222211 2445566666667777777777778888888888888888888
Q ss_pred CchhhhcCCCCCEEEecCCCCCCccC
Q 000780 901 LPAIIKQMSQLRFIHLEDFNMLQSLP 926 (1288)
Q Consensus 901 lp~~l~~l~~L~~L~L~~~~~l~~lp 926 (1288)
++. ++.+.+|+.|+++++......|
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccc-ccccCccCEEeccCccccccch
Confidence 886 8888888888888877665554
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=2.7e-09 Score=127.45 Aligned_cols=154 Identities=29% Similarity=0.369 Sum_probs=86.9
Q ss_pred CceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeeccc
Q 000780 698 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 777 (1288)
Q Consensus 698 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 777 (1288)
+++.|+++.|.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+.|++++|. +..+|..++.+..|++|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence 3444444555555555555666666666666655 34444434455666666666533 344454444455566666666
Q ss_pred ccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccc
Q 000780 778 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 855 (1288)
Q Consensus 778 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 855 (1288)
|.+..++..+.++.++..|.+.+|.... ++..++.+++|+.|++++|.+..++. +..+.+|+.|+++++......+
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred CcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 6555555556666666666655544322 24455566666666666666666655 6666666666666666554433
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=4.4e-10 Score=127.33 Aligned_cols=170 Identities=24% Similarity=0.310 Sum_probs=110.3
Q ss_pred cceEEeCCCCCCCCCCCC-CCCCceEEecCCCccccCCCCCccccCcccccccccceecccCccCccccCCCCCcCCCcE
Q 000780 602 LRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVT 680 (1288)
Q Consensus 602 Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~ 680 (1288)
-...+++.|.+..+|..+ .+..|..|.|..|.+.. +|..++++..|.+|+|+.|. +..+|..+.+.-
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~--------ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp--- 144 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT--------IPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP--- 144 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcccee--------cchhhhhhhHHHHhhhccch-hhcCChhhhcCc---
Confidence 344566666666666555 45556666666666554 36666666666666666554 333333322222
Q ss_pred EEecCCcCCcccCCcccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCc
Q 000780 681 INFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHF 760 (1288)
Q Consensus 681 L~L~~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~ 760 (1288)
|+.|-+++|+++.+|..++.+..|..||.+.|. +..+|..++.+.+|+.|++..|. +..+
T Consensus 145 ------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~l 204 (722)
T KOG0532|consen 145 ------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDL 204 (722)
T ss_pred ------------------ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhC
Confidence 355556667777777777777777778877776 55666667777777777777754 4456
Q ss_pred chhhhhccccceeecccccCcccCcccCCCCCCcEEEeccCCCC
Q 000780 761 PEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 804 (1288)
Q Consensus 761 p~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~ 804 (1288)
|+.+..+ .|..|++++|++..||-.|.+|+.|++|.|.+|++.
T Consensus 205 p~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 6666643 477777888888888877777777777777777754
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1.5e-09 Score=113.20 Aligned_cols=108 Identities=22% Similarity=0.201 Sum_probs=91.9
Q ss_pred cCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCc
Q 000780 810 NIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLE 889 (1288)
Q Consensus 810 ~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~ 889 (1288)
.+...+.|+.|++++|.++.+..++...+.++.|++++|.+...- .+..+++|+.|+|++|.++++..|-..+-+.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh---hhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 344567899999999999999999999999999999999865432 26678899999999999999888878888999
Q ss_pred EEEccCCCCccCchhhhcCCCCCEEEecCCCC
Q 000780 890 ILYLSGNNFESLPAIIKQMSQLRFIHLEDFNM 921 (1288)
Q Consensus 890 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 921 (1288)
.|.|++|.+.++. +++.+-+|..||+++|++
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheeccccccch
Confidence 9999999988876 578888899999988764
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.8e-09 Score=119.16 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=116.9
Q ss_pred cccccCcccEEEcccCcCccccc--cccccccccceeeecCccCCCCcchh-hhhccccceeecccccCc--ccCcccCC
Q 000780 715 SIECLTDLEVLDLRGCKRLKRIS--TSFCKLRSLVTLILLGCLNLEHFPEI-LEKMEHLKRIYSDRTPIT--ELPSSFEN 789 (1288)
Q Consensus 715 ~i~~l~~L~~L~Ls~~~~l~~lp--~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~l~~~~i~--~lp~~l~~ 789 (1288)
-...|++++.|||+.|-+....| .-...|++|+.|+|+.|.......+. -..+++|+.|.++.|+++ .+-..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34556677777777654322211 12345677777777766543322211 124567777777777766 33333456
Q ss_pred CCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCC--cccccCCCCcEEEcCCCCCCCcccccc-----ccCC
Q 000780 790 LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP--SSVALSNMLRSLDSSHCKGLESFPRTF-----LLGL 862 (1288)
Q Consensus 790 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~ 862 (1288)
+|+|+.|++..|...........-+..|+.|+|++|++...+ ...+.++.|+.|+++.|.+........ ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 677777777777533333333445677788888888777666 456777888888888777543221111 4568
Q ss_pred CCCcEEEecCCCCCCCch--hhcCCCCCcEEEccCCCCc
Q 000780 863 SAMGLLHISDYAVREIPQ--EIAYLSSLEILYLSGNNFE 899 (1288)
Q Consensus 863 ~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~ 899 (1288)
++|+.|++..|++.+++. .+..+++|+.|.+..|.++
T Consensus 301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 899999999999987663 4667888888888888775
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=1.2e-08 Score=106.68 Aligned_cols=135 Identities=19% Similarity=0.147 Sum_probs=101.0
Q ss_pred CcccCceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhcccccee
Q 000780 694 QISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRI 773 (1288)
Q Consensus 694 ~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 773 (1288)
+.+..|++|+|++|.|+.+..++.-++.++.|++++|.+... .. +..+++|+.|+|++|... .+-.+-.++-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 344567899999999999999999999999999999885443 33 778899999999987533 333344566778888
Q ss_pred ecccccCcccCcccCCCCCCcEEEeccCCCCCC-CCCcCCCCchHHHHhhcccCCccCCc
Q 000780 774 YSDRTPITELPSSFENLPGLEVLFVEDCSKLDN-LPDNIGSLEYLYYILAAASAISQLPS 832 (1288)
Q Consensus 774 ~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~l~~~~l~~lp~ 832 (1288)
.+++|.++.+.. ++.+-+|..|++++|++... --..++++++|+.+.+.+|.+..++.
T Consensus 358 ~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999988887653 67777888888888875421 12357788888888888887776654
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.9e-07 Score=103.12 Aligned_cols=150 Identities=19% Similarity=0.302 Sum_probs=97.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
+.+..+.+||++|+||||||+.++......|...- ....+++++.+-+- +.-+.+
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkdlr~i~e----------------~a~~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKDLREIIE----------------EARKNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHHHHHHHH----------------HHHHHH
Confidence 45677779999999999999999998777654332 22256666655442 222334
Q ss_pred HhcceEEEEeccCC--ChHHHHHHHhccCCCCCCcEEEE--EcCChhHH--hhhCCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 290 VRRMKLLIVLDDVN--EVGQLKRLIGELDQFGQGSRIVV--TTRDKRVL--EKFRGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 290 l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gsrIiv--TTR~~~v~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
..+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||.++... .... ....++++++|+.+|-.+++.+-+
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALl-SR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALL-SRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHh-hhhheeeeecCCHHHHHHHHHHHH
Confidence 45889999999995 445667777654 35665655 67776322 1111 145799999999999999998833
Q ss_pred cCCCCCC-----chHHHHHHHHHhhhcCCc
Q 000780 364 FKENHCP-----EDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 364 f~~~~~~-----~~~~~l~~~i~~~~~GlP 388 (1288)
-.....- .-.++..+.++..++|--
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 2211111 122345567778877753
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=2.9e-09 Score=114.56 Aligned_cols=224 Identities=17% Similarity=0.167 Sum_probs=130.6
Q ss_pred cCceeecCCCcccc-----ccCccccccCcccEEEcccCcCcc----cccc-------ccccccccceeeecCccCCCCc
Q 000780 697 GKVTRLYLGQSAIE-----EVPSSIECLTDLEVLDLRGCKRLK----RIST-------SFCKLRSLVTLILLGCLNLEHF 760 (1288)
Q Consensus 697 ~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~Ls~~~~l~----~lp~-------~l~~l~~L~~L~L~~~~~~~~~ 760 (1288)
..+++|+|++|.+. .+-..+.+.++|+..++++- +++ .+|. .+-.+++|++|+||+|-.-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 34566666666665 23344555666777776652 122 2222 2334567777777776554443
Q ss_pred ch----hhhhccccceeecccccCcccC--------------cccCCCCCCcEEEeccCCCCCC----CCCcCCCCchHH
Q 000780 761 PE----ILEKMEHLKRIYSDRTPITELP--------------SSFENLPGLEVLFVEDCSKLDN----LPDNIGSLEYLY 818 (1288)
Q Consensus 761 p~----~l~~l~~L~~L~l~~~~i~~lp--------------~~l~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~ 818 (1288)
+. .+.++..|++|++.+|.+.... .-++.-+.|+.+....|.+-.. +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 33 3445667777777777665221 1234456677777766654321 122344456666
Q ss_pred HHhhcccCCcc-----CCcccccCCCCcEEEcCCCCCCCcccc---ccccCCCCCcEEEecCCCCCC-----Cchhh-cC
Q 000780 819 YILAAASAISQ-----LPSSVALSNMLRSLDSSHCKGLESFPR---TFLLGLSAMGLLHISDYAVRE-----IPQEI-AY 884 (1288)
Q Consensus 819 ~L~l~~~~l~~-----lp~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~l~~-----lp~~l-~~ 884 (1288)
.+.+..|.|.. +...+..+++|+.|+|.+|.+...-.. ..++.+++|++|++++|.+.. +-..+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 66666665541 233456677888888888876543221 225566778888888887765 22222 34
Q ss_pred CCCCcEEEccCCCCc-----cCchhhhcCCCCCEEEecCCCC
Q 000780 885 LSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNM 921 (1288)
Q Consensus 885 l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 921 (1288)
.|+|+.|.+.+|.++ .+-.++...+.|..|+|++|..
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 678888888888776 2334556677778888877755
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=2.2e-08 Score=107.92 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=97.1
Q ss_pred ccccCcccEEEcccCcCccc----cccccccccccceeeecCccCCC----CcchhhhhccccceeecccccCcccCccc
Q 000780 716 IECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPITELPSSF 787 (1288)
Q Consensus 716 i~~l~~L~~L~Ls~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~~~i~~lp~~l 787 (1288)
+..+..++.|+|++|.+-.. +...+.+.++|+..++++- ..+ .+|+.+.. +...+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~----------------l~~aL 88 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM----------------LSKAL 88 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH----------------HHHHH
Confidence 44567788888888775432 2233445566776666652 111 12222111 11123
Q ss_pred CCCCCCcEEEeccCCCCCCCCC----cCCCCchHHHHhhcccCCccCC--------------cccccCCCCcEEEcCCCC
Q 000780 788 ENLPGLEVLFVEDCSKLDNLPD----NIGSLEYLYYILAAASAISQLP--------------SSVALSNMLRSLDSSHCK 849 (1288)
Q Consensus 788 ~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~l~~~~l~~lp--------------~~l~~l~~L~~L~L~~~~ 849 (1288)
...++|++|+||+|-+....+. -+.++..|++|++.+|.+...- ..+...+.|+++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 3445666666666665433332 2345667777777777665221 112334556666666665
Q ss_pred CCCcccc----ccccCCCCCcEEEecCCCCCC-----CchhhcCCCCCcEEEccCCCCc-----cCchhhhcCCCCCEEE
Q 000780 850 GLESFPR----TFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIH 915 (1288)
Q Consensus 850 ~~~~~~~----~~~~~~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~ 915 (1288)
+-. .+. ..+...+.|+.+.++.|.+.. +-..+..+++|+.|||..|.|+ .+...+..+++|+.|+
T Consensus 169 len-~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LEN-GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccc-ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 322 111 113344566666666665543 2234555666666666666655 2334445555666666
Q ss_pred ecCCCC
Q 000780 916 LEDFNM 921 (1288)
Q Consensus 916 L~~~~~ 921 (1288)
+++|..
T Consensus 248 l~dcll 253 (382)
T KOG1909|consen 248 LGDCLL 253 (382)
T ss_pred cccccc
Confidence 665543
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=2e-06 Score=102.33 Aligned_cols=179 Identities=18% Similarity=0.291 Sum_probs=107.7
Q ss_pred cCCCCCcccchhhHHH---HHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChH
Q 000780 184 TDSSNGLVGLNSRIEQ---IKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
|....++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|... ... . .+..
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l---~a~-----~-~~~~ 75 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL---SAV-----T-SGVK 75 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE---ecc-----c-ccHH
Confidence 4455679999888666 7777754 3456788999999999999999999775544221 110 1 2222
Q ss_pred HHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEE--EcCChh--HH
Q 000780 261 HLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVV--TTRDKR--VL 334 (1288)
Q Consensus 261 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIiv--TTR~~~--v~ 334 (1288)
.+. +++... ......+++.+|++|+++.. .+.+.++..+. .|..++| ||.+.. +.
T Consensus 76 ~ir-~ii~~~---------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 76 DLR-EVIEEA---------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVN 136 (413)
T ss_pred HHH-HHHHHH---------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhcc
Confidence 222 121111 00112356789999999754 34566665543 2444444 344432 21
Q ss_pred hhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHhhhcCCchhHHHH
Q 000780 335 EKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 335 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
....+ ....+++.+++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+
T Consensus 137 ~aL~S-R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 137 PALLS-RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHhc-cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 22211 346899999999999999987653211111 222455778899999998755433
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=6.8e-08 Score=98.42 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=35.7
Q ss_pred hHHHHhhcccCCccCCcccc-cCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhh-cCCCCCcEEEc
Q 000780 816 YLYYILAAASAISQLPSSVA-LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEILYL 893 (1288)
Q Consensus 816 ~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~L 893 (1288)
.++.|++.+|.++.+. .++ .+.+|+.|++++|.+..- ..+..++.|+.|++++|.++.++..+ ..+++|+.|+|
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4555555555555543 233 456667777777664432 12455677788888888888776554 35788888888
Q ss_pred cCCCCccCc--hhhhcCCCCCEEEecCCCCCC
Q 000780 894 SGNNFESLP--AIIKQMSQLRFIHLEDFNMLQ 923 (1288)
Q Consensus 894 s~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~ 923 (1288)
++|++.++. ..+..+++|+.|+|.+|+...
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 888777554 356677888888888877653
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=4e-08 Score=100.10 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=36.1
Q ss_pred ccceeecccccCcccCcccC-CCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCccc-ccCCCCcEEEcC
Q 000780 769 HLKRIYSDRTPITELPSSFE-NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSV-ALSNMLRSLDSS 846 (1288)
Q Consensus 769 ~L~~L~l~~~~i~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~L~ 846 (1288)
++++|++.+|.|+.+.. ++ .+.+|+.|++++|.+.. + +.+..++.|+.|++++|.++.+...+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L- 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL- 95 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE--
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC-
Confidence 44555555555554432 32 34455555555554432 1 12333444444444444444443332 23444444444
Q ss_pred CCCCCCccccccccCCCCCcEEEecCCCCCCCc--hhhcCCCCCcEEEccCCCCccCc----hhhhcCCCCCEEEec
Q 000780 847 HCKGLESFPRTFLLGLSAMGLLHISDYAVREIP--QEIAYLSSLEILYLSGNNFESLP----AIIKQMSQLRFIHLE 917 (1288)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~L~ 917 (1288)
++|.+.++. ..+..+++|+.|+|.+|.++..+ ..+..+|+|+.||-.
T Consensus 96 ------------------------~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 ------------------------SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ------------------------TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ------------------------cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 444444322 23556777777888777777554 245677888887654
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=98.55 E-value=8.8e-07 Score=96.33 Aligned_cols=149 Identities=16% Similarity=0.230 Sum_probs=89.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
..+.+.|||++|+|||+||+++++....+...+.|+.... ......+ +.+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~~~~~~~--------------------~~~~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------SQYFSPA--------------------VLENL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------hhhhhHH--------------------HHhhc
Confidence 3467899999999999999999998766666667765210 0000001 11111
Q ss_pred hcceEEEEeccCCCh---HHHH-HHHhccCCC-CCCcEEEEE-cCC---------hhHHhhhCCccceEEEcCCCCHHHH
Q 000780 291 RRMKLLIVLDDVNEV---GQLK-RLIGELDQF-GQGSRIVVT-TRD---------KRVLEKFRGEEKKIYRVNGLEFEEA 355 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~~---~~~~-~l~~~l~~~-~~gsrIivT-TR~---------~~v~~~~~~~~~~~~~l~~L~~~ea 355 (1288)
+ +.-+|||||++.. .+|+ .+...+... ..|+.+||+ ++. +.+...+. ....++++++++++.
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~--~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT--WGEIYQLNDLTDEQK 166 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh--cCCeeeCCCCCHHHH
Confidence 2 2348999999763 2333 222222211 245666554 443 34444444 456899999999999
Q ss_pred HHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 356 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 356 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
++++.+.++.... .--.+..+-|++.+.|..-++.
T Consensus 167 ~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 167 IIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 9999998864332 1223456677777776654444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=4.2e-07 Score=103.49 Aligned_cols=154 Identities=21% Similarity=0.316 Sum_probs=94.5
Q ss_pred CCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCC-CCCCCchhhcCCCCCcEEEccCC-CCccCchhhhcCCCCCEE
Q 000780 837 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY-AVREIPQEIAYLSSLEILYLSGN-NFESLPAIIKQMSQLRFI 914 (1288)
Q Consensus 837 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 914 (1288)
+.+++.|++++|. +..+| .-.++|+.|.+++| .+..+|..+ .++|++|++++| ++..+|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCC-CcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 4556666666663 33344 12345777777664 334456543 357888888887 6666764 46667
Q ss_pred EecCCCCCCccCCcCccccEEEeeCCCCC--CccC-CCCCCcceeeccCCCCcCCCCCCCCCCcEEeccCCCCcc---CC
Q 000780 915 HLEDFNMLQSLPELPLCLKYLHLIDCKML--QSLP-VLPFCLESLDLTGCNMLRSLPELPLCLQYLNLEDCNMLR---SL 988 (1288)
Q Consensus 915 ~L~~~~~l~~lp~~~~~L~~L~l~~c~~l--~~~~-~~~~~L~~L~Ls~n~~~~~l~~~~~~L~~L~Ls~n~~l~---~l 988 (1288)
++.. .....++.+|++|+.|.+.++... ..++ .+|++|+.|++++|......+.++.+|+.|.++.|.... ..
T Consensus 118 ~L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~ 196 (426)
T PRK15386 118 EIKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISF 196 (426)
T ss_pred EeCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccccccccCcc
Confidence 7753 344456777778888887543321 2222 356788888888888765434477789999988764221 12
Q ss_pred CCCCCcccEEecccccC
Q 000780 989 PELPLCLQLLTVRNCNR 1005 (1288)
Q Consensus 989 p~~~~sL~~L~l~~c~~ 1005 (1288)
+..++++ .|.+.+|-.
T Consensus 197 ~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 197 EGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ccccccc-Eechhhhcc
Confidence 2345666 888888743
No 57
>PTZ00202 tuzin; Provisional
Probab=98.45 E-value=8.9e-06 Score=91.77 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhccccc----cccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc
Q 000780 166 VNKIVEDVLKKLEKIT----VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE 241 (1288)
Q Consensus 166 i~~i~~~v~~~l~~~~----~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~ 241 (1288)
.+--++...+..++.. ..|.+...|+||+.++.+|...|...+.+..+++.|.|++|+|||||++.+.....
T Consensus 236 l~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~---- 311 (550)
T PTZ00202 236 LKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG---- 311 (550)
T ss_pred HHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----
Confidence 3334455555544421 34667789999999999999999754434567999999999999999999997654
Q ss_pred eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH-----h-cceEEEEec--cCCChHHHHHHHh
Q 000780 242 GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV-----R-RMKLLIVLD--DVNEVGQLKRLIG 313 (1288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVLD--dv~~~~~~~~l~~ 313 (1288)
..+++.+. .+..++++.++.+++.+.... ..++.+.+.+.+ . +++.+||+- +=.+..-.-.-.-
T Consensus 312 ~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~-k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v 383 (550)
T PTZ00202 312 MPAVFVDV-------RGTEDTLRSVVKALGVPNVEA-CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV 383 (550)
T ss_pred ceEEEECC-------CCHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH
Confidence 33555544 355789999999988633221 112223333322 2 566777764 2222221111111
Q ss_pred ccCCCCCCcEEEEEcCChhHHhh-hCCccceEEEcCCCCHHHHHHHHhhh
Q 000780 314 ELDQFGQGSRIVVTTRDKRVLEK-FRGEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 314 ~l~~~~~gsrIivTTR~~~v~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
.+...-.-|.|++----+.+... .....-+.|-++.++.++|.++-...
T Consensus 384 ~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 384 ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 22222455677765433322211 11124468999999999998886544
No 58
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=3.3e-07 Score=102.23 Aligned_cols=279 Identities=20% Similarity=0.199 Sum_probs=178.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
+..|.+.++|.|||||||++-.+.. ++..|...+++.+.+..++. ..+.-.+...++.... .+......+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~--~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQ--PGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhcccccc--cchHHHHHHHHH
Confidence 4568999999999999999999999 88899998888777766655 2222222222222211 112223566777
Q ss_pred HhcceEEEEeccCCChHH-HHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcCCCCHH-HHHHHHhhhhcCCC
Q 000780 290 VRRMKLLIVLDDVNEVGQ-LKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFE-EAFEHFCNFAFKEN 367 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~~~-~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~ 367 (1288)
..+++.++|+||-.+... -..+...+....+.-+|+.|+|...... ....+.++.|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhc
Confidence 888999999999866543 3333333443456667889999654332 4567888888876 79999877653211
Q ss_pred ---CCCchHHHHHHHHHhhhcCCchhHHHHhhhcCCCCHHHHHHHhhh----hhhcC---ccchhhHHHHHHhhhcCCCh
Q 000780 368 ---HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHD----LNRIC---ESEIHDIYDILKISFNKLTP 437 (1288)
Q Consensus 368 ---~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~----l~~~~---~~~~~~i~~~l~~sy~~L~~ 437 (1288)
.-...-.....+|.+...|.|++|...++..+.-...+-...+.. +.... ...-......+..||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 011222345788999999999999999998876655444433332 22111 01113346788999999999
Q ss_pred hhHHHhhhcccccCCCChhHHHHHhhhh--------hhhhhHHhhcCcCeeEeC----CEEEecHHHHHHHHHHh
Q 000780 438 RVKSIFLDIACFFEGEDKDFVASILDDS--------ESDVLDILIDKSLVSISG----NFLNMHDILQEMGRQIV 500 (1288)
Q Consensus 438 ~~k~~fl~~a~f~~~~~~~~~~~~l~~~--------~~~~l~~L~~~sLi~~~~----~~~~mHdll~~~~~~i~ 500 (1288)
.++-.|-.++.|...+..+.......+. ....+..+++++++...+ -.++.-+-.+.++....
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888776432221111 344566788898876542 23333344444444443
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.39 E-value=3e-06 Score=92.63 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=100.7
Q ss_pred CCCccc--chhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHH
Q 000780 187 SNGLVG--LNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQK 264 (1288)
Q Consensus 187 ~~~~vG--r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 264 (1288)
.++|++ .+..++.+.+++.. ...+.+.|+|.+|+|||+||+.++++........+|+.. ...... ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~~~~~-------~~ 82 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AELAQA-------DP 82 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HHHHHh-------HH
Confidence 345552 34457777776543 346788899999999999999999876555444555541 111100 00
Q ss_pred HHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH---H-HHHHHhccCC-CCCCcEEEEEcCChh-------
Q 000780 265 QMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG---Q-LKRLIGELDQ-FGQGSRIVVTTRDKR------- 332 (1288)
Q Consensus 265 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~---~-~~~l~~~l~~-~~~gsrIivTTR~~~------- 332 (1288)
.++ +.+.. .-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 83 ~~~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 83 EVL--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred HHH--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 111 11122 2389999996542 1 2233322211 123457889887532
Q ss_pred --HHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHh
Q 000780 333 --VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLG 395 (1288)
Q Consensus 333 --v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 395 (1288)
+...+. ....++++++++++...++...+-.... .--.+..+.+++.+.|+|..+..+.
T Consensus 142 ~~L~~r~~--~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 142 PDLRTRLA--WGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHh--cCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 122221 2357999999999999998875432211 1123456777778888887766554
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.38 E-value=9.3e-07 Score=97.41 Aligned_cols=141 Identities=22% Similarity=0.364 Sum_probs=99.4
Q ss_pred CCcccEEEccccccCCCchHHHHHHHHhhcCCcceEecCCCCCCCCCchHHHHHHhhccceEEEEeccCccc--------
Q 000780 8 SGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYAS-------- 79 (1288)
Q Consensus 8 ~~~~dvfis~~~~d~r~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~S~~y~~-------- 79 (1288)
..+.|||||||..- -...++-+.-.| .-+|++||+|-+.+..|. +.+.+.+-|..+|-+|.|++||..+
T Consensus 610 skq~DVFISYRRst-GnQLASLiKV~L-QL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 610 SKQIDVFISYRRST-GNQLASLIKVLL-QLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred cCCcceEEEeeccc-cHHHHHHHHHHH-HhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 46799999998543 366788887788 999999999998899887 5668999999999999999998643
Q ss_pred chhhHHHHHHHHHHhhcCCcEEEEEEeecCCccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHhccccCCCCCccC
Q 000780 80 SKWCLHELLKILECKKMKGQIIIPVFYGVSPSDVRHQNGTFGDGFDELKKQFQDKPEMVLKWRDALTETSHLAGHESAKF 159 (1288)
Q Consensus 80 s~wcl~El~~i~~~~~~~~~~v~Pvfy~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 159 (1288)
-.|...|++.+++|.++ ++|||-. ||+...+. + ..-+....+.+.+|. .-..
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D~---------------aFE~Pt~e-----d---~iPnDirmi~kyNGv-KWvH 738 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFDT---------------AFEFPTKE-----D---QIPNDIRMITKYNGV-KWVH 738 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeecc---------------cccCCCch-----h---cCcHHHHHHHhccCe-eeeh
Confidence 35888899999998864 9999722 12111110 0 011112223334442 1122
Q ss_pred CChHHHHHHHHHHHHHhccc
Q 000780 160 RHDAQLVNKIVEDVLKKLEK 179 (1288)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~ 179 (1288)
.++..-+++||.-+..++++
T Consensus 739 dYQdA~maKvvRFitGe~nR 758 (832)
T KOG3678|consen 739 DYQDACMAKVVRFITGELNR 758 (832)
T ss_pred hhHHHHHHHHHHHHhccccC
Confidence 45667788888888888877
No 61
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.38 E-value=1.2e-05 Score=97.54 Aligned_cols=209 Identities=14% Similarity=0.115 Sum_probs=111.7
Q ss_pred cCCCCCcccchhhHHHHHHhhccC--CCCCceEEEEEecCCchHHHHHHHHHHHhhcc-----cc--eeEEeeecccccc
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMD--SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE-----FE--GSCFVSDVRGNSE 254 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----F~--~~~~~~~~~~~~~ 254 (1288)
...++.+.|||.++++|...|... ......++.|+|++|.|||++++.|.+++... .. ..+++.+. ..
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm-~L-- 827 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM-NV-- 827 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC-cc--
Confidence 345578999999999999888642 11334677899999999999999999866432 22 13344321 11
Q ss_pred cCCChHHHHHHHHhhhcCccccccCCC---chhHHHHHH-h--cceEEEEeccCCChH--HHHHHHhccCCC-CCCcEEE
Q 000780 255 TAGGLEHLQKQMLSTTLSEKLEVAGPN---IPHFTKERV-R--RMKLLIVLDDVNEVG--QLKRLIGELDQF-GQGSRIV 325 (1288)
Q Consensus 255 ~~~~l~~l~~~ll~~l~~~~~~~~~~~---~~~~l~~~l-~--~k~~LlVLDdv~~~~--~~~~l~~~l~~~-~~gsrIi 325 (1288)
.....+...+..++...... .+.. ....+.+.+ . +...+||||+|+... .-+.|...+.|. ..+++|+
T Consensus 828 --stp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 828 --VHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred --CCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 23445555555555332221 1111 112222222 1 123589999997432 112222222221 2456654
Q ss_pred E--EcCChhH----HhhhCC-ccceEEEcCCCCHHHHHHHHhhhhcCC-C-CCCchHHHHHHHHHhhhcCCchhHHHHhh
Q 000780 326 V--TTRDKRV----LEKFRG-EEKKIYRVNGLEFEEAFEHFCNFAFKE-N-HCPEDLNWHSRSVVSYTKGNPLVLEVLGS 396 (1288)
Q Consensus 326 v--TTR~~~v----~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~-~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 396 (1288)
| +|.+.++ ...+.+ .....+..++.+.++-.+++..++-.. . ..++..+-+|+.++...|..-.||.++-.
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 4 3322111 111110 012236679999999999998887432 1 12233333444455444555666666554
Q ss_pred hc
Q 000780 397 SL 398 (1288)
Q Consensus 397 ~L 398 (1288)
+.
T Consensus 985 Ag 986 (1164)
T PTZ00112 985 AF 986 (1164)
T ss_pred HH
Confidence 44
No 62
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=3.5e-06 Score=82.64 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=79.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 292 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 292 (1288)
+++.|.|+-|+||||++++++.+.. .-...+|+. .. +... ...... +..+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~-------~~~~-~~~~~~------------~~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FD-------DPRD-RRLADP------------DLLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cC-------CHHH-HHHhhh------------hhHHHHHHhhcc
Confidence 6889999999999999999998765 334455553 11 1111 000000 011334444444
Q ss_pred ceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhC----CccceEEEcCCCCHHHH
Q 000780 293 MKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR----GEEKKIYRVNGLEFEEA 355 (1288)
Q Consensus 293 k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~----~~~~~~~~l~~L~~~ea 355 (1288)
++.+|+||+|.....|...+..+...++..+|++|+........-. .+....+++.+|+-.|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7789999999988888777776665566789999999876663310 11345689999988773
No 63
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=4.1e-05 Score=88.55 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=113.4
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc--cceeEEeeecccccccCCChH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE--FEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
.|....+++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+++.+-.+ ......-... ..... .+--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~-~~~c 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAI-DPDH 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccC-CCCC
Confidence 4556678999999999999888764 234568899999999999999999865321 1100000000 00000 0000
Q ss_pred HHHHHHHhh----hc--CccccccC----CC-chhHHHHH---H-----hcceEEEEeccCCChH--HHHHHHhccCCCC
Q 000780 261 HLQKQMLST----TL--SEKLEVAG----PN-IPHFTKER---V-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFG 319 (1288)
Q Consensus 261 ~l~~~ll~~----l~--~~~~~~~~----~~-~~~~l~~~---l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~ 319 (1288)
...+.+... +. .......+ .. .++.+++. + .+.+-++|+|+++... ....|+..+....
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111110 00 00000000 01 11333332 2 2346689999997543 3566666555444
Q ss_pred CCcEEEEEcCChh-HHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHh
Q 000780 320 QGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLG 395 (1288)
Q Consensus 320 ~gsrIivTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 395 (1288)
.+..+|++|.+.+ +.....+ ....+.+.+++.++..+++...... .. .+....++..++|.|+....+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~S-Rc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRS-RCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhc-cceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 5666777776653 3333222 4678999999999999999876411 11 1112678999999998655543
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.2e-06 Score=109.64 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=72.6
Q ss_pred ceeecCCCcccc-ccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeeccc
Q 000780 699 VTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 777 (1288)
Q Consensus 699 L~~L~L~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 777 (1288)
++.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 456666666665 5666777777777777777777677777777777777777777777777777777777777777777
Q ss_pred ccCc-ccCcccCCC-CCCcEEEeccCCCCC
Q 000780 778 TPIT-ELPSSFENL-PGLEVLFVEDCSKLD 805 (1288)
Q Consensus 778 ~~i~-~lp~~l~~l-~~L~~L~L~~~~~~~ 805 (1288)
|.+. .+|..+..+ .++..+++.+|..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 7666 566655543 345566666665443
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.26 E-value=1.2e-05 Score=83.62 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=99.9
Q ss_pred cccCCCCCcccchhhHHHHHHhhccC--CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCCh
Q 000780 182 VSTDSSNGLVGLNSRIEQIKPFLCMD--SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGL 259 (1288)
Q Consensus 182 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l 259 (1288)
..|...++|||-+.-++.+.-++... .++...-+.+||++|+||||||.-+++.....|.. ... ... ...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg--~~i---~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG--PAI---EKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC--CC-----SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc--hhh---hhH
Confidence 34567789999999988877666532 22456778899999999999999999988777632 110 000 111
Q ss_pred HHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCC--------CCCc-------
Q 000780 260 EHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQF--------GQGS------- 322 (1288)
Q Consensus 260 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~--------~~gs------- 322 (1288)
.++.. ++. .++ ++-+|.+|.+... .+-+.|.+....+ ++++
T Consensus 90 ~dl~~-il~--------------------~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 90 GDLAA-ILT--------------------NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp HHHHH-HHH--------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred HHHHH-HHH--------------------hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 12221 111 122 3446777988543 3344444433221 2222
Q ss_pred ----EEEEEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 323 ----RIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 323 ----rIivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
-|=.|||...+...+...-.-+.+++..+.+|-.++..+.+..-+. +-..+.+.+|++.+.|-|--..
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHH
Confidence 3446888766555444323345689999999999999887643222 3345678999999999995443
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.25 E-value=8.3e-06 Score=95.25 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=107.6
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc-ce-eEEeeecccccccCCChHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF-EG-SCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F-~~-~~~~~~~~~~~~~~~~l~~ 261 (1288)
|....+++|++..++.+..++.. +..+.+.++|++|+||||+|+++++.+...- .. .+++. ....... ....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~ 84 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKY 84 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhh
Confidence 44457899999999999998865 3344678999999999999999998765332 22 23332 1111000 0000
Q ss_pred HHH--HHHhhhcCccccccCCCchhHHHHHH---------hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEc
Q 000780 262 LQK--QMLSTTLSEKLEVAGPNIPHFTKERV---------RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTT 328 (1288)
Q Consensus 262 l~~--~ll~~l~~~~~~~~~~~~~~~l~~~l---------~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTT 328 (1288)
+.. ......+.. ..........+++.+ ...+-+||+||++... ....+...+.......++|+||
T Consensus 85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 85 LVEDPRFAHFLGTD--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred hhcCcchhhhhhhh--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe
Confidence 000 000000000 000000112222211 1234489999997543 2344444433334567788777
Q ss_pred CCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 329 RDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 329 R~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
... .+...... ....+++.+++.++..+++...+-..+.. -..+....+++.++|.+-.+
T Consensus 163 ~~~~~~~~~L~s-r~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 163 RQPSKLIPPIRS-RCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CChhhCchhhcC-CceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 543 33232221 34578899999999999988765432221 22345778888888875443
No 67
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.25 E-value=6.1e-06 Score=96.74 Aligned_cols=177 Identities=21% Similarity=0.305 Sum_probs=101.3
Q ss_pred CCCCcccchhhHHHHHHhhccCC----------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccccc
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDS----------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET 255 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~ 255 (1288)
...++.|++..++++.+.+...- -...+-+.++|++|+|||++|+++++.....|-...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~----------- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV----------- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----------
Confidence 34578999999999888764211 022456889999999999999999998765532111
Q ss_pred CCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh-------------H---HHHHHHhccCCC-
Q 000780 256 AGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV-------------G---QLKRLIGELDQF- 318 (1288)
Q Consensus 256 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~~- 318 (1288)
...+....... . ...+...+...-...+.+|+||+++.. + .+..++..+...
T Consensus 189 ---~~~l~~~~~g~---~-----~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 ---GSELVRKYIGE---G-----ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---hHHHHHHhhhH---H-----HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 01111111110 0 000001222222345679999998643 1 133344333322
Q ss_pred -CCCcEEEEEcCChhHHh-hhC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHhhhcCCc
Q 000780 319 -GQGSRIVVTTRDKRVLE-KFR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 319 -~~gsrIivTTR~~~v~~-~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlP 388 (1288)
..+.+||.||...+... ... +..+..++++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 24667888887543221 111 11356799999999999999998875543322 22 355666666653
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.3e-05 Score=91.58 Aligned_cols=192 Identities=13% Similarity=0.161 Sum_probs=110.3
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....+++|-+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ..+.+.-...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~----------~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT----------SNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCCCHHH
Confidence 455678999999999999888653 2346778999999999999999998764221000 0000000000
Q ss_pred HHHHhhhcCccccccCC--CchhHHH---HHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh
Q 000780 264 KQMLSTTLSEKLEVAGP--NIPHFTK---ERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~~--~~~~~l~---~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~ 331 (1288)
.++.......-...+.. .-.+.++ +.+ .+++-++|+|+++... .++.++..+....+..++|++|.+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 11100000000000000 0001111 111 2345689999998665 3667776666555666777776554
Q ss_pred -hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 332 -RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 332 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
.+.....+ ....+++++++.++..+.+...+-..+.. -..+.+..|++.++|.|-.
T Consensus 160 ~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 160 EKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 33333221 34689999999999999888765432211 1234467788899998753
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.2e-05 Score=97.39 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=111.8
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+.+.+...-.. . ... .+.-...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~P-CG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQP-CGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CCC-CcccHHH
Confidence 456678999999999999998753 234566799999999999999999865321000 0 000 0000001
Q ss_pred HHHHhhhcCccccccC--CCchhHHHHHH--------hcceEEEEeccCCChHH--HHHHHhccCCCCCCcEEEEEcCCh
Q 000780 264 KQMLSTTLSEKLEVAG--PNIPHFTKERV--------RRMKLLIVLDDVNEVGQ--LKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~--~~~~~~l~~~l--------~~k~~LlVLDdv~~~~~--~~~l~~~l~~~~~gsrIivTTR~~ 331 (1288)
+.+...-..+-...+. ..-.+.+++.+ .++.-++|||+++.... +..|+..+.......++|+||++.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 1111000000000000 00001111111 23345788999987653 677777665555677888877765
Q ss_pred hH-HhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc-hhHHH
Q 000780 332 RV-LEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP-LVLEV 393 (1288)
Q Consensus 332 ~v-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~ 393 (1288)
+- .....+ ....+.++.++.++..+.+.+.+-..+.. -..+..+.|++.++|.. -|+..
T Consensus 160 ~KIp~TIrS-RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 160 QKIPVTVLS-RCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhccchhhh-heEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33 222221 45689999999999999998766432221 12345678888888865 34443
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=9.5e-06 Score=97.64 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=112.0
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc--ccceeEEeeecccccccCCChHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH--EFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
|....+++|-+.-.+.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.+... ..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc---------~~ 78 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC---------LA 78 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh---------HH
Confidence 4556679999998888988887642 3456789999999999999999987642 222233332100 00
Q ss_pred HHHHH---HhhhcCccccccCCCchhHHHHHH-----hcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEcCC-
Q 000780 262 LQKQM---LSTTLSEKLEVAGPNIPHFTKERV-----RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD- 330 (1288)
Q Consensus 262 l~~~l---l~~l~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTTR~- 330 (1288)
+.... +..+... ...+.+..+.+.+.+ .+++-++|+|+++.. ..++.|+..+....+...+|++|..
T Consensus 79 i~~~~h~dv~el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 79 VRRGAHPDVLEIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred HhcCCCCceEEeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 00000 0000000 000000011122211 234568899999754 3477777776654455566655543
Q ss_pred hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 331 KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 331 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
..+.....+ ....+++.+++.++..+.+.+.+-..+... ..+.+..|++.++|.+--+
T Consensus 157 ~kl~~~I~S-Rc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 157 EKMPPTILS-RTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hhCChHHhc-ceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 333333221 456899999999999999988764433211 2345788999999987533
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-05 Score=98.40 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=112.7
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc---------------------ce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF---------------------EG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~ 242 (1288)
|....++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+.... ..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 455678999999999999888653 2345568999999999999999998764321 00
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCC
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQ 320 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~ 320 (1288)
.+++. . ... .++..+ +++...+ ...-..+++-++|||+++.. +..+.|+..+.....
T Consensus 90 viEid---A-as~-~kVDdI-ReLie~v---------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~ 148 (944)
T PRK14949 90 LIEVD---A-ASR-TKVDDT-RELLDNV---------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPE 148 (944)
T ss_pred EEEec---c-ccc-cCHHHH-HHHHHHH---------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCC
Confidence 11110 0 000 111111 1222111 00112356679999999765 457777776665455
Q ss_pred CcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 321 GSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 321 gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
..++|++|.+. .+.....+ ....|++++|+.++..+.+.+.+-.... ....+.++.|++.++|.|--+
T Consensus 149 ~vrFILaTTe~~kLl~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 149 HVKFLLATTDPQKLPVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred CeEEEEECCCchhchHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 66666655544 44433221 3568999999999999999876533211 122345788999999988533
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-05 Score=94.76 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=109.8
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc---------------------ce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF---------------------EG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~ 242 (1288)
|....++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... ..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr--l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR--LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 4566789999999999999987542 346788999999999999999998653211 11
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCC
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQ 320 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~ 320 (1288)
.+.+.. +.. .++..+. +++.... ..-..+++-++|+|+|+... ....|+..+.....
T Consensus 89 viEIDA----As~-~~VddIR-eli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 89 LIEIDA----ASR-TKVEDTR-ELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred eEEecc----ccc-CCHHHHH-HHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111110 000 1111111 1111100 00112455688999997653 46666666654455
Q ss_pred CcEEEEEcCChh-HHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 321 GSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 321 gsrIivTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
+.++|++|.+.. +..... .....+++.+++.++..+.+.+.+-..+.. -..+....|++.++|-+-
T Consensus 148 ~v~FILaTtd~~kIp~TIl-SRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVI-SRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLR 214 (702)
T ss_pred CcEEEEEECChHhhhHHHH-HhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 667777776642 222211 145689999999999999888766433221 223446788888998764
No 73
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.21 E-value=2.4e-06 Score=90.18 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=36.3
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
.||||+.+++++...+........+.+.|+|.+|+|||+|.++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999964333567999999999999999999999987776
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=2.9e-07 Score=110.12 Aligned_cols=126 Identities=24% Similarity=0.219 Sum_probs=71.7
Q ss_pred eeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeeccccc
Q 000780 700 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTP 779 (1288)
Q Consensus 700 ~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 779 (1288)
+.+++..|.|.++-..+..+++|..|++.+|.+.+ +...+..+++|++|++++|..... ..+..++.|+.|++.+|.
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNL 151 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCc
Confidence 44445555555544445666667777776665333 222244566666666666544332 224445556666777776
Q ss_pred CcccCcccCCCCCCcEEEeccCCCCCCCC-CcCCCCchHHHHhhcccCCccC
Q 000780 780 ITELPSSFENLPGLEVLFVEDCSKLDNLP-DNIGSLEYLYYILAAASAISQL 830 (1288)
Q Consensus 780 i~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~l 830 (1288)
+..++. +..++.|+.+++++|.+...-+ . +..+.+|+.+++.+|.+..+
T Consensus 152 i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 152 ISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred chhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 666553 4446666666666666544332 2 45566667777777666544
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=1.2e-06 Score=109.41 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=78.9
Q ss_pred cccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccccCc-ccCcccCCCCCCcEEEec
Q 000780 721 DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVE 799 (1288)
Q Consensus 721 ~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~ 799 (1288)
.++.|+|++|.+.+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+. .+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899999888888888889999999999998888888888888888888988888887 678888888888888888
Q ss_pred cCCCCCCCCCcCC
Q 000780 800 DCSKLDNLPDNIG 812 (1288)
Q Consensus 800 ~~~~~~~lp~~l~ 812 (1288)
+|.+.+.+|..++
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 8888888877554
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=1e-05 Score=81.55 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=70.0
Q ss_pred ccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhh
Q 000780 191 VGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT 270 (1288)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 270 (1288)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-..++++. ....... ......... .
T Consensus 1 ~~~~~~~~~i~~~~~~~---~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~~~-~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP---PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELFGH-F 71 (151)
T ss_pred CchHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHhhh-h
Confidence 47888888888887642 3568889999999999999999998753333344443 2111111 000000000 0
Q ss_pred cCccccccCCCchhHHHHHHhcceEEEEeccCCCh--H---HHHHHHhccCCC---CCCcEEEEEcCChh
Q 000780 271 LSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--G---QLKRLIGELDQF---GQGSRIVVTTRDKR 332 (1288)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~---~~~~l~~~l~~~---~~gsrIivTTR~~~ 332 (1288)
............++.++|+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223446789999999853 2 233333333221 36778888887543
No 77
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.1e-05 Score=94.22 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=110.8
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccce-eEEeeecccccccCCChHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG-SCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~-~~~~~~~~~~~~~~~~l~~l 262 (1288)
|....++||-+.-++.|.+.+..+. -.+.+.++|..|+||||+|+.+.+.+-..=.. .--+ .....+.-.-
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR--LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~------~~~PCG~C~s 83 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR--LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI------TAQPCGQCRA 83 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC------CCCCCcccHH
Confidence 4566789999999999999987642 34667899999999999999999865321000 0000 0000000011
Q ss_pred HHHHHhhhcCccccccCC--CchhHHHHH--------HhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEE-cC
Q 000780 263 QKQMLSTTLSEKLEVAGP--NIPHFTKER--------VRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVT-TR 329 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~~--~~~~~l~~~--------l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivT-TR 329 (1288)
...+...-..+-...+.. .-.+.+++. ..++.-++|||+++... ..+.|+..+..-..+.++|++ |.
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 111110000000000000 001111111 13445689999997654 477777766654455665554 44
Q ss_pred ChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 330 DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 330 ~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
...+.....+ ....+.++.++.++..+.+.+.+-..+.. ...+..+.|++.++|.|...
T Consensus 164 p~kLlpTIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 164 PQKIPVTVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hHhhhhHHHH-HHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 4455433321 45689999999999999888765332211 12234578899999998633
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.16 E-value=2.1e-05 Score=90.50 Aligned_cols=183 Identities=13% Similarity=0.225 Sum_probs=105.8
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc-ccceeEEeeecccccccCCChHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
.|....+++|.+..++.|..++..+ ..+-+.++|++|+||||+|+.+++.+.. .|...+.-.+. ++. .+...
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~~ 80 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGIDV 80 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHHH
Confidence 3455667999998888888877643 3445779999999999999999997633 33322211111 111 23322
Q ss_pred HHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhC
Q 000780 262 LQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFR 338 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~ 338 (1288)
+... ........... -.++.-++|||+++... ....+...+......+++|+++... .+.....
T Consensus 81 vr~~-i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 81 VRNK-IKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred HHHH-HHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 2222 21111000000 01345689999997643 2344444444445667777766443 2222221
Q ss_pred CccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc
Q 000780 339 GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 388 (1288)
+ ....++++++++++..+.+...+-..+..- ..+....+++.++|-.
T Consensus 148 S-Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 148 S-RCAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDM 194 (319)
T ss_pred H-hhhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 1 235789999999999988887764322211 1344678888888865
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=3.4e-05 Score=88.47 Aligned_cols=178 Identities=16% Similarity=0.228 Sum_probs=110.2
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc------ccceeEEeeecccccccCCChHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH------EFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
.+++|-+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+-. +.+...|.. .. ... .++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~-i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKS-IGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCC-CCHHH
Confidence 46889888899999988653 24567789999999999999999986522 223323322 11 111 23333
Q ss_pred HHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccC--CChHHHHHHHhccCCCCCCcEEEEEcCChhHH-hhhC
Q 000780 262 LQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDV--NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVL-EKFR 338 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv--~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~-~~~~ 338 (1288)
+. ++...+.... ...++| ++|+|++ .+.+.++.|+..+..-.+++.+|++|.+.+.. ....
T Consensus 78 ir-~~~~~~~~~p--------------~~~~~k-v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IR-NIIEEVNKKP--------------YEGDKK-VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HH-HHHHHHhcCc--------------ccCCce-EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22 2222211100 112345 4555555 45556888888877667788888888766433 2222
Q ss_pred CccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHH
Q 000780 339 GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
+ ....+++.++++++..+.+..... . . ..+.++.++.+++|.|..+...
T Consensus 142 S-Rc~~~~~~~~~~~~~~~~l~~~~~-~--~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 S-RCQIYKLNRLSKEEIEKFISYKYN-D--I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred h-hceeeeCCCcCHHHHHHHHHHHhc-C--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 456899999999999888865531 1 1 1233678899999998655433
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-07 Score=99.80 Aligned_cols=158 Identities=18% Similarity=0.144 Sum_probs=88.8
Q ss_pred cCceeecCCCcccc--ccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcc--hhhhhccccce
Q 000780 697 GKVTRLYLGQSAIE--EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP--EILEKMEHLKR 772 (1288)
Q Consensus 697 ~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~ 772 (1288)
..+++|+|+...|+ .+..-+..+.+|+.|.|.|+.+...+-..+.+-.+|+.|+|++|+...... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35677777777776 444556778888888888888777777777788888888888887665543 23455566666
Q ss_pred eecccccCcc--cCcccCC-CCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCC
Q 000780 773 IYSDRTPITE--LPSSFEN-LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCK 849 (1288)
Q Consensus 773 L~l~~~~i~~--lp~~l~~-l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 849 (1288)
|+++.+.+.. +...+.. -++|+.|+++||...- ....+..-...+++|.+|||++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------------~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------------QKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------------hhhHHHHHHHhCCceeeecccccc
Confidence 6666554431 0000100 1234444444432100 011111123456667777777766
Q ss_pred CCCccccccccCCCCCcEEEecCCC
Q 000780 850 GLESFPRTFLLGLSAMGLLHISDYA 874 (1288)
Q Consensus 850 ~~~~~~~~~~~~~~~L~~L~L~~~~ 874 (1288)
.+..-....+..++.|++|.++.|.
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhc
Confidence 5544333334455555555555554
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.14 E-value=4.5e-05 Score=88.30 Aligned_cols=184 Identities=16% Similarity=0.238 Sum_probs=105.7
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....+++|++..++.+..++... ..+.+.++|..|+||||+|+.+++..........++. ... +.. .+...+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~~-~~~~~~~ 86 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SDE-RGIDVIR 86 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-ccc-cchHHHH
Confidence 344567999999999999988653 3445799999999999999999987643321111221 100 111 1112111
Q ss_pred HHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCc
Q 000780 264 KQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGE 340 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~ 340 (1288)
..+ ....... +. ....+-++|+|+++.. +..+.+...+....+.+++|+++... .+......
T Consensus 87 ~~i-~~~~~~~-~~------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s- 151 (319)
T PRK00440 87 NKI-KEFARTA-PV------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS- 151 (319)
T ss_pred HHH-HHHHhcC-CC------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH-
Confidence 111 1110000 00 0122458899998654 23445555544445567777776432 22221111
Q ss_pred cceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 341 EKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 341 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
....+++++++.++....+...+-..+.. -..+....+++.++|.+--
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 23468999999999988888776433221 1234577888889988654
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.11 E-value=2.5e-05 Score=97.71 Aligned_cols=172 Identities=19% Similarity=0.314 Sum_probs=99.6
Q ss_pred cCCCCCcccchhhHH---HHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChH
Q 000780 184 TDSSNGLVGLNSRIE---QIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
|...++++|.+..+. .+...+.. +....+.++|++|+||||+|+.+++.....|. .+..+ . .++.
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~-~~i~ 91 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----L-AGVK 91 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----h-hhhH
Confidence 344567899988774 45555554 44567789999999999999999987765542 12110 0 1222
Q ss_pred HHHHHHHhhhcCccccccCCCchhHHHHHH--hcceEEEEeccCCC--hHHHHHHHhccCCCCCCcEEEE--EcCChh--
Q 000780 261 HLQKQMLSTTLSEKLEVAGPNIPHFTKERV--RRMKLLIVLDDVNE--VGQLKRLIGELDQFGQGSRIVV--TTRDKR-- 332 (1288)
Q Consensus 261 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsrIiv--TTR~~~-- 332 (1288)
.+. +.+. ...+.+ .+++.++||||++. ..+.+.|+.... .|+.++| ||.+..
T Consensus 92 dir-~~i~----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 92 DLR-AEVD----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFE 151 (725)
T ss_pred HHH-HHHH----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhh
Confidence 211 1111 111111 24567999999964 445666665433 3555555 344432
Q ss_pred HHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCC-----CCCCchHHHHHHHHHhhhcCCc
Q 000780 333 VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKE-----NHCPEDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 333 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~l~~~i~~~~~GlP 388 (1288)
+.....+ ....+++++|+.++...++.+.+-.. .....-..+....|++++.|..
T Consensus 152 l~~aL~S-R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 152 VNKALVS-RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhhHhhc-cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 2222211 24579999999999999998765310 1111122345677777887763
No 83
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=4.1e-05 Score=88.03 Aligned_cols=197 Identities=11% Similarity=0.104 Sum_probs=114.5
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc----cceeEEeeecccccccCCC
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE----FEGSCFVSDVRGNSETAGG 258 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----F~~~~~~~~~~~~~~~~~~ 258 (1288)
.|.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.+++.+-.. +...... ...+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr--l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~--------~~~~ 87 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK--LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA--------DPDP 87 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC--CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC--------CCCC
Confidence 45677889999999999999887642 35578899999999999999999876432 1111000 0011
Q ss_pred hHHHHHHHHhh-------hcCc-ccc---ccC-C--CchhHHHHHHh-----cceEEEEeccCCChH--HHHHHHhccCC
Q 000780 259 LEHLQKQMLST-------TLSE-KLE---VAG-P--NIPHFTKERVR-----RMKLLIVLDDVNEVG--QLKRLIGELDQ 317 (1288)
Q Consensus 259 l~~l~~~ll~~-------l~~~-~~~---~~~-~--~~~~~l~~~l~-----~k~~LlVLDdv~~~~--~~~~l~~~l~~ 317 (1288)
-....+.+... +... +.. ... . +..+.+.+.+. +++-++|+|+++... ..+.|+..+..
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 11122222111 0000 000 000 0 00122333332 355689999997644 35566655554
Q ss_pred CCCCcEEE-EEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHH
Q 000780 318 FGQGSRIV-VTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 318 ~~~gsrIi-vTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
...+..+| +|++...+.....+ ....+.+.+++.++..+++...+.... -..+.+..+++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34445544 44444444443332 446899999999999999987432211 11344678999999999865544
No 84
>PRK04195 replication factor C large subunit; Provisional
Probab=98.08 E-value=9.1e-05 Score=90.12 Aligned_cols=182 Identities=15% Similarity=0.192 Sum_probs=107.3
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCC-CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDS-SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
.|....+++|.+..++++.+++..-. +...+.+.|+|++|+||||+|+++++.+. |+. +.+ +. ++. ... .
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-na---sd~-r~~-~ 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NA---SDQ-RTA-D 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cc---ccc-ccH-H
Confidence 34556779999999999999986422 12367899999999999999999999873 222 112 11 111 111 2
Q ss_pred HHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH------HHHHHHhccCCCCCCcEEEEEcCChh-HH
Q 000780 262 LQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG------QLKRLIGELDQFGQGSRIVVTTRDKR-VL 334 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gsrIivTTR~~~-v~ 334 (1288)
...+++...... ......++-+||||+++... .+..+...+. ..+..||+|+.+.. ..
T Consensus 80 ~i~~~i~~~~~~-------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 80 VIERVAGEAATS-------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHHhhcc-------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 222222221100 00011256789999997542 2455544443 23445666664431 11
Q ss_pred h-hhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 335 E-KFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 335 ~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
. .... ....+++++++.++....+...+....... ..+....|++.++|-.-.+
T Consensus 145 ~k~Lrs-r~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 145 LRELRN-ACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhhHhc-cceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 1 1111 345789999999999988887664332211 2345788888888865433
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=8e-07 Score=106.29 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=20.2
Q ss_pred HHHHhhcccCCccCCcccccCCCCcEEEcCCCC
Q 000780 817 LYYILAAASAISQLPSSVALSNMLRSLDSSHCK 849 (1288)
Q Consensus 817 L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~ 849 (1288)
|+.+++++|.+..++..+..+..+..|++.++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcc
Confidence 666777777666665555555555555555554
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.07 E-value=7.3e-06 Score=80.94 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=69.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc-----cceeEEeeecccccccCCChHHHHHHHHhhhcCcccc-ccCCCchh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE-----FEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE-VAGPNIPH 284 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-~~~~~~~~ 284 (1288)
+.+.+.|+|.+|+|||++++.+++..... -..++|+. . ... .....+...++..++..... ....++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---PSS-RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---HHH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---CCC-CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35788999999999999999999976543 23344554 2 222 36778888888887655444 22222335
Q ss_pred HHHHHHhcce-EEEEeccCCCh-H--HHHHHHhccCCCCCCcEEEEEcCC
Q 000780 285 FTKERVRRMK-LLIVLDDVNEV-G--QLKRLIGELDQFGQGSRIVVTTRD 330 (1288)
Q Consensus 285 ~l~~~l~~k~-~LlVLDdv~~~-~--~~~~l~~~l~~~~~gsrIivTTR~ 330 (1288)
.+.+.+...+ .+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5666666554 59999999765 3 3555544333 567777777664
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00088 Score=77.43 Aligned_cols=281 Identities=16% Similarity=0.191 Sum_probs=155.9
Q ss_pred CCCCCcccchhhHHHHHHhhccC-CCCCceEEEEEecCCchHHHHHHHHHHHhhcccce--eEEeeecccccccCCChHH
Q 000780 185 DSSNGLVGLNSRIEQIKPFLCMD-SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG--SCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~ 261 (1288)
..+..+.+||.+++++...|..- .+....-+.|+|.+|.|||+.++.+++++...... .+++.+ .......+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc-----~~~~t~~~ 88 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC-----LELRTPYQ 88 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee-----eeCCCHHH
Confidence 34456999999999999887642 11223348899999999999999999987766443 466642 22256677
Q ss_pred HHHHHHhhhcCccc-cccCCCchhHHHHHHh--cceEEEEeccCCChH-----HHHHHHhccCCCCCCcEE--EEEcCCh
Q 000780 262 LQKQMLSTTLSEKL-EVAGPNIPHFTKERVR--RMKLLIVLDDVNEVG-----QLKRLIGELDQFGQGSRI--VVTTRDK 331 (1288)
Q Consensus 262 l~~~ll~~l~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~-----~~~~l~~~l~~~~~gsrI--ivTTR~~ 331 (1288)
+..+++.+++.... .....+..+.+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 88888887652111 1222223355555554 468999999996433 233333332222 4444 3333333
Q ss_pred hHHhhhCC-----ccceEEEcCCCCHHHHHHHHhhhh---cCCCCCCchHHHHHHHHHhhhcC-CchhHHHHhhh--cCC
Q 000780 332 RVLEKFRG-----EEKKIYRVNGLEFEEAFEHFCNFA---FKENHCPEDLNWHSRSVVSYTKG-NPLVLEVLGSS--LCL 400 (1288)
Q Consensus 332 ~v~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~G-lPLal~~lg~~--L~~ 400 (1288)
.....+.. -....+..++-+.+|-.+.+..++ |......++..+++..++...+| .-.|+..+-.. ++.
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 33222211 122336778888888888887664 44555555666666666666665 33444443322 211
Q ss_pred C------CHHHHHHHhhhhhhcCccchhhHHHHHHhhhcCCChhhHHHhhhcccccCCCChhHHH----HHhhhh-----
Q 000780 401 K------RKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRVKSIFLDIACFFEGEDKDFVA----SILDDS----- 465 (1288)
Q Consensus 401 ~------~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~----~~l~~~----- 465 (1288)
+ +.+.-..+.. ++ -.....-....|+.++|-.+..++..-.+.....+- .+.+..
T Consensus 247 ~~~~~~v~~~~v~~a~~--------~~--~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~ 316 (366)
T COG1474 247 REGSRKVSEDHVREAQE--------EI--ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQR 316 (366)
T ss_pred hhCCCCcCHHHHHHHHH--------Hh--hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHH
Confidence 0 1111111100 00 022334446788999888877766553333322222 111111
Q ss_pred -hhhhhHHhhcCcCeeEe
Q 000780 466 -ESDVLDILIDKSLVSIS 482 (1288)
Q Consensus 466 -~~~~l~~L~~~sLi~~~ 482 (1288)
....+.+|...|+|...
T Consensus 317 ~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 317 RFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHHHhcCeEEee
Confidence 33567777777777654
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7.2e-05 Score=90.23 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=108.9
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc---------------------cce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~ 242 (1288)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 455678999999999999888653 234567899999999999999999865321 111
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCC
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQ 320 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~ 320 (1288)
.+.+.. ... .++..+ ++++..+. ..-..+++-++|+|+++.. ...+.|+..+.....
T Consensus 90 lieida----as~-~gvd~i-r~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 90 LIEIDA----ASR-TGVEET-KEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred eEEeec----ccc-cCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 111110 000 122211 11111110 0012345668999999754 346677766665445
Q ss_pred CcEEEE-EcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch-hHHHH
Q 000780 321 GSRIVV-TTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL-VLEVL 394 (1288)
Q Consensus 321 gsrIiv-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 394 (1288)
..++|+ ||....+.....+ ....+++.+++.++..+.+.+.+-..+. ....+....|++.++|-+- |+..+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~S-Rc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILS-RCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CceEEEEECChhhhhhhHHH-heeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666664 4443344433211 4568999999999988887765432221 1223345778888888653 44433
No 89
>PF14516 AAA_35: AAA-like domain
Probab=98.05 E-value=0.00051 Score=79.06 Aligned_cols=281 Identities=13% Similarity=0.162 Sum_probs=148.2
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccc-cCCChHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSE-TAGGLEHL 262 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~-~~~~l~~l 262 (1288)
+.+.+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.++.+..=-.++++. +..... ........
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 44566788999666666666643 2468899999999999999999988765423344443 433222 22345544
Q ss_pred HHHH----HhhhcCccc-c------c-cCCCchhHHHHHH---hcceEEEEeccCCChHH----HHHHHhccC-CCC---
Q 000780 263 QKQM----LSTTLSEKL-E------V-AGPNIPHFTKERV---RRMKLLIVLDDVNEVGQ----LKRLIGELD-QFG--- 319 (1288)
Q Consensus 263 ~~~l----l~~l~~~~~-~------~-~~~~~~~~l~~~l---~~k~~LlVLDdv~~~~~----~~~l~~~l~-~~~--- 319 (1288)
.+.+ ..+++.... . . ........+.+.+ .+++++|+||+|+..-. .+.+.+.+. |..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 4444 444432210 0 0 1111223444432 25799999999964321 122222211 110
Q ss_pred ---C-Cc--EEEEEcCChhHHhhh-CC--ccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 320 ---Q-GS--RIVVTTRDKRVLEKF-RG--EEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 320 ---~-gs--rIivTTR~~~v~~~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
. .. -|++.+......... .+ .....+++++++.+|..+|...+... . . ....+++...+||+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHHH
Confidence 0 11 122222111111111 10 13457899999999999999877422 1 1 12278999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHhhhhhhcCccchhhHHHHHHhhhcCC--ChhhHHHhhhcccccCCCChhHHHHHhhhhhhh
Q 000780 391 LEVLGSSLCLKRKSHWGKVLHDLNRICESEIHDIYDILKISFNKL--TPRVKSIFLDIACFFEGEDKDFVASILDDSESD 468 (1288)
Q Consensus 391 l~~lg~~L~~~~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L--~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~~~~ 468 (1288)
+..++..+...... .+.+++.-.... ... .+-|+--.+.| .++.+.++..+-.-...... ...
T Consensus 236 v~~~~~~l~~~~~~-~~~l~~~a~~~~-~~~---~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~~~----------~~~ 300 (331)
T PF14516_consen 236 VQKACYLLVEEQIT-LEQLLEEAITDN-GIY---NDHLDRLLDRLQQNPELLEAYQQILFSGEPVDL----------DSD 300 (331)
T ss_pred HHHHHHHHHHccCc-HHHHHHHHHHhc-ccH---HHHHHHHHHHHccCHHHHHHHHHHHhCCCCccc----------ChH
Confidence 99999888543111 122222111000 000 11111111222 33444444433322111111 234
Q ss_pred hhHHhhcCcCeeEeCCEEEecH
Q 000780 469 VLDILIDKSLVSISGNFLNMHD 490 (1288)
Q Consensus 469 ~l~~L~~~sLi~~~~~~~~mHd 490 (1288)
....|...|||...++.+....
T Consensus 301 ~~~~L~~~GLV~~~~~~~~~~n 322 (331)
T PF14516_consen 301 DIYKLESLGLVKRDGNQLEVRN 322 (331)
T ss_pred HHHHHHHCCeEEEeCCEEEEEc
Confidence 5668999999999988887764
No 90
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=7.7e-05 Score=89.43 Aligned_cols=186 Identities=16% Similarity=0.215 Sum_probs=110.4
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc-------eeEEee--------
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE-------GSCFVS-------- 247 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~-------~~~~~~-------- 247 (1288)
.|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|..+
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~ 93 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNN 93 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhc
Confidence 3556678999999999888877653 23467889999999999999999986532110 001110
Q ss_pred ----ecccc-cccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCC
Q 000780 248 ----DVRGN-SETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQ 320 (1288)
Q Consensus 248 ----~~~~~-~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~ 320 (1288)
++.+. .....++..+.. ++.... ..-+.+++-++|+|+++.. ..++.|+..+....+
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 00000 000011111111 111100 0012345668999999874 447777766665455
Q ss_pred CcEEE-EEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 321 GSRIV-VTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 321 gsrIi-vTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
..++| +||+...+.....+ ....+++.+++.++..+.+...+-..+.. -..+....|++.++|.+-
T Consensus 158 ~~vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred CEEEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 66655 45555555544332 34679999999999999998877433321 123346778888988764
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=4.1e-05 Score=93.04 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=107.0
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-..-... ... .+.-...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p---------Cg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP---------CGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC---------CcccHHH
Confidence 456678999999999999998763 2346788999999999999999988653221000 000 0000000
Q ss_pred HHHHhhhcCcccccc--CCCchhHHHHH--------HhcceEEEEeccCCChHH--HHHHHhccCCCCCCcEEEEEcCCh
Q 000780 264 KQMLSTTLSEKLEVA--GPNIPHFTKER--------VRRMKLLIVLDDVNEVGQ--LKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~--~~~~~~~l~~~--------l~~k~~LlVLDdv~~~~~--~~~l~~~l~~~~~gsrIivTTR~~ 331 (1288)
+.+...-...-...+ ...-.+.+++. ..+++-++|||+++.... ...|+..+.......++|++|.+.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 000000000000000 00000111111 124556899999976543 555655554434556677666544
Q ss_pred -hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 332 -RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 332 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
.+.....+ ....+++..++.++..+.+.+.+-..+.. -..+....|++.++|.+.-
T Consensus 160 ~kL~~TIrS-RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 160 HKVPVTVLS-RCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred cccchHHHH-HHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHH
Confidence 23222211 33468889999999999888766433221 1234568889999988743
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=5.7e-05 Score=88.07 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=106.3
Q ss_pred CCCcccchhhHHHHHHhhccCCC-------CCceEEEEEecCCchHHHHHHHHHHHhhccc-------------------
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSS-------DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF------------------- 240 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F------------------- 240 (1288)
..+++|-+.-++.|...+..... .-.+.+.++|+.|+|||++|+.++..+-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 34688999889999888876421 1356788999999999999999988653321
Q ss_pred -ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCC
Q 000780 241 -EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQ 317 (1288)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~ 317 (1288)
+...++.- .... .++.++. ++...... .-..+++-++|+|+++... ....|+..+..
T Consensus 84 hpD~~~i~~---~~~~-i~i~~iR-~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVAP---EGLS-IGVDEVR-ELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEecc---cccc-CCHHHHH-HHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11111110 0000 1111111 11111100 0012334477889997653 34556665554
Q ss_pred CCCCcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHH
Q 000780 318 FGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 318 ~~~gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
..++..+|++|.+. .+.....+ ....+.++.++.++..+.+.... + . . .+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 45567677666654 44434322 45689999999999998887432 1 1 1 244678899999999755443
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=3.7e-06 Score=70.27 Aligned_cols=58 Identities=33% Similarity=0.565 Sum_probs=48.5
Q ss_pred CCCcEEEecCCCCCCCch-hhcCCCCCcEEEccCCCCccCc-hhhhcCCCCCEEEecCCC
Q 000780 863 SAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFN 920 (1288)
Q Consensus 863 ~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~ 920 (1288)
|+|+.|++++|.+..+|. .+..+++|++|++++|+++.+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888774 5788899999999999998887 577889999999998885
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.5e-05 Score=88.80 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=108.5
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc----cc-----------------
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE----FE----------------- 241 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----F~----------------- 241 (1288)
.|....++||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~--l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS--ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 35566789999988888888776532 23567899999999999999999865321 00
Q ss_pred eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCC
Q 000780 242 GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFG 319 (1288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 319 (1288)
....+.. +.. .++..+. ++...... .-..+++-++|+|+++.. ++.+.|+..+....
T Consensus 87 dv~el~a----a~~-~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 87 DVIELDA----ASN-RGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 145 (472)
T ss_pred ccEEEeC----ccc-CCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC
Confidence 1111110 001 2222221 11111000 012245668999999754 34566666655433
Q ss_pred CCcEEEEEcCC-hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcC-CchhHHHHhh
Q 000780 320 QGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKG-NPLVLEVLGS 396 (1288)
Q Consensus 320 ~gsrIivTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G-lPLal~~lg~ 396 (1288)
....+|++|.+ ..+.....+ ....+++.+++.++....+...+...+.. -..+....|++.++| .+.|+..+..
T Consensus 146 ~~vv~Ilattn~~kl~~~L~S-R~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIIS-RCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhc-CcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444444433 344333322 44689999999999988888776432211 123446778877765 4566665544
No 95
>PRK08727 hypothetical protein; Validated
Probab=98.02 E-value=7.6e-05 Score=81.39 Aligned_cols=166 Identities=12% Similarity=0.086 Sum_probs=93.7
Q ss_pred CCCcccchh-hHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHH
Q 000780 187 SNGLVGLNS-RIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQ 265 (1288)
Q Consensus 187 ~~~~vGr~~-~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 265 (1288)
.++|++... .+..+...... .....+.|+|.+|+|||.||+++++....+...+.|+.. .+....
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~---~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----------~~~~~~ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAG---QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----------QAAAGR 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----------HHhhhh
Confidence 345665443 34444333321 233569999999999999999999987666556666641 111111
Q ss_pred HHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH---HH-HHHHhccCC-CCCCcEEEEEcCCh---------
Q 000780 266 MLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG---QL-KRLIGELDQ-FGQGSRIVVTTRDK--------- 331 (1288)
Q Consensus 266 ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~---~~-~~l~~~l~~-~~~gsrIivTTR~~--------- 331 (1288)
+. +.+ +.+. +.-+|||||++... .+ +.+...+.. ...|..||+|++..
T Consensus 84 ~~----------------~~~-~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 84 LR----------------DAL-EALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred HH----------------HHH-HHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 10 111 1111 23489999996331 12 222222111 13466799999854
Q ss_pred hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc
Q 000780 332 RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 332 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 388 (1288)
.+...+. ....+++++++.++-.+++.+++..... .--.+...-+++.+.|-.
T Consensus 146 dL~SRl~--~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 146 DLRSRLA--QCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHHHHh--cCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 2222222 2458999999999999999987743221 122334566666666543
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=8.4e-05 Score=80.01 Aligned_cols=177 Identities=13% Similarity=0.180 Sum_probs=94.0
Q ss_pred CCc-ccchhhH-HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc--eeEEeeecccccccCCChHHHH
Q 000780 188 NGL-VGLNSRI-EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 188 ~~~-vGr~~~~-~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
++| +|-..+. -...+.+....+.....+.|+|..|.|||.|.+++++.+....+ .++|+. .....
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~ 76 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFI 76 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHH
Confidence 445 4654442 22333343333244556889999999999999999998765443 244553 22333
Q ss_pred HHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH---HHH-HHHhccCC-CCCCcEEEEEcCCh-------
Q 000780 264 KQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG---QLK-RLIGELDQ-FGQGSRIVVTTRDK------- 331 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~---~~~-~l~~~l~~-~~~gsrIivTTR~~------- 331 (1288)
..+...+... ....+++.++.- =+|+|||++... .|+ .+...+.. ...|.+||+|++..
T Consensus 77 ~~~~~~~~~~--------~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 77 REFADALRDG--------EIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHHTT--------SHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHHcc--------cchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 3333332221 114455555543 478899996532 121 22221111 13577899999544
Q ss_pred --hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc
Q 000780 332 --RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 332 --~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 388 (1288)
.+...+. ..-+++++++++++..+++.+.+-..... --+++++-+++.+.+..
T Consensus 148 ~~~L~SRl~--~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 148 LPDLRSRLS--WGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp -HHHHHHHH--CSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSH
T ss_pred ChhhhhhHh--hcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCH
Confidence 2223333 44589999999999999999887432221 22334555555554443
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=5.6e-05 Score=82.57 Aligned_cols=173 Identities=14% Similarity=0.181 Sum_probs=95.0
Q ss_pred CCCcc-cchhhH-HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHH
Q 000780 187 SNGLV-GLNSRI-EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQK 264 (1288)
Q Consensus 187 ~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 264 (1288)
.++|+ |.+... ..+.++... . ...+.+.|+|..|+|||+||+++++.....-....|+... ....
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~-~-~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-----------~~~~ 83 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAG-P-VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-----------SPLL 83 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-----------HhHH
Confidence 44555 554443 444444432 1 3456788999999999999999998764432334444311 0000
Q ss_pred HHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCC-CCCc-EEEEEcCChhHHh-----
Q 000780 265 QMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQF-GQGS-RIVVTTRDKRVLE----- 335 (1288)
Q Consensus 265 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~-~~gs-rIivTTR~~~v~~----- 335 (1288)
.+ .. ....-++|+||++.. .+.+.+...+... ..+. .||+|++......
T Consensus 84 ~~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 00 112337889999643 2222333222211 2333 3666666432211
Q ss_pred ---hhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHhhhc
Q 000780 336 ---KFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 398 (1288)
Q Consensus 336 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 398 (1288)
.+. ....++++++++++-.+++.+.+-.... .--.+..+.+++...|++..+..+-..+
T Consensus 142 L~sr~~--~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLG--WGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHh--cCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 111 2368899999998877777654422111 1223456778888889988777665443
No 98
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=6.6e-05 Score=88.03 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=109.3
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc---eeEEeeecccccccCCCh
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE---GSCFVSDVRGNSETAGGL 259 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~---~~~~~~~~~~~~~~~~~l 259 (1288)
.|....++||-+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-. ..|..+ ..-
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C---------~sC 81 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC---------TSC 81 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC---------cHH
Confidence 34566789999999999998887532 2346789999999999999999986543211 011110 000
Q ss_pred HHHHHHHHhhhcC-ccccccCCCchhHHHHH-----HhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEE-EcCC
Q 000780 260 EHLQKQMLSTTLS-EKLEVAGPNIPHFTKER-----VRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVV-TTRD 330 (1288)
Q Consensus 260 ~~l~~~ll~~l~~-~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIiv-TTR~ 330 (1288)
..+.......+.. ......+.+..+.+.+. ..++.-++|+|+++... .++.|+..+........+|. ||..
T Consensus 82 ~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~ 161 (484)
T PRK14956 82 LEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161 (484)
T ss_pred HHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCCh
Confidence 0111100000000 00000000001111111 23456689999997543 47777776654334455454 4444
Q ss_pred hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 331 KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 331 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
..+.....+ ....|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+-
T Consensus 162 ~kI~~TI~S-RCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 162 HKIPETILS-RCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhccHHHHh-hhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 444333321 3457999999999998888876543221 1223457889999999874
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=8.5e-05 Score=90.95 Aligned_cols=192 Identities=13% Similarity=0.136 Sum_probs=109.8
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....++||-+.-++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..... . ...++.-...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~------~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T------ATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C------CCCCCCCHHH
Confidence 4566789999999999998887532 34557899999999999999999865332100 0 0001111111
Q ss_pred HHHHhhhcCccccccCC--Cch---hHHHHH-----HhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh
Q 000780 264 KQMLSTTLSEKLEVAGP--NIP---HFTKER-----VRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~~--~~~---~~l~~~-----l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~ 331 (1288)
+++...-..+-...+.. .-. +.+.+. ..+++-++|||+++... ..+.|+..+.......++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 11111000000000000 000 111111 23456689999997654 4667766665544566666555544
Q ss_pred -hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 332 -RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 332 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
.+.....+ ....|.++.++.++..+.+.+.+-..+.. ...+....|++.++|.+-.
T Consensus 160 ~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 160 QKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRD 216 (647)
T ss_pred cccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 44433222 35789999999999999988765322211 1233467889999998753
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.00 E-value=8.6e-05 Score=81.09 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=92.3
Q ss_pred CCcc-cchh-hHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHH
Q 000780 188 NGLV-GLNS-RIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQ 265 (1288)
Q Consensus 188 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 265 (1288)
++|+ |-+. .+..+.++... ...+.+.|+|+.|+|||+||+++++....+-..+.|+.. .. . ....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~---~----~~~~-- 88 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DK---R----AWFV-- 88 (235)
T ss_pred cccccCccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HH---H----hhhh--
Confidence 3444 6332 23444444332 334678999999999999999999977655444556541 10 0 0000
Q ss_pred HHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh---HHHH----HHHhccCCCCCC-cEEEEEcCCh------
Q 000780 266 MLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV---GQLK----RLIGELDQFGQG-SRIVVTTRDK------ 331 (1288)
Q Consensus 266 ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~----~l~~~l~~~~~g-srIivTTR~~------ 331 (1288)
..+.+.+.. --++++||+... .+|+ .+..... ..| .++|+||+..
T Consensus 89 ------------------~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 89 ------------------PEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred ------------------HHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCc
Confidence 011111111 237899999543 2232 2222211 123 3799998755
Q ss_pred ---hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 332 ---RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 332 ---~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
.+...+. ...+++++++++++-.+++.+++.... -.--++...-+++.+.|..-++
T Consensus 148 ~~~~L~SRl~--~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 148 GLPDLASRLD--WGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred ccHHHHHHHh--CCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHH
Confidence 2223332 346899999999999999887664321 1122345666666666654333
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.00 E-value=7.6e-05 Score=78.78 Aligned_cols=161 Identities=13% Similarity=0.172 Sum_probs=94.6
Q ss_pred HHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc---------------------cceeEEeeecccccccCC
Q 000780 199 QIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEGSCFVSDVRGNSETAG 257 (1288)
Q Consensus 199 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~ 257 (1288)
.+.+.+..+ .-...+.++|+.|+||||+|+.+.+.+-.. +....++... ... .
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~-~ 76 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS-I 76 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc-C
Confidence 344455432 234678899999999999999999876432 1111122100 000 1
Q ss_pred ChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHH
Q 000780 258 GLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVL 334 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~ 334 (1288)
+.+.+. ++...+... -..+.+-++|+|+++... ..+.++..+....+.+.+|++|++. .+.
T Consensus 77 ~~~~i~-~i~~~~~~~---------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 77 KVDQVR-ELVEFLSRT---------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred CHHHHH-HHHHHHccC---------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 111111 111111100 012345688999986543 3666776666555667777777654 333
Q ss_pred hhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 335 EKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 335 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
....+ ....+++.+++.++..+.+.+.. . ..+.+..+++.++|.|..
T Consensus 141 ~~i~s-r~~~~~~~~~~~~~~~~~l~~~g-----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 141 PTIRS-RCQVLPFPPLSEEALLQWLIRQG-----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHh-hcEEeeCCCCCHHHHHHHHHHcC-----C---CHHHHHHHHHHcCCCccc
Confidence 33222 34689999999999999988761 1 134578999999998853
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.99 E-value=0.00016 Score=84.96 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=111.8
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc----cc-----------------
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE----FE----------------- 241 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----F~----------------- 241 (1288)
.|.....++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.++..+... +.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3455678999999999999988653 234677899999999999999999875422 10
Q ss_pred eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCC
Q 000780 242 GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFG 319 (1288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 319 (1288)
...++... .. .+... .+++...+... -..+++-++|+|+++.. ...+.++..+....
T Consensus 87 ~~~~~~~~----~~-~~~~~-~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 87 DVIEIDAA----SN-NGVDD-IREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred CEEEeecc----cc-CCHHH-HHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCc
Confidence 01111100 00 11111 11121111100 01233458889998654 44666666665545
Q ss_pred CCcEEEEEcCChh-HHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHH
Q 000780 320 QGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 320 ~gsrIivTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
+...+|++|.+.. +...... ....+++++++.++..+.+...+-..+... ..+.+..+++.++|.|..+...
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHH
Confidence 5667677765543 3333321 345789999999999988887664332211 1345778889999988655443
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=0.00021 Score=85.44 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=96.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhccc--ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
...+.|+|..|.|||+|++++++.+.... ..++|+. ...+...+...+.... .....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHH
Confidence 35688999999999999999999765432 2334443 2334444444432210 011334444
Q ss_pred HhcceEEEEeccCCChH----HHHHHHhccCC-CCCCcEEEEEcCCh---------hHHhhhCCccceEEEcCCCCHHHH
Q 000780 290 VRRMKLLIVLDDVNEVG----QLKRLIGELDQ-FGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEEA 355 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea 355 (1288)
++ ..-+|||||+.... ..+.+...+.. ...|..||+|+... .+...+. ..-++++++++.++.
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~--~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN--MGLSIAIQKLDNKTA 280 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh--CCceeccCCcCHHHH
Confidence 44 34578899995432 12233222211 13455788886533 2222222 345788999999999
Q ss_pred HHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHh
Q 000780 356 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLG 395 (1288)
Q Consensus 356 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 395 (1288)
.+++.+++-.......-.++...-|++.+.|.|-.+.-+.
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9999988743221112335678889999999987666544
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00012 Score=86.98 Aligned_cols=180 Identities=15% Similarity=0.222 Sum_probs=110.0
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc---------------------cce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~ 242 (1288)
|....++||-+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. +..
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 4566789999999998888886542 34578899999999999999998754211 112
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCC
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQ 320 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~ 320 (1288)
++.+.. +.. .++.++. ++....... -..+++=++|+|+++... ..+.|+..+....+
T Consensus 87 v~eida----as~-~~vddIR-~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 87 VIEIDA----ASN-TSVDDIK-VILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEEec----ccC-CCHHHHH-HHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 222211 011 2222222 121111000 012345579999997543 36677766665556
Q ss_pred CcEEEEEc-CChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 321 GSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 321 gsrIivTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
..++|++| ..+.+.....+ ....+++..++.++..+.+...+...+.. -..+....|++.++|.+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~S-Rc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIIS-RCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHHH-hheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 67666555 43444443322 45689999999999999988876443321 123346788888888764
No 105
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=7.8e-05 Score=80.52 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=82.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
.+.+.|||.+|+|||+|++.++.... ..|+.. ..+...+.. .+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~--------------------~~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAAN--------------------AAA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHH--------------------hhh
Confidence 46789999999999999999887532 224431 011111111 111
Q ss_pred cceEEEEeccCCC----hHHHHHHHhccCCCCCCcEEEEEcCC---------hhHHhhhCCccceEEEcCCCCHHHHHHH
Q 000780 292 RMKLLIVLDDVNE----VGQLKRLIGELDQFGQGSRIVVTTRD---------KRVLEKFRGEEKKIYRVNGLEFEEAFEH 358 (1288)
Q Consensus 292 ~k~~LlVLDdv~~----~~~~~~l~~~l~~~~~gsrIivTTR~---------~~v~~~~~~~~~~~~~l~~L~~~ea~~L 358 (1288)
+ -+|++||++. .+.+-.+..... ..|..||+|++. +++...+. ...+++++++++++-.++
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~--~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLK--AATVVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHh--CCceeecCCCCHHHHHHH
Confidence 1 2788899953 233333333322 346779998873 23333333 456899999999999999
Q ss_pred HhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 359 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 359 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
+.+.+-.... .--+++..-|++.+.|..-++.
T Consensus 162 L~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 162 IFKLFADRQL--YVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHH
Confidence 9988743211 1223456667777666655444
No 106
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.95 E-value=5.3e-05 Score=89.12 Aligned_cols=175 Identities=22% Similarity=0.315 Sum_probs=98.1
Q ss_pred CCCCcccchhhHHHHHHhhccC----------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccccc
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMD----------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET 255 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~ 255 (1288)
...++.|++..++++.+.+... .-...+-|.++|++|+|||++|++++++....|-. +. .
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~---v~-~------ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR---VV-G------ 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE---ee-h------
Confidence 3457889999999998876321 00235668899999999999999999976543211 11 0
Q ss_pred CCChHHHHHHHHhhhcCccccccCCCch-hHHHHHHhcceEEEEeccCCCh-------------HH---HHHHHhccCCC
Q 000780 256 AGGLEHLQKQMLSTTLSEKLEVAGPNIP-HFTKERVRRMKLLIVLDDVNEV-------------GQ---LKRLIGELDQF 318 (1288)
Q Consensus 256 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~~~ 318 (1288)
..+..... +. ..... ..+...-...+.+|+||+++.. +. +..++..+...
T Consensus 199 ----~~l~~~~~---g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 ----SELVQKFI---GE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ----HHHhHhhc---cc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 11111110 00 00000 1122222345689999999653 11 22333333222
Q ss_pred --CCCcEEEEEcCChhHHhh-hC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHhhhcCC
Q 000780 319 --GQGSRIVVTTRDKRVLEK-FR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 319 --~~gsrIivTTR~~~v~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~Gl 387 (1288)
..+.+||.||...+.... .- +..+..++++..+.++..++|..++.+..... .++ ..+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 235567777765433221 11 01356799999999999999998875433222 223 4555556554
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=0.00012 Score=79.90 Aligned_cols=148 Identities=14% Similarity=0.248 Sum_probs=85.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
...+.|+|..|+|||.||+++++.+..+-..++|+.. .++.... ..+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----------~~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----------AELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----------HHHHhhh-----------------HHHHHhhh
Confidence 3678899999999999999999877655455666641 1111110 12233333
Q ss_pred cceEEEEeccCCCh---HHHHH-HHhccCC-CCCCcEEEEEcCChhH---------HhhhCCccceEEEcCCCCHHHHHH
Q 000780 292 RMKLLIVLDDVNEV---GQLKR-LIGELDQ-FGQGSRIVVTTRDKRV---------LEKFRGEEKKIYRVNGLEFEEAFE 357 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~---~~~~~-l~~~l~~-~~~gsrIivTTR~~~v---------~~~~~~~~~~~~~l~~L~~~ea~~ 357 (1288)
+-. ++|+||+... .+|+. +...+.. ...|.+||+|++...- ...+. ...+++++++++++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~--~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLT--LALVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHh--cCeeeecCCCCHHHHHH
Confidence 333 6788999532 23322 3322221 1346778998875321 11121 23578999999999999
Q ss_pred HHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 358 HFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 358 Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
++..++..... .--.+...-+++.+.|-.-++.
T Consensus 174 il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 174 ALQLRASRRGL--HLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 99866643221 1113455666666666544333
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=3e-07 Score=107.30 Aligned_cols=182 Identities=23% Similarity=0.204 Sum_probs=104.5
Q ss_pred CccccccCcccEEEcccCcCccccccccccc-cccceeeecCcc---------CCCCcchhhhhccccceeecccccCcc
Q 000780 713 PSSIECLTDLEVLDLRGCKRLKRISTSFCKL-RSLVTLILLGCL---------NLEHFPEILEKMEHLKRIYSDRTPITE 782 (1288)
Q Consensus 713 p~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l-~~L~~L~L~~~~---------~~~~~p~~l~~l~~L~~L~l~~~~i~~ 782 (1288)
|-+|..+..|+.|.|.+|.+.. .-. +..+ ..|++|.-.+.. ..+.+...+. -..|...+.++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~G-L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKG-LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhh-hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHHh
Confidence 5567778888888888887433 111 1111 234444322100 0011111110 1246666777788877
Q ss_pred cCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccccccCC
Q 000780 783 LPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGL 862 (1288)
Q Consensus 783 lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 862 (1288)
+..++.-++.|+.|+|++|++...- .+..++.|++|+++.|.+..+|..-..-..|+.|.+++|...+-. .+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~---gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR---GIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh---hHHhh
Confidence 7777777788888888888766532 566777788888888877777654322233777777776643321 13455
Q ss_pred CCCcEEEecCCCCCCCc--hhhcCCCCCcEEEccCCCCccCc
Q 000780 863 SAMGLLHISDYAVREIP--QEIAYLSSLEILYLSGNNFESLP 902 (1288)
Q Consensus 863 ~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp 902 (1288)
.+|+.||+++|-+.+.. ..+..+..|..|.|.||.+..-|
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 66666666666655421 12345566666666666665444
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00012 Score=88.13 Aligned_cols=196 Identities=13% Similarity=0.096 Sum_probs=108.0
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. ... .+--..
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r--l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~~-----Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK--LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GDC-----CNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CCC-----CcccHH
Confidence 35567789999999999999886542 346788999999999999999998763210 100 000 011111
Q ss_pred HHHHHhhhcCccccccCC--CchhHHH---HH------HhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEc-
Q 000780 263 QKQMLSTTLSEKLEVAGP--NIPHFTK---ER------VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT- 328 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~~--~~~~~l~---~~------l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTT- 328 (1288)
.+.+.......-...++. ...+.++ +. ..++| ++|+|+++.. .....|+..+........+|++|
T Consensus 79 Cr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~K-VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYK-VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcE-EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 111111100000000000 0001111 11 12334 5999999763 34566666554434455565555
Q ss_pred CChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch-hHHHH
Q 000780 329 RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL-VLEVL 394 (1288)
Q Consensus 329 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 394 (1288)
....+.....+ ....+++.+++.++....+...+-..+.. -..+.+..+++.++|.+- |+..+
T Consensus 158 ~~~KLl~TI~S-Rcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 158 EFQKIPLTIIS-RCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred ChHhhhHHHHh-hhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 43344333221 34589999999999998888765332211 113346788888888653 44433
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00017 Score=88.12 Aligned_cols=196 Identities=15% Similarity=0.164 Sum_probs=108.1
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....++||-+.-++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+-..=... . ........+.-...
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~---~~~~~~pCg~C~~C 84 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--Q---GGITATPCGVCQAC 84 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--c---cCCCCCCCCccHHH
Confidence 456678999998889999988764 2346778999999999999999987653210000 0 00000001111111
Q ss_pred HHHHhhhcCccccccC--CCchhHHHHHH--------hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCC-
Q 000780 264 KQMLSTTLSEKLEVAG--PNIPHFTKERV--------RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRD- 330 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~--~~~~~~l~~~l--------~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~- 330 (1288)
+.+...-..+-...+. ..-.+.+++.+ .++.-++|||+|+... ..+.|+..+.......++|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 1111100000000000 00011222222 1234578999997654 466777666544455566655543
Q ss_pred hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 331 KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 331 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
..+.....+ ....++++.++.++..+.+.+.+-..+... ..+....|++.++|.+-
T Consensus 165 ~kil~TIlS-Rc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR 220 (618)
T PRK14951 165 QKVPVTVLS-RCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMR 220 (618)
T ss_pred hhhhHHHHH-hceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 344333221 456899999999999998887664332211 23446788888888764
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00016 Score=85.47 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=109.5
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc--cceeEEeeecccccccCCChH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE--FEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
.|....+++|-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+... +...-|.....+. .+.-
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~--~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c 84 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGEC 84 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC--cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCC
Confidence 35566789999998999988886532 23558899999999999999999876432 1111111000000 1111
Q ss_pred HHHHHHHhhhcCccccccC-----CCchhHHHHHH-----hcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEc
Q 000780 261 HLQKQMLSTTLSEKLEVAG-----PNIPHFTKERV-----RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT 328 (1288)
Q Consensus 261 ~l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTT 328 (1288)
..-+++.......-...++ .+-...+.+.+ .+++-++|+|+++.. +.++.++..+....+.+.+|++|
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 1111111110000000000 00001112222 234558899998754 35667776666555666766555
Q ss_pred -CChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 329 -RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 329 -R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
+...+...... ....+++.++++++..+.+...+-..+. .-..+.+..+++.++|.+-
T Consensus 165 ~~~~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 165 TELHKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred CChHHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 44444433211 3457899999999998888776532211 1223457889999999774
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.85 E-value=0.00017 Score=89.57 Aligned_cols=205 Identities=17% Similarity=0.110 Sum_probs=108.3
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc--cc---ceeEEee-ecccccccCC
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH--EF---EGSCFVS-DVRGNSETAG 257 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~F---~~~~~~~-~~~~~~~~~~ 257 (1288)
|...+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+. +.... . .
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~-~ 223 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--R-W 223 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--c-C
Confidence 45567899999999988877743 33567999999999999999999875432 11 1122221 11100 0 1
Q ss_pred ChHHHHHHHH---------------hhhcCcc-------------ccccC-----CCchhHHHHHHhcceEEEEeccCCC
Q 000780 258 GLEHLQKQML---------------STTLSEK-------------LEVAG-----PNIPHFTKERVRRMKLLIVLDDVNE 304 (1288)
Q Consensus 258 ~l~~l~~~ll---------------~~l~~~~-------------~~~~~-----~~~~~~l~~~l~~k~~LlVLDdv~~ 304 (1288)
+...+...++ ...+... .-.+. ...+..+.+.++++++.++-|+.|.
T Consensus 224 d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~ 303 (615)
T TIGR02903 224 DPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDP 303 (615)
T ss_pred CHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceecc
Confidence 1111111111 1101000 00011 1123556667777777777665554
Q ss_pred hH--HHHHHHhccCCCCCCcEEEE--EcCChhH-HhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHH
Q 000780 305 VG--QLKRLIGELDQFGQGSRIVV--TTRDKRV-LEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRS 379 (1288)
Q Consensus 305 ~~--~~~~l~~~l~~~~~gsrIiv--TTR~~~v-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~ 379 (1288)
.+ .|+.+...+....+...|+| ||++... ...+.. ....+.+.+++.+|.++++.+.+-..... --.+..+.
T Consensus 304 ~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~ 380 (615)
T TIGR02903 304 DDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEEL 380 (615)
T ss_pred CCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHH
Confidence 32 25555444444444444555 5665432 222211 23467889999999999998866322111 11234455
Q ss_pred HHhhhcCCchhHHHHhhh
Q 000780 380 VVSYTKGNPLVLEVLGSS 397 (1288)
Q Consensus 380 i~~~~~GlPLal~~lg~~ 397 (1288)
|.+++..-+-|+..++..
T Consensus 381 L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 381 IARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHCCCcHHHHHHHHHHH
Confidence 555554445555555433
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.1e-07 Score=95.71 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=86.0
Q ss_pred ccceeeecCccCCC-CcchhhhhccccceeecccccCc-ccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhh
Q 000780 745 SLVTLILLGCLNLE-HFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILA 822 (1288)
Q Consensus 745 ~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l 822 (1288)
.|++|||+...... .+...+..+.+|+.|.+.++.+. .+-..+..-.+|+.|+++.|+-.....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 46677776543322 23334555666666666666554 233334455566666666655332111
Q ss_pred cccCCccCCcccccCCCCcEEEcCCCCCCCcccccc-ccCCCCCcEEEecCCCC----CCCchhhcCCCCCcEEEccCCC
Q 000780 823 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYAV----REIPQEIAYLSSLEILYLSGNN 897 (1288)
Q Consensus 823 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~l----~~lp~~l~~l~~L~~L~Ls~n~ 897 (1288)
+.-.+.+++.|..|+|+.|......-... ..--+.|+.|+|+++.- ..+..-...+|+|..|||++|.
T Consensus 252 -------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 252 -------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred -------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 01113344555556666655443321111 11224455566655521 1122223456777777777763
Q ss_pred -Cc-cCchhhhcCCCCCEEEecCCCCCCccC----CcCccccEEEeeCCC
Q 000780 898 -FE-SLPAIIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCK 941 (1288)
Q Consensus 898 -l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~l~~c~ 941 (1288)
++ ..-..+..++.|++|.++.|..+..-. ...|+|.+|++.+|-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 22 223445667777777777775431100 123456666666654
No 114
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.82 E-value=0.00017 Score=83.28 Aligned_cols=152 Identities=15% Similarity=0.222 Sum_probs=89.0
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| .++. ... .....+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~i 84 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDFV 84 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHHH
Confidence 3456678999999999999988753 3356777899999999999999998764322 2222 111 112222
Q ss_pred HHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh---HHHHHHHhccCCCCCCcEEEEEcCChhH-HhhhC
Q 000780 263 QKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV---GQLKRLIGELDQFGQGSRIVVTTRDKRV-LEKFR 338 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsrIivTTR~~~v-~~~~~ 338 (1288)
...+...... ..+...+-++|+||++.. +..+.+...+.....+.++|+||..... .....
T Consensus 85 ~~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 85 RNRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 2111110000 001123457889999755 2233333334444567788888865432 22221
Q ss_pred CccceEEEcCCCCHHHHHHHHhh
Q 000780 339 GEEKKIYRVNGLEFEEAFEHFCN 361 (1288)
Q Consensus 339 ~~~~~~~~l~~L~~~ea~~Lf~~ 361 (1288)
+ ....+.++..+.++..+++..
T Consensus 150 s-R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 S-RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred h-hceEEEeCCCCHHHHHHHHHH
Confidence 1 334677888888888777654
No 115
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=1.7e-05 Score=66.29 Aligned_cols=56 Identities=29% Similarity=0.352 Sum_probs=24.9
Q ss_pred ceeecCCCccccccCc-cccccCcccEEEcccCcCccccccccccccccceeeecCc
Q 000780 699 VTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC 754 (1288)
Q Consensus 699 L~~L~L~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~ 754 (1288)
|++|++++|.++.+|. .+..+++|++|++++|.+...-|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444442 3344444444444444433333334444444444444443
No 116
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00019 Score=86.81 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=106.6
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc---------------------cce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~ 242 (1288)
|....++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. |..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 4566789999999999999997542 34567899999999999999999865321 111
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCC
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQ 320 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~ 320 (1288)
...+... .. .++..+. +++...... -..++.-++|+|+|+.. +..+.|+..+....+
T Consensus 90 ~~eidaa----s~-~~v~~iR-~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 90 LFEVDAA----SR-TKVEDTR-ELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEEccc----cc-CCHHHHH-HHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 2222110 01 2222221 122211100 01234457889999764 346666666655455
Q ss_pred CcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 321 GSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 321 gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
..++|++|.+. .+.....+ ....+++++++.++..+.+...+-..+... ..+....|++.++|-+.
T Consensus 149 ~~~fIlattd~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR 215 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLS-RCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVR 215 (509)
T ss_pred CeEEEEEECChHhchHHHHH-HhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 67776655443 33322211 345788999999988777665543222211 12345678888888774
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00021 Score=87.13 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=106.5
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc---------------------ce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF---------------------EG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~ 242 (1288)
|....++||-+.-++.+..++..+. -.+.+.++|+.|+||||+|+.++..+.... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR--LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC--CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 4556789999999999999887532 345678999999999999999998653221 11
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCC
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQ 320 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~ 320 (1288)
.+.+.. ... .++..+. +++..... .-..+++-++|+|+++... ..+.|+..+.....
T Consensus 90 ~~ei~~----~~~-~~vd~ir-~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 90 LIEVDA----ASN-TQVDAMR-ELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eeEeec----ccc-CCHHHHH-HHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 111110 000 1111111 12111100 0012455689999998654 36666666655445
Q ss_pred CcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 321 GSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 321 gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
...+|++|.+. .+.....+ ....++++.++.++..+.+.+.+-..+.. ...+....|++.++|.+-
T Consensus 149 ~~~fIL~t~d~~kil~tI~S-Rc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLS-RCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred CEEEEEEeCChhhCchhHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 66666655443 33322111 34578999999999998887755322211 123345778889999774
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00045 Score=73.38 Aligned_cols=264 Identities=18% Similarity=0.226 Sum_probs=144.8
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCC--CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDS--SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
.|....+|||-+.-.++|.-.+.... +...--|.++|++|.||||||.-+++.+..++.... ...-+++.++.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----Gp~leK~gDla 95 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----GPALEKPGDLA 95 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----cccccChhhHH
Confidence 35566789999998888877775432 244667899999999999999999998765532211 11111211221
Q ss_pred HHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChHH-HHHH-HhccCC--------CCCCcEE------
Q 000780 261 HLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVGQ-LKRL-IGELDQ--------FGQGSRI------ 324 (1288)
Q Consensus 261 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~-~~~l-~~~l~~--------~~~gsrI------ 324 (1288)
. ++..+ +... ++.+|.+..... .+++ -+.... .++++|.
T Consensus 96 a----iLt~L--------------------e~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 96 A----ILTNL--------------------EEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred H----HHhcC--------------------CcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1 12111 1112 344555533221 1111 111111 2444443
Q ss_pred -----EEEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHhhhcC
Q 000780 325 -----VVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLC 399 (1288)
Q Consensus 325 -----ivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 399 (1288)
=.|||.-.+...+...-.-+.+++.-+.+|-.+...+.|..-+. +-.++-+.+|++...|-|--..-+-+.
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrR-- 226 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRR-- 226 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHH--
Confidence 36888765444332112346788888999999999887732111 222345889999999999533222211
Q ss_pred CCCHHHHHHHhhhhhhcCccc-hhhHHHHHHhhhcCCChhhHHHhhhcccccC--CCChhHHHHHhhhh---hhhhhH-H
Q 000780 400 LKRKSHWGKVLHDLNRICESE-IHDIYDILKISFNKLTPRVKSIFLDIACFFE--GEDKDFVASILDDS---ESDVLD-I 472 (1288)
Q Consensus 400 ~~~~~~w~~~l~~l~~~~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~--~~~~~~~~~~l~~~---~~~~l~-~ 472 (1288)
+.++..+... ...+.+ .+...+.|.+-=.+|+...++.+..+.-.+. +...+.+...+... .++.++ -
T Consensus 227 ---VRDfa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPy 301 (332)
T COG2255 227 ---VRDFAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPY 301 (332)
T ss_pred ---HHHHHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHH
Confidence 1122221110 000011 1123555666666788888888877765553 34456666555443 222222 3
Q ss_pred hhcCcCeeEe-CCE
Q 000780 473 LIDKSLVSIS-GNF 485 (1288)
Q Consensus 473 L~~~sLi~~~-~~~ 485 (1288)
|++.|+|+.. .++
T Consensus 302 Liq~gfi~RTpRGR 315 (332)
T COG2255 302 LIQQGFIQRTPRGR 315 (332)
T ss_pred HHHhchhhhCCCcc
Confidence 8999999887 444
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.77 E-value=0.00022 Score=91.21 Aligned_cols=172 Identities=15% Similarity=0.198 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhccccccccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc-----
Q 000780 165 LVNKIVEDVLKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE----- 239 (1288)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----- 239 (1288)
.+++...+...+.. +..-+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++...
T Consensus 164 ~l~~~~~~l~~~~r-----~~~l~~~igr~~ei~~~~~~L~~~~---~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 164 ALEKYTVDLTEKAK-----NGKIDPLIGREDELERTIQVLCRRK---KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred HHHHHhhhHHHHHh-----cCCCCcccCcHHHHHHHHHHHhcCC---CCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 44444444444332 2344579999999999999887642 3345799999999999999999987442
Q ss_pred c-ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh-----------HH
Q 000780 240 F-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV-----------GQ 307 (1288)
Q Consensus 240 F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~ 307 (1288)
+ ...+|..+. ..+.... ...+ .....+...+.+.-..++++|++|+++.. +.
T Consensus 236 l~~~~~~~~~~----------~~l~a~~-~~~g-----~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~ 299 (731)
T TIGR02639 236 LKNAKIYSLDM----------GSLLAGT-KYRG-----DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDA 299 (731)
T ss_pred hcCCeEEEecH----------HHHhhhc-cccc-----hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHH
Confidence 1 233443221 1111000 0000 00000011222211345789999998522 12
Q ss_pred HHHHHhccCCCCCCcEEEEEcCChhHH------hhhCCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 308 LKRLIGELDQFGQGSRIVVTTRDKRVL------EKFRGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 308 ~~~l~~~l~~~~~gsrIivTTR~~~v~------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
-+.+.+.+.. + .-++|-+|...+.. ..+.. ....++++.++.++..+++....
T Consensus 300 ~~~L~~~l~~-g-~i~~IgaTt~~e~~~~~~~d~al~r-Rf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 300 SNLLKPALSS-G-KLRCIGSTTYEEYKNHFEKDRALSR-RFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHHhC-C-CeEEEEecCHHHHHHHhhhhHHHHH-hCceEEeCCCCHHHHHHHHHHHH
Confidence 2333333321 2 23444444432211 11111 23478999999999999998644
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00024 Score=83.67 Aligned_cols=182 Identities=13% Similarity=0.220 Sum_probs=106.5
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc--------cceeEEeeecccccc
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE--------FEGSCFVSDVRGNSE 254 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------F~~~~~~~~~~~~~~ 254 (1288)
.|....+++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...++-.+ . ..
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~ 86 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-AS 86 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-cc
Confidence 3455678999999999999998753 234678899999999999999998876431 222222110 0 00
Q ss_pred cCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEc-CCh
Q 000780 255 TAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTT-RDK 331 (1288)
Q Consensus 255 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTT-R~~ 331 (1288)
. .++..+. ++..+.... -..+++-++|+|+++... .++.++..+........+|++| +..
T Consensus 87 ~-~~~~~i~-~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 87 N-NSVDDIR-NLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred C-CCHHHHH-HHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 0 1122221 222111000 011234479999986543 3666655544333445555555 333
Q ss_pred hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 332 RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 332 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
.+...... ....++.+++++++....+...+...+.. -..+.+..++..++|.+-
T Consensus 150 kl~~~l~s-r~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 150 KIIPTILS-RCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred cCCHHHHh-cceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 33322211 34579999999999998888766443321 123457778888888654
No 121
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=6.9e-07 Score=104.39 Aligned_cols=128 Identities=20% Similarity=0.135 Sum_probs=96.9
Q ss_pred CceeecCCCccccccCccccccCcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeeccc
Q 000780 698 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 777 (1288)
Q Consensus 698 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 777 (1288)
.|...+.++|.+..+..++.-++.|+.|||++|++...- .+..|++|++|||+.|.. ..+|..-..--+|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh-ccccccchhhhhheeeeecc
Confidence 456667789999999889999999999999999865543 477889999999998653 34443322222389999999
Q ss_pred ccCcccCcccCCCCCCcEEEeccCCCCCCC-CCcCCCCchHHHHhhcccCCcc
Q 000780 778 TPITELPSSFENLPGLEVLFVEDCSKLDNL-PDNIGSLEYLYYILAAASAISQ 829 (1288)
Q Consensus 778 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~~~~l~~ 829 (1288)
|.++.+-. +.+|.+|+.|++++|-+.+.- -..++.|..|+.|+|.+|.+.-
T Consensus 242 N~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 99987764 788999999999998766421 1235677889999999997763
No 122
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.75 E-value=0.001 Score=80.42 Aligned_cols=156 Identities=16% Similarity=0.161 Sum_probs=91.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccce--eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG--SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 288 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 288 (1288)
....+.|+|.+|+|||+||+++++.+..++.. +.|+. ...+..++...+... ....+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~ 207 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKE 207 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHH
Confidence 34568899999999999999999988776532 33443 122233333332211 1133444
Q ss_pred HHhcceEEEEeccCCChH----HHHHHHhccCC-CCCCcEEEEEcCChh-H--------HhhhCCccceEEEcCCCCHHH
Q 000780 289 RVRRMKLLIVLDDVNEVG----QLKRLIGELDQ-FGQGSRIVVTTRDKR-V--------LEKFRGEEKKIYRVNGLEFEE 354 (1288)
Q Consensus 289 ~l~~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gsrIivTTR~~~-v--------~~~~~~~~~~~~~l~~L~~~e 354 (1288)
.++ +.-+|||||++... ..+.+...+.. ...|..||+||.... . ...+. ...++++++.+.++
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~--~gl~v~i~~pd~~~ 284 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE--WGLTVDIEPPDLET 284 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc--CCeeEEecCCCHHH
Confidence 544 34488899995321 11222221111 123456888776431 1 11222 33579999999999
Q ss_pred HHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 355 AFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 355 a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
..+++...+-... ..--.++...|++.+.|..-.
T Consensus 285 r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 285 RIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHH
Confidence 9999998874322 122245677888888877553
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.73 E-value=0.0003 Score=82.84 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=92.3
Q ss_pred CCCCcccchhhHHHHHHhhccCC----------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccccc
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDS----------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET 255 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~ 255 (1288)
...++.|.+..++++.+.+...- -...+-|.++|++|.|||++|+++++.....|-. +.. +
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~~----s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VVG----S-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Eec----c--
Confidence 34567899999999988764210 0234568899999999999999999987655411 110 0
Q ss_pred CCChHHHHHHHHhhhcCccccccCCC-chhHHHHHHhcceEEEEeccCCChH----------------HHHHHHhccCCC
Q 000780 256 AGGLEHLQKQMLSTTLSEKLEVAGPN-IPHFTKERVRRMKLLIVLDDVNEVG----------------QLKRLIGELDQF 318 (1288)
Q Consensus 256 ~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~l~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~ 318 (1288)
.+......+ +.. +...+.......+.+|+||+++... .+..++..+..+
T Consensus 252 -----eL~~k~~Ge---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 252 -----ELIQKYLGD---------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred -----hhhhhhcch---------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 011111000 000 1122222334567889999874210 122333333322
Q ss_pred --CCCcEEEEEcCChhHHhhh-C--CccceEEEcCCCCHHHHHHHHhhhhcC
Q 000780 319 --GQGSRIVVTTRDKRVLEKF-R--GEEKKIYRVNGLEFEEAFEHFCNFAFK 365 (1288)
Q Consensus 319 --~~gsrIivTTR~~~v~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~ 365 (1288)
..+.+||+||...+..... - +..+..++++..+.++..++|..++.+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2356788888765444331 1 124668999999999999999987643
No 124
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=1.3e-05 Score=84.65 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCCCCcEEEecCCCCCCCc--hhhcCCCCCcEEEccCCCCccCc--hhhhcCCCCCEEEecCCCCCCccC
Q 000780 861 GLSAMGLLHISDYAVREIP--QEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLP 926 (1288)
Q Consensus 861 ~~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp 926 (1288)
.++++..+.+..|.+.+.. .....++.+-.|+|+.|++.+.. ..+..++.|..|.+++++....+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 3455666666666655432 23445677778888888887554 467788888888888888776665
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00049 Score=83.58 Aligned_cols=199 Identities=13% Similarity=0.115 Sum_probs=111.0
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-...... ....+.-...
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~----------~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT----------GEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC----------CCCCcccHHH
Confidence 455678899988888888888653 2346788999999999999999998653211000 0000000111
Q ss_pred HHHHhhhcCccccccC-----CCchhHHHHH-----HhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEcCC-
Q 000780 264 KQMLSTTLSEKLEVAG-----PNIPHFTKER-----VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD- 330 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~-----~~~~~~l~~~-----l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTTR~- 330 (1288)
+.+.......-...+. .+..+.+++. ..+++-+||+|+++.. +..+.|+..+........+|++|.+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 1111100000000000 0000111111 1345568999999765 3466666665543445556665554
Q ss_pred hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc-hhHHHHhhh
Q 000780 331 KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP-LVLEVLGSS 397 (1288)
Q Consensus 331 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~~ 397 (1288)
..+.....+ ....++++.++.++..+.+...+...... -..+.++.|++.++|.+ .|+..+...
T Consensus 160 ~kll~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 160 HKFPVTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhhhHHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 444433221 34578999999999998888766433211 12345778888888864 566665543
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00038 Score=85.84 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=107.5
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. .+. .
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p---------C~~--C 79 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP---------CQE--C 79 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc---------hhH--H
Confidence 3455678999999999999998754 23566789999999999999999986532100000000 000 0
Q ss_pred HHHHHhh---hcCccccccCCCchhHHHHHH-----hcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEE-EEcCCh
Q 000780 263 QKQMLST---TLSEKLEVAGPNIPHFTKERV-----RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIV-VTTRDK 331 (1288)
Q Consensus 263 ~~~ll~~---l~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIi-vTTR~~ 331 (1288)
....... +........+.+..+.+.+.. .+++-++|+|+++.. ..+..|+..+........+| +|++..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 0000000 000000000000011122221 245568899998754 34667776655444455555 454444
Q ss_pred hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch-hHHH
Q 000780 332 RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL-VLEV 393 (1288)
Q Consensus 332 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 393 (1288)
.+.....+ ....+++.+++.++..+.+...+-..+.. ...+.+..+++.++|-+- |+..
T Consensus 160 KLl~TI~S-Rcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 160 KIPLTILS-RVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred hhhHHHHh-hceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55433221 34689999999999998887755322211 112346788889988664 4443
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00079 Score=82.23 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=109.7
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....++||.+.-++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+....... . ...+.-..
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~---------~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A---------TPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C---------CcccccHH
Confidence 3456678999999999999998753 2345678999999999999999998654211000 0 00000000
Q ss_pred HHHHHhhhcC--ccccccC-----CCchhHHHHH-----HhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEc
Q 000780 263 QKQMLSTTLS--EKLEVAG-----PNIPHFTKER-----VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT 328 (1288)
Q Consensus 263 ~~~ll~~l~~--~~~~~~~-----~~~~~~l~~~-----l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTT 328 (1288)
.+.+...-.. .-...+. .+..+.+.+. ..+++=++|+|+++.. ...+.|+..+........+|++|
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 1111000000 0000000 0000111111 1234458899998754 34667766666545566655544
Q ss_pred -CChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch-hHHHH
Q 000780 329 -RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL-VLEVL 394 (1288)
Q Consensus 329 -R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 394 (1288)
....+.....+ ....+++..++.++..+.+.+.+-..+... ..+....|++.++|-+- |+..+
T Consensus 156 te~~kll~TI~S-Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 156 TEPEKVLPTIRS-RTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CChHhhHHHHHH-hceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44454443322 356899999999999888877654322211 13346778888888764 44443
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00059 Score=83.89 Aligned_cols=197 Identities=13% Similarity=0.130 Sum_probs=107.3
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc--cceeEEeeecccccccCCChHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE--FEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
|....++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|.....+. .+.-.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~ 85 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECE 85 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCH
Confidence 456678999999999999888653 234568899999999999999999866331 1111111110000 11111
Q ss_pred HHHHHHhhhcCccccccC--CCchhHH---HHHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEc-
Q 000780 262 LQKQMLSTTLSEKLEVAG--PNIPHFT---KERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTT- 328 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~--~~~~~~l---~~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTT- 328 (1288)
..+.+.......-...++ ..-.+.+ .+.+ .+++=++|+|+++... ..+.|+..+..-.+.+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 111111110000000000 0001111 1111 2334478999987653 3666666655444455555444
Q ss_pred CChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 329 RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 329 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
+...+...... ....+++..++.++....+.+.+-..+. .-..+.+..+++.++|..-
T Consensus 166 ~~~kLl~TI~S-Rc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATIAS-RCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHHHh-hceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 44444433221 4568999999999988888765532221 1123457788899998654
No 129
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00059 Score=86.69 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=107.0
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc---------------------
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE--------------------- 241 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--------------------- 241 (1288)
.|....++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-....
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPG 87 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCC
Confidence 34556789999999999999987532 3456789999999999999999987632110
Q ss_pred --eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCC
Q 000780 242 --GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQ 317 (1288)
Q Consensus 242 --~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~ 317 (1288)
.++++. . ... .++..+.+ +...+ ...-..+++=++|||+++... ..+.|+..+..
T Consensus 88 ~~dv~eid---a-as~-~~Vd~iR~-l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 88 SLDVTEID---A-ASH-GGVDDARE-LRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred CCcEEEec---c-ccc-CCHHHHHH-HHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 001110 0 000 11111111 11100 000122344578899997654 36666666655
Q ss_pred CCCCcEEEEEcC-ChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 318 FGQGSRIVVTTR-DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 318 ~~~gsrIivTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
....+.+|++|. ...+.....+ ....|++..++.++..+.+.+.+-..+.. ...+....|++.++|.+.
T Consensus 147 pP~~~~fIl~tt~~~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 147 PPEHLKFIFATTEPDKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCCeEEEEEeCChhhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 455666665554 4445443322 45689999999999888887754322211 123345778888888774
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.69 E-value=0.00043 Score=77.19 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhccc--ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 288 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 288 (1288)
....+.++|++|+||||+|+.+++.+...- ....++. + .-..+..... +.. ...+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~--------~~~~l~~~~~---g~~---------~~~~~~ 99 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V--------ERADLVGEYI---GHT---------AQKTRE 99 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e--------cHHHhhhhhc---cch---------HHHHHH
Confidence 456678999999999999999998653211 1111221 1 0011111111 000 011222
Q ss_pred HHhc-ceEEEEeccCCC----------hHHHHHHHhccCCCCCCcEEEEEcCChhHHh------hhCCccceEEEcCCCC
Q 000780 289 RVRR-MKLLIVLDDVNE----------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLE------KFRGEEKKIYRVNGLE 351 (1288)
Q Consensus 289 ~l~~-k~~LlVLDdv~~----------~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~------~~~~~~~~~~~l~~L~ 351 (1288)
.+.. ..-+|++|+++. .+.++.++..+......-.+|+++...+... .........++++.++
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC
Confidence 2211 134888999964 2346666666554333345555554332211 1111123568899999
Q ss_pred HHHHHHHHhhhhc
Q 000780 352 FEEAFEHFCNFAF 364 (1288)
Q Consensus 352 ~~ea~~Lf~~~af 364 (1288)
.+|-.+++.+.+.
T Consensus 180 ~~el~~Il~~~~~ 192 (261)
T TIGR02881 180 VEELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00054 Score=85.14 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=112.1
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....++||-+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+....... .....+....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~--i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~---------~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGR--VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP---------KGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccCHH
Confidence 34556789999999999988886532 345678999999999999999998763211000 0000111122
Q ss_pred HHHHHhhhcCccccccC--CCch---hHHHHHH-----hcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEcCC
Q 000780 263 QKQMLSTTLSEKLEVAG--PNIP---HFTKERV-----RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD 330 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~--~~~~---~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTTR~ 330 (1288)
.+.+......+-...+. ..-. +.+.+.+ ..++-++|+|+++.. +..+.|+..+....+...+|++|.+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 22222211110000000 0001 1111211 234568999998754 4466776665544456666666543
Q ss_pred -hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHH
Q 000780 331 -KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEV 393 (1288)
Q Consensus 331 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 393 (1288)
..+.....+ ....+++..++.++..+.+.+.+...+.. -..+.+..+++.++|.+..+..
T Consensus 160 ~~kll~tI~S-R~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 160 VHKVPATILS-RCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhhhHHHHh-ccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 334333221 34578899999999988888776433221 1234577889999998864443
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.68 E-value=0.0015 Score=77.97 Aligned_cols=157 Identities=19% Similarity=0.210 Sum_probs=88.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccc--eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
...+.|+|..|+|||+||+++++.+..+.. .++|+. ...+..++...+... ....+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 456889999999999999999998766543 234443 122233333332211 11334444
Q ss_pred HhcceEEEEeccCCChH---H-HHHHHhccCC-CCCCcEEEEEcCCh-hHHhhh----CC--ccceEEEcCCCCHHHHHH
Q 000780 290 VRRMKLLIVLDDVNEVG---Q-LKRLIGELDQ-FGQGSRIVVTTRDK-RVLEKF----RG--EEKKIYRVNGLEFEEAFE 357 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~~---~-~~~l~~~l~~-~~~gsrIivTTR~~-~v~~~~----~~--~~~~~~~l~~L~~~ea~~ 357 (1288)
+++ .-+|||||++... . .+.+...+.. ...|..||+|+... .....+ .+ .....+++++.+.++..+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 3478899996421 1 1222222211 12345678877542 222111 11 123468999999999999
Q ss_pred HHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 358 HFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 358 Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
++...+-.... .--+++...|++.+.|..-.
T Consensus 276 il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 276 ILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHH
Confidence 99887743221 12245567777777776543
No 133
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00052 Score=84.31 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=111.3
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-......- . +......+.-.-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~-~~~~~~cg~c~~C 92 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----G-GPTIDLCGVGEHC 92 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----C-CCccccCcccHHH
Confidence 456678999999999999998764 23456889999999999999999987643221000 0 0000001111111
Q ss_pred HHHHhhhcCcccccc--CCCchhHHH---HHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEc-CC
Q 000780 264 KQMLSTTLSEKLEVA--GPNIPHFTK---ERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTT-RD 330 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~--~~~~~~~l~---~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTT-R~ 330 (1288)
+.+......+-...+ ...-.+.++ +.+ ..++=++|+|+++... ..+.|+..+....+.+++|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111111000000000 000011111 111 1234468999996554 3666666555445566665544 44
Q ss_pred hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 331 KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 331 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
..+.....+ ....+++..++.++..+.+.+.+-..+.. -..+....|++.++|.+.-+.
T Consensus 173 ~kll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 173 RKVPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 444433322 45689999999999999988766433221 123457888999999875443
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.00061 Score=77.28 Aligned_cols=210 Identities=16% Similarity=0.189 Sum_probs=121.3
Q ss_pred cCCCCCcccchhhHHHHHHhhccC-CCCCceEEEEEecCCchHHHHHHHHHHHhhcccce--eEEeeecccccccCCChH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMD-SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG--SCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~l~ 260 (1288)
...+..++||+.++..+.+++... .....+.+-|.|.+|.|||.+...++.+....... ++++....- ....
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-----~~~~ 220 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL-----TEAS 220 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc-----cchH
Confidence 345678999999999999998652 12567888999999999999999999876554433 456643211 2233
Q ss_pred HHHHHHHhhh-cCccccccCCCchhHHHHHHhcc--eEEEEeccCCChHH--HHHHHhccCCC-CCCcEEEEEcCCh---
Q 000780 261 HLQKQMLSTT-LSEKLEVAGPNIPHFTKERVRRM--KLLIVLDDVNEVGQ--LKRLIGELDQF-GQGSRIVVTTRDK--- 331 (1288)
Q Consensus 261 ~l~~~ll~~l-~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~~~~~--~~~l~~~l~~~-~~gsrIivTTR~~--- 331 (1288)
.+...+...+ .....+..+.+..+.+.+..... -+|+|+|.++.... -..+...+.|- -+++|+|+.---.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 4555555543 11212222222234444444433 58999998865432 12222223332 3677766432110
Q ss_pred ---hHHhhhC---CccceEEEcCCCCHHHHHHHHhhhhcCCCC---CCchHHHHHHHHHhhhcCCchhHHHHhhhc
Q 000780 332 ---RVLEKFR---GEEKKIYRVNGLEFEEAFEHFCNFAFKENH---CPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 398 (1288)
Q Consensus 332 ---~v~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~---~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 398 (1288)
..+..+. .-....+..++-+.++-.++|..+.-.... .+...+-.|++++.-.|.+--|+.+.-+.+
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111111 113457788899999999999887632211 112344456666666677777776655443
No 135
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.66 E-value=0.00023 Score=77.35 Aligned_cols=149 Identities=16% Similarity=0.300 Sum_probs=87.5
Q ss_pred CCCCCcccchhhHHH---HHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 185 DSSNGLVGLNSRIEQ---IKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
..-.+.||-+..+.+ |.+++.. +....+.+||++|+||||||+.+...-+.+- ..|+.- +.+..+..+
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~d 205 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTND 205 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchHH
Confidence 333455555544322 3333333 5677788999999999999999998654431 334432 222233333
Q ss_pred HHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCC--ChHHHHHHHhccCCCCCCcEEEE--EcCChhHHh--
Q 000780 262 LQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVN--EVGQLKRLIGELDQFGQGSRIVV--TTRDKRVLE-- 335 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gsrIiv--TTR~~~v~~-- 335 (1288)
+.. +.++ ..-...+.++|..|.+|.|. +..|-+.+++. -..|.-++| ||.++...-
T Consensus 206 vR~-ife~--------------aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 206 VRD-IFEQ--------------AQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHH-HHHH--------------HHHHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhH
Confidence 322 2211 11122346778999999995 34455555544 245665554 777764321
Q ss_pred hhCCccceEEEcCCCCHHHHHHHHhh
Q 000780 336 KFRGEEKKIYRVNGLEFEEAFEHFCN 361 (1288)
Q Consensus 336 ~~~~~~~~~~~l~~L~~~ea~~Lf~~ 361 (1288)
.+- ....++.++.|+.++...++.+
T Consensus 268 aLl-SRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 268 ALL-SRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHH-hccceeEeccCCHHHHHHHHHH
Confidence 111 1456899999999999999877
No 136
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.64 E-value=7.5e-05 Score=84.48 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=60.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhc-ccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCC---C----c
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP---N----I 282 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~---~----~ 282 (1288)
.-+..+|+|++|+||||||+++|+.+.. +|+.++|+..+++.. ..+.++++++...+-....+.... . +
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4567889999999999999999997654 699999998765522 467788888864322111111000 0 0
Q ss_pred hhHHHHH-HhcceEEEEeccCCChH
Q 000780 283 PHFTKER-VRRMKLLIVLDDVNEVG 306 (1288)
Q Consensus 283 ~~~l~~~-l~~k~~LlVLDdv~~~~ 306 (1288)
.+..+.. -.+++++|++|++....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHH
Confidence 1111111 35789999999996543
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00086 Score=80.13 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=89.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccc--eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
..-+.|+|.+|+|||+||+++++.+....+ .++|+. ..++...+...+.... ...+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~~--------~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEGK--------LNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhccc--------HHHHHHH
Confidence 445899999999999999999998766543 344543 1233334433332111 1334444
Q ss_pred HhcceEEEEeccCCCh---H----HHHHHHhccCCCCCCcEEEEEcC-ChhHHhhh----CC--ccceEEEcCCCCHHHH
Q 000780 290 VRRMKLLIVLDDVNEV---G----QLKRLIGELDQFGQGSRIVVTTR-DKRVLEKF----RG--EEKKIYRVNGLEFEEA 355 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~---~----~~~~l~~~l~~~~~gsrIivTTR-~~~v~~~~----~~--~~~~~~~l~~L~~~ea 355 (1288)
.+.+.-+||+||++.. . .+-.+...+. ..|..||+||. .+.-...+ .+ ....++++++.+.+.-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 4444568999999642 1 1222222221 23457888874 43222211 10 1234789999999999
Q ss_pred HHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 356 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 356 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
.+++.+.+-.... .--.++...|++.+.|.--
T Consensus 269 ~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 269 KKIARKMLEIEHG--ELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHhccccCHH
Confidence 9999887743221 1224557777777777643
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.64 E-value=0.0008 Score=75.60 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=71.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcc--cceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHE--FEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~--F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
-+.++|++|.||||+|+.++..+... .....|+.. ....+...+. +... ......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v---------~~~~l~~~~~---g~~~-----~~~~~~~~~--- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV---------TRDDLVGQYI---GHTA-----PKTKEILKR--- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe---------cHHHHhHhhc---ccch-----HHHHHHHHH---
Confidence 57899999999999999988765432 111123321 1112221111 1100 001122222
Q ss_pred cceEEEEeccCCCh-----------HHHHHHHhccCCCCCCcEEEEEcCChhHHhhh------CCccceEEEcCCCCHHH
Q 000780 292 RMKLLIVLDDVNEV-----------GQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF------RGEEKKIYRVNGLEFEE 354 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~------~~~~~~~~~l~~L~~~e 354 (1288)
-..-+|+||++... +..+.|...+.....+-+||+++........+ .+.....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 13468889999632 22455666555444566777776543221111 01124578999999999
Q ss_pred HHHHHhhhh
Q 000780 355 AFEHFCNFA 363 (1288)
Q Consensus 355 a~~Lf~~~a 363 (1288)
-.+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988766
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00083 Score=80.35 Aligned_cols=182 Identities=16% Similarity=0.254 Sum_probs=105.5
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc---c----eeE------------
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF---E----GSC------------ 244 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F---~----~~~------------ 244 (1288)
|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...= + +.|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~--i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR--AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC--CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 4566789999999999999887532 346678999999999999999998653210 0 000
Q ss_pred -EeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCCC
Q 000780 245 -FVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQG 321 (1288)
Q Consensus 245 -~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~g 321 (1288)
|+. +.+ ... .++..+. ++...+. ..-...++-++|+|+++.. +..+.|+..+......
T Consensus 91 d~~~-i~g-~~~-~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 DVLE-IDG-ASH-RGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred ceEE-eec-ccc-CCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 000 000 000 1111111 1111000 0001244567899998654 3355666555544456
Q ss_pred cEEEEEcC-ChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 322 SRIVVTTR-DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 322 srIivTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
..+|++|. ...+...... ....+++..+++++..+.+...+-..+. .-..+.++.+++.++|.+-
T Consensus 152 ~~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLR 217 (451)
T ss_pred ceEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 66666553 3333333211 3457999999999998888776533221 1123457888999998763
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.61 E-value=0.00088 Score=86.28 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=87.2
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc------ceeEEeeecccccc-c--
Q 000780 185 DSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVSDVRGNSE-T-- 255 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~-~-- 255 (1288)
..-+.+|||+.++.++.+.|.... ..-+.++|.+|+||||+|+.+++++.... ...+|..+...... .
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~---~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR---QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC---cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 445689999999999999887632 33456999999999999999999875431 12333322211110 0
Q ss_pred CCChHHHHHHHHhhhcCccccccCCCchhHHHHHH-hcceEEEEeccCCChH-------H--HH-HHHhccCCCCCCcEE
Q 000780 256 AGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV-RRMKLLIVLDDVNEVG-------Q--LK-RLIGELDQFGQGSRI 324 (1288)
Q Consensus 256 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~-------~--~~-~l~~~l~~~~~gsrI 324 (1288)
......-.+ ..+.+.- .+++++|++|++.... + .. .|.+.+.. | .-++
T Consensus 261 ~ge~e~~lk-------------------~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~ 319 (852)
T TIGR03345 261 KGEFENRLK-------------------SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRT 319 (852)
T ss_pred chHHHHHHH-------------------HHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEE
Confidence 001111111 1222221 2467999999884431 1 11 23333321 2 3455
Q ss_pred EEEcCChhHHh------hhCCccceEEEcCCCCHHHHHHHHhhh
Q 000780 325 VVTTRDKRVLE------KFRGEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 325 ivTTR~~~v~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
|-||...+... .+.. ....+.++.++.+++.+++...
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r-Rf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR-RFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH-hCeEEEeCCCCHHHHHHHHHHH
Confidence 65555432211 1111 3358999999999999997543
No 141
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00086 Score=80.62 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=109.7
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc-c-------------------cee
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE-F-------------------EGS 243 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F-------------------~~~ 243 (1288)
|....++||-+.-.+.|...+..+ .-.+...++|+.|+||||+|+.+++.+-.. . ...
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 456678999999999999888653 234567899999999999999999865311 0 001
Q ss_pred EEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCCC
Q 000780 244 CFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQG 321 (1288)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~g 321 (1288)
++..+ . +.. .++..+...+ ..... .-..+++-++|+|+++... ..+.|+..+....+.
T Consensus 88 v~eld--a-as~-~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 88 IIEMD--A-ASN-RGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEEec--c-ccc-cCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 11100 0 000 1222222211 11000 0001345588999997543 466676666555566
Q ss_pred cEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 322 SRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 322 srIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
+++|++|.+. .+.....+ ....+++.+++.++..+.+...+-..+.. -..+.+..|++.++|.+--+
T Consensus 148 t~FIL~ttd~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 148 VKFILATTDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDT 215 (535)
T ss_pred eEEEEEECChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 7777776654 22222222 34689999999999998887665432221 12345778899999987433
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.59 E-value=0.00058 Score=81.57 Aligned_cols=164 Identities=19% Similarity=0.339 Sum_probs=91.2
Q ss_pred ccCCCCCcccchhhHHHHHHhhccC----------CCCCceEEEEEecCCchHHHHHHHHHHHhhccc-----ceeEEee
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMD----------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF-----EGSCFVS 247 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F-----~~~~~~~ 247 (1288)
|.....++.|.+..++++.+.+... .-...+-+.++|++|.|||++|+++++.+...+ ....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 3334456788999988888765321 002345688999999999999999999875542 2233432
Q ss_pred eccccc--ccCC-ChHHHHHHHHhhhcCccccccCCCchhHHHHH-HhcceEEEEeccCCChH---------H-----HH
Q 000780 248 DVRGNS--ETAG-GLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER-VRRMKLLIVLDDVNEVG---------Q-----LK 309 (1288)
Q Consensus 248 ~~~~~~--~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-l~~k~~LlVLDdv~~~~---------~-----~~ 309 (1288)
+.... .... ......+.+. +..++. ..+++++|+||+++..- + +.
T Consensus 257 -v~~~eLl~kyvGete~~ir~iF----------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 257 -IKGPELLNKYVGETERQIRLIF----------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred -ccchhhcccccchHHHHHHHHH----------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 21100 0000 0000111111 111111 12468999999996421 1 23
Q ss_pred HHHhccCCCC--CCcEEEEEcCChhHHh-hhC--CccceEEEcCCCCHHHHHHHHhhhh
Q 000780 310 RLIGELDQFG--QGSRIVVTTRDKRVLE-KFR--GEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 310 ~l~~~l~~~~--~gsrIivTTR~~~v~~-~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
.++..++... .+..||.||-..+... ..- +..+..++++..+.++..++|..+.
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 4444444322 3444555664443322 111 1245679999999999999999876
No 143
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.59 E-value=2.3e-06 Score=94.69 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=62.9
Q ss_pred cCCCCcEEEcCCCCCCCcccccc-ccCCCCCcEEEecCCCCCC---CchhhcCCCCCcEEEccCCCCc------cCchhh
Q 000780 836 LSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYAVRE---IPQEIAYLSSLEILYLSGNNFE------SLPAII 905 (1288)
Q Consensus 836 ~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~Ls~n~l~------~lp~~l 905 (1288)
+..+|+.|-++.|...+...... ..+.+.|+.+++..|.... +-.--.+++.|+.|.|++|... .+...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34667777777776544433332 3456677777777765543 2222245677777777776432 122333
Q ss_pred hcCCCCCEEEecCCCCCCccC----CcCccccEEEeeCCCCCCc
Q 000780 906 KQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKMLQS 945 (1288)
Q Consensus 906 ~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~l~~c~~l~~ 945 (1288)
..+..|..+.|++|+.+..-. ..-++|+.+++.+|.....
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 456677777777777654321 1234677777777765543
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.58 E-value=0.00041 Score=81.21 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=99.7
Q ss_pred cCCCCCcccchhhHHHHHHhhccC----------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccc
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMD----------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNS 253 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~ 253 (1288)
...-.++.|.+..++++.+.+... .-...+-|.++|++|.|||++|+++++.....|-. +. .
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~---i~-~---- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR---VV-G---- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE---Ee-h----
Confidence 334457889999998888765321 00345778899999999999999999876544311 11 0
Q ss_pred ccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh-------------H---HHHHHHhccCC
Q 000780 254 ETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV-------------G---QLKRLIGELDQ 317 (1288)
Q Consensus 254 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~ 317 (1288)
..+..... +.. ...+.+.+.......+.+|+||+++.. + .+..++..+..
T Consensus 213 ------s~l~~k~~---ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 213 ------SEFVQKYL---GEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ------HHHHHHhc---chh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 01111111 000 000112233333456889999997532 0 13334433332
Q ss_pred C--CCCcEEEEEcCChhHHhh-h-C-CccceEEEcCCCCHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHhhhcCC
Q 000780 318 F--GQGSRIVVTTRDKRVLEK-F-R-GEEKKIYRVNGLEFEEAFEHFCNFAFKENHC-PEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 318 ~--~~gsrIivTTR~~~v~~~-~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~Gl 387 (1288)
+ ..+..||+||...+.... . . +..+..++++..+.++..++|..+.-+.... .-+ ..++++.+.|.
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKI 350 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCC
Confidence 2 235667888876543322 1 1 1245678999999999999998765332211 122 34555556555
No 145
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0016 Score=78.45 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=105.9
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc---c------------------ce
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE---F------------------EG 242 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---F------------------~~ 242 (1288)
|.....++|-+.-++.+..++..+. -.+.+.++|+.|+||||+|+.++..+... . ..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 4456789999999999999997642 34566789999999999999999865321 0 00
Q ss_pred eEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH-----hcceEEEEeccCCCh--HHHHHHHhcc
Q 000780 243 SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV-----RRMKLLIVLDDVNEV--GQLKRLIGEL 315 (1288)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~--~~~~~l~~~l 315 (1288)
...+. . +.. .++..+ +.+.+.. .+++-++|+|+++.. +..+.|+..+
T Consensus 90 ~~eid-a---as~-~gvd~i---------------------r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~L 143 (486)
T PRK14953 90 LIEID-A---ASN-RGIDDI---------------------RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTL 143 (486)
T ss_pred EEEEe-C---ccC-CCHHHH---------------------HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHH
Confidence 01110 0 000 111111 1222221 245568999998754 3456666665
Q ss_pred CCCCCCcEEEEEc-CChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 316 DQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 316 ~~~~~gsrIivTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
....+...+|++| +...+...... ....+++.+++.++..+.+...+-..+.. ...+.+..+++.++|.+..+.
T Consensus 144 Eepp~~~v~Il~tt~~~kl~~tI~S-Rc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 144 EEPPPRTIFILCTTEYDKIPPTILS-RCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred hcCCCCeEEEEEECCHHHHHHHHHH-hceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 5444455555554 43333332211 34578999999999988888765332211 122446778888888765443
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=4e-05 Score=81.10 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=90.6
Q ss_pred ccccceeeecCccCCC--CcchhhhhccccceeecccccCcccCccc-CCCCCCcEEEeccCCCC-CCCCCcCCCCchHH
Q 000780 743 LRSLVTLILLGCLNLE--HFPEILEKMEHLKRIYSDRTPITELPSSF-ENLPGLEVLFVEDCSKL-DNLPDNIGSLEYLY 818 (1288)
Q Consensus 743 l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~ 818 (1288)
.+.++.|+|.+|.... .+...+.+|+.|++|+++.|.+..--.++ ..+.+|+.|-|.+..+. ......+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555554332 23344555566666666665544221111 23445566655554432 12223344555556
Q ss_pred HHhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCC---CchhhcCCCCCcEEEccC
Q 000780 819 YILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE---IPQEIAYLSSLEILYLSG 895 (1288)
Q Consensus 819 ~L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~Ls~ 895 (1288)
.|.++.|++..+ ++..+... ..-+.++.|+...|.... +-.--.-+|++..+-+..
T Consensus 150 elHmS~N~~rq~-------------n~Dd~c~e--------~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 150 ELHMSDNSLRQL-------------NLDDNCIE--------DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhccchhhhh-------------cccccccc--------ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 666555543322 11111100 011123333333332211 001112367888888888
Q ss_pred CCCccCc--hhhhcCCCCCEEEecCCCCCC--ccC--CcCccccEEEeeCCCCCCccC
Q 000780 896 NNFESLP--AIIKQMSQLRFIHLEDFNMLQ--SLP--ELPLCLKYLHLIDCKMLQSLP 947 (1288)
Q Consensus 896 n~l~~lp--~~l~~l~~L~~L~L~~~~~l~--~lp--~~~~~L~~L~l~~c~~l~~~~ 947 (1288)
|.+.+.. .....++.+..|+|+.++.-. ++. ..+++|..|.+.+++....+.
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 8777554 345567777788887765432 111 346788888888888766554
No 147
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.55 E-value=0.0029 Score=70.19 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=101.6
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHH
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQ 265 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ 265 (1288)
..+.+.+|+.+++.+..++...+..-...|.|+|-+|.|||.+.+++.+... ...+|+..+.. +....+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~ec-----ft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVEC-----FTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHHh-----ccHHHHHHH
Confidence 3567899999999999999776522345568999999999999999998763 23567764433 566677777
Q ss_pred HHhhhcCccccc---cC--CCch---hHHHH--HH--hcceEEEEeccCCChHHH-----HHHHhccCCCCCCcEEEEEc
Q 000780 266 MLSTTLSEKLEV---AG--PNIP---HFTKE--RV--RRMKLLIVLDDVNEVGQL-----KRLIGELDQFGQGSRIVVTT 328 (1288)
Q Consensus 266 ll~~l~~~~~~~---~~--~~~~---~~l~~--~l--~~k~~LlVLDdv~~~~~~-----~~l~~~l~~~~~gsrIivTT 328 (1288)
|+.+.+..+.+. .+ +... ..+.+ .. +++.++||||+++...+. ..+.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 777764211111 11 1111 11121 11 146899999999766542 22221111011112334443
Q ss_pred CCh---hHHhhhCCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 329 RDK---RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 329 R~~---~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
-.. .-...+|.....++..+.-+.+|..+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 322 22222343344567788999999999987643
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0032 Score=75.13 Aligned_cols=154 Identities=15% Similarity=0.105 Sum_probs=84.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
...+.|+|+.|+|||+||+++++.+......++|+. ...+...+...+... ....+++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc--------hHHHHHHHcc
Confidence 356789999999999999999998765544455554 122333333333211 0133444443
Q ss_pred cceEEEEeccCCChH----HHHHHHhccCC-CCCCcEEEEEcCC-hhHH----hhhCC--ccceEEEcCCCCHHHHHHHH
Q 000780 292 RMKLLIVLDDVNEVG----QLKRLIGELDQ-FGQGSRIVVTTRD-KRVL----EKFRG--EEKKIYRVNGLEFEEAFEHF 359 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gsrIivTTR~-~~v~----~~~~~--~~~~~~~l~~L~~~ea~~Lf 359 (1288)
..-++++||+.... ..+.+...+.. ...|..||+||.. +... ..+.+ .....+++++++.++..+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 34478889985431 11222221110 0235578888854 2211 11111 13368899999999999999
Q ss_pred hhhhcCCCCCCchHHHHHHHHHhhhcCC
Q 000780 360 CNFAFKENHCPEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 360 ~~~af~~~~~~~~~~~l~~~i~~~~~Gl 387 (1288)
.+.+-.... .--.++..-|++.+.|.
T Consensus 281 ~~k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 887743221 11133445455555543
No 149
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=0.00011 Score=80.12 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=59.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhc-ccceeEEeeecccccccCCChHHHHHHHHhh-----hcCccccc-cC-CCc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLST-----TLSEKLEV-AG-PNI 282 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-----l~~~~~~~-~~-~~~ 282 (1288)
....++|.|++|+|||||++++++.... +|+..+|+..+.+ ...++.++++.+... ++...... .. ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e---r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE---RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC---CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4578899999999999999999997643 6899989875543 225788888888333 22211000 00 001
Q ss_pred hhHHHH-HHhcceEEEEeccCCCh
Q 000780 283 PHFTKE-RVRRMKLLIVLDDVNEV 305 (1288)
Q Consensus 283 ~~~l~~-~l~~k~~LlVLDdv~~~ 305 (1288)
....+. +-.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 112222 23478999999999644
No 150
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.53 E-value=0.00013 Score=71.59 Aligned_cols=89 Identities=24% Similarity=0.408 Sum_probs=46.0
Q ss_pred ccEEEccccccCCCchHHHHHHHHhhcC-------Ccc----------eEecCCCCCCCCCchHHHHHHhhccceEEEEe
Q 000780 11 YEVFLNFRGEDTRTSFTCHLYDNLYERK-------KIR----------TFIDDEGLRRGDEISPALLNAIQGSKISVVIF 73 (1288)
Q Consensus 11 ~dvfis~~~~d~r~~~~~~l~~~l~~~~-------g~~----------~~~d~~~~~~g~~~~~~l~~ai~~s~~~i~v~ 73 (1288)
|.|||||+..|.. .....|...+ ... .+. .+.+..+....+.|...|.++|..|.++||++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWL-ENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------THH--HHHHHHHHH-HH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccCcH-HHHHHHHHHh-ccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence 6799999998832 2666666666 442 121 12233333345578999999999999999999
Q ss_pred ccCcccchhhHHHHHHHHHHhhcCCcEEEEEE
Q 000780 74 SKDYASSKWCLHELLKILECKKMKGQIIIPVF 105 (1288)
Q Consensus 74 S~~y~~s~wcl~El~~i~~~~~~~~~~v~Pvf 105 (1288)
|++-..|+|+-.|+..+++. +..|+-|.
T Consensus 79 g~~T~~s~wV~~EI~~A~~~----~~~Ii~V~ 106 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALKK----GKPIIGVY 106 (130)
T ss_dssp -TT----HHHHHHHHHHTTT-------EEEEE
T ss_pred CCCcccCcHHHHHHHHHHHC----CCCEEEEE
Confidence 99999999999999988763 33466653
No 151
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0019 Score=79.96 Aligned_cols=196 Identities=17% Similarity=0.156 Sum_probs=109.4
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
|.....++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-...... . .....+.-...
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~-------~~~~Cg~C~~C 81 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-P-------TPEPCGKCELC 81 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-C-------CCCCCcccHHH
Confidence 4556789999999999999887642 235678999999999999999998764321000 0 00001111222
Q ss_pred HHHHhhhcCccccccC--CCchhHHHHHH--------hcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEcCC-
Q 000780 264 KQMLSTTLSEKLEVAG--PNIPHFTKERV--------RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD- 330 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~--~~~~~~l~~~l--------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTTR~- 330 (1288)
+.+......+-...+. ....+.+++.+ .+++-++|+|+++.. +..+.|+..+........+|++|.+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 2222111100000000 00112222221 234458899999754 3466776666543445555554443
Q ss_pred hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHH
Q 000780 331 KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 331 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
..+.....+ ....+++..++.++....+.+.+-..+.. -..+.+..+++.++|.+..+.
T Consensus 162 ~~llpTIrS-Rc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 162 QRVLPTIIS-RCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 344333321 35678889999999888887765432211 112447788899999875443
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0019 Score=73.80 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=61.1
Q ss_pred ceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCC
Q 000780 293 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 369 (1288)
Q Consensus 293 k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 369 (1288)
.|++ |+|+++... ....|+..+..-.+++.+|+||.+. .+.....+ ....+.+.+++.+++.+.+..... . .
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~L~~~~~-~-~- 181 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACPLPSNEESLQWLQQALP-E-S- 181 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCCCcCHHHHHHHHHHhcc-c-C-
Confidence 4554 679997643 4666666555445677777777765 44433322 456799999999999999876531 1 1
Q ss_pred CchHHHHHHHHHhhhcCCchhHHHH
Q 000780 370 PEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 370 ~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
..+.+..++..++|.|+....+
T Consensus 182 ---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1223567788999999755544
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.00069 Score=87.79 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhccccccccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc-----
Q 000780 165 LVNKIVEDVLKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE----- 239 (1288)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----- 239 (1288)
.+++...++.++-.. .....++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++...
T Consensus 161 ~l~~~~~~l~~~a~~-----~~~~~~igr~~ei~~~~~~L~r~~---~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 161 TLEEFGTNLTKEAID-----GNLDPVIGREKEIERVIQILGRRT---KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred HHHHHHHHHHHHHHc-----CCCCCCCCcHHHHHHHHHHHcccc---cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 455555554443221 223569999999999999997642 3345699999999999999999976432
Q ss_pred c-ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCC-CchhHHHHHHhcceEEEEeccCCChH---------HH
Q 000780 240 F-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP-NIPHFTKERVRRMKLLIVLDDVNEVG---------QL 308 (1288)
Q Consensus 240 F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~l~~k~~LlVLDdv~~~~---------~~ 308 (1288)
. ...+|..+... +. . +.....+-+ .+...+.+.-..++++|++|++.... ..
T Consensus 233 l~~~~i~~l~~~~----------l~----a---g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~ 295 (821)
T CHL00095 233 LEDKLVITLDIGL----------LL----A---GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA 295 (821)
T ss_pred hcCCeEEEeeHHH----------Hh----c---cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH
Confidence 1 23344332211 11 0 000000000 01122222223467899999984211 12
Q ss_pred HHHH-hccCCCCCCcEEEEEcCChhHHhh------hCCccceEEEcCCCCHHHHHHHHhh
Q 000780 309 KRLI-GELDQFGQGSRIVVTTRDKRVLEK------FRGEEKKIYRVNGLEFEEAFEHFCN 361 (1288)
Q Consensus 309 ~~l~-~~l~~~~~gsrIivTTR~~~v~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~ 361 (1288)
..++ +.+. .| .-++|.+|........ +. .....++++..+.++...++..
T Consensus 296 a~lLkp~l~-rg-~l~~IgaTt~~ey~~~ie~D~aL~-rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 296 ANILKPALA-RG-ELQCIGATTLDEYRKHIEKDPALE-RRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHhHHHHh-CC-CcEEEEeCCHHHHHHHHhcCHHHH-hcceEEecCCCCHHHHHHHHHH
Confidence 2222 2222 12 2345555554433211 11 1335678999999998888764
No 154
>CHL00181 cbbX CbbX; Provisional
Probab=97.48 E-value=0.0039 Score=70.03 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcc-c-ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHE-F-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
..+.++|.+|+||||+|+.+++..... + ...-|+. .....+...+..+ .. ......+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~---------v~~~~l~~~~~g~---~~-----~~~~~~l~~-- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT---------VTRDDLVGQYIGH---TA-----PKTKEVLKK-- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE---------ecHHHHHHHHhcc---ch-----HHHHHHHHH--
Confidence 347899999999999999998864321 1 1111222 1111222222110 00 000012222
Q ss_pred hcceEEEEeccCCC-----------hHHHHHHHhccCCCCCCcEEEEEcCChhHHh------hhCCccceEEEcCCCCHH
Q 000780 291 RRMKLLIVLDDVNE-----------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLE------KFRGEEKKIYRVNGLEFE 353 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~-----------~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~------~~~~~~~~~~~l~~L~~~ 353 (1288)
...-+|+||+++. .+..+.|...+.....+.+||+++....+.. .+.+.....+++++++.+
T Consensus 121 -a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 121 -AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred -ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 1235889999864 2335556555554445567777775433221 111113457999999999
Q ss_pred HHHHHHhhhhc
Q 000780 354 EAFEHFCNFAF 364 (1288)
Q Consensus 354 ea~~Lf~~~af 364 (1288)
|..+++...+-
T Consensus 200 el~~I~~~~l~ 210 (287)
T CHL00181 200 ELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0059 Score=69.38 Aligned_cols=192 Identities=13% Similarity=0.137 Sum_probs=106.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc---------------ccceeEEeeecccc
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH---------------EFEGSCFVSDVRGN 252 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------~F~~~~~~~~~~~~ 252 (1288)
.+++|-+..++.+...+..+. -.+...++|+.|+||+++|.++++.+-. .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r--l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR--IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 468999999999999887642 3478899999999999999999986422 12233343211000
Q ss_pred cccCCChHHHHHHHHhhhcCccccccCC--CchhHHHHHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcE
Q 000780 253 SETAGGLEHLQKQMLSTTLSEKLEVAGP--NIPHFTKERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSR 323 (1288)
Q Consensus 253 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~--~~~~~l~~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsr 323 (1288)
... .. -...+...+......... +..+.+.+.+ .+.+=++|+|+++... ....|+..+..-. .+.
T Consensus 82 ~g~--~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGK--LI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred ccc--cc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 000 00 000000000000000000 0012233333 2345688889887553 3555555554333 345
Q ss_pred EEE-EcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHH
Q 000780 324 IVV-TTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEV 393 (1288)
Q Consensus 324 Iiv-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 393 (1288)
+|+ |++...+.....+ ....+++.++++++..+.+........ .......++..++|.|..+..
T Consensus 156 fILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 156 LILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHH
Confidence 554 4444455554432 457899999999999999987642111 111135788999999975544
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0021 Score=78.65 Aligned_cols=193 Identities=12% Similarity=0.128 Sum_probs=109.0
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....+++|-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-..... . .+.-..
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~-p---------C~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM-P---------CGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC-C---------CccchH
Confidence 3456678999999999999998753 234668899999999999999999865321000000 0 000000
Q ss_pred HHHHHhhhcCccccccCC--CchhHHHHH--------HhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCC
Q 000780 263 QKQMLSTTLSEKLEVAGP--NIPHFTKER--------VRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRD 330 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~~--~~~~~l~~~--------l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~ 330 (1288)
-+++...-...-...++. ...+.+++. ..+++-++|+|+++... .++.|+..+....+...+|++|.+
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 011100000000000000 001111111 12445578899987554 467777766654556666665544
Q ss_pred -hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 331 -KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 331 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
..+.....+ ....++..+++.++..+.+...+...+.. -..+.+..|++.++|.+-.
T Consensus 159 ~~kL~~tI~S-Rc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 159 VHKLPATIKS-RCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred hHHhHHHHHH-hceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 344333221 34578999999999988888766433322 1234567788888887743
No 157
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.47 E-value=0.002 Score=70.07 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...+.++|.+|+|||+||.++++.+..+-..++|+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45788999999999999999999876655555665
No 158
>PRK06620 hypothetical protein; Validated
Probab=97.46 E-value=0.00058 Score=73.16 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=74.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 292 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 292 (1288)
+.+.|||++|+|||+||+++++.... .++.. . ... . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~-~~~------------------------~---~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------I-FFN------------------------E---EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------h-hhc------------------------h---hHHh-
Confidence 66899999999999999998765421 22210 0 000 0 0111
Q ss_pred ceEEEEeccCCChHH--HHHHHhccCCCCCCcEEEEEcCChh-------HHhhhCCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 293 MKLLIVLDDVNEVGQ--LKRLIGELDQFGQGSRIVVTTRDKR-------VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 293 k~~LlVLDdv~~~~~--~~~l~~~l~~~~~gsrIivTTR~~~-------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
..-++++||++..++ +-.+...+. ..|..||+|++... +...+. ..-+++++++++++-.+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~--~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIK--SVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHh--CCceEeeCCCCHHHHHHHHHHHH
Confidence 234688899975432 223322222 34668999987442 222222 34479999999999888887766
Q ss_pred cCCCCCCchHHHHHHHHHhhhcCC
Q 000780 364 FKENHCPEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 364 f~~~~~~~~~~~l~~~i~~~~~Gl 387 (1288)
-...- .--+++.+-|++.+.|-
T Consensus 161 ~~~~l--~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 161 SISSV--TISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHcCC--CCCHHHHHHHHHHccCC
Confidence 32111 11234455566655554
No 159
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=0.00014 Score=55.58 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=21.2
Q ss_pred CCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCc
Q 000780 864 AMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 902 (1288)
Q Consensus 864 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 902 (1288)
+|++|++++|.++++|..++.+++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555566666666665555544
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0018 Score=80.21 Aligned_cols=179 Identities=13% Similarity=0.210 Sum_probs=107.1
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc-----------------------c
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE-----------------------F 240 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----------------------F 240 (1288)
|.....++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-.. |
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 455678999999999999998753 234668899999999999999998865311 1
Q ss_pred ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCC
Q 000780 241 EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQF 318 (1288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~ 318 (1288)
+...+ . . ... .++..+. .++.++... - ..+++=++|+|+++... ..+.|+..+...
T Consensus 91 n~~~l-d-~---~~~-~~vd~Ir-~li~~~~~~--------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 91 NIHEL-D-A---ASN-NSVDDIR-NLIEQVRIP--------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred ceEEe-c-c---ccc-CCHHHHH-HHHHHHhhC--------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 11111 0 0 000 1122221 111111000 0 11233478999987653 466666666554
Q ss_pred CCCcEEEE-EcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 319 GQGSRIVV-TTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 319 ~~gsrIiv-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
...+.+|+ ||+...+.....+ ...++++.+++.++....+.+.+-..+.. ...+.+..|++.++|..-
T Consensus 149 p~~tifIL~tt~~~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILS-RCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHh-hhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 45666655 4454555544322 45689999999999998888765433221 112346788888888654
No 161
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=1.8e-05 Score=74.28 Aligned_cols=104 Identities=16% Similarity=0.347 Sum_probs=73.4
Q ss_pred HHHHhhcccCCccCCcc---cccCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEc
Q 000780 817 LYYILAAASAISQLPSS---VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYL 893 (1288)
Q Consensus 817 L~~L~l~~~~l~~lp~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 893 (1288)
+..++|+.|.+..++.. +.....|+..+|++|. ...+|..+...++.++.|++++|.+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34455566655544443 3334456666777776 3445555556677788888888888888888888888888888
Q ss_pred cCCCCccCchhhhcCCCCCEEEecCCCC
Q 000780 894 SGNNFESLPAIIKQMSQLRFIHLEDFNM 921 (1288)
Q Consensus 894 s~n~l~~lp~~l~~l~~L~~L~L~~~~~ 921 (1288)
+.|.+...|..+..|.+|-.|+..+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 8888888887777777787777766544
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0025 Score=77.17 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=86.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhccc--ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
..+.|+|..|.|||.|++++++.....+ ..++|+. ...+..++...+... ....+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 4589999999999999999999876543 2344543 223333333332211 113344444
Q ss_pred hcceEEEEeccCCCh---HH----HHHHHhccCCCCCCcEEEEEcCCh---------hHHhhhCCccceEEEcCCCCHHH
Q 000780 291 RRMKLLIVLDDVNEV---GQ----LKRLIGELDQFGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEE 354 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~~---~~----~~~l~~~l~~~~~gsrIivTTR~~---------~v~~~~~~~~~~~~~l~~L~~~e 354 (1288)
++ .=+|||||+... +. +-.+...+. ..|..|||||+.. .+...+. ..-+++++..+.+.
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~--~GLvv~I~~PD~Et 450 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFE--WGLITDVQPPELET 450 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhh--cCceEEcCCCCHHH
Confidence 43 347888999543 11 222222221 3456788888753 2222233 45679999999999
Q ss_pred HHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCC
Q 000780 355 AFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 355 a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 387 (1288)
..+++.+++-.... .--.++++-|++.+.+.
T Consensus 451 R~aIL~kka~~r~l--~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 451 RIAILRKKAVQEQL--NAPPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHHHhcCC--CCCHHHHHHHHHhccCC
Confidence 99999988743322 11234455555555544
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.0012 Score=85.26 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 185 DSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
..-+.++||+.+++++.+.|+... ..-+.++|.+|+|||++|+.++.++..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT---KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC---cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 344579999999999999987632 344569999999999999999998754
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.001 Score=83.98 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.+++++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~---~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR---KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3569999999999999887642 23346899999999999999998753
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.0054 Score=65.20 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=42.1
Q ss_pred cCCCCCcccchhhHHHHHHhhcc-CCCCCceEEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCM-DSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
+...+.++|.|.+.+.|.+-... -.+....-|.+||..|.|||++++++.+.+..+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 33456899999999888654321 1113455677899999999999999999887653
No 166
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.37 E-value=0.00042 Score=79.00 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=61.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc-cceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCC---Cc----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP---NI---- 282 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~---~~---- 282 (1288)
.-+.++|+|++|.|||||++.+++.+..+ |+..+|+..+++ ....+.++++.++..+-....+.... .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45788999999999999999999987655 999999876533 22578889998865422221111110 11
Q ss_pred hhHHH-HHHhcceEEEEeccCCChH
Q 000780 283 PHFTK-ERVRRMKLLIVLDDVNEVG 306 (1288)
Q Consensus 283 ~~~l~-~~l~~k~~LlVLDdv~~~~ 306 (1288)
.+..+ .+-++++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 11111 1235789999999996544
No 167
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.36 E-value=1.1e-05 Score=89.40 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=116.1
Q ss_pred ccceeecccccCc---ccCcccCCCCCCcEEEeccCCCCCCC--CCcCCCCchHHHHhhccc-CCccC--CcccccCCCC
Q 000780 769 HLKRIYSDRTPIT---ELPSSFENLPGLEVLFVEDCSKLDNL--PDNIGSLEYLYYILAAAS-AISQL--PSSVALSNML 840 (1288)
Q Consensus 769 ~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~l--p~~l~~l~~L~~L~l~~~-~l~~l--p~~l~~l~~L 840 (1288)
.|+.|.+.|+.-. .+-....++++++.|.+.+|..+... -..-..+.+|+.|++..| .++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3566666665432 22223456677777777777643211 111124556666666653 23311 1122346667
Q ss_pred cEEEcCCCCCCCcccc-ccccCCCCCcEEEecCCCCCCCc---hhhcCCCCCcEEEccCCC-CccCc--hhhhcCCCCCE
Q 000780 841 RSLDSSHCKGLESFPR-TFLLGLSAMGLLHISDYAVREIP---QEIAYLSSLEILYLSGNN-FESLP--AIIKQMSQLRF 913 (1288)
Q Consensus 841 ~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~l~~lp---~~l~~l~~L~~L~Ls~n~-l~~lp--~~l~~l~~L~~ 913 (1288)
++|+++.|.....-.. ....+...++.+.+.+|.-.++. ..-....-+.++++..|+ ++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 7777777764433111 12344445555555555333221 111334445555655553 23221 12234566777
Q ss_pred EEecCCCCCCccC-----CcCccccEEEeeCCCCCCccCC-----CCCCcceeeccCCCCcCC-----CCCCCCCCcEEe
Q 000780 914 IHLEDFNMLQSLP-----ELPLCLKYLHLIDCKMLQSLPV-----LPFCLESLDLTGCNMLRS-----LPELPLCLQYLN 978 (1288)
Q Consensus 914 L~L~~~~~l~~lp-----~~~~~L~~L~l~~c~~l~~~~~-----~~~~L~~L~Ls~n~~~~~-----l~~~~~~L~~L~ 978 (1288)
|+.++|...+..+ ..-.+|+.|.++.|..+..... ..+.|+.|++..|..... +....+.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 7777776644322 2335677777777765543322 223466666666654321 112344566666
Q ss_pred ccCCCCccCCC--------CCCCcccEEecccccCc
Q 000780 979 LEDCNMLRSLP--------ELPLCLQLLTVRNCNRL 1006 (1288)
Q Consensus 979 Ls~n~~l~~lp--------~~~~sL~~L~l~~c~~l 1006 (1288)
|++|...+... .....|+.|.+.+|+.+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 66665554331 12334555666666543
No 168
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.36 E-value=0.0014 Score=70.56 Aligned_cols=192 Identities=15% Similarity=0.211 Sum_probs=113.3
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc--ccceeEEeeecccccccCCChH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH--EFEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
.|...++++|-+..+..|...+.. ........+|++|.|||+.|++++..+-. -|..++-=.+.. .. .|..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS---de-rGis 103 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS---DE-RGIS 103 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc---cc-cccc
Confidence 345667899999999999888865 35678889999999999999999986533 354444322221 11 2222
Q ss_pred HHHHHH--HhhhcCccccccCCCchhHHHHHHhcce-EEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHH
Q 000780 261 HLQKQM--LSTTLSEKLEVAGPNIPHFTKERVRRMK-LLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVL 334 (1288)
Q Consensus 261 ~l~~~l--l~~l~~~~~~~~~~~~~~~l~~~l~~k~-~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~ 334 (1288)
-...++ ...+.......++. ..++ =.||||+++... .|.++......+...+|.|..|-.- .+.
T Consensus 104 vvr~Kik~fakl~~~~~~~~~~----------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 104 VVREKIKNFAKLTVLLKRSDGY----------PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred chhhhhcCHHHHhhccccccCC----------CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 111111 00000000000000 0012 368899998754 4888888877777777765444332 221
Q ss_pred hhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCC-chhHHHH
Q 000780 335 EKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN-PLVLEVL 394 (1288)
Q Consensus 335 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~l 394 (1288)
....+ ...-|..++|.+++..+-+...+-..+... ..+..+.|++.++|- --|+.++
T Consensus 174 ~pi~S-RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 174 RPLVS-RCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHh-hHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 11111 334688999999999988888775444322 234578888888884 3344443
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0036 Score=77.05 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=107.2
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....+++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..-... .. +.+.-..
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~-pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GE-PCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CC-CCCccHH
Confidence 35567889999999999999987642 356677899999999999999988653210000 00 0111111
Q ss_pred HHHHHhhhcCccccccCC--Cchh---HHHHH-----HhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEE-EcC
Q 000780 263 QKQMLSTTLSEKLEVAGP--NIPH---FTKER-----VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVV-TTR 329 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~~--~~~~---~l~~~-----l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIiv-TTR 329 (1288)
.+.+......+-...+.. ...+ .+.+. ..+++-++|+|+++.. .....|+..+........+|+ ||.
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 111111100000000000 0011 12222 1234568899999755 346677665554334445454 444
Q ss_pred ChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 330 DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 330 ~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
...+.....+ ....++...++.++..+.+...+-..+... ..+.+..|++.++|.+.
T Consensus 159 ~~ki~~tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 159 PHKIPATILS-RCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMR 215 (559)
T ss_pred hhhCcHHHHh-HheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 4444333221 345788999999999888877664322211 13446778888888764
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00062 Score=75.61 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=56.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 292 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 292 (1288)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC
Confidence 45789999999999999999998776644455553 2233333333221111 0111233444554
Q ss_pred ceEEEEeccCCC--hHH--HHHHHhccCC-CCCCcEEEEEcCC
Q 000780 293 MKLLIVLDDVNE--VGQ--LKRLIGELDQ-FGQGSRIVVTTRD 330 (1288)
Q Consensus 293 k~~LlVLDdv~~--~~~--~~~l~~~l~~-~~~gsrIivTTR~ 330 (1288)
-. ||||||+.. ... .+.+...+.. ...|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 899999932 222 2222222221 1355678899864
No 171
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0043 Score=71.54 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=100.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
....+.|||..|.|||.|++++.+......+...++. ...+.....+...+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~--------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN--------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh--------hHHHHHHhh
Confidence 4678999999999999999999998877766433332 11122333333332211 114556655
Q ss_pred hcceEEEEeccCCCh-------HHHHHHHhccCCCCCCcEEEEEcCCh---------hHHhhhCCccceEEEcCCCCHHH
Q 000780 291 RRMKLLIVLDDVNEV-------GQLKRLIGELDQFGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEE 354 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~~-------~~~~~l~~~l~~~~~gsrIivTTR~~---------~v~~~~~~~~~~~~~l~~L~~~e 354 (1288)
.-=++++||++-. +.+-.+...+. ..|-.||+|++.. .+...+. ..-++++.+++.+.
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~--~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLE--WGLVVEIEPPDDET 248 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHh--ceeEEeeCCCCHHH
Confidence 3448889998532 11222222222 2344899998543 3333343 45789999999999
Q ss_pred HHHHHhhhhcCCC--CCCchHHHHHHHHHhhhcCCchhHHHHhhhc--CCC--CHHHHHHHhhhh
Q 000780 355 AFEHFCNFAFKEN--HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL--CLK--RKSHWGKVLHDL 413 (1288)
Q Consensus 355 a~~Lf~~~af~~~--~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L--~~~--~~~~w~~~l~~l 413 (1288)
....+.+.+.... -+.+...-++.++.+-..-+.-|+..+..+- .++ +.+.-..++..+
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 9999988664322 2223333344444443333444454433322 122 444445555544
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.32 E-value=0.00089 Score=65.96 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhh
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 173
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.31 E-value=0.0093 Score=71.64 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCCcccchhhHHHHHHhhcc---C----CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCCh
Q 000780 187 SNGLVGLNSRIEQIKPFLCM---D----SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGL 259 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~---~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l 259 (1288)
..++.|.+...+.+.+.... . +-...+-|.++|++|.|||.+|+++++.+...| +..+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 35677887766666543211 0 003356788999999999999999998764332 2111110
Q ss_pred HHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--------------HHHHHHhccCCCCCCcEEE
Q 000780 260 EHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--------------QLKRLIGELDQFGQGSRIV 325 (1288)
Q Consensus 260 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--------------~~~~l~~~l~~~~~gsrIi 325 (1288)
+.... .+. ....+.+.++..-...+++|++|+++..- .+..++..+.....+--||
T Consensus 295 --l~~~~---vGe-----se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 --LFGGI---VGE-----SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred --hcccc---cCh-----HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 00000 000 00001122222223468999999986321 0222332222223344456
Q ss_pred EEcCChhHHh-hhC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHhhhcCC
Q 000780 326 VTTRDKRVLE-KFR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 326 vTTR~~~v~~-~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~Gl 387 (1288)
.||.+.+... .+. +.-+..+.++..+.++..++|..+..+..... .++ ....+++.+.|.
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~--dl~~La~~T~Gf 428 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKY--DIKKLSKLSNKF 428 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccccc--CHHHHHhhcCCC
Confidence 6776553221 110 12466889999999999999988774422110 111 134556666555
No 174
>PRK12377 putative replication protein; Provisional
Probab=97.31 E-value=0.0046 Score=67.39 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=29.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457889999999999999999998876655566654
No 175
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.31 E-value=0.0019 Score=84.06 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=41.5
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 185 DSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
..-+.+|||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++..
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~---~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRT---KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCC---CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344579999999999999987632 344558999999999999999998754
No 176
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0019 Score=79.81 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=106.3
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHH
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL 262 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l 262 (1288)
.|....++||.+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-.. .....+.-..
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~----------~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGL----------TAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC----------CCCCCCccHH
Confidence 3456678999999999999988653 234567899999999999999999865321000 0000000001
Q ss_pred HHHHHhhhcCccccccCC--Cc---hhHHHHHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEE-EcC
Q 000780 263 QKQMLSTTLSEKLEVAGP--NI---PHFTKERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVV-TTR 329 (1288)
Q Consensus 263 ~~~ll~~l~~~~~~~~~~--~~---~~~l~~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIiv-TTR 329 (1288)
...+...-...-...++. .. .+.+.+.+ ..++=++|+|+|+... ..+.|+..+....+...+|+ ||.
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 111100000000000000 00 01111111 1234478899997653 35666665554445666654 444
Q ss_pred ChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc-hhHHHH
Q 000780 330 DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP-LVLEVL 394 (1288)
Q Consensus 330 ~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~l 394 (1288)
...+.....+ ....+++..++.++....+...+-..+.. -..+....+++.++|.. .|+..+
T Consensus 159 ~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITILS-RCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHHH-hhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4445443321 34578899999999888877655322211 11334677888888865 344443
No 177
>CHL00176 ftsH cell division protein; Validated
Probab=97.30 E-value=0.0026 Score=78.93 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=98.7
Q ss_pred CCCCcccchhhHHHHHHhhccCC---------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccC
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDS---------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETA 256 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~ 256 (1288)
...+++|.+...+++.+.+..-. ....+-|.++|++|.|||++|++++......| +. +
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-i------- 247 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-I------- 247 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-c-------
Confidence 34578898887777766542211 12245688999999999999999998653322 21 0
Q ss_pred CChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh----------------HHHHHHHhccCCC--
Q 000780 257 GGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV----------------GQLKRLIGELDQF-- 318 (1288)
Q Consensus 257 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~-- 318 (1288)
....+...... . ....+...+.+.....+.+|+|||++.. ..+..++..+..+
T Consensus 248 -s~s~f~~~~~g---~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 248 -SGSEFVEMFVG---V-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -cHHHHHHHhhh---h-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 00111111100 0 0001113344445567899999999533 1144454444322
Q ss_pred CCCcEEEEEcCChhHHhh-hC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcC
Q 000780 319 GQGSRIVVTTRDKRVLEK-FR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKG 386 (1288)
Q Consensus 319 ~~gsrIivTTR~~~v~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 386 (1288)
..+-.||.||...+.... +. +.-+..+.++..+.++..++++.++-..... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 245566777766443321 11 1134678899999999999998887432111 11224566666666
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=7.4e-05 Score=93.13 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=69.3
Q ss_pred cccceeeecCccCCC-Ccchhhh-hccccceeecccccCc--ccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHH
Q 000780 744 RSLVTLILLGCLNLE-HFPEILE-KMEHLKRIYSDRTPIT--ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYY 819 (1288)
Q Consensus 744 ~~L~~L~L~~~~~~~-~~p~~l~-~l~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 819 (1288)
.+|++|+++|..... ..|..++ -+|+|+.|.+.+-.+. ++-.-..++|+|..||++++++... ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666666643321 1222222 2456666665554433 2222334555555555555554332 34455555555
Q ss_pred HhhcccCCccCCcccccCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCc-------hhhcCCCCCcEEE
Q 000780 820 ILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-------QEIAYLSSLEILY 892 (1288)
Q Consensus 820 L~l~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp-------~~l~~l~~L~~L~ 892 (1288)
|.+.+-.+..-. ....+..+.+|+.||+|.......+ +.-..+|.|+.||
T Consensus 200 L~mrnLe~e~~~-----------------------~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 200 LSMRNLEFESYQ-----------------------DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred HhccCCCCCchh-----------------------hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 555444433221 1112333444444444443332222 1113477788888
Q ss_pred ccCCCCc--cCchhhhcCCCCCEEEecC
Q 000780 893 LSGNNFE--SLPAIIKQMSQLRFIHLED 918 (1288)
Q Consensus 893 Ls~n~l~--~lp~~l~~l~~L~~L~L~~ 918 (1288)
.|++.+. -+...+..-++|+.+.+-+
T Consensus 257 cSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 257 CSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 8877665 2223344455555554433
No 179
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.01 Score=62.80 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=100.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCch----hH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP----HF 285 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~----~~ 285 (1288)
++.+++.++|.-|.|||.++|+....+-+.=-..+++. ... .+...+...+..++... ......... +.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~-~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPT-LSDATLLEAIVADLESQ-PKVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccc-hhHHHHHHHHHHHhccC-ccchhHHHHHHHHHH
Confidence 55679999999999999999966655443322223332 122 45566777777776552 111111111 22
Q ss_pred HHHH-Hhcce-EEEEeccCCChH--HHHHHH--hccC--CCCCCcEEEEEcCCh-------hHHhhhCCccceEEEcCCC
Q 000780 286 TKER-VRRMK-LLIVLDDVNEVG--QLKRLI--GELD--QFGQGSRIVVTTRDK-------RVLEKFRGEEKKIYRVNGL 350 (1288)
Q Consensus 286 l~~~-l~~k~-~LlVLDdv~~~~--~~~~l~--~~l~--~~~~gsrIivTTR~~-------~v~~~~~~~~~~~~~l~~L 350 (1288)
+.+. -++++ +.+++|+..+.. .++.+. ..+. ..++-+ |+..-..+ .+....+....-.|+++++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~-ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLS-IVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCcee-eeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 2222 24667 999999986533 233332 2221 112222 33322111 1222222212333999999
Q ss_pred CHHHHHHHHhhhhcCCCCCCchH-HHHHHHHHhhhcCCchhHHHHhh
Q 000780 351 EFEEAFEHFCNFAFKENHCPEDL-NWHSRSVVSYTKGNPLVLEVLGS 396 (1288)
Q Consensus 351 ~~~ea~~Lf~~~af~~~~~~~~~-~~l~~~i~~~~~GlPLal~~lg~ 396 (1288)
+.++...++..+..+...+.+-+ .+....|.....|.|.++..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999988765544333333 34567788899999999987764
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0033 Score=69.27 Aligned_cols=198 Identities=21% Similarity=0.294 Sum_probs=111.7
Q ss_pred CcccchhhHHHHHHhhccCC----------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCC
Q 000780 189 GLVGLNSRIEQIKPFLCMDS----------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGG 258 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~ 258 (1288)
..=|.+..+++|.+.....- =+..+=|.+||++|.|||-||++|+++....| +..+ +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvv--------g 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVV--------G 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEec--------c
Confidence 34466777777766543211 03456788999999999999999999865554 4321 1
Q ss_pred hHHHHHHHHhhhcCccccccCCCchhHHHHHHh-cceEEEEeccCCCh--------------HH--HHHHHhccCCCCCC
Q 000780 259 LEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR-RMKLLIVLDDVNEV--------------GQ--LKRLIGELDQFGQG 321 (1288)
Q Consensus 259 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~--------------~~--~~~l~~~l~~~~~g 321 (1288)
..+.++.+. ++..+.+.+-+.-+ ..+..|.+|.++.. -| +-.|+..++.|.+.
T Consensus 219 -SElVqKYiG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 -SELVQKYIG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred -HHHHHHHhc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 122222221 12222222222223 45788889987431 11 45667777777653
Q ss_pred --cEEEEEcCChhHHhhh---CCccceEEEcCCCCHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHhhhcCCc----hhH
Q 000780 322 --SRIVVTTRDKRVLEKF---RGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC-PEDLNWHSRSVVSYTKGNP----LVL 391 (1288)
Q Consensus 322 --srIivTTR~~~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlP----Lal 391 (1288)
-|||..|-..+++... .+.-++.++++.-+.+.-.++|.-|+-+-+.. .-++ +.+++.+.|.- -|+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 4778777554443221 11267789999778888888998877543222 2233 45556666654 344
Q ss_pred HHHhhhcC--C-C---CHHHHHHHhhhh
Q 000780 392 EVLGSSLC--L-K---RKSHWGKVLHDL 413 (1288)
Q Consensus 392 ~~lg~~L~--~-~---~~~~w~~~l~~l 413 (1288)
.+=|+.++ . + +.+++..+.++.
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 44455443 1 1 345555555443
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.17 E-value=0.0025 Score=65.42 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
|..-.++||-++.++.+.-.... ++.+-+.|.||+|+||||-+..+++.+-+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34456799999988888765544 45777889999999999999999986543
No 182
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.16 E-value=0.0017 Score=79.49 Aligned_cols=177 Identities=20% Similarity=0.294 Sum_probs=94.8
Q ss_pred CCCCcccchhhHHHHHHhhccC---------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccC
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMD---------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETA 256 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~ 256 (1288)
...+++|.+...+++.+.+..- .....+-+.++|++|.|||++|++++......| +. +
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i------- 119 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I------- 119 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c-------
Confidence 3456888887776666544310 012345588999999999999999998653332 11 0
Q ss_pred CChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH----------------HHHHHHhccCCC--
Q 000780 257 GGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG----------------QLKRLIGELDQF-- 318 (1288)
Q Consensus 257 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~-- 318 (1288)
....+...... . ....+...+.......+.+|+||+++... .+..++..+...
T Consensus 120 -~~~~~~~~~~g---~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 120 -SGSDFVEMFVG---V-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -cHHHHHHHHhc---c-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 11111111110 0 00011133333334567899999985421 133344443322
Q ss_pred CCCcEEEEEcCChhHHh-hhC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCC
Q 000780 319 GQGSRIVVTTRDKRVLE-KFR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 319 ~~gsrIivTTR~~~v~~-~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 387 (1288)
..+-.||.||...+... .+. +..+..++++..+.++..++|..++-+..... . .....+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCC
Confidence 23445566665543221 111 11456789999999999999988764322211 1 1134677777764
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0098 Score=67.31 Aligned_cols=94 Identities=11% Similarity=0.176 Sum_probs=62.0
Q ss_pred ceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCC
Q 000780 293 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 369 (1288)
Q Consensus 293 k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 369 (1288)
++=++|+|+++... .-..|+..+..-.+++.+|++|.+. .+.....+ ....+.+..++.+++.+.+.... .
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 34588899987654 3555655555445677777766654 44444332 45688999999999998887531 1
Q ss_pred CchHHHHHHHHHhhhcCCchhHHHHh
Q 000780 370 PEDLNWHSRSVVSYTKGNPLVLEVLG 395 (1288)
Q Consensus 370 ~~~~~~l~~~i~~~~~GlPLal~~lg 395 (1288)
. ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1226678999999998665543
No 184
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.13 E-value=0.012 Score=64.73 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=108.3
Q ss_pred CCcccchh---hHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccce------eEEeeecccccccCCC
Q 000780 188 NGLVGLNS---RIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG------SCFVSDVRGNSETAGG 258 (1288)
Q Consensus 188 ~~~vGr~~---~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~------~~~~~~~~~~~~~~~~ 258 (1288)
+..||-.. -++.|++++........+-+.|+|.+|+|||++++++.+.+...++. ++.+. .....+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCC
Confidence 34555433 35666677766544556778999999999999999999876444332 33332 223367
Q ss_pred hHHHHHHHHhhhcCccccccCC-CchhHHHHHHhcc-eEEEEeccCCCh-----HHHHHHHh---ccCCCCCCcEEEEEc
Q 000780 259 LEHLQKQMLSTTLSEKLEVAGP-NIPHFTKERVRRM-KLLIVLDDVNEV-----GQLKRLIG---ELDQFGQGSRIVVTT 328 (1288)
Q Consensus 259 l~~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~l~~k-~~LlVLDdv~~~-----~~~~~l~~---~l~~~~~gsrIivTT 328 (1288)
...+...|+..++......+.. .......+.++.- -=+||+|.+.+. .+-..++. .+...-.=+-|.|-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 7899999999987665433222 1223334444433 248899999553 11112222 221112234455555
Q ss_pred CC--------hhHHhhhCCccceEEEcCCCCHHH-HHHHHhhhh--cC-CCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 329 RD--------KRVLEKFRGEEKKIYRVNGLEFEE-AFEHFCNFA--FK-ENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 329 R~--------~~v~~~~~~~~~~~~~l~~L~~~e-a~~Lf~~~a--f~-~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
++ .+.+.. ...+.++....++ ...|+.... .. .....-...++++.|...++|+.--+
T Consensus 189 ~~A~~al~~D~QLa~R-----F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 189 REAYRALRTDPQLASR-----FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHhccCHHHHhc-----cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 43 333332 2356677666544 444443221 11 11112234578899999999986433
No 185
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.00061 Score=52.12 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCCcEEEccCCCCccCchhhhcCCCCCEEEecCCCCC
Q 000780 886 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 922 (1288)
Q Consensus 886 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 922 (1288)
++|++|++++|+++.+|..+++|++|+.|++++|+..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999654
No 186
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.0047 Score=72.80 Aligned_cols=148 Identities=22% Similarity=0.185 Sum_probs=90.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRM 293 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k 293 (1288)
++.|.|+=++||||+++.+....... .+|+......... ..+.+..+. +.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~--------------------~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRA--------------------YIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHH--------------------HHHhhccC
Confidence 99999999999999997766655444 5555422111111 111111111 11111127
Q ss_pred eEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHh-----hhCCccceEEEcCCCCHHHHHHHHhhhhcCCCC
Q 000780 294 KLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLE-----KFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 368 (1288)
Q Consensus 294 ~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 368 (1288)
+..|+||.|.....|+..+..+...++. +|+||+-+..+.. ...+ ....+++.+|+..|-..+-...+..
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G-R~~~~~l~PlSF~Efl~~~~~~~~~--- 169 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG-RGKDLELYPLSFREFLKLKGEEIEP--- 169 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC-CceeEEECCCCHHHHHhhcccccch---
Confidence 7899999999999999888887776766 8999987764432 2222 4567999999999987764311100
Q ss_pred CCchHHHHHHHHHhhhcCCchhHHH
Q 000780 369 CPEDLNWHSRSVVSYTKGNPLVLEV 393 (1288)
Q Consensus 369 ~~~~~~~l~~~i~~~~~GlPLal~~ 393 (1288)
... ...-+-.-..||.|-++..
T Consensus 170 --~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 170 --SKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred --hHH-HHHHHHHHHhCCCcHHHhC
Confidence 011 1112222356899988764
No 187
>PRK08181 transposase; Validated
Probab=97.06 E-value=0.0026 Score=70.21 Aligned_cols=35 Identities=26% Similarity=0.143 Sum_probs=28.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.-+.++|++|+|||.||.++.+....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999997765544555653
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=97.01 E-value=0.0078 Score=66.59 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=26.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...+.|+|++|+|||+||.+++.....+-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45678999999999999999988654443334444
No 189
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0013 Score=65.40 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=27.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
+.+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57889999999999999999997766553445543
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.015 Score=66.00 Aligned_cols=174 Identities=12% Similarity=0.139 Sum_probs=94.0
Q ss_pred HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcc--c
Q 000780 198 EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK--L 275 (1288)
Q Consensus 198 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~--~ 275 (1288)
+.+...+..+ .-.....++|+.|+||+++|++++..+--.-... ....+.-.--+.+......+- .
T Consensus 12 ~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~----------~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 12 QQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG----------DQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 4455555442 2346777999999999999999998652211000 000111111111111000000 0
Q ss_pred -cccCCCc-hhHHH---HHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCccc
Q 000780 276 -EVAGPNI-PHFTK---ERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEK 342 (1288)
Q Consensus 276 -~~~~~~~-~~~l~---~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~~~ 342 (1288)
+.++..+ .+.++ +.+ .+++=++|+|+++... ....|+..+..-.++..+|++|.+. .++....+ ..
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC 158 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RC 158 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hc
Confidence 0000000 12222 222 2334477799987654 3566666665556677777777665 44444322 45
Q ss_pred eEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhH
Q 000780 343 KIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 343 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 391 (1288)
..+.+.+++++++.+.+...... + ...+...+..++|.|+..
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~-----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA-----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc-----C--hHHHHHHHHHcCCCHHHH
Confidence 68999999999999988875411 1 112566788999999633
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.00 E-value=0.0095 Score=76.69 Aligned_cols=178 Identities=18% Similarity=0.210 Sum_probs=93.6
Q ss_pred CCCCcccchhhHHHHHHhhccC----------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccccc
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMD----------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET 255 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~ 255 (1288)
...++.|++..++++.+.+... .-...+-|.++|++|.|||+||+++++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 3456889999999888776421 002346688999999999999999998765443 1221 1000000
Q ss_pred CCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh-------------HHHHHHHhccCCC-CCC
Q 000780 256 AGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV-------------GQLKRLIGELDQF-GQG 321 (1288)
Q Consensus 256 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~-~~g 321 (1288)
..+- ....+...+.......+.+|+||+++.. .....++..+... ..+
T Consensus 252 ~~g~------------------~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 252 YYGE------------------SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred cccH------------------HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 0000 0000112333333455678999998532 1123343333322 233
Q ss_pred cEEEE-EcCChh-HHhhhC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc
Q 000780 322 SRIVV-TTRDKR-VLEKFR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 322 srIiv-TTR~~~-v~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 388 (1288)
..++| ||.... +..... +.-...+.++..+.++..+++..+.-+.....+ .....+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCC
Confidence 34444 444332 111111 013456788888999988888865422111111 12456667777754
No 192
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0089 Score=76.94 Aligned_cols=176 Identities=16% Similarity=0.201 Sum_probs=97.0
Q ss_pred CCCcccchhhHHHHHHhhccC----------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccC
Q 000780 187 SNGLVGLNSRIEQIKPFLCMD----------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETA 256 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~ 256 (1288)
-.++.|.+...++|.+.+... .-...+-+.++|++|.|||++|+++++.....| +....
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~------- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG------- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh-------
Confidence 356788888888777765421 012345688999999999999999999765443 11100
Q ss_pred CChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--------------HHHHHHHhccCCC--CC
Q 000780 257 GGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--------------GQLKRLIGELDQF--GQ 320 (1288)
Q Consensus 257 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~~--~~ 320 (1288)
..+.... .+. ....+...+...-...+.+|++|+++.. ..+..++..++.. ..
T Consensus 521 ---~~l~~~~---vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 ---PEILSKW---VGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ---HHHhhcc---cCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 0111110 000 0001112233333456789999998532 1134455544422 23
Q ss_pred CcEEEEEcCChhHHhh-hC--CccceEEEcCCCCHHHHHHHHhhhhcCCCCC-CchHHHHHHHHHhhhcCCc
Q 000780 321 GSRIVVTTRDKRVLEK-FR--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHC-PEDLNWHSRSVVSYTKGNP 388 (1288)
Q Consensus 321 gsrIivTTR~~~v~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlP 388 (1288)
+-.||.||...+.... .- +.-+..+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4455667755543322 11 1245688999999999999997665332211 122 345666666653
No 193
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.99 E-value=0.00027 Score=74.04 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=22.9
Q ss_pred cccCcccEEEcccCcCcccc----ccccccccccceeeecC
Q 000780 717 ECLTDLEVLDLRGCKRLKRI----STSFCKLRSLVTLILLG 753 (1288)
Q Consensus 717 ~~l~~L~~L~Ls~~~~l~~l----p~~l~~l~~L~~L~L~~ 753 (1288)
.-+..+..++||+|.+.+.- ...+.+-.+|+..++++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 34677888888888765433 23344456666666654
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0075 Score=69.45 Aligned_cols=151 Identities=11% Similarity=0.127 Sum_probs=85.9
Q ss_pred Cccc-chhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc---------------------cceeEEe
Q 000780 189 GLVG-LNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEGSCFV 246 (1288)
Q Consensus 189 ~~vG-r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~ 246 (1288)
.++| -+.-++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ++...++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 3566 555667777777543 335677899999999999999998865321 1111111
Q ss_pred eecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--HHHHHHhccCCCCCCcEE
Q 000780 247 SDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRI 324 (1288)
Q Consensus 247 ~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrI 324 (1288)
.-. ... -.++++.. +...+... -..+.+=++|+|+++... ..+.|+..+..-.+++.+
T Consensus 84 ~~~---~~~-i~id~ir~-l~~~~~~~---------------~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD---GQS-IKKDQIRY-LKEEFSKS---------------GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc---ccc-CCHHHHHH-HHHHHhhC---------------CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 100 000 11111111 11100000 012234468889886543 356666666655667777
Q ss_pred EEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhh
Q 000780 325 VVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 325 ivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
|++|.+. .+.....+ ....+++.+++.++..+.+...
T Consensus 144 Il~t~~~~~ll~TIrS-Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILS-RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHh-hceeeeCCCCCHHHHHHHHHHc
Confidence 7777654 33333322 4568999999999998888654
No 195
>PRK06526 transposase; Provisional
Probab=96.98 E-value=0.0061 Score=67.01 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=25.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEE
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCF 245 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 245 (1288)
..-+.++|++|+|||+||.++......+-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568899999999999999999876544223334
No 196
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.97 E-value=5.9e-05 Score=70.85 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=76.0
Q ss_pred CcccEEEcccCcCccccccc---cccccccceeeecCccCCCCcchhhh-hccccceeecccccCcccCcccCCCCCCcE
Q 000780 720 TDLEVLDLRGCKRLKRISTS---FCKLRSLVTLILLGCLNLEHFPEILE-KMEHLKRIYSDRTPITELPSSFENLPGLEV 795 (1288)
Q Consensus 720 ~~L~~L~Ls~~~~l~~lp~~---l~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~ 795 (1288)
..+..++|++|. +..++.. +.....|...+|++|. .+.+|+.|. ..+.++.|++.+|.+..+|..+..++.|+.
T Consensus 27 kE~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 345567777776 3333333 3344455666777754 445555544 445778888888888888888888888888
Q ss_pred EEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCccc
Q 000780 796 LFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSV 834 (1288)
Q Consensus 796 L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~~l 834 (1288)
|+++.|++.. .|..+..|.+|-.|+..+|.+..+|..+
T Consensus 105 lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 105 LNLRFNPLNA-EPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred cccccCcccc-chHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 8888887543 4555666888888888888887777653
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.0099 Score=77.10 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=39.8
Q ss_pred CCCcccchhhHHHHHHhhccC------CCCCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 187 SNGLVGLNSRIEQIKPFLCMD------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
...++|.+..++.+...+... .+....++.++|+.|+|||++|+.+++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356899999999988877532 1122357889999999999999999986543
No 198
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0035 Score=67.74 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=72.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh----hcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF----SHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFT 286 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~----~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l 286 (1288)
..|+|.++|++|.|||+|++++++++ .++|.....+. -+-..+..++.++.+.-- ..+-+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE---------inshsLFSKWFsESgKlV-----~kmF~kI 241 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE---------INSHSLFSKWFSESGKLV-----AKMFQKI 241 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE---------EehhHHHHHHHhhhhhHH-----HHHHHHH
Confidence 35899999999999999999999964 45566655554 122234444444322100 0011445
Q ss_pred HHHHhcce--EEEEeccCCChH-----------------HHHHHHhccCCCCCC-cEEEEEcCCh----hHHhhhCCccc
Q 000780 287 KERVRRMK--LLIVLDDVNEVG-----------------QLKRLIGELDQFGQG-SRIVVTTRDK----RVLEKFRGEEK 342 (1288)
Q Consensus 287 ~~~l~~k~--~LlVLDdv~~~~-----------------~~~~l~~~l~~~~~g-srIivTTR~~----~v~~~~~~~~~ 342 (1288)
.+.+.++. +++.+|.|+... .+.+++..++..... ..+|.||.+- +++---+ .+
T Consensus 242 ~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDR--AD 319 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDR--AD 319 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhH--hh
Confidence 55666554 556679884321 244555544433322 2455566543 2221111 33
Q ss_pred eEEEcCCCCHHHHHHHHhh
Q 000780 343 KIYRVNGLEFEEAFEHFCN 361 (1288)
Q Consensus 343 ~~~~l~~L~~~ea~~Lf~~ 361 (1288)
-...|++.+.+.-.+++..
T Consensus 320 i~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKS 338 (423)
T ss_pred heeecCCccHHHHHHHHHH
Confidence 3455666655555555543
No 199
>PRK10536 hypothetical protein; Provisional
Probab=96.94 E-value=0.0046 Score=66.61 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=40.7
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH-h-hcccceeEEe
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ-F-SHEFEGSCFV 246 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~F~~~~~~ 246 (1288)
...+.++......+..++.. ..+|.+.|.+|.|||+||.++..+ + .+.|...+..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred CccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 34567788888888887743 359999999999999999998874 3 4445544433
No 200
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.022 Score=68.53 Aligned_cols=160 Identities=20% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCcccchhhHHHHHHhhccC---CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMD---SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQK 264 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 264 (1288)
.+-+|.+.-.+++.+.|.-. ..-...+++++|++|+|||.|++.++......|-.. -+-.+|..++- +.-.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAEI----RGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAEI----RGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHHh----ccccc
Confidence 46899999999999888542 113457999999999999999999999887776332 22222222111 11111
Q ss_pred HHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChHH------HHHHHhccCCCC-------------CCcEE-
Q 000780 265 QMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVGQ------LKRLIGELDQFG-------------QGSRI- 324 (1288)
Q Consensus 265 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~------~~~l~~~l~~~~-------------~gsrI- 324 (1288)
.-. ..-...+.+.++ ..+.+.-|++||.++.... -.+|+..++--. .=|.|
T Consensus 398 TYI--------GamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYI--------GAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccc--------ccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111 111111112222 2244577999999865321 233333332110 11444
Q ss_pred EEEcCCh-h-HHh-hhCCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 325 VVTTRDK-R-VLE-KFRGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 325 ivTTR~~-~-v~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
.|||-|. + +.. .+. ...++++.+-+++|-++.-.+|.
T Consensus 469 FiaTANsl~tIP~PLlD--RMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhc--ceeeeeecCCChHHHHHHHHHhc
Confidence 4566543 1 211 122 45689999999999999888776
No 201
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.035 Score=62.86 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=67.2
Q ss_pred eEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCC
Q 000780 294 KLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP 370 (1288)
Q Consensus 294 ~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 370 (1288)
+=++|+|+++... ....|+..+..-.+++.+|++|.+. .+.....+ ....+.+.+++.+++.+.+.....
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~~L~~~~~------ 181 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQWLKGQGI------ 181 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHHHHHHcCC------
Confidence 3477889887654 3566666665555677777666554 55554432 456899999999999998875421
Q ss_pred chHHHHHHHHHhhhcCCchhHHHHhhhcCCCCHHHHHHHhhhh
Q 000780 371 EDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDL 413 (1288)
Q Consensus 371 ~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l 413 (1288)
+ .+..++..++|.|+....+. .....+.++..+..+
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l 217 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQL 217 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 1 13567899999998766543 223334444444433
No 202
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.89 E-value=0.0016 Score=67.44 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=26.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..-+.++|..|+|||.||.++.+....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356889999999999999999987655444455653
No 203
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.89 E-value=0.012 Score=66.27 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=80.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccc-ccCCChHHHHHHHHhhhcCccccccCCCchhHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNS-ETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 288 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~-~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 288 (1288)
...+.++|||++|.|||.+|++++......| +.....+.. .....-++..+++... ..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~----------------A~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYRE----------------AAD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHH----------------HHH
Confidence 4578999999999999999999999876543 222111111 1111122333333221 111
Q ss_pred H--HhcceEEEEeccCCCh------------HHH--HHHHhccC----------C----CCCCcEEEEEcCChhHHhh-h
Q 000780 289 R--VRRMKLLIVLDDVNEV------------GQL--KRLIGELD----------Q----FGQGSRIVVTTRDKRVLEK-F 337 (1288)
Q Consensus 289 ~--l~~k~~LlVLDdv~~~------------~~~--~~l~~~l~----------~----~~~gsrIivTTR~~~v~~~-~ 337 (1288)
. -+.++++|++|+++.. .++ ..|+...+ | ..++-.||+||-+.+.+.. +
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 1 1457899999998521 111 23433221 1 2345667888866653321 1
Q ss_pred CC--ccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCch
Q 000780 338 RG--EEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 338 ~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 389 (1288)
.. .-+..| ...+.++-.+++..+.-+.+.+. .-..++++...|-|+
T Consensus 286 lRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 11 122333 34567777777776553332221 224556666666554
No 204
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.88 E-value=0.0007 Score=84.61 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=61.8
Q ss_pred cCCCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCc--hhhhcCCCCCE
Q 000780 836 LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRF 913 (1288)
Q Consensus 836 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~ 913 (1288)
.+|+|++|.+++-.+...--.....++|+|..||+|+++++.+ .+++.+.+|+.|.+.+-.+..-. ..+.+|++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3678888888776554433233466788888888888888887 66788888888888877776433 35677888888
Q ss_pred EEecCCCCC
Q 000780 914 IHLEDFNML 922 (1288)
Q Consensus 914 L~L~~~~~l 922 (1288)
||+|.-...
T Consensus 225 LDIS~~~~~ 233 (699)
T KOG3665|consen 225 LDISRDKNN 233 (699)
T ss_pred eeccccccc
Confidence 888875443
No 205
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.88 E-value=0.0067 Score=74.67 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=44.1
Q ss_pred ccCCCCCcccchhhHHHHHHhhccCC--CCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 183 STDSSNGLVGLNSRIEQIKPFLCMDS--SDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.|....+++|-+..++++..++.... ....++++|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45566789999999999999886532 13456899999999999999999998653
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.032 Score=64.36 Aligned_cols=132 Identities=24% Similarity=0.232 Sum_probs=79.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
.....+.+.|++|.|||+||..++.. ..|+.+-.+. .+..-++.+-.+-. .+...+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-----pe~miG~sEsaKc~--------------~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-----PEDMIGLSESAKCA--------------HIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-----hHHccCccHHHHHH--------------HHHHHHHHh
Confidence 34567889999999999999999864 5677655443 11101111111100 011334444
Q ss_pred HhcceEEEEeccCCChHH------------HHHH---HhccCCCCCCcEEEEEcCChhHHhhhCC--ccceEEEcCCCCH
Q 000780 290 VRRMKLLIVLDDVNEVGQ------------LKRL---IGELDQFGQGSRIVVTTRDKRVLEKFRG--EEKKIYRVNGLEF 352 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~~~------------~~~l---~~~l~~~~~gsrIivTTR~~~v~~~~~~--~~~~~~~l~~L~~ 352 (1288)
-+..=-.||+||++..-+ ++.| +...+..+..--|+-||....++..++. .-...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 455567899999965433 2333 3333333333445668888888888763 1235789999987
Q ss_pred -HHHHHHHhhh
Q 000780 353 -EEAFEHFCNF 362 (1288)
Q Consensus 353 -~ea~~Lf~~~ 362 (1288)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 7777777654
No 207
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.81 E-value=0.0028 Score=69.37 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=59.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhc-Cccccc----cCCC----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTL-SEKLEV----AGPN---- 281 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~-~~~~~~----~~~~---- 281 (1288)
.-+.++|.|.+|+||||||+.++++++.+|+..+++..+.+.. ..+.++.+.+...-. ....-. +...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4567899999999999999999999988888878776654432 345566666654311 111000 1100
Q ss_pred ----chhHHHHHH--h-cceEEEEeccCCChHH
Q 000780 282 ----IPHFTKERV--R-RMKLLIVLDDVNEVGQ 307 (1288)
Q Consensus 282 ----~~~~l~~~l--~-~k~~LlVLDdv~~~~~ 307 (1288)
..-.+.+++ + ++.+|+|+||+....+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 112233444 3 7899999999855433
No 208
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.80 E-value=0.014 Score=74.03 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHhhccC------CCCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 188 NGLVGLNSRIEQIKPFLCMD------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..++|-+..++.+.+.+... .+.....+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999998887631 112345788999999999999999998773
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.78 E-value=0.0099 Score=76.24 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=38.9
Q ss_pred CCcccchhhHHHHHHhhccC------CCCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 188 NGLVGLNSRIEQIKPFLCMD------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..++|-+..++.+...+... .+....++.++|+.|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46899999999888777532 112245688999999999999999998763
No 210
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.76 E-value=0.013 Score=69.12 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHhCCChH----HHHHHHHHHHhccccCCCCCccCCChHHHHHHHHHHHHHhccccccccCCCCCcccch
Q 000780 119 TFGDGFDELKKQFQDKPE----MVLKWRDALTETSHLAGHESAKFRHDAQLVNKIVEDVLKKLEKITVSTDSSNGLVGLN 194 (1288)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~----~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~ 194 (1288)
++..+|.+...+-.-+.+ .++.++.||-++ + -..+.++++++.+.++.... .....+-.++
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~a-------d----V~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~ 68 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQA-------D----VNVKLVKELSKSIKERALEE----EPPKGLTPRE 68 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHhcc----cccccCCcHH
Confidence 455566655433222233 455677777543 1 23345666666665553321 0111122222
Q ss_pred hhH----HHHHHhhccCCC-----CCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 195 SRI----EQIKPFLCMDSS-----DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 195 ~~~----~~l~~~L~~~~~-----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
..+ ++|.+.+..... ....+|.++|.+|+||||+|..++..++.+
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 223 344444433210 246799999999999999999999877654
No 211
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.022 Score=65.38 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=60.9
Q ss_pred cceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCC
Q 000780 292 RMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 368 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 368 (1288)
+++=++|+|+++... .-..|+..+..-.+++.+|.+|.+. .++....+ ....+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS-RCq~~~~~~~~~~~~~~~L~~~~-~--- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS-RCRLHYLAPPPEQYALTWLSREV-T--- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-ccccccCCCCCHHHHHHHHHHcc-C---
Confidence 345578899887654 3566666665545677777666654 45544332 34578999999999998886542 1
Q ss_pred CCchHHHHHHHHHhhhcCCchhHH
Q 000780 369 CPEDLNWHSRSVVSYTKGNPLVLE 392 (1288)
Q Consensus 369 ~~~~~~~l~~~i~~~~~GlPLal~ 392 (1288)
.+ .+.+..++..++|.|....
T Consensus 182 ~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 2236788999999996443
No 212
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.74 E-value=0.0035 Score=72.99 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=42.2
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc--ccceeEEee
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH--EFEGSCFVS 247 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~ 247 (1288)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+++++.+.. .|..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~-----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI-----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4578888888998888854 356778999999999999999987654 344454554
No 213
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.73 E-value=0.0049 Score=65.43 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=66.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEe-eecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV-SDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~-~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
.+|.|+|+.|.||||++.++...+.......++. .+-.+.. . ... ..+. .......+.....+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~-~~~----~~~i---~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-H-ESK----RSLI---NQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-c-cCc----ccee---eecccCCCccCHHHHHHHHhc
Confidence 4789999999999999999888776554444443 2111100 0 000 0011 111111112233466777787
Q ss_pred cceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhh
Q 000780 292 RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 336 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~ 336 (1288)
..+=.+++|.+.+.+.+...+... ..|..++.|+....+...
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 778899999999888766655432 345667777776655443
No 214
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.71 E-value=0.025 Score=62.99 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=22.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+-|.+.|.+|+|||++|++++......
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 456699999999999999999865433
No 215
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.71 E-value=0.016 Score=75.65 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=40.7
Q ss_pred CCcccchhhHHHHHHhhccCC------CCCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 188 NGLVGLNSRIEQIKPFLCMDS------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
..++|.+..++.+...+.... +....++.++|+.|+|||++|+.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 468999999999988876421 1224578899999999999999999876443
No 216
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.70 E-value=0.0013 Score=66.44 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=48.0
Q ss_pred CcccEEEcccCcCccccccccccccccceeeecCccCCCCcchhhhhccccceeecccccCcccCc--ccCCCCCCcEEE
Q 000780 720 TDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS--SFENLPGLEVLF 797 (1288)
Q Consensus 720 ~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~--~l~~l~~L~~L~ 797 (1288)
.+...+||++|.+ ..++. |..++.|.+|.|+.|.+...-|..-.-+++|+.|.+.+|.|.++.+ .+..+|.|++|.
T Consensus 42 d~~d~iDLtdNdl-~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccch-hhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4555666666653 22322 4556666666666666555555544555667777777776665533 245566666666
Q ss_pred eccCCC
Q 000780 798 VEDCSK 803 (1288)
Q Consensus 798 L~~~~~ 803 (1288)
+-+|+.
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 666654
No 217
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.66 E-value=0.048 Score=69.74 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=86.6
Q ss_pred CCcccchhhHHHHHHhhccCC---CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMDS---SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQK 264 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 264 (1288)
.+.+|.+.-.+.+.+++.... .....++.++|++|+||||+|+.++......|-..- +..++ +...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~-------d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVR-------DEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCC-------CHHHhcc
Confidence 468999999999988776321 134568999999999999999999987665543222 11111 1111110
Q ss_pred HHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChHH------HHHHHhccCCC--------------C-CCcE
Q 000780 265 QMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVGQ------LKRLIGELDQF--------------G-QGSR 323 (1288)
Q Consensus 265 ~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~------~~~l~~~l~~~--------------~-~gsr 323 (1288)
.- . .........+.+.+.+. ....-+++||.++.... ...++..+... . ...-
T Consensus 394 ~~-~----~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 394 HR-R----TYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ch-h----ccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 00 0 00000001111222221 12344788999854321 34444443310 1 2233
Q ss_pred EEEEcCChhHHhhhCCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 324 IVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 324 IivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
+|.|+....+...+.. ...++++.+++.+|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~-R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLD-RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhc-ceeeeecCCCCHHHHHHHHHHhh
Confidence 3445544333222211 34578999999999988887766
No 218
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.65 E-value=0.042 Score=71.03 Aligned_cols=53 Identities=28% Similarity=0.446 Sum_probs=40.2
Q ss_pred CCcccchhhHHHHHHhhccC---CCCCceEEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 188 NGLVGLNSRIEQIKPFLCMD---SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
...+|.+.-.+.+.+++... ......++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35789988888888765421 112345789999999999999999999876554
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.011 Score=69.31 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=87.8
Q ss_pred CCCcccchhhHHHHHHhhccCCC---------CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCC
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSS---------DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAG 257 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~ 257 (1288)
..++=|.+..+.++.+++..-.. ...+=|.++|++|.|||.||+++++...--|-.+.- +
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA---------p-- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA---------P-- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecc---------h--
Confidence 46788999999999887754221 235668899999999999999999887554422211 1
Q ss_pred ChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChH--------H-----HHHHHhccCCC------
Q 000780 258 GLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--------Q-----LKRLIGELDQF------ 318 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--------~-----~~~l~~~l~~~------ 318 (1288)
++.+...++ ....+.+.+.+.-..-++++++|+++... + +..|+..++..
T Consensus 258 -------eivSGvSGE----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 -------EIVSGVSGE----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -------hhhcccCcc----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 111111110 01111133333445568999999985421 1 33444433321
Q ss_pred CCCcEEEE-EcCChhHHhhhC--CccceEEEcCCCCHHHHHHHHhhhhc
Q 000780 319 GQGSRIVV-TTRDKRVLEKFR--GEEKKIYRVNGLEFEEAFEHFCNFAF 364 (1288)
Q Consensus 319 ~~gsrIiv-TTR~~~v~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af 364 (1288)
+.+--||- |+|...+-..+. +.-++.+.+.--++.+-.++++..+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 22322332 445443322222 12455677888888777777766553
No 220
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.64 E-value=0.14 Score=59.03 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=66.6
Q ss_pred eEEEEeccCCChH--------HHHHHHhccCCCCCCcEEEEEcCChhHHh----hhCCccceEEEcCCCCHHHHHHHHhh
Q 000780 294 KLLIVLDDVNEVG--------QLKRLIGELDQFGQGSRIVVTTRDKRVLE----KFRGEEKKIYRVNGLEFEEAFEHFCN 361 (1288)
Q Consensus 294 ~~LlVLDdv~~~~--------~~~~l~~~l~~~~~gsrIivTTR~~~v~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~ 361 (1288)
|-+||+||..... .+.++...+.. .+-.+||++|-+..... .+...+.+.+.+...+.+-|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999984321 12222222222 34567888887764433 44445677899999999999999988
Q ss_pred hhcCCCCC-------------C-----chHHHHHHHHHhhhcCCchhHHHHhhhcCC
Q 000780 362 FAFKENHC-------------P-----EDLNWHSRSVVSYTKGNPLVLEVLGSSLCL 400 (1288)
Q Consensus 362 ~af~~~~~-------------~-----~~~~~l~~~i~~~~~GlPLal~~lg~~L~~ 400 (1288)
+.-..... . .....-....+..+||--.=|..+++.++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 87432110 0 122333466677788887778888777753
No 221
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.62 E-value=0.019 Score=67.60 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+......
T Consensus 21 ~i~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hccCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 7999999999998887653 35779999999999999999986543
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.60 E-value=0.013 Score=59.83 Aligned_cols=139 Identities=15% Similarity=0.237 Sum_probs=72.5
Q ss_pred cchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc--------------------ccceeEEeeeccc
Q 000780 192 GLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH--------------------EFEGSCFVSDVRG 251 (1288)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~F~~~~~~~~~~~ 251 (1288)
|-+...+.|...+..+ .-...+.++|..|+||+|+|+++++.+-. ..+...++.....
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc
Confidence 4455667777777553 23567889999999999999999986422 1222333321100
Q ss_pred ccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEEEcC
Q 000780 252 NSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTR 329 (1288)
Q Consensus 252 ~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIivTTR 329 (1288)
... -.++++. ++...+.... ..+++=++|+||++.. +...+|+..+.....++++|++|+
T Consensus 79 -~~~-i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 79 -KKS-IKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp -SSS-BSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred -cch-hhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 000 1222222 2222211110 0123447889998764 346677766666667889988888
Q ss_pred Chh-HHhhhCCccceEEEcCCCC
Q 000780 330 DKR-VLEKFRGEEKKIYRVNGLE 351 (1288)
Q Consensus 330 ~~~-v~~~~~~~~~~~~~l~~L~ 351 (1288)
+.. +.....+ ....+.+++++
T Consensus 141 ~~~~il~TI~S-Rc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRS-RCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHT-TSEEEEE----
T ss_pred ChHHChHHHHh-hceEEecCCCC
Confidence 764 3333322 34566666553
No 223
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.025 Score=67.57 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=87.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
..-|.|.|..|+|||+||+++++.+... ..+++..+.+..-....++.+|+.+- ..+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHh
Confidence 4568899999999999999999977633 33333333332222234555555443 45556677
Q ss_pred cceEEEEeccCCChH--------H-------HHHHHh-ccCC-CCCCcE--EEEEcCChhHHhh-hC--CccceEEEcCC
Q 000780 292 RMKLLIVLDDVNEVG--------Q-------LKRLIG-ELDQ-FGQGSR--IVVTTRDKRVLEK-FR--GEEKKIYRVNG 349 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~~--------~-------~~~l~~-~l~~-~~~gsr--IivTTR~~~v~~~-~~--~~~~~~~~l~~ 349 (1288)
..+-+|||||++-.. | +..++. .... ...+.+ +|.|....+-... +. ........++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 789999999984211 1 111111 0011 123444 3444433322111 11 01334678888
Q ss_pred CCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCC-chhHHHH
Q 000780 350 LEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN-PLVLEVL 394 (1288)
Q Consensus 350 L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~l 394 (1288)
+...+..++++... ..+...... +...-+..+|+|. |.-+.++
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~~~~-~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSDITM-DDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHH-Hhhhhhhhh-HHHHHHHHhcCCccchhHHHH
Confidence 98888888877543 222211112 2223367777774 4444443
No 224
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.55 E-value=0.0022 Score=64.78 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=54.9
Q ss_pred EEEccccccCC-CchHHHHHHHHhhcC-CcceEecCCCCCC--CCCchHHHHHHhhccceEEEEeccCc
Q 000780 13 VFLNFRGEDTR-TSFTCHLYDNLYERK-KIRTFIDDEGLRR--GDEISPALLNAIQGSKISVVIFSKDY 77 (1288)
Q Consensus 13 vfis~~~~d~r-~~~~~~l~~~l~~~~-g~~~~~d~~~~~~--g~~~~~~l~~ai~~s~~~i~v~S~~y 77 (1288)
|||||+.+... .++|..|++.| ++. |+.|.+|-++... +..+..++.++++++..+|+|+|+.|
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L-~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFL-RQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHH-HhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 99999874422 46788999999 888 9999999987744 77899999999999999999999655
No 225
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.54 E-value=0.00037 Score=73.08 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=67.1
Q ss_pred cCceeecCCCcccc-----ccCccccccCcccEEEcccCcCcc----ccc-------cccccccccceeeecCccCCCCc
Q 000780 697 GKVTRLYLGQSAIE-----EVPSSIECLTDLEVLDLRGCKRLK----RIS-------TSFCKLRSLVTLILLGCLNLEHF 760 (1288)
Q Consensus 697 ~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~Ls~~~~l~----~lp-------~~l~~l~~L~~L~L~~~~~~~~~ 760 (1288)
..+..++|++|.|. .+...|.+-.+|+..+++.-. ++ .+| ..+-+++.|+..+||+|-....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 34566777777776 244456667788888887632 22 122 23557888899999888777776
Q ss_pred chhh----hhccccceeecccccCcccCcc--------------cCCCCCCcEEEeccCCC
Q 000780 761 PEIL----EKMEHLKRIYSDRTPITELPSS--------------FENLPGLEVLFVEDCSK 803 (1288)
Q Consensus 761 p~~l----~~l~~L~~L~l~~~~i~~lp~~--------------l~~l~~L~~L~L~~~~~ 803 (1288)
|+.+ .+-+.|++|.+++|.+..+... ..+-|.|+......|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 6554 4557788888888877644321 23445666666665553
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.012 Score=73.03 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=74.3
Q ss_pred CCcccchhhHHHHHHhhccC------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMD------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
..++|-+..++.+.+.+... .+....+....|+.|||||-||++++..+-+.=+.-+-+ +.++..+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~Ek------ 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEK------ 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHH------
Confidence 46899999999988877532 223456778899999999999999998764332222322 22222222
Q ss_pred HHHHHHhhhcCccccccCCCchhHHHHHHhcceE-EEEeccCCCh--HHHHHHHhccCCC
Q 000780 262 LQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKL-LIVLDDVNEV--GQLKRLIGELDQF 318 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~-LlVLDdv~~~--~~~~~l~~~l~~~ 318 (1288)
.-.+.+.+..+..-+-+-...+-+..++++| +|.||.|+.. +.++-|+..++.+
T Consensus 564 ---HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 ---HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2222333333332221113556677788877 7778999754 4477777766643
No 227
>PRK08118 topology modulation protein; Reviewed
Probab=96.49 E-value=0.0049 Score=63.33 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=25.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhc---ccceeEE
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSH---EFEGSCF 245 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~---~F~~~~~ 245 (1288)
.|.|+|++|+||||||++++++..- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5789999999999999999997643 3555554
No 228
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.49 E-value=0.0062 Score=60.64 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
|.++|.+|+|||+||+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.004 Score=69.09 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc-cceeEEee
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVS 247 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 247 (1288)
....+.++|..|+|||.||.++++.+..+ ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 34678899999999999999999987665 45566665
No 230
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.46 E-value=0.0074 Score=63.29 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=58.0
Q ss_pred chhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH-h-hcccceeEEeeecccccccCCC-h-HHHHHHHH-
Q 000780 193 LNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ-F-SHEFEGSCFVSDVRGNSETAGG-L-EHLQKQML- 267 (1288)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~F~~~~~~~~~~~~~~~~~~-l-~~l~~~ll- 267 (1288)
+..+-+...+.|. ...+|.+.|++|.|||.||.+.+-+ + .++|+..++....-+..+. -+ + -.+.+++.
T Consensus 5 ~~~~Q~~~~~al~-----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~-lGflpG~~~eK~~p 78 (205)
T PF02562_consen 5 KNEEQKFALDALL-----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED-LGFLPGDLEEKMEP 78 (205)
T ss_dssp -SHHHHHHHHHHH-----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-----SS---------T
T ss_pred CCHHHHHHHHHHH-----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc-cccCCCCHHHHHHH
Confidence 4445555555554 3468999999999999999988863 2 4678888777543322111 11 0 11111111
Q ss_pred ------hhhcCccccccCCCchhHHH----------HHHhcc---eEEEEeccCCCh--HHHHHHHhccCCCCCCcEEEE
Q 000780 268 ------STTLSEKLEVAGPNIPHFTK----------ERVRRM---KLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVV 326 (1288)
Q Consensus 268 ------~~l~~~~~~~~~~~~~~~l~----------~~l~~k---~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrIiv 326 (1288)
..+..- -+....+.+. ..++++ ..+||+|++.+. +++..++.. .+.|||||+
T Consensus 79 ~~~p~~d~l~~~----~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 79 YLRPIYDALEEL----FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp TTHHHHHHHTTT----S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHH----hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 001000 0000001111 122332 579999999654 467777655 478999999
Q ss_pred EcCC
Q 000780 327 TTRD 330 (1288)
Q Consensus 327 TTR~ 330 (1288)
+--.
T Consensus 152 ~GD~ 155 (205)
T PF02562_consen 152 TGDP 155 (205)
T ss_dssp EE--
T ss_pred ecCc
Confidence 9543
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.46 E-value=0.026 Score=66.50 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
...++.++|.+|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988765
No 232
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.096 Score=59.97 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=28.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...++|+++|++|+||||++..++..+..+-..+.++
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 3458999999999999999999998765443334444
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.011 Score=64.94 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=28.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 456688999999999999999999888433444454
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=96.43 E-value=0.026 Score=66.57 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998877655
No 235
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.40 E-value=0.014 Score=75.49 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=39.8
Q ss_pred CCcccchhhHHHHHHhhccC------CCCCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 188 NGLVGLNSRIEQIKPFLCMD------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
..++|-+..++.+.+.+... .+....++.++|+.|+|||.+|++++..+.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 57899999999998877431 1133457899999999999999999987643
No 236
>PRK07261 topology modulation protein; Provisional
Probab=96.40 E-value=0.011 Score=60.96 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 237
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.40 E-value=0.011 Score=63.33 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=29.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
-.++|+|..|.|||||++.+.......|..++.+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 35679999999999999999999999996665553
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.33 E-value=0.015 Score=66.38 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.-+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999998766555666664
No 239
>PHA00729 NTP-binding motif containing protein
Probab=96.32 E-value=0.043 Score=58.34 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+...|.|+|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998754
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.11 Score=59.47 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=58.7
Q ss_pred eEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCC-hhHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCC
Q 000780 294 KLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP 370 (1288)
Q Consensus 294 ~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 370 (1288)
+=++|+|+++... ....|+..+..-.+++.+|.+|.+ ..+.....+ ....+.+.+++.++..+.+.... . .
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 3477889887543 466777666655667766655555 455544332 45689999999999999987652 1 1
Q ss_pred chHHHHHHHHHhhhcCCchhHHHH
Q 000780 371 EDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 371 ~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
. ...++..++|.|+....+
T Consensus 207 -~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754443
No 241
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.29 E-value=0.11 Score=61.00 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
...+|.++|..|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998866554
No 242
>PRK14974 cell division protein FtsY; Provisional
Probab=96.29 E-value=0.078 Score=60.53 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
...+|+++|++|+||||++..++..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876654
No 243
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.0045 Score=62.75 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=33.4
Q ss_pred CCCCcEEEecCCCCCCCch--hhcCCCCCcEEEccCCCCccCch----hhhcCCCCCEEEecC
Q 000780 862 LSAMGLLHISDYAVREIPQ--EIAYLSSLEILYLSGNNFESLPA----IIKQMSQLRFIHLED 918 (1288)
Q Consensus 862 ~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 918 (1288)
+++|..|.+.+|++.++.+ .+..+|.|++|.+-+|.++.-.. .+..+|+|+.||..+
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3445555555555544321 24556777777777777664432 355677777777765
No 244
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.27 E-value=0.021 Score=74.27 Aligned_cols=119 Identities=19% Similarity=0.243 Sum_probs=66.9
Q ss_pred CCcccchhhHHHHHHhhccC------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMD------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEH 261 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~ 261 (1288)
..++|-+..++.+...+... .+.....+.++|+.|+|||+||+.+++.+-..-...+.+ +..+..+. +.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~-~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEK-HTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccc-ccHHH
Confidence 56899999999988777521 112245677899999999999999998764332222222 22222222 22222
Q ss_pred HHHHHHhhhcCccccccCCCchhHHHHHHhcce-EEEEeccCCChH--HHHHHHhccC
Q 000780 262 LQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMK-LLIVLDDVNEVG--QLKRLIGELD 316 (1288)
Q Consensus 262 l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~-~LlVLDdv~~~~--~~~~l~~~l~ 316 (1288)
+ . +.. ...-+..-...+.+.++.++ -+++||+++... .++.|+..+.
T Consensus 587 l----~---g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 L----I---GSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred h----c---CCC-CcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 1 111 11111111134555566555 588899997543 3566665554
No 245
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.23 E-value=0.015 Score=66.37 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc-ceeEEeeecccccccCCChHHHHHHHHhhhcCcccccc
Q 000780 200 IKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVA 278 (1288)
Q Consensus 200 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~ 278 (1288)
+.+.+..-. .-+.++|+|.+|+|||||++.+++.+..+. +..+++..+ .+....+.++.+.+...+.....+..
T Consensus 123 vID~l~PiG--kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 123 VVDLVAPIG--KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhheeecC--CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 555554432 335668999999999999999999876654 333333333 23335677888887766443221111
Q ss_pred CC---Cc---hhHHHHHH--hcceEEEEeccCCCh
Q 000780 279 GP---NI---PHFTKERV--RRMKLLIVLDDVNEV 305 (1288)
Q Consensus 279 ~~---~~---~~~l~~~l--~~k~~LlVLDdv~~~ 305 (1288)
.. .. ...+.+++ ++++++||+|++...
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 01 11111222 478999999998544
No 246
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.20 E-value=0.027 Score=70.94 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=73.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 292 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 292 (1288)
+-|.++|++|.|||++|+.++......|- .+. . ..+....... ....+...+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~----------~~~~~~~~g~--------~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-G----------SDFVEMFVGV--------GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-h----------HHhHHhhhcc--------cHHHHHHHHHHHHhc
Confidence 34889999999999999999987654431 111 0 0111111000 000011223333344
Q ss_pred ceEEEEeccCCChH----------------HHHHHHhccCCCC--CCcEEEEEcCChhHHhh-hC--CccceEEEcCCCC
Q 000780 293 MKLLIVLDDVNEVG----------------QLKRLIGELDQFG--QGSRIVVTTRDKRVLEK-FR--GEEKKIYRVNGLE 351 (1288)
Q Consensus 293 k~~LlVLDdv~~~~----------------~~~~l~~~l~~~~--~gsrIivTTR~~~v~~~-~~--~~~~~~~~l~~L~ 351 (1288)
.+.+|++|+++... .+..++..++.+. .+.-+|.||...+.... .. +..++.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 67899999985531 1344444444332 34445557766554322 11 1245678899999
Q ss_pred HHHHHHHHhhhhcC
Q 000780 352 FEEAFEHFCNFAFK 365 (1288)
Q Consensus 352 ~~ea~~Lf~~~af~ 365 (1288)
.++..+++..+.-+
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887643
No 247
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.054 Score=64.70 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=87.8
Q ss_pred CcccchhhHHHHHHhhccCC----------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCC
Q 000780 189 GLVGLNSRIEQIKPFLCMDS----------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGG 258 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~ 258 (1288)
++=|.++-..+|.+...... -...+-|..+|++|.|||++|+++++.-+-.|-.+- .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk---------g---- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK---------G---- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc---------C----
Confidence 44457776666665442210 034677889999999999999999998766653320 0
Q ss_pred hHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh-------------HHHHHHHhccCCCCCCcEEE
Q 000780 259 LEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV-------------GQLKRLIGELDQFGQGSRIV 325 (1288)
Q Consensus 259 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~~gsrIi 325 (1288)
..+......+ ....+.+.+++.-+--+.+|.||.++.. ..+..|+..++.......|+
T Consensus 502 -pEL~sk~vGe--------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 502 -PELFSKYVGE--------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -HHHHHHhcCc--------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 0111111100 0000112222222334678888877432 12566777776555444443
Q ss_pred E---EcCChhHHhhhC--CccceEEEcCCCCHHHHHHHHhhhhcCC
Q 000780 326 V---TTRDKRVLEKFR--GEEKKIYRVNGLEFEEAFEHFCNFAFKE 366 (1288)
Q Consensus 326 v---TTR~~~v~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 366 (1288)
| |-|...+-..+- +..+..+.++.-+.+...++|..++-+-
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 3 334443333221 1256788898888888999999988543
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.17 E-value=0.0042 Score=60.12 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 249
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.018 Score=61.95 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=82.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccc-cCCChHHHHHHHHhhhcCcc-------ccccCCCc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSE-TAGGLEHLQKQMLSTTLSEK-------LEVAGPNI 282 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~-~~~~l~~l~~~ll~~l~~~~-------~~~~~~~~ 282 (1288)
...++||+|-+|.||||+|+.+..-.... .+.+++..-. ... ......+...+++...+... .+.++.+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~-i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD-ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc-hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45789999999999999999999755433 3344443211 000 00223334445555433221 22244444
Q ss_pred h-hHHHHHHhcceEEEEeccC------CChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcCCCCHHHH
Q 000780 283 P-HFTKERVRRMKLLIVLDDV------NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEA 355 (1288)
Q Consensus 283 ~-~~l~~~l~~k~~LlVLDdv------~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea 355 (1288)
+ -.+.+.+.-++-++|.|.- .-..|.-.++..+.. ..|-..+..|.|-.++..+.......|.-.-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~ 194 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCH
Confidence 4 3466778888999999964 333444444444332 3456678888888888776432222232223344445
Q ss_pred HHHHh
Q 000780 356 FEHFC 360 (1288)
Q Consensus 356 ~~Lf~ 360 (1288)
.++|.
T Consensus 195 ~~~~~ 199 (268)
T COG4608 195 EEVFS 199 (268)
T ss_pred HHHhh
Confidence 55554
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.11 E-value=0.01 Score=60.76 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
++.|+|.+|.||||+|+.++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987766555566665
No 251
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.07 E-value=0.013 Score=59.98 Aligned_cols=79 Identities=8% Similarity=0.058 Sum_probs=45.1
Q ss_pred EEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhc--
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR-- 292 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~-- 292 (1288)
+.|.|.+|.|||++|.++... ....++|+..... .+. .+++.+..............+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~-----~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA-----FDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc-----CCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999999865 2346677753221 222 34555444322222222223333445555532
Q ss_pred ceEEEEeccC
Q 000780 293 MKLLIVLDDV 302 (1288)
Q Consensus 293 k~~LlVLDdv 302 (1288)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347899976
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.0065 Score=59.37 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=30.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcc-cceeEE-eeeccc
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCF-VSDVRG 251 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~-~~~~~~ 251 (1288)
.--|+|.||+|+||||+++.+.+.++.+ |...=| ...+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 3568999999999999999999988766 665444 344443
No 253
>PRK06696 uridine kinase; Validated
Probab=96.05 E-value=0.01 Score=64.47 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=36.2
Q ss_pred chhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 193 LNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
|++.+++|.+.+.....+...+|+|.|.+|.||||+|+++...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55566666666654323568899999999999999999999887544
No 254
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.02 E-value=0.033 Score=68.37 Aligned_cols=49 Identities=31% Similarity=0.520 Sum_probs=39.1
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
|....+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999998876542 3355679999999999999999874
No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.97 E-value=0.029 Score=63.47 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..+-+.++|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3467889999999999999999998765544455553
No 256
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.96 E-value=0.0063 Score=68.99 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=41.3
Q ss_pred CcccchhhHHHHHHhhccCC---CCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 189 GLVGLNSRIEQIKPFLCMDS---SDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+++|.++.++++.+++.... +...++++++|++|.||||||+++++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 79999999999999886532 23468899999999999999999998653
No 257
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.072 Score=60.93 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=40.9
Q ss_pred ceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCChh-HHhhhCCccceEEEcCCCCHHHHHHHHhhh
Q 000780 293 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 293 k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
.|++ |+|+++..+ ....++..+.....+..+|++|.+.. +.....+ ....+.+.+++.+++.+.+...
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S-Rc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS-RCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH-HhhhhcCCCCCHHHHHHHHHhc
Confidence 3444 558776433 33444443333334566777777654 4433221 4568899999999999888654
No 258
>PRK04296 thymidine kinase; Provisional
Probab=95.94 E-value=0.019 Score=60.45 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=60.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc--ccC-CCchhHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE--VAG-PNIPHFTKER 289 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~~~-~~~~~~l~~~ 289 (1288)
.++.|+|..|.||||+|..++.+...+...++++.- ..+...+.. .+.+.++..... ... .++...+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~---~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP---AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec---cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 477899999999999999999987666544444421 001101111 223333211111 111 111122222
Q ss_pred HhcceEEEEeccCCC--hHHHHHHHhccCCCCCCcEEEEEcCChh
Q 000780 290 VRRMKLLIVLDDVNE--VGQLKRLIGELDQFGQGSRIVVTTRDKR 332 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsrIivTTR~~~ 332 (1288)
..++.-+||+|.+.- .+++..+...+. ..|-.||+|.++.+
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 223456899999854 344555554432 46788999998744
No 259
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.92 E-value=0.13 Score=62.36 Aligned_cols=130 Identities=16% Similarity=0.268 Sum_probs=68.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcc---c-----ceeEEeeecccccccCCCh------------HHHHHHHHhhhc
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHE---F-----EGSCFVSDVRGNSETAGGL------------EHLQKQMLSTTL 271 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---F-----~~~~~~~~~~~~~~~~~~l------------~~l~~~ll~~l~ 271 (1288)
-..|+|+|+.|+|||||.+.+....... . -...|+..-+........+ ..-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3568999999999999999997644222 1 1122322111110000011 122222233322
Q ss_pred Cccccc-------cCCC-chhHHHHHHhcceEEEEecc------CCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhh
Q 000780 272 SEKLEV-------AGPN-IPHFTKERVRRMKLLIVLDD------VNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 272 ~~~~~~-------~~~~-~~~~l~~~l~~k~~LlVLDd------v~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~ 337 (1288)
-..... ++.+ ..-.+...+-..+-++|||. ++..+.++..+..+ +| .||+.|.|+......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhh
Confidence 111111 1111 11233445556788999994 44455555555443 24 588889999988877
Q ss_pred CCccceEEEcCC
Q 000780 338 RGEEKKIYRVNG 349 (1288)
Q Consensus 338 ~~~~~~~~~l~~ 349 (1288)
..+++.+.+
T Consensus 503 ---a~~i~~~~~ 511 (530)
T COG0488 503 ---ATRIWLVED 511 (530)
T ss_pred ---cceEEEEcC
Confidence 456777664
No 260
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.089 Score=60.94 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc---------------------ceeEEee
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF---------------------EGSCFVS 247 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~~~~~~ 247 (1288)
.++|-+....++..+..... .....+.++|++|+||||+|.++++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 35677777777777776432 2334588999999999999999999765332 1222221
Q ss_pred ecccccccCCC---hHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChHH--HHHHHhccCCCCCCc
Q 000780 248 DVRGNSETAGG---LEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVGQ--LKRLIGELDQFGQGS 322 (1288)
Q Consensus 248 ~~~~~~~~~~~---l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~l~~~l~~~~~gs 322 (1288)
. ++. .. ..+..+++......... .++.-++|+|+++.... -.++...+.......
T Consensus 81 ~----s~~-~~~~i~~~~vr~~~~~~~~~~~---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 P----SDL-RKIDIIVEQVRELAEFLSESPL---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred c----ccc-CCCcchHHHHHHHHHHhccCCC---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 1 111 11 12222333222111100 24466899999986543 555665555556778
Q ss_pred EEEEEcCCh-hHHhhhCCccceEEEcCCCCHHH
Q 000780 323 RIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEE 354 (1288)
Q Consensus 323 rIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~e 354 (1288)
++|++|.+. .+.....+ ....+++.+.+..+
T Consensus 141 ~~il~~n~~~~il~tI~S-Rc~~i~f~~~~~~~ 172 (325)
T COG0470 141 RFILITNDPSKILPTIRS-RCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEEcCChhhccchhhh-cceeeecCCchHHH
Confidence 888888744 33333322 34566676643333
No 261
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.84 E-value=0.024 Score=59.49 Aligned_cols=174 Identities=18% Similarity=0.243 Sum_probs=98.3
Q ss_pred CCCcccchhhHHH---HHHhhccCC---CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChH
Q 000780 187 SNGLVGLNSRIEQ---IKPFLCMDS---SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 187 ~~~~vGr~~~~~~---l~~~L~~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
.++.||-+....+ |.+.|.... +-..+-|..+|++|.|||.+|+++++..+.-| ... .. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~v-----ka-----t 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLV-----KA-----T 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEe-----ch-----H
Confidence 3568888766543 344554321 13478899999999999999999998754332 111 00 1
Q ss_pred HHHHHHHhh-hcCccccccCCC-chhHHHHHHhcceEEEEeccCCCh--------------HHHHHHHhccCCC--CCCc
Q 000780 261 HLQKQMLST-TLSEKLEVAGPN-IPHFTKERVRRMKLLIVLDDVNEV--------------GQLKRLIGELDQF--GQGS 322 (1288)
Q Consensus 261 ~l~~~ll~~-l~~~~~~~~~~~-~~~~l~~~l~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~~--~~gs 322 (1288)
+++.+ .+ ++.. +.+...+.-+.-++.+.+|.++.. +...+|+..++.. +.|-
T Consensus 186 ----~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 186 ----ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred ----HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 11111 11 1111 112222222345899999987432 2366777776643 3455
Q ss_pred EEEEEcCChhHHhh-hCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCC
Q 000780 323 RIVVTTRDKRVLEK-FRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 323 rIivTTR~~~v~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 387 (1288)
..|-.|-+..++.. ..+.-...++..--+++|-.+++..++-.-.-+-+.. .+.++++.+|.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 55666665555432 2222344677778899999999998874322221111 45566666665
No 262
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.34 Score=50.70 Aligned_cols=150 Identities=21% Similarity=0.382 Sum_probs=85.1
Q ss_pred CCccc-chhhHHHHHHhhccCC----------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccC
Q 000780 188 NGLVG-LNSRIEQIKPFLCMDS----------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETA 256 (1288)
Q Consensus 188 ~~~vG-r~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~ 256 (1288)
-.+|| .|..++++.+.+...- -.+.+-|.++|++|.|||-||+++++. ..+.|+. ++
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir-vs------ 213 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VS------ 213 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-ec------
Confidence 34554 4666777766554321 034567889999999999999999974 2333443 21
Q ss_pred CChHHHHHHHHhhhcCccccccCCCchhHHHHHH----hcceEEEEeccCCCh-------------H-H--HHHHHhccC
Q 000780 257 GGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV----RRMKLLIVLDDVNEV-------------G-Q--LKRLIGELD 316 (1288)
Q Consensus 257 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l----~~k~~LlVLDdv~~~-------------~-~--~~~l~~~l~ 316 (1288)
+- .+.++...+ +. +.+++.+ ..-+-.|..|.++.. + | .-.++..++
T Consensus 214 -gs-elvqk~ige---------gs---rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 214 -GS-ELVQKYIGE---------GS---RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred -hH-HHHHHHhhh---------hH---HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 11 222222211 11 2222221 334677888877431 1 1 334555555
Q ss_pred CCC--CCcEEEEEcCChhHHhhh---CCccceEEEcCCCCHHHHHHHHhhhh
Q 000780 317 QFG--QGSRIVVTTRDKRVLEKF---RGEEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 317 ~~~--~gsrIivTTR~~~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
.|. ..-+||+.|..-+++... .+..++.++.++-+++...+++.-+.
T Consensus 280 gfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 280 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 443 456778777554443321 11256778999999888888887664
No 263
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.78 E-value=0.047 Score=56.81 Aligned_cols=37 Identities=27% Similarity=0.568 Sum_probs=32.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
...+|.+.|+.|.||||+|++++.++..++...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4568999999999999999999999988877777773
No 264
>PRK04132 replication factor C small subunit; Provisional
Probab=95.77 E-value=0.087 Score=66.95 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=89.0
Q ss_pred Ee--cCCchHHHHHHHHHHHhhc-ccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcce
Q 000780 218 WG--MGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMK 294 (1288)
Q Consensus 218 ~G--~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~ 294 (1288)
.| +.|+||||+|.++++++-+ .+...+.--+. ++. .+...+++.+ ....... +. -..+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~-rgid~IR~iI-k~~a~~~-~~------------~~~~~ 631 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDE-RGINVIREKV-KEFARTK-PI------------GGASF 631 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCc-ccHHHHHHHH-HHHHhcC-Cc------------CCCCC
Confidence 37 7899999999999998633 33333222222 221 3444433322 2211000 00 01234
Q ss_pred EEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCc
Q 000780 295 LLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPE 371 (1288)
Q Consensus 295 ~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 371 (1288)
-++|||+++... +...|+..+.......++|.+|.+. .+.....+ ....+++++++.++-.+.+.+.+-..+..
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi~-- 708 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 708 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 689999998754 4666666665545667777666554 34333322 46789999999999988887655322211
Q ss_pred hHHHHHHHHHhhhcCCch
Q 000780 372 DLNWHSRSVVSYTKGNPL 389 (1288)
Q Consensus 372 ~~~~l~~~i~~~~~GlPL 389 (1288)
-..+....|++.++|-+.
T Consensus 709 i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMR 726 (846)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 113457889999999874
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.75 E-value=0.052 Score=60.44 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=28.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...++++++|++|+||||++..++..++.+-..+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4568999999999999999999998776553344444
No 266
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.71 E-value=0.033 Score=60.68 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 198 EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 198 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..|.++|..+- ..-.++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555664432 45689999999999999999999987766667788886
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.71 E-value=0.17 Score=60.94 Aligned_cols=204 Identities=14% Similarity=0.139 Sum_probs=116.0
Q ss_pred CCCCcccchhhHHHHHHhhccC--CCCCceEEEEEecCCchHHHHHHHHHHHhh-----cccceeEEeeecccccccCCC
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMD--SSDTVQIVGIWGMGGIGKTTLAKAIFDQFS-----HEFEGSCFVSDVRGNSETAGG 258 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~F~~~~~~~~~~~~~~~~~~ 258 (1288)
.+..+=+|+.+..+|...+..- .......+-|.|.+|.|||..+..|.+.++ ++-+.-.|+. +. .-.-.+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN--gm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN--GLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec--ceeecC
Confidence 5677889999999999887642 113445889999999999999999998543 2222222222 10 111245
Q ss_pred hHHHHHHHHhhhcCccccccCCCchhHHHHHHh-----cceEEEEeccCCChHH--HHHHHhccCCC-CCCcEEEEEcC-
Q 000780 259 LEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR-----RMKLLIVLDDVNEVGQ--LKRLIGELDQF-GQGSRIVVTTR- 329 (1288)
Q Consensus 259 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~~~~~--~~~l~~~l~~~-~~gsrIivTTR- 329 (1288)
..++...|...+......... ..+.+..+.. .+..++++|+++..-. -+-+-..+.|- .++|+++|-+=
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~--al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDA--ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHHhcccCcccHHH--HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 678888888887655443321 1234444443 3468888898754322 12233334453 47888765432
Q ss_pred Ch----------hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCC-CCchHHHHHHHHHhhhcCCchhHHHHhhh
Q 000780 330 DK----------RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH-CPEDLNWHSRSVVSYTKGNPLVLEVLGSS 397 (1288)
Q Consensus 330 ~~----------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 397 (1288)
+. .+...+ ....+...+-+.++-.+....+..+-.. .....+-+|++|+...|..-.|+.+.-+.
T Consensus 549 NTmdlPEr~l~nrvsSRl---g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRL---GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhc---cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 111112 2335666777777777776655433211 11223334566666666666666655443
No 268
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.064 Score=64.05 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=104.8
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc------ccceeEEeeecccccccCC
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH------EFEGSCFVSDVRGNSETAG 257 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~~~~~~~~~~~ 257 (1288)
|....++||-+.-.+.|...+..+. -..-....|+-|+||||+||-++..+-. ..-..|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~----------- 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS----------- 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-----------
Confidence 4556788999999999999987643 2345568999999999999999975421 11111211
Q ss_pred ChHHHHHHHHhhhcCccccc-----cCCCchhHHHHHH-----hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEE
Q 000780 258 GLEHLQKQMLSTTLSEKLEV-----AGPNIPHFTKERV-----RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIV 325 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~~~~~~-----~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIi 325 (1288)
-+.+...-..+-..+ .+.+-.+.+.+.. +++.=+.|+|.|.... .+.+|+..+..-.+.-..|
T Consensus 79 -----Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FI 153 (515)
T COG2812 79 -----CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFI 153 (515)
T ss_pred -----hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEE
Confidence 111111100000001 1111113333332 2334478899997654 4888887776544555556
Q ss_pred EEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCC
Q 000780 326 VTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 387 (1288)
Q Consensus 326 vTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 387 (1288)
..|++. .+....-+ ....|..+.++.++-...+...+-..+... ..+...-|++..+|-
T Consensus 154 lATTe~~Kip~TIlS-Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs 213 (515)
T COG2812 154 LATTEPQKIPNTILS-RCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGS 213 (515)
T ss_pred EecCCcCcCchhhhh-ccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCC
Confidence 555554 33322211 456899999999988888877664333221 223345566666664
No 269
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.66 E-value=0.026 Score=59.48 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=27.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.+++.++|+.|+||||.+.+++.+.+.+-..+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 378999999999999999999987766633444443
No 270
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.00098 Score=82.15 Aligned_cols=82 Identities=24% Similarity=0.258 Sum_probs=38.6
Q ss_pred cCCCCcEEEcCCCCCCCcccccc-ccCCCCCcEEEecCCC-CCC--CchhhcCCCCCcEEEccCCCCc---cCchhhhcC
Q 000780 836 LSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYA-VRE--IPQEIAYLSSLEILYLSGNNFE---SLPAIIKQM 908 (1288)
Q Consensus 836 ~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~-l~~--lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l 908 (1288)
.+++|+.|+++.+...++..... ...+++|+.|.+.+|. +++ +-.....+++|++|+|++|... .+.....++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34566666666666433332222 2225566666655555 332 2233344556666666665432 122233344
Q ss_pred CCCCEEEec
Q 000780 909 SQLRFIHLE 917 (1288)
Q Consensus 909 ~~L~~L~L~ 917 (1288)
++|+.|.+.
T Consensus 321 ~~l~~l~~~ 329 (482)
T KOG1947|consen 321 PNLRELKLL 329 (482)
T ss_pred cchhhhhhh
Confidence 544444433
No 271
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.61 E-value=0.056 Score=62.86 Aligned_cols=50 Identities=26% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
+.++...|..+- ..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345556664432 44579999999999999999999987766555677775
No 272
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.074 Score=66.13 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=85.4
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc-cc-----eeEEeeecccccccCCChH
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE-FE-----GSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~-----~~~~~~~~~~~~~~~~~l~ 260 (1288)
-+..+|||.+++++.+.|..-. ...+ .++|-+|+|||++|.-++.++... -+ ..++--++ .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~-KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~----------g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRT-KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL----------G 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccC-CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH----------H
Confidence 3569999999999999997654 2333 368999999999999999876433 11 12221111 1
Q ss_pred HHHHHHHhhhcCccccccCCC-chhHHHHHHhcceEEEEeccCCC-----------hHHHHHHHhccCCCCCCcEEEEEc
Q 000780 261 HLQKQMLSTTLSEKLEVAGPN-IPHFTKERVRRMKLLIVLDDVNE-----------VGQLKRLIGELDQFGQGSRIVVTT 328 (1288)
Q Consensus 261 ~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~l~~k~~LlVLDdv~~-----------~~~~~~l~~~l~~~~~gsrIivTT 328 (1288)
.++ .+.....+-++ +...+.+.-+.+++.+.+|.+.. .+.-.-|.+.+. .|.--.|-.||
T Consensus 236 ~Lv-------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 236 SLV-------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred HHh-------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 111 01111111111 11222233334589999998732 122233334433 23344566677
Q ss_pred CChhHHhhhC-----CccceEEEcCCCCHHHHHHHHhhh
Q 000780 329 RDKRVLEKFR-----GEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 329 R~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
-++- -.... ......+.|...+.+++...++-.
T Consensus 308 ~~EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 4431 11100 014467899999999999998643
No 273
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.57 E-value=0.053 Score=60.16 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=61.2
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE 276 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~ 276 (1288)
++.+..++.. ...+|.|.|..|.||||+++++...+...-..++.+.+-.+..-. +. .+.... .
T Consensus 69 ~~~l~~~~~~----~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~--~~--------~q~~v~--~ 132 (264)
T cd01129 69 LEIFRKLLEK----PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP--GI--------NQVQVN--E 132 (264)
T ss_pred HHHHHHHHhc----CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC--Cc--------eEEEeC--C
Confidence 4445455532 346899999999999999999987764422334455433221110 10 010000 0
Q ss_pred ccCCCchhHHHHHHhcceEEEEeccCCChHHHHHHHhc
Q 000780 277 VAGPNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGE 314 (1288)
Q Consensus 277 ~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~ 314 (1288)
..+....+.++..++..+=.|+++++.+.+....++..
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 11122347788888888999999999999876655444
No 274
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.54 E-value=0.021 Score=58.65 Aligned_cols=79 Identities=8% Similarity=0.092 Sum_probs=43.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccC----CCchhHHHHH
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAG----PNIPHFTKER 289 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~----~~~~~~l~~~ 289 (1288)
++.|.|.+|.||||+|..+..+... ...|+... . ..-.+.++++............. .++.+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~-----~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA-----Q-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC-----C-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 5889999999999999999876432 24455421 1 22234555554443322222211 1233444332
Q ss_pred HhcceEEEEeccC
Q 000780 290 VRRMKLLIVLDDV 302 (1288)
Q Consensus 290 l~~k~~LlVLDdv 302 (1288)
.. +.-++++|.+
T Consensus 74 ~~-~~~~VlID~L 85 (170)
T PRK05800 74 AA-PGRCVLVDCL 85 (170)
T ss_pred cC-CCCEEEehhH
Confidence 22 2337888986
No 275
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.066 Score=66.05 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=106.2
Q ss_pred CCCCCcccchhhHHHHHHhh---ccCC------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccccc
Q 000780 185 DSSNGLVGLNSRIEQIKPFL---CMDS------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET 255 (1288)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L---~~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~ 255 (1288)
....++.|.|+..++|.+.. .... ..-++=|.++|++|.|||-||++++-...-- |+.. +..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~sv----SGS 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSV----SGS 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eeee----chH
Confidence 45678899988776666554 3211 1335668899999999999999999754322 2221 111
Q ss_pred CCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCC-----------------hHHHHHHHhccCCC
Q 000780 256 AGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNE-----------------VGQLKRLIGELDQF 318 (1288)
Q Consensus 256 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~-----------------~~~~~~l~~~l~~~ 318 (1288)
++....... ....+.+.+...-...+..|.+|+++. ...+..++...+.+
T Consensus 379 ---------EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ---------EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ---------HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 111111000 000011222222234467777776632 12277888888877
Q ss_pred CCCcEEE--EEcCChhHHhh-h--CCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchh
Q 000780 319 GQGSRIV--VTTRDKRVLEK-F--RGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 390 (1288)
Q Consensus 319 ~~gsrIi--vTTR~~~v~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 390 (1288)
..++.|| -+|...+++.. . .+.-++.+.++.-+..+..++|..|+-..... .+..++++ ++...-|.+-|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 6555343 34544444322 1 11256778899999999999999988554433 34455666 88888888754
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.51 E-value=0.077 Score=53.06 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=56.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCC-chhHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-IPHFTKER 289 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 289 (1288)
.-.+++|.|..|.|||||++.+..... ...+.+++.......-. .. .++.+ ..-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~-~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYF-EQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEE-cc------------------CCHHHHHHHHHHHH
Confidence 447899999999999999999987543 23455555321111100 00 00000 01223445
Q ss_pred HhcceEEEEeccCC---ChH---HHHHHHhccCCCCCCcEEEEEcCChhHHhhh
Q 000780 290 VRRMKLLIVLDDVN---EVG---QLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 290 l~~k~~LlVLDdv~---~~~---~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~ 337 (1288)
+..++-++++|+.. |.. .+..++..+ +..||++|.+.......
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~ 133 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV 133 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh
Confidence 55667789999763 222 233333332 24688888887766544
No 277
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.50 E-value=0.13 Score=65.79 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
...++|....++.+.+.+..-. ..-..|.|+|..|+|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4579999999998877776443 334567899999999999999998754
No 278
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.48 E-value=0.013 Score=58.32 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=33.3
Q ss_pred ccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 191 VGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
||....++++.+.+..-. .....|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577778888877776543 345667899999999999999988753
No 279
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.48 E-value=0.037 Score=59.45 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..-+++.|+|.+|.|||++|.+++.....+-..++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45689999999999999999999987766667888886
No 280
>PRK07667 uridine kinase; Provisional
Probab=95.48 E-value=0.025 Score=59.82 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=32.1
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
.+.+.+.+.... ....+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555555444 456899999999999999999999877543
No 281
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.48 E-value=0.16 Score=55.79 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=93.6
Q ss_pred CCCCcccchhhHHHHHHhhccCC-CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeeccccccc-CCChHHHH
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDS-SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET-AGGLEHLQ 263 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~-~~~l~~l~ 263 (1288)
+...++|-.++.+++..++.... -++..-|.|+|+.|.|||+|......+ ...|.-...+....+.-.. .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 45679999999999988886421 034456789999999999998876665 3444444454433332221 01233444
Q ss_pred HHHHhhhcCcccc-ccCCCchhHHHHHHhc------ceEEEEeccCCChH----H--HHHHHhcc-CCCCCCcEEEEEcC
Q 000780 264 KQMLSTTLSEKLE-VAGPNIPHFTKERVRR------MKLLIVLDDVNEVG----Q--LKRLIGEL-DQFGQGSRIVVTTR 329 (1288)
Q Consensus 264 ~~ll~~l~~~~~~-~~~~~~~~~l~~~l~~------k~~LlVLDdv~~~~----~--~~~l~~~l-~~~~~gsrIivTTR 329 (1288)
+++..++...... ..-.+....+...|+. -++.+|+|.++-.. | +-.+...- ....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 4544443222111 1112222444444443 26999998875432 2 23332221 12356777889999
Q ss_pred ChhH-------HhhhCCccceEEEcCCCCHHHHHHHHhhh
Q 000780 330 DKRV-------LEKFRGEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 330 ~~~v-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
-.-. -..+. ...++-.+.++-++-.++++..
T Consensus 181 ld~lE~LEKRVKSRFs--hr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFS--HRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcc--cceeeccCCCChHHHHHHHHHH
Confidence 6422 11121 2224555556656655555543
No 282
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.47 E-value=0.058 Score=62.59 Aligned_cols=111 Identities=13% Similarity=0.191 Sum_probs=65.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee-ecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS-DVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~-~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
...|.|.|+.|.||||+++.+...+.......++.. +- .+.......................+.++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp---------~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP---------IEYVHRNKRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC---------hhhhccCccceEEccccCCCCcCHHHHHHHhh
Confidence 468999999999999999999887765554554432 11 11110000000111111111223446788888
Q ss_pred hcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHH
Q 000780 291 RRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVL 334 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~ 334 (1288)
+..+=.|++|.+.+.+.....+... ..|..++.|.......
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 8899999999999888766544432 3455566665544443
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.44 E-value=0.063 Score=58.82 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=35.9
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
+..|.++|..+- ..-.++.|+|.+|.|||++|.++......+=..++|+.
T Consensus 11 i~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344555664433 56789999999999999999999765434445677775
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.40 E-value=0.19 Score=59.68 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh--cccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS--HEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~ 247 (1288)
.+++.++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999987665 3334455554
No 285
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.38 E-value=0.06 Score=61.98 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
..++|.+..++++.+.+..-. ....-|.|+|-.|.||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 469999999999988876654 33456779999999999999998853
No 286
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.27 E-value=0.072 Score=57.65 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
+..|..+|..+- ..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345556664332 45689999999999999999999987765555677775
No 287
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.09 Score=60.92 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=83.2
Q ss_pred CCCcccchhhHH---HHHHhhccCC------CCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCC
Q 000780 187 SNGLVGLNSRIE---QIKPFLCMDS------SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAG 257 (1288)
Q Consensus 187 ~~~~vGr~~~~~---~l~~~L~~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~ 257 (1288)
..+.-|.|+..+ ++.+.|.... +.=.+=|.++|++|.|||-||++++-...-- +|...-.+ .+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSE-FdE-- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSE-FDE-- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccc-hhh--
Confidence 355677776554 4555554321 1235668899999999999999998653322 23321111 110
Q ss_pred ChHHHHHHHHhhhcCccccccCC-CchhHHHHHHhcceEEEEeccCCCh-------------HHHHHHHhccCCCCCCcE
Q 000780 258 GLEHLQKQMLSTTLSEKLEVAGP-NIPHFTKERVRRMKLLIVLDDVNEV-------------GQLKRLIGELDQFGQGSR 323 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~~gsr 323 (1288)
++-. -+. .+.+.+...-.+-++.|.+|.++.. +.+..++..++.|.+..-
T Consensus 376 --------m~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 376 --------MFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred --------hhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 0000 001 0112222223445799999987432 126778888887765444
Q ss_pred EEE--EcCCh-hHHhhhC--CccceEEEcCCCCHHHHHHHHhhhhc
Q 000780 324 IVV--TTRDK-RVLEKFR--GEEKKIYRVNGLEFEEAFEHFCNFAF 364 (1288)
Q Consensus 324 Iiv--TTR~~-~v~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af 364 (1288)
||| .|--+ .+-..+. +.-+..+.|+.-+-.-..++|..+.-
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 443 33333 3222221 12345566777776666777776653
No 288
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.19 E-value=0.074 Score=53.72 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=36.7
Q ss_pred hHHHHHHhcceEEEEec----cCCChHHHHH--HHhccCCCCCCcEEEEEcCChhHHhhhC
Q 000780 284 HFTKERVRRMKLLIVLD----DVNEVGQLKR--LIGELDQFGQGSRIVVTTRDKRVLEKFR 338 (1288)
Q Consensus 284 ~~l~~~l~~k~~LlVLD----dv~~~~~~~~--l~~~l~~~~~gsrIivTTR~~~v~~~~~ 338 (1288)
-.+.+.+-+++-+++-| |++..-.|+- ++..+. ..|..||++|.+.++...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34566667888899999 4555444433 333332 46899999999999988874
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.26 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 290
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.19 E-value=0.01 Score=62.92 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=53.8
Q ss_pred ccCcccEEEcccCcCccccccccccccccceeeecCc--cCCCCcchhhhhccccceeecccccCcccCc--ccCCCCCC
Q 000780 718 CLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC--LNLEHFPEILEKMEHLKRIYSDRTPITELPS--SFENLPGL 793 (1288)
Q Consensus 718 ~l~~L~~L~Ls~~~~l~~lp~~l~~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~--~l~~l~~L 793 (1288)
.+..|+.|++.++.++.. - .+-.|++|+.|.++.| .....++.....+++|++|++++|++..+.. .+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-T-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-c-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 345666667766654332 1 2446788888888888 5566666666677888888888888774221 13445556
Q ss_pred cEEEeccCCCC
Q 000780 794 EVLFVEDCSKL 804 (1288)
Q Consensus 794 ~~L~L~~~~~~ 804 (1288)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 66666666543
No 291
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.17 E-value=0.092 Score=54.86 Aligned_cols=122 Identities=21% Similarity=0.334 Sum_probs=64.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH------HHHHhhhcCccc------ccc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ------KQMLSTTLSEKL------EVA 278 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~------~~ll~~l~~~~~------~~~ 278 (1288)
.-.+++|.|..|.|||||++.++.... ...+.+++.... ... ....... .+++..++.... ..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 456899999999999999999987543 345566654211 110 1111111 113333222111 011
Q ss_pred CCCc-hhHHHHHHhcceEEEEeccCC---ChH---HHHHHHhccCCCCCCcEEEEEcCChhHHhhh
Q 000780 279 GPNI-PHFTKERVRRMKLLIVLDDVN---EVG---QLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 279 ~~~~-~~~l~~~l~~k~~LlVLDdv~---~~~---~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~ 337 (1288)
+.+. .-.+.+.+-..+-++++|+.. |.. .+..++..+.. ..|..||++|.+.......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 1111 123445566778899999763 222 23333333221 1266788888887765444
No 292
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.14 E-value=0.07 Score=58.13 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhccc------ceeEEee
Q 000780 198 EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVS 247 (1288)
Q Consensus 198 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~ 247 (1288)
..|.++|..+- ..-.++.|+|.+|.|||+||..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34555554332 5568999999999999999999987655444 5677776
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.14 E-value=0.098 Score=54.13 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=60.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeec--ccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDV--RGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 288 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~--~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 288 (1288)
.-.+++|.|..|.|||||++.++.-... ..+.+++... .-..+. ..+. .+....-.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~-~~LS-----------------gGq~qrv~lar 84 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQY-IDLS-----------------GGELQRVAIAA 84 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEccc-CCCC-----------------HHHHHHHHHHH
Confidence 3468999999999999999998864432 2344444321 000111 0000 00001123445
Q ss_pred HHhcceEEEEeccCC---ChHH---HHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcC
Q 000780 289 RVRRMKLLIVLDDVN---EVGQ---LKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN 348 (1288)
Q Consensus 289 ~l~~k~~LlVLDdv~---~~~~---~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~ 348 (1288)
.+..++-++++|.-. |... +..++..+.. ..+..||++|.+....... .++++.+.
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~---~d~i~~l~ 146 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL---SDRIHVFE 146 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh---CCEEEEEc
Confidence 556677899999752 2222 2233322221 1235688888887766554 23455444
No 294
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.099 Score=56.46 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=36.3
Q ss_pred HHHHHHhcceEEEEecc----CC--ChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhh
Q 000780 285 FTKERVRRMKLLIVLDD----VN--EVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 285 ~l~~~l~~k~~LlVLDd----v~--~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~ 337 (1288)
.+.+.|..++=|+|||. |+ ....+-.++..+.. .|..|+++|.|-+....+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh
Confidence 45677888899999994 33 33446666666553 388999999998776665
No 295
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.10 E-value=0.27 Score=61.10 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=40.8
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
....++|.+..++++.+.+..-. .....|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999988876544 334567799999999999999999854
No 296
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.4 Score=54.92 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
...++++++|+.|+||||++..++.....+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999999999999886654433455554
No 297
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.22 Score=57.42 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=81.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 292 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~ 292 (1288)
|=-.++|++|.|||++..++++.+ +.-+|.-.+.++... . + ++.++... .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n-~---d-Lr~LL~~t---------------------~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLD-S---D-LRHLLLAT---------------------P 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCc-H---H-HHHHHHhC---------------------C
Confidence 456799999999999999999865 334554444333333 1 1 22222211 1
Q ss_pred ceEEEEeccCCChH--------------------HHHHHHhccC--CCCC-CcEEE-EEcCChhHHhh---hCCccceEE
Q 000780 293 MKLLIVLDDVNEVG--------------------QLKRLIGELD--QFGQ-GSRIV-VTTRDKRVLEK---FRGEEKKIY 345 (1288)
Q Consensus 293 k~~LlVLDdv~~~~--------------------~~~~l~~~l~--~~~~-gsrIi-vTTR~~~v~~~---~~~~~~~~~ 345 (1288)
.|-.||+.|++-.- .+.-|+..++ |... +-||| .||-..+-+.. ..+..+-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 24455666553220 0222333332 2222 34665 56655533221 111255567
Q ss_pred EcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHHhhhc
Q 000780 346 RVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 398 (1288)
Q Consensus 346 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 398 (1288)
.+..=+.+.-..||..+..... + ..++.+|.+...|.-+.=..++..|
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 8888888988999988874432 2 2345556655556544444455444
No 298
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.08 E-value=0.2 Score=61.69 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
....++|....++++.+.+..-. ..-..|.|+|..|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 35679999999999988887654 4456778999999999999999998543
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.19 Score=58.06 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=28.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhccc--ceeEEee
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVS 247 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~ 247 (1288)
...+++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998765443 3444443
No 300
>PRK06762 hypothetical protein; Provisional
Probab=95.07 E-value=0.063 Score=55.24 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
..+|.|.|++|.||||+|+++..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 301
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.07 E-value=0.017 Score=55.00 Aligned_cols=31 Identities=42% Similarity=0.557 Sum_probs=21.5
Q ss_pred EEEEecCCchHHHHHHHHHHHhhcccceeEE
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQFSHEFEGSCF 245 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 245 (1288)
|.|+|.+|+||||+|++++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888765433
No 302
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.06 E-value=0.055 Score=57.26 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=56.6
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE 276 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~ 276 (1288)
.+.+...+.. .-+++.|.|.+|.||||+++.+...+...-..++++. .+......+.+.. +.....
T Consensus 7 ~~a~~~~l~~----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT~~Aa~~L~~~~----~~~a~T 72 (196)
T PF13604_consen 7 REAVRAILTS----GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PTNKAAKELREKT----GIEAQT 72 (196)
T ss_dssp HHHHHHHHHC----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SSHHHHHHHHHHH----TS-EEE
T ss_pred HHHHHHHHhc----CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------CcHHHHHHHHHhh----Ccchhh
Confidence 3444444443 3378889999999999999999886665522333332 2211222333332 111110
Q ss_pred ccCCCchhHHHHHH---------hcceEEEEeccCCChH--HHHHHHhccCCCCCCcEEEEEcCCh
Q 000780 277 VAGPNIPHFTKERV---------RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 277 ~~~~~~~~~l~~~l---------~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsrIivTTR~~ 331 (1288)
+. ..+...- ..++-+||+|++.... ++..++.... ..|+|+|+.--..
T Consensus 73 i~-----~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 73 IH-----SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp HH-----HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred HH-----HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 00 0000000 1233599999986544 5666666544 2578888765433
No 303
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.99 E-value=0.033 Score=55.64 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=29.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..+|-|.|.+|.||||||+++..++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368899999999999999999999988766666664
No 304
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.99 E-value=0.12 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+|.++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 305
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.98 E-value=0.094 Score=59.70 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
...+++++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 56899999999999999999999877654
No 306
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.95 E-value=0.02 Score=55.94 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.93 E-value=0.071 Score=54.83 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.-.+++|.|..|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 308
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.18 Score=59.69 Aligned_cols=131 Identities=21% Similarity=0.310 Sum_probs=78.5
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 291 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~ 291 (1288)
..=|.+||++|.|||-||++|+|.-+-+| +.. .+. .|+.....+ ....+...+.+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV--------KGP-ELlNkYVGE--------SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV--------KGP-ELLNKYVGE--------SERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Eee--------cCH-HHHHHHhhh--------HHHHHHHHHHHhhc
Confidence 44578999999999999999999876665 321 111 222222211 01111133333334
Q ss_pred cceEEEEeccCCCh-------------HHHHHHHhccCCCC--CCcEEEEEcCChhHHh-hh-C-CccceEEEcCCCCHH
Q 000780 292 RMKLLIVLDDVNEV-------------GQLKRLIGELDQFG--QGSRIVVTTRDKRVLE-KF-R-GEEKKIYRVNGLEFE 353 (1288)
Q Consensus 292 ~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~--~gsrIivTTR~~~v~~-~~-~-~~~~~~~~l~~L~~~ 353 (1288)
.-+++|.||.++.. ..+..|+..++... .|--||-.|-.+++.. .+ . +.-+...-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 56899999988531 12567777766442 4555565554443322 21 1 124567888999999
Q ss_pred HHHHHHhhhhc
Q 000780 354 EAFEHFCNFAF 364 (1288)
Q Consensus 354 ea~~Lf~~~af 364 (1288)
|-.++++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999988774
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.085 Score=64.92 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=87.6
Q ss_pred CCcccchhhHHHHHHhhcc---C-------CCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCC
Q 000780 188 NGLVGLNSRIEQIKPFLCM---D-------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAG 257 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~ 257 (1288)
....|.+...+.+.+.... . .-...+.+.++|++|.|||.||+++++.....|-.+..-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 3455566555555444321 1 113456888999999999999999999665554332211
Q ss_pred ChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCCh-------------HHHHHHHhccCCCCCCcE-
Q 000780 258 GLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV-------------GQLKRLIGELDQFGQGSR- 323 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~~gsr- 323 (1288)
.+..+.+.+ ....+...+....+..+..|.+|.++.. .....++..+......+.
T Consensus 311 ---~l~sk~vGe--------sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 ---ELLSKWVGE--------SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred ---HHhccccch--------HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 111111110 0111113344444567899999988431 234455555543333333
Q ss_pred -EEEEcCChhHHh-hhC--CccceEEEcCCCCHHHHHHHHhhhhcC
Q 000780 324 -IVVTTRDKRVLE-KFR--GEEKKIYRVNGLEFEEAFEHFCNFAFK 365 (1288)
Q Consensus 324 -IivTTR~~~v~~-~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~ 365 (1288)
||-||-...... .+- +.-+..+.++.-+.++..+.|..+.-+
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 444444333222 111 124668999999999999999998753
No 310
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.91 E-value=0.0053 Score=75.58 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=7.6
Q ss_pred ccCCCCcEEEcCCCC
Q 000780 835 ALSNMLRSLDSSHCK 849 (1288)
Q Consensus 835 ~~l~~L~~L~L~~~~ 849 (1288)
..++.|+.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344555555555554
No 311
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.092 Score=59.48 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=58.2
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcc--
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK-- 274 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-- 274 (1288)
+.++...|..+- -.-.+|.|-|-+|||||||..+++.++..+- .+.|+.. + ....++.-. ...++...
T Consensus 79 ~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-----E--ES~~QiklR-A~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-----E--ESLQQIKLR-ADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-----C--cCHHHHHHH-HHHhCCCccc
Confidence 456666665432 2346899999999999999999999998776 7888852 1 222222111 11233211
Q ss_pred ccc-cCCCchhHHHHHHhcceEEEEeccCC
Q 000780 275 LEV-AGPNIPHFTKERVRRMKLLIVLDDVN 303 (1288)
Q Consensus 275 ~~~-~~~~~~~~l~~~l~~k~~LlVLDdv~ 303 (1288)
... ...++.+.+...-+.++-++|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 111 22223344444445678899999874
No 312
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.89 E-value=0.2 Score=52.60 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=42.2
Q ss_pred CCCCcccchhhHHHHHHhhcc-CCCCCceEEEEEecCCchHHHHHHHHHHHhhcccce
Q 000780 186 SSNGLVGLNSRIEQIKPFLCM-DSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG 242 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~ 242 (1288)
.-..++|.|...+.+.+-... -.+...--|.+||.-|.|||.|++++.+.+..+.-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 335789999988887653221 111334567899999999999999999998887655
No 313
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.0054 Score=64.90 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=50.2
Q ss_pred cccceeecccccCcccCcccCCCCCCcEEEeccCCCCCCCCCcCCCCchHHHHhhcccCCccCCc--ccccCCCCcEEEc
Q 000780 768 EHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS--SVALSNMLRSLDS 845 (1288)
Q Consensus 768 ~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~L 845 (1288)
.+.+.|+..|+.+..|.- ...++.|+.|.|+-|++...- .+..+++|++|+|..|.|..+.. -+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344455555555554321 335666666666666654432 25677888888888888876644 2456777777777
Q ss_pred CCCCCCC
Q 000780 846 SHCKGLE 852 (1288)
Q Consensus 846 ~~~~~~~ 852 (1288)
..|+-.+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 7766433
No 314
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.84 E-value=0.45 Score=54.76 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=35.4
Q ss_pred cccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 190 LVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
+||....++++.+.+..-. ..-.-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4788888888877776544 33455789999999999999999874
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.82 E-value=0.024 Score=60.04 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=23.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+|||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 316
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.82 E-value=0.2 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 45678999999999999999875
No 317
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.80 E-value=0.099 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.78 E-value=0.061 Score=55.11 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=61.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCc-hhHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNI-PHFTKER 289 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~ 289 (1288)
.-.+++|.|..|.|||||.+.++.... ...+.+++.... ... .......++-..... +.++.+. .-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~--~~~~~~~~~~i~~~~----qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF--ASPRDARRAGIAMVY----QLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc--CCHHHHHhcCeEEEE----ecCHHHHHHHHHHHH
Confidence 346899999999999999999986543 345566664221 110 111111111000000 0111111 1234455
Q ss_pred HhcceEEEEeccCC---ChH---HHHHHHhccCCCCCCcEEEEEcCChhHHhhh
Q 000780 290 VRRMKLLIVLDDVN---EVG---QLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 290 l~~k~~LlVLDdv~---~~~---~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~ 337 (1288)
+-.++-++++|+.. |.. .+..++..+. ..|..||++|.+...+...
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 56677888999763 222 2333333322 2466788999887755543
No 319
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.77 E-value=0.069 Score=53.98 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=18.6
Q ss_pred EEecCCchHHHHHHHHHHHh
Q 000780 217 IWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 217 I~G~gGiGKTtLA~~~~~~~ 236 (1288)
|.|++|.||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 320
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.0026 Score=67.15 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=67.7
Q ss_pred CCCcEEEcCCCCCCCccccccccCCCCCcEEEecCCCCCCCchhhcCCCCCcEEEccCCCCccCc--hhhhcCCCCCEEE
Q 000780 838 NMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIH 915 (1288)
Q Consensus 838 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~ 915 (1288)
.+.+.|++.+|.+.. ......++.|+.|.|+-|.++.+.. +..++.|++|+|..|.|.++. ..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 345556666665332 1234567888888888888887643 677889999999999988776 4678899999999
Q ss_pred ecCCCCCCccCC--------cCccccEEE
Q 000780 916 LEDFNMLQSLPE--------LPLCLKYLH 936 (1288)
Q Consensus 916 L~~~~~l~~lp~--------~~~~L~~L~ 936 (1288)
|..|+-.+.-+. .+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 999887765552 345666664
No 321
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.70 E-value=0.03 Score=66.73 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=41.4
Q ss_pred CCCcccchhhHHHHHHhhcc----CCCCCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 187 SNGLVGLNSRIEQIKPFLCM----DSSDTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..+++|.+..++++.+.|.. .. ..-+++.++|++|+||||||+.+++-+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 45799999999999998822 22 4568999999999999999999998553
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.70 E-value=0.094 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
.-.+++|+|+.|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446899999999999999998853
No 323
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.69 E-value=0.092 Score=52.79 Aligned_cols=117 Identities=18% Similarity=0.144 Sum_probs=61.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhc----CccccccCCC-------
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTL----SEKLEVAGPN------- 281 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~----~~~~~~~~~~------- 281 (1288)
.+|-|++-.|.||||+|...+-+...+=-.+.++.-+.... . .+-....+.+ ..+. .........+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46778888899999999999987766644555544332211 1 2333344433 1100 0000000000
Q ss_pred ---chhHHHHHHhc-ceEEEEeccCCCh-----HHHHHHHhccCCCCCCcEEEEEcCChh
Q 000780 282 ---IPHFTKERVRR-MKLLIVLDDVNEV-----GQLKRLIGELDQFGQGSRIVVTTRDKR 332 (1288)
Q Consensus 282 ---~~~~l~~~l~~-k~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gsrIivTTR~~~ 332 (1288)
..+..++.+.. +-=|+|||++-.. -..+.+...+....++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 01222333333 4569999998433 113333333333456778999999863
No 324
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.035 Score=58.24 Aligned_cols=30 Identities=47% Similarity=0.648 Sum_probs=27.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+.+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999998866
No 325
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.059 Score=56.18 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=27.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.-.+++|.|..|.|||||++.++.... ...+.+++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 60 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILID 60 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 346899999999999999999986432 235555553
No 326
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.63 E-value=0.012 Score=62.48 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=15.2
Q ss_pred CCCCcEEEecCCCCCCCc----hhhcCCCCCcEEEccCC
Q 000780 862 LSAMGLLHISDYAVREIP----QEIAYLSSLEILYLSGN 896 (1288)
Q Consensus 862 ~~~L~~L~L~~~~l~~lp----~~l~~l~~L~~L~Ls~n 896 (1288)
+.+|..|++.+|..+.+- ..+..+++|++|+-...
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 334444444444443321 12334556665554433
No 327
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.63 E-value=0.14 Score=61.47 Aligned_cols=52 Identities=25% Similarity=0.209 Sum_probs=38.2
Q ss_pred hhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 195 SRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.-+.++...|..+- ..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 78 TGi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33556667665433 45678999999999999999999886655434567775
No 328
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.21 Score=54.37 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=26.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
-...++|||++|.|||-+|++|+.++.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 457899999999999999999999876665
No 329
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.55 E-value=0.05 Score=55.97 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=27.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh-cccceeEEe
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS-HEFEGSCFV 246 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~ 246 (1288)
..++.+.|+.|+|||.||++++..+. +.....+-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 46788999999999999999999877 454444444
No 330
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.052 Score=55.25 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=24.4
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccce
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEG 242 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~ 242 (1288)
+.|.+.|.+|+||||+|++++..++.+-..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 467889999999999999999876655333
No 331
>PTZ00494 tuzin-like protein; Provisional
Probab=94.53 E-value=2.5 Score=48.76 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhccccc----cccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc
Q 000780 166 VNKIVEDVLKKLEKIT----VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE 241 (1288)
Q Consensus 166 i~~i~~~v~~~l~~~~----~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~ 241 (1288)
.+--++...+..++.. ..+.....+|.|+.+-..+.+.|........|++.+.|.-|.||++|.+....+- --
T Consensus 345 l~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~ 421 (664)
T PTZ00494 345 LRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GV 421 (664)
T ss_pred HHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CC
Confidence 3344455555544321 2344567899999999888888877655789999999999999999999876542 23
Q ss_pred eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHH-------HHhcceEEEEec--cCCChHHHHHHH
Q 000780 242 GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE-------RVRRMKLLIVLD--DVNEVGQLKRLI 312 (1288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-------~l~~k~~LlVLD--dv~~~~~~~~l~ 312 (1288)
..+|++ ++.. ++-++.+.+.++....+.-++- .+.+.+ ...++.-+||+- +=.+..-.-.-.
T Consensus 422 paV~VD-VRg~-------EDtLrsVVKALgV~nve~CGDl-LdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~ 492 (664)
T PTZ00494 422 ALVHVD-VGGT-------EDTLRSVVRALGVSNVEVCGDL-LGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV 492 (664)
T ss_pred CeEEEE-ecCC-------cchHHHHHHHhCCCChhhhccH-HHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH
Confidence 456664 4332 2334555556666655543331 122222 233455566653 222222111111
Q ss_pred hccCCCCCCcEEEEEcCChhHHhh-hCCccceEEEcCCCCHHHHHHHHhhh
Q 000780 313 GELDQFGQGSRIVVTTRDKRVLEK-FRGEEKKIYRVNGLEFEEAFEHFCNF 362 (1288)
Q Consensus 313 ~~l~~~~~gsrIivTTR~~~v~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~ 362 (1288)
-.+...-.-+.|++----+.+... .....-+.|-++.++.++|.++-...
T Consensus 493 vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 493 VSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred HHHHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 122222345677764433322211 11124568999999999999887654
No 332
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.51 E-value=0.38 Score=54.22 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=36.0
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE 241 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~ 241 (1288)
..+.++=.......+...+.. .+.|.|.|.+|+||||+|+.++.++...|-
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~-----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAY-----DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 334444444455556666643 245889999999999999999998876654
No 333
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.1 Score=53.20 Aligned_cols=122 Identities=21% Similarity=0.298 Sum_probs=65.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCC-chhHHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-IPHFTKERV 290 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~l 290 (1288)
-.+++|.|..|.|||||++.++..+. ...+.+++.... ... .........+. -+.+ .++.+ ..-.+.+.+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~--~~~~~~~~~i~-~~~q----lS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK--LPLEELRRRIG-YVPQ----LSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc--CCHHHHHhceE-EEee----CCHHHHHHHHHHHHH
Confidence 47899999999999999999987553 345666664221 110 01111111110 0000 11111 112344555
Q ss_pred hcceEEEEeccCC---ChH---HHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEc
Q 000780 291 RRMKLLIVLDDVN---EVG---QLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRV 347 (1288)
Q Consensus 291 ~~k~~LlVLDdv~---~~~---~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l 347 (1288)
...+-++++|+.. |.. .+..++.... ..+..+|++|.+....... .++++.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~---~d~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA---ADRVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh---CCEEEEE
Confidence 5667899999763 222 2333333322 2256788998888776664 2445544
No 334
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.11 Score=55.04 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
.-.++||+|.+|.||||||+.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999984
No 335
>PTZ00301 uridine kinase; Provisional
Probab=94.45 E-value=0.034 Score=59.23 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=25.1
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
..+|||.|.+|.||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 47899999999999999999998775443
No 336
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.44 E-value=0.052 Score=58.88 Aligned_cols=54 Identities=13% Similarity=0.337 Sum_probs=34.3
Q ss_pred hHHHHHHhcceEEEEecc------CCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhC
Q 000780 284 HFTKERVRRMKLLIVLDD------VNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR 338 (1288)
Q Consensus 284 ~~l~~~l~~k~~LlVLDd------v~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~ 338 (1288)
-.+.+.|..+.=+++||. +.+.-.+-.++..+.. ..|-.||+++.|-..+..+.
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhC
Confidence 345666777878889995 3333333333333321 35677999999998887763
No 337
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.43 E-value=0.19 Score=55.91 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIF 233 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~ 233 (1288)
+++..|.+.|.+|.|||.||.+..
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHH
Confidence 679999999999999999887654
No 338
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.41 E-value=0.18 Score=60.54 Aligned_cols=50 Identities=26% Similarity=0.218 Sum_probs=37.3
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
+.++...|..+- ..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456666665433 44579999999999999999999987764445667775
No 339
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.38 E-value=0.24 Score=59.10 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
..++|+|+|.+|+||||++.+++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999998866544
No 340
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.35 E-value=0.63 Score=49.94 Aligned_cols=211 Identities=15% Similarity=0.230 Sum_probs=111.2
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc------ccceeEEeeeccc------cc-
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH------EFEGSCFVSDVRG------NS- 253 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~~~~~------~~- 253 (1288)
-+.+.++++.-.++.+.... .+..-..++|+.|.||-|.+..+.+++-+ +-+..-|...... .+
T Consensus 12 l~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34577777777777766652 45677889999999999999988876532 2334444432211 00
Q ss_pred ---------ccCCChHHHHHHHHhhhcCcc-ccccCCCchhHHHHHHhcceE-EEEeccCCCh--HHHHHHHhccCCCCC
Q 000780 254 ---------ETAGGLEHLQKQMLSTTLSEK-LEVAGPNIPHFTKERVRRMKL-LIVLDDVNEV--GQLKRLIGELDQFGQ 320 (1288)
Q Consensus 254 ---------~~~~~l~~l~~~ll~~l~~~~-~~~~~~~~~~~l~~~l~~k~~-LlVLDdv~~~--~~~~~l~~~l~~~~~ 320 (1288)
+....-..+.++++.+..+.. .+.. ..+.+ ++|+-.++.. +.-.+|.........
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhc------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 000011123333333322111 0000 01122 4455544432 112233333333345
Q ss_pred CcEEEEEcCCh-hHHhhhCCccceEEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCc-hhHHHHhh--
Q 000780 321 GSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP-LVLEVLGS-- 396 (1288)
Q Consensus 321 gsrIivTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~-- 396 (1288)
.+|+|+..-+. .+.....+ ..-.+.++..+++|-...++..+-+.+..-+ .+++.+|+++++|+- -||-.+-.
T Consensus 157 ~~RlIl~cns~SriIepIrS-RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRS-RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred CceEEEEecCcccchhHHhh-heeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 67777653322 11111111 3457899999999999999887754443322 678999999999973 22222111
Q ss_pred ---hc--CC---CCHHHHHHHhhhhhh
Q 000780 397 ---SL--CL---KRKSHWGKVLHDLNR 415 (1288)
Q Consensus 397 ---~L--~~---~~~~~w~~~l~~l~~ 415 (1288)
.. .+ -..-+|+-.+.+...
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHHH
Confidence 11 11 135689888776544
No 341
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.34 E-value=0.12 Score=56.73 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=54.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh----cccceeEEeeecccccccCCChHHHHHHHHhhhcC-ccccc----cCC-
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFS----HEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLS-EKLEV----AGP- 280 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~----~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~-~~~~~----~~~- 280 (1288)
.-+.++|.|-.|+|||+|+..+.++.. .+-+.++|+. + -++...+.++.+++...-.. ...-. +..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-I---GeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~ 143 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-M---GITMEDARFFKDDFEETGALERVVLFLNLANDPT 143 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-e---ccccHHHHHHHHHhhhcCCcceEEEEEecCCCCH
Confidence 346789999999999999999887653 2235566654 3 22324556666666554111 11000 110
Q ss_pred -------CchhHHHHHHh---cceEEEEeccCCChHH
Q 000780 281 -------NIPHFTKERVR---RMKLLIVLDDVNEVGQ 307 (1288)
Q Consensus 281 -------~~~~~l~~~l~---~k~~LlVLDdv~~~~~ 307 (1288)
...-.+.++++ ++++|+++||+....+
T Consensus 144 ~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 144 IERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 01123344443 6799999999965443
No 342
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.34 E-value=0.18 Score=53.60 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=38.9
Q ss_pred hHHHHHHhcceEEEEeccC------CChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcC
Q 000780 284 HFTKERVRRMKLLIVLDDV------NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN 348 (1288)
Q Consensus 284 ~~l~~~l~~k~~LlVLDdv------~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~ 348 (1288)
-++.+.+-..+-+|+-|.= .+.+.+-.++..+.. ..|..||+.|.|..++..+ ++++.+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~----dr~i~l~ 216 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA----DRVIELK 216 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC----CEEEEEe
Confidence 3466777788889999953 333344444444321 3477899999999999864 4455543
No 343
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.32 E-value=0.093 Score=63.29 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=45.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
+.-++..++|++|+||||||..++++.... ++=+ |. ++. .....+.+.+...+.....-.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYs---VvEI-NA---SDe-Rt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYS---VVEI-NA---SDE-RTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCce---EEEe-cc---ccc-ccHHHHHHHHHHHHhhccccc------------
Confidence 567899999999999999999999864322 1111 11 222 344444444444332211110
Q ss_pred HhcceEEEEeccCCChH
Q 000780 290 VRRMKLLIVLDDVNEVG 306 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~~ 306 (1288)
-.+++.-+|+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 02467889999987644
No 344
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.31 E-value=0.1 Score=57.78 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=34.5
Q ss_pred HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEE
Q 000780 198 EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCF 245 (1288)
Q Consensus 198 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 245 (1288)
++.++++.. .++.+|.|.|.+|.|||||+..+.+.+.......+.
T Consensus 93 ~~~r~~~~~---~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 93 ERNRARFAA---RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHHHHh---cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 344455543 568999999999999999999999988776544444
No 345
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.31 E-value=0.29 Score=50.73 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
++.+.|++|.||||+++.++..+...-..++++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 678999999999999999998776552233344
No 346
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.26 E-value=0.036 Score=47.40 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 347
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.20 E-value=0.13 Score=56.88 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=67.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccc-----cCCCchh
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEV-----AGPNIPH 284 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~-----~~~~~~~ 284 (1288)
.+...++|+|..|.|||||.+.++..+... .+.+++... ..... ....++...+ ..+.+..... +...-..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~-d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV-DERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc-hhHHHHHHHh-cccccccccccccccccchHHH
Confidence 345789999999999999999999866543 344444311 11100 1112222111 1111111110 1110011
Q ss_pred HHHHHHh-cceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhh
Q 000780 285 FTKERVR-RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 336 (1288)
Q Consensus 285 ~l~~~l~-~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~ 336 (1288)
.+...++ ..+=++|+|.+...+.+..+...+. .|..||+||.+..+...
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 2222333 5678999999988887777776653 47789999997766443
No 348
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.14 Score=53.10 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=61.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc-----------ccC
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE-----------VAG 279 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-----------~~~ 279 (1288)
.-.+++|+|..|.|||||++.++.... ...+.+++... .... .. ....+.+ .-..+...- .++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~--~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKK--EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-Eccc--ch-HhhhccE-EEEecCCccccCCcHHHHhhcCH
Confidence 346899999999999999999986442 23455554321 0000 00 1111100 000010000 011
Q ss_pred CCc-hhHHHHHHhcceEEEEeccCCC------hHHHHHHHhccCCCCCCcEEEEEcCChhHHhhh
Q 000780 280 PNI-PHFTKERVRRMKLLIVLDDVNE------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 280 ~~~-~~~l~~~l~~k~~LlVLDdv~~------~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~ 337 (1288)
.+. .-.+.+.+..++=++++|+... ...+..++..+. ..|..||++|.+.......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh
Confidence 111 1234455667788999997632 222333333332 2367799999988766654
No 349
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.17 E-value=0.5 Score=58.15 Aligned_cols=51 Identities=20% Similarity=0.102 Sum_probs=38.8
Q ss_pred cCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 184 TDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
......++|....++++.+.+..-. ..-..|.|+|-.|.||+++|+++...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A-~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLA-MLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHh-CCCCCEEEECCCCccHHHHHHHHHHh
Confidence 3455689999998888887775433 22345779999999999999997653
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.13 E-value=0.22 Score=57.87 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.9
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
-.++|+|++|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999999863
No 351
>PRK03839 putative kinase; Provisional
Probab=94.13 E-value=0.037 Score=57.85 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
.|.|.|++|.||||+|+.+++++.-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998743
No 352
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.11 E-value=0.031 Score=52.62 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEEecCCchHHHHHHHHHHHhhcc
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
|-|+|.+|+|||++|+.++..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999876544
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.08 E-value=0.045 Score=58.79 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 354
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.06 E-value=0.12 Score=58.40 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
...|..+|..+.=..-+++-|+|++|+||||||.+++.....+-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 345555664122156789999999999999999998887666656677875
No 355
>PRK08233 hypothetical protein; Provisional
Probab=94.05 E-value=0.04 Score=57.70 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 356
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.02 E-value=0.05 Score=61.09 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=69.7
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHh
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLS 268 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 268 (1288)
.+.-.....+++.++|...- ...+.|.|.|..|.||||+++++...+...-...+-+.+..+..-.
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~------------- 170 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP------------- 170 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-------------
T ss_pred hccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-------------
Confidence 34333444455555554321 2358899999999999999999998765552333444432221110
Q ss_pred hhcCcccc--ccCCCchhHHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEE-EEEcCC
Q 000780 269 TTLSEKLE--VAGPNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRI-VVTTRD 330 (1288)
Q Consensus 269 ~l~~~~~~--~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrI-ivTTR~ 330 (1288)
........ .......+.++..|+..+=.+|++.+.+.+....+... ..|..+ +-|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 00000000 12233447788888988899999999998887774433 456677 555443
No 357
>PRK04040 adenylate kinase; Provisional
Probab=94.02 E-value=0.053 Score=56.81 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=23.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhh
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999874
No 358
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.00 E-value=0.15 Score=59.74 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=32.4
Q ss_pred hhhHHHHHHhhc-----cCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 194 NSRIEQIKPFLC-----MDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 194 ~~~~~~l~~~L~-----~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
..-++++..||. ... -+.+++.|.|++|+||||.++.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345677777776 222 456799999999999999999998754
No 359
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.26 Score=57.45 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999988654
No 360
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.34 Score=61.41 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=67.1
Q ss_pred CcccchhhHHHHHHhhccCC---CC--CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHH
Q 000780 189 GLVGLNSRIEQIKPFLCMDS---SD--TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQ 263 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~---~~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~ 263 (1288)
..+|-++.+..|-+.+..-. .+ ....+.+.|+.|+|||-||++++.-+.+..+.-+-++ +...+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~~ 631 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEFQ 631 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhhh
Confidence 46677777777766664321 12 4567789999999999999999998766555544442 22233
Q ss_pred HHHHhhhcCccccccCCCchhHHHHHHhcceE-EEEeccCCChHH
Q 000780 264 KQMLSTTLSEKLEVAGPNIPHFTKERVRRMKL-LIVLDDVNEVGQ 307 (1288)
Q Consensus 264 ~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~-LlVLDdv~~~~~ 307 (1288)
+ .+.+.+......+......+.+.++++++ +|.||||+..+.
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 3 33333333333344444678888888875 555699987654
No 361
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.97 E-value=0.11 Score=58.65 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=37.8
Q ss_pred HHHHHHhhc-cCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 197 IEQIKPFLC-MDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
...|..+|. .+= ..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345556665 222 55689999999999999999999887666666778886
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.95 E-value=0.087 Score=56.95 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.94 E-value=0.048 Score=58.41 Aligned_cols=28 Identities=43% Similarity=0.648 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+...+|+|+|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998654
No 364
>PRK00625 shikimate kinase; Provisional
Probab=93.94 E-value=0.042 Score=56.63 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.|.++||+|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 365
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.94 E-value=0.29 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=21.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 366
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.92 E-value=0.72 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
..++++++|+.|+||||++.+++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 3479999999999999999999986643
No 367
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.11 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999974
No 368
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.15 Score=57.12 Aligned_cols=74 Identities=26% Similarity=0.309 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHhccccccccCCCCCcccchhhHHHHHHhhccC---------CCCCceEEEEEecCCchHHHHHHH
Q 000780 161 HDAQLVNKIVEDVLKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMD---------SSDTVQIVGIWGMGGIGKTTLAKA 231 (1288)
Q Consensus 161 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGiGKTtLA~~ 231 (1288)
+++.+++-+-.+|.++ .+...=+++.|.++..+-|++..... --..-+-|..+|++|.|||-||++
T Consensus 190 ~d~~Lve~lerdIl~~-----np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 190 YDADLVEALERDILQR-----NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred chHHHHHHHHHHHhcc-----CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 3444444444455443 33334467888888877777654321 113456788999999999999999
Q ss_pred HHHHhhcc
Q 000780 232 IFDQFSHE 239 (1288)
Q Consensus 232 ~~~~~~~~ 239 (1288)
|+.....-
T Consensus 265 vATEc~tT 272 (491)
T KOG0738|consen 265 VATECGTT 272 (491)
T ss_pred HHHhhcCe
Confidence 99876533
No 369
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.80 E-value=0.058 Score=57.44 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=49.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhh-hcCcccc-c--cCCC------
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEKLE-V--AGPN------ 281 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~--~~~~------ 281 (1288)
-+.++|.|.+|+|||+|+..+.+..... ..+|+. + .++...+.++.+++... ......- . ....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-i---Ger~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-I---GERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-E---SECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccccc--ceeeee-c---cccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 3678999999999999999999876433 235553 2 22223455666666443 1111000 0 1110
Q ss_pred ---chhHHHHHH--hcceEEEEeccCCCh
Q 000780 282 ---IPHFTKERV--RRMKLLIVLDDVNEV 305 (1288)
Q Consensus 282 ---~~~~l~~~l--~~k~~LlVLDdv~~~ 305 (1288)
..-.+.+++ +++.+|+|+||+...
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 001112222 588999999998443
No 370
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.78 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.++++++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999997663
No 371
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.73 E-value=0.15 Score=54.75 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=34.5
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccc
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSE 254 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~ 254 (1288)
..++.+.+.... .+..+|||.|+||.|||||.-++...+..+ ...+=+-.+...|.
T Consensus 15 ~~~ll~~l~~~~-g~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 15 ARELLKRLYPHT-GRAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSP 70 (266)
T ss_dssp HHHHHHHHGGGT-T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGG
T ss_pred HHHHHHHHHhhc-CCceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCC
Confidence 334444444433 567899999999999999999999877654 23333334444443
No 372
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.72 E-value=0.34 Score=54.39 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=29.6
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcc-cceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 247 (1288)
....++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 345688899999999999999998876544 45566765
No 373
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.69 E-value=0.043 Score=33.51 Aligned_cols=20 Identities=65% Similarity=0.994 Sum_probs=18.2
Q ss_pred CceEEecCCCccccCCCCCc
Q 000780 623 NLVELNLRCSKVEQPWEGEK 642 (1288)
Q Consensus 623 ~L~~L~L~~n~i~~lw~~~~ 642 (1288)
+|+.|+|++++++.+|+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999864
No 374
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.68 E-value=0.11 Score=57.65 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+.|.|+|.+|.||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 468899999999999999999876653
No 375
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.65 E-value=0.22 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
.-.+++|.|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 376
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.62 E-value=0.23 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.661 Sum_probs=22.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.-.+++|+|..|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 377
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.61 E-value=0.33 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+..|+|+||+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987653
No 378
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.59 E-value=0.059 Score=63.10 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
...+|.+.|.+|+||||+|.+++.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999875
No 379
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.075 Score=55.84 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=27.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSD 248 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 248 (1288)
+..+-|.++|++|.|||-+|++|+|+- ..||+..
T Consensus 209 dppkgvllygppgtgktl~aravanrt-----dacfirv 242 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRV 242 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc-----CceEEee
Confidence 345668899999999999999999974 3456653
No 380
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.89 Score=47.98 Aligned_cols=165 Identities=17% Similarity=0.208 Sum_probs=83.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCch-hHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP-HFTKER 289 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~ 289 (1288)
..+-|..+|++|.|||-+|++.+.+-...|-.- .+. ++.+.+. + ++..+. +.+.-.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL-------------AgP-QLVQMfI---G------dGAkLVRDAFaLA 260 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKL-------------AGP-QLVQMFI---G------DGAKLVRDAFALA 260 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhccchHHHh-------------cch-HHHhhhh---c------chHHHHHHHHHHh
Confidence 345678999999999999999887644333110 000 1111111 0 111111 111111
Q ss_pred HhcceEEEEeccCCCh-------------H-H--HHHHHhccCCCCCC--cEEEEEcCChhHHhh--h-CCccceEEEcC
Q 000780 290 VRRMKLLIVLDDVNEV-------------G-Q--LKRLIGELDQFGQG--SRIVVTTRDKRVLEK--F-RGEEKKIYRVN 348 (1288)
Q Consensus 290 l~~k~~LlVLDdv~~~-------------~-~--~~~l~~~l~~~~~g--srIivTTR~~~v~~~--~-~~~~~~~~~l~ 348 (1288)
-...+..|.+|.++.. + | .-.++..++.|.+. -+||..|..-+++.. + .+.-++.++.+
T Consensus 261 KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP 340 (424)
T KOG0652|consen 261 KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFP 340 (424)
T ss_pred hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCC
Confidence 1234678888876321 1 1 34566667666654 455655543333221 1 11245667887
Q ss_pred CCCHHHHHHHHhhhhcC-CCCCCchHHHHHHHHHhhhcCCchhHHHHhhhc
Q 000780 349 GLEFEEAFEHFCNFAFK-ENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 398 (1288)
Q Consensus 349 ~L~~~ea~~Lf~~~af~-~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 398 (1288)
.-+++...+++.-|.-+ ...+.-+++++++.--..-|.--.|+.+=|+.+
T Consensus 341 ~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi 391 (424)
T KOG0652|consen 341 HPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI 391 (424)
T ss_pred CCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHH
Confidence 77777666777666543 234456777766543333222233444444443
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.56 E-value=0.24 Score=51.39 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=60.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc---------ccCCC
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE---------VAGPN 281 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~~~~ 281 (1288)
.-.+++|.|..|.|||||.+.++.... ...+.+++... .... .......+.+. -..++..- .++.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~--~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DISQ--WDPNELGDHVG-YLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Eccc--CCHHHHHhheE-EECCCCccccCcHHHHCcCHHH
Confidence 346899999999999999999987543 23455555321 1100 11111111110 01111000 01111
Q ss_pred -chhHHHHHHhcceEEEEeccCCC------hHHHHHHHhccCCCCCCcEEEEEcCChhHHh
Q 000780 282 -IPHFTKERVRRMKLLIVLDDVNE------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLE 335 (1288)
Q Consensus 282 -~~~~l~~~l~~k~~LlVLDdv~~------~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~ 335 (1288)
..-.+.+.+-.++=++++|+... ...+..++..+. ..|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 11223445556677899997632 222333333332 24667888888887664
No 382
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.55 E-value=0.15 Score=59.01 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=57.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 289 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 289 (1288)
...+=+-|||..|.|||.|.-.+|+.+..+-..++-+. .-+.++.+.+-..- . ..+....+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~-~------~~~~l~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLR-G------QDDPLPQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHh-C------CCccHHHHHHH
Confidence 35677899999999999999999986543211111110 11222333332211 1 11122445566
Q ss_pred HhcceEEEEeccC-----CChHHHHHHHhccCCCCCCcEEEEEcCCh
Q 000780 290 VRRMKLLIVLDDV-----NEVGQLKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 290 l~~k~~LlVLDdv-----~~~~~~~~l~~~l~~~~~gsrIivTTR~~ 331 (1288)
+.++..||.||.+ -+...+..|...+. ..|. |+|+|.|.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 6777779999964 34444666666553 3455 55666554
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.55 E-value=0.1 Score=54.84 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=53.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcc--c-cccCCCchhHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK--L-EVAGPNIPHFTKE 288 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~--~-~~~~~~~~~~l~~ 288 (1288)
...++|.|..|.||||+++.+...+... ...+.+.+..+.... . .... .+.... . ........+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998866533 233444332211110 0 0000 000000 0 0111223466677
Q ss_pred HHhcceEEEEeccCCChHHHHHHH
Q 000780 289 RVRRMKLLIVLDDVNEVGQLKRLI 312 (1288)
Q Consensus 289 ~l~~k~~LlVLDdv~~~~~~~~l~ 312 (1288)
.++..+=.+|++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 777788899999999888765443
No 384
>PHA02244 ATPase-like protein
Probab=93.54 E-value=0.15 Score=58.12 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
...++|....+......+..-. ....-|.|+|++|+|||+||++++......
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l-~~~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIV-NANIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHH-hcCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3457776666544433332111 122346789999999999999999876443
No 385
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.52 E-value=0.059 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
...|.|+|++|.||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45889999999999999999999873
No 386
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.34 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.-.+++|+|..|.|||||++.+.....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 446999999999999999999887543
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.19 Score=54.34 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34578899999999999999999876655545666764
No 388
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.48 E-value=0.2 Score=56.32 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.8
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
..++++++|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999998876543
No 389
>PRK08356 hypothetical protein; Provisional
Probab=93.47 E-value=0.29 Score=51.82 Aligned_cols=22 Identities=45% Similarity=0.443 Sum_probs=19.7
Q ss_pred ceEEEEEecCCchHHHHHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIF 233 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~ 233 (1288)
..+|+|.|++|.||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999994
No 390
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.46 E-value=0.25 Score=62.33 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
.-..|+|+|..|.|||||||.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999864
No 391
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.46 E-value=0.31 Score=50.80 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=26.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
.-.+++|.|..|.|||||++.++..... -.+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITL 61 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEE
Confidence 3468999999999999999999875432 2344444
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.1 Score=60.65 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccce-----eEEeeecccccccC---------------C-ChHHHHHHHHhhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG-----SCFVSDVRGNSETA---------------G-GLEHLQKQMLSTT 270 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~-----~~~~~~~~~~~~~~---------------~-~l~~l~~~ll~~l 270 (1288)
.|.-|++|..|+|||||.+++.+..-..|.. .+++.....+.+.. . .+..+...++..+
T Consensus 106 GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl 185 (582)
T KOG0062|consen 106 GRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL 185 (582)
T ss_pred ccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC
Confidence 4678999999999999999999843344433 33333222111110 0 2223333344443
Q ss_pred cCccccc--------cCCCchhHHHHHHhcceEEEEeccC------CChHHHHHHHhccCCCCCCcEEEEEcCChhHHhh
Q 000780 271 LSEKLEV--------AGPNIPHFTKERVRRMKLLIVLDDV------NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 336 (1288)
Q Consensus 271 ~~~~~~~--------~~~~~~~~l~~~l~~k~~LlVLDdv------~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~ 336 (1288)
+-..... .+-.+.-.+.+.+-.++=|+.||.- ....-++..+.. .+..+||.|.|+..+..
T Consensus 186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t-----~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT-----WKITSLIVSHDRNFLNT 260 (582)
T ss_pred CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh-----CCceEEEEeccHHHHHH
Confidence 3221111 1112234455666678889999954 333334444433 22568888999988776
Q ss_pred h
Q 000780 337 F 337 (1288)
Q Consensus 337 ~ 337 (1288)
.
T Consensus 261 V 261 (582)
T KOG0062|consen 261 V 261 (582)
T ss_pred H
Confidence 5
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.43 E-value=0.18 Score=61.51 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=40.3
Q ss_pred hHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 196 RIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
-+..+.++|..+- ..-.++.|.|.+|+||||||.+++.....+-+.++|+.
T Consensus 248 Gi~~lD~~lgGG~-~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGF-FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3566777776544 55689999999999999999999987766666778875
No 394
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.41 E-value=0.59 Score=57.20 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
..++|....+.++...+.... ..-..|.|+|.+|.|||++|+.+...
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~-~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS-RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh-ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 469999998888887775544 34456789999999999999998874
No 395
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.41 E-value=0.14 Score=58.44 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=61.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
....++|.|..|.||||+++++...+.... ..+.+.+..+.......... +. ..............+.+...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~----l~--~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH----LF--YSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE----EE--ecCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999987664432 34444433332111000000 00 000000111122346777788
Q ss_pred hcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCChh
Q 000780 291 RRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKR 332 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~~~ 332 (1288)
+..+=.+|+|.+...+.++. +.....++.| ++.|+....
T Consensus 216 r~~pd~ii~gE~r~~e~~~~-l~a~~~g~~~--~i~T~Ha~~ 254 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDF-IRAVNTGHPG--SITTLHAGS 254 (308)
T ss_pred cCCCCeEEEeccCCHHHHHH-HHHHhcCCCe--EEEEEeCCC
Confidence 88888999999998776654 3333322222 466665544
No 396
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.39 E-value=0.1 Score=50.75 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.9
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.+++-+.|...- ....+|.+.|.-|.||||+++.++..+
T Consensus 8 t~~l~~~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 8 MDKFGKAFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444443221 334689999999999999999999865
No 397
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.066 Score=55.36 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=23.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 57899999999999999999999876
No 398
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.36 E-value=1.7 Score=52.13 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=48.1
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhh-cccceeEEeeecccccccCCChHHHHHHHH
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFS-HEFEGSCFVSDVRGNSETAGGLEHLQKQML 267 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll 267 (1288)
...|...-...|.+++. +- ....++.|.|.+|+|||++|..++.... .+-..++|+. -. ....++..+++
T Consensus 173 ~~~gi~tG~~~LD~~~~-G~-~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lE-m~~~~l~~Rl~ 243 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN-GL-VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LE-MSAEQLGERLL 243 (421)
T ss_pred CCcceeCCChhHHHHhc-CC-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CC-CCHHHHHHHHH
Confidence 35666666677777664 22 3456888999999999999999997654 3333455654 12 45566777766
Q ss_pred hh
Q 000780 268 ST 269 (1288)
Q Consensus 268 ~~ 269 (1288)
..
T Consensus 244 ~~ 245 (421)
T TIGR03600 244 AS 245 (421)
T ss_pred HH
Confidence 54
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.34 E-value=0.42 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 400
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.33 E-value=0.31 Score=51.95 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.5
Q ss_pred eEEEEEecCCchHHHHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIF 233 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~ 233 (1288)
.+++|+|..|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999985
No 401
>PRK06547 hypothetical protein; Provisional
Probab=93.32 E-value=0.077 Score=54.67 Aligned_cols=27 Identities=41% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
....+|+|.|++|.||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999864
No 402
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.31 E-value=0.11 Score=54.09 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...+|+|.|++|.||||+|++++......-....++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 356899999999999999999999775432233444
No 403
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.31 E-value=6.8 Score=44.23 Aligned_cols=168 Identities=7% Similarity=0.089 Sum_probs=92.3
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc--------c-cc-eeEEeeecccccccCCChHHHHHHH
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH--------E-FE-GSCFVSDVRGNSETAGGLEHLQKQM 266 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~-F~-~~~~~~~~~~~~~~~~~l~~l~~~l 266 (1288)
++.+...+..+ .-.++..++|..|+||+++|+++.+.+-. . .+ ...++ +..+ .. ..+.++. ++
T Consensus 5 ~~~l~~~i~~~--~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-d~~g--~~-i~vd~Ir-~l 77 (299)
T PRK07132 5 IKFLDNSATQN--KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-DIFD--KD-LSKSEFL-SA 77 (299)
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-ccCC--Cc-CCHHHHH-HH
Confidence 34455555432 23567779999999999999999987611 1 11 11222 1101 11 2222322 22
Q ss_pred HhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCChHH--HHHHHhccCCCCCCcEEEEEcC-ChhHHhhhCCccce
Q 000780 267 LSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVGQ--LKRLIGELDQFGQGSRIVVTTR-DKRVLEKFRGEEKK 343 (1288)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~l~~~l~~~~~gsrIivTTR-~~~v~~~~~~~~~~ 343 (1288)
...+..... -.+.+=++|+|+++.... ...|+..+..-.+++.+|++|. ...+.....+ ...
T Consensus 78 ~~~~~~~~~--------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S-Rc~ 142 (299)
T PRK07132 78 INKLYFSSF--------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS-RCQ 142 (299)
T ss_pred HHHhccCCc--------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh-CeE
Confidence 222111100 013455778888865543 5566666655566777776554 4455444321 467
Q ss_pred EEEcCCCCHHHHHHHHhhhhcCCCCCCchHHHHHHHHHhhhcCCchhHHHH
Q 000780 344 IYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 394 (1288)
Q Consensus 344 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 394 (1288)
++++.++++++..+.+.... .+ .+.+..++..++|.=-|++.+
T Consensus 143 ~~~f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EEECCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 89999999999988876541 11 123566666677633455543
No 404
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.30 E-value=0.23 Score=57.63 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=56.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccc---eeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFE---GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 288 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~---~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 288 (1288)
...|.|+|+.|.||||+++++.+.+....+ .++.+.+-.+. ....+... .....+.....+.......++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIETI-SASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----eccccccc-cceeeeeeccccccCHHHHHHH
Confidence 479999999999999999999987654332 23333322111 11111000 0000011111111223467788
Q ss_pred HHhcceEEEEeccCCChHHHHHHHhc
Q 000780 289 RVRRMKLLIVLDDVNEVGQLKRLIGE 314 (1288)
Q Consensus 289 ~l~~k~~LlVLDdv~~~~~~~~l~~~ 314 (1288)
.|+..+-.+++..+.+.+..+..+..
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 88989999999999998887654443
No 405
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.26 E-value=0.12 Score=51.22 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=26.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcc-cceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 247 (1288)
++|.|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999987754 44443443
No 406
>PRK05439 pantothenate kinase; Provisional
Probab=93.26 E-value=0.12 Score=58.24 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
...-+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999886643
No 407
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.25 E-value=0.21 Score=59.08 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=53.6
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCc-cccc----cCC-----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSE-KLEV----AGP----- 280 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~-~~~~----~~~----- 280 (1288)
.-+.++|.|.+|+|||||+..++.....+...++-+..+. ++...+.++.++++..-..+ ..-. +..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liG---ER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG---ERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec---cCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4577899999999999999998876654433333233332 33244566666666541111 1100 110
Q ss_pred ---CchhHHHHHH---hcceEEEEeccCCCh
Q 000780 281 ---NIPHFTKERV---RRMKLLIVLDDVNEV 305 (1288)
Q Consensus 281 ---~~~~~l~~~l---~~k~~LlVLDdv~~~ 305 (1288)
...-.+.+++ +++++|+++||+..-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 0112344555 568999999999543
No 408
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.076 Score=63.78 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=43.5
Q ss_pred CCcccchhhHHHHHHhhccC---CCCCceEEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 188 NGLVGLNSRIEQIKPFLCMD---SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
.+-+|+++-.+.+.+.+.-. .+-+.+++..+|++|||||.+|+.++..+..+|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 46799999999998887532 124568999999999999999999999876665
No 409
>PRK13947 shikimate kinase; Provisional
Probab=93.22 E-value=0.063 Score=55.56 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
-|.|+|++|+||||+|+.+++++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999887544
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.19 E-value=0.071 Score=56.15 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
++.+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999765
No 411
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.19 E-value=0.12 Score=59.71 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHhhccC-----------CCCCceEEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 189 GLVGLNSRIEQIKPFLCMD-----------SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
++||.+...+.+.-.+... .....+-|.++|++|+|||++|++++......|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 6888888777775544321 001246788999999999999999999775443
No 412
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.34 Score=50.07 Aligned_cols=118 Identities=19% Similarity=0.299 Sum_probs=60.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc---------cc-CC
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE---------VA-GP 280 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~-~~ 280 (1288)
.-.+++|.|..|.|||||.+.++.... ...+.+++.... ... .......+.+ .-..+...- .+ +.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~--~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD--LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh--cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHH
Confidence 356899999999999999999987543 234555553211 000 0111111110 000000000 00 00
Q ss_pred CchhHHHHHHhcceEEEEeccCCC------hHHHHHHHhccCCCCCCcEEEEEcCChhHHhh
Q 000780 281 NIPHFTKERVRRMKLLIVLDDVNE------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 336 (1288)
Q Consensus 281 ~~~~~l~~~l~~k~~LlVLDdv~~------~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~ 336 (1288)
...-.+.+.+..++-++++|+-.. ...+..++..+. .+..||++|.+......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh
Confidence 001224445566778999997532 223444444332 35678888888776654
No 413
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.12 E-value=0.31 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
.-.+++|.|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.12 E-value=0.47 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHH
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 415
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.09 E-value=0.15 Score=57.80 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=29.0
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.+++.+.|.||+||||+|.+.+-+.......+.-+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998887766665555443
No 416
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.08 E-value=0.26 Score=58.52 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=53.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhc-ccceeEEeeecccccccCCChHHHHHHHHhhhcC-ccccc----cCC----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLS-EKLEV----AGP---- 280 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~-~~~~~----~~~---- 280 (1288)
.-+.++|.|.+|+|||||+.++++.... +-+.++|+ .+. ++...+.++.+.+...-.. ...-. +..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liG---ER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVG---ERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCC---cchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 4578899999999999999999886653 33455554 332 2224455666666543111 11100 110
Q ss_pred ----CchhHHHHHH---hcceEEEEeccCCCh
Q 000780 281 ----NIPHFTKERV---RRMKLLIVLDDVNEV 305 (1288)
Q Consensus 281 ----~~~~~l~~~l---~~k~~LlVLDdv~~~ 305 (1288)
...-.+.+++ +++++|+++||+..-
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 0112334454 278999999999443
No 417
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.05 E-value=0.097 Score=54.49 Aligned_cols=26 Identities=46% Similarity=0.648 Sum_probs=22.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 418
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.03 E-value=0.22 Score=60.53 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=38.9
Q ss_pred HHHHHHhcceEEEEecc------CCChHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcCC
Q 000780 285 FTKERVRRMKLLIVLDD------VNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNG 349 (1288)
Q Consensus 285 ~l~~~l~~k~~LlVLDd------v~~~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~ 349 (1288)
.+.+.|-.++=+++||. +.....++.++.. -+| .+||.|.|+..+..+ ...++++..
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V---~t~I~~ld~ 225 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNV---ATHILELDR 225 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHH---hhheEEecC
Confidence 34556667788999994 4444556666654 345 699999999998887 455666543
No 419
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.02 E-value=0.11 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCceEEEEEecCCchHHHHHHHHHH
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
.+.+++.|+|+.|.||||+.+.+..
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 3568999999999999999998774
No 420
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.00 E-value=0.12 Score=54.80 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
....+|+|+|++|.||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45679999999999999999999997755433455553
No 421
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.99 E-value=0.13 Score=57.11 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.5
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..-.++.|.|.+|.|||++|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44678999999999999999998776544456777876
No 422
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.97 E-value=0.19 Score=56.20 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+...+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999998776554
No 423
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.96 E-value=0.31 Score=53.86 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=37.5
Q ss_pred HHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeee
Q 000780 200 IKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSD 248 (1288)
Q Consensus 200 l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 248 (1288)
|.++|..+- ..-+++=|+|+.|.||||+|.+++-..+..-..++|++.
T Consensus 49 LD~~LGGGl-~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 49 LDEALGGGL-PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHHhcCCc-ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 444554322 667899999999999999999998877766678899973
No 424
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.94 E-value=0.22 Score=56.29 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=54.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhccc--ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 290 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l 290 (1288)
+.+.|.|..|.||||+++++...+.... ...+-+.+..+..-...+. -.+... .......+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~--------v~~~~~---~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV--------VQLRTS---DDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE--------EEEEec---CCCCCHHHHHHHHh
Confidence 4677999999999999999998775532 2344444332221110000 000000 01113447788888
Q ss_pred hcceEEEEeccCCChHHHHHH
Q 000780 291 RRMKLLIVLDDVNEVGQLKRL 311 (1288)
Q Consensus 291 ~~k~~LlVLDdv~~~~~~~~l 311 (1288)
+..+=.||+..+.+.+.++.+
T Consensus 202 R~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHH
Confidence 888889999999998876654
No 425
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.89 E-value=0.28 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
.|.++|++|.||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877544
No 426
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.87 E-value=0.036 Score=35.21 Aligned_cols=20 Identities=50% Similarity=0.738 Sum_probs=11.9
Q ss_pred CCcEEEccCCCCccCchhhh
Q 000780 887 SLEILYLSGNNFESLPAIIK 906 (1288)
Q Consensus 887 ~L~~L~Ls~n~l~~lp~~l~ 906 (1288)
+|++|+|++|+++.+|+.++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665444
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.85 E-value=0.34 Score=62.08 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=58.3
Q ss_pred cceEEEEeccCCC---hHHH----HHHHhccCCCCCCcEEEEEcCChhHHhhhCC-ccceEEEcCCCCHHHHHHHHhhhh
Q 000780 292 RMKLLIVLDDVNE---VGQL----KRLIGELDQFGQGSRIVVTTRDKRVLEKFRG-EEKKIYRVNGLEFEEAFEHFCNFA 363 (1288)
Q Consensus 292 ~k~~LlVLDdv~~---~~~~----~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 363 (1288)
..+-|+++|..-. ...- ..++..+. ..|+.+|+||....+...... .....+.+. ++. +... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 3688999998743 2222 22333332 357899999999877543211 011111111 111 1111 11111
Q ss_pred cCCCCCCchHHHHHHHHHhhhcCCchhHHHHhhhcCCCCHHHHHHHhhhhhh
Q 000780 364 FKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNR 415 (1288)
Q Consensus 364 f~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 415 (1288)
..+.+... .|-.|++.+ |+|-.+..-|..+.+....+.+.++.++..
T Consensus 476 -~~G~~g~S---~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 476 -LKGIPGES---YAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred -CCCCCCCc---HHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12222222 255666655 888888877777766555566666665543
No 428
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.84 E-value=0.085 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhh
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 429
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.81 E-value=2.1 Score=54.47 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.+.++|.+..++++.+.+..-. .....|.|+|..|+||+++|+++.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4578899888888877765543 233447799999999999999998743
No 430
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.80 E-value=0.35 Score=65.19 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
..+=|.++|++|.|||.||++++....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999998643
No 431
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.80 E-value=0.29 Score=57.68 Aligned_cols=92 Identities=18% Similarity=0.311 Sum_probs=53.5
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcc-cc----ccCCC----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK-LE----VAGPN---- 281 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-~~----~~~~~---- 281 (1288)
.-+.++|.|.+|+|||||+..+......+...++-+..+.+ +...+.++.+++...-.... .- .+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE---R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC---CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45778999999999999999998866544333333333332 22445666666654311111 00 01110
Q ss_pred ----chhHHHHHH---hcceEEEEeccCCCh
Q 000780 282 ----IPHFTKERV---RRMKLLIVLDDVNEV 305 (1288)
Q Consensus 282 ----~~~~l~~~l---~~k~~LlVLDdv~~~ 305 (1288)
..-.+.+++ +++++|+|+||+..-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 112344555 357999999999543
No 432
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.80 E-value=1.5 Score=50.08 Aligned_cols=48 Identities=23% Similarity=0.082 Sum_probs=32.8
Q ss_pred EEEcCCCCHHHHHHHHhhhhcCCCCCC-chHHHHHHHHHhhhcCCchhH
Q 000780 344 IYRVNGLEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGNPLVL 391 (1288)
Q Consensus 344 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal 391 (1288)
+++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764332222 222334566666679998644
No 433
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.78 E-value=0.16 Score=59.36 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=50.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc-c---cCCC-----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE-V---AGPN----- 281 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-~---~~~~----- 281 (1288)
....++|.|..|.|||||++.++..... +..++. .+. ++...+.++.+.++..-+....- . ....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIG---ER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVG---ERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEc---CChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 3567999999999999999998864322 344443 232 22234555555554431111100 0 1110
Q ss_pred ----chhHHHHHH--hcceEEEEeccCCChH
Q 000780 282 ----IPHFTKERV--RRMKLLIVLDDVNEVG 306 (1288)
Q Consensus 282 ----~~~~l~~~l--~~k~~LlVLDdv~~~~ 306 (1288)
..-.+.+++ +++++|+++||+..-.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 011233333 5789999999995443
No 434
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.33 Score=58.86 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=86.4
Q ss_pred CCCCcccchhhHHHHHHhhccCCC---------CCceEEEEEecCCchHHHHHHHHHHHhhccccee---EEeeeccccc
Q 000780 186 SSNGLVGLNSRIEQIKPFLCMDSS---------DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGS---CFVSDVRGNS 253 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~---~~~~~~~~~~ 253 (1288)
...+.-|.|+..+++.+....-.+ .-++=|.++|++|.|||.||++++....-.|-.. -|+.-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem----- 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM----- 222 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh-----
Confidence 456788988887777665543221 2356688999999999999999997644333111 11110
Q ss_pred ccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCC---------------h-HHHHHHHhccCC
Q 000780 254 ETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNE---------------V-GQLKRLIGELDQ 317 (1288)
Q Consensus 254 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---------------~-~~~~~l~~~l~~ 317 (1288)
+ -.. ....+.+.+.+..+.-++.|++|.++. . +.+..++...+.
T Consensus 223 ------------f-VGv-------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 223 ------------F-VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ------------h-cCC-------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 0 000 001111334444455578888886632 1 236777777777
Q ss_pred CCCCcE-EEE-EcCChhHHh-hh-C-CccceEEEcCCCCHHHHHHHHhhhhc
Q 000780 318 FGQGSR-IVV-TTRDKRVLE-KF-R-GEEKKIYRVNGLEFEEAFEHFCNFAF 364 (1288)
Q Consensus 318 ~~~gsr-Iiv-TTR~~~v~~-~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af 364 (1288)
++.+.- |++ .|-.++|+. .+ . +.-++.+.++..+-....+.+.-|+-
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 763332 333 333333332 21 1 12456677777777777777776663
No 435
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.75 E-value=0.16 Score=58.73 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHhhccC--------C---CCCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 189 GLVGLNSRIEQIKPFLCMD--------S---SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~--------~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+++|.+..++.+..++... . ....+-|.++|++|+|||++|+.++..+...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 6888888888887666320 0 0113678999999999999999999876544
No 436
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.69 E-value=0.95 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
...+++++|..|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999888753
No 437
>PRK15115 response regulator GlrR; Provisional
Probab=92.68 E-value=2.2 Score=51.73 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHh
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
..++|....+.++.+....-. .....|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc-cCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 358888877777666554333 233456799999999999999988743
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.63 E-value=0.17 Score=53.14 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=27.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVR 250 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~ 250 (1288)
.|+|+|-||+||||+|..++.++..+-...+.+.+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999997776655543445554443
No 439
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.62 E-value=0.85 Score=46.19 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=36.7
Q ss_pred hhHHHHHHhcceEEEEeccCCC----hHHHHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcCC
Q 000780 283 PHFTKERVRRMKLLIVLDDVNE----VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNG 349 (1288)
Q Consensus 283 ~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~ 349 (1288)
...+.+++.++ =+.|||.-+. ..|++-+.....-...|+.|||.|.++-+...- ...+|+...
T Consensus 137 ~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP---~A~I~~~~~ 203 (233)
T COG3910 137 LAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIP---GAEIYEISE 203 (233)
T ss_pred HHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCC---CcEEEEEec
Confidence 35555555554 4778997643 345444332222224679999999988765543 345666543
No 440
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.53 E-value=0.29 Score=54.56 Aligned_cols=38 Identities=32% Similarity=0.247 Sum_probs=34.7
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
+.-+++.|+|.+|.|||++|.++..+...+.+.++|+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56789999999999999999999998888888899986
No 441
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.51 E-value=0.44 Score=62.18 Aligned_cols=227 Identities=15% Similarity=0.165 Sum_probs=106.6
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhccc----ceeEEee--ecccccccCCChHHHHHHHHhhhcCccccccCCCchhHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEF----EGSCFVS--DVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFT 286 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F----~~~~~~~--~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l 286 (1288)
.-+.|+|-+|.||||+.+.++-....+. +..+|+. ............ .+..-+...+...... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~---~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIA---KQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCc---chhhHHH
Confidence 4678999999999999999886443221 2233332 111111110010 1222222211111111 1111223
Q ss_pred HHHHhcceEEEEeccCCChHH------HHHHHhccCCCCCCcEEEEEcCChhHHhhhCCccceEEEcCCCCHHHHHHH--
Q 000780 287 KERVRRMKLLIVLDDVNEVGQ------LKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEH-- 358 (1288)
Q Consensus 287 ~~~l~~k~~LlVLDdv~~~~~------~~~l~~~l~~~~~gsrIivTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~L-- 358 (1288)
.++++..++|+.+|.++.... ...+-...++ -+.+++|+|+|....-.... ....+++..+.++.-.+.
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~--~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFK--GFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhh--hhhhccchhhhHHHHHHHHH
Confidence 578899999999999876442 2222111222 35889999998765544332 233455555555433221
Q ss_pred ------HhhhhcCCCCCC-chH-HHH---HHHHHhhhcCCchhHHHHhhhcC------CCCHHHHHHHhhhhhhcCccch
Q 000780 359 ------FCNFAFKENHCP-EDL-NWH---SRSVVSYTKGNPLVLEVLGSSLC------LKRKSHWGKVLHDLNRICESEI 421 (1288)
Q Consensus 359 ------f~~~af~~~~~~-~~~-~~l---~~~i~~~~~GlPLal~~lg~~L~------~~~~~~w~~~l~~l~~~~~~~~ 421 (1288)
+....++..... ..+ ..+ ..+-++.....|++|...+..-. ....+-++.+++.+-...+..-
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~ 455 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETR 455 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhh
Confidence 211122211111 001 111 12333444778988888774432 2345556666655433222111
Q ss_pred hhHHHHHHhhhcCCC-hhhHH-Hhhhcccc
Q 000780 422 HDIYDILKISFNKLT-PRVKS-IFLDIACF 449 (1288)
Q Consensus 422 ~~i~~~l~~sy~~L~-~~~k~-~fl~~a~f 449 (1288)
...+...|+.+. +...+ ++..+|.+
T Consensus 456 ---~~~~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 456 ---GIKWSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred ---hhcchhhhcccchHHHHHHHHHHHHHH
Confidence 122334455553 33334 55555543
No 442
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.51 E-value=0.17 Score=55.19 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=26.4
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
....+|||.|+.|.|||||++.+...++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999876554
No 443
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.51 E-value=0.08 Score=55.12 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 444
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.50 E-value=0.42 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.2
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
.-.+++|.|..|.|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 445
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.47 E-value=0.081 Score=52.33 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=22.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhccc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHEF 240 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~F 240 (1288)
.|+|+|+.|+|||||++.+...+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998664443
No 446
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.44 Score=48.39 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
-..+.|.|..|+|||||-|.++--.+
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccC
Confidence 35788999999999999999986443
No 447
>PRK13949 shikimate kinase; Provisional
Probab=92.40 E-value=0.1 Score=53.80 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 448
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.39 E-value=0.12 Score=54.14 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=30.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
.+++.|+|+.|+|||||++++......+|..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 478999999999999999999999988886555443
No 449
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.39 E-value=0.087 Score=56.81 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=22.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 450
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.38 E-value=0.28 Score=54.63 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=61.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhh-hcCc-------cccccCCCc-
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSE-------KLEVAGPNI- 282 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~-------~~~~~~~~~- 282 (1288)
-.-+|+.|-+|+|||-+.+++.+.+..+..+...+..+.+... .-.++..++... ...+ ..+..+.+.
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR---EGndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccccc---chHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 3568999999999999999999988777666555555544333 234555555443 1111 011111110
Q ss_pred ----hhHHHHHHh---cceEEEEeccCCChHH----HHHHHhccCC
Q 000780 283 ----PHFTKERVR---RMKLLIVLDDVNEVGQ----LKRLIGELDQ 317 (1288)
Q Consensus 283 ----~~~l~~~l~---~k~~LlVLDdv~~~~~----~~~l~~~l~~ 317 (1288)
.-.+.++++ ++.+|+.+||+..-.| +..+++..|.
T Consensus 224 ValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 224 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred ehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 012334444 5689999999955433 6677766654
No 451
>PRK14528 adenylate kinase; Provisional
Probab=92.34 E-value=0.34 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred eEEEEEecCCchHHHHHHHHHHHh
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+.|.|.|++|.||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998765
No 452
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.34 E-value=0.3 Score=53.94 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhh--cc----cceeEEee
Q 000780 197 IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFS--HE----FEGSCFVS 247 (1288)
Q Consensus 197 ~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~----F~~~~~~~ 247 (1288)
.+.|.++|..+- ....+.=|+|.+|+|||+||..++-... .. =..++|++
T Consensus 24 ~~~lD~~L~GGi-~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 24 CKSLDELLGGGI-PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp SHHHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred CHHHHHhhCCCC-CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 345666664332 3456889999999999999998875432 11 23467775
No 453
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=92.34 E-value=0.55 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=20.2
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
++++|.|+.|.||||+.+.+.-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 454
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.33 E-value=0.29 Score=53.59 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcc------cceeEEee
Q 000780 199 QIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE------FEGSCFVS 247 (1288)
Q Consensus 199 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~ 247 (1288)
.|.++|..+- ..-.++.|+|.+|.|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGI-ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCC-CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3445554332 456899999999999999999997543222 35777876
No 455
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.28 E-value=0.44 Score=50.72 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998865
No 456
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.26 E-value=0.39 Score=52.65 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 198 EQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 198 ~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
..|.++|..+- ....++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34555564433 56789999999999999999998775445557788876
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.25 E-value=0.087 Score=56.03 Aligned_cols=23 Identities=52% Similarity=0.797 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+|||.|.+|.||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.24 E-value=0.29 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 459
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.24 E-value=0.26 Score=54.10 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=49.3
Q ss_pred CceEEEEEecCCchHHHHH-HHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcc-cc----ccCCC---
Q 000780 211 TVQIVGIWGMGGIGKTTLA-KAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK-LE----VAGPN--- 281 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA-~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-~~----~~~~~--- 281 (1288)
.-+.++|.|.+|+|||+|| ..+.++. +-+.++.+..+.+ +...+.++.+++...-..+. .- .+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGe---r~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQ---KASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEeccc---chHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3467899999999999996 4555543 2344534433332 22445566666664311110 00 01100
Q ss_pred -----chhHHHHHH--hcceEEEEeccCCChH
Q 000780 282 -----IPHFTKERV--RRMKLLIVLDDVNEVG 306 (1288)
Q Consensus 282 -----~~~~l~~~l--~~k~~LlVLDdv~~~~ 306 (1288)
..-.+.+++ +++.+|+|+||+..-.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 011222332 4789999999996543
No 460
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.22 E-value=0.16 Score=52.04 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEecCCchHHHHHHHHHHHhhc
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 461
>PRK13948 shikimate kinase; Provisional
Probab=92.20 E-value=0.12 Score=53.80 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhc
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSH 238 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 238 (1288)
...+.|.++|+.|.||||+++.+..++..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999988743
No 462
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.19 E-value=0.11 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=22.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
+|.|.|++|.||||+|+.+++...-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68899999999999999999876443
No 463
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.19 E-value=2.1 Score=48.79 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=33.2
Q ss_pred ceEEEcCCCCHHHHHHHHhhhhcCC----CCCCchHHHHHHHHHhhhcCCchhHHHHhhhc
Q 000780 342 KKIYRVNGLEFEEAFEHFCNFAFKE----NHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 398 (1288)
Q Consensus 342 ~~~~~l~~L~~~ea~~Lf~~~af~~----~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 398 (1288)
..+++|+..+.+|+.++...+.-.. ..+. ++.-+++.-..+|+|--++-++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3468888999999988876654221 1111 2234566666788886666655544
No 464
>PRK06217 hypothetical protein; Validated
Probab=92.19 E-value=0.098 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHhh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.|.|.|.+|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 465
>PRK08506 replicative DNA helicase; Provisional
Probab=92.19 E-value=0.96 Score=54.84 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=48.7
Q ss_pred CcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHh
Q 000780 189 GLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLS 268 (1288)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 268 (1288)
...|...-...|.+++. +- ....++.|-|.+|+|||++|..++.....+=..++|+. -. ....++..+++.
T Consensus 171 ~~~Gi~TG~~~LD~~~~-G~-~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lE-Ms~~ql~~Rlla 241 (472)
T PRK08506 171 DIIGLDTGFVELNKMTK-GF-NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LE-MPAEQLMLRMLS 241 (472)
T ss_pred CCCcccCChHHHHhhcC-CC-CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------Cc-CCHHHHHHHHHH
Confidence 35566666777777653 22 34568889999999999999999887644333455553 12 455677777766
Q ss_pred h
Q 000780 269 T 269 (1288)
Q Consensus 269 ~ 269 (1288)
.
T Consensus 242 ~ 242 (472)
T PRK08506 242 A 242 (472)
T ss_pred H
Confidence 5
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.14 E-value=0.28 Score=62.03 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=25.9
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
.-..++|+|..|.|||||++.+..-+ . .++.+.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i 408 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKI 408 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEE
Confidence 44789999999999999999987654 2 2444444
No 467
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.11 E-value=0.51 Score=49.37 Aligned_cols=26 Identities=46% Similarity=0.627 Sum_probs=22.4
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
.-.+++|.|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 468
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.09 E-value=0.21 Score=51.06 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 239 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 239 (1288)
...+++|+|..|.|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999877653
No 469
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.07 E-value=0.19 Score=62.48 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=56.6
Q ss_pred cccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhc-ccceeEEeeecccccccCCChH
Q 000780 182 VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLE 260 (1288)
Q Consensus 182 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~ 260 (1288)
.++.....++|.+..++.|...+... +.+.++|.+|+||||+|+.+++.+.. .++..+|..+. . ....
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np-----~-~~~~ 93 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP-----E-DPNN 93 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC-----C-cchH
Confidence 34455567999998888888777532 46889999999999999999987643 35777777652 1 4555
Q ss_pred HHHHHHHhhhc
Q 000780 261 HLQKQMLSTTL 271 (1288)
Q Consensus 261 ~l~~~ll~~l~ 271 (1288)
.+.+.+..+++
T Consensus 94 ~~~~~v~~~~G 104 (637)
T PRK13765 94 PKIRTVPAGKG 104 (637)
T ss_pred HHHHHHHHhcC
Confidence 66666665443
No 470
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.03 E-value=0.15 Score=52.21 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=33.8
Q ss_pred cccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 190 LVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
+||.+..++++.+.+..-. ....-|.|+|..|.||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a-~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-SSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh-CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 4788888888888876644 23355669999999999999999984
No 471
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.99 E-value=0.11 Score=52.14 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
+|.|.|.+|.||||+|+++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 472
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.98 E-value=0.12 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.96 E-value=0.57 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.0
Q ss_pred CceEEEEEecCCchHHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
.-.+++|+|..|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999853
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.96 E-value=0.12 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhh
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.+++|.|++|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 475
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.95 E-value=0.97 Score=48.67 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=21.3
Q ss_pred CceEEEEEecCCchHHHHHHHHHH
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
..++++|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999876
No 476
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=91.92 E-value=1.4 Score=43.89 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHhhccceEEEEeccCcccchhhHHHHHHHHHHhhcCCcEEEEEEeecC
Q 000780 57 PALLNAIQGSKISVVIFSKDYASSKWCLHELLKILECKKMKGQIIIPVFYGVS 109 (1288)
Q Consensus 57 ~~l~~ai~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ 109 (1288)
.++.++|+++.+.+.|++.+...+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 367899999999999998766555552 24555554331 2334555544444
No 477
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.89 E-value=0.22 Score=56.61 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=26.9
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
|++.+.|-||+||||+|.+.+-..+.+=..+.-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 68899999999999999998887666544444443
No 478
>PRK13946 shikimate kinase; Provisional
Probab=91.89 E-value=0.12 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.+.|.+.|++|.||||+|+.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999873
No 479
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.89 E-value=0.14 Score=54.49 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecc
Q 000780 210 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVR 250 (1288)
Q Consensus 210 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~ 250 (1288)
.....|.++||+|.||||..+.++..++.++.. .|+.|+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 445678899999999999999999877766543 3444443
No 480
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=91.89 E-value=1.2 Score=48.71 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhccccccccCCCCCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccc
Q 000780 162 DAQLVNKIVEDVLKKLEKITVSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE 241 (1288)
Q Consensus 162 e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~ 241 (1288)
+...++.-.+....+......+....+.|+|-..- +++..++.... ...+.+.++|+.|+|||+-++.+++.. +
T Consensus 46 ~~~~~~a~ia~~le~~~~q~~~~~~~~~~l~tkt~-r~~~~~~~~A~-k~g~l~~vyg~~g~gKt~a~~~y~~s~----p 119 (297)
T COG2842 46 DYATNEAKIAAFLEKKGVQAALEKLAPDFLETKTV-RRIFFRTRPAS-KTGSLVVVYGYAGLGKTQAAKNYAPSN----P 119 (297)
T ss_pred hHHHHHHHHHHHHcCCCcccccccccccccccchh-HhHhhhhhhhh-hcCceEEEeccccchhHHHHHhhcccC----c
Confidence 33334433344443333323455566788887653 23334443333 344588999999999999999999764 2
Q ss_pred eeEEeeecccccccCCChHHHHHHHHhh-hcCccccccCCCchhHHHHHHhcceEEEEeccCCCh--HHHHHHHhccC
Q 000780 242 GSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELD 316 (1288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~ 316 (1288)
. .|+.- .++.+....++..+... +....... .+....+..++++..=+++.|..+.. ..++.+.....
T Consensus 120 ~-~~l~~----~~p~~~a~~~i~~i~~~~~~~~~~~~--~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 120 N-ALLIE----ADPSYTALVLILIICAAAFGATDGTI--NDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred c-ceeec----CChhhHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 2 33321 22224444445444444 22222111 11224455566777888888887653 34566555544
No 481
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.86 E-value=0.27 Score=53.57 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccc
Q 000780 199 QIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSE 254 (1288)
Q Consensus 199 ~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~ 254 (1288)
++...+.... +...+|||.|.||+|||||.-++..++..+=..+.- ..+...|.
T Consensus 39 ~ll~~l~p~t-G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaV-lAVDPSSp 92 (323)
T COG1703 39 ELLRALYPRT-GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAV-LAVDPSSP 92 (323)
T ss_pred HHHHHHhhcC-CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEE-EEECCCCC
Confidence 4444444444 678899999999999999999999887665333333 23444443
No 482
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.83 E-value=0.19 Score=52.66 Aligned_cols=21 Identities=29% Similarity=0.131 Sum_probs=18.8
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 000780 214 IVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999883
No 483
>PRK14529 adenylate kinase; Provisional
Probab=91.82 E-value=0.59 Score=50.16 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=46.7
Q ss_pred EEEEecCCchHHHHHHHHHHHhhccc-ceeEEeeecccccccCCChHHHHHHHHhhhcCccccccCCCchhHHHHHHhcc
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQFSHEF-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRM 293 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k 293 (1288)
|.|.|++|.||||+|+.++.++.-.+ ...-. +++.......+....++++.. ..-....-+...+.+++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl---lr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAI---FREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchh---hhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhcc
Confidence 67899999999999999998764322 11111 111111112222333333322 11111122335566666432
Q ss_pred -eEEEEeccC-CChHHHHHH
Q 000780 294 -KLLIVLDDV-NEVGQLKRL 311 (1288)
Q Consensus 294 -~~LlVLDdv-~~~~~~~~l 311 (1288)
.-=+|||+. .+.+|.+.|
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHH
Confidence 345899998 455565544
No 484
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.75 E-value=0.0042 Score=74.41 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCcEEEeccCCCCC----CCCCcCCCCchHHHHhhcccCCcc-----CCccc----ccCCCCcEEEcCCCCCCCcccc--
Q 000780 792 GLEVLFVEDCSKLD----NLPDNIGSLEYLYYILAAASAISQ-----LPSSV----ALSNMLRSLDSSHCKGLESFPR-- 856 (1288)
Q Consensus 792 ~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~~~l~~-----lp~~l----~~l~~L~~L~L~~~~~~~~~~~-- 856 (1288)
.|+.|.+..|.+.. .+...+.....++.++++.|.+.. ++..+ ....+++.|++++|..+...-.
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34445555555442 233444456666666666665531 12222 2355677777777765422111
Q ss_pred -ccccCCCC-CcEEEecCCCCCC-----CchhhcCC-CCCcEEEccCCCCc-----cCchhhhcCCCCCEEEecCCCCCC
Q 000780 857 -TFLLGLSA-MGLLHISDYAVRE-----IPQEIAYL-SSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNMLQ 923 (1288)
Q Consensus 857 -~~~~~~~~-L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~l~ 923 (1288)
..+...+. +..|++.+|.+.+ +...+..+ ..++.++++.|.++ .+...+..++.++.|.+++|+...
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11223333 5567777777764 23344455 67788888888776 345566677778888887776543
No 485
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=2.5 Score=51.92 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCCcccchhhHHHHH----------HhhccCCCCCceEEEEEecCCchHHHHHHHH
Q 000780 163 AQLVNKIVEDVLKKLEKITVSTDSSNGLVGLNSRIEQIK----------PFLCMDSSDTVQIVGIWGMGGIGKTTLAKAI 232 (1288)
Q Consensus 163 ~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~----------~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~ 232 (1288)
++.+.++.+.-...+...-.|...=+++=|.++-..+|. +++..+- .+..=|.++|++|.|||-+|++|
T Consensus 647 ~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssgl-rkRSGILLYGPPGTGKTLlAKAV 725 (953)
T KOG0736|consen 647 DKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGL-RKRSGILLYGPPGTGKTLLAKAV 725 (953)
T ss_pred HHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccc-cccceeEEECCCCCchHHHHHHH
Q ss_pred HHHhhcccceeEEeeecccccccCCChH--HHHHHHHhhhcCccccccCCCchhHHHHHHhcceEEEEeccCCC------
Q 000780 233 FDQFSHEFEGSCFVSDVRGNSETAGGLE--HLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNE------ 304 (1288)
Q Consensus 233 ~~~~~~~F~~~~~~~~~~~~~~~~~~l~--~l~~~ll~~l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~------ 304 (1288)
+...+=.| ..++ +++.....+ +..++.+.+.+.-..++++|.+|.++.
T Consensus 726 ATEcsL~F----------------lSVKGPELLNMYVGq--------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG 781 (953)
T KOG0736|consen 726 ATECSLNF----------------LSVKGPELLNMYVGQ--------SEENVREVFERARSAAPCVIFFDELDSLAPNRG 781 (953)
T ss_pred HhhceeeE----------------EeecCHHHHHHHhcc--------hHHHHHHHHHHhhccCCeEEEeccccccCccCC
Q ss_pred -------------hHHHHHHHhccCCCCCCcEEEEEcCChhHHhhh---CCccceEEEcCCCCHHHHHHHHhhhhcCCCC
Q 000780 305 -------------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF---RGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 368 (1288)
Q Consensus 305 -------------~~~~~~l~~~l~~~~~gsrIivTTR~~~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~ 368 (1288)
.+-+.++-+.......+--||=.|-.++++... .+.-+....|+.=+++|...=.-+..-+.-.
T Consensus 782 ~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk 861 (953)
T KOG0736|consen 782 RSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK 861 (953)
T ss_pred CCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc
Q ss_pred CCchHHHHHHHHHhhh
Q 000780 369 CPEDLNWHSRSVVSYT 384 (1288)
Q Consensus 369 ~~~~~~~l~~~i~~~~ 384 (1288)
-.++.. ..+|+++|
T Consensus 862 LdedVd--L~eiAk~c 875 (953)
T KOG0736|consen 862 LDEDVD--LVEIAKKC 875 (953)
T ss_pred CCCCcC--HHHHHhhC
No 486
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.71 E-value=0.12 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHh
Q 000780 214 IVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
++.+.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998863
No 487
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.71 E-value=0.5 Score=56.05 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=49.1
Q ss_pred CceEEEEEecCCchHHHHHHH-HHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc--c---cC-----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKA-IFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE--V---AG----- 279 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~---~~----- 279 (1288)
.-+.++|.|-.|+||||||.. +.++. .-+..|.+..+.+ +...+.++.+.+...-..+..- . +.
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGe---r~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIGQ---KASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEecC---CchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 346789999999999999764 44442 3355533333432 2244556666665541111100 0 11
Q ss_pred -------CCchhHHHHHHhcceEEEEeccCCCh
Q 000780 280 -------PNIPHFTKERVRRMKLLIVLDDVNEV 305 (1288)
Q Consensus 280 -------~~~~~~l~~~l~~k~~LlVLDdv~~~ 305 (1288)
..+.+.++. +++++|+|+||+...
T Consensus 215 ~~ap~~a~aiAEyfr~--~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 215 YLAPYTGAALAEYFMY--RGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHHhhHHHHHHH--cCCCEEEEEcChhHH
Confidence 112233332 478999999999543
No 488
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.70 E-value=1 Score=54.65 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=35.7
Q ss_pred CCcccchhhHHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHH
Q 000780 188 NGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ 235 (1288)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 235 (1288)
..++|....++++...+..-.... ..|.|+|..|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~-~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSD-ITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCC-CCEEEECCCCcCHHHHHHHHHHh
Confidence 458898888888877775433123 44569999999999999999864
No 489
>PRK14526 adenylate kinase; Provisional
Probab=91.70 E-value=0.24 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEecCCchHHHHHHHHHHHh
Q 000780 215 VGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 215 v~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
++|.|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 490
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.70 E-value=0.24 Score=59.92 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=68.1
Q ss_pred ccchhh-HHHHHHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhh
Q 000780 191 VGLNSR-IEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST 269 (1288)
Q Consensus 191 vGr~~~-~~~l~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 269 (1288)
.|...+ ++.+..++. ....+|.|.|+.|.||||+..++.+.+...-..++-+.+-.+..- .++ .+
T Consensus 224 Lg~~~~~~~~l~~~~~----~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q 289 (486)
T TIGR02533 224 LGMSPELLSRFERLIR----RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQ 289 (486)
T ss_pred cCCCHHHHHHHHHHHh----cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ce
Confidence 444433 344444443 234689999999999999999888766433233444443211110 011 01
Q ss_pred hcCccccccCCCchhHHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCC
Q 000780 270 TLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRD 330 (1288)
Q Consensus 270 l~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~ 330 (1288)
... ....+......++..|+..+=.|++..+.+.+.....+... ..|-.|+-|-.-
T Consensus 290 ~~v--~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa 345 (486)
T TIGR02533 290 IQV--NPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHT 345 (486)
T ss_pred EEE--ccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECC
Confidence 000 00011233478888999999999999999998755544332 234444444343
No 491
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.67 E-value=0.7 Score=48.60 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.4
Q ss_pred eEEEEEecCCchHHHHHHHHHH
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFD 234 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~ 234 (1288)
--|.|+|.+|+|||+|+..+.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4567999999999999999886
No 492
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.65 E-value=0.34 Score=57.09 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=49.1
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcccceeEEeeecccccccCCChHHHHHHHHhhhcCcccc--c---cCCC----
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE--V---AGPN---- 281 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~---~~~~---- 281 (1288)
....++|.|..|+|||||++.+++.... +..++. .+. ++...+..+.+..+.+-+.+..- . +...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~-~iG---ER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIG-LIG---ERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEE-EEe---cCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 4578899999999999999998875533 334443 222 22233445554444331111100 0 1100
Q ss_pred ----chhHHHHHH--hcceEEEEeccCCCh
Q 000780 282 ----IPHFTKERV--RRMKLLIVLDDVNEV 305 (1288)
Q Consensus 282 ----~~~~l~~~l--~~k~~LlVLDdv~~~ 305 (1288)
..-.+.+++ +++.+|+++||+..-
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 011233344 578999999999543
No 493
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.62 E-value=0.15 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.7
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 494
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.61 E-value=0.65 Score=48.43 Aligned_cols=111 Identities=16% Similarity=0.131 Sum_probs=56.7
Q ss_pred CceEEEEEecCCchHHHHHHHHHHHhhcc---cc-eeEEeeecc-cccccCCChHHHHHHHHhhhcCccccccCC-Cchh
Q 000780 211 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE---FE-GSCFVSDVR-GNSETAGGLEHLQKQMLSTTLSEKLEVAGP-NIPH 284 (1288)
Q Consensus 211 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---F~-~~~~~~~~~-~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-~~~~ 284 (1288)
...-..|.|++|+|||||.+.+++-++.. |. ..+-+.+-+ +......+.-+... ...... .+.. ....
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~--g~R~dV----ld~cpk~~g 209 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGR--GRRMDV----LDPCPKAEG 209 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhh--hhhhhh----cccchHHHH
Confidence 34446799999999999999999865443 32 233332221 11110001111111 000000 0000 0011
Q ss_pred HHHHHHhcceEEEEeccCCChHHHHHHHhccCCCCCCcEEEEEcCC
Q 000780 285 FTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRD 330 (1288)
Q Consensus 285 ~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIivTTR~ 330 (1288)
++...-.-.+=++|+|.+-..++..++...+ ..|-++|.|..-
T Consensus 210 mmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 1111222346789999998888877766654 467787777553
No 495
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.61 E-value=0.2 Score=55.89 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.+-|.++|+.|+|||++++.+..+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC
Confidence 36678999999999999999887543
No 496
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.61 E-value=0.27 Score=55.52 Aligned_cols=60 Identities=25% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCCCcccchhhHHHH---HHhhccCCCCCceEEEEEecCCchHHHHHHHHHHHhhcccceeEEe
Q 000780 186 SSNGLVGLNSRIEQI---KPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 246 (1288)
Q Consensus 186 ~~~~~vGr~~~~~~l---~~~L~~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 246 (1288)
...++||.....+.. .+++.... -.-+.|.+.|++|.|||+||.++++.+..+.+.+...
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS 84 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence 456899988776554 34444433 3468899999999999999999999998887776654
No 497
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.59 E-value=0.12 Score=51.53 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 000780 214 IVGIWGMGGIGKTTLAKAIF 233 (1288)
Q Consensus 214 vv~I~G~gGiGKTtLA~~~~ 233 (1288)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.59 E-value=0.14 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHhh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQFS 237 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 237 (1288)
.+.|.|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998753
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.59 E-value=0.18 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.8
Q ss_pred ceEEEEEecCCchHHHHHHHHHHHh
Q 000780 212 VQIVGIWGMGGIGKTTLAKAIFDQF 236 (1288)
Q Consensus 212 ~~vv~I~G~gGiGKTtLA~~~~~~~ 236 (1288)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 500
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.56 E-value=0.21 Score=55.56 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=29.5
Q ss_pred eEEEEEecCCchHHHHHHHHHHHhhcccceeEEee
Q 000780 213 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 247 (1288)
Q Consensus 213 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 247 (1288)
++|+|+|.+|+|||||+.++...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 566665
Done!