Query 000780
Match_columns 1288
No_of_seqs 707 out of 6674
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 17:28:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000780.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_549-552//hhsearch_pdb/000780hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 1.0 1 1 356.0 12.5 175 1-184 1-175 (176)
2 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 355.6 26.4 299 191-505 131-473 (549)
3 3ozi_A L6TR; plant TIR domain, 1.0 1 1 349.0 11.2 169 7-179 32-202 (204)
4 3rgz_A Protein brassinosteroid 1.0 1 1 345.1 30.9 385 554-947 148-555 (768)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 342.6 23.1 306 182-503 118-452 (1249)
6 3rgz_A Protein brassinosteroid 1.0 1 1 337.0 27.6 224 700-925 226-458 (768)
7 1vt4_I APAF-1 related killer D 1.0 1 1 308.1 20.5 298 187-523 127-458 (1221)
8 1z6t_A APAF-1, apoptotic prote 1.0 1 1 302.9 20.3 341 182-541 118-508 (591)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 299.3 29.6 484 537-1056 37-560 (606)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 298.4 24.9 381 536-920 326-787 (876)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=355.97 Aligned_cols=175 Identities=42% Similarity=0.775 Sum_probs=165.9
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 99999999940299804236678861799999872249910395198998999730999997620433789723674456
Q 000780 1 MASSSSSSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYASS 80 (1288)
Q Consensus 1 m~~s~~~~~~~dvfis~~~~d~~~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s 80 (1288)
|++| ..++|||||||||+|+|++|++||+++| +++||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|
T Consensus 1 msss--~~~~yDVFiSfrg~D~r~~Fv~~L~~~L-~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S 77 (176)
T 3jrn_A 1 MSSH--TATKYDVFLSFRGHDTRHNFISFLYKEL-VRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAAS 77 (176)
T ss_dssp --------CCEEEEEEECHHHHTTTHHHHHHHHH-HHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTC
T ss_pred CCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_conf 9998--8988849997867466748999999999-978998998764235778557999999996888999824886777
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 44399999999975128968998983218841023446268989999988179947799999999741423798874478
Q 000780 81 KWCLHELLKILECKKMKGQIIIPVFYGVSPSDVRHQNGTFGDGFDELKKQFQDKPEMVLKWRDALTETSHLAGHESAKFR 160 (1288)
Q Consensus 81 ~wc~~El~~~~~~~~~~~~~v~Pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 160 (1288)
.||++||++|++|.+.++++|+||||+|+|++||+|+|+||+||++|+.+ ...+++++||.||+++|+++|| +. .+
T Consensus 78 ~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~-~~-~~ 153 (176)
T 3jrn_A 78 SWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGD-CS-GD 153 (176)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCE-EC-CS
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCE-EC-CC
T ss_conf 16899999877654158877999984487888353157099999999820--4789999999999997466635-25-88
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 948999999999997100244456
Q 000780 161 HDAQLVNKIVEDVLKKLEKITVST 184 (1288)
Q Consensus 161 ~e~~~i~~i~~~v~~~l~~~~~~~ 184 (1288)
+|+++|++||++|+++|+. +++
T Consensus 154 ~e~~~i~~Iv~~v~~~l~~--~~~ 175 (176)
T 3jrn_A 154 DDSKLVDKIANEISNKKTI--YAT 175 (176)
T ss_dssp CHHHHHHHHHHHHHTTCC------
T ss_pred CHHHHHHHHHHHHHHHHCC--CCC
T ss_conf 7999999999999998667--898
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=355.57 Aligned_cols=299 Identities=16% Similarity=0.127 Sum_probs=234.3
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHH----HHHCCCCEEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 12113698888852027999816999981387548899999999----86214650399620532125679969999999
Q 000780 191 VGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFD----QFSHEFEGSCFVSDVRGNSETAGGLEHLQKQM 266 (1288)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~l 266 (1288)
|||+.++++|.++|....+..+++|+|+|||||||||||+++|+ +++.+|+.++|+ ++++... .++..++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCC--CCHHHHHHHH
T ss_conf 784179999999872515789628999869999889999999984069874669957999-9789878--7999999999
Q ss_pred HHHHCCCCC--CCCC-CC-----CHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 842117563--1149-99-----626899987146-08999656899578999970249889995899990885678640
Q 000780 267 LSTTLSEKL--EVAG-PN-----IPHFTKERVRRM-KLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 337 (1288)
Q Consensus 267 l~~l~~~~~--~~~~-~~-----~~~~l~~~l~~k-k~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIIiTTR~~~~~~~~ 337 (1288)
+..++.... .... .. +...+++.+.++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHC
T ss_conf 999853755345555331469999999999976898489999799971441-5432-----6998899974977999970
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH-HHHHC
Q ss_conf 79601199758999778999996400399999711799999998420699416898842208989889998756-54311
Q 000780 338 RGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLH-DLNRI 416 (1288)
Q Consensus 338 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~-~l~~~ 416 (1288)
+. ...+|++++|+.+||++||.++||.... ...+.+++++|+++|+|+|||++++|+.++.+.. +|...+. .+...
T Consensus 282 ~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQ-TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CS-CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred CC-CCEEEECCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH-HHHHHHHHHHHCC
T ss_conf 88-9738989998989999999987448998-5568999999999959983999999998443448-9998757876136
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHH-----------HCCCCCCCCCHHHHHHHHHH---------------HHHHHH
Q ss_conf 8632355897887300389965687863-----------20024689896689997512---------------146566
Q 000780 417 CESEIHDIYDILKISFNKLTPRVKSIFL-----------DIACFFEGEDKDFVASILDD---------------SESDVL 470 (1288)
Q Consensus 417 ~~~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~~~l~~---------------~~~~~l 470 (1288)
....+ ..++++||+.|+...|.||+ +||+||+++.++ +..+... .+..++
T Consensus 359 ~~~~i---~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l 434 (549)
T 2a5y_B 359 GLVGV---ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRL 434 (549)
T ss_dssp CSSTT---CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHH
T ss_pred CHHHH---HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE-EEEEEEECCCEECCCCCCCCHHHHHHHH
T ss_conf 47778---9897516202267999997526522336743235608997666-5331101355002677899999999999
Q ss_pred HHHHCCCCEEEE----CCEEEECHHHHHHHHHHHHCCCC
Q ss_conf 786317570581----99898007899999997630265
Q 000780 471 DILIDKSLVSIS----GNFLNMHDILQEMGRQIVRQESE 505 (1288)
Q Consensus 471 ~~L~~~sLi~~~----~~~~~mHdli~~~~~~i~~~e~~ 505 (1288)
++|+++||++.. ...|+|||++|+++++++++++.
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999875883671479804999676999999999889899
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=1.00 E-value=1 Score=348.96 Aligned_cols=169 Identities=44% Similarity=0.752 Sum_probs=160.3
Q ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 99940299804236678861799999872249910395198998999730999997620433789723674456443999
Q 000780 7 SSGNYEVFLNFRGEDTRTSFTCHLYDNLYERKKIRTFIDDEGLRRGDEISPALLNAIQGSKISVVIFSKDYASSKWCLHE 86 (1288)
Q Consensus 7 ~~~~~dvfis~~~~d~~~~~~~~l~~~l~~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~wc~~E 86 (1288)
+.++|||||||||+|+|.+|++||+++| +++||++|+|++++++|+.|.++|.+||++|+++|+|||++|++|.||++|
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL-~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSL-RRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHH-HHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHH
T ss_conf 8857749996536477787999999999-978995898487667877047999999984847668877553257478999
Q ss_pred HHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCHHH
Q ss_conf 9999997512-896899898321884102344626898999998817994779999999974142379887447-89489
Q 000780 87 LLKILECKKM-KGQIIIPVFYGVSPSDVRHQNGTFGDGFDELKKQFQDKPEMVLKWRDALTETSHLAGHESAKF-RHDAQ 164 (1288)
Q Consensus 87 l~~~~~~~~~-~~~~v~Pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~-~~e~~ 164 (1288)
|++|++|++. ++++|+||||+|+|++||+|+|.||+||++|+.++ ..+++++||.||+++|+++|| +..+ ..|++
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~-~~~~~~~e~~ 187 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGW-HIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBE-EECTTSCHHH
T ss_pred HHHHHHHHHHCCCEEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHH--CHHHHHHHHHHHHHHHCCCCE-ECCCCCCHHH
T ss_conf 9999998875177035779960688997741241999999999861--788999999999998466756-3289998999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999971002
Q 000780 165 LVNKIVEDVLKKLEK 179 (1288)
Q Consensus 165 ~i~~i~~~v~~~l~~ 179 (1288)
+|++|+++|++++++
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999987334
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=345.05 Aligned_cols=385 Identities=17% Similarity=0.186 Sum_probs=268.0
Q ss_pred CCCCCCCEEEEECCCCCCCCC-----CCCCCHHHHCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCC-CCCCCEE
Q ss_conf 588897079981785211134-----799861211035530069998-788888636980899999999998-9888617
Q 000780 554 TNMSNLRLFKFYVPKFYEIEK-----LPSMSTEEQLSYSKVQLPNGL-DYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVE 626 (1288)
Q Consensus 554 ~~m~~Lr~L~l~~~~~~~~~~-----l~~~~~~~~~~~~~~~l~~~~-~~~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~ 626 (1288)
.++++|+.|.+.++.+.+... +..+..++.+......+.... ....++|++|++.++.+...++.+ .+++|++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 227 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCE
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 63889998989798358858715566435898898989788034657845478689898928827887711126999998
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC----CCCEEE
Q ss_conf 7547885325788876556741002233450022376576214998876777299720776874258765----681361
Q 000780 627 LNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQIS----GKVTRL 702 (1288)
Q Consensus 627 L~L~~~~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~L~l~~~~~l~~~p~~~----~~L~~L 702 (1288)
|++++|.+... .|..++.+++|++|++++|...+.+|.. .+++|+.|++++|.-...+|... .+|+.|
T Consensus 228 L~Ls~n~l~~~-------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 228 LDISGNKLSGD-------FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp EECCSSCCCSC-------HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred EECCCCCCCCC-------CCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEE
T ss_conf 97948858781-------6577744888898989888665716724-368789897917855772588888446868899
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCHHHHHCC-CCCEEECCCCC
Q ss_conf 48984443-24753344476119981168676523434-33554454242127657887631233102-34433122646
Q 000780 703 YLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLILLGCLNLEHFPEILEKME-HLKRIYSDRTP 779 (1288)
Q Consensus 703 ~L~~~~l~-~lp~si~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~c~~l~~~p~~l~~l~-~L~~L~l~~~~ 779 (1288)
+++.+.+. .+|..++.+++|+.|++++|...+.+|.. +.++++|++|++++|...+.+|..+.+++ +|+.|++++|.
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCC
T ss_conf 89689677842367755877667789788525737978872488887884847843762309898632277199862787
Q ss_pred CC-CCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 75-56953689--998949972168999877976789941788751035786-589000048997599768998998656
Q 000780 780 IT-ELPSSFEN--LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS-QLPSSVALSNMLRSLDSSHCKGLESFP 855 (1288)
Q Consensus 780 i~-~lp~~l~~--l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~ 855 (1288)
+. .+|..+.. +++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.++
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 47876766653324776189897784654248777568987989895884668546777449988989897881547189
Q ss_pred CCCCCCCCCCCEEEECCCCCC-CCCHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCCCCCC---CC
Q ss_conf 221269999759981179998-78511118899969974599885-37165415999989971578788856984---76
Q 000780 856 RTFLLGLSAMGLLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQSLPEL---PL 930 (1288)
Q Consensus 856 ~~~~~~~~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~ 930 (1288)
.. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. .+
T Consensus 460 ~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 460 QE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HH-HCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 78-82877732999019951375887881699899897539951896876885689999898978943374887770889
Q ss_pred CCCEEEEECCCCCCCCC
Q ss_conf 66589852787877568
Q 000780 931 CLKYLHLIDCKMLQSLP 947 (1288)
Q Consensus 931 ~L~~L~l~~c~~l~~l~ 947 (1288)
+|+.|++++|.....+|
T Consensus 539 ~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp TCCEEECCSSEEESBCC
T ss_pred CCCEEECCCCCCCCCCC
T ss_conf 89989898884688279
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=342.56 Aligned_cols=306 Identities=22% Similarity=0.281 Sum_probs=233.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH---HHCCCCEEEEEEECCCCCCCCCC
Q ss_conf 456889982121136988888520279998169999813875488999999998---62146503996205321256799
Q 000780 182 VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQ---FSHEFEGSCFVSDVRGNSETAGG 258 (1288)
Q Consensus 182 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~ 258 (1288)
..|.....||||+.++++|.++|.... +.+++|+|+|||||||||||+++|++ ....|...+||.++++... ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 194 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SG 194 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCC--HH
T ss_conf 979998641257999999999986135-887779999189888889999986075678862788179999788572--67
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHHHHCC--EEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCH
Q ss_conf 699999998421175631149-----99626899987146--08999656899578999970249889995899990885
Q 000780 259 LEHLQKQMLSTTLSEKLEVAG-----PNIPHFTKERVRRM--KLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDK 331 (1288)
Q Consensus 259 l~~l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~l~~k--k~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIIiTTR~~ 331 (1288)
+......++..+......... ..+...++..+.++ |+||||||||+..+++.+ ++||+||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCH
T ss_conf 999999999986553033347887778999999999735678789999567997788763-------6897899992778
Q ss_pred HHHHH-HCCCCCEEEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 67864-0796011997589-997789999964003999997117999999984206994168988422089898899987
Q 000780 332 RVLEK-FRGEEKKIYRVNG-LEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKV 409 (1288)
Q Consensus 332 ~~~~~-~~~~~~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~ 409 (1288)
.++.. .+ ....++++. |+++||++||...++... +.+.+.+++|+++|+|+||||+++|+.|+.+. ..|+..
T Consensus 268 ~~~~~~~~--~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 268 SVTDSVMG--PKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp TTTTTCCS--CBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred HHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCH---HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHH
T ss_conf 99876348--8437982588887889999998657981---34838899999984997799999999862480-579999
Q ss_pred HHHHHHCCCC--------CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHH--HHHHHHHHH---HHHHHHHHHCC
Q ss_conf 5654311863--------2355897887300389965687863200246898966--899975121---46566786317
Q 000780 410 LHDLNRICES--------EIHDIYDILKISFNKLTPRVKSIFLDIACFFEGEDKD--FVASILDDS---ESDVLDILIDK 476 (1288)
Q Consensus 410 l~~l~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~--~~~~~l~~~---~~~~l~~L~~~ 476 (1288)
+.++...... ....+..+|++||+.|++++|.||+++|+||+++.++ .+..++... +..++++|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNK 421 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99986504430346556446779999998998679999999997281379975189999988589888999999999744
Q ss_pred CCEEEE-CC---EEEECHHHHHHHHHHHHCC
Q ss_conf 570581-99---8980078999999976302
Q 000780 477 SLVSIS-GN---FLNMHDILQEMGRQIVRQE 503 (1288)
Q Consensus 477 sLi~~~-~~---~~~mHdli~~~~~~i~~~e 503 (1288)
|||+.. ++ .|+||+++|+++++...++
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 6338963798118996689999987450678
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=336.97 Aligned_cols=224 Identities=20% Similarity=0.210 Sum_probs=72.3
Q ss_pred EEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHC-CCCCEEECCC
Q ss_conf 36148984443-247533444761199811686765234343355445424212765788763123310-2344331226
Q 000780 700 TRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKM-EHLKRIYSDR 777 (1288)
Q Consensus 700 ~~L~L~~~~l~-~lp~si~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~~p~~l~~l-~~L~~L~l~~ 777 (1288)
++|+++.+.+. .+|..++.+++|+.|++++|.....+|. . .+++|++|++++|...+.+|..+... ++|++|++++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCC
T ss_conf 9897948858781657774488889898988866571672-4-3687898979178557725888884468688998968
Q ss_pred CCCC-CCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCHHHHHHHCCCCCC-CCCCCCCCCC-CCCEEECCCCCCCCC
Q ss_conf 4675-56953689998949972168999877976-789941788751035786-5890000489-975997689989986
Q 000780 778 TPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDN-IGSLEYLYYILAAASAIS-QLPSSVALSN-MLRSLDSSHCKGLES 853 (1288)
Q Consensus 778 ~~i~-~lp~~l~~l~~L~~L~l~~c~~~~~lp~~-l~~l~~L~~L~l~~~~~~-~l~~~~~~l~-~L~~L~L~~~~~~~~ 853 (1288)
|.+. .+|..+..+++|+.|++++|...+.+|.. +..+++|+.|++++|.+. .+|..+..++ +|+.|++++|...+.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 96778423677558776677897885257379788724888878848478437623098986322771998627874787
Q ss_pred CCCCCC-CCCCCCCEEEECCCCCC-CCCHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 562212-69999759981179998-78511118899969974599885-37165415999989971578788856
Q 000780 854 FPRTFL-LGLSAMGLLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQSL 925 (1288)
Q Consensus 854 ~~~~~~-~~~~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l 925 (1288)
.+.... ..++.|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 676665332477618989778465424877756898798989588466854677744998898989788154718
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=308.09 Aligned_cols=298 Identities=18% Similarity=0.158 Sum_probs=215.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHH--HHHCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 998212113698888852027999816999981387548899999999--862146503996205321256799699999
Q 000780 187 SNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFD--QFSHEFEGSCFVSDVRGNSETAGGLEHLQK 264 (1288)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~ 264 (1288)
.+..|||+.++++|.++|... +.+++|+|+||||+||||||+++|+ +++.+|+..++|.++++. .+...+..
T Consensus 127 tk~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~ 200 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLE 200 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCHHHHHH
T ss_conf 787789289999999997435--897189997699966799999999714988748993899982899----99999999
Q ss_pred HHHHHHCCCC---C-CCC--------CCCCHHHHHHHH---HCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 9984211756---3-114--------999626899987---146089996568995789999702498899958999908
Q 000780 265 QMLSTTLSEK---L-EVA--------GPNIPHFTKERV---RRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTR 329 (1288)
Q Consensus 265 ~ll~~l~~~~---~-~~~--------~~~~~~~l~~~l---~~kk~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIIiTTR 329 (1288)
.+...+.... . ..+ ...+...+++.+ .++|+||||||||+.++|+.+ ++||+||||||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTR 273 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH-------CCCEEEEEECC
T ss_conf 99999862272102200134679999999999999999850478879987186818999864-------79829999443
Q ss_pred CHHHHHHHCCCCCEEEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--
Q ss_conf 8567864079601199758------99977899999640039999971179999999842069941689884220898--
Q 000780 330 DKRVLEKFRGEEKKIYRVN------GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-- 401 (1288)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l~~~L~~~-- 401 (1288)
++.++..+. ....|+++ +|+.+||++||+.+. +.. ..++..++ |+|+||||+++|+.|+++
T Consensus 274 d~~Va~~l~--g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHH--HHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHCC--CCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC-----HHHHHHHH---HCCCHHHHHHHHHHHHCCCC
T ss_conf 737998668--97089946865568969999999999974-998-----89999999---69899999999999848899
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH-HHHHHHCCCCCCCCCHH--HHHHHHHH----HHHHHHHHHH
Q ss_conf 98899987565431186323558978873003899656-87863200246898966--89997512----1465667863
Q 000780 402 RKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRV-KSIFLDIACFFEGEDKD--FVASILDD----SESDVLDILI 474 (1288)
Q Consensus 402 ~~~~w~~~l~~l~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~~--~~~~~l~~----~~~~~l~~L~ 474 (1288)
+.++|+.. .. ..+..+|+.||+.|++++ |.||+++|+||+++.++ .+..+|.. .+..++++|+
T Consensus 343 s~eeW~~~-------~~---~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLv 412 (1221)
T 1vt4_I 343 TWDNWKHV-------NC---DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412 (1221)
T ss_dssp SHHHHHHC-------SC---HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHH
T ss_pred CHHHHHCC-------CH---HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 79998669-------86---189999999998488999999999971779999877999998766778899999999999
Q ss_pred CCCCEEEE--CCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 17570581--99898007899999997630265799973224370214355
Q 000780 475 DKSLVSIS--GNFLNMHDILQEMGRQIVRQESEKEPGKRSRLWDPKEISRV 523 (1288)
Q Consensus 475 ~~sLi~~~--~~~~~mHdli~~~~~~i~~~e~~~~~~~~~rl~~~~di~~~ 523 (1288)
++|||+.. ..+|+|||++++++.. ....+..+.|+.+..++..+
T Consensus 413 dRSLLq~d~~~~rYrMHDLllELr~~-----~~e~~alHrRLvd~Y~~~~v 458 (1221)
T 1vt4_I 413 KYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKT 458 (1221)
T ss_dssp TSSSSSBCSSSSEEBCCCHHHHHHHH-----HSCCTTHHHHHHHHHHHHHH
T ss_pred HHCCEEEECCCCEEEEHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 61988986899989860999998568-----98599999999999985485
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=302.93 Aligned_cols=341 Identities=21% Similarity=0.250 Sum_probs=237.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH---HCCCC-EEEEEEECCCCCCCCC
Q ss_conf 4568899821211369888885202799981699998138754889999999986---21465-0399620532125679
Q 000780 182 VSTDSSNGLVGLNSRIEQIKPFLCMDSSDTVQIVGIWGMGGIGKTTLAKAIFDQF---SHEFE-GSCFVSDVRGNSETAG 257 (1288)
Q Consensus 182 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~~~~~~ 257 (1288)
..|.....||||+.++++|.++|.... +..++|+|+||||+||||||++++++. +..|+ .++|+. ++... . .
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~-~ 193 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-K-S 193 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-H-H
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEE-CCCCC-H-H
T ss_conf 999998714052999999999986036-888469997699898899999998355688852899659997-78776-6-8
Q ss_pred CHHHHHHHHHHHHCCCCC--CCCCC---CCHHHHHHHHHC--CEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 969999999842117563--11499---962689998714--60899965689957899997024988999589999088
Q 000780 258 GLEHLQKQMLSTTLSEKL--EVAGP---NIPHFTKERVRR--MKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRD 330 (1288)
Q Consensus 258 ~l~~l~~~ll~~l~~~~~--~~~~~---~~~~~l~~~l~~--kk~LlVLDdv~~~~~~~~l~~~l~~~~~gsrIIiTTR~ 330 (1288)
.+..-...+...++.... ..... .+...+...+.+ +++||||||+|+..+++. ++++++||||||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH-------HCCCCEEEEECCC
T ss_conf 899999999998503556556799889999999999970679986999858998799987-------6379869998988
Q ss_pred HHHHHHHCCCCCEEEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 56786407960119975---899977899999640039999971179999999842069941689884220898988999
Q 000780 331 KRVLEKFRGEEKKIYRV---NGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWG 407 (1288)
Q Consensus 331 ~~~~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~ 407 (1288)
+.++..+. ...|++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. .+|.
T Consensus 267 ~~~~~~~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~ 339 (591)
T 1z6t_A 267 KSVTDSVM---GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWE 339 (591)
T ss_dssp GGGGTTCC---SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHH
T ss_pred CHHHHHCC---CCCEEEECCCCCCHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHH
T ss_conf 17777348---9826861588999899999999871898---310459999999995898379999999984484-3599
Q ss_pred HHHHHHHHCCCC--------CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH--HHHHHHHHHH---HHHHHHHHH
Q ss_conf 875654311863--------235589788730038996568786320024689896--6899975121---465667863
Q 000780 408 KVLHDLNRICES--------EIHDIYDILKISFNKLTPRVKSIFLDIACFFEGEDK--DFVASILDDS---ESDVLDILI 474 (1288)
Q Consensus 408 ~~l~~l~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~~~~~l~~~---~~~~l~~L~ 474 (1288)
..+..+...... ....+..++..||+.|++..|.||+++|+||++..+ +.+..++... +...++.|+
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~ 419 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFV 419 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999988689876511465437899999999986899999999974556799850899999996658899999999998
Q ss_pred CCCCEEEE--C--CEEEECHHHHHHHHHHHHCCC-------------------CCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 17570581--9--989800789999999763026-------------------579997322437021435510377655
Q 000780 475 DKSLVSIS--G--NFLNMHDILQEMGRQIVRQES-------------------EKEPGKRSRLWDPKEISRVLKHNKGTD 531 (1288)
Q Consensus 475 ~~sLi~~~--~--~~~~mHdli~~~~~~i~~~e~-------------------~~~~~~~~rl~~~~di~~~l~~~~~~~ 531 (1288)
++|||... + ..|+||+++|+++++....+- ...++.+.++|..+.+++++..+...
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~- 498 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK- 498 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-
T ss_pred HCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHCCCHH-
T ss_conf 5958688548985679976899999986535689999999999997653778998878987751503899999668778-
Q ss_pred CCCCCCCCCC
Q ss_conf 5213323334
Q 000780 532 AIEGIFLDLS 541 (1288)
Q Consensus 532 ~v~~i~ld~s 541 (1288)
.+..+..++.
T Consensus 499 ~~~~l~~~~~ 508 (591)
T 1z6t_A 499 ELCALMFSLD 508 (591)
T ss_dssp HHHHHHSCHH
T ss_pred HHHHHHHCHH
T ss_conf 9999986879
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=299.35 Aligned_cols=484 Identities=18% Similarity=0.138 Sum_probs=315.8
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-
Q ss_conf 2333443333239000058889707998178521113479986121103553006999878888863698089999999-
Q 000780 537 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL- 615 (1288)
Q Consensus 537 ~ld~s~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~Lr~L~l~~~~l~~l- 615 (1288)
.++++......+.+.+|.++++|++|.+.++.+.. ..+..+..+ ++|++|+++++.+..+
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------------------IHEDTFQSQ-HRLDTLVLTANPLIFMA 97 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------------------ECTTTTTTC-TTCCEEECTTCCCSEEC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCE------------------ECHHHCCCC-CCCCEEECCCCCCCCCC
T ss_conf 89815873471796672567665289788983552------------------485113684-33676448898565458
Q ss_pred CCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9998-988861775478853257888765567410022334500223765762-14998876777299720776874258
Q 000780 616 PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNLHFVCPVTINFSYCVNLIEFP 693 (1288)
Q Consensus 616 p~~~-~~~~L~~L~L~~~~i~~lw~~~~~~~p~~l~~l~~L~~L~L~~~~~l~-~lp~~~~~~~L~~L~l~~~~~l~~~p 693 (1288)
|..+ .+++|++|++++|.+..+ .+..++++++|++|++++|.... ..|....+++|+.|+++++.--...+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred HHHHCCCCCCCEEECCCCCCCCC-------CCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH
T ss_conf 65523442153765212676657-------81012237822389887983411476545687656877765684455496
Q ss_pred C---CCCCCE--EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC--CEEEECCCCCCC---CCCHH
Q ss_conf 7---656813--6148984443247533444761199811686765234343355445--424212765788---76312
Q 000780 694 Q---ISGKVT--RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSL--VTLILLGCLNLE---HFPEI 763 (1288)
Q Consensus 694 ~---~~~~L~--~L~L~~~~l~~lp~si~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L--~~L~L~~c~~l~---~~p~~ 763 (1288)
. ...+++ .|+++.+.+..++.......+|+.|++++|..+... +..+.++ +.+.+..+.... .-+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH---HHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHH---HHHCCCCCHHHEECHHHCCCCCCCCCHHH
T ss_conf 563322156403896679814754866730010013556772667777---65133564422002011026412268667
Q ss_pred HHHCC--CCCEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCCCCCC
Q ss_conf 33102--344331226467556953-68999894997216899987797678994178875103578658-900004899
Q 000780 764 LEKME--HLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL-PSSVALSNM 839 (1288)
Q Consensus 764 l~~l~--~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~ 839 (1288)
+..+. +|+.|+++++.+..++.. +..+++|+.|++++|. +..+|..+..+++|+.|++++|.+..+ +..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred HCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 430320750599944576585577774456678889562882-6777821416546888977168768676023301576
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CHHHCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEE
Q ss_conf 759976899899865622126999975998117999878---51111889996997459988537-16541599998997
Q 000780 840 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIH 915 (1288)
Q Consensus 840 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 915 (1288)
|+.|++++|...+.++...+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ |..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 89888989974443462455066758988788996664567522105678889898989967757888734774577687
Q ss_pred ECCCCCCCCCCC----CCCCCCEEEEECCCCCCCCCC---CCCCCCEEECCCCCCCCC-CC-----CCCCCCCEEECCCC
Q ss_conf 157878885698----476665898527878775688---877865110369878678-89-----98888768964478
Q 000780 916 LEDFNMLQSLPE----LPLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRS-LP-----ELPLCLQYLNLEDC 982 (1288)
Q Consensus 916 L~~c~~l~~lp~----l~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~Ls~~~~l~~-l~-----~~~~~L~~L~L~~c 982 (1288)
+++|......+. ..++|+.|++++|......+. ..++|+.|++++|.+.+. ++ ..+++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 88886777565212417655888989898557768778737887888989899888543454312404887668879999
Q ss_pred CCCCCCCCC---CCCCCEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCCCC-CC--CCCCCCCEECCCCCCC
Q ss_conf 786678887---77664775335657676402210377740456643106899987673-11--0122330010375444
Q 000780 983 NMLRSLPEL---PLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAP-ES--LKSAAICFEFTNCLKL 1056 (1288)
Q Consensus 983 ~~l~~i~~~---~~sL~~L~l~~c~~l~~lp~~l~~L~~L~~l~l~~l~~~~~~l~~l~-~~--l~~~l~~L~~~~C~~L 1056 (1288)
...+..|.. +++|+.|++++|......|..+.+++.| .+++.... +..++ .. -..+++.+++.+++-.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-----l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-----ISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-----CCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCC-----CCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 6670686463265678889898980686896684756651-89876894-----14268766256778788967799861
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=298.37 Aligned_cols=381 Identities=15% Similarity=0.165 Sum_probs=225.3
Q ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCEEEE-ECCCCCCCCCCC------CCCHHH--HCCC---------------CC---
Q ss_conf 32333443333239000058889707998-178521113479------986121--1035---------------53---
Q 000780 536 IFLDLSKIKGINLDPRAFTNMSNLRLFKF-YVPKFYEIEKLP------SMSTEE--QLSY---------------SK--- 588 (1288)
Q Consensus 536 i~ld~s~~~~~~~~~~~f~~m~~Lr~L~l-~~~~~~~~~~l~------~~~~~~--~~~~---------------~~--- 588 (1288)
..++++........+.++.++++|+.|.+ ++|.+.+..... .+.... .... ..
T Consensus 326 ~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp EEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 89987247899948557741555628430125633566642223445441156788877766665420375111567878
Q ss_pred ---CCCCC---CCCCCCCCCCEEEECC--CCCCCCCCCC-CCCCCEEEECCCCCCCCC-----CCCC-----CCCCCCCC
Q ss_conf ---00699---9878888863698089--9999999998-988861775478853257-----8887-----65567410
Q 000780 589 ---VQLPN---GLDYLPKKLRYLHWDT--YPLRTLPSNF-KPKNLVELNLRCSKVEQP-----WEGE-----KACVPSSI 649 (1288)
Q Consensus 589 ---~~l~~---~~~~~~~~Lr~L~l~~--~~l~~lp~~~-~~~~L~~L~L~~~~i~~l-----w~~~-----~~~~p~~l 649 (1288)
...+. ........++.+.+.. +.+..+|..+ .+++|++|+|++|.+... |... .+.+|..+
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HHHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 77650733243222354423120405666761521188756999878979688678874653223322222244587444
Q ss_pred C--CCCCCCEECCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCC--CCCCCC----------CCCEEECCCCCCCCCCCC
Q ss_conf 0--22334500223765762149988-76777299720776874--258765----------681361489844432475
Q 000780 650 Q--NFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLI--EFPQIS----------GKVTRLYLGQSAIEEVPS 714 (1288)
Q Consensus 650 ~--~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~l~~~~~l~--~~p~~~----------~~L~~L~L~~~~l~~lp~ 714 (1288)
+ ++++|+.|+|++|...+.+|..+ ++++|+.|+++++..+. .+|... .+|+.|+++++.+..+|.
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 02559997789871898875273877379998999896898765664617787523301556883199822894776187
Q ss_pred --CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCC-CCEEECCCCCCCCCCCCCCCCC
Q ss_conf --3344476119981168676523434335544542421276578876312331023-4433122646755695368999
Q 000780 715 --SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH-LKRIYSDRTPITELPSSFENLP 791 (1288)
Q Consensus 715 --si~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~-L~~L~l~~~~i~~lp~~l~~l~ 791 (1288)
.++++++|+.|++++|... .+| .++++++|+.|++++|... .+|..+.++++ |+.|++++|.+..+|..+..++
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~ 642 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred HHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 235515898898989799825-621-2247985007987187125-0358775251149899984997874764452255
Q ss_pred C--CCEEEECCCCCCCCCCC---CCC--CCCHHHHHHHCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCC-
Q ss_conf 8--94997216899987797---678--99417887510357865890000-489975997689989986562212699-
Q 000780 792 G--LEVLFVEDCSKLDNLPD---NIG--SLEYLYYILAAASAISQLPSSVA-LSNMLRSLDSSHCKGLESFPRTFLLGL- 862 (1288)
Q Consensus 792 ~--L~~L~l~~c~~~~~lp~---~l~--~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~- 862 (1288)
. |+.|++++|...+.+|. .+. .+++|+.|++++|.+..+|..+. .+++|+.|++++|... .++...+...
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~ 721 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCC
T ss_conf 67778897708847886432000000135797688983199688659788713898899989899688-54967845553
Q ss_pred ------CCCCEEEECCCCCCCCCHHHC--CCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCC
Q ss_conf ------997599811799987851111--8899969974599885371654159999899715787
Q 000780 863 ------SAMGLLHISDYAVREIPQEIA--YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 920 (1288)
Q Consensus 863 ------~~L~~L~L~~~~~~~lp~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 920 (1288)
++|+.|++++|.+..+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|++++|+
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 343214871589888997866527762442798698990899787610566159998899887997
Done!