BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000781
(1288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 56/195 (28%)
Query: 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITV 616
N+ ++ GHTG+VLCL ++E V+++GS D ++R+WD+ +G ++
Sbjct: 161 NTLECKRILTGHTGSVLCL------------QYDERVIITGSSDSTVRVWDVNTGEMLNT 208
Query: 617 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA---LASLETLRVERMFPGHP---- 669
+ HH V + + + ++ +D S+A +AS + + R+ GH
Sbjct: 209 LIHHCEAVLHLRFN--------NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 670 --NYPAKV-----------VWDC------------PRGYIACL-CRDHSRTSDAVD-VLF 702
++ K VW+ RG IACL RD S + D +
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG-IACLQYRDRLVVSGSSDNTIR 319
Query: 703 IWDVKTGARERVLRG 717
+WD++ GA RVL G
Sbjct: 320 LWDIECGACLRVLEG 334
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH + CL + ++VSGS D +IR+WD+ G + V+ H VR I
Sbjct: 294 GHKRGIACLQYR-----------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 49/187 (26%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GHT V C+ H + +VSGS D ++R+WD+ +G + V+ HVA VR
Sbjct: 195 LYGHTSTVRCMHLH-----------EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243
Query: 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV---------- 675
+ + +S DF V + ET GH N +
Sbjct: 244 CVQYDGRR--------VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG 295
Query: 676 -------VWDCPRGY-IACLCRDHSRTS------------DAVDVLFIWDVKTGARERVL 715
VWD G I L S TS +A + IWD+KTG + L
Sbjct: 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 355
Query: 716 RGTASHS 722
+G H
Sbjct: 356 QGPNKHQ 362
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 550 SPGASLKVNSHVSRQ---YFLGHTGAVLCLAAHRMVGTAKGWS---FNEVLVSGSMDCSI 603
S +LKV S V+ + +GHTG V WS + +++SGS D ++
Sbjct: 136 SDDNTLKVWSAVTGKCLRTLVGHTGGV--------------WSSQMRDNIIISGSTDRTL 181
Query: 604 RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-----GEDFSVALASLET 658
++W+ +G I ++ H + VR + L + D L V G+ V + +
Sbjct: 182 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
Query: 659 LRV-----ERMFPGHPNYPAKVVWD-----CPRGYIACLCRDHSRTSDAVDV-------- 700
+R R+ G ++ K VWD C R +S D + V
Sbjct: 242 VRCVQYDGRRVVSGAYDFMVK-VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 701 LFIWDVKTGARERVLRGTAS 720
+ +WDV+TG L G S
Sbjct: 301 IRVWDVETGNCIHTLTGHQS 320
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 28/155 (18%)
Query: 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651
+ L SG++D I I+D+ +G L+ + H P+R + SP S ++ +D +
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD------SQLLVTASDDGYI 230
Query: 652 ALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711
+ ++ + GH ++ V + CP H +S + + +WDV G R
Sbjct: 231 KIYDVQHANLAGTLSGHASWVLNVAF-CPD-------DTHFVSSSSDKSVKVWDV--GTR 280
Query: 712 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTS 746
T H+ FDH + + G NGN S
Sbjct: 281 ------TCVHTFFDH------QDQVWGVKYNGNGS 303
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F+GH V+ + + +++SGS D +I++W + L T++ H+
Sbjct: 101 QRFVGHKSDVMSVDIDKKA---------SMIISGSRDKTIKVWTIKGQCLATLLGHN-DW 150
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
V Q+ + P + S +S G D V +L ++E F GH
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F+GH V+ + + +++SGS D +I++W + L T++ H+
Sbjct: 101 QRFVGHKSDVMSVDIDKKA---------SMIISGSRDKTIKVWTIKGQCLATLLGHN-DW 150
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
V Q+ + P + S +S G D V +L ++E F GH
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F+GH V+ + + +++SGS D +I++W + L T++ H+
Sbjct: 101 QRFVGHKSDVMSVDIDKKA---------SMIISGSRDKTIKVWTIKGQCLATLLGHN-DW 150
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
V Q+ + P + S +S G D V +L ++E F GH
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F+GH V+ + + +++SGS D +I++W + L T++ H+
Sbjct: 101 QRFVGHKSDVMSVDIDKKA---------SMIISGSRDKTIKVWTIKGQCLATLLGHN-DW 150
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
V Q+ + P + S +S G D V +L ++E F GH
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F+GH V+ + + +++SGS D +I++W + L T++ H+
Sbjct: 95 QRFVGHKSDVMSVDIDKKA---------SMIISGSRDKTIKVWTIKGQCLATLLGHN-DW 144
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
V Q+ + P + S +S G D V +L ++E F GH
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 189
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP 631
V+VSG D +++WDL +G L+T + H V + +SP
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 564 QY-FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622
QY FLGHT VL +A N +VSG D ++R+W++ + T+
Sbjct: 102 QYKFLGHTKDVLSVAFS---------PDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHT 152
Query: 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682
+ P + P +S G D V + L T R+ GH NY V P G
Sbjct: 153 DWVSCVRFSPSLDAP---VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT-VSPDG 208
Query: 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709
LC +SD V +WD+ G
Sbjct: 209 ---SLC----ASSDKDGVARLWDLTKG 228
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 515 SMVISESFYAPYAI-----VYGFFSGEIEVIQF-DLFERHNSPGASLKVNSHVSRQYFL- 567
++ I +++Y P + + G + I +QF D + + ++V +++++ L
Sbjct: 98 NIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ 157
Query: 568 --GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GH G V L ++ +LVSGS D ++R+WD+ G V H + VR
Sbjct: 158 LSGHDGGVWALK----------YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 595 VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILS 630
+S SMD +IRIWDL +G L+ + H A V + LS
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 361
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 515 SMVISESFYAPYAI-----VYGFFSGEIEVIQF-DLFERHNSPGASLKVNSHVSRQYFL- 567
++ I +++Y P + + G + I +QF D + + ++V +++++ L
Sbjct: 98 NIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQ 157
Query: 568 --GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
GH G V L ++ +LVSGS D ++R+WD+ G V H + VR
Sbjct: 158 LSGHDGGVWALK----------YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 595 VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILS 630
+S S D +IRIWDL +G L + H A V + LS
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS 361
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GH +V ++ H ++VSGS D ++ +WD+ + ++ H +
Sbjct: 268 GHXASVRTVSGH-----------GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYST 316
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
I +H C +S D ++ + LE + GH
Sbjct: 317 IY-----DHERKRC-ISASXDTTIRIWDLENGELXYTLQGH 351
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 129 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 176
Query: 625 RQI 627
+
Sbjct: 177 SAV 179
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 142
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 143 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 174
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 100
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 101 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 154
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 155 ------VRIWDVKTG---KCLKTLPAHS 173
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 127 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 174
Query: 625 RQI 627
+
Sbjct: 175 SAV 177
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 140
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 141 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 172
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 98
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 99 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 152
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 153 ------VRIWDVKTG---KCLKTLPAHS 171
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 42/144 (29%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F GH VLCL + + G +F VSG D +WD+ SG + H +
Sbjct: 190 QSFHGHGADVLCL---DLAPSETGNTF----VSGGCDKKAMVWDMRSGQCVQAFETHESD 242
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-------------------- 663
V + +P D F S +D A L LR +R
Sbjct: 243 VNSVRY------YPSGDAFASGSDD---ATCRLYDLRADREVAIYSKESIIFGASSVDFS 293
Query: 664 -----MFPGHPNYPAKVVWDCPRG 682
+F G+ +Y VWD +G
Sbjct: 294 LSGRLLFAGYNDYTIN-VWDVLKG 316
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 594 LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653
+++ S D + +WD+ SG L+ H H A V + L+P +T + F+S G D +
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET----GNTFVSGGCDKKAMV 224
Query: 654 ASLETLRVERMFPGHPN 670
+ + + + F H +
Sbjct: 225 WDMRSGQCVQAFETHES 241
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 111 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 625 RQI 627
+
Sbjct: 159 SAV 161
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 124
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 125 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 82
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 83 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 136
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 137 ------VRIWDVKTG---KCLKTLPAHS 155
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 122 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 625 RQI 627
+
Sbjct: 170 SAV 172
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 135
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 136 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 167
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 93
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 94 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 147
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 148 ------VRIWDVKTG---KCLKTLPAHS 166
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 111 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 625 RQI 627
+
Sbjct: 159 SAV 161
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 124
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 125 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 82
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 83 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 136
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 137 ------VRIWDVKTG---KCLKTLPAHS 155
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 111 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 625 RQI 627
+
Sbjct: 159 SAV 161
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 124
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 125 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 82
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 83 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 136
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 137 ------VRIWDVKTG---KCLKTLPAHS 155
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 110 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 625 RQI 627
+
Sbjct: 158 SAV 160
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 123
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 124 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 155
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 81
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 82 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 135
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 136 ------VRIWDVKTG---KCLKTLPAHS 154
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 108 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 625 RQI 627
+
Sbjct: 156 SAV 158
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 121
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 122 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 134 ------VRIWDVKTG---KCLKTLPAHS 152
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 108 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 625 RQI 627
+
Sbjct: 156 SAV 158
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 121
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 122 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 134 ------VRIWDVKTG---KCLKTLPAHS 152
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 121
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + + P H +
Sbjct: 122 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 108 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 625 RQI 627
+
Sbjct: 156 SAV 158
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L + S D I+IW G + H + + S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 80 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 134 ------VRIWDVKTG---KCLKTLPAHS 152
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623
Q F+GH V + + ++SGS D +I++W + L T++ H+
Sbjct: 101 QRFVGHKSDVXSVDIDKKASX---------IISGSRDKTIKVWTIKGQCLATLLGHN-DW 150
Query: 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668
V Q+ + P + S +S G D V +L ++E F GH
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGH 195
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 22/162 (13%)
Query: 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD-LGSGNLIT 615
+ + + + F+GHT VL +A S N +VSGS D +I++W+ LG
Sbjct: 115 LTTGTTTRRFVGHTKDVLSVAFS---------SDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 675
H V + S P + +P +S G D V + +L +++ GH Y V
Sbjct: 166 QDESHSEWVSCVRFS-PNSSNP---IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
P G LC + A+ +WD+ G L G
Sbjct: 222 T-VSPDG---SLCASGGKDGQAM----LWDLNEGKHLYTLDG 255
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 101 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 625 RQI 627
+
Sbjct: 149 SAV 151
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 576 LAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 114
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR- 693
S+ +S D SV + ++T + + P H + + V ++ RD S
Sbjct: 115 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN----------RDGSLI 160
Query: 694 TSDAVDVLF-IWDVKTG 709
S + D L IWD +G
Sbjct: 161 VSSSYDGLCRIWDTASG 177
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 72
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 73 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 126
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 127 ------VRIWDVKTG---KCLKTLPAHS 145
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 104 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 625 RQI 627
+
Sbjct: 152 SAV 154
Score = 33.1 bits (74), Expect = 0.95, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 576 LAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 117
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR- 693
S+ +S D SV + ++T + + P H + + V ++ RD S
Sbjct: 118 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN----------RDGSLI 163
Query: 694 TSDAVDVLF-IWDVKTG 709
S + D L IWD +G
Sbjct: 164 VSSSYDGLCRIWDTASG 180
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 75
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 76 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 129
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 130 ------VRIWDVKTG---KCLKTLPAHS 148
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 627
GHTG + + F + V+GS D SI++WD+ +G + V PV+++
Sbjct: 72 GHTGTIWSIDVD---------CFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRV 121
Query: 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663
S P + FL++ ++ S+ +ER
Sbjct: 122 EFS------PCGNYFLAILDNVMKNPGSINIYEIER 151
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 105 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 625 RQI 627
+
Sbjct: 153 SAV 155
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 576 LAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 118
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR- 693
S+ +S D SV + ++T + + P H + + V ++ RD S
Sbjct: 119 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN----------RDGSLI 164
Query: 694 TSDAVDVLF-IWDVKTG 709
S + D L IWD +G
Sbjct: 165 VSSSYDGLCRIWDTASG 181
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 76
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 130
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 131 ------VRIWDVKTG---KCLKTLPAHS 149
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 105 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 625 RQI 627
+
Sbjct: 153 SAV 155
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 576 LAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 118
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR- 693
S+ +S D SV + ++T + + P H + + V ++ RD S
Sbjct: 119 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN----------RDGSLI 164
Query: 694 TSDAVDVLF-IWDVKTG 709
S + D L IWD +G
Sbjct: 165 VSSSYDGLCRIWDTASG 181
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 76
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 130
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 131 ------VRIWDVKTG---KCLKTLPAHS 149
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 106 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 625 RQI 627
+
Sbjct: 154 SAV 156
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 576 LAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 119
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR- 693
S+ +S D SV + ++T + + P H + + V ++ RD S
Sbjct: 120 ----SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN----------RDGSLI 165
Query: 694 TSDAVDVLF-IWDVKTG 709
S + D L IWD +G
Sbjct: 166 VSSSYDGLCRIWDTASG 182
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 576 LAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 77
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694
S+ +S +D ++ + + + + + GH NY ++ I D S
Sbjct: 78 ----SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 131
Query: 695 SDAVDVLFIWDVKTGARERVLRGTASHS 722
+ IWDVKTG + L+ +HS
Sbjct: 132 ------VRIWDVKTG---KCLKTLPAHS 150
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 22/162 (13%)
Query: 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD-LGSGNLIT 615
+ + + + F+GHT VL +A S N +VSGS D +I++W+ LG
Sbjct: 92 LTTGTTTRRFVGHTKDVLSVAFS---------SDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 675
H V + S P + +P +S G D V + +L +++ GH Y V
Sbjct: 143 QDESHSEWVSCVRFS-PNSSNP---IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717
P G LC + A+ +WD+ G L G
Sbjct: 199 T-VSPDG---SLCASGGKDGQAM----LWDLNEGKHLYTLDG 232
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 108 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 625 RQI 627
+
Sbjct: 156 SAV 158
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 121
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + P H +
Sbjct: 122 ----SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 573 VLCLAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP 631
+ LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691
S+ +S +D ++ + + + + + GH NY ++ I D
Sbjct: 79 D------SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 692 SRTSDAVDVLFIWDVKTGARERVL 715
S + IWDVKTG + L
Sbjct: 133 S--------VRIWDVKTGMCLKTL 148
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFN---EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPV 624
GH+ V C +FN ++VSGS D S+RIWD+ +G + + H PV
Sbjct: 108 GHSNYVFCC------------NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 625 RQI 627
+
Sbjct: 156 SAV 158
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 576 LAAHRMVGTAKGWSFN-EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634
++ H++ + WS + +LVS S D +++IWD+ SG + + H V +P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-- 121
Query: 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670
S+ +S D SV + ++T + P H +
Sbjct: 122 ----SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 573 VLCLAAH-RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP 631
+ LA H + V + K E L S S D I+IW G + H + + S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691
S+ +S +D ++ + + + + + GH NY ++ I D
Sbjct: 79 D------SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 692 SRTSDAVDVLFIWDVKTGARERVL 715
S + IWDVKTG + L
Sbjct: 133 S--------VRIWDVKTGMCLKTL 148
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651
++L S S D +I++WD I MH H V + + P D +S D ++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN------GDHIVSASRDKTI 216
Query: 652 ALASLETLRVERMFPGHPNY 671
+ ++T + F GH +
Sbjct: 217 KMWEVQTGYCVKTFTGHREW 236
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 594 LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653
L+SGS D +I++WD+ +G + + H VR ++ H LS +D ++ +
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF------HSGGKFILSCADDKTLRV 364
Query: 654 ASLETLRVERMFPGHPNY 671
+ R + H ++
Sbjct: 365 WDYKNKRCMKTLNAHEHF 382
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 1104 VQDWISCVGGTSQDAMTS----HIIVAAALAIWYPSL-VKPTLAMLVVQPLIKLVMATNE 1158
V+D + V G + + +T+ + A + W ++ P + + V+PL +LV AT+
Sbjct: 366 VEDLVVLVRGGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKVKVEPLYELVTATDF 425
Query: 1159 KYSSTAAELLAEGMESTWKT--------CIGFEIPRLIG 1189
YSST + + + +E K C G +P L G
Sbjct: 426 AYSSTVRQNMKQALEEFQKEVSSCHCAPCQGNGVPVLKG 464
>pdb|3J20|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 243
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 215 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250
P MDVVS+ E G+HY ++ + +G+L L PIS++
Sbjct: 84 PVGIMDVVSIPE-TGEHYRVLPNRIGKLILHPISED 118
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 545 FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604
+ N+ S NS ++GH VL +A + +E ++SGS D +
Sbjct: 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN---------DEYILSGSKDRGVL 335
Query: 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642
WD SGN + ++ H V + ++ + P + F
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640
+V T S VSGS D I++WDL +++ H A V + SP +
Sbjct: 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK-----DS 183
Query: 641 CFLSVGEDFSVAL 653
FLS ED + L
Sbjct: 184 VFLSCSEDNRILL 196
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 625
+GH G + L + N++L+S S D ++RIW G+GN + H
Sbjct: 243 LIGHHGPISVLEFNDT---------NKLLLSASDDGTLRIWHGGNGNSQNCFYGH----S 289
Query: 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLE--TLRVERMFPGHPNYPAKVVWDCPRGY 683
Q I+S D +S D SV L SL+ TL + G P + ++ D +
Sbjct: 290 QSIVSASWVG---DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA 346
Query: 684 IACL 687
+A +
Sbjct: 347 VAFM 350
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616
R + G+ + C H + W ++ ++S SMD S+R+W L L+ +
Sbjct: 272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLAL 325
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 595 VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653
VSG D S+++WDL ++ + H + V + P + FLS GED + L
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK-----DTIFLSCGEDGRILL 208
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 32/152 (21%)
Query: 552 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS--FNEVLVSGSMDCSIRIWDLG 609
G + +V+ +V GHT VL +A W + V+ SGS DC++ +W++
Sbjct: 65 GKTGRVDKNVP--LVXGHTAPVLDIA----------WXPHNDNVIASGSEDCTVMVWEIP 112
Query: 610 SGNLITVMHHHVAPVRQ-IILSPPQTE-------HPWS-DCFLSVGEDFSVALASLET-L 659
G L V P+R+ +I T+ HP + + LS G D + + + T
Sbjct: 113 DGGL-------VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA 165
Query: 660 RVERMFPG-HPNYPAKVVWDCPRGYIACLCRD 690
V + P HP+ V W I CRD
Sbjct: 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP 631
+L +GS DC +++WDL M H V SP
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 759
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 789 NSGKPSLNTRIGLQRKKQTIKCSCP-YPGIATLSFDLASLMFPYQMHESAA-------KN 840
+ KPS + ++G++ ++ + Y G + D++ +MFPY + S +
Sbjct: 313 KAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYNSDRGVVVAYYSS 372
Query: 841 GDKQENFTTMEH 852
G +QE F ++ H
Sbjct: 373 GKRQEAFESLTH 384
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 885 KSLEECILRFSLSFLHLWNVDRELDKLLITEMKLKRPENFIVASGLQ 931
+ LE C+ ++ L W ++ K+ ++ ++PE+F++A+G+Q
Sbjct: 209 QGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQ 255
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 552 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS--FNEVLVSGSMDCSIRIWDLG 609
G + +V+ +V GHT VL +A W + V+ SGS DC++ +W++
Sbjct: 65 GKTGRVDKNVP--LVCGHTAPVLDIA----------WCPHNDNVIASGSEDCTVMVWEIP 112
Query: 610 SGNLITVMHHHV 621
G L+ + V
Sbjct: 113 DGGLVLPLREPV 124
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQ 626
GHT VL L+ + + + +SGS D ++R+WDL + + H H +
Sbjct: 203 GHTADVLSLSINSLNA--------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254
Query: 627 IILSP 631
+ P
Sbjct: 255 VKFFP 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,603,411
Number of Sequences: 62578
Number of extensions: 1581592
Number of successful extensions: 3284
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3039
Number of HSP's gapped (non-prelim): 257
length of query: 1288
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1178
effective length of database: 8,089,757
effective search space: 9529733746
effective search space used: 9529733746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)