Query 000781
Match_columns 1288
No_of_seqs 520 out of 4709
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 23:39:27 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 9E-39 2E-43 375.0 40.6 541 16-764 62-617 (775)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-35 2.3E-40 326.7 26.4 362 14-705 113-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 1.6E-33 3.4E-38 331.1 40.8 544 22-769 25-580 (775)
4 KOG0306 WD40-repeat-containing 100.0 5.4E-32 1.2E-36 317.5 45.9 570 17-764 66-662 (888)
5 KOG0271 Notchless-like WD40 re 100.0 5.5E-30 1.2E-34 281.9 26.3 335 212-763 114-478 (480)
6 KOG0306 WD40-repeat-containing 100.0 1.2E-27 2.6E-32 281.2 46.2 506 15-709 106-666 (888)
7 KOG0291 WD40-repeat-containing 100.0 2.3E-26 5.1E-31 270.6 49.8 476 20-765 18-507 (893)
8 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-28 1.6E-32 268.9 23.4 129 555-705 330-458 (459)
9 KOG0272 U4/U6 small nuclear ri 100.0 7E-28 1.5E-32 269.1 21.3 224 478-764 234-458 (459)
10 KOG0318 WD40 repeat stress pro 100.0 4.8E-24 1E-28 243.4 51.1 520 14-765 57-601 (603)
11 KOG1408 WD40 repeat protein [F 99.9 7.6E-25 1.6E-29 255.0 39.8 594 5-765 58-712 (1080)
12 KOG0318 WD40 repeat stress pro 99.9 4.7E-24 1E-28 243.5 45.5 404 18-707 192-602 (603)
13 KOG0291 WD40-repeat-containing 99.9 1.4E-23 3.1E-28 247.3 47.9 437 15-717 144-622 (893)
14 KOG0265 U5 snRNP-specific prot 99.9 3.4E-26 7.4E-31 246.6 20.4 239 504-818 42-280 (338)
15 KOG0286 G-protein beta subunit 99.9 3.6E-24 7.9E-29 230.1 31.4 201 504-763 140-342 (343)
16 KOG1539 WD repeat protein [Gen 99.9 3.5E-22 7.6E-27 238.2 45.4 518 27-769 123-651 (910)
17 KOG0263 Transcription initiati 99.9 7.7E-25 1.7E-29 261.4 22.1 210 500-768 442-651 (707)
18 KOG1063 RNA polymerase II elon 99.9 4.7E-22 1E-26 233.3 44.3 566 15-730 53-675 (764)
19 KOG0281 Beta-TrCP (transducin 99.9 7.4E-25 1.6E-29 238.5 15.7 140 528-711 333-481 (499)
20 KOG0279 G protein beta subunit 99.9 1.9E-23 4.1E-28 223.7 24.4 274 481-831 34-310 (315)
21 KOG0273 Beta-transducin family 99.9 1.9E-22 4.1E-27 228.2 29.2 284 216-707 238-523 (524)
22 KOG0276 Vesicle coat complex C 99.9 9.8E-24 2.1E-28 244.1 18.7 227 481-769 31-260 (794)
23 KOG0295 WD40 repeat-containing 99.9 6.7E-23 1.4E-27 225.9 23.3 222 487-764 174-404 (406)
24 KOG0286 G-protein beta subunit 99.9 1.2E-21 2.5E-26 211.0 31.5 161 504-705 181-343 (343)
25 KOG0279 G protein beta subunit 99.9 3.3E-22 7.2E-27 214.2 25.3 215 501-769 7-225 (315)
26 KOG0273 Beta-transducin family 99.9 1.3E-21 2.8E-26 221.5 30.0 290 326-766 231-523 (524)
27 KOG0263 Transcription initiati 99.9 9.8E-23 2.1E-27 243.5 21.5 224 500-767 369-608 (707)
28 KOG0295 WD40 repeat-containing 99.9 4.8E-22 1E-26 219.2 24.7 172 502-706 228-405 (406)
29 KOG0281 Beta-TrCP (transducin 99.9 1.7E-23 3.8E-28 227.9 8.7 221 477-770 209-432 (499)
30 KOG0265 U5 snRNP-specific prot 99.9 7.3E-21 1.6E-25 205.7 28.8 140 528-705 189-336 (338)
31 cd00200 WD40 WD40 domain, foun 99.9 4.4E-20 9.6E-25 203.9 35.8 140 528-705 150-289 (289)
32 KOG0313 Microtubule binding pr 99.9 6E-21 1.3E-25 211.5 26.0 160 504-707 255-418 (423)
33 KOG0285 Pleiotropic regulator 99.9 3.2E-22 7E-27 219.3 15.2 169 560-768 141-309 (460)
34 KOG0276 Vesicle coat complex C 99.9 4.5E-21 9.7E-26 222.2 24.3 190 501-728 89-278 (794)
35 KOG0296 Angio-associated migra 99.9 9.4E-20 2E-24 201.4 32.1 118 568-707 281-398 (399)
36 KOG0315 G-protein beta subunit 99.9 1.6E-19 3.6E-24 190.6 32.3 127 528-678 182-309 (311)
37 PLN00181 protein SPA1-RELATED; 99.9 1.9E-19 4.1E-24 234.2 40.1 140 528-706 633-792 (793)
38 KOG0274 Cdc4 and related F-box 99.9 2.6E-21 5.5E-26 236.3 20.9 227 477-773 220-448 (537)
39 KOG0285 Pleiotropic regulator 99.9 5.8E-21 1.3E-25 209.6 21.4 189 498-728 140-328 (460)
40 KOG0292 Vesicle coat complex C 99.9 4.1E-20 8.8E-25 220.6 29.8 159 16-251 9-167 (1202)
41 KOG0266 WD40 repeat-containing 99.9 1.4E-20 3E-25 229.3 26.4 230 481-767 177-410 (456)
42 KOG0315 G-protein beta subunit 99.9 1.8E-20 4E-25 197.7 22.6 204 477-725 53-306 (311)
43 KOG0284 Polyadenylation factor 99.9 8.7E-22 1.9E-26 219.6 11.0 181 506-729 135-316 (464)
44 KOG0266 WD40 repeat-containing 99.9 4.4E-20 9.6E-25 224.8 24.7 210 502-768 151-366 (456)
45 KOG1539 WD repeat protein [Gen 99.8 2E-17 4.4E-22 198.0 44.4 525 8-766 68-606 (910)
46 KOG0284 Polyadenylation factor 99.8 1.2E-20 2.5E-25 210.6 15.6 216 486-764 161-378 (464)
47 KOG0313 Microtubule binding pr 99.8 1.3E-19 2.9E-24 201.0 22.5 274 430-764 125-416 (423)
48 KOG0316 Conserved WD40 repeat- 99.8 4.4E-20 9.6E-25 193.4 17.7 222 481-768 35-259 (307)
49 KOG0293 WD40 repeat-containing 99.8 1.8E-19 4E-24 200.9 22.9 103 528-658 410-514 (519)
50 KOG0292 Vesicle coat complex C 99.8 4.5E-20 9.8E-25 220.2 19.0 222 482-766 28-280 (1202)
51 KOG0296 Angio-associated migra 99.8 1.2E-18 2.6E-23 192.7 28.3 330 268-765 54-397 (399)
52 KOG1408 WD40 repeat protein [F 99.8 5.7E-18 1.2E-22 198.2 34.1 183 483-708 524-714 (1080)
53 cd00200 WD40 WD40 domain, foun 99.8 9.8E-18 2.1E-22 185.1 34.0 217 485-764 73-289 (289)
54 PTZ00421 coronin; Provisional 99.8 9E-19 1.9E-23 213.6 28.0 219 504-768 70-292 (493)
55 KOG0274 Cdc4 and related F-box 99.8 1.1E-18 2.3E-23 213.4 26.3 218 480-769 266-485 (537)
56 KOG0300 WD40 repeat-containing 99.8 2E-19 4.3E-24 194.4 16.6 250 500-827 139-430 (481)
57 KOG0282 mRNA splicing factor [ 99.8 2.4E-19 5.1E-24 204.3 15.8 162 14-251 212-374 (503)
58 KOG2106 Uncharacterized conser 99.8 2.3E-15 5E-20 172.0 44.3 488 13-765 101-625 (626)
59 PTZ00420 coronin; Provisional 99.8 2.4E-17 5.1E-22 202.3 29.5 235 484-767 53-294 (568)
60 KOG0645 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 176.3 25.2 209 501-764 6-223 (312)
61 PLN00181 protein SPA1-RELATED; 99.8 6.2E-17 1.3E-21 210.7 34.5 190 478-714 548-745 (793)
62 KOG0282 mRNA splicing factor [ 99.8 4E-19 8.8E-24 202.3 12.3 223 481-764 233-503 (503)
63 KOG0275 Conserved WD40 repeat- 99.8 3.4E-19 7.3E-24 192.9 10.6 225 480-763 230-506 (508)
64 KOG1063 RNA polymerase II elon 99.8 4.7E-16 1E-20 183.4 36.7 232 480-768 333-650 (764)
65 KOG0283 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 202.3 23.0 219 503-766 260-532 (712)
66 PTZ00421 coronin; Provisional 99.8 2.9E-17 6.4E-22 200.4 26.7 171 565-769 70-248 (493)
67 KOG0264 Nucleosome remodeling 99.8 7.6E-18 1.6E-22 191.5 19.4 243 507-793 122-376 (422)
68 KOG0275 Conserved WD40 repeat- 99.8 3.6E-19 7.7E-24 192.7 8.0 175 509-717 213-388 (508)
69 KOG0277 Peroxisomal targeting 99.8 5.5E-18 1.2E-22 179.7 16.6 190 527-766 75-265 (311)
70 KOG0277 Peroxisomal targeting 99.8 1.3E-17 2.9E-22 176.8 18.5 230 478-764 76-307 (311)
71 KOG0316 Conserved WD40 repeat- 99.8 2.6E-17 5.6E-22 172.8 20.4 200 502-764 10-211 (307)
72 PTZ00420 coronin; Provisional 99.8 6.9E-17 1.5E-21 198.2 25.7 142 560-724 64-214 (568)
73 KOG0293 WD40 repeat-containing 99.7 4E-17 8.7E-22 182.4 20.0 219 500-766 215-513 (519)
74 KOG0264 Nucleosome remodeling 99.7 3.4E-17 7.4E-22 186.2 19.4 216 503-765 171-403 (422)
75 KOG0973 Histone transcription 99.7 1.6E-16 3.4E-21 196.4 26.3 237 500-765 60-311 (942)
76 KOG0645 WD40 repeat protein [G 99.7 4.8E-16 1.1E-20 166.6 25.9 185 482-707 34-225 (312)
77 KOG0301 Phospholipase A2-activ 99.7 7.5E-17 1.6E-21 190.2 21.5 213 480-766 76-288 (745)
78 KOG1407 WD40 repeat protein [F 99.7 1.1E-15 2.5E-20 162.9 28.2 144 532-707 166-311 (313)
79 KOG0269 WD40 repeat-containing 99.7 1.5E-17 3.3E-22 197.9 13.6 197 523-766 98-296 (839)
80 KOG0301 Phospholipase A2-activ 99.7 5.3E-17 1.1E-21 191.5 17.6 218 481-766 31-249 (745)
81 KOG0308 Conserved WD40 repeat- 99.7 4.7E-17 1E-21 190.5 16.5 224 501-780 65-299 (735)
82 KOG0310 Conserved WD40 repeat- 99.7 9.3E-17 2E-21 183.7 17.2 205 503-766 62-268 (487)
83 KOG0294 WD40 repeat-containing 99.7 1.4E-15 3.1E-20 165.9 25.4 92 8-131 35-126 (362)
84 KOG0305 Anaphase promoting com 99.7 6.4E-16 1.4E-20 183.2 24.7 221 483-766 237-461 (484)
85 KOG0294 WD40 repeat-containing 99.7 2.7E-16 5.8E-21 171.5 19.7 214 502-766 36-281 (362)
86 KOG0267 Microtubule severing p 99.7 7.9E-18 1.7E-22 198.8 8.1 204 505-767 24-227 (825)
87 KOG0308 Conserved WD40 repeat- 99.7 4.9E-16 1.1E-20 182.1 21.8 199 478-709 88-287 (735)
88 KOG0269 WD40 repeat-containing 99.7 4.8E-17 1E-21 193.7 12.4 211 478-727 103-317 (839)
89 KOG1445 Tumor-specific antigen 99.7 1.3E-14 2.8E-19 168.5 29.9 165 518-708 633-799 (1012)
90 KOG0288 WD40 repeat protein Ti 99.7 6.4E-16 1.4E-20 173.4 17.8 233 478-763 190-458 (459)
91 KOG0300 WD40 repeat-containing 99.7 1E-15 2.2E-20 165.9 17.8 229 451-718 143-398 (481)
92 KOG0643 Translation initiation 99.7 5.6E-15 1.2E-19 158.1 22.1 205 505-769 6-223 (327)
93 KOG0270 WD40 repeat-containing 99.7 5.6E-16 1.2E-20 175.5 15.0 206 525-766 192-404 (463)
94 KOG0641 WD40 repeat protein [G 99.7 1.3E-13 2.7E-18 144.0 30.7 209 502-765 129-348 (350)
95 KOG0640 mRNA cleavage stimulat 99.7 1E-15 2.2E-20 165.9 15.2 224 500-767 103-336 (430)
96 KOG0288 WD40 repeat protein Ti 99.7 1.6E-15 3.5E-20 170.2 17.1 122 559-704 331-458 (459)
97 KOG0278 Serine/threonine kinas 99.7 2.4E-15 5.2E-20 159.2 17.1 219 480-764 76-295 (334)
98 KOG0641 WD40 repeat protein [G 99.7 1.4E-14 3E-19 151.0 22.5 209 506-766 86-303 (350)
99 KOG1332 Vesicle coat complex C 99.6 1.8E-15 3.8E-20 160.1 15.1 199 522-765 20-240 (299)
100 KOG0267 Microtubule severing p 99.6 2.3E-16 5E-21 186.5 9.1 185 503-729 64-248 (825)
101 KOG0302 Ribosome Assembly prot 99.6 9.8E-16 2.1E-20 170.2 13.4 172 500-708 202-379 (440)
102 KOG0646 WD40 repeat protein [G 99.6 3.1E-15 6.7E-20 170.5 17.2 209 483-727 101-327 (476)
103 KOG0772 Uncharacterized conser 99.6 3E-14 6.5E-19 163.3 24.5 190 506-732 265-470 (641)
104 KOG0302 Ribosome Assembly prot 99.6 7.7E-15 1.7E-19 163.2 17.4 200 528-766 168-378 (440)
105 KOG0305 Anaphase promoting com 99.6 9.7E-15 2.1E-19 173.3 19.3 197 486-729 198-397 (484)
106 KOG0289 mRNA splicing factor [ 99.6 7.2E-15 1.6E-19 165.7 17.0 178 500-719 252-431 (506)
107 KOG0289 mRNA splicing factor [ 99.6 9.3E-15 2E-19 164.8 17.6 200 511-769 221-422 (506)
108 KOG2048 WD40 repeat protein [G 99.6 1.5E-11 3.3E-16 145.9 45.2 227 18-305 27-272 (691)
109 KOG2106 Uncharacterized conser 99.6 7.4E-12 1.6E-16 143.7 41.0 367 185-729 129-501 (626)
110 KOG0278 Serine/threonine kinas 99.6 2E-14 4.4E-19 152.2 18.7 178 486-711 123-301 (334)
111 KOG0646 WD40 repeat protein [G 99.6 1.9E-14 4.1E-19 164.1 19.7 223 485-769 61-310 (476)
112 KOG1446 Histone H3 (Lys4) meth 99.6 2E-12 4.4E-17 142.2 32.8 129 53-251 4-132 (311)
113 KOG0772 Uncharacterized conser 99.6 6.2E-14 1.4E-18 160.8 21.2 232 478-762 284-532 (641)
114 KOG1036 Mitotic spindle checkp 99.6 5E-13 1.1E-17 146.3 26.9 78 12-123 9-86 (323)
115 KOG1407 WD40 repeat protein [F 99.6 2.3E-14 5.1E-19 153.0 16.0 187 503-729 14-282 (313)
116 KOG0310 Conserved WD40 repeat- 99.6 1.2E-13 2.6E-18 158.5 22.8 202 481-729 86-289 (487)
117 KOG4283 Transcription-coupled 99.6 5.8E-14 1.3E-18 151.7 18.7 232 506-768 40-278 (397)
118 KOG0268 Sof1-like rRNA process 99.6 1.3E-14 2.9E-19 160.6 13.5 242 478-769 82-348 (433)
119 KOG0283 WD40 repeat-containing 99.6 1.4E-13 3.1E-18 167.0 23.6 205 500-767 360-577 (712)
120 KOG0647 mRNA export protein (c 99.6 3.3E-14 7.2E-19 154.6 16.1 185 507-729 25-303 (347)
121 KOG0640 mRNA cleavage stimulat 99.6 2.1E-14 4.5E-19 155.9 14.3 178 501-718 164-346 (430)
122 KOG1332 Vesicle coat complex C 99.6 6.2E-14 1.4E-18 148.6 17.5 182 501-707 94-286 (299)
123 KOG1273 WD40 repeat protein [G 99.6 2E-13 4.3E-18 149.0 21.8 227 19-297 26-268 (405)
124 KOG0973 Histone transcription 99.6 3.7E-14 8.1E-19 175.7 17.8 190 506-725 9-219 (942)
125 KOG0268 Sof1-like rRNA process 99.6 1.4E-14 3.1E-19 160.3 12.0 203 504-766 61-302 (433)
126 KOG1446 Histone H3 (Lys4) meth 99.6 7E-13 1.5E-17 145.8 24.3 223 481-768 32-264 (311)
127 KOG0647 mRNA export protein (c 99.5 1.2E-12 2.5E-17 142.7 24.7 265 12-389 23-294 (347)
128 KOG2048 WD40 repeat protein [G 99.5 1.6E-10 3.4E-15 137.4 44.0 443 99-728 34-526 (691)
129 KOG0643 Translation initiation 99.5 4.4E-13 9.6E-18 143.7 20.3 204 478-729 25-241 (327)
130 KOG2096 WD40 repeat protein [G 99.5 2.2E-12 4.7E-17 141.0 25.1 154 516-705 235-400 (420)
131 KOG0299 U3 snoRNP-associated p 99.5 1.3E-13 2.8E-18 157.1 15.7 166 507-716 200-365 (479)
132 KOG0321 WD40 repeat-containing 99.5 2.5E-13 5.5E-18 159.4 17.4 165 502-707 93-301 (720)
133 KOG0299 U3 snoRNP-associated p 99.5 3.6E-13 7.8E-18 153.6 17.5 215 502-765 135-355 (479)
134 KOG0303 Actin-binding protein 99.5 8.8E-13 1.9E-17 147.7 19.1 174 504-708 76-250 (472)
135 KOG0303 Actin-binding protein 99.5 9.8E-14 2.1E-18 155.1 11.5 135 565-721 76-217 (472)
136 KOG2445 Nuclear pore complex c 99.5 3.7E-12 8E-17 139.1 22.3 208 506-765 10-317 (361)
137 KOG0649 WD40 repeat protein [G 99.5 2.4E-12 5.1E-17 136.4 20.0 190 501-725 54-255 (325)
138 KOG0650 WD40 repeat nucleolar 99.5 4.2E-12 9E-17 148.2 23.4 98 528-654 622-732 (733)
139 KOG1445 Tumor-specific antigen 99.5 1.1E-11 2.4E-16 144.6 26.7 120 570-710 627-753 (1012)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 1.6E-10 3.5E-15 131.3 34.7 126 571-719 157-291 (300)
141 KOG1273 WD40 repeat protein [G 99.5 4.5E-12 9.8E-17 138.5 20.5 177 512-724 26-297 (405)
142 KOG4378 Nuclear protein COP1 [ 99.4 9E-12 1.9E-16 142.5 23.5 203 482-729 98-303 (673)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 4.9E-10 1.1E-14 127.4 37.4 89 574-679 210-300 (300)
144 KOG1963 WD40 repeat protein [G 99.4 1.5E-10 3.3E-15 141.5 34.3 524 21-664 21-590 (792)
145 KOG0270 WD40 repeat-containing 99.4 2.8E-12 6.1E-17 145.8 17.6 166 505-708 239-405 (463)
146 KOG2096 WD40 repeat protein [G 99.4 3.7E-12 8E-17 139.2 16.9 168 563-766 79-308 (420)
147 KOG4283 Transcription-coupled 99.4 5.9E-12 1.3E-16 136.4 17.1 168 506-711 98-280 (397)
148 KOG1274 WD40 repeat protein [G 99.4 6.3E-11 1.4E-15 144.7 26.5 157 510-708 97-263 (933)
149 KOG0642 Cell-cycle nuclear pro 99.4 4E-12 8.7E-17 148.2 15.6 209 478-720 309-574 (577)
150 KOG0642 Cell-cycle nuclear pro 99.4 5.8E-12 1.3E-16 146.9 15.5 212 504-766 289-561 (577)
151 KOG0321 WD40 repeat-containing 99.4 7.9E-11 1.7E-15 138.8 23.8 129 528-681 286-429 (720)
152 KOG1034 Transcriptional repres 99.3 1.5E-11 3.2E-16 135.4 15.3 101 528-657 108-211 (385)
153 KOG1274 WD40 repeat protein [G 99.3 6.1E-11 1.3E-15 144.9 21.7 223 482-768 32-264 (933)
154 KOG2445 Nuclear pore complex c 99.3 9.3E-11 2E-15 128.3 20.5 202 478-707 76-318 (361)
155 KOG0322 G-protein beta subunit 99.3 3.3E-11 7.2E-16 129.3 16.6 121 506-656 202-322 (323)
156 KOG0639 Transducin-like enhanc 99.3 1.4E-11 2.9E-16 141.1 14.4 223 483-764 438-661 (705)
157 KOG0307 Vesicle coat complex C 99.3 8E-12 1.7E-16 155.8 12.7 200 528-770 83-288 (1049)
158 KOG0307 Vesicle coat complex C 99.3 7.2E-12 1.6E-16 156.3 12.0 196 500-732 107-309 (1049)
159 KOG1036 Mitotic spindle checkp 99.3 5.2E-10 1.1E-14 122.9 24.7 180 505-729 90-284 (323)
160 KOG0639 Transducin-like enhanc 99.3 3.7E-11 8.1E-16 137.6 15.7 202 477-725 479-680 (705)
161 KOG4328 WD40 protein [Function 99.3 1.1E-10 2.4E-15 133.4 18.2 195 500-720 225-463 (498)
162 KOG0649 WD40 repeat protein [G 99.3 2E-10 4.2E-15 122.1 18.5 161 528-719 25-198 (325)
163 KOG2055 WD40 repeat protein [G 99.2 8.9E-10 1.9E-14 126.1 23.1 157 510-707 345-512 (514)
164 KOG1034 Transcriptional repres 99.2 2.4E-10 5.2E-15 126.1 17.6 123 569-709 88-213 (385)
165 KOG0650 WD40 repeat nucleolar 99.2 8.8E-10 1.9E-14 129.2 22.7 156 506-704 563-732 (733)
166 KOG2919 Guanine nucleotide-bin 99.2 1E-09 2.2E-14 120.9 20.4 212 480-729 128-350 (406)
167 KOG1009 Chromatin assembly com 99.2 1.6E-10 3.4E-15 130.6 14.2 169 510-710 14-198 (434)
168 KOG4328 WD40 protein [Function 99.2 2.2E-10 4.8E-15 130.9 15.5 213 503-766 180-399 (498)
169 KOG1007 WD repeat protein TSSC 99.2 5.8E-10 1.3E-14 121.1 17.5 144 529-707 187-361 (370)
170 COG2319 FOG: WD40 repeat [Gene 99.2 6.2E-09 1.3E-13 120.5 27.0 198 484-727 133-336 (466)
171 KOG4378 Nuclear protein COP1 [ 99.2 3.2E-10 7E-15 130.0 15.2 194 481-716 53-248 (673)
172 COG2319 FOG: WD40 repeat [Gene 99.1 8.4E-09 1.8E-13 119.4 26.3 159 531-728 130-293 (466)
173 KOG0644 Uncharacterized conser 99.1 3E-11 6.5E-16 145.1 5.0 191 501-729 182-405 (1113)
174 KOG2919 Guanine nucleotide-bin 99.1 7.4E-09 1.6E-13 114.2 22.5 146 510-686 208-357 (406)
175 KOG0290 Conserved WD40 repeat- 99.1 1.1E-09 2.4E-14 119.1 15.6 218 507-768 94-320 (364)
176 KOG1009 Chromatin assembly com 99.1 7.2E-10 1.6E-14 125.4 14.6 232 479-729 30-292 (434)
177 KOG1538 Uncharacterized conser 99.1 2.6E-07 5.6E-12 109.4 35.2 276 12-376 8-293 (1081)
178 KOG2055 WD40 repeat protein [G 99.1 8.9E-09 1.9E-13 118.1 20.9 284 13-377 210-513 (514)
179 KOG0644 Uncharacterized conser 99.0 4.8E-11 1E-15 143.4 0.9 122 559-707 179-300 (1113)
180 KOG0290 Conserved WD40 repeat- 99.0 3E-09 6.4E-14 115.9 14.4 167 507-708 148-319 (364)
181 KOG1517 Guanine nucleotide bin 99.0 3E-08 6.4E-13 122.6 24.4 162 510-710 1209-1384(1387)
182 KOG1007 WD repeat protein TSSC 99.0 8.9E-09 1.9E-13 112.0 17.5 167 508-708 122-290 (370)
183 KOG1188 WD40 repeat protein [G 99.0 4.1E-09 8.9E-14 117.2 14.8 146 528-709 43-198 (376)
184 KOG4227 WD40 repeat protein [G 99.0 3.2E-08 6.9E-13 110.9 21.1 266 14-384 54-330 (609)
185 KOG1587 Cytoplasmic dynein int 99.0 3.9E-08 8.5E-13 120.6 21.8 261 397-708 242-517 (555)
186 KOG1310 WD40 repeat protein [G 98.9 1.7E-09 3.6E-14 125.5 9.2 126 562-708 42-179 (758)
187 KOG1334 WD40 repeat protein [G 98.9 1.1E-08 2.5E-13 117.9 15.8 130 511-660 338-469 (559)
188 KOG2394 WD40 protein DMR-N9 [G 98.9 1.1E-08 2.5E-13 119.0 15.6 150 510-679 220-384 (636)
189 KOG0322 G-protein beta subunit 98.9 3.1E-09 6.8E-14 114.4 9.8 151 528-706 168-322 (323)
190 PF08662 eIF2A: Eukaryotic tra 98.9 5.6E-08 1.2E-12 105.4 19.1 124 569-715 58-186 (194)
191 KOG1188 WD40 repeat protein [G 98.9 1.9E-08 4E-13 112.1 13.8 193 482-715 47-250 (376)
192 KOG1310 WD40 repeat protein [G 98.9 3.8E-09 8.3E-14 122.6 8.0 168 501-707 42-231 (758)
193 KOG0771 Prolactin regulatory e 98.9 2.5E-08 5.5E-13 114.0 14.3 204 20-305 148-353 (398)
194 KOG2394 WD40 protein DMR-N9 [G 98.8 2.1E-08 4.5E-13 116.8 12.8 168 528-728 188-383 (636)
195 KOG0771 Prolactin regulatory e 98.8 5.3E-08 1.2E-12 111.3 14.4 179 513-730 148-335 (398)
196 KOG1524 WD40 repeat-containing 98.8 3.6E-08 7.8E-13 114.4 13.0 147 503-689 98-246 (737)
197 KOG1587 Cytoplasmic dynein int 98.8 1.3E-07 2.8E-12 116.0 18.7 201 483-709 263-474 (555)
198 KOG1272 WD40-repeat-containing 98.7 1.1E-08 2.5E-13 117.3 6.2 161 511-716 172-332 (545)
199 KOG4547 WD40 repeat-containing 98.7 4E-07 8.6E-12 108.1 19.0 157 527-722 72-239 (541)
200 KOG1517 Guanine nucleotide bin 98.7 4.8E-07 1E-11 112.3 20.0 194 478-709 1079-1289(1387)
201 KOG0974 WD-repeat protein WDR6 98.7 1.2E-07 2.7E-12 118.1 15.0 141 527-708 147-289 (967)
202 KOG2110 Uncharacterized conser 98.7 2.7E-05 5.8E-10 88.3 31.8 95 534-658 152-249 (391)
203 KOG1524 WD40 repeat-containing 98.7 5.1E-08 1.1E-12 113.2 10.4 161 528-730 78-238 (737)
204 KOG4227 WD40 repeat protein [G 98.7 2.2E-07 4.8E-12 104.3 14.1 173 503-710 50-228 (609)
205 KOG1538 Uncharacterized conser 98.7 1.2E-06 2.6E-11 103.9 20.8 159 510-708 133-294 (1081)
206 KOG1963 WD40 repeat protein [G 98.6 7.7E-06 1.7E-10 101.1 26.5 84 12-123 201-284 (792)
207 KOG1523 Actin-related protein 98.6 5.9E-07 1.3E-11 99.7 14.7 159 509-706 10-175 (361)
208 KOG0974 WD-repeat protein WDR6 98.6 7.1E-07 1.5E-11 111.6 17.0 142 592-766 146-288 (967)
209 KOG2110 Uncharacterized conser 98.6 2.1E-06 4.6E-11 97.0 18.6 144 528-710 100-251 (391)
210 PRK01742 tolB translocation pr 98.6 4.6E-06 1E-10 101.7 23.2 158 528-728 262-424 (429)
211 KOG1240 Protein kinase contain 98.6 3.3E-06 7.2E-11 106.8 21.9 236 497-766 1036-1334(1431)
212 KOG1272 WD40-repeat-containing 98.6 5.6E-08 1.2E-12 111.7 5.8 175 510-729 210-389 (545)
213 KOG4547 WD40 repeat-containing 98.6 2.6E-06 5.7E-11 101.3 19.7 121 592-728 71-193 (541)
214 KOG1240 Protein kinase contain 98.5 2.9E-06 6.2E-11 107.3 19.7 149 559-729 1037-1248(1431)
215 PRK11028 6-phosphogluconolacto 98.5 0.00014 3.1E-09 85.3 32.8 152 529-711 142-310 (330)
216 KOG1912 WD40 repeat protein [G 98.5 8.2E-05 1.8E-09 90.5 28.8 107 592-713 438-557 (1062)
217 PF08662 eIF2A: Eukaryotic tra 98.5 8.5E-06 1.8E-10 88.5 18.8 137 603-766 39-179 (194)
218 PF02239 Cytochrom_D1: Cytochr 98.4 0.0012 2.5E-08 79.0 37.9 94 557-666 256-356 (369)
219 KOG3881 Uncharacterized conser 98.4 8.9E-06 1.9E-10 92.6 17.2 167 519-714 155-327 (412)
220 KOG2111 Uncharacterized conser 98.4 9.5E-06 2.1E-10 90.3 16.9 176 485-709 75-258 (346)
221 KOG1523 Actin-related protein 98.4 2.9E-06 6.2E-11 94.3 12.7 171 500-709 46-238 (361)
222 KOG1912 WD40 repeat protein [G 98.4 7.6E-05 1.7E-09 90.8 25.1 102 528-661 440-555 (1062)
223 KOG2111 Uncharacterized conser 98.3 0.00014 3.1E-09 81.2 24.6 101 531-659 155-258 (346)
224 PRK01742 tolB translocation pr 98.3 2.1E-05 4.6E-10 95.9 19.5 160 504-713 198-367 (429)
225 KOG2139 WD40 repeat protein [G 98.3 2.8E-05 6E-10 87.7 17.2 184 478-688 113-299 (445)
226 KOG0280 Uncharacterized conser 98.2 1.3E-05 2.7E-10 88.5 13.8 128 528-682 136-266 (339)
227 KOG2321 WD40 repeat protein [G 98.2 1.1E-05 2.4E-10 95.2 14.0 139 557-720 162-315 (703)
228 KOG3881 Uncharacterized conser 98.2 6.3E-05 1.4E-09 85.9 19.2 188 528-766 118-320 (412)
229 KOG1334 WD40 repeat protein [G 98.2 3.6E-06 7.9E-11 97.7 9.5 127 501-657 134-263 (559)
230 PRK11028 6-phosphogluconolacto 98.2 0.0001 2.2E-09 86.5 21.8 157 514-709 84-260 (330)
231 KOG1409 Uncharacterized conser 98.2 2.7E-05 5.8E-10 87.5 14.7 190 481-710 42-273 (404)
232 KOG4190 Uncharacterized conser 98.2 4E-06 8.6E-11 97.6 8.5 201 483-718 700-917 (1034)
233 KOG2139 WD40 repeat protein [G 98.2 4.2E-05 9.1E-10 86.3 16.0 161 528-729 113-290 (445)
234 KOG1409 Uncharacterized conser 98.1 1.4E-05 3E-10 89.7 11.5 103 528-658 168-271 (404)
235 KOG1064 RAVE (regulator of V-A 98.1 1.1E-05 2.4E-10 105.0 10.6 147 528-717 2223-2376(2439)
236 KOG3914 WD repeat protein WDR4 98.0 4.2E-05 9E-10 87.8 13.0 109 592-716 123-232 (390)
237 KOG2321 WD40 repeat protein [G 98.0 0.00073 1.6E-08 80.4 22.5 154 508-689 174-333 (703)
238 PRK05137 tolB translocation pr 98.0 0.0005 1.1E-08 84.1 22.5 131 562-714 193-329 (435)
239 PRK04922 tolB translocation pr 98.0 0.00033 7.2E-09 85.6 20.5 166 506-712 200-373 (433)
240 PRK05137 tolB translocation pr 98.0 0.00052 1.1E-08 83.9 22.3 166 504-710 196-369 (435)
241 PF00400 WD40: WD domain, G-be 97.9 2.1E-05 4.5E-10 61.8 6.1 39 611-655 1-39 (39)
242 PF00400 WD40: WD domain, G-be 97.9 2.7E-05 5.9E-10 61.1 6.5 39 560-607 1-39 (39)
243 PRK03629 tolB translocation pr 97.9 0.00061 1.3E-08 83.2 20.6 142 557-723 274-421 (429)
244 KOG2695 WD40 repeat protein [G 97.9 2.3E-05 4.9E-10 88.0 7.2 126 569-718 251-387 (425)
245 PRK03629 tolB translocation pr 97.9 0.0011 2.4E-08 80.9 22.6 120 571-712 243-368 (429)
246 KOG1064 RAVE (regulator of V-A 97.9 1.8E-05 3.9E-10 103.2 7.1 177 480-717 2225-2408(2439)
247 KOG2695 WD40 repeat protein [G 97.9 3.7E-05 8E-10 86.3 8.2 132 509-667 252-386 (425)
248 PRK02889 tolB translocation pr 97.8 0.00057 1.2E-08 83.4 19.2 166 507-713 193-366 (427)
249 PRK04922 tolB translocation pr 97.8 0.00035 7.6E-09 85.4 17.4 130 562-713 195-330 (433)
250 PF02239 Cytochrom_D1: Cytochr 97.8 0.00029 6.2E-09 84.2 15.5 113 592-718 6-119 (369)
251 KOG4497 Uncharacterized conser 97.8 0.0029 6.3E-08 71.0 20.8 102 572-690 320-423 (447)
252 PRK02889 tolB translocation pr 97.7 0.00074 1.6E-08 82.4 17.8 127 562-712 187-321 (427)
253 KOG3914 WD repeat protein WDR4 97.7 0.00011 2.3E-09 84.5 9.4 88 563-666 144-232 (390)
254 TIGR02800 propeller_TolB tol-p 97.7 0.0024 5.3E-08 77.2 21.1 125 565-711 228-358 (417)
255 COG5354 Uncharacterized protei 97.7 0.048 1E-06 64.9 30.1 121 568-708 272-396 (561)
256 KOG1354 Serine/threonine prote 97.6 0.0021 4.6E-08 72.6 16.8 171 506-711 161-363 (433)
257 TIGR02800 propeller_TolB tol-p 97.6 0.0068 1.5E-07 73.4 23.1 129 563-713 182-316 (417)
258 KOG0280 Uncharacterized conser 97.6 0.0013 2.7E-08 73.2 14.3 118 573-712 124-247 (339)
259 KOG0309 Conserved WD40 repeat- 97.5 0.00048 1E-08 83.6 11.9 159 572-766 69-232 (1081)
260 PRK01029 tolB translocation pr 97.5 0.0084 1.8E-07 73.2 21.7 132 563-715 273-411 (428)
261 KOG1354 Serine/threonine prote 97.4 0.0029 6.3E-08 71.5 14.9 134 562-719 155-314 (433)
262 PRK00178 tolB translocation pr 97.4 0.013 2.7E-07 71.7 21.8 120 570-711 242-367 (430)
263 KOG4190 Uncharacterized conser 97.3 0.00055 1.2E-08 80.4 8.7 198 478-716 750-957 (1034)
264 PRK00178 tolB translocation pr 97.3 0.0049 1.1E-07 75.3 17.6 130 563-714 191-326 (430)
265 KOG0309 Conserved WD40 repeat- 97.3 0.00036 7.7E-09 84.7 7.1 126 562-708 106-233 (1081)
266 KOG2315 Predicted translation 97.3 0.004 8.6E-08 74.5 15.1 124 569-714 269-396 (566)
267 PRK04792 tolB translocation pr 97.3 0.017 3.6E-07 71.1 21.3 118 572-712 263-387 (448)
268 PRK01029 tolB translocation pr 97.2 0.018 3.8E-07 70.5 20.4 126 569-714 229-366 (428)
269 KOG2041 WD40 repeat protein [G 97.2 0.0011 2.4E-08 80.2 9.2 169 510-707 15-186 (1189)
270 KOG2315 Predicted translation 97.2 0.0093 2E-07 71.5 16.5 136 602-765 252-389 (566)
271 KOG2041 WD40 repeat protein [G 97.2 0.076 1.7E-06 65.0 24.1 84 13-123 11-104 (1189)
272 PF10282 Lactonase: Lactonase, 97.1 0.56 1.2E-05 55.7 31.1 125 570-715 191-332 (345)
273 KOG4714 Nucleoporin [Nuclear s 97.1 0.0014 3E-08 71.7 8.0 75 571-658 180-255 (319)
274 PRK04792 tolB translocation pr 97.1 0.011 2.4E-07 72.7 16.8 128 564-713 211-344 (448)
275 KOG1832 HIV-1 Vpr-binding prot 97.0 0.0003 6.5E-09 86.5 2.7 166 504-719 1096-1267(1516)
276 PF10282 Lactonase: Lactonase, 97.0 0.84 1.8E-05 54.2 31.6 209 19-305 39-274 (345)
277 TIGR03300 assembly_YfgL outer 97.0 0.15 3.2E-06 61.1 25.4 110 592-721 242-352 (377)
278 PLN02919 haloacid dehalogenase 97.0 0.079 1.7E-06 71.6 25.0 118 573-713 685-839 (1057)
279 KOG4714 Nucleoporin [Nuclear s 97.0 0.0013 2.8E-08 71.9 6.5 94 602-708 160-255 (319)
280 KOG4532 WD40-like repeat conta 96.9 0.059 1.3E-06 59.6 18.6 146 528-714 131-289 (344)
281 KOG0882 Cyclophilin-related pe 96.9 0.01 2.2E-07 69.3 13.6 215 19-315 12-239 (558)
282 KOG0882 Cyclophilin-related pe 96.9 0.0016 3.5E-08 75.7 7.1 169 508-716 8-240 (558)
283 PF11768 DUF3312: Protein of u 96.9 0.026 5.7E-07 68.6 17.6 91 604-711 239-333 (545)
284 KOG2066 Vacuolar assembly/sort 96.9 0.013 2.9E-07 72.8 14.9 149 527-722 51-202 (846)
285 COG4946 Uncharacterized protei 96.9 0.068 1.5E-06 62.9 19.5 128 567-714 356-484 (668)
286 PLN02919 haloacid dehalogenase 96.8 0.063 1.4E-06 72.6 21.3 118 572-711 741-892 (1057)
287 KOG1832 HIV-1 Vpr-binding prot 96.6 0.0015 3.3E-08 80.6 4.3 151 562-739 1093-1250(1516)
288 KOG1275 PAB-dependent poly(A) 96.6 0.011 2.4E-07 74.1 11.5 138 528-705 190-340 (1118)
289 TIGR03300 assembly_YfgL outer 96.6 2.2 4.7E-05 51.1 30.9 95 592-704 280-376 (377)
290 KOG4532 WD40-like repeat conta 96.5 0.087 1.9E-06 58.3 16.1 145 512-686 161-319 (344)
291 KOG2066 Vacuolar assembly/sort 96.4 0.059 1.3E-06 67.3 15.5 153 528-720 86-248 (846)
292 KOG4497 Uncharacterized conser 96.4 0.008 1.7E-07 67.7 7.3 111 584-712 17-127 (447)
293 COG4946 Uncharacterized protei 96.3 0.16 3.5E-06 59.9 17.8 146 507-688 357-507 (668)
294 KOG1275 PAB-dependent poly(A) 96.3 0.022 4.8E-07 71.6 11.4 143 26-247 185-340 (1118)
295 KOG2114 Vacuolar assembly/sort 96.3 0.35 7.5E-06 61.2 21.4 131 510-671 126-258 (933)
296 KOG2114 Vacuolar assembly/sort 96.3 0.36 7.7E-06 61.1 21.4 129 570-722 125-259 (933)
297 PF11768 DUF3312: Protein of u 96.2 0.016 3.4E-07 70.5 9.5 77 14-124 257-333 (545)
298 TIGR02658 TTQ_MADH_Hv methylam 96.2 0.89 1.9E-05 54.0 23.5 74 24-131 53-147 (352)
299 smart00320 WD40 WD40 repeats. 96.2 0.014 3E-07 43.0 5.7 39 611-655 2-40 (40)
300 smart00320 WD40 WD40 repeats. 96.0 0.018 3.9E-07 42.3 5.9 38 561-607 3-40 (40)
301 COG5170 CDC55 Serine/threonine 96.0 0.019 4.1E-07 64.2 8.0 129 567-719 169-322 (460)
302 PF04762 IKI3: IKI3 family; I 95.9 0.45 9.8E-06 63.5 21.8 166 508-711 74-292 (928)
303 KOG1645 RING-finger-containing 95.9 0.017 3.8E-07 66.8 7.3 94 603-709 175-268 (463)
304 TIGR02658 TTQ_MADH_Hv methylam 95.8 0.41 8.9E-06 56.8 18.6 104 601-718 27-147 (352)
305 PF13360 PQQ_2: PQQ-like domai 95.6 0.3 6.5E-06 54.0 15.8 112 592-719 37-152 (238)
306 PRK04043 tolB translocation pr 95.5 0.62 1.3E-05 56.9 19.0 122 572-715 189-317 (419)
307 PF08450 SGL: SMP-30/Gluconola 95.4 2.2 4.8E-05 47.8 21.8 133 569-727 84-232 (246)
308 PF15492 Nbas_N: Neuroblastoma 95.3 3.7 8.1E-05 46.5 22.6 46 569-623 228-273 (282)
309 PF14783 BBS2_Mid: Ciliary BBS 95.3 0.94 2E-05 44.5 15.6 100 573-690 2-105 (111)
310 PF13360 PQQ_2: PQQ-like domai 95.1 3.8 8.2E-05 45.2 22.6 144 528-714 79-237 (238)
311 PRK04043 tolB translocation pr 95.0 3.1 6.7E-05 50.9 22.9 133 557-711 220-361 (419)
312 KOG1008 Uncharacterized conser 94.8 0.016 3.5E-07 70.3 2.6 165 528-730 73-254 (783)
313 KOG1645 RING-finger-containing 94.3 0.08 1.7E-06 61.5 6.6 85 562-660 185-269 (463)
314 COG2706 3-carboxymuconate cycl 94.1 15 0.00033 42.9 25.5 205 20-305 92-320 (346)
315 KOG2314 Translation initiation 93.8 0.39 8.5E-06 57.9 11.0 112 574-712 214-339 (698)
316 KOG4640 Anaphase-promoting com 93.6 0.26 5.6E-06 60.4 9.4 78 622-714 21-99 (665)
317 PF15492 Nbas_N: Neuroblastoma 93.2 19 0.0004 41.1 23.3 127 573-711 46-192 (282)
318 PF04762 IKI3: IKI3 family; I 93.0 46 0.001 45.0 52.4 95 6-130 62-159 (928)
319 PF07433 DUF1513: Protein of u 92.6 11 0.00024 43.7 20.1 125 564-716 50-256 (305)
320 PF12894 Apc4_WD40: Anaphase-p 92.4 0.33 7.1E-06 40.3 5.5 38 9-46 4-41 (47)
321 KOG1920 IkappaB kinase complex 92.4 6.8 0.00015 52.0 19.7 156 510-706 69-273 (1265)
322 KOG3621 WD40 repeat-containing 92.3 0.53 1.1E-05 58.5 9.5 103 592-708 46-155 (726)
323 KOG2079 Vacuolar assembly/sort 92.3 0.28 6.1E-06 63.3 7.3 74 16-120 130-203 (1206)
324 PF08553 VID27: VID27 cytoplas 91.9 2.3 5E-05 55.3 15.0 131 556-706 510-646 (794)
325 PF14783 BBS2_Mid: Ciliary BBS 91.9 5.1 0.00011 39.5 13.9 107 512-652 2-109 (111)
326 PF08596 Lgl_C: Lethal giant l 91.8 9.9 0.00021 46.1 19.5 194 16-251 86-292 (395)
327 PF08596 Lgl_C: Lethal giant l 91.7 33 0.00072 41.7 23.8 223 511-769 3-293 (395)
328 COG5170 CDC55 Serine/threonine 91.6 0.75 1.6E-05 52.0 8.9 117 570-708 26-202 (460)
329 KOG4640 Anaphase-promoting com 91.6 0.79 1.7E-05 56.5 9.7 93 571-679 21-115 (665)
330 KOG2444 WD40 repeat protein [G 91.0 0.49 1.1E-05 51.8 6.5 102 528-657 73-177 (238)
331 KOG2314 Translation initiation 90.3 4.6 9.9E-05 49.3 14.1 130 571-719 250-393 (698)
332 COG5354 Uncharacterized protei 90.1 4.6 0.0001 48.9 13.9 117 566-710 28-162 (561)
333 KOG3617 WD40 and TPR repeat-co 89.4 0.6 1.3E-05 58.7 6.2 98 592-707 28-131 (1416)
334 PF08450 SGL: SMP-30/Gluconola 88.7 16 0.00034 40.9 16.8 103 569-686 132-242 (246)
335 PRK11138 outer membrane biogen 88.1 12 0.00025 45.4 16.3 106 592-717 257-363 (394)
336 KOG2444 WD40 repeat protein [G 88.0 1.3 2.8E-05 48.7 6.9 73 592-669 71-144 (238)
337 PRK11138 outer membrane biogen 88.0 70 0.0015 38.6 28.5 97 592-706 295-393 (394)
338 KOG1920 IkappaB kinase complex 87.2 10 0.00022 50.4 15.2 115 574-709 199-324 (1265)
339 KOG2079 Vacuolar assembly/sort 87.0 1.5 3.2E-05 57.1 7.7 89 592-686 100-192 (1206)
340 COG2706 3-carboxymuconate cycl 85.2 87 0.0019 36.9 28.5 115 278-416 190-309 (346)
341 KOG1916 Nuclear protein, conta 83.7 0.64 1.4E-05 59.0 2.3 142 566-729 128-292 (1283)
342 PF06433 Me-amine-dh_H: Methyl 83.3 1.1E+02 0.0023 36.4 28.4 109 99-250 44-166 (342)
343 KOG4649 PQQ (pyrrolo-quinoline 83.2 16 0.00034 41.1 12.3 108 592-716 24-132 (354)
344 PRK02888 nitrous-oxide reducta 83.1 29 0.00063 44.1 16.2 93 600-708 295-405 (635)
345 PRK02888 nitrous-oxide reducta 82.5 33 0.00072 43.6 16.4 56 647-710 294-354 (635)
346 KOG2395 Protein involved in va 82.4 11 0.00024 46.1 11.6 131 556-706 362-499 (644)
347 PF08553 VID27: VID27 cytoplas 81.8 14 0.0003 48.4 13.2 124 500-656 515-646 (794)
348 PF02897 Peptidase_S9_N: Proly 81.2 87 0.0019 38.0 19.6 110 584-709 132-262 (414)
349 KOG4649 PQQ (pyrrolo-quinoline 80.6 1.1E+02 0.0024 34.8 19.4 107 527-666 25-132 (354)
350 KOG1008 Uncharacterized conser 80.2 0.79 1.7E-05 56.4 1.3 104 590-707 165-275 (783)
351 KOG3621 WD40 repeat-containing 78.9 8.1 0.00018 48.6 9.3 116 510-658 34-155 (726)
352 PF00930 DPPIV_N: Dipeptidyl p 77.9 5.6 0.00012 47.4 7.6 83 600-690 22-121 (353)
353 PF07433 DUF1513: Protein of u 77.6 33 0.00071 40.0 13.2 91 592-688 18-117 (305)
354 PF11715 Nup160: Nucleoporin N 76.3 17 0.00037 46.0 11.8 30 101-130 229-258 (547)
355 cd00216 PQQ_DH Dehydrogenases 74.6 80 0.0017 39.5 16.9 119 592-716 111-273 (488)
356 PF12894 Apc4_WD40: Anaphase-p 74.1 8.4 0.00018 32.1 5.4 31 621-657 11-41 (47)
357 PF04053 Coatomer_WDAD: Coatom 73.8 68 0.0015 39.7 15.5 95 592-708 80-174 (443)
358 cd00216 PQQ_DH Dehydrogenases 73.3 1.6E+02 0.0034 37.0 18.9 104 599-716 173-328 (488)
359 KOG3617 WD40 and TPR repeat-co 72.5 3.4 7.5E-05 52.3 3.9 71 572-657 61-131 (1416)
360 KOG1916 Nuclear protein, conta 70.0 7 0.00015 50.2 5.8 152 533-712 151-328 (1283)
361 PF12234 Rav1p_C: RAVE protein 69.9 48 0.001 42.5 13.1 100 592-706 42-155 (631)
362 COG0823 TolB Periplasmic compo 68.9 42 0.00091 41.2 12.2 117 584-716 246-367 (425)
363 PF00780 CNH: CNH domain; Int 67.0 2.2E+02 0.0049 32.1 18.4 144 528-715 10-173 (275)
364 PF03178 CPSF_A: CPSF A subuni 66.4 2.6E+02 0.0057 32.6 20.8 136 190-377 62-203 (321)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 65.8 32 0.0007 41.9 10.2 108 8-130 299-408 (415)
366 COG3391 Uncharacterized conser 64.8 1.4E+02 0.0031 36.0 15.6 108 592-713 87-196 (381)
367 COG3391 Uncharacterized conser 61.8 2.2E+02 0.0048 34.4 16.4 122 572-714 117-246 (381)
368 COG0823 TolB Periplasmic compo 61.5 42 0.00091 41.2 10.2 96 601-711 218-318 (425)
369 COG3386 Gluconolactonase [Carb 60.2 1.7E+02 0.0036 34.5 14.4 112 561-687 153-273 (307)
370 PF05096 Glu_cyclase_2: Glutam 58.9 2.3E+02 0.0049 32.6 14.5 119 572-717 46-167 (264)
371 KOG4499 Ca2+-binding protein R 58.0 2.1E+02 0.0045 32.2 13.4 93 623-728 159-262 (310)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 57.2 1.5E+02 0.0033 37.5 14.5 60 649-717 441-500 (527)
373 PF06433 Me-amine-dh_H: Methyl 56.6 29 0.00062 41.0 7.2 60 650-717 270-330 (342)
374 PF07569 Hira: TUP1-like enhan 56.5 63 0.0014 36.0 9.7 61 639-708 22-96 (219)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 55.9 91 0.002 38.2 11.6 96 562-666 299-407 (415)
376 PF04841 Vps16_N: Vps16, N-ter 55.7 4.7E+02 0.01 32.0 19.0 78 640-729 191-269 (410)
377 PF05694 SBP56: 56kDa selenium 54.2 1.1E+02 0.0024 37.4 11.6 99 600-708 221-343 (461)
378 PF11715 Nup160: Nucleoporin N 52.8 45 0.00098 42.2 8.9 43 622-666 215-257 (547)
379 PF14583 Pectate_lyase22: Olig 52.3 4E+02 0.0088 32.3 15.8 178 513-722 33-238 (386)
380 PRK13616 lipoprotein LpqB; Pro 50.6 3.8E+02 0.0083 34.5 16.5 94 573-685 399-512 (591)
381 KOG2395 Protein involved in va 49.8 1.2E+02 0.0026 37.7 10.9 58 592-657 442-500 (644)
382 PF05694 SBP56: 56kDa selenium 48.4 3.3E+02 0.0071 33.6 14.3 46 111-156 221-267 (461)
383 TIGR03074 PQQ_membr_DH membran 48.2 8.2E+02 0.018 32.6 20.5 121 592-717 261-432 (764)
384 PF10313 DUF2415: Uncharacteri 47.3 66 0.0014 26.4 5.8 34 622-658 1-34 (43)
385 PRK13616 lipoprotein LpqB; Pro 47.1 1.4E+02 0.003 38.5 11.8 95 571-686 350-464 (591)
386 PF15390 DUF4613: Domain of un 46.8 2.2E+02 0.0049 35.9 12.7 121 568-707 54-186 (671)
387 KOG4499 Ca2+-binding protein R 45.6 2.2E+02 0.0048 32.0 11.2 91 592-688 171-273 (310)
388 PF03178 CPSF_A: CPSF A subuni 44.8 5.6E+02 0.012 29.8 20.1 112 509-657 88-202 (321)
389 TIGR02276 beta_rpt_yvtn 40-res 44.6 61 0.0013 25.2 5.4 32 679-717 1-32 (42)
390 PF06977 SdiA-regulated: SdiA- 44.3 4.1E+02 0.0089 30.3 13.8 121 564-707 15-147 (248)
391 TIGR03074 PQQ_membr_DH membran 43.8 3.7E+02 0.008 35.8 15.1 124 592-716 195-353 (764)
392 PF14761 HPS3_N: Hermansky-Pud 42.2 2E+02 0.0043 32.0 10.4 101 594-710 31-166 (215)
393 PF04053 Coatomer_WDAD: Coatom 40.7 1.1E+02 0.0023 37.9 9.2 83 592-685 118-211 (443)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 40.6 3.6E+02 0.0078 34.2 14.1 121 592-716 70-198 (527)
395 PF12768 Rax2: Cortical protei 40.4 3.7E+02 0.0081 31.2 12.9 100 600-710 15-126 (281)
396 COG5167 VID27 Protein involved 40.2 1.3E+02 0.0028 37.1 9.2 60 639-707 573-632 (776)
397 PHA02713 hypothetical protein; 37.9 2.3E+02 0.005 36.2 11.9 73 639-719 464-545 (557)
398 PF10168 Nup88: Nuclear pore c 37.3 4.8E+02 0.01 34.5 14.6 71 623-708 86-180 (717)
399 COG3386 Gluconolactonase [Carb 37.3 4.1E+02 0.0089 31.2 12.9 104 610-727 151-262 (307)
400 PF14870 PSII_BNR: Photosynthe 37.1 7.5E+02 0.016 29.0 15.1 104 569-688 143-251 (302)
401 PF10313 DUF2415: Uncharacteri 35.7 77 0.0017 26.1 4.5 30 18-47 2-34 (43)
402 PF14583 Pectate_lyase22: Olig 34.0 2.9E+02 0.0062 33.5 10.8 148 556-716 16-185 (386)
403 COG3490 Uncharacterized protei 33.6 6.4E+02 0.014 29.4 12.7 130 563-714 154-317 (366)
404 PF00930 DPPIV_N: Dipeptidyl p 33.5 92 0.002 37.1 7.0 56 648-713 22-77 (353)
405 PF02897 Peptidase_S9_N: Proly 32.3 2E+02 0.0043 34.8 9.8 89 624-720 126-225 (414)
406 PF07569 Hira: TUP1-like enhan 31.9 2.6E+02 0.0056 31.1 9.7 23 592-614 23-45 (219)
407 KOG4460 Nuclear pore complex, 31.7 4.9E+02 0.011 32.6 12.1 76 623-712 105-203 (741)
408 PRK10115 protease 2; Provision 31.2 1.3E+03 0.029 30.2 17.6 106 584-706 135-254 (686)
409 PF00796 PSI_8: Photosystem I 28.8 23 0.00049 25.5 0.4 14 1219-1232 7-20 (25)
410 KOG3630 Nuclear pore complex, 28.3 1.7E+02 0.0036 39.6 8.0 103 570-688 155-262 (1405)
411 PF14727 PHTB1_N: PTHB1 N-term 27.8 1.2E+03 0.027 28.7 25.5 73 1-74 1-82 (418)
412 PF00780 CNH: CNH domain; Int 27.8 9E+02 0.02 27.1 21.6 147 528-721 108-269 (275)
413 TIGR02276 beta_rpt_yvtn 40-res 27.5 1.9E+02 0.0041 22.3 5.7 28 592-619 5-32 (42)
414 TIGR03052 PS_I_psaI photosyste 27.3 27 0.00059 26.5 0.6 17 1216-1232 6-22 (31)
415 PF02985 HEAT: HEAT repeat; I 25.8 68 0.0015 23.8 2.6 23 1006-1028 2-24 (31)
416 KOG4441 Proteins containing BT 25.2 7.9E+02 0.017 31.5 13.5 180 483-710 306-502 (571)
417 PHA03098 kelch-like protein; P 25.1 6.9E+02 0.015 31.4 13.1 106 592-710 391-514 (534)
418 PHA03098 kelch-like protein; P 25.0 6.9E+02 0.015 31.4 13.0 109 592-710 344-467 (534)
419 PF07676 PD40: WD40-like Beta 24.1 1.9E+02 0.0042 22.2 5.1 29 15-43 7-38 (39)
420 PHA02790 Kelch-like protein; P 24.0 8.1E+02 0.018 30.5 13.2 103 592-710 364-473 (480)
421 CHL00186 psaI photosystem I su 22.5 37 0.00081 26.6 0.6 25 1215-1242 8-32 (36)
422 PF12234 Rav1p_C: RAVE protein 22.3 5.1E+02 0.011 33.6 10.7 73 568-655 70-154 (631)
423 PF08728 CRT10: CRT10; InterP 21.8 4.4E+02 0.0096 34.5 10.1 137 507-656 100-245 (717)
424 PHA02713 hypothetical protein; 21.4 9.2E+02 0.02 30.8 13.1 21 592-612 353-378 (557)
425 PF05096 Glu_cyclase_2: Glutam 20.2 1.4E+03 0.029 26.4 15.9 113 557-688 117-249 (264)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-39 Score=375.01 Aligned_cols=541 Identities=14% Similarity=0.129 Sum_probs=379.2
Q ss_pred CceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeec-cccceEEeEeccccccccCcccccccccccCcc
Q 000781 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1288)
Q Consensus 16 ~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~G-H~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~ 94 (1288)
...|||++++||+++|++.+..+.+++|++.+ .+.+....+ |++||.-++|
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t-----gk~irswKa~He~Pvi~ma~----------------------- 113 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPT-----GKLIRSWKAIHEAPVITMAF----------------------- 113 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEccc-----chHhHhHhhccCCCeEEEEE-----------------------
Confidence 34699999999999999999999999999997 355555566 9999999976
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccc
Q 000781 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1288)
Q Consensus 95 ~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~ 174 (1288)
.+.+..|++|+.||.++|||+..+.|+++.+.+| +....+.+. +...+..+...
T Consensus 114 ----~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g--GvVssl~F~-~~~~~~lL~sg------------------- 167 (775)
T KOG0319|consen 114 ----DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG--GVVSSLLFH-PHWNRWLLASG------------------- 167 (775)
T ss_pred ----cCCCceEEeccccceEEEEEeeCCEEEEEecCCC--ceEEEEEeC-Cccchhheeec-------------------
Confidence 5667999999999999999999999999998762 222223222 22333233333
Q ss_pred cccccccCCCCCCCCceEEEEecCCceE-EEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCcc
Q 000781 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTI-VQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1288)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~i~D~~tl~v-l~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~ 253 (1288)
..++.+++||..+... +.++.. |...+++++|... ...+++++.|.++-||++..-
T Consensus 168 ------------~~D~~v~vwnl~~~~tcl~~~~~---H~S~vtsL~~~~d------~~~~ls~~RDkvi~vwd~~~~-- 224 (775)
T KOG0319|consen 168 ------------ATDGTVRVWNLNDKRTCLHTMIL---HKSAVTSLAFSED------SLELLSVGRDKVIIVWDLVQY-- 224 (775)
T ss_pred ------------CCCceEEEEEcccCchHHHHHHh---hhhheeeeeeccC------CceEEEeccCcEEEEeehhhh--
Confidence 3789999999986543 555555 6777999999864 568999999999999999653
Q ss_pred ccccCCcccccCcccceeEeecCcccCceEEEEecC-----CCEEEEEecCce--EEeecCCCcccceeeeeecceeecC
Q 000781 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC-----GNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEG 326 (1288)
Q Consensus 254 ~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~d-----g~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~ 326 (1288)
+.....|+|+.- ..+.+..+ +..+.+++.++. +|+. ++++.+.+- .
T Consensus 225 ~~l~~lp~ye~~----------------E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~-es~~~~~~~----------~ 277 (775)
T KOG0319|consen 225 KKLKTLPLYESL----------------ESVVRLREELGGKGEYIITAGGSGVVQYWDS-ESGKCVYKQ----------R 277 (775)
T ss_pred hhhheechhhhe----------------eeEEEechhcCCcceEEEEecCCceEEEEec-ccchhhhhh----------c
Confidence 334555666641 22222222 556777766655 5555 333222111 1
Q ss_pred CCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEe
Q 000781 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFI 406 (1288)
Q Consensus 327 ~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~ 406 (1288)
.+..+-...+..++... ++++.+.+..+.+|+.... .-+-.-.++++.+.+++|.
T Consensus 278 ~~~~~e~~~~~~~~~~~----------------~~l~vtaeQnl~l~d~~~l---------~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 278 QSDSEEIDHLLAIESMS----------------QLLLVTAEQNLFLYDEDEL---------TIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred cCCchhhhcceeccccC----------------ceEEEEccceEEEEEcccc---------EEehhhcCCchhheeeeec
Confidence 11111133444442222 6777777788888865542 1122223455666777765
Q ss_pred eccc-eEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccce-----eecCccccCCCCCcccCcccc
Q 000781 407 QMSL-YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD-----WVNNSTFLDENEGSCTGKSDL 480 (1288)
Q Consensus 407 ~~~~-~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~-----W~~~~~~~~~~~g~~v~kl~~ 480 (1288)
-..+ +++ +.+. .|.+++|..... .++ ++.|..+-. |..+. -+.+
T Consensus 333 G~e~~~la-VATN----------s~~lr~y~~~~~------~c~-ii~GH~e~vlSL~~~~~g~------------llat 382 (775)
T KOG0319|consen 333 GPEESHLA-VATN----------SPELRLYTLPTS------YCQ-IIPGHTEAVLSLDVWSSGD------------LLAT 382 (775)
T ss_pred CCccceEE-EEeC----------CCceEEEecCCC------ceE-EEeCchhheeeeeecccCc------------EEEE
Confidence 4333 333 2211 234777743222 233 566643322 22221 2456
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
.+.+..+.+|+..++....-......+|...|.++.+ ....+..+++++.|+++++|.+....... . ...-
T Consensus 383 ~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~---~~~~asffvsvS~D~tlK~W~l~~s~~~~-~-----~~~~ 453 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG---SKLGASFFVSVSQDCTLKLWDLPKSKETA-F-----PIVL 453 (775)
T ss_pred ecCCceEEEEEecCCcchhhhhhhhcccccccceeee---cccCccEEEEecCCceEEEecCCCccccc-c-----ccee
Confidence 7889999999995554433555666899999999766 44445569999999999997765311100 0 0001
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
++..+...|...|+|++++ |+. .+++|||+|++.+||+++....+.++.||+..|.|+.|+|. .+
T Consensus 454 ~~~~t~~aHdKdIN~Vaia-----~nd----kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------dq 518 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIA-----PND----KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------DQ 518 (775)
T ss_pred hhhHHHHhhcccccceEec-----CCC----ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc------cc
Confidence 1223456899999999995 444 89999999999999999999999999999999999999998 89
Q ss_pred EEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCC
Q 000781 641 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1288)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~ 720 (1288)
+++|+|.|+|||||.+.+..|+.+|.||...|..+.|-.+|..|+++|. ||-+++|++++++|++++.+|.+
T Consensus 519 ~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a--------dGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA--------DGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC--------CCcEEEEeccchhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999996443 59999999999999999999999
Q ss_pred ceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 721 ~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
+|..+...+... ...+|. .|+++-.|.
T Consensus 591 rvWaL~~~~~~~-~~~tgg----------------~Dg~i~~wk 617 (775)
T KOG0319|consen 591 RVWALSVSPLLD-MFVTGG----------------GDGRIIFWK 617 (775)
T ss_pred eeEEEeecCccc-eeEecC----------------CCeEEEEee
Confidence 998874433221 223322 388899995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=326.68 Aligned_cols=362 Identities=19% Similarity=0.207 Sum_probs=276.2
Q ss_pred CCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCc
Q 000781 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1288)
Q Consensus 14 ~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~ 93 (1288)
.+...|-|++|+|+|+.||||+.|.++++||+.+ .+|..+..||...|.|++ .
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcva---w------------------- 165 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVA---W------------------- 165 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCC-----CCcceeecCCccEEEEEE---E-------------------
Confidence 3556799999999999999999999999999998 689999999999999994 4
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCC-----CCCceEEEEeeccCCcccccccc
Q 000781 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-----NPRYVCIGCCFIDTNQLSDHHSF 168 (1288)
Q Consensus 94 ~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~-----~~~~~~l~c~g~~~~~~~~~~~~ 168 (1288)
+||++.|+|||.||+|++||..+|+++-+ .++ +.-..|..+.- .+.-..+..++
T Consensus 166 -----sPDgk~iASG~~dg~I~lwdpktg~~~g~-~l~---gH~K~It~Lawep~hl~p~~r~las~s------------ 224 (480)
T KOG0271|consen 166 -----SPDGKKIASGSKDGSIRLWDPKTGQQIGR-ALR---GHKKWITALAWEPLHLVPPCRRLASSS------------ 224 (480)
T ss_pred -----CCCcchhhccccCCeEEEecCCCCCcccc-ccc---CcccceeEEeecccccCCCccceeccc------------
Confidence 89999999999999999999999998744 233 22223333331 11111233333
Q ss_pred cccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeec
Q 000781 169 ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPIS 248 (1288)
Q Consensus 169 ~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l 248 (1288)
.++.|+|||...+..++++.. |..+|+|+.-= .+..|.++|.|++||+|+.
T Consensus 225 -------------------kDg~vrIWd~~~~~~~~~lsg---HT~~VTCvrwG-------G~gliySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 225 -------------------KDGSVRIWDTKLGTCVRTLSG---HTASVTCVRWG-------GEGLIYSGSQDRTIKVWRA 275 (480)
T ss_pred -------------------CCCCEEEEEccCceEEEEecc---CccceEEEEEc-------CCceEEecCCCceEEEEEc
Confidence 789999999999999999999 89999988653 1459999999999999998
Q ss_pred cCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCceEEeecCCCcccceeeeeecceeecCCC
Q 000781 249 KESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGS 328 (1288)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~i~~~l~~~~~~g~~s~~~s~l~~~~~~ 328 (1288)
.+. +.+..+.+|...|..+++++|- ++|. |.|
T Consensus 276 ~dG-----------------~~~r~lkGHahwvN~lalsTdy-----------~LRt-------gaf------------- 307 (480)
T KOG0271|consen 276 LDG-----------------KLCRELKGHAHWVNHLALSTDY-----------VLRT-------GAF------------- 307 (480)
T ss_pred cch-----------------hHHHhhcccchheeeeeccchh-----------hhhc-------ccc-------------
Confidence 763 1233466776777776666642 1111 111
Q ss_pred CCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeec
Q 000781 329 TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQM 408 (1288)
Q Consensus 329 ~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~ 408 (1288)
-+.+. + ++ +.
T Consensus 308 ----------~~t~~----------------~------------~~-~~------------------------------- 317 (480)
T KOG0271|consen 308 ----------DHTGR----------------K------------PK-SF------------------------------- 317 (480)
T ss_pred ----------ccccc----------------c------------CC-Ch-------------------------------
Confidence 00011 0 00 00
Q ss_pred cceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccc
Q 000781 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVP 488 (1288)
Q Consensus 409 ~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~ 488 (1288)
+.+ ++.. ..=| +
T Consensus 318 --------se~--~~~A------l~rY---~------------------------------------------------- 329 (480)
T KOG0271|consen 318 --------SEE--QKKA------LERY---E------------------------------------------------- 329 (480)
T ss_pred --------HHH--HHHH------HHHH---H-------------------------------------------------
Confidence 000 0000 0000 0
Q ss_pred cccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEec
Q 000781 489 RSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG 568 (1288)
Q Consensus 489 lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~g 568 (1288)
.+ ....|.++++|+.|+++++|+ + .++.+++..+.|
T Consensus 330 ----------------------~~--------~~~~~erlVSgsDd~tlflW~--p------------~~~kkpi~rmtg 365 (480)
T KOG0271|consen 330 ----------------------AV--------LKDSGERLVSGSDDFTLFLWN--P------------FKSKKPITRMTG 365 (480)
T ss_pred ----------------------Hh--------hccCcceeEEecCCceEEEec--c------------cccccchhhhhc
Confidence 00 112234499999999999954 2 234558888999
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D 648 (1288)
|..-|+.+.| |||+ .+++|+|-|++|++||-++|+.+.+|++|-++|..++|+.| ..+++|||.|
T Consensus 366 Hq~lVn~V~f-----SPd~----r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------sRLlVS~SkD 430 (480)
T KOG0271|consen 366 HQALVNHVSF-----SPDG----RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------SRLLVSGSKD 430 (480)
T ss_pred hhhheeeEEE-----CCCc----cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------ccEEEEcCCC
Confidence 9999999999 6799 99999999999999999999999999999999999999999 7899999999
Q ss_pred CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
.++++||+++.+....++||.+.|.++.|+|||..+++|+. |..+++|.
T Consensus 431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggk--------dkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGK--------DKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCC--------ceEEEeec
Confidence 99999999999999999999999999999999999985443 58999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=331.08 Aligned_cols=544 Identities=14% Similarity=0.102 Sum_probs=366.7
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcccccccCC
Q 000781 22 TSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLD 101 (1288)
Q Consensus 22 la~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d 101 (1288)
++++++|+.|+|.+.| .|++-|+.+ + .......-..-...|+++.. ++|
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t--~-~~~l~s~~~ed~d~ita~~l---------------------------~~d 73 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVAT--G-SIALPSGSNEDEDEITALAL---------------------------TPD 73 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccC--C-ceecccCCccchhhhheeee---------------------------cCC
Confidence 8999999999998766 567778875 1 11111111234567888843 778
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeEEEeeC-CCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccc
Q 000781 102 NGALISACTDGVLCVWSRSSGHCRRRRKL-PPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDK 180 (1288)
Q Consensus 102 ~~~LvS~s~DG~l~vWdl~~G~c~~~~~l-~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~~~d~ 180 (1288)
+..|++++..+.+++|++.+|+|++..|. | ..|..+....+.. ..+.-.|
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~H---e~Pvi~ma~~~~g--~LlAtgg------------------------ 124 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIH---EAPVITMAFDPTG--TLLATGG------------------------ 124 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhcc---CCCeEEEEEcCCC--ceEEecc------------------------
Confidence 99999999999999999999999988876 4 4565555554433 2333333
Q ss_pred cCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCc
Q 000781 181 EVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNG 260 (1288)
Q Consensus 181 ~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~ 260 (1288)
-++.+.+||...+.+++.+-+ +.+.|+++.|-.. ... ..|+++..|+++++|++....
T Consensus 125 -------aD~~v~VWdi~~~~~th~fkG---~gGvVssl~F~~~--~~~--~lL~sg~~D~~v~vwnl~~~~-------- 182 (775)
T KOG0319|consen 125 -------ADGRVKVWDIKNGYCTHSFKG---HGGVVSSLLFHPH--WNR--WLLASGATDGTVRVWNLNDKR-------- 182 (775)
T ss_pred -------ccceEEEEEeeCCEEEEEecC---CCceEEEEEeCCc--cch--hheeecCCCceEEEEEcccCc--------
Confidence 568999999999999999999 8899999999753 322 478999999999999999631
Q ss_pred ccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEEEEE
Q 000781 261 LCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMF 338 (1288)
Q Consensus 261 l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~f 338 (1288)
..+..+..|...|..+++++|+..++.++.++. +||+.+..+ ..-+ +..+.+-++.+
T Consensus 183 --------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~-l~~l------------p~ye~~E~vv~ 241 (775)
T KOG0319|consen 183 --------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK-LKTL------------PLYESLESVVR 241 (775)
T ss_pred --------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh-hhee------------chhhheeeEEE
Confidence 023456778888999999999999999999988 888733221 1111 11233345555
Q ss_pred eecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeee
Q 000781 339 LERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETV 418 (1288)
Q Consensus 339 l~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~ 418 (1288)
+ ... .+....-+.+.+++|..++|+-..+...++-+.-. .+. ......+.....++.+.
T Consensus 242 l-~~~----------~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e-------~~~~~~~~~~~~~l~vt-- 300 (775)
T KOG0319|consen 242 L-REE----------LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEE-------IDHLLAIESMSQLLLVT-- 300 (775)
T ss_pred e-chh----------cCCcceEEEEecCCceEEEEecccchhhhhhccCC-chh-------hhcceeccccCceEEEE--
Confidence 5 221 11112357777788888888777643333321100 111 11111122222333332
Q ss_pred eccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccccccccCCCCC
Q 000781 419 CFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQA 498 (1288)
Q Consensus 419 ~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~ 498 (1288)
.|+. +-+|+. . .....+-| .|..+-.-+.. +. .++. ..+......+.+++.+.....
T Consensus 301 ---aeQn------l~l~d~--~---~l~i~k~i-vG~ndEI~Dm~-~l--G~e~---~~laVATNs~~lr~y~~~~~~-- 357 (775)
T KOG0319|consen 301 ---AEQN------LFLYDE--D---ELTIVKQI-VGYNDEILDMK-FL--GPEE---SHLAVATNSPELRLYTLPTSY-- 357 (775)
T ss_pred ---ccce------EEEEEc--c---ccEEehhh-cCCchhheeee-ec--CCcc---ceEEEEeCCCceEEEecCCCc--
Confidence 2222 333310 0 00000011 11100000000 00 0000 123344444556666444332
Q ss_pred CCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEE
Q 000781 499 GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 578 (1288)
Q Consensus 499 ~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~ 578 (1288)
.+.+.+|...|.++....+..+ +++|+.|.++++|+++.. .....++....||++.|.++++
T Consensus 358 ---c~ii~GH~e~vlSL~~~~~g~l----lat~sKD~svilWr~~~~-----------~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 358 ---CQIIPGHTEAVLSLDVWSSGDL----LATGSKDKSVILWRLNNN-----------CSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred ---eEEEeCchhheeeeeecccCcE----EEEecCCceEEEEEecCC-----------cchhhhhhhhcccccccceeee
Confidence 2366899999999875555556 999999999999988422 2333366778899999999999
Q ss_pred eecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-----eE----EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCC
Q 000781 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-----LI----TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 579 ~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-----~l----~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
+ ..| ..+|+|+|.|+++++|++...+ .. .+...|...|+|++++|+ ..+||+||.|+
T Consensus 420 ~-----~~~---asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n------dkLiAT~SqDk 485 (775)
T KOG0319|consen 420 S-----KLG---ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN------DKLIATGSQDK 485 (775)
T ss_pred c-----ccC---ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC------CceEEeccccc
Confidence 4 233 4799999999999999997621 11 134579999999999999 78999999999
Q ss_pred cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 650 sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+.+||+++..+.+.++.||...|++|.|+|.++.++|++ + |++|+||.+.++.+++++.||+..|..+.|.+
T Consensus 486 taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S------g--D~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS------G--DKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred ceeeecccCceEEEEeeCCccceEEEEeccccceeEecc------C--CceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 999999999999999999999999999999999999743 3 48999999999999999999999998887764
Q ss_pred CccceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 730 ~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
... . +++...||-+|+|+++.-+
T Consensus 558 ~~~------------q-----liS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 558 NGK------------Q-----LISAGADGLIKLWNIKTNE 580 (775)
T ss_pred CCc------------E-----EEeccCCCcEEEEeccchh
Confidence 222 2 2333349999999987544
No 4
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-32 Score=317.54 Aligned_cols=570 Identities=15% Similarity=0.096 Sum_probs=365.9
Q ss_pred ceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcccc
Q 000781 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1288)
Q Consensus 17 h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~ 96 (1288)
..|||+..+||..+||.|.+||.|+||+..+ ..+..++.||++.||++.|
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s-----~~~~~tfngHK~AVt~l~f------------------------- 115 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES-----EEILITFNGHKAAVTTLKF------------------------- 115 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC-----CceeeeecccccceEEEEE-------------------------
Confidence 3699999999999999999999999999995 3677889999999999966
Q ss_pred cccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccc
Q 000781 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1288)
Q Consensus 97 ~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~ 176 (1288)
+..|.+|+|||.|+.|.|||+.--.-+.+...| -...+...++. .....+. .+
T Consensus 116 --d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH--kd~iT~~~F~~--~~~~lvS-~s-------------------- 168 (888)
T KOG0306|consen 116 --DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH--KDSITQALFLN--GDSFLVS-VS-------------------- 168 (888)
T ss_pred --cccCceEeecCCCccEEEEEeccceeeEEeecc--hHHHhHHhccC--CCeEEEE-ec--------------------
Confidence 556999999999999999999754444444333 11222222221 2222333 33
Q ss_pred cccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccc
Q 000781 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1288)
Q Consensus 177 ~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~ 256 (1288)
.++.|.+||..+..++.+... +.+.+.+|++.. ..+++++.|..++||.+..++ .+
T Consensus 169 -----------KDs~iK~WdL~tqhCf~Thvd---~r~Eiw~l~~~~--------~~lvt~~~dse~~v~~L~~~~--D~ 224 (888)
T KOG0306|consen 169 -----------KDSMIKFWDLETQHCFETHVD---HRGEIWALVLDE--------KLLVTAGTDSELKVWELAFED--DE 224 (888)
T ss_pred -----------cCceEEEEecccceeeeEEec---ccceEEEEEEec--------ceEEEEecCCceEEEEeeccc--cc
Confidence 789999999999999999888 889999999973 388999999999999995432 11
Q ss_pred cCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCccccee----------ee-------
Q 000781 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEI----------CF------- 317 (1288)
Q Consensus 257 ~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~----------s~------- 317 (1288)
...+-+-.-.+...+.. ...+....++....++.+++...++. +|++.........+ .+
T Consensus 225 ~~~~~~~s~~~~G~~~r--qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIR--QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccceeeccceeee--ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 11111111001111111 11111223333444555555555555 66652221110000 00
Q ss_pred -----eecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCC-cccccCCccccC
Q 000781 318 -----VDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMN-EKFDYEPHFEIP 391 (1288)
Q Consensus 318 -----~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~-~~~~~~~l~~i~ 391 (1288)
.+.+.-.+.-..........+.+.+. ..+.++.-.++.+..|.+++.. ..-.+.....+.
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~--------------~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGG--------------TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCC--------------cceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 00000000000011122223331222 1144555778889999998721 111111122222
Q ss_pred cccCCCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccce-eecCccccCCC
Q 000781 392 AVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD-WVNNSTFLDEN 470 (1288)
Q Consensus 392 ~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~-W~~~~~~~~~~ 470 (1288)
. ..++.++..++++..+..+.+.. .+. +++|..+.. +-.+.+..|..-+. +..++
T Consensus 369 ~-~GHR~dVRsl~vS~d~~~~~Sga------~~S------ikiWn~~t~-----kciRTi~~~y~l~~~Fvpgd------ 424 (888)
T KOG0306|consen 369 I-GGHRSDVRSLCVSSDSILLASGA------GES------IKIWNRDTL-----KCIRTITCGYILASKFVPGD------ 424 (888)
T ss_pred e-ccchhheeEEEeecCceeeeecC------CCc------EEEEEccCc-----ceeEEeccccEEEEEecCCC------
Confidence 1 23345556666666544444332 122 788864311 11223333211111 10000
Q ss_pred CCcccCccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCC
Q 000781 471 EGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNS 550 (1288)
Q Consensus 471 ~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~ 550 (1288)
+.+......+.+.+++.... .+.-+...|.+.+.++...+++.. +++|+.|.+|++|+|........
T Consensus 425 -----~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~g----~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 425 -----RYIVLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNKG----FVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred -----ceEEEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCCc----eEEecCCcEEEEEeEEEEeccCc
Confidence 01233344555566666544 344455789999999999999887 99999999999988753322000
Q ss_pred CC-CccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEE
Q 000781 551 PG-ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIIL 629 (1288)
Q Consensus 551 ~~-~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~ 629 (1288)
+. ..-.++ ..++| .-+..|.|+.+ |||| .+|+.+=.|++|+||-+.+-+..-.+-||.-||.|+.+
T Consensus 492 t~~k~lsl~---~~rtL-el~ddvL~v~~-----Spdg----k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 492 TQKKVLSLK---HTRTL-ELEDDVLCVSV-----SPDG----KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred ccceeeeec---cceEE-eccccEEEEEE-----cCCC----cEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 00 000000 11222 23578999999 6899 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 630 sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
+|+ +..++|||.|++|++|-++-|.|-..|.+|.+.|.+|.|-|...++.+++. |+.|+-||.+.-
T Consensus 559 S~D------SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK--------D~kvKqWDg~kF 624 (888)
T KOG0306|consen 559 SPD------SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK--------DGKVKQWDGEKF 624 (888)
T ss_pred cCC------cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC--------cceEEeechhhh
Confidence 999 899999999999999999999999999999999999999998888886444 599999999999
Q ss_pred cEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 710 ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 710 ~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
+.++++.||...|.++...+ +| .++++++- |.++|.|.
T Consensus 625 e~iq~L~~H~~ev~cLav~~-------~G-----~~vvs~sh-----D~sIRlwE 662 (888)
T KOG0306|consen 625 EEIQKLDGHHSEVWCLAVSP-------NG-----SFVVSSSH-----DKSIRLWE 662 (888)
T ss_pred hhheeeccchheeeeeEEcC-------CC-----CeEEeccC-----CceeEeee
Confidence 99999999999995543321 23 35555544 99999996
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.5e-30 Score=281.93 Aligned_cols=335 Identities=20% Similarity=0.151 Sum_probs=247.1
Q ss_pred ccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCC
Q 000781 212 SIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGN 291 (1288)
Q Consensus 212 ~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~ 291 (1288)
|.++|-|+.|.. + ...|++++.|.++|+||+.+++ ++..+.+|...|.+|+++|||+
T Consensus 114 H~e~Vl~~~fsp---~---g~~l~tGsGD~TvR~WD~~TeT-----------------p~~t~KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 114 HGEAVLSVQFSP---T---GSRLVTGSGDTTVRLWDLDTET-----------------PLFTCKGHKNWVLCVAWSPDGK 170 (480)
T ss_pred CCCcEEEEEecC---C---CceEEecCCCceEEeeccCCCC-----------------cceeecCCccEEEEEEECCCcc
Confidence 667788888875 3 4599999999999999999852 4456789999999999999999
Q ss_pred EEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCC
Q 000781 292 IIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGS 369 (1288)
Q Consensus 292 ~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~ 369 (1288)
.++....++. +|+. ++++.+|+- + ..+ ...+.+..|- ... .....++++..+.||.
T Consensus 171 ~iASG~~dg~I~lwdp-ktg~~~g~~-----l---~gH--~K~It~Lawe-p~h----------l~p~~r~las~skDg~ 228 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDP-KTGQQIGRA-----L---RGH--KKWITALAWE-PLH----------LVPPCRRLASSSKDGS 228 (480)
T ss_pred hhhccccCCeEEEecC-CCCCccccc-----c---cCc--ccceeEEeec-ccc----------cCCCccceecccCCCC
Confidence 9999999988 6666 444333332 0 111 1112222221 111 0011123333333333
Q ss_pred EEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCccee
Q 000781 370 AIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCR 449 (1288)
Q Consensus 370 ~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~ 449 (1288)
++||++..
T Consensus 229 vrIWd~~~------------------------------------------------------------------------ 236 (480)
T KOG0271|consen 229 VRIWDTKL------------------------------------------------------------------------ 236 (480)
T ss_pred EEEEEccC------------------------------------------------------------------------
Confidence 33333221
Q ss_pred EEeecCccceeecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEE
Q 000781 450 MVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIV 529 (1288)
Q Consensus 450 ~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv 529 (1288)
. .....+.+|+..|+|+.+-.+.. ++
T Consensus 237 ---------------------------------------------~----~~~~~lsgHT~~VTCvrwGG~gl-----iy 262 (480)
T KOG0271|consen 237 ---------------------------------------------G----TCVRTLSGHTASVTCVRWGGEGL-----IY 262 (480)
T ss_pred ---------------------------------------------c----eEEEEeccCccceEEEEEcCCce-----EE
Confidence 1 22334467889999965544433 89
Q ss_pred EEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc------CCCCCc--------------
Q 000781 530 YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG------TAKGWS-------------- 589 (1288)
Q Consensus 530 ~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~------SpdG~~-------------- 589 (1288)
+|+.|++|++|+ ...|++.+.|+||...|+.++.+-... .|.|++
T Consensus 263 SgS~DrtIkvw~---------------a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 263 SGSQDRTIKVWR---------------ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred ecCCCceEEEEE---------------ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 999999999965 446778899999999999998851110 111211
Q ss_pred -------cCcEEEEEECCCcEEEEeCCC-CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 590 -------FNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 590 -------~~~~L~SGs~D~tI~vWDl~t-g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
..+.|+|||+|+++.+|+... .+++.++.+|...|+.+.|+|+ +.+++|+|-|++||+||.++|+.
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd------~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD------GRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC------ccEEEEeecccceeeeeCCCcch
Confidence 124699999999999999865 4588999999999999999999 89999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeeccee
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVL 741 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~ 741 (1288)
+.+|+||.+.|+.|+|+.|.++|++|+. |.+++|||+++.++...+.||.+.|.++.+.++.......|
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~Sk--------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg--- 470 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSK--------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG--- 470 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCC--------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC---
Confidence 9999999999999999999999996544 48999999999999999999999998888876433222222
Q ss_pred eCcccccCCceeeccCCcEEEE
Q 000781 742 NGNTSVSSLLLPIHEDGTFRQS 763 (1288)
Q Consensus 742 ~w~~~~s~~l~~~~~D~tvr~w 763 (1288)
.|..+|+|
T Consensus 471 --------------kdkv~~lw 478 (480)
T KOG0271|consen 471 --------------KDKVLRLW 478 (480)
T ss_pred --------------CceEEEee
Confidence 28888888
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-27 Score=281.25 Aligned_cols=506 Identities=15% Similarity=0.176 Sum_probs=322.8
Q ss_pred CCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcc
Q 000781 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1288)
Q Consensus 15 p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~ 94 (1288)
+...||++.|..+|..|+|||.|+.|++||+-. ...+..|.||...||..-|
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~-----E~Gl~rL~GHkd~iT~~~F----------------------- 157 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG-----EEGLFRLRGHKDSITQALF----------------------- 157 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEecc-----ceeeEEeecchHHHhHHhc-----------------------
Confidence 455699999999999999999999999999984 4567889999999999854
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccc---------
Q 000781 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDH--------- 165 (1288)
Q Consensus 95 ~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~--------- 165 (1288)
..+.++++|.|.|+.|++||+.+.+|......+ -.-+..+.... ..++.........+...
T Consensus 158 ----~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~-----r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~ 227 (888)
T KOG0306|consen 158 ----LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDH-----RGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKET 227 (888)
T ss_pred ----cCCCeEEEEeccCceEEEEecccceeeeEEecc-----cceEEEEEEec-ceEEEEecCCceEEEEeecccccccc
Confidence 224589999999999999999999998765332 22333333222 11111111000000000
Q ss_pred -ccccc-cccccc------------cccccCCCCCCCCceEEEEecCCc-------------------------eEEEE-
Q 000781 166 -HSFES-VEGDLV------------SEDKEVPMKNPPKCTLVIVDTYGL-------------------------TIVQT- 205 (1288)
Q Consensus 166 -~~~~~-~~g~~~------------~~d~~~~~~~~~~~~I~i~D~~tl-------------------------~vl~~- 205 (1288)
.-+.. .-|... ..++.+.+-.+.+..+-++...+- .+-..
T Consensus 228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence 00000 000000 000010000001111111110000 00000
Q ss_pred -----EeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccC
Q 000781 206 -----VFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEG 280 (1288)
Q Consensus 206 -----~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~ 280 (1288)
.+........+.++.+++. .+. ...++. -.++.+.++.++... +....+..- .-....+|...
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~--~~~-~~~lv~-l~nNtv~~ysl~~s~--~~~p~~~~~------~~i~~~GHR~d 375 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPS--GGT-ENTLVL-LANNTVEWYSLENSG--KTSPEADRT------SNIEIGGHRSD 375 (888)
T ss_pred HHHHHHHHheechhheeEEEEEec--CCc-ceeEEE-eecCceEEEEeccCC--CCCcccccc------ceeeeccchhh
Confidence 0000001223788888865 332 234444 667888888777621 111111111 11246789999
Q ss_pred ceEEEEecCCCEEEEEecCce-EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeecccccccccccccccccce
Q 000781 281 GHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYE 359 (1288)
Q Consensus 281 v~~Vs~s~dg~~i~~v~~~~~-i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~ 359 (1288)
|+.+.+|.++..++....+.- +|.. .+.+.+..+ +. .+..+..|+ .+| +
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~-~t~kciRTi------------~~-~y~l~~~Fv-pgd---------------~ 425 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNR-DTLKCIRTI------------TC-GYILASKFV-PGD---------------R 425 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEc-cCcceeEEe------------cc-ccEEEEEec-CCC---------------c
Confidence 999999999877766655555 5544 333333222 11 277888898 555 2
Q ss_pred eEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEeccc
Q 000781 360 NFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQ 439 (1288)
Q Consensus 360 ~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~ 439 (1288)
.++++...|.+.+|++...+.+-+.++|. .....+.-.+++...+... .+.+ +++|+..-
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd---------gaIWsi~~~pD~~g~vT~s-----aDkt------VkfWdf~l 485 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHD---------GAIWSISLSPDNKGFVTGS-----ADKT------VKFWDFKL 485 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhccc---------cceeeeeecCCCCceEEec-----CCcE------EEEEeEEE
Confidence 78999999999999998743333333222 2222333333333433333 3333 77775211
Q ss_pred CCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeee
Q 000781 440 KHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVIS 519 (1288)
Q Consensus 440 ~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is 519 (1288)
..+.++.+.+.+. +.. ...-.-...|.|+.+.+
T Consensus 486 ~~~~~gt~~k~ls---------------------------------------l~~--------~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 486 VVSVPGTQKKVLS---------------------------------------LKH--------TRTLELEDDVLCVSVSP 518 (888)
T ss_pred EeccCcccceeee---------------------------------------ecc--------ceEEeccccEEEEEEcC
Confidence 1000111111100 000 00011246788988888
Q ss_pred cCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC
Q 000781 520 ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 599 (1288)
Q Consensus 520 ~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~ 599 (1288)
+..+ ++.|--|.++.|+..| +-+..-.|.||.-+|.|+.. |||+ ..++|||.
T Consensus 519 dgk~----LaVsLLdnTVkVyflD---------------tlKFflsLYGHkLPV~smDI-----S~DS----klivTgSA 570 (888)
T KOG0306|consen 519 DGKL----LAVSLLDNTVKVYFLD---------------TLKFFLSLYGHKLPVLSMDI-----SPDS----KLIVTGSA 570 (888)
T ss_pred CCcE----EEEEeccCeEEEEEec---------------ceeeeeeecccccceeEEec-----cCCc----CeEEeccC
Confidence 8888 9999999999997765 44577889999999999999 5788 99999999
Q ss_pred CCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcC
Q 000781 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1288)
Q Consensus 600 D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp 679 (1288)
|++|++|-+.-|.|.+.|.+|.+.|.++.|.|. .+.|.+++.|+.|+-||-+..++++.+.+|...|+|++..|
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred CCceEEeccccchhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 680 ~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
+|.|+++++. |.+||+|....-
T Consensus 645 ~G~~vvs~sh--------D~sIRlwE~tde 666 (888)
T KOG0306|consen 645 NGSFVVSSSH--------DKSIRLWERTDE 666 (888)
T ss_pred CCCeEEeccC--------CceeEeeeccCc
Confidence 9999996443 489999987543
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.3e-26 Score=270.59 Aligned_cols=476 Identities=14% Similarity=0.153 Sum_probs=319.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCccccccc
Q 000781 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1288)
Q Consensus 20 Tala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 99 (1288)
--+.|++||..+++- -...|.++|+.. .+-....+.+...|++++. +
T Consensus 18 Gnl~ft~dG~sviSP-vGNrvsv~dLkn-----N~S~Tl~~e~~~NI~~ial---------------------------S 64 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISP-VGNRVSVFDLKN-----NKSYTLPLETRYNITRIAL---------------------------S 64 (893)
T ss_pred CcEEECCCCCEEEec-cCCEEEEEEccC-----CcceeEEeecCCceEEEEe---------------------------C
Confidence 457899999988874 567899999986 2334456688889999943 8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccccccc
Q 000781 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSED 179 (1288)
Q Consensus 100 ~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~~~d 179 (1288)
|+|.+|++..++|...+-++..-..+++
T Consensus 65 p~g~lllavdE~g~~~lvs~~~r~Vlh~---------------------------------------------------- 92 (893)
T KOG0291|consen 65 PDGTLLLAVDERGRALLVSLLSRSVLHR---------------------------------------------------- 92 (893)
T ss_pred CCceEEEEEcCCCcEEEEecccceeeEE----------------------------------------------------
Confidence 8999999999988776655532111111
Q ss_pred ccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCC
Q 000781 180 KEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGN 259 (1288)
Q Consensus 180 ~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~ 259 (1288)
++ ...++.|+.|++. -.+++.+.++.+.||...+.. +..-
T Consensus 93 ---------------------------f~---fk~~v~~i~fSPn-------g~~fav~~gn~lqiw~~P~~~---~~~~ 132 (893)
T KOG0291|consen 93 ---------------------------FN---FKRGVGAIKFSPN-------GKFFAVGCGNLLQIWHAPGEI---KNEF 132 (893)
T ss_pred ---------------------------Ee---ecCccceEEECCC-------CcEEEEEecceeEEEecCcch---hccc
Confidence 11 2356788888753 257788889999999988752 1111
Q ss_pred cccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEEEE
Q 000781 260 GLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAM 337 (1288)
Q Consensus 260 ~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~ 337 (1288)
+ .........+|...+..|.++.|.+.++..++|.. +|.+-... + + .-..-.....++++.+
T Consensus 133 ~------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k---~-~------~~~~l~gHkd~Vvacf 196 (893)
T KOG0291|consen 133 N------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK---N-L------FTYALNGHKDYVVACF 196 (893)
T ss_pred C------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc---c-c------ceEeccCCCcceEEEE
Confidence 1 12234456788888999999999999998888877 77772222 1 1 1111112235667766
Q ss_pred EeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCC-----ccccCcccCCCC-CeeeEEEeeccce
Q 000781 338 FLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEP-----HFEIPAVSYPSG-VKFSIHFIQMSLY 411 (1288)
Q Consensus 338 fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~-----l~~i~~~~~~~~-~~~~v~f~~~~~~ 411 (1288)
|- .+. ..+.+.+.||.+.+|.....- ...-+. -........... ..-. +
T Consensus 197 F~-~~~---------------~~l~tvskdG~l~~W~~~~~P-~~~~~~~kd~eg~~d~~~~~~~Eek~~~--------~ 251 (893)
T KOG0291|consen 197 FG-ANS---------------LDLYTVSKDGALFVWTCDLRP-PELDKAEKDEEGSDDEEMDEDGEEKTHK--------I 251 (893)
T ss_pred ec-cCc---------------ceEEEEecCceEEEEEecCCC-cccccccccccccccccccccchhhhcc--------e
Confidence 65 333 168889999999999987310 000000 000000000000 0000 1
Q ss_pred EEEeeeeec-cccccccccCeEEEEecccCCCCCCcceeEEeecCccce---eecCccccCCCCCcccCccccccccCcc
Q 000781 412 LLRMETVCF-HVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD---WVNNSTFLDENEGSCTGKSDLTFCQDTV 487 (1288)
Q Consensus 412 L~~v~s~~~-~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~---W~~~~~~~~~~~g~~v~kl~~s~~~s~~ 487 (1288)
.+.....-| ++. + -+ ++.-.. .+...+|+.|-..|. +..|.+
T Consensus 252 ~~~k~~k~~ln~~-~--~k--vtaa~f-------H~~t~~lvvgFssG~f~LyelP~f---------------------- 297 (893)
T KOG0291|consen 252 FWYKTKKHYLNQN-S--SK--VTAAAF-------HKGTNLLVVGFSSGEFGLYELPDF---------------------- 297 (893)
T ss_pred EEEEEEeeeeccc-c--cc--eeeeec-------cCCceEEEEEecCCeeEEEecCCc----------------------
Confidence 111110101 111 0 00 111110 123467777766555 333322
Q ss_pred ccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcC-CcEEEEEecccccCCCCCCccccCCceeEEEE
Q 000781 488 PRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1288)
Q Consensus 488 ~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~D-G~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l 566 (1288)
.+++.+.-....|..+.+-....| ++.|+.. |.+.||.|+ +...+...
T Consensus 298 ------------~lih~LSis~~~I~t~~~N~tGDW----iA~g~~klgQLlVweWq---------------sEsYVlKQ 346 (893)
T KOG0291|consen 298 ------------NLIHSLSISDQKILTVSFNSTGDW----IAFGCSKLGQLLVWEWQ---------------SESYVLKQ 346 (893)
T ss_pred ------------eEEEEeecccceeeEEEecccCCE----EEEcCCccceEEEEEee---------------ccceeeec
Confidence 122222223345666556555666 8888765 899998876 23356677
Q ss_pred ecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE
Q 000781 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1288)
Q Consensus 567 ~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs 646 (1288)
+||..+++|+++ +||| ++++||++|+.|||||..+|-|+.+|..|+..|+.+.|+.. ++.++|.|
T Consensus 347 QgH~~~i~~l~Y-----SpDg----q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~------g~~llssS 411 (893)
T KOG0291|consen 347 QGHSDRITSLAY-----SPDG----QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR------GNVLLSSS 411 (893)
T ss_pred cccccceeeEEE-----CCCC----cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec------CCEEEEee
Confidence 899999999999 6899 99999999999999999999999999999999999999998 89999999
Q ss_pred CCCcEEEEECCCceeEEEecCCC-CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEe
Q 000781 647 EDFSVALASLETLRVERMFPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1288)
Q Consensus 647 ~DgsV~lWdl~t~~~l~~l~gH~-~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~ 725 (1288)
.||+|+.||+...++.++|.... -+..||+.+|.|..+..|..| .-.|+||+++||+++..+.||.++|..+
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d-------~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD-------SFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc-------eEEEEEEEeecCeeeehhcCCCCcceee
Confidence 99999999999999999997653 233699999999999987776 2579999999999999999999999877
Q ss_pred eeecCccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 726 ~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
.|.+. | +.+.+++. |.|||+|++
T Consensus 485 ~f~~~-------~-----~~LaS~SW-----DkTVRiW~i 507 (893)
T KOG0291|consen 485 SFSPD-------G-----SLLASGSW-----DKTVRIWDI 507 (893)
T ss_pred EEccc-------c-----CeEEeccc-----cceEEEEEe
Confidence 66542 2 23444455 999999986
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.3e-28 Score=268.94 Aligned_cols=129 Identities=20% Similarity=0.281 Sum_probs=119.5
Q ss_pred cccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCC
Q 000781 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1288)
Q Consensus 555 ~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~ 634 (1288)
||+.++.++..|.||.+.|..+.| +|+| ..|+|||.|++++|||++..+.+.++.+|.+-|+.|.|.|..
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~f-----sPNG----y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~- 399 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAF-----SPNG----YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE- 399 (459)
T ss_pred eecccCcEEEEecccccceeeEeE-----CCCc----eEEeecCCCCcEEEeeecccccceecccccchhhheEecccC-
Confidence 346677788889999999999999 6799 999999999999999999999999999999999999999953
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
|.+++|++.|++++||.-++..+++.+.||.+.|.++..+|+++++++++. |.++|+|.
T Consensus 400 ----g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~--------DRT~KLW~ 458 (459)
T KOG0272|consen 400 ----GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF--------DRTIKLWR 458 (459)
T ss_pred ----CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc--------Cceeeecc
Confidence 889999999999999999999999999999999999999999999997554 48999995
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7e-28 Score=269.07 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=196.4
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
+.+.+.++++++|+..+. .+...+.+|...|..++|-++..| |.+++.|.+-++ ||+
T Consensus 234 lat~s~Dgtvklw~~~~e----~~l~~l~gH~~RVs~VafHPsG~~----L~TasfD~tWRl---------------WD~ 290 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQE----TPLQDLEGHLARVSRVAFHPSGKF----LGTASFDSTWRL---------------WDL 290 (459)
T ss_pred eeeeccCCceeeeccCCC----cchhhhhcchhhheeeeecCCCce----eeecccccchhh---------------ccc
Confidence 455677888999998876 356778999999999888888888 999999999888 447
Q ss_pred CCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCC
Q 000781 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~ 637 (1288)
++++.+....||...|.+++|+ +|| .+++|||.|..-+|||+++|+++..+.+|..+|.+|.|+|+
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~-----~DG----SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN----- 356 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQ-----PDG----SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN----- 356 (459)
T ss_pred ccchhhHhhcccccccceeEec-----CCC----ceeeccCccchhheeecccCcEEEEecccccceeeEeECCC-----
Confidence 7777788889999999999996 588 99999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcC-CCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp-~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
|..++|||.|++++|||++..+++.++++|.+-|+.|+|.| .|.+|+|++. |++++||..+++++++++.
T Consensus 357 -Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy--------D~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 357 -GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY--------DNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred -ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc--------CcceeeecCCCcccchhhc
Confidence 89999999999999999999999999999999999999999 6778887554 4899999999999999999
Q ss_pred CCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 717 GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
||.+.|+++...+. | ++..+.+. |.|+|.|.
T Consensus 428 GHe~kV~s~Dis~d-------~-----~~i~t~s~-----DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISPD-------S-----QAIATSSF-----DRTIKLWR 458 (459)
T ss_pred CCccceEEEEeccC-------C-----ceEEEecc-----Cceeeecc
Confidence 99999988765431 1 22333333 99999994
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.8e-24 Score=243.42 Aligned_cols=520 Identities=13% Similarity=0.100 Sum_probs=311.1
Q ss_pred CCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCc
Q 000781 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1288)
Q Consensus 14 ~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~ 93 (1288)
-++|.+|...+||.|-|+|+|-..|.|+|||... ..-.....+.--+++|.+| ++
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di---~W------------------- 111 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ---KEHILKNEFQVLAGPIKDI---SW------------------- 111 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccC---cceeeeeeeeecccccccc---ee-------------------
Confidence 4689999999999999999999999999999984 2233334455567889888 44
Q ss_pred ccccccCCCCEEEEEeCC----CeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccc
Q 000781 94 VMGKSSLDNGALISACTD----GVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFE 169 (1288)
Q Consensus 94 ~~~~~s~d~~~LvS~s~D----G~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~ 169 (1288)
+.|+++++..++. |.+.+||-. .-.-....+ ..-..-+.+.+....+.+.|+
T Consensus 112 -----d~ds~RI~avGEGrerfg~~F~~DSG--~SvGei~Gh---Sr~ins~~~KpsRPfRi~T~s-------------- 167 (603)
T KOG0318|consen 112 -----DFDSKRIAAVGEGRERFGHVFLWDSG--NSVGEITGH---SRRINSVDFKPSRPFRIATGS-------------- 167 (603)
T ss_pred -----CCCCcEEEEEecCccceeEEEEecCC--Cccceeecc---ceeEeeeeccCCCceEEEecc--------------
Confidence 7788999888753 566778764 332222222 111111222233333333333
Q ss_pred ccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeecc
Q 000781 170 SVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISK 249 (1288)
Q Consensus 170 ~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~ 249 (1288)
++..|.+++--=.+--.++-. |..-|.|+-+.. | +..+++.+.||.+.+++=+
T Consensus 168 ------------------dDn~v~ffeGPPFKFk~s~r~---HskFV~~VRysP---D---G~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 168 ------------------DDNTVAFFEGPPFKFKSSFRE---HSKFVNCVRYSP---D---GSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred ------------------CCCeEEEeeCCCeeeeecccc---cccceeeEEECC---C---CCeEEEecCCccEEEEcCC
Confidence 455666654321111112222 334477776664 3 4589999999999888755
Q ss_pred CCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCC
Q 000781 250 ESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGG 327 (1288)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~ 327 (1288)
+ ++-+.+. ....+|.+++.+++++||++++++++.+.. ||++ ...+++.++.+ ..
T Consensus 221 t-------ge~vg~l-------~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV-s~~slv~t~~~--------~~ 277 (603)
T KOG0318|consen 221 T-------GEKVGEL-------EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV-STNSLVSTWPM--------GS 277 (603)
T ss_pred C-------ccEEEEe-------cCCCCccccEEEEEECCCCceEEEecCCceEEEEEe-eccceEEEeec--------CC
Confidence 4 3333332 224689999999999999999999999988 9998 44455555421 11
Q ss_pred CCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEee
Q 000781 328 STNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQ 407 (1288)
Q Consensus 328 ~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~ 407 (1288)
.-....+|.+|. .| .+++-+.+|.+..++..... ++.....+.
T Consensus 278 ~v~dqqvG~lWq--kd----------------~lItVSl~G~in~ln~~d~~----------~~~~i~GHn--------- 320 (603)
T KOG0318|consen 278 TVEDQQVGCLWQ--KD----------------HLITVSLSGTINYLNPSDPS----------VLKVISGHN--------- 320 (603)
T ss_pred chhceEEEEEEe--CC----------------eEEEEEcCcEEEEecccCCC----------hhheecccc---------
Confidence 112345677765 45 78888999988888766521 111111111
Q ss_pred ccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccce---eecCccccCC----CCCccc-----
Q 000781 408 MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD---WVNNSTFLDE----NEGSCT----- 475 (1288)
Q Consensus 408 ~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~---W~~~~~~~~~----~~g~~v----- 475 (1288)
.. |+...+.. ..++|++|+.+|. |......+.. .+.+.+
T Consensus 321 ----------------K~------ITaLtv~~-------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 321 ----------------KS------ITALTVSP-------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred ----------------cc------eeEEEEcC-------CCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 11 22111111 1245666666665 6665432111 111100
Q ss_pred ---CccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000781 476 ---GKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1288)
Q Consensus 476 ---~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~ 552 (1288)
+.+.+...+..++.-+.....-.......+.. ++. +++..++... ++..+ ++.|.+..
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~--QP~-~lav~~d~~~----avv~~-~~~iv~l~----------- 432 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS--QPK-GLAVLSDGGT----AVVAC-ISDIVLLQ----------- 432 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccceeecCC--Cce-eEEEcCCCCE----EEEEe-cCcEEEEe-----------
Confidence 01222223333333322221110011001100 011 1111222111 22222 22233311
Q ss_pred CccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCce--EEEEeccCcCEEEEEEC
Q 000781 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILS 630 (1288)
Q Consensus 553 ~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~--l~~~~~H~~~V~~l~~s 630 (1288)
+..-...+. -.-.+.|++++ |++ +.++.|++|+.|+++.+..+.+ ......|.++|++++++
T Consensus 433 ------~~~~~~~~~-~~y~~s~vAv~-----~~~----~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 433 ------DQTKVSSIP-IGYESSAVAVS-----PDG----SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred ------cCCcceeec-cccccceEEEc-----CCC----CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 000111111 12456788884 687 9999999999999999987653 33566899999999999
Q ss_pred CCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE-ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-
Q 000781 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT- 708 (1288)
Q Consensus 631 p~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~-l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t- 708 (1288)
|+ +.+|+++...+.|.+||+.+++.... +.-|+..|.+++|+|+..++++|+.| -.|.||+++.
T Consensus 497 pd------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--------t~Viiysv~kP 562 (603)
T KOG0318|consen 497 PD------GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--------TNVIIYSVKKP 562 (603)
T ss_pred CC------CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--------ceEEEEEccCh
Confidence 99 89999999999999999999887433 33499999999999999999987765 7999999976
Q ss_pred CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 709 GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 709 g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
.+.+....+|...|..+.|-+ .+.+++..+|..+|.|++
T Consensus 563 ~~~i~iknAH~~gVn~v~wld------------------e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 563 AKHIIIKNAHLGGVNSVAWLD------------------ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred hhheEeccccccCceeEEEec------------------CceEEeccCcceeEEecc
Confidence 344566678887776665543 223445556999999974
No 11
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.6e-25 Score=254.98 Aligned_cols=594 Identities=13% Similarity=0.100 Sum_probs=340.2
Q ss_pred eeEEEeCCCCC---------CceEEEEEEeCCCCeEEEE--eCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEecc
Q 000781 5 SVACIWSGTPP---------SHRVTATSALTQPPTLYTG--GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICY 73 (1288)
Q Consensus 5 ~~~~lw~~~~p---------~h~VTala~spdg~~LaTG--s~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s 73 (1288)
-||||++..-. ...+||+|||++|+|+||| +..-.+++|+++. -..++-|..|+..|+|++|
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~-----h~vVAEfvdHKY~vtcvaF-- 130 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF-----HGVVAEFVDHKYNVTCVAF-- 130 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----ccchhhhhhccccceeeee--
Confidence 36777776532 2359999999999999999 4677899999995 3467788899999999977
Q ss_pred ccccccCcccccccccccCcccccccCCCCEEEEEeC--CCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCC------
Q 000781 74 PAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACT--DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS------ 145 (1288)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~LvS~s~--DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~------ 145 (1288)
+|.+++++|.+. |-.|.+||+.........+.. ...+. ..+..
T Consensus 131 -------------------------sp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkis---s~Vsa-v~fsEdgSYfv 181 (1080)
T KOG1408|consen 131 -------------------------SPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKIS---SVVSA-VAFSEDGSYFV 181 (1080)
T ss_pred -------------------------cCCCcEEEeeccccceEEEhhhhhhcccccccccc---eeEEE-EEEccCCceee
Confidence 667899998875 778888988633222222221 11111 11111
Q ss_pred --CCCceEEEEeeccCCcccccccccccccccc-c--------ccccCCCCCCCCceEEEEecCCceEEEEEeccccc--
Q 000781 146 --NPRYVCIGCCFIDTNQLSDHHSFESVEGDLV-S--------EDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS-- 212 (1288)
Q Consensus 146 --~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~-~--------~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~-- 212 (1288)
.-+++.+.... .+.. -.---++.|+.. + .+..++.++.-..+..|---. .+-.+.+++|-
T Consensus 182 T~gnrHvk~wyl~--~~~K--ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qG---hLvEFSsRRLLDK 254 (1080)
T KOG1408|consen 182 TSGNRHVKLWYLQ--IQSK--YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQG---HLVEFSSRRLLDK 254 (1080)
T ss_pred eeeeeeEEEEEee--cccc--ccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccc---ceeeechhhhhhh
Confidence 12333222222 1110 000011122211 0 111222222222333332110 11112221111
Q ss_pred -----cCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCcccc-----cCccccee--EeecCcccC
Q 000781 213 -----IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCK-----SSSQLDMA--ILQNGVVEG 280 (1288)
Q Consensus 213 -----~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~-----~~~~~~~v--~~~~~~~~~ 280 (1288)
...-.|++|.. ..|+.++.+|++++++..+.++-++...+-+. ..++.+.+ ...++....
T Consensus 255 WVqcRTTnAnCIcVs~--------r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD 326 (1080)
T KOG1408|consen 255 WVQCRTTNANCICVSS--------RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD 326 (1080)
T ss_pred hhhhhccccceeeeec--------ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCc
Confidence 11135666653 48999999999999998876554432222111 00011111 112222233
Q ss_pred ceEEEEecCCCEEEEEecCce--EEeecCCCccccee-eeeecceeecCCCCCcceEEEEEeeccccccccccccccccc
Q 000781 281 GHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEI-CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTF 357 (1288)
Q Consensus 281 v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~-s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~ 357 (1288)
..++.|.+.++.+..+..++. |||+ ..-+.+|+. ++.++..| +++..-+ .-+ ++.....|- .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDv-rD~~kvgk~~s~lyHS~c---------iW~Ve~~-p~n---v~~~~~acl-p 391 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDV-RDVNKVGKCSSMLYHSAC---------IWDVENL-PCN---VHSPTAACL-P 391 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEec-cccccccceeeeeeccce---------eeeeccc-ccc---ccCcccccC-C
Confidence 456677888899999999999 7776 222233333 22222222 2222211 000 111111111 1
Q ss_pred ceeEEEEeCCCCEEEEEEcCC--CcccccC----CccccCcccCCCCCeeeEEEeeccceEEEeeeeeccccccccccCe
Q 000781 358 YENFAVWDNRGSAIVYAISYM--NEKFDYE----PHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPY 431 (1288)
Q Consensus 358 ~~~i~vws~dG~~~ly~l~~~--~~~~~~~----~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~ 431 (1288)
.+.|.+.++||++++|++... +..++.. .+..|+....... .+....+.-|.......|+|-
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q------------~~~d~~~~~fdka~~s~~d~r 459 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ------------IMHDASAGIFDKALVSTCDSR 459 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh------------hhhhccCCcccccchhhcCcc
Confidence 346889999999999999852 1222221 1111222111100 111111111222222222222
Q ss_pred EEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceecccCCCc
Q 000781 432 ISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKI 511 (1288)
Q Consensus 432 i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~ 511 (1288)
+-+-.+.- .+..+.|++|+ ..+++++.++.+- .....+..|...
T Consensus 460 ~G~R~~~v-----Sp~gqhLAsGD---------------------------r~GnlrVy~Lq~l----~~~~~~eAHesE 503 (1080)
T KOG1408|consen 460 FGFRALAV-----SPDGQHLASGD---------------------------RGGNLRVYDLQEL----EYTCFMEAHESE 503 (1080)
T ss_pred cceEEEEE-----CCCcceecccC---------------------------ccCceEEEEehhh----hhhhheecccce
Confidence 21111110 11223444444 3444555555433 233455789999
Q ss_pred EEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccC
Q 000781 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591 (1288)
Q Consensus 512 Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~ 591 (1288)
|.|+-|.....-. ..|++|+.|.-|.|++.. .+-.+++++.+|...|+++.|.- .++ +
T Consensus 504 ilcLeyS~p~~~~-kLLASasrdRlIHV~Dv~--------------rny~l~qtld~HSssITsvKFa~----~gl---n 561 (1080)
T KOG1408|consen 504 ILCLEYSFPVLTN-KLLASASRDRLIHVYDVK--------------RNYDLVQTLDGHSSSITSVKFAC----NGL---N 561 (1080)
T ss_pred eEEEeecCchhhh-HhhhhccCCceEEEEecc--------------cccchhhhhcccccceeEEEEee----cCC---c
Confidence 9998775432110 128999999999995532 12236789999999999999952 233 4
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEecc-----CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H-----~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
..++|++.|+.|.+--.....-...|..| ...+..+++.|. ..++++++.|+.|+|||++.++..+.|+
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeec
Confidence 68999999999865433322222233332 346889999998 7899999999999999999999999996
Q ss_pred C---CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeC
Q 000781 667 G---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1288)
Q Consensus 667 g---H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w 743 (1288)
| |.+....|..+|.|.||+|.|.| .++.++|.-+|+++..+.||...|+.+.|.++-
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsd--------ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC------------ 695 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSD--------KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC------------ 695 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecC--------CceEEEEeccchhhhhhcCcchheeeeeecccc------------
Confidence 5 56778899999999999986543 899999999999999999999999888775421
Q ss_pred cccccCCceeeccCCcEEEEeC
Q 000781 744 NTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 744 ~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
-+++++..|+.|-+|.+
T Consensus 696 -----kHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 696 -----KHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -----hhheeecCCceEEEEEC
Confidence 14556666888888876
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.7e-24 Score=243.51 Aligned_cols=404 Identities=16% Similarity=0.131 Sum_probs=263.8
Q ss_pred eEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEee---ccccceEEeEeccccccccCcccccccccccCcc
Q 000781 18 RVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC---GHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1288)
Q Consensus 18 ~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~---GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~ 94 (1288)
-|.|+.++|||..++|.+.||+|.++|-.+ ...+..|. +|++.|-+| ++
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGkt-----ge~vg~l~~~~aHkGsIfal---sW-------------------- 243 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKT-----GEKVGELEDSDAHKGSIFAL---SW-------------------- 243 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCC-----ccEEEEecCCCCccccEEEE---EE--------------------
Confidence 399999999999999999999999999987 34455566 899999999 55
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccc
Q 000781 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1288)
Q Consensus 95 ~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~ 174 (1288)
+||++.++|+|+|.+++|||+.+.+|+...... .. -.+..+.|.=. .++
T Consensus 244 ----sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~---~~----------v~dqqvG~lWq--------------kd~ 292 (603)
T KOG0318|consen 244 ----SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG---ST----------VEDQQVGCLWQ--------------KDH 292 (603)
T ss_pred ----CCCCceEEEecCCceEEEEEeeccceEEEeecC---Cc----------hhceEEEEEEe--------------CCe
Confidence 899999999999999999999999999877654 11 11233333320 011
Q ss_pred cccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccc
Q 000781 175 LVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLD 254 (1288)
Q Consensus 175 ~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~ 254 (1288)
+++. .-.+.|.++++....+++++.+ |..+|+++++... +..|.+++.||.|.-|+.......
T Consensus 293 lItV--------Sl~G~in~ln~~d~~~~~~i~G---HnK~ITaLtv~~d------~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 293 LITV--------SLSGTINYLNPSDPSVLKVISG---HNKSITALTVSPD------GKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEEE--------EcCcEEEEecccCCChhheecc---cccceeEEEEcCC------CCEEEeeccCceEEEEecCCcccc
Confidence 1111 1357899999999999999999 8899999999853 359999999999999999875211
Q ss_pred cccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcc
Q 000781 255 REEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSY 332 (1288)
Q Consensus 255 ~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~ 332 (1288)
++. ..+|...+..++.+..+. +.+++-|.. +.++..++ + ..... -+.+..
T Consensus 356 -----~~~-----------g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~-----~--t~~~~----~~lg~Q 407 (603)
T KOG0318|consen 356 -----RLA-----------GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNG-----Y--TKSEV----VKLGSQ 407 (603)
T ss_pred -----ccc-----------cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCc-----c--cccce----eecCCC
Confidence 111 123333334444333233 333333333 22220000 0 00000 000000
Q ss_pred eEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceE
Q 000781 333 VIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYL 412 (1288)
Q Consensus 333 ~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L 412 (1288)
..+.... +++ .+++......
T Consensus 408 P~~lav~-~d~----------------~~avv~~~~~------------------------------------------- 427 (603)
T KOG0318|consen 408 PKGLAVL-SDG----------------GTAVVACISD------------------------------------------- 427 (603)
T ss_pred ceeEEEc-CCC----------------CEEEEEecCc-------------------------------------------
Confidence 0111111 000 0111000000
Q ss_pred EEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccccccc
Q 000781 413 LRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEH 492 (1288)
Q Consensus 413 ~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~ 492 (1288)
+.+ +++. .+...++
T Consensus 428 -------------------iv~-----------------l~~~-~~~~~~~----------------------------- 441 (603)
T KOG0318|consen 428 -------------------IVL-----------------LQDQ-TKVSSIP----------------------------- 441 (603)
T ss_pred -------------------EEE-----------------EecC-Ccceeec-----------------------------
Confidence 111 1100 0000000
Q ss_pred cCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcC
Q 000781 493 VDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA 572 (1288)
Q Consensus 493 ~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~ 572 (1288)
-.-...++++.++... .+.|+.||.+.++... +. ..+....+..|.++
T Consensus 442 ---------------~~y~~s~vAv~~~~~~----vaVGG~Dgkvhvysl~--g~-----------~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 442 ---------------IGYESSAVAVSPDGSE----VAVGGQDGKVHVYSLS--GD-----------ELKEEAKLLEHRAA 489 (603)
T ss_pred ---------------cccccceEEEcCCCCE----EEEecccceEEEEEec--CC-----------cccceeeeecccCC
Confidence 0012344455555665 8999999999996654 11 11244566789999
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEE-EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcE
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~-~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV 651 (1288)
|++++| |||| .+|++|...+.|.+||+.+.+... .+.-|+..|+|++|+|+ ...+|+||.|.+|
T Consensus 490 iT~vay-----Spd~----~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~------n~~vATGSlDt~V 554 (603)
T KOG0318|consen 490 ITDVAY-----SPDG----AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN------NKLVATGSLDTNV 554 (603)
T ss_pred ceEEEE-----CCCC----cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC------ceEEEeccccceE
Confidence 999999 6799 999999999999999999888643 35559999999999999 7899999999999
Q ss_pred EEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 652 ALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 652 ~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
.||+++.. +.+.....|...|+.+.|-. ...+++.+ .|..||+|++.
T Consensus 555 iiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG--------~Da~iK~W~v~ 602 (603)
T KOG0318|consen 555 IIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSG--------QDANIKVWNVT 602 (603)
T ss_pred EEEEccChhhheEeccccccCceeEEEec-CceEEecc--------CcceeEEeccc
Confidence 99999864 34555678988899999974 45666422 35899999874
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-23 Score=247.34 Aligned_cols=437 Identities=16% Similarity=0.142 Sum_probs=270.9
Q ss_pred CCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcc
Q 000781 15 PSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1288)
Q Consensus 15 p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~ 94 (1288)
+-..|+++.++.|.++|++||.|-+++||.++. .+......+.||+.+|.+.-|
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~---~k~~~~~~l~gHkd~VvacfF----------------------- 197 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG---NKNLFTYALNGHKDYVVACFF----------------------- 197 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEecc---ccccceEeccCCCcceEEEEe-----------------------
Confidence 344599999999999999999999999999995 222335678899999988855
Q ss_pred cccccCCCCEEEEEeCCCeEEEEECCCC--eeEEEe-----------------eCCCCcCCCceeeeeCCCCCceEEEEe
Q 000781 95 MGKSSLDNGALISACTDGVLCVWSRSSG--HCRRRR-----------------KLPPWVGSPSVICTLPSNPRYVCIGCC 155 (1288)
Q Consensus 95 ~~~~s~d~~~LvS~s~DG~l~vWdl~~G--~c~~~~-----------------~l~~~~~~~s~I~~l~~~~~~~~l~c~ 155 (1288)
..++.-+.+.|.||.+++|..... ...... +.++....-.....+..++ ..+.|+
T Consensus 198 ----~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~--~kvtaa 271 (893)
T KOG0291|consen 198 ----GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS--SKVTAA 271 (893)
T ss_pred ----ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc--cceeee
Confidence 445667999999999999977611 000000 0000000001111111111 112222
Q ss_pred eccCCcccccccccccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEE
Q 000781 156 FIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLM 235 (1288)
Q Consensus 156 g~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~ll 235 (1288)
. -| ........+-..+.+.+++.-+..+++.+.- ...+|..++|...| +.+-+
T Consensus 272 ~---fH----------------~~t~~lvvgFssG~f~LyelP~f~lih~LSi---s~~~I~t~~~N~tG-----DWiA~ 324 (893)
T KOG0291|consen 272 A---FH----------------KGTNLLVVGFSSGEFGLYELPDFNLIHSLSI---SDQKILTVSFNSTG-----DWIAF 324 (893)
T ss_pred e---cc----------------CCceEEEEEecCCeeEEEecCCceEEEEeec---ccceeeEEEecccC-----CEEEE
Confidence 1 00 0000001111233444555555556666665 45668888887652 33444
Q ss_pred EecCCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCceEEeecCCCccccee
Q 000781 236 VDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEI 315 (1288)
Q Consensus 236 s~s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~i~~~l~~~~~~g~~ 315 (1288)
+.+.-|.+.||....+ + -+-.+.+|...+.+++++|||+++++.
T Consensus 325 g~~klgQLlVweWqsE----------------s-YVlKQQgH~~~i~~l~YSpDgq~iaTG------------------- 368 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSE----------------S-YVLKQQGHSDRITSLAYSPDGQLIATG------------------- 368 (893)
T ss_pred cCCccceEEEEEeecc----------------c-eeeeccccccceeeEEECCCCcEEEec-------------------
Confidence 4456688889988763 1 222345666666777777777655544
Q ss_pred eeeecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccC
Q 000781 316 CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSY 395 (1288)
Q Consensus 316 s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~ 395 (1288)
.+||+++||+...+ .++.+-..
T Consensus 369 -------------------------------------------------~eDgKVKvWn~~Sg---------fC~vTFte 390 (893)
T KOG0291|consen 369 -------------------------------------------------AEDGKVKVWNTQSG---------FCFVTFTE 390 (893)
T ss_pred -------------------------------------------------cCCCcEEEEeccCc---------eEEEEecc
Confidence 44455555554432 23333333
Q ss_pred CCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCccc
Q 000781 396 PSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCT 475 (1288)
Q Consensus 396 ~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v 475 (1288)
+...+..+.|.+.++.+++.. -+++ |+.|++
T Consensus 391 Hts~Vt~v~f~~~g~~llssS-----LDGt------VRAwDl-------------------------------------- 421 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSS-----LDGT------VRAWDL-------------------------------------- 421 (893)
T ss_pred CCCceEEEEEEecCCEEEEee-----cCCe------EEeeee--------------------------------------
Confidence 334444445555544444432 2233 555542
Q ss_pred CccccccccCccccccccCCCCCCCcceecc-cCCCcEEEEEeeecCcccCCEEEEEEcC-CcEEEEEecccccCCCCCC
Q 000781 476 GKSDLTFCQDTVPRSEHVDSRQAGDGRDDFV-HKEKIVSSSMVISESFYAPYAIVYGFFS-GEIEVIQFDLFERHNSPGA 553 (1288)
Q Consensus 476 ~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~-~h~~~Vts~~~is~~~~~p~~lv~Gs~D-G~I~i~~~d~~~~~~~~~~ 553 (1288)
.+-. ...+|. +.+....|++.-++... ++.|..| -.|++|
T Consensus 422 -----------------kRYr----NfRTft~P~p~QfscvavD~sGel----V~AG~~d~F~IfvW------------- 463 (893)
T KOG0291|consen 422 -----------------KRYR----NFRTFTSPEPIQFSCVAVDPSGEL----VCAGAQDSFEIFVW------------- 463 (893)
T ss_pred -----------------cccc----eeeeecCCCceeeeEEEEcCCCCE----EEeeccceEEEEEE-------------
Confidence 2211 112221 11223445444444442 4444444 356663
Q ss_pred ccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCce-EEEEeccCcCEEEEEECCC
Q 000781 554 SLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVMHHHVAPVRQIILSPP 632 (1288)
Q Consensus 554 ~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~-l~~~~~H~~~V~~l~~sp~ 632 (1288)
++++|+.+-.|.||.++|.+++| +|+| +.|+|||.|+|||+||+..... ..++ .+..-|..++|.|+
T Consensus 464 --S~qTGqllDiLsGHEgPVs~l~f-----~~~~----~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 464 --SVQTGQLLDILSGHEGPVSGLSF-----SPDG----SLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPD 531 (893)
T ss_pred --EeecCeeeehhcCCCCcceeeEE-----cccc----CeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCC
Confidence 37799999999999999999999 4677 8999999999999999976543 3344 56678999999999
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECCCceeEEEecC--------------------CCCCcEEEEEcCCCCEEEEEecCCC
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--------------------HPNYPAKVVWDCPRGYIACLCRDHS 692 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~g--------------------H~~~V~~V~~sp~~~~L~tg~~D~s 692 (1288)
|..+|.+..||.|.+||.+.+..+..+.| .....+.+++++||.+++.|+..
T Consensus 532 ------G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s-- 603 (893)
T KOG0291|consen 532 ------GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES-- 603 (893)
T ss_pred ------CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc--
Confidence 89999999999999999987655433321 12357899999999999976543
Q ss_pred cccCCCCeEEEEECCCCcEEEEEeC
Q 000781 693 RTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 693 gssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
+.|++||++++-+++.++-
T Consensus 604 ------n~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 604 ------NSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred ------ccEEEEECchhheeeeEEe
Confidence 7999999999999988763
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.4e-26 Score=246.60 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=201.6
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
...+|.+.|+.+.|.++... +++|+.|..|.+|... .|+ +...+++||.++|+.+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~----~aSgG~Dr~I~LWnv~-----------gdc---eN~~~lkgHsgAVM~l~~----- 98 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSC----FASGGSDRAIVLWNVY-----------GDC---ENFWVLKGHSGAVMELHG----- 98 (338)
T ss_pred hcCCCcceEEEEEECCCCCe----EeecCCcceEEEEecc-----------ccc---cceeeeccccceeEeeee-----
Confidence 34789999999888887777 9999999999997632 123 367888999999999999
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~ 663 (1288)
.+|+ ..++|+|.|++++.||+++|++++++++|.+-|+++..+..+ ...++|++.|++++|||+|+..+++
T Consensus 99 ~~d~----s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg-----~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 99 MRDG----SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG-----PQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred ccCC----CEEEEecCCceEEEEecccceeeehhccccceeeecCccccC-----CeEEEecCCCceEEEEeecccchhh
Confidence 4677 999999999999999999999999999999999999844332 4689999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeC
Q 000781 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1288)
Q Consensus 664 ~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w 743 (1288)
++... .+++++.|..++..+++|+.| +.|++||++.+...+++.||.+.|+.+...+ .|
T Consensus 170 t~~~k-yqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-------~g----- 228 (338)
T KOG0265|consen 170 TFENK-YQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKNDGLYTLSGHADTITGLSLSR-------YG----- 228 (338)
T ss_pred ccccc-eeEEEEEecccccceeecccc--------CceeeeccccCcceEEeecccCceeeEEecc-------CC-----
Confidence 88643 589999999999999977665 8999999999999999999999998774432 33
Q ss_pred cccccCCceeeccCCcEEEEeCCcccccccccccCCCcccccccCCCCCCCCCCcccccccccccccCCCCCCcE
Q 000781 744 NTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIA 818 (1288)
Q Consensus 744 ~~~~s~~l~~~~~D~tvr~w~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~s~~~~~~~~~~ik~~~~~~~~~ 818 (1288)
.++.++++ |+++|+|+.+ ++.+..++.+++.|+.++ |+++.|+|+|++.+..
T Consensus 229 s~llsnsM-----d~tvrvwd~r--------p~~p~~R~v~if~g~~hn----------feknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 229 SFLLSNSM-----DNTVRVWDVR--------PFAPSQRCVKIFQGHIHN----------FEKNLLKCSWSPNGTK 280 (338)
T ss_pred Cccccccc-----cceEEEEEec--------ccCCCCceEEEeecchhh----------hhhhcceeeccCCCCc
Confidence 47777788 9999999987 455666667777788776 8888999999885443
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=3.6e-24 Score=230.11 Aligned_cols=201 Identities=21% Similarity=0.302 Sum_probs=176.5
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
.+.+|.+.+.|+.|+.+.. |++|+.|.+.-+ ||+++++....|.||.+.|.+|.+.|.
T Consensus 140 ~l~gHtgylScC~f~dD~~-----ilT~SGD~TCal---------------WDie~g~~~~~f~GH~gDV~slsl~p~-- 197 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFLDDNH-----ILTGSGDMTCAL---------------WDIETGQQTQVFHGHTGDVMSLSLSPS-- 197 (343)
T ss_pred eecCccceeEEEEEcCCCc-----eEecCCCceEEE---------------EEcccceEEEEecCCcccEEEEecCCC--
Confidence 3567999999999999766 899999999988 448899999999999999999999641
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~ 663 (1288)
++ +.++||+.|++.++||++.+.+.++|.+|..-|++|.|.|+ |.-|++||+|++.|+||+|..+.+.
T Consensus 198 --~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 198 --DG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred --CC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCCcEEe
Confidence 66 99999999999999999999999999999999999999999 8999999999999999999999988
Q ss_pred EecCC--CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeeccee
Q 000781 664 MFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVL 741 (1288)
Q Consensus 664 ~l~gH--~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~ 741 (1288)
.+... ..+|++|+|+-.|++|++|.. |.++.|||.-.++.+..+.||..+|.++..+++ ....++|+
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRlLfagy~--------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D-G~av~TgS-- 334 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRLLFAGYD--------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD-GMAVATGS-- 334 (343)
T ss_pred eeccCcccCCceeEEEcccccEEEeeec--------CCceeEeeccccceEEEeeccCCeeEEEEECCC-CcEEEecc--
Confidence 88632 247899999999999996533 589999999999999999999999988877653 23455665
Q ss_pred eCcccccCCceeeccCCcEEEE
Q 000781 742 NGNTSVSSLLLPIHEDGTFRQS 763 (1288)
Q Consensus 742 ~w~~~~s~~l~~~~~D~tvr~w 763 (1288)
- |.++|+|
T Consensus 335 ---------W-----Ds~lriW 342 (343)
T KOG0286|consen 335 ---------W-----DSTLRIW 342 (343)
T ss_pred ---------h-----hHheeec
Confidence 2 8899999
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-22 Score=238.24 Aligned_cols=518 Identities=16% Similarity=0.133 Sum_probs=321.1
Q ss_pred CCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeec-cccceEEeEeccccccccCcccccccccccCcccccccCCCCEE
Q 000781 27 QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL 105 (1288)
Q Consensus 27 dg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~G-H~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~L 105 (1288)
-|.+|+++..++.|.+|+.....++.......+.. |.. |++|. .+ +--=+.+
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~--HP------------------------~TYLNKI 175 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALL--HP------------------------STYLNKI 175 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEe--cc------------------------hhheeeE
Confidence 56778888888888899887410110111122222 333 88773 34 2223568
Q ss_pred EEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccccCCCC
Q 000781 106 ISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMK 185 (1288)
Q Consensus 106 vS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~~~d~~~~~~ 185 (1288)
+-|+.+|.|.+||+.+|+.+...+.. ...|..+.+.+-.-.+....
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~f~~~-----~s~IT~ieqsPaLDVVaiG~----------------------------- 221 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYTFQEF-----FSRITAIEQSPALDVVAIGL----------------------------- 221 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEEeccc-----ccceeEeccCCcceEEEEec-----------------------------
Confidence 99999999999999999999876543 36666666555322222222
Q ss_pred CCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCcccccC
Q 000781 186 NPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSS 265 (1288)
Q Consensus 186 ~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~~~ 265 (1288)
..++|.+++....+++.++.+ ..++|++++|..+| ..++++++..|.+-+|||++.. .
T Consensus 222 --~~G~ViifNlK~dkil~sFk~---d~g~VtslSFrtDG-----~p~las~~~~G~m~~wDLe~kk----l-------- 279 (910)
T KOG1539|consen 222 --ENGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRTDG-----NPLLASGRSNGDMAFWDLEKKK----L-------- 279 (910)
T ss_pred --cCceEEEEEcccCcEEEEEEc---cccceeEEEeccCC-----CeeEEeccCCceEEEEEcCCCe----e--------
Confidence 458999999999999999999 77899999998643 4588888888999999999841 1
Q ss_pred cccceeEeecCcccCceEEEEecCCCEEEEEecCce----EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeec
Q 000781 266 SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC----IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLER 341 (1288)
Q Consensus 266 ~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~----i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~ 341 (1288)
+-...+.|.+++....+.+....++..+.|.. +||.-++. -.+ +-.+.++... .....|.
T Consensus 280 ----~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~---pR~-----LR~R~GHs~P--p~~irfy-- 343 (910)
T KOG1539|consen 280 ----INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV---PRL-----LRSRGGHSAP--PSCIRFY-- 343 (910)
T ss_pred ----eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc---chh-----eeeccCCCCC--chheeee--
Confidence 12234566677777777776667777666655 55531111 111 2223333221 1222222
Q ss_pred ccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeeeecc
Q 000781 342 VVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFH 421 (1288)
Q Consensus 342 ~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~ 421 (1288)
+.....+.....|.+.+.|.+-.. ...+.+... .... +....-..
T Consensus 344 -------------~~~g~~ilsa~~Drt~r~fs~~~e---~~~~~l~~~---~~~~----------------~~kk~~~~ 388 (910)
T KOG1539|consen 344 -------------GSQGHFILSAKQDRTLRSFSVISE---SQSQELGQL---HNKK----------------RAKKVNVF 388 (910)
T ss_pred -------------ccCcEEEEecccCcchhhhhhhHH---HHhHhhccc---cccc----------------cccccccc
Confidence 111235555666666665554320 000000000 0000 00000000
Q ss_pred ccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccccccccCCCCCC--
Q 000781 422 VEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAG-- 499 (1288)
Q Consensus 422 ~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~-- 499 (1288)
....+..+|.+.+ + ..+...+.|..-.. ..........|+..+..--.
T Consensus 389 ~~~~~k~p~i~~f-a---------------~~~~RE~~W~Nv~~--------------~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 389 STEKLKLPPIVEF-A---------------FENAREKEWDNVIT--------------AHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred chhhhcCCcceee-e---------------cccchhhhhcceeE--------------EecCcceEEEEeccCcccccEE
Confidence 0111122222221 1 11112223433211 11222334445544332100
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE---ecCCcCEEEE
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAVLCL 576 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l---~gH~~~V~~L 576 (1288)
-....|+.....+++++......| .+.|+..|.|.++. +++|-....| ..|.++|+.+
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF----~~IG~S~G~Id~fN---------------mQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNF----VFIGYSKGTIDRFN---------------MQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred ecCccccccCcceEEEEEeccCce----EEEeccCCeEEEEE---------------cccCeeecccccCccccCceeEE
Confidence 011123334568888888888888 99999999999944 4456566666 5899999999
Q ss_pred EEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEEC
Q 000781 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1288)
Q Consensus 577 ~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1288)
+. |+ -++.++|++.||-+++||..+..++..+.. ...++++..+.. ...++.+.+|-.|+++|.
T Consensus 500 a~-------D~--~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~------s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 500 AV-------DG--TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRV------SDLLAIALDDFSIRVVDV 563 (910)
T ss_pred Ee-------cC--CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeeh------hhhhhhhcCceeEEEEEc
Confidence 98 33 347899999999999999998888877754 345777777666 678999999999999999
Q ss_pred CCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceee
Q 000781 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1288)
Q Consensus 657 ~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~ 736 (1288)
.+.+.++.|.||.+.|+++.|+|||++|++++.| ++||+||+.||.++..+.-.. +.+.+.|++
T Consensus 564 ~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlpt~~lID~~~vd~-~~~sls~SP------- 627 (910)
T KOG1539|consen 564 VTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLPTGTLIDGLLVDS-PCTSLSFSP------- 627 (910)
T ss_pred hhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEeccCcceeeeEecCC-cceeeEECC-------
Confidence 9999999999999999999999999999986654 899999999999988775443 333343443
Q ss_pred ecceeeCcccccCCceeeccC-CcEEEEeCCccc
Q 000781 737 SGSVLNGNTSVSSLLLPIHED-GTFRQSQIQNDE 769 (1288)
Q Consensus 737 sgsi~~w~~~~s~~l~~~~~D-~tvr~w~~~~~~ 769 (1288)
+||++...+. | .-|-.|..+..-
T Consensus 628 -----ngD~LAT~Hv-----d~~gIylWsNkslF 651 (910)
T KOG1539|consen 628 -----NGDFLATVHV-----DQNGIYLWSNKSLF 651 (910)
T ss_pred -----CCCEEEEEEe-----cCceEEEEEchhHh
Confidence 2344444333 5 568888655433
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=7.7e-25 Score=261.38 Aligned_cols=210 Identities=17% Similarity=0.255 Sum_probs=186.9
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
....++-+|.++|....|.++..| |+++++|+++++|.. .+..+.-.++||..+|+++.|+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rf----LlScSED~svRLWsl---------------~t~s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRF----LLSCSEDSSVRLWSL---------------DTWSCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred ceeEEeecCCCceeeeeecccccc----eeeccCCcceeeeec---------------ccceeEEEecCCCcceeeEEec
Confidence 345567899999999999999998 999999999999654 4556788899999999999995
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~ 659 (1288)
|-| .++||||.|++.++|......+++.|.+|-+-|.|+.|+|+ ..++++||.|++||+||..+|
T Consensus 503 -----P~G----yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 503 -----PRG----YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred -----CCc----eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCCC
Confidence 567 99999999999999999999999999999999999999999 899999999999999999999
Q ss_pred eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecc
Q 000781 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1288)
Q Consensus 660 ~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgs 739 (1288)
..++.|.||.++|.+++|+|+|.||++| +.|+.|++||+.+|.++..+.||++.+..+.|+.+ |.
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg--------~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d-------g~ 632 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASG--------DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD-------GN 632 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeec--------ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC-------CC
Confidence 9999999999999999999999999954 44699999999999999999999999988888753 32
Q ss_pred eeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 740 VLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 740 i~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
..++++. |++||+||+...
T Consensus 633 -----vLasgg~-----DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 633 -----VLASGGA-----DNSVRLWDLTKV 651 (707)
T ss_pred -----EEEecCC-----CCeEEEEEchhh
Confidence 2333444 999999997543
No 18
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.7e-22 Score=233.31 Aligned_cols=566 Identities=14% Similarity=0.129 Sum_probs=325.0
Q ss_pred CCceEEEEEEeCCCC---eEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccccccc
Q 000781 15 PSHRVTATSALTQPP---TLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1288)
Q Consensus 15 p~h~VTala~spdg~---~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~ 91 (1288)
+..+|+|+.+.|+.+ .+++|+.||+|++|.++. .....+..+.||..++.|+.-
T Consensus 53 H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~---~~~~~i~~~~g~~~~~~cv~a-------------------- 109 (764)
T KOG1063|consen 53 HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD---EYLIKIYTIQGHCKECVCVVA-------------------- 109 (764)
T ss_pred CccceEEEEEcccccccceEEEccCCCcEEEEEEee---hheEEEEeecCcceeEEEEEe--------------------
Confidence 467799999999877 899999999999999983 345566778889988888832
Q ss_pred CcccccccCCCCEEEEEeCCCeEEEEECCCCe--eEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccc
Q 000781 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGH--CRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFE 169 (1288)
Q Consensus 92 ~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~--c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~ 169 (1288)
......+.++|+++.+||.+.-. |.+......-.-.|.....++ +.+...+.|.+
T Consensus 110 ---------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Gg------------- 166 (764)
T KOG1063|consen 110 ---------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGG------------- 166 (764)
T ss_pred ---------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecC-------------
Confidence 11223334899999999996555 333322211112344555555 66666777777
Q ss_pred ccccccccccccCCCCCCCCceEEEEecCC--ceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEee
Q 000781 170 SVEGDLVSEDKEVPMKNPPKCTLVIVDTYG--LTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1288)
Q Consensus 170 ~~~g~~~~~d~~~~~~~~~~~~I~i~D~~t--l~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~ 247 (1288)
.+..|.++.-.+ ...+..+.+ |.+=|.+++|...+ ..+.+++++|.|+.||+|.
T Consensus 167 ------------------s~~~v~~~s~~~d~f~~v~el~G---H~DWIrsl~f~~~~---~~~~~laS~SQD~yIRiW~ 222 (764)
T KOG1063|consen 167 ------------------SKFVVDLYSSSADSFARVAELEG---HTDWIRSLAFARLG---GDDLLLASSSQDRYIRIWR 222 (764)
T ss_pred ------------------cceEEEEeccCCcceeEEEEeec---cchhhhhhhhhccC---CCcEEEEecCCceEEEEEE
Confidence 344444443322 234555666 66669999998752 2367888999999999998
Q ss_pred ccCCcccc----cc------CCcccccCcccc-ee---EeecCcccCceEEEEecCCCEEEEEecCce--EEeecCC-Cc
Q 000781 248 SKESHLDR----EE------GNGLCKSSSQLD-MA---ILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGS-GS 310 (1288)
Q Consensus 248 l~~~~~~~----~~------~~~l~~~~~~~~-~v---~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~-~~ 310 (1288)
+.-..... +. ..+.+....+.. .+ ..+-+|...|.++-..+.+..++..+-|++ +|..-++ |-
T Consensus 223 i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi 302 (764)
T KOG1063|consen 223 IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI 302 (764)
T ss_pred EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccce
Confidence 76542111 00 111111100000 00 123488888999999999988888888877 5544211 11
Q ss_pred ccceeeeeecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCcccc
Q 000781 311 TIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEI 390 (1288)
Q Consensus 311 ~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i 390 (1288)
.+... .+....+ ....+.|+.|.+.++ .|+.++..|..++|+-.. ..+ ....
T Consensus 303 Wv~~v-----RlGe~gg-~a~GF~g~lw~~n~~----------------~ii~~g~~Gg~hlWkt~d--~~~----w~~~ 354 (764)
T KOG1063|consen 303 WVDVV-----RLGEVGG-SAGGFWGGLWSPNSN----------------VIIAHGRTGGFHLWKTKD--KTF----WTQE 354 (764)
T ss_pred EEEEE-----Eeecccc-cccceeeEEEcCCCC----------------EEEEecccCcEEEEeccC--ccc----eeec
Confidence 11111 1111111 123467788874444 688889999999999211 111 1122
Q ss_pred CcccCCCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCC
Q 000781 391 PAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDEN 470 (1288)
Q Consensus 391 ~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~ 470 (1288)
+...++-+.+.++.|.+.+.||+++. .|++ .++|+..++. ..|..=..+++-+
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs-----~DQT------TRlFa~wg~q----------------~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVS-----LDQT------TRLFARWGRQ----------------QEWHEIARPQIHG 407 (764)
T ss_pred cccccccccceeeeecCCCCEEEEec-----cccc------eeeecccccc----------------cceeeeccccccc
Confidence 33334456677899999999999886 4455 6666532221 1132211110000
Q ss_pred CC-ccc------CccccccccCccccccccCCCCCCCcceeccc-CCCcEEE---EEeeecCcccCCEEEE-EEcCCcEE
Q 000781 471 EG-SCT------GKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVH-KEKIVSS---SMVISESFYAPYAIVY-GFFSGEIE 538 (1288)
Q Consensus 471 ~g-~~v------~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~-h~~~Vts---~~~is~~~~~p~~lv~-Gs~DG~I~ 538 (1288)
.- .|+ ..+...+.....++++....- -.....+.+ ....... -+.++....+...++- -..+|..-
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f--v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF--VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHH--HHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 00 000 012222222233333221110 001111111 0000000 0000000000000110 01111110
Q ss_pred EEEe-cccccCCCCCCccccC-------CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCC-----cEEE
Q 000781 539 VIQF-DLFERHNSPGASLKVN-------SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-----SIRI 605 (1288)
Q Consensus 539 i~~~-d~~~~~~~~~~~~d~~-------t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~-----tI~v 605 (1288)
..-+ ++.............+ -...++.|.||...|+|++. +|+| ++++|++... .|++
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~-----s~~g----nliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI-----SPTG----NLIASACKSSLKEHAVIRL 556 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe-----cCCC----CEEeehhhhCCccceEEEE
Confidence 0000 0000000000000000 01134567899999999999 5688 9999998654 5899
Q ss_pred EeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee----EEEecCCCCCcEEEEEcCCC
Q 000781 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV----ERMFPGHPNYPAKVVWDCPR 681 (1288)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~----l~~l~gH~~~V~~V~~sp~~ 681 (1288)
|+..+......+.+|.-.|+.++|+|+ +.+|+++|.|+++.+|....... ......|+.-|++..|+|++
T Consensus 557 w~t~~W~~~~~L~~HsLTVT~l~FSpd------g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 557 WNTANWLQVQELEGHSLTVTRLAFSPD------GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EeccchhhhheecccceEEEEEEECCC------CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 999998888899999999999999999 89999999999999998754321 22367898888999999999
Q ss_pred CEEEEEecCCCcccCCCCeEEEEECCCC--cEEE--EEeCCCCceEEeeeecC
Q 000781 682 GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARER--VLRGTASHSMFDHFCKG 730 (1288)
Q Consensus 682 ~~L~tg~~D~sgssD~DgtV~VWDl~tg--~l~~--~l~GH~~~vi~~~~~~~ 730 (1288)
.+++|+++| .+|+||..... +.+. ....+...|+.+.+++-
T Consensus 631 ~~FaTaSRD--------K~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 631 KYFATASRD--------KKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred ceeEEecCC--------ceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 999987665 99999998776 3332 23457778888777753
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=7.4e-25 Score=238.53 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=119.5
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++++.|.+|++|+ ..++++++++.||...|.|+.| .| ++++|||.|.+|++||
T Consensus 333 IVsASgDRTikvW~---------------~st~efvRtl~gHkRGIAClQY-------r~----rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 333 IVSASGDRTIKVWS---------------TSTCEFVRTLNGHKRGIACLQY-------RD----RLVVSGSSDNTIRLWD 386 (499)
T ss_pred EEEecCCceEEEEe---------------ccceeeehhhhcccccceehhc-------cC----eEEEecCCCceEEEEe
Confidence 77888899999944 6688899999999999999988 34 8999999999999999
Q ss_pred CCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce---------eEEEecCCCCCcEEEEEc
Q 000781 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---------VERMFPGHPNYPAKVVWD 678 (1288)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~---------~l~~l~gH~~~V~~V~~s 678 (1288)
+..|.+++.+.||..-|+|+.|. .+.++||+.||+|++||+..+. |+.++..|++.|..+.|+
T Consensus 387 i~~G~cLRvLeGHEeLvRciRFd--------~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 387 IECGACLRVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred ccccHHHHHHhchHHhhhheeec--------CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 99999999999999999999997 4589999999999999998752 567778899999999996
Q ss_pred CCCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 679 p~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
. ..+++ ++ .|.+|-|||+..|..
T Consensus 459 ~--fqIvs-------ss-HddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 459 E--FQIIS-------SS-HDDTILIWDFLNGPP 481 (499)
T ss_pred c--eEEEe-------cc-CCCeEEEEEcCCCCc
Confidence 3 34552 22 257999999987654
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-23 Score=223.67 Aligned_cols=274 Identities=16% Similarity=0.178 Sum_probs=202.4
Q ss_pred ccccCccccccccCC-CCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000781 481 TFCQDTVPRSEHVDS-RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~-~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t 559 (1288)
.+.+..+=+|++... ...|.....|.+|...|+.+...++..| .++|+.||.+++|+ +.+
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~----alS~swD~~lrlWD---------------l~~ 94 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF----ALSASWDGTLRLWD---------------LAT 94 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce----EEeccccceEEEEE---------------ecC
Confidence 344444555555432 2345667888999999999999999998 99999999999943 678
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEecc--CcCEEEEEECCCCCCCC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H--~~~V~~l~~sp~~~~~~ 637 (1288)
+++.+.|.||+..|++++|+ +|. +.++|||.|++|++||+. |.+..++..+ .+.|.|+.|+|+..
T Consensus 95 g~~t~~f~GH~~dVlsva~s-----~dn----~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~--- 161 (315)
T KOG0279|consen 95 GESTRRFVGHTKDVLSVAFS-----TDN----RQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES--- 161 (315)
T ss_pred CcEEEEEEecCCceEEEEec-----CCC----ceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC---
Confidence 88999999999999999994 565 899999999999999986 4455555443 78999999999843
Q ss_pred CCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
..+|++++.|++||+||+++.+....+.||.+.++.+.++|||..+++|+ .||.+.+||++.++.++++.
T Consensus 162 -~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg--------kdg~~~LwdL~~~k~lysl~- 231 (315)
T KOG0279|consen 162 -NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG--------KDGEAMLWDLNEGKNLYSLE- 231 (315)
T ss_pred -CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC--------CCceEEEEEccCCceeEecc-
Confidence 56999999999999999999999999999999999999999999998544 45999999999999987774
Q ss_pred CCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCcccccccccccCCCcccccccCCCCCCCCCC
Q 000781 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNT 797 (1288)
Q Consensus 718 H~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~s 797 (1288)
|...|..+.|.+. ...+-...+..||+|++.... ....+. ++. ..
T Consensus 232 a~~~v~sl~fspn------------------rywL~~at~~sIkIwdl~~~~-----------~v~~l~----~d~--~g 276 (315)
T KOG0279|consen 232 AFDIVNSLCFSPN------------------RYWLCAATATSIKIWDLESKA-----------VVEELK----LDG--IG 276 (315)
T ss_pred CCCeEeeEEecCC------------------ceeEeeccCCceEEEeccchh-----------hhhhcc----ccc--cc
Confidence 5556766655531 111222336779999864110 000000 000 00
Q ss_pred cccccccccccccCCCCCCcEEEEeecccccccc
Q 000781 798 RIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPY 831 (1288)
Q Consensus 798 ~~~~~~~~~~ik~~~~~~~~~il~fDle~li~~~ 831 (1288)
|..-.-..+-+-|+|+++|.+.+.=+-...|...
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 0000012234568999999998887777766433
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=1.9e-22 Score=228.21 Aligned_cols=284 Identities=14% Similarity=0.110 Sum_probs=218.2
Q ss_pred ceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEE
Q 000781 216 WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIAL 295 (1288)
Q Consensus 216 is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~ 295 (1288)
|++++.... +..|++++.||.+++|+..+. .+..+..|.+++.++.....|++++.
T Consensus 238 VT~L~Wn~~------G~~LatG~~~G~~riw~~~G~------------------l~~tl~~HkgPI~slKWnk~G~yilS 293 (524)
T KOG0273|consen 238 VTSLDWNND------GTLLATGSEDGEARIWNKDGN------------------LISTLGQHKGPIFSLKWNKKGTYILS 293 (524)
T ss_pred cceEEecCC------CCeEEEeecCcEEEEEecCch------------------hhhhhhccCCceEEEEEcCCCCEEEe
Confidence 677777654 568999999999999998875 45568889999999999999999999
Q ss_pred EecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEE
Q 000781 296 VLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVY 373 (1288)
Q Consensus 296 v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly 373 (1288)
...|+. +|+.+.+ +....+ .++.. ..+...|. ..+ .|++-+.||.++||
T Consensus 294 ~~vD~ttilwd~~~g-~~~q~f-----~~~s~------~~lDVdW~-~~~----------------~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTG-TVKQQF-----EFHSA------PALDVDWQ-SND----------------EFATSSTDGCIHVC 344 (524)
T ss_pred ccCCccEEEEeccCc-eEEEee-----eeccC------CccceEEe-cCc----------------eEeecCCCceEEEE
Confidence 999988 7777332 222222 11111 11334455 444 56666666666666
Q ss_pred EEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEee
Q 000781 374 AISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGE 453 (1288)
Q Consensus 374 ~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~ 453 (1288)
++...
T Consensus 345 kv~~~--------------------------------------------------------------------------- 349 (524)
T KOG0273|consen 345 KVGED--------------------------------------------------------------------------- 349 (524)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 55430
Q ss_pred cCccceeecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEc
Q 000781 454 GFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF 533 (1288)
Q Consensus 454 G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~ 533 (1288)
.+..+|.+|.+.|+++.|-+.... |++++.
T Consensus 350 ----------------------------------------------~P~~t~~GH~g~V~alk~n~tg~L----LaS~Sd 379 (524)
T KOG0273|consen 350 ----------------------------------------------RPVKTFIGHHGEVNALKWNPTGSL----LASCSD 379 (524)
T ss_pred ----------------------------------------------CcceeeecccCceEEEEECCCCce----EEEecC
Confidence 122345668899999766666665 999999
Q ss_pred CCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCce
Q 000781 534 SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL 613 (1288)
Q Consensus 534 DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~ 613 (1288)
|+++++|. .....+.+.|++|...|..+.|+|.-.-....+.+..+++++.|++|++||+..|.+
T Consensus 380 D~TlkiWs---------------~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 380 DGTLKIWS---------------MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred CCeeEeee---------------cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 99999954 344457788999999999999976321000123346899999999999999999999
Q ss_pred EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCc
Q 000781 614 ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR 693 (1288)
Q Consensus 614 l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sg 693 (1288)
+++|..|..+|.+++|+|+ |.++++|+.||.|.+|+.++++.++.+.+. +.|..++|+.+|++|..
T Consensus 445 i~~f~kH~~pVysvafS~~------g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~------- 510 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPN------GRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGA------- 510 (524)
T ss_pred eEeeccCCCceEEEEecCC------CcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEE-------
Confidence 9999999999999999999 899999999999999999999999999875 57999999999988873
Q ss_pred ccCCCCeEEEEECC
Q 000781 694 TSDAVDVLFIWDVK 707 (1288)
Q Consensus 694 ssD~DgtV~VWDl~ 707 (1288)
+.. |+.++|-|++
T Consensus 511 ~~s-d~~vcvldlr 523 (524)
T KOG0273|consen 511 CAS-DGSVCVLDLR 523 (524)
T ss_pred Eec-CCCceEEEec
Confidence 222 5899999886
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.8e-24 Score=244.07 Aligned_cols=227 Identities=22% Similarity=0.263 Sum_probs=194.1
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
+-.++.+.+|+..+. .+..+|.-..-+|.+..|++-..| +++|+.|+.|+|..++ ++
T Consensus 31 ~LynG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRknW----iv~GsDD~~IrVfnyn---------------t~ 87 (794)
T KOG0276|consen 31 ALYNGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKNW----IVTGSDDMQIRVFNYN---------------TG 87 (794)
T ss_pred eeecCeeEEEecccc----eeeeeeeecccchhhheeeeccce----EEEecCCceEEEEecc---------------cc
Confidence 345666777876654 466777777789999999999999 9999999999996654 66
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-ceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
+.++.|..|...|.|++.||. - .+++|+|+|-+|++||.+.+ .+.++|.||+..|.+++|+|.. .
T Consensus 88 ekV~~FeAH~DyIR~iavHPt-----~----P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-----~ 153 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPT-----L----PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-----P 153 (794)
T ss_pred eeeEEeeccccceeeeeecCC-----C----CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC-----c
Confidence 789999999999999999873 2 79999999999999999865 5889999999999999999984 5
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCC--CEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR--GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~--~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
+.|+|+|-|++|++|.+....+..++.||...|+||.+-+.| .||++|+ | |.+|+|||..|.+|++++.|
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-------D-D~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-------D-DLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-------C-CceEEEeecchHHHHHHhhc
Confidence 799999999999999999999999999999999999997644 6999643 3 59999999999999999999
Q ss_pred CCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 718 H~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
|+..|.++.|.++.. -+++|+ +|||+|+|+.+.+.
T Consensus 226 Ht~Nvs~v~fhp~lp-iiisgs----------------EDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELP-IIISGS----------------EDGTVRIWNSKTYK 260 (794)
T ss_pred ccccceEEEecCCCc-EEEEec----------------CCccEEEecCccee
Confidence 999999887877653 455665 69999999866443
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.7e-23 Score=225.90 Aligned_cols=222 Identities=19% Similarity=0.200 Sum_probs=188.0
Q ss_pred cccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE
Q 000781 487 VPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1288)
Q Consensus 487 ~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l 566 (1288)
+++|+.... .+......+|...|.++.|.+...+ +++++.|.+|+.|+ +.++.++++|
T Consensus 174 ~~LWd~~~~---~~c~ks~~gh~h~vS~V~f~P~gd~----ilS~srD~tik~We---------------~~tg~cv~t~ 231 (406)
T KOG0295|consen 174 AKLWDFDTF---FRCIKSLIGHEHGVSSVFFLPLGDH----ILSCSRDNTIKAWE---------------CDTGYCVKTF 231 (406)
T ss_pred hhheeHHHH---HHHHHHhcCcccceeeEEEEecCCe----eeecccccceeEEe---------------cccceeEEec
Confidence 555555432 1234455789999999999998877 99999999999955 5578899999
Q ss_pred ecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCC---------C
Q 000781 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH---------P 637 (1288)
Q Consensus 567 ~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~---------~ 637 (1288)
.+|...|.-+..+ -|| .+++|+|.|.++++|-+.+++|...++.|.-+|.|++|.|...+. -
T Consensus 232 ~~h~ewvr~v~v~-----~DG----ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 232 PGHSEWVRMVRVN-----QDG----TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred cCchHhEEEEEec-----CCe----eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCC
Confidence 9999999999884 577 999999999999999999999999999999999999999974321 1
Q ss_pred CCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
-++++.+++.|++||+||+.+++|+.++.||.+.|..++|+|.|+||++ ++| |++++|||++++++.+++..
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S-------caD-Dktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS-------CAD-DKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE-------Eec-CCcEEEEEeccceeeeccCC
Confidence 2469999999999999999999999999999999999999999999994 455 79999999999999999999
Q ss_pred CCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 718 H~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
|...++.+.|.... +..++|+ + |.++++|.
T Consensus 375 h~hfvt~lDfh~~~-p~VvTGs-----------V-----dqt~KvwE 404 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTA-PYVVTGS-----------V-----DQTVKVWE 404 (406)
T ss_pred CcceeEEEecCCCC-ceEEecc-----------c-----cceeeeee
Confidence 99999988776533 2344444 4 89999995
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=210.97 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=140.2
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
.|.+|.+.|.++.+.++ .++.+++|+-|+..++ ||++.+.+.++|.||...|+++.|+
T Consensus 181 ~f~GH~gDV~slsl~p~---~~ntFvSg~cD~~akl---------------WD~R~~~c~qtF~ghesDINsv~ff---- 238 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPS---DGNTFVSGGCDKSAKL---------------WDVRSGQCVQTFEGHESDINSVRFF---- 238 (343)
T ss_pred EecCCcccEEEEecCCC---CCCeEEecccccceee---------------eeccCcceeEeecccccccceEEEc----
Confidence 34567788888666664 3455999999999999 3477888999999999999999997
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec--cCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~--H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
|+| .-++|||+|++.|+||++..+.+..|.. -..+|++++|+.. |+++.+|..|.++.+||.-.++.
T Consensus 239 -P~G----~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 239 -PSG----DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred -cCC----CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeeccccce
Confidence 577 8899999999999999999998888863 2358999999998 89999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
+..+.||.++|.++..+|||.-+++|+ +|.++|||.
T Consensus 308 vg~L~GHeNRvScl~~s~DG~av~TgS--------WDs~lriW~ 343 (343)
T KOG0286|consen 308 VGVLAGHENRVSCLGVSPDGMAVATGS--------WDSTLRIWA 343 (343)
T ss_pred EEEeeccCCeeEEEEECCCCcEEEecc--------hhHheeecC
Confidence 999999999999999999999998643 458999994
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=3.3e-22 Score=214.22 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=179.9
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
+..++.+|++.|+.+..... .|+.++.++.|..+.+|+... .|.+.|.+++.|.||...|..+..
T Consensus 7 l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~----------dd~~~G~~~r~~~GHsH~v~dv~~-- 71 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTS----------DDIKYGVPVRRLTGHSHFVSDVVL-- 71 (315)
T ss_pred eeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEecc----------CccccCceeeeeeccceEecceEE--
Confidence 44567899999999666544 566799999999999977652 257788899999999999999998
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
++|| ++.+|||.|+++++||+.+|+..+.|.+|+.-|.+++|+|+ ...++|||.|++|++||.. +.
T Consensus 72 ---s~dg----~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------n~qivSGSrDkTiklwnt~-g~ 137 (315)
T KOG0279|consen 72 ---SSDG----NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------NRQIVSGSRDKTIKLWNTL-GV 137 (315)
T ss_pred ---ccCC----ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------CceeecCCCcceeeeeeec-cc
Confidence 5788 99999999999999999999999999999999999999999 7899999999999999987 45
Q ss_pred eEEEecCC--CCCcEEEEEcCC--CCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceee
Q 000781 661 VERMFPGH--PNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1288)
Q Consensus 661 ~l~~l~gH--~~~V~~V~~sp~--~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~ 736 (1288)
|..++..+ .+.|.|++|+|+ ..+|+. +++|++|||||+++.++...+.||+.-+..+.++++.+....
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs--------~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVS--------ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEE--------ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 55555444 688999999998 567774 344699999999999999999999999988877664332222
Q ss_pred ecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 737 sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
.| +|+.+-.|+++...
T Consensus 210 Gg-----------------kdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 210 GG-----------------KDGEAMLWDLNEGK 225 (315)
T ss_pred CC-----------------CCceEEEEEccCCc
Confidence 22 49999999987443
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=1.3e-21 Score=221.52 Aligned_cols=290 Identities=21% Similarity=0.245 Sum_probs=210.4
Q ss_pred CCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEE
Q 000781 326 GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHF 405 (1288)
Q Consensus 326 ~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f 405 (1288)
..+.+..+.+..|-.+++ .++++..+|.+++|+.+. ..+.....+..+++.++|
T Consensus 231 s~~~nkdVT~L~Wn~~G~----------------~LatG~~~G~~riw~~~G----------~l~~tl~~HkgPI~slKW 284 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGT----------------LLATGSEDGEARIWNKDG----------NLISTLGQHKGPIFSLKW 284 (524)
T ss_pred cCCccCCcceEEecCCCC----------------eEEEeecCcEEEEEecCc----------hhhhhhhccCCceEEEEE
Confidence 334455666666653444 789999999999999886 333333344455556666
Q ss_pred eeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccC
Q 000781 406 IQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQD 485 (1288)
Q Consensus 406 ~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s 485 (1288)
...+.||+... .+.+ +.+|+ .
T Consensus 285 nk~G~yilS~~-----vD~t------tilwd-------------------------~----------------------- 305 (524)
T KOG0273|consen 285 NKKGTYILSGG-----VDGT------TILWD-------------------------A----------------------- 305 (524)
T ss_pred cCCCCEEEecc-----CCcc------EEEEe-------------------------c-----------------------
Confidence 55555555543 3333 44442 1
Q ss_pred ccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEE
Q 000781 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1288)
Q Consensus 486 ~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~ 565 (1288)
.. +...+.|.-|...-..+.+..+.. +++.+.||.|+|+..+ ...|..+
T Consensus 306 -------~~----g~~~q~f~~~s~~~lDVdW~~~~~-----F~ts~td~~i~V~kv~---------------~~~P~~t 354 (524)
T KOG0273|consen 306 -------HT----GTVKQQFEFHSAPALDVDWQSNDE-----FATSSTDGCIHVCKVG---------------EDRPVKT 354 (524)
T ss_pred -------cC----ceEEEeeeeccCCccceEEecCce-----EeecCCCceEEEEEec---------------CCCccee
Confidence 11 012223333443322233444455 5888899999997755 3337889
Q ss_pred EecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCC--CC-CCCEE
Q 000781 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE--HP-WSDCF 642 (1288)
Q Consensus 566 l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~--~~-~g~~l 642 (1288)
+.||.+.|.++.|+ |.| .+|+|+|.|+|++||......+.+.|.+|...|..+.|+|.++. .| .+..+
T Consensus 355 ~~GH~g~V~alk~n-----~tg----~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 355 FIGHHGEVNALKWN-----PTG----SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred eecccCceEEEEEC-----CCC----ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 99999999999995 567 89999999999999999999999999999999999999998754 22 34589
Q ss_pred EEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCce
Q 000781 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1288)
Q Consensus 643 ~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~v 722 (1288)
++++.|++|++||+..+.+++.|..|..+|++++|+|++.|+++|+. ||.|.+|++++|++.+++.+... |
T Consensus 426 ~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~--------dg~V~iws~~~~~l~~s~~~~~~-I 496 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL--------DGCVHIWSTKTGKLVKSYQGTGG-I 496 (524)
T ss_pred EEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC--------CCeeEeccccchheeEeecCCCe-E
Confidence 99999999999999999999999999999999999999999997655 49999999999999999988764 3
Q ss_pred EEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 723 MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 723 i~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
..+.|.. .| +.+...+.|+.+++-+++
T Consensus 497 fel~Wn~-------~G----------~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 497 FELCWNA-------AG----------DKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEcC-------CC----------CEEEEEecCCCceEEEec
Confidence 3333322 11 223344567877777654
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=9.8e-23 Score=243.50 Aligned_cols=224 Identities=23% Similarity=0.312 Sum_probs=187.2
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccc--c---C--CCC---------CCccccCCceeE
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFE--R---H--NSP---------GASLKVNSHVSR 563 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~--~---~--~~~---------~~~~d~~t~~~~ 563 (1288)
-...+|..-...|+|..|..+... +++|+.|..|++|.+.+.. + + ... ...-|-.+....
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssm----lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSM----LACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcch----hhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 455666667788999888888887 9999999999999887421 0 0 000 011122334456
Q ss_pred EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEE
Q 000781 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1288)
Q Consensus 564 ~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~ 643 (1288)
+++.||.++|....|+ |+. ++|+|+|+|++||+|.+.+..++..++||..||..+.|+|. |-+||
T Consensus 445 ~~L~GH~GPVyg~sFs-----Pd~----rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------GyYFa 509 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFS-----PDR----RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------GYYFA 509 (707)
T ss_pred EEeecCCCceeeeeec-----ccc----cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------ceEEE
Confidence 6799999999999995 565 89999999999999999999999999999999999999999 89999
Q ss_pred EEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceE
Q 000781 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1288)
Q Consensus 644 Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi 723 (1288)
|+|.|++.++|.....++++.|.||.+.|.|+.|+|+..|+++|+. |.+||+||+.+|..+|.|.||.++|+
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC--------CceEEEEEcCCCcEEEEecCCCCceE
Confidence 9999999999999999999999999999999999999999997543 48999999999999999999999999
Q ss_pred EeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCc
Q 000781 724 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1288)
Q Consensus 724 ~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~ 767 (1288)
++.|++ .| -+..++. +|+.|++||+.+
T Consensus 582 al~~Sp-------~G-----r~LaSg~-----ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 582 ALAFSP-------CG-----RYLASGD-----EDGLIKIWDLAN 608 (707)
T ss_pred EEEEcC-------CC-----ceEeecc-----cCCcEEEEEcCC
Confidence 998886 22 2333333 499999999864
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.8e-22 Score=219.20 Aligned_cols=172 Identities=21% Similarity=0.292 Sum_probs=143.7
Q ss_pred ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeec
Q 000781 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1288)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~ 581 (1288)
..+|.+|...|..+.+..+... +++++.|.++++|. ..++++...+++|.-+|-|++|.|.
T Consensus 228 v~t~~~h~ewvr~v~v~~DGti----~As~s~dqtl~vW~---------------~~t~~~k~~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 228 VKTFPGHSEWVRMVRVNQDGTI----IASCSNDQTLRVWV---------------VATKQCKAELREHEHPVECIAWAPE 288 (406)
T ss_pred EEeccCchHhEEEEEecCCeeE----EEecCCCceEEEEE---------------eccchhhhhhhccccceEEEEeccc
Confidence 3445556666666555555554 78888889999965 4466688899999999999999765
Q ss_pred ccCCC-----C-CccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 582 VGTAK-----G-WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 582 ~~Spd-----G-~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
.+.|+ | .+..+++++||.|++||+||+.+|.|+.++.+|...|..++|+|. |++|+|+.+|+++++||
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------GKYILSCADDKTLRVWD 362 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC------CeEEEEEecCCcEEEEE
Confidence 43222 1 012379999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 656 l~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
+++++|+.++..|+..|+++.|+.+-.|+++|+-| .+++||.-
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd--------qt~KvwEc 405 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKVWEC 405 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCCCceEEecccc--------ceeeeeec
Confidence 99999999999999999999999999999987654 89999974
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=1.7e-23 Score=227.88 Aligned_cols=221 Identities=23% Similarity=0.245 Sum_probs=185.5
Q ss_pred ccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000781 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1288)
Q Consensus 477 kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d 556 (1288)
++.....+.++++||..+- .....+.||++.|.|+.|-.- -+++|+.|.+|++|+
T Consensus 209 kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd~r------viisGSSDsTvrvWD--------------- 263 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYDER------VIVSGSSDSTVRVWD--------------- 263 (499)
T ss_pred hhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeeccce------EEEecCCCceEEEEe---------------
Confidence 5667778999999998765 355667899999999655332 399999999999955
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc---eEEEEeccCcCEEEEEECCCC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQ 633 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~---~l~~~~~H~~~V~~l~~sp~~ 633 (1288)
+++++++.++-+|..+|..+.|+ + .+++|+|.|.+|.+||+.... +.+.+.||...|+.+.|+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~------n-----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--- 329 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFS------N-----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--- 329 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEe------C-----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---
Confidence 55888999999999999999995 2 599999999999999998654 456788999999999996
Q ss_pred CCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 634 ~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
.++++|+|.|++|++|++.++++++++.||...|-|+.++ ++++++|+ + |.+|++||++.|.+++
T Consensus 330 -----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS------S--DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 330 -----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS------S--DNTIRLWDIECGACLR 394 (499)
T ss_pred -----cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC------C--CceEEEEeccccHHHH
Confidence 4699999999999999999999999999999999999886 67777533 3 4899999999999999
Q ss_pred EEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCcccc
Q 000781 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1288)
Q Consensus 714 ~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~~ 770 (1288)
.++||..-|-++.|-. ..+++| .+ ||++|+|++....+
T Consensus 395 vLeGHEeLvRciRFd~---krIVSG-----------aY-----DGkikvWdl~aald 432 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDN---KRIVSG-----------AY-----DGKIKVWDLQAALD 432 (499)
T ss_pred HHhchHHhhhheeecC---ceeeec-----------cc-----cceEEEEecccccC
Confidence 9999998887776643 334444 34 99999999875443
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=7.3e-21 Score=205.66 Aligned_cols=140 Identities=19% Similarity=0.297 Sum_probs=117.4
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++|+-|+.|++|+ +..+...+++.||...|+.+.. +++| .++.|-++|.++++||
T Consensus 189 v~sggIdn~ikvWd---------------~r~~d~~~~lsGh~DtIt~lsl-----s~~g----s~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 189 VISGGIDNDIKVWD---------------LRKNDGLYTLSGHADTITGLSL-----SRYG----SFLLSNSMDNTVRVWD 244 (338)
T ss_pred eeeccccCceeeec---------------cccCcceEEeecccCceeeEEe-----ccCC----CccccccccceEEEEE
Confidence 56667788888833 5455578999999999999998 5688 9999999999999999
Q ss_pred CCC----CceEEEEeccCc----CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcC
Q 000781 608 LGS----GNLITVMHHHVA----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1288)
Q Consensus 608 l~t----g~~l~~~~~H~~----~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp 679 (1288)
++. .+++..|.+|.- ....++|+|+ +..+..|+.|+.+.+||....+.+..++||.+.|+++.|+|
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCC------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 973 346888888643 3567789999 78999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 680 PRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 680 ~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
...+|.+++. |.+|++=+
T Consensus 319 ~e~iils~~s--------dk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSS--------DKTIYLGE 336 (338)
T ss_pred CCcEEEEecc--------CceeEeec
Confidence 9999986433 47888643
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=4.4e-20 Score=203.86 Aligned_cols=140 Identities=26% Similarity=0.395 Sum_probs=121.6
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++++.||.+++|+ ..+++....+..|...|+++.|+ |++ +.+++++.|+.|++||
T Consensus 150 l~~~~~~~~i~i~d---------------~~~~~~~~~~~~~~~~i~~~~~~-----~~~----~~l~~~~~~~~i~i~d 205 (289)
T cd00200 150 VASSSQDGTIKLWD---------------LRTGKCVATLTGHTGEVNSVAFS-----PDG----EKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEEcCCCcEEEEE---------------ccccccceeEecCccccceEEEC-----CCc----CEEEEecCCCcEEEEE
Confidence 55555588888854 33455677788999999999994 566 7899999999999999
Q ss_pred CCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000781 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687 (1288)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg 687 (1288)
+.+++.+..+..|.++|.++.|+|+ +.++++++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|+++
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 9999999999899999999999998 7889988889999999999999999999999999999999999999975
Q ss_pred ecCCCcccCCCCeEEEEE
Q 000781 688 CRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 688 ~~D~sgssD~DgtV~VWD 705 (1288)
+. |+.|++|+
T Consensus 280 ~~--------d~~i~iw~ 289 (289)
T cd00200 280 SA--------DGTIRIWD 289 (289)
T ss_pred cC--------CCeEEecC
Confidence 44 48999996
No 32
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=6e-21 Score=211.53 Aligned_cols=160 Identities=21% Similarity=0.231 Sum_probs=132.6
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
++.+|...|.++.+.+.. . +++++.|.+|+.|+ ++++....++.+ ....+|+.++|
T Consensus 255 tl~GHt~~Vs~V~w~d~~-v----~yS~SwDHTIk~WD---------------letg~~~~~~~~-~ksl~~i~~~~--- 310 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDAT-V----IYSVSWDHTIKVWD---------------LETGGLKSTLTT-NKSLNCISYSP--- 310 (423)
T ss_pred EecccccceeeEEEcCCC-c----eEeecccceEEEEE---------------eecccceeeeec-CcceeEeeccc---
Confidence 345688899887776632 2 89999999999944 566667777765 57899999964
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCCCc---eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~tg~---~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
.. ++|++||.|..|++||.+++. ..++|.+|.+.|.++.|+|.+ ...|+||+.|+++++||+|+.+
T Consensus 311 --~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~-----~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 311 --LS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN-----EFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred --cc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC-----ceEEEEEecCCeEEEEEeccCC
Confidence 44 899999999999999998764 457899999999999999984 4689999999999999999887
Q ss_pred -eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 661 -VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 661 -~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
++..+.+|.+.|.++.|+. +.++++|+. |++++|+.-.
T Consensus 380 ~plydI~~h~DKvl~vdW~~-~~~IvSGGa--------D~~l~i~~~~ 418 (423)
T KOG0313|consen 380 APLYDIAGHNDKVLSVDWNE-GGLIVSGGA--------DNKLRIFKGS 418 (423)
T ss_pred CcceeeccCCceEEEEeccC-CceEEeccC--------cceEEEeccc
Confidence 9999999999999999984 567886554 4899998643
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.88 E-value=3.2e-22 Score=219.33 Aligned_cols=169 Identities=28% Similarity=0.393 Sum_probs=154.1
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
.+..+++.||.+.|.|+++.| . +++++||+.|++|+|||+.+|++..++.||...|..+++++. -
T Consensus 141 wKl~rVi~gHlgWVr~vavdP-----~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r------H 205 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDP-----G----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR------H 205 (460)
T ss_pred ceehhhhhhccceEEEEeeCC-----C----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc------C
Confidence 457788999999999999954 3 389999999999999999999999999999999999999998 5
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
.++.|++.|+.|+.||++..+.++.+.||.+.|+++..+|..+.|++|++| .++||||++|...+.++.||.
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD--------st~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD--------STIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCc--------ceEEEeeecccceEEEecCCC
Confidence 799999999999999999999999999999999999999999999986654 899999999999999999999
Q ss_pred CceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 720 ~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
..|..+ .|.+..+++++|+ .|.|||.||++..
T Consensus 278 ~~V~~V-~~~~~dpqvit~S----------------~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 278 NPVASV-MCQPTDPQVITGS----------------HDSTVRLWDLRAG 309 (460)
T ss_pred CcceeE-EeecCCCceEEec----------------CCceEEEeeeccC
Confidence 999776 7777777777777 3999999998654
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.5e-21 Score=222.24 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=165.7
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
.+..|..|.+.|.|+++-+..++ +++++.|-.|++|+|+.. ..+.++|.||+..|.+++|+|
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~----vLtsSDDm~iKlW~we~~--------------wa~~qtfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPY----VLTSSDDMTIKLWDWENE--------------WACEQTFEGHEHYVMQVAFNP 150 (794)
T ss_pred eeEEeeccccceeeeeecCCCCe----EEecCCccEEEEeeccCc--------------eeeeeEEcCcceEEEEEEecC
Confidence 34567778999999888888888 999999999999998833 237899999999999999987
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
. | .+.++|+|.|+||++|.+....+..++.+|...|+|+.+-+.+. ..+++||++|.+++|||.++..
T Consensus 151 k----D----~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd----kpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 151 K----D----PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD----KPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred C----C----ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC----cceEEecCCCceEEEeecchHH
Confidence 3 3 37899999999999999999999999999999999999988632 4599999999999999999999
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeee
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
|++++.||.+-|..+.|+|.-..+++|+. ||+||||+-.|.+++.++.=.-.++.++...
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lpiiisgsE--------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~ 278 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELPIIISGSE--------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAH 278 (794)
T ss_pred HHHHhhcccccceEEEecCCCcEEEEecC--------CccEEEecCcceehhhhhhcCCceEEEEeec
Confidence 99999999999999999999999997655 4999999999988888877666677555433
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=9.4e-20 Score=201.44 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=100.9
Q ss_pred cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC
Q 000781 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1288)
Q Consensus 568 gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~ 647 (1288)
+|...+.|+.+.|. +.. -.+.|+|+.||+|.|||+.+.++.+.+ .|..+|+.+.|.+. .++++++.
T Consensus 281 ~~e~~~esve~~~~--ss~----lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t-------~~l~t~c~ 346 (399)
T KOG0296|consen 281 SQEELDESVESIPS--SSK----LPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNT-------DYLLTACA 346 (399)
T ss_pred cchhhhhhhhhccc--ccc----cchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCc-------chheeecc
Confidence 56777888887652 122 278999999999999999887765555 79999999999874 68999999
Q ss_pred CCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 648 DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
||.|+.||.|+|+++.++.||...|.+++.+|+.++++|++. |++.+|++..
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~--------D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD--------DNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC--------CCeEEEEecC
Confidence 999999999999999999999999999999999999997554 4899999864
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.87 E-value=1.6e-19 Score=190.62 Aligned_cols=127 Identities=18% Similarity=0.215 Sum_probs=107.4
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.+...|..++|+.... .....-+++..|+.|++.++...+ |||+ ++|+++|.|.+++||+
T Consensus 182 l~a~nnkG~cyvW~l~~~---------~~~s~l~P~~k~~ah~~~il~C~l-----SPd~----k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNH---------QTASELEPVHKFQAHNGHILRCLL-----SPDV----KYLATCSSDKTVKIWN 243 (311)
T ss_pred EEEecCCccEEEEEccCC---------CccccceEhhheecccceEEEEEE-----CCCC----cEEEeecCCceEEEEe
Confidence 666666788888664321 112233478889999999999999 5788 9999999999999999
Q ss_pred CCCC-ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEc
Q 000781 608 LGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1288)
Q Consensus 608 l~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~s 678 (1288)
.++. +.-.++.+|...|..++|+.+ +++|++++.|+.+++||++.++.++...||.....|++.+
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~d------g~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSAD------GEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccC------ccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9887 666789999999999999999 8999999999999999999999999999998777777654
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=1.9e-19 Score=234.20 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=114.0
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCce-eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV-SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~-~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
+++|+.||.|++|+.. +.+ +...+.+|...|+++.|. ++ ..|++|+.|++|++|
T Consensus 633 latgs~dg~I~iwD~~---------------~~~~~~~~~~~h~~~V~~v~f~------~~----~~lvs~s~D~~ikiW 687 (793)
T PLN00181 633 LAFGSADHKVYYYDLR---------------NPKLPLCTMIGHSKTVSYVRFV------DS----STLVSSSTDNTLKLW 687 (793)
T ss_pred EEEEeCCCeEEEEECC---------------CCCccceEecCCCCCEEEEEEe------CC----CEEEEEECCCEEEEE
Confidence 7778888888885532 222 456778999999999993 44 789999999999999
Q ss_pred eCCC------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEe-------------cC
Q 000781 607 DLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-------------PG 667 (1288)
Q Consensus 607 Dl~t------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l-------------~g 667 (1288)
|+.. +++++.+.+|...++++.|+|+ +.+|++|+.|++|++|+.....++..+ ..
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9974 3578899999999999999998 789999999999999998765443222 23
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 668 H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
|...|.+++|+|++.+|++|+. ||+|+|||+
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~--------dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANS--------TGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecC--------CCcEEEEec
Confidence 4556899999999999997654 499999996
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=236.28 Aligned_cols=227 Identities=21% Similarity=0.194 Sum_probs=190.2
Q ss_pred ccccccccCccccccccCCCCCCCccee-cccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000781 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDD-FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1288)
Q Consensus 477 kl~~s~~~s~~~lWd~~~~~~~~~~~~~-~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~ 555 (1288)
++...+.++++++|+..+. ..... +.+|.+.|.++.+.....+ +++|+.|.++++|+
T Consensus 220 ~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~~----lvsgS~D~t~rvWd-------------- 277 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGDK----LVSGSTDKTERVWD-------------- 277 (537)
T ss_pred eEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCCE----EEEEecCCcEEeEe--------------
Confidence 3455677788899998765 34444 8999999999888775555 99999999999944
Q ss_pred ccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCC
Q 000781 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1288)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~ 635 (1288)
+.++++.+++.||.+.|.|+...+ .++++||.|.+|++||+.++.+++.+.+|.++|+++.+.
T Consensus 278 -~~sg~C~~~l~gh~stv~~~~~~~-----------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----- 340 (537)
T KOG0274|consen 278 -CSTGECTHSLQGHTSSVRCLTIDP-----------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----- 340 (537)
T ss_pred -cCCCcEEEEecCCCceEEEEEccC-----------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----
Confidence 678999999999999999998742 688999999999999999999999999999999999997
Q ss_pred CCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEE
Q 000781 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1288)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~ 714 (1288)
+..+++|+.|++|++||+.+++|+..+.||..+|+++.+.+. .++++|+.| ++|++||++++ +++++
T Consensus 341 ---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D--------~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 ---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD--------TTIKVWDLRTKRKCIHT 408 (537)
T ss_pred ---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec--------cceEeecCCchhhhhhh
Confidence 469999999999999999999999999999999999998866 788876554 89999999999 99999
Q ss_pred EeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCccccccc
Q 000781 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVA 773 (1288)
Q Consensus 715 l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~~~~~ 773 (1288)
+.+|.+-+....+ -....+++.+ |++||+|+....+....
T Consensus 409 l~~h~~~v~~l~~--------------~~~~Lvs~~a-----D~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 409 LQGHTSLVSSLLL--------------RDNFLVSSSA-----DGTIKLWDAEEGECLRT 448 (537)
T ss_pred hcCCccccccccc--------------ccceeEeccc-----cccEEEeecccCceeee
Confidence 9999987733211 1234444445 99999998765544433
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=5.8e-21 Score=209.57 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=173.1
Q ss_pred CCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEE
Q 000781 498 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1288)
Q Consensus 498 ~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~ 577 (1288)
+..+...+++|.+.|.|+++-+.+.| +++|+.|++|.|| |+.+++...++.||...|..++
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~w----f~tgs~DrtikIw---------------Dlatg~LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEW----FATGSADRTIKIW---------------DLATGQLKLTLTGHIETVRGVA 200 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCcee----EEecCCCceeEEE---------------EcccCeEEEeecchhheeeeee
Confidence 34677778999999999999999999 9999999999994 4779999999999999999999
Q ss_pred EeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 578 ~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
+++.| .++++++.|+.|+.||+...+.++.+.||-..|.|+...|. -+.+++|+.|.++||||+|
T Consensus 201 vS~rH---------pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiR 265 (460)
T KOG0285|consen 201 VSKRH---------PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIR 265 (460)
T ss_pred ecccC---------ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeec
Confidence 96422 79999999999999999999999999999999999999998 7899999999999999999
Q ss_pred CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeee
Q 000781 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 658 t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
+...+..+.||.+.|..|.+.|.+..+++|+.| ++|++||++.|+...++..|...|.+....
T Consensus 266 tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D--------~tvrlWDl~agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 266 TRASVHVLSGHTNPVASVMCQPTDPQVITGSHD--------STVRLWDLRAGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred ccceEEEecCCCCcceeEEeecCCCceEEecCC--------ceEEEeeeccCceeEeeecccceeeEEecC
Confidence 999999999999999999999999999986654 899999999999999999998888766544
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.1e-20 Score=220.60 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=135.0
Q ss_pred CceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCccc
Q 000781 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1288)
Q Consensus 16 ~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~ 95 (1288)
+.+|..++|.|..+.|.|+=.+|.|.+||..- .+.+..+.+|.+||.++.|
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~F------------------------ 59 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVDF------------------------ 59 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceeee------------------------
Confidence 56899999999999999999999999999985 4667788999999999966
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccc
Q 000781 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1288)
Q Consensus 96 ~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~ 175 (1288)
.+++.+++||+.|..|+||+..+-+|+.+...| --.|++..-...|-++..+.
T Consensus 60 ---H~~qplFVSGGDDykIkVWnYk~rrclftL~GH-----lDYVRt~~FHheyPWIlSAS------------------- 112 (1202)
T KOG0292|consen 60 ---HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH-----LDYVRTVFFHHEYPWILSAS------------------- 112 (1202)
T ss_pred ---cCCCCeEEecCCccEEEEEecccceehhhhccc-----cceeEEeeccCCCceEEEcc-------------------
Confidence 678999999999999999999999999776544 23344443334455565555
Q ss_pred ccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCC
Q 000781 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1288)
Q Consensus 176 ~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~ 251 (1288)
++.+|+||+..+.+.+.++.+ |...|.|..|... ++.++++|-|-++||||+.+.
T Consensus 113 ------------DDQTIrIWNwqsr~~iavltG---HnHYVMcAqFhpt------EDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 113 ------------DDQTIRIWNWQSRKCIAVLTG---HNHYVMCAQFHPT------EDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred ------------CCCeEEEEeccCCceEEEEec---CceEEEeeccCCc------cceEEEecccceEEEEeecch
Confidence 678999999999999999999 8888999999854 679999999999999999974
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=229.31 Aligned_cols=230 Identities=19% Similarity=0.279 Sum_probs=187.7
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
+..+.++++|....... .+...+.+|...|+.+.|.++..+ +++|+.|++|++|+.. ..+
T Consensus 177 ~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~----l~s~s~D~tiriwd~~--------------~~~ 236 (456)
T KOG0266|consen 177 ASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSY----LLSGSDDKTLRIWDLK--------------DDG 236 (456)
T ss_pred ccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcE----EEEecCCceEEEeecc--------------CCC
Confidence 34556677777744332 244455889999999999888887 9999999999995531 345
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
.++++++||...|+|++|+ |+| ++++||+.|++|++||+++++++..+.+|.++|++++|+++ ++
T Consensus 237 ~~~~~l~gH~~~v~~~~f~-----p~g----~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d------~~ 301 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFS-----PDG----NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD------GN 301 (456)
T ss_pred eEEEEecCCCCceEEEEec-----CCC----CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC------CC
Confidence 6899999999999999995 677 99999999999999999999999999999999999999999 89
Q ss_pred EEEEEECCCcEEEEECCCce--eEEEecCCCCC--cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 641 CFLSVGEDFSVALASLETLR--VERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~t~~--~l~~l~gH~~~--V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
.+++++.|+.|++||+.++. ++..+.++... +++++|+|++.|+++++. |+++++||++.+.+.+.+.
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~--------d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL--------DRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC--------CCeEEEEEccCCcceeeec
Confidence 99999999999999999999 77888888766 899999999999997554 3899999999999999999
Q ss_pred CCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCc
Q 000781 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1288)
Q Consensus 717 GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~ 767 (1288)
+|...+ ...++... ...| .+ ++.-+.|+.+.+|++..
T Consensus 374 ~~~~~~-~~~~~~~~---~~~~-----~~-----i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 374 GHSNLV-RCIFSPTL---STGG-----KL-----IYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ccCCcc-eeEecccc---cCCC-----Ce-----EEEEeCCceEEEEeCCc
Confidence 999874 22232211 1111 22 33344599999998753
No 42
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=197.73 Aligned_cols=204 Identities=17% Similarity=0.293 Sum_probs=173.5
Q ss_pred ccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000781 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1288)
Q Consensus 477 kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d 556 (1288)
++...+....++++|+...+| ....+|.+|.+.|+++.|-.+.++ +++|++||+++||+
T Consensus 53 ~~LAaa~~qhvRlyD~~S~np--~Pv~t~e~h~kNVtaVgF~~dgrW----MyTgseDgt~kIWd--------------- 111 (311)
T KOG0315|consen 53 KDLAAAGNQHVRLYDLNSNNP--NPVATFEGHTKNVTAVGFQCDGRW----MYTGSEDGTVKIWD--------------- 111 (311)
T ss_pred chhhhccCCeeEEEEccCCCC--CceeEEeccCCceEEEEEeecCeE----EEecCCCceEEEEe---------------
Confidence 456677888999999988776 478899999999999999999999 99999999999955
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-------------------------
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG------------------------- 611 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg------------------------- 611 (1288)
++...+.+ ...|..+|+++..|| +. ..|++|..+|.|++||+...
T Consensus 112 lR~~~~qR-~~~~~spVn~vvlhp-----nQ----teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 112 LRSLSCQR-NYQHNSPVNTVVLHP-----NQ----TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred ccCcccch-hccCCCCcceEEecC-----Cc----ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 33333444 345889999999986 32 57999999999999997632
Q ss_pred ------------------------ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEEec
Q 000781 612 ------------------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFP 666 (1288)
Q Consensus 612 ------------------------~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~l~ 666 (1288)
+++++|+.|.+.+..+.++|+ +++|+++|.|++++||+.++. +....+.
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEee
Confidence 124578889999999999999 899999999999999999988 7778899
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEe
Q 000781 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1288)
Q Consensus 667 gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~ 725 (1288)
+|...++..+|+.|+.||+||+. |+++|+||++.|+.++.+.||....++.
T Consensus 256 gh~rWvWdc~FS~dg~YlvTass--------d~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 256 GHQRWVWDCAFSADGEYLVTASS--------DHTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred cCCceEEeeeeccCccEEEecCC--------CCceeecccccCceeeecCCcccccEEE
Confidence 99999999999999999998544 3899999999999999999998766543
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.86 E-value=8.7e-22 Score=219.57 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=161.7
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCC-cCEEEEEEeecccC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT-GAVLCLAAHRMVGT 584 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~-~~V~~L~~~p~~~S 584 (1288)
+.|...|+++.+..+..+ +++|..+|.|++|+-+ . . .++.+++|. ..|+|++|+|
T Consensus 135 QaHDs~Vr~m~ws~~g~w----miSgD~gG~iKyWqpn--m-----------n---nVk~~~ahh~eaIRdlafSp---- 190 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTW----MISGDKGGMIKYWQPN--M-----------N---NVKIIQAHHAEAIRDLAFSP---- 190 (464)
T ss_pred hhhcccceeEEEccCCCE----EEEcCCCceEEecccc--h-----------h---hhHHhhHhhhhhhheeccCC----
Confidence 689999999999999999 9999999999995432 1 1 345556665 8999999954
Q ss_pred CCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE
Q 000781 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1288)
Q Consensus 585 pdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~ 664 (1288)
+. ..++|+|+|++|+|||....+.-..+.+|.--|.++.|+|. ...++++|.|..|++||.++++|+.+
T Consensus 191 -nD----skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~------kgLiasgskDnlVKlWDprSg~cl~t 259 (464)
T KOG0284|consen 191 -ND----SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT------KGLIASGSKDNLVKLWDPRSGSCLAT 259 (464)
T ss_pred -CC----ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc------cceeEEccCCceeEeecCCCcchhhh
Confidence 43 78999999999999999998888899999999999999998 68999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 665 l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+.+|.+.|..+.|+|++++|++++.| ..++++|+++.+.+++++||...++.+.+.+
T Consensus 260 lh~HKntVl~~~f~~n~N~Llt~skD--------~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 260 LHGHKNTVLAVKFNPNGNWLLTGSKD--------QSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred hhhccceEEEEEEcCCCCeeEEccCC--------ceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 99999999999999999999987665 8999999999999999999999998886665
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=4.4e-20 Score=224.85 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=174.4
Q ss_pred ceecccC-CCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 502 RDDFVHK-EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 502 ~~~~~~h-~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
...+.+| ...|++..|..+..+ +++++.|+.+++|..... +. ...+.+.+|...|.+++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~----l~~~~~~~~i~~~~~~~~------------~~-~~~~~l~~h~~~v~~~~f-- 211 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRA----LAAASSDGLIRIWKLEGI------------KS-NLLRELSGHTRGVSDVAF-- 211 (456)
T ss_pred eeeecccccCceEEEEEcCCCCe----EEEccCCCcEEEeecccc------------cc-hhhccccccccceeeeEE--
Confidence 3444444 788999888888777 999999999999665311 00 256667899999999999
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeC-CCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl-~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~ 659 (1288)
+||| +++++|+.|++|++||+ ..+.+++++.+|...|++++|+|. ++.++||+.|++|+|||++++
T Consensus 212 ---s~d~----~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 212 ---SPDG----SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred ---CCCC----cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------CCEEEEecCCCcEEEEeccCC
Confidence 5788 89999999999999999 566899999999999999999999 899999999999999999999
Q ss_pred eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc--EEEEEeCCCCc--eEEeeeecCcccee
Q 000781 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTASH--SMFDHFCKGISMNS 735 (1288)
Q Consensus 660 ~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~--l~~~l~GH~~~--vi~~~~~~~~~~~~ 735 (1288)
+++..+.+|.+.|++++|++++.+|++++. |+.|+|||+.+++ +...+.++... +..+.|++.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~----- 345 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASY--------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN----- 345 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCC--------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCC-----
Confidence 999999999999999999999999997433 5999999999999 67888888777 666666542
Q ss_pred eecceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 736 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 736 ~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
| .+ ++....|+++|+|+++..
T Consensus 346 --~-----~~-----ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 346 --G-----KY-----LLSASLDRTLKLWDLRSG 366 (456)
T ss_pred --C-----cE-----EEEecCCCeEEEEEccCC
Confidence 2 22 233344999999998643
No 45
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=2e-17 Score=198.01 Aligned_cols=525 Identities=13% Similarity=0.034 Sum_probs=314.9
Q ss_pred EEeCCCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccc
Q 000781 8 CIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1288)
Q Consensus 8 ~lw~~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~ 87 (1288)
+|.-..|-+.+|+|++-.. .+.+++ ....|.+|.-. ....+...+|.+.|.-+
T Consensus 68 ll~vs~~lp~~I~alas~~--~~vy~A-~g~~i~~~~rg------k~i~~~~~~~~a~v~~l------------------ 120 (910)
T KOG1539|consen 68 LLFVSKPLPDKITALASDK--DYVYVA-SGNKIYAYARG------KHIRHTTLLHGAKVHLL------------------ 120 (910)
T ss_pred EEEecCCCCCceEEEEecC--ceEEEe-cCcEEEEEEcc------ceEEEEeccccceEEEE------------------
Confidence 3444467778899988844 355554 34577777665 35667778888888777
Q ss_pred ccccCcccccccCCCCEEEEEeCCCeEEEEECCCCee-----EEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000781 88 AENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHC-----RRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1288)
Q Consensus 88 ~~~~~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c-----~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~ 162 (1288)
-+-|..++++..++.|.||+..+++- ....+.. ..-++.|...++--+...++.
T Consensus 121 -----------~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~--~~~Ital~HP~TYLNKIvvGs-------- 179 (910)
T KOG1539|consen 121 -----------LPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVE--GDFITALLHPSTYLNKIVVGS-------- 179 (910)
T ss_pred -----------eeecceEEEEEccCcEEEEEeccccccccccceeeecc--CCceeeEecchhheeeEEEee--------
Confidence 33468899999999999999987511 1111111 011233332222223333322
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcE
Q 000781 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRL 242 (1288)
Q Consensus 163 ~~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ 242 (1288)
..+.+.+|+..++++++++.. +...|+++-=.+ .-|+++.|..+|.
T Consensus 180 -------------------------~~G~lql~Nvrt~K~v~~f~~---~~s~IT~ieqsP------aLDVVaiG~~~G~ 225 (910)
T KOG1539|consen 180 -------------------------SQGRLQLWNVRTGKVVYTFQE---FFSRITAIEQSP------ALDVVAIGLENGT 225 (910)
T ss_pred -------------------------cCCcEEEEEeccCcEEEEecc---cccceeEeccCC------cceEEEEeccCce
Confidence 457899999999999999998 666677764332 3689999999999
Q ss_pred EEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecC-ce--EEeecCCCcccceeeeee
Q 000781 243 QLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKD-HC--IFRLLGSGSTIGEICFVD 319 (1288)
Q Consensus 243 ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~-~~--i~~~l~~~~~~g~~s~~~ 319 (1288)
+-+.+++.. +.+-....--+.|..++|.+||+.++..++. +. +||+ +..+++...
T Consensus 226 ViifNlK~d-----------------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDL-e~kkl~~v~---- 283 (910)
T KOG1539|consen 226 VIIFNLKFD-----------------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDL-EKKKLINVT---- 283 (910)
T ss_pred EEEEEcccC-----------------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEc-CCCeeeeee----
Confidence 999999973 1222333324678999999999988777766 43 6776 544444322
Q ss_pred cceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCC
Q 000781 320 NLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGV 399 (1288)
Q Consensus 320 s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~ 399 (1288)
.+ .+ ...+.+..|+ .+.. -++..+.|++.++|....++..-
T Consensus 284 --~n--ah--~~sv~~~~fl-~~ep---------------Vl~ta~~DnSlk~~vfD~~dg~p----------------- 324 (910)
T KOG1539|consen 284 --RN--AH--YGSVTGATFL-PGEP---------------VLVTAGADNSLKVWVFDSGDGVP----------------- 324 (910)
T ss_pred --ec--cc--cCCcccceec-CCCc---------------eEeeccCCCceeEEEeeCCCCcc-----------------
Confidence 11 11 1234556677 3331 45566788888888877532210
Q ss_pred eeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccce-eecCcccc-CCCCCcccCc
Q 000781 400 KFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD-WVNNSTFL-DENEGSCTGK 477 (1288)
Q Consensus 400 ~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~-W~~~~~~~-~~~~g~~v~k 477 (1288)
.+++.. .++.+|.. .+++|. .+.+.+.+...+.. |......+ .+. .
T Consensus 325 -----------R~LR~R---~GHs~Pp~---~irfy~---------~~g~~ilsa~~Drt~r~fs~~~e~~~~-~----- 372 (910)
T KOG1539|consen 325 -----------RLLRSR---GGHSAPPS---CIRFYG---------SQGHFILSAKQDRTLRSFSVISESQSQ-E----- 372 (910)
T ss_pred -----------hheeec---cCCCCCch---heeeec---------cCcEEEEecccCcchhhhhhhHHHHhH-h-----
Confidence 111211 12222311 145441 12233444333332 21111100 000 0
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEE-EcCCcEEEEEecccccCCCCCCccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYG-FFSGEIEVIQFDLFERHNSPGASLK 556 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~G-s~DG~I~i~~~d~~~~~~~~~~~~d 556 (1288)
+ ...-.....++.+ ......-.-..|....+-......=+.+++. -.+-..+.|+|.... .+.+-
T Consensus 373 l--------~~~~~~~~~kk~~-~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-----~G~~~ 438 (910)
T KOG1539|consen 373 L--------GQLHNKKRAKKVN-VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-----SGRHV 438 (910)
T ss_pred h--------ccccccccccccc-ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-----cccEE
Confidence 0 0000000000000 0000001112333322211110000012222 223445554443211 00111
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEE---eccCcCEEEEEECCCC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM---HHHVAPVRQIILSPPQ 633 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~---~~H~~~V~~l~~sp~~ 633 (1288)
+++. .++.-...+++++. ++.| ++.+-|...|+|-++++.+|-..++| ..|.++|+.++....
T Consensus 439 L~~~----~~~~~~~~~~av~v-----s~CG----NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~- 504 (910)
T KOG1539|consen 439 LDPK----RFKKDDINATAVCV-----SFCG----NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT- 504 (910)
T ss_pred ecCc----cccccCcceEEEEE-----eccC----ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC-
Confidence 1110 01112367888887 5678 99999999999999999999988888 589999999999766
Q ss_pred CCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 634 ~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
++.++|++.||-+++||..++..+..+.- ...+.++..+.....++.++.| -.|++.|..|.+.+|
T Consensus 505 -----n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~dd--------f~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 505 -----NRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDD--------FSIRVVDVVTRKVVR 570 (910)
T ss_pred -----CceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCc--------eeEEEEEchhhhhhH
Confidence 78999999999999999999887777753 2467888888888888875543 799999999999999
Q ss_pred EEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 714 ~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
.+.||.++++...|++ +| .|.++..+ |++||.||+.
T Consensus 571 ~f~gh~nritd~~FS~-------Dg-----rWlisasm-----D~tIr~wDlp 606 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSP-------DG-----RWLISASM-----DSTIRTWDLP 606 (910)
T ss_pred HhhccccceeeeEeCC-------CC-----cEEEEeec-----CCcEEEEecc
Confidence 9999999999887764 33 36666666 9999999974
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.84 E-value=1.2e-20 Score=210.63 Aligned_cols=216 Identities=15% Similarity=0.196 Sum_probs=172.3
Q ss_pred ccccccccCCCCCCCcceecccCC-CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEE
Q 000781 486 TVPRSEHVDSRQAGDGRDDFVHKE-KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1288)
Q Consensus 486 ~~~lWd~~~~~~~~~~~~~~~~h~-~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~ 564 (1288)
.+++|+..-+ .+..++.|. ..|++++|.+.... +++++.||.|+||++. ..+..+
T Consensus 161 ~iKyWqpnmn-----nVk~~~ahh~eaIRdlafSpnDsk----F~t~SdDg~ikiWdf~---------------~~kee~ 216 (464)
T KOG0284|consen 161 MIKYWQPNMN-----NVKIIQAHHAEAIRDLAFSPNDSK----FLTCSDDGTIKIWDFR---------------MPKEER 216 (464)
T ss_pred eEEecccchh-----hhHHhhHhhhhhhheeccCCCCce----eEEecCCCeEEEEecc---------------CCchhh
Confidence 3555554322 334454454 89999888775554 8999999999997654 333567
Q ss_pred EEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEE
Q 000781 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1288)
Q Consensus 565 ~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~S 644 (1288)
.|.||.-.|.|++|||. +.+++|||.|..|++||.++|.|+.++.+|...|..+.|+|+ +++|++
T Consensus 217 vL~GHgwdVksvdWHP~---------kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n------~N~Llt 281 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPT---------KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN------GNWLLT 281 (464)
T ss_pred eeccCCCCcceeccCCc---------cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC------CCeeEE
Confidence 88999999999999973 259999999999999999999999999999999999999999 899999
Q ss_pred EECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE-EEeCCCCceE
Q 000781 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER-VLRGTASHSM 723 (1288)
Q Consensus 645 gs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~-~l~GH~~~vi 723 (1288)
+|.|.+++++|+++.+.++.+++|...|+++.|+|-..-|++ +++.||.|..|.+..-+.+- .-.+|...|.
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft-------sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iw 354 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT-------SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIW 354 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee-------eccCCCceEEEeccccccccCCCccccccee
Confidence 999999999999999999999999999999999997665553 33335999999998544443 3458888888
Q ss_pred EeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 724 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 724 ~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
.+.|.+ +.-..++|+ .|.++|.|.
T Consensus 355 sl~~hP-lGhil~tgs----------------nd~t~rfw~ 378 (464)
T KOG0284|consen 355 SLAYHP-LGHILATGS----------------NDRTVRFWT 378 (464)
T ss_pred eeeccc-cceeEeecC----------------CCcceeeec
Confidence 887765 222233444 399999995
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=1.3e-19 Score=200.96 Aligned_cols=274 Identities=19% Similarity=0.185 Sum_probs=204.6
Q ss_pred CeEEEEecccCCCCCCcceeEEeecCccce----eecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceec
Q 000781 430 PYISVWSLSQKHSGPGKQCRMVGEGFSFVD----WVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDF 505 (1288)
Q Consensus 430 p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~----W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~ 505 (1288)
..+++|+..++. ..++.|...-. |.++... . ..+..++.+.++.+|..............-
T Consensus 125 g~~riWd~~Gk~-------~~~~~Ght~~ik~v~~v~~n~~------~--~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~ 189 (423)
T KOG0313|consen 125 GTSRIWDLKGKS-------IKTIVGHTGPIKSVAWVIKNSS------S--CLFVSASMDQTLRLWKWNVGENKVKALKVC 189 (423)
T ss_pred CeeEEEecCCce-------EEEEecCCcceeeeEEEecCCc------c--ceEEEecCCceEEEEEecCchhhhhHHhHh
Confidence 348899776653 44444432211 6665321 0 146777889999999988776554444455
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEeccccc-CCCCC---------CccccCCceeEEEEecCCcCEEE
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER-HNSPG---------ASLKVNSHVSRQYFLGHTGAVLC 575 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~-~~~~~---------~~~d~~t~~~~~~l~gH~~~V~~ 575 (1288)
+||...|-++....+... +++|+.|..+.+|....... ..... ......++.++-++.||+.+|.+
T Consensus 190 ~GHk~~V~sVsv~~sgtr----~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~ 265 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTR----FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS 265 (423)
T ss_pred cccccceeEEEecCCCCe----EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence 699999999887777776 99999999999977211111 11100 00123355688899999999999
Q ss_pred EEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 576 L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
+.|++ . ..+.|+|.|.+|+.||+.+|.+..++.+ ...++|+..+|. .+++++||.|..+++||
T Consensus 266 V~w~d------~----~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~------~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 266 VVWSD------A----TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPL------SKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEEcC------C----CceEeecccceEEEEEeecccceeeeec-CcceeEeecccc------cceeeecCCCCceeecC
Confidence 99952 2 6899999999999999999998888765 457999999998 78999999999999999
Q ss_pred CCCce---eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc-EEEEEeCCCCceEEeeeecCc
Q 000781 656 LETLR---VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGI 731 (1288)
Q Consensus 656 l~t~~---~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~-l~~~l~GH~~~vi~~~~~~~~ 731 (1288)
.|++. ..++|.||.+.|.++.|+|...|+++ ++.-|+++++||.|+.. .+..+.+|.+.|.++.+....
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~-------S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLV-------SGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEE-------EEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 99763 45889999999999999999887664 23335999999999876 899999999999877665321
Q ss_pred cceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 732 ~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
..+++. .|+++|+..
T Consensus 402 -------------~IvSGG-----aD~~l~i~~ 416 (423)
T KOG0313|consen 402 -------------LIVSGG-----ADNKLRIFK 416 (423)
T ss_pred -------------eEEecc-----CcceEEEec
Confidence 122223 399999884
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.4e-20 Score=193.40 Aligned_cols=222 Identities=19% Similarity=0.183 Sum_probs=188.8
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
...+.++++|+.... .++.++.+|+..|.......++.. +++|+.|..+.+ ||+.+|
T Consensus 35 cGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dnsk----f~s~GgDk~v~v---------------wDV~TG 91 (307)
T KOG0316|consen 35 CGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNSK----FASCGGDKAVQV---------------WDVNTG 91 (307)
T ss_pred cCCCceEEeeccccc----ceeeeecCCCceeeeccccccccc----cccCCCCceEEE---------------EEcccC
Confidence 445678999987654 688999999999998887777776 899999999999 347899
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCC--CceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t--g~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
+..+.++||.+.|+.+.|+ .+. ..++|||.|.++++||.++ .++++.+....+.|.++.++
T Consensus 92 kv~Rr~rgH~aqVNtV~fN-----ees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-------- 154 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFN-----EES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-------- 154 (307)
T ss_pred eeeeecccccceeeEEEec-----Ccc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--------
Confidence 9999999999999999995 233 7999999999999999975 46899999999999999987
Q ss_pred CCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC
Q 000781 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH 718 (1288)
++.|++||.||++|.||+|.|+....+-|| +|+++.|+++++..+.++.| +++++-|-+||++++.+.||
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLD--------STLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeecc--------ceeeecccchhHHHHHhccc
Confidence 468999999999999999999998888777 79999999999999987765 89999999999999999999
Q ss_pred CCceEEeeeecCcc-ceeeecceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 719 ASHSMFDHFCKGIS-MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 719 ~~~vi~~~~~~~~~-~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
......+..|-..+ ....+| ++||.+-.|++-+.
T Consensus 225 kn~eykldc~l~qsdthV~sg----------------SEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSG----------------SEDGKVYFWDLVDE 259 (307)
T ss_pred ccceeeeeeeecccceeEEec----------------cCCceEEEEEeccc
Confidence 99998876664222 123333 36999999997543
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.8e-19 Score=200.89 Aligned_cols=103 Identities=19% Similarity=0.334 Sum_probs=81.9
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEE--EEeecccCCCCCccCcEEEEEECCCcEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL--AAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L--~~~p~~~SpdG~~~~~~L~SGs~D~tI~v 605 (1288)
.+..-.+.++.+|+ ++..+.++.+.||+..-.-+ +|- ..++.+++|||+|+.|+|
T Consensus 410 ~LvnL~~qei~LWD---------------l~e~~lv~kY~Ghkq~~fiIrSCFg--------g~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWD---------------LEENKLVRKYFGHKQGHFIIRSCFG--------GGNDKFIASGSEDSKVYI 466 (519)
T ss_pred EEEEcccCeeEEee---------------cchhhHHHHhhcccccceEEEeccC--------CCCcceEEecCCCceEEE
Confidence 33444566777743 55666788888998654333 331 234589999999999999
Q ss_pred EeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC
Q 000781 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1288)
Q Consensus 606 WDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t 658 (1288)
|+..+|+++.++.||...|+||+|+|.. ...+||+|+||+||||.+..
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~-----p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPAD-----PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCC-----HHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999999984 46899999999999998753
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.5e-20 Score=220.20 Aligned_cols=222 Identities=20% Similarity=0.184 Sum_probs=184.3
Q ss_pred cccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCce
Q 000781 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1288)
Q Consensus 482 ~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~ 561 (1288)
--.+.+++||..-. .++..|.+|.++|..+.|-+.+.+ +++|+.|-.|+||.+ ++.+
T Consensus 28 lHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qpl----FVSGGDDykIkVWnY---------------k~rr 84 (1202)
T KOG0292|consen 28 LHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQPL----FVSGGDDYKIKVWNY---------------KTRR 84 (1202)
T ss_pred ecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCCe----EEecCCccEEEEEec---------------ccce
Confidence 34677899997654 578899999999999988888888 999999999999664 4677
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
++.+|.||-..|..+.||+. - .|++|+|+|-||+||+..+++++..+.||...|.|..|+|. .+.
T Consensus 85 clftL~GHlDYVRt~~FHhe-----y----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt------EDl 149 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHE-----Y----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT------EDL 149 (1202)
T ss_pred ehhhhccccceeEEeeccCC-----C----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc------cce
Confidence 99999999999999999852 2 79999999999999999999999999999999999999998 689
Q ss_pred EEEEECCCcEEEEECCCc---------------------------e--eEEEecCCCCCcEEEEEcCCCCEEEEEecCCC
Q 000781 642 FLSVGEDFSVALASLETL---------------------------R--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHS 692 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~---------------------------~--~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~s 692 (1288)
++|+|-|.+|||||+... . ..+.+.||...|+-++|+|+-..+++|
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG----- 224 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG----- 224 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec-----
Confidence 999999999999997421 1 124578999999999999999999954
Q ss_pred cccCCCCeEEEEECCCCc--EEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 693 RTSDAVDVLFIWDVKTGA--RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 693 gssD~DgtV~VWDl~tg~--l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
+| |..|++|.+..-+ .+.+.+||..+|.++.|.+... ..++..+|.++|+||..
T Consensus 225 --~D-DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-----------------lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 225 --AD-DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-----------------LILSNSEDKSIRVWDMT 280 (1202)
T ss_pred --CC-cceeeEEEeccccceeehhhhcccCCcceEEecCccc-----------------eeEecCCCccEEEEecc
Confidence 33 6999999986533 3567899999998887765321 23334458888888763
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.83 E-value=1.2e-18 Score=192.68 Aligned_cols=330 Identities=16% Similarity=0.203 Sum_probs=242.4
Q ss_pred cceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeeccccc
Q 000781 268 LDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAE 345 (1288)
Q Consensus 268 ~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~ 345 (1288)
...+..+..|...+-++++.|+++.+++.+.|.- +|+. .++..+.++ ..+ ...++...|..++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~-~~ge~~~el---------tgH--KDSVt~~~Fshdgt-- 119 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDI-STGEFAGEL---------TGH--KDSVTCCSFSHDGT-- 119 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEc-cCCcceeEe---------cCC--CCceEEEEEccCce--
Confidence 3456678899999999999999999999888877 7777 444333333 222 35566777763333
Q ss_pred ccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeeeecccccc
Q 000781 346 KIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEET 425 (1288)
Q Consensus 346 ~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~ 425 (1288)
.+++++-+|.++||+.+.+...... ...+ +.
T Consensus 120 --------------lLATGdmsG~v~v~~~stg~~~~~~---------------------------~~e~--------~d 150 (399)
T KOG0296|consen 120 --------------LLATGDMSGKVLVFKVSTGGEQWKL---------------------------DQEV--------ED 150 (399)
T ss_pred --------------EEEecCCCccEEEEEcccCceEEEe---------------------------eccc--------Cc
Confidence 7888899999999998873111000 0000 11
Q ss_pred ccccCeEEEEecccCCCCCCcceeEEeecCccce---eecCccccCCCCCcccCccccccccCccccccccCCCCCCCcc
Q 000781 426 SQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD---WVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGR 502 (1288)
Q Consensus 426 l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~---W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~ 502 (1288)
+. -..| +. ...+++.|..+|. |.+|.. ...
T Consensus 151 ie----Wl~W--Hp-------~a~illAG~~DGsvWmw~ip~~----------------------------------~~~ 183 (399)
T KOG0296|consen 151 IE----WLKW--HP-------RAHILLAGSTDGSVWMWQIPSQ----------------------------------ALC 183 (399)
T ss_pred eE----EEEe--cc-------cccEEEeecCCCcEEEEECCCc----------------------------------cee
Confidence 11 1234 22 3468888988888 666521 245
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCC-cCEEEEEEeec
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT-GAVLCLAAHRM 581 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~-~~V~~L~~~p~ 581 (1288)
+.|.+|+..+++-.|+++.+. +++|..||+|++| ++++++++..+.+-. ..-.|+.++
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr----~~tgy~dgti~~W---------------n~ktg~p~~~~~~~e~~~~~~~~~~-- 242 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKR----ILTGYDDGTIIVW---------------NPKTGQPLHKITQAEGLELPCISLN-- 242 (399)
T ss_pred eEecCCCCCcccccccCCCce----EEEEecCceEEEE---------------ecCCCceeEEecccccCcCCccccc--
Confidence 678899999999777777665 9999999999993 377888888887433 456778773
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEe--------ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEE
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~--------~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~l 653 (1288)
.+| ..+++|+.|+.+++-+..+|+.+..+. .|...+.|+.+.|-... -.+.|+|+-||+|.|
T Consensus 243 ---~~~----~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~---lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 243 ---LAG----STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK---LPLAACGSVDGTIAI 312 (399)
T ss_pred ---ccc----ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc---cchhhcccccceEEE
Confidence 455 899999999999999999999888877 56677778887775221 357899999999999
Q ss_pred EECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccc
Q 000781 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 733 (1288)
Q Consensus 654 Wdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~ 733 (1288)
||+...+..+.+. |...|+.+.|-+ ..||+++|.| |.||.||.|||+++.+++||+..|....+.+.
T Consensus 313 yD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~--------g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~--- 379 (399)
T KOG0296|consen 313 YDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACAN--------GKVRQWDARTGQLKFTYTGHQMGILDFALSPQ--- 379 (399)
T ss_pred Eecccchhheecc-CCCceEEEEEcC-cchheeeccC--------ceEEeeeccccceEEEEecCchheeEEEEcCC---
Confidence 9999888777666 888999999998 7889987765 99999999999999999999999976544431
Q ss_pred eeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 734 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 734 ~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
...++.++.|++.|++..
T Consensus 380 --------------~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 380 --------------KRLVVTVSDDNTALVFEV 397 (399)
T ss_pred --------------CcEEEEecCCCeEEEEec
Confidence 123455556999999864
No 52
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=5.7e-18 Score=198.25 Aligned_cols=183 Identities=13% Similarity=0.166 Sum_probs=142.6
Q ss_pred ccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcee
Q 000781 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~ 562 (1288)
.+.+++++|...+ ..+.+++.+|...|+++.|..+.... .+++.+.|..|....++....
T Consensus 524 rdRlIHV~Dv~rn---y~l~qtld~HSssITsvKFa~~gln~--~MiscGADksimFr~~qk~~~--------------- 583 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKFACNGLNR--KMISCGADKSIMFRVNQKASS--------------- 583 (1080)
T ss_pred CCceEEEEecccc---cchhhhhcccccceeEEEEeecCCce--EEEeccCchhhheehhccccC---------------
Confidence 3445566665543 24677889999999999998776321 267777888887644332111
Q ss_pred EEEEecC-----CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec---cCcCEEEEEECCCCC
Q 000781 563 RQYFLGH-----TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQT 634 (1288)
Q Consensus 563 ~~~l~gH-----~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~---H~~~V~~l~~sp~~~ 634 (1288)
...+..| ...++.++.. |.. .++++++.|+.|+|||+.+|+..+.|++ |.+....+...|.
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vd-----p~~----k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS-- 652 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVD-----PTS----KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS-- 652 (1080)
T ss_pred ceeccccccccccceEEEeeeC-----CCc----ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC--
Confidence 1111111 2457788884 455 8999999999999999999999999986 6678888999998
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
|.++++.+.|+++.++|.-+++|+..+.||...|+.+.|.+|-++|++.+ + ||.|.||.+..
T Consensus 653 ----giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs------g--DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 ----GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS------G--DGCIFVWKLPL 714 (1080)
T ss_pred ----ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec------C--CceEEEEECch
Confidence 89999999999999999999999999999999999999999999999633 3 49999999853
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.83 E-value=9.8e-18 Score=185.12 Aligned_cols=217 Identities=22% Similarity=0.274 Sum_probs=173.3
Q ss_pred CccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEE
Q 000781 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1288)
Q Consensus 485 s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~ 564 (1288)
+.+.+|+.... +....+..|...|.++.+.++..+ +++++.+|.+.+|+ +.+++...
T Consensus 73 ~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~i~~~~---------------~~~~~~~~ 129 (289)
T cd00200 73 KTIRLWDLETG----ECVRTLTGHTSYVSSVAFSPDGRI----LSSSSRDKTIKVWD---------------VETGKCLT 129 (289)
T ss_pred CeEEEEEcCcc----cceEEEeccCCcEEEEEEcCCCCE----EEEecCCCeEEEEE---------------CCCcEEEE
Confidence 34455555432 234455678888999877776444 66666699999954 44566778
Q ss_pred EEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEE
Q 000781 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1288)
Q Consensus 565 ~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~S 644 (1288)
.+.+|.+.|+++.|+ |++ .++++++.|+.|++||+.+++.+..+..|.+.|.++.|+|+ +..+++
T Consensus 130 ~~~~~~~~i~~~~~~-----~~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~ 194 (289)
T cd00200 130 TLRGHTDWVNSVAFS-----PDG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------GEKLLS 194 (289)
T ss_pred EeccCCCcEEEEEEc-----CcC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC------cCEEEE
Confidence 888999999999995 455 88898888999999999999999999999999999999999 778999
Q ss_pred EECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEE
Q 000781 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1288)
Q Consensus 645 gs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~ 724 (1288)
++.|+.|++||+++++.+..+..|...+.+++|+|++.++++++ .|+.|++||+++++....+.+|...+..
T Consensus 195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~i~i~~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS--------EDGTIRVWDLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc--------CCCcEEEEEcCCceeEEEccccCCcEEE
Confidence 99999999999999999999988998999999999988887533 2489999999999999999999988877
Q ss_pred eeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 725 DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 725 ~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
..+.+. + ..++....|+++++|+
T Consensus 267 ~~~~~~-------~----------~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWSPD-------G----------KRLASGSADGTIRIWD 289 (289)
T ss_pred EEECCC-------C----------CEEEEecCCCeEEecC
Confidence 766542 1 1223334588999984
No 54
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=9e-19 Score=213.59 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=164.9
Q ss_pred ecccCCCcEEEEEeee-cCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 504 DFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is-~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
.+.+|.+.|+++.|.+ +..+ +++|+.||.|++|+...... .....+++..+.+|...|.+++|+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~----LaSgS~DgtIkIWdi~~~~~--------~~~~~~~l~~L~gH~~~V~~l~f~P-- 135 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQK----LFTASEDGTIMGWGIPEEGL--------TQNISDPIVHLQGHTKKVGIVSFHP-- 135 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCE----EEEEeCCCEEEEEecCCCcc--------ccccCcceEEecCCCCcEEEEEeCc--
Confidence 3578999999987766 3334 99999999999977542110 0011236778999999999999975
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeE
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l 662 (1288)
++ .++|+||+.|++|++||+.+++.+..+.+|.+.|++++|+|+ +.+|++++.|++|++||+++++.+
T Consensus 136 ---~~---~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 136 ---SA---MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred ---CC---CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEE
Confidence 32 269999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred EEecCCCCCc-EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc-EEEEEeCCCCceEEeeeecCccceeeecce
Q 000781 663 RMFPGHPNYP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1288)
Q Consensus 663 ~~l~gH~~~V-~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~-l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi 740 (1288)
..+.+|.+.+ ..+.|.+++..+++++.+ ...|+.|++||+++.. .......|....+...++.. ++.
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s----~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~------d~~- 272 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCS----KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE------DTN- 272 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecC----CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC------CCC-
Confidence 9999997654 578899998888876543 2236899999998754 44444444433333222211 111
Q ss_pred eeCcccccCCceee-ccCCcEEEEeCCcc
Q 000781 741 LNGNTSVSSLLLPI-HEDGTFRQSQIQND 768 (1288)
Q Consensus 741 ~~w~~~~s~~l~~~-~~D~tvr~w~~~~~ 768 (1288)
.++.. ..|++||+|++.+.
T Consensus 273 ---------~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 273 ---------LLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ---------EEEEEEeCCCeEEEEEeeCC
Confidence 11111 23999999998653
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=213.38 Aligned_cols=218 Identities=19% Similarity=0.321 Sum_probs=177.3
Q ss_pred cccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000781 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t 559 (1288)
+.+.+.++++|+... |+....+.+|...|.++ ...+..++.|+.|.+|++|+ +++
T Consensus 266 sgS~D~t~rvWd~~s----g~C~~~l~gh~stv~~~------~~~~~~~~sgs~D~tVkVW~---------------v~n 320 (537)
T KOG0274|consen 266 SGSTDKTERVWDCST----GECTHSLQGHTSSVRCL------TIDPFLLVSGSRDNTVKVWD---------------VTN 320 (537)
T ss_pred EEecCCcEEeEecCC----CcEEEEecCCCceEEEE------EccCceEeeccCCceEEEEe---------------ccC
Confidence 334567788888544 36778889999999992 33333478889999999955 557
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
+..++.+.||.++|+|+..+ + .++++|+.|++|++||+.++++++++.+|++.|.++.+.+.
T Consensus 321 ~~~l~l~~~h~~~V~~v~~~-------~----~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~------- 382 (537)
T KOG0274|consen 321 GACLNLLRGHTGPVNCVQLD-------E----PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE------- 382 (537)
T ss_pred cceEEEeccccccEEEEEec-------C----CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-------
Confidence 78999999999999999983 3 89999999999999999999999999999999999988752
Q ss_pred CEEEEEECCCcEEEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC-
Q 000781 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG- 717 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G- 717 (1288)
..+++|+.|++|++||++++ +|+.++.+|...|..+.+. +++|++++. |++|++||.+++++++++.+
T Consensus 383 ~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~a--------D~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSA--------DGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccc--------cccEEEeecccCceeeeeccC
Confidence 68999999999999999999 9999999999888766654 678885433 48999999999999999999
Q ss_pred CCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 718 H~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
|...+.++.+. ...++....|+++++|+++...
T Consensus 453 ~~~~v~~l~~~-------------------~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 453 HVGGVSALALG-------------------KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred CcccEEEeecC-------------------cceEEEEecCCeeEEEecccCc
Confidence 66777655332 1123444569999999987543
No 56
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-19 Score=194.39 Aligned_cols=250 Identities=19% Similarity=0.194 Sum_probs=195.5
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
++...|.+|.+.|..+..-..... +-+++.|.+-.|| .+++++|+.++.||.+.|+|+.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi----~gtASADhTA~iW---------------s~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPI----CGTASADHTARIW---------------SLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred eehhhhcccccceeeehhhcCCcc----eeecccccceeEE---------------eeccccceeeecccccceeeEEec
Confidence 567778999999998555444444 7777888888884 378999999999999999999997
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCC------C------------------------------C----ceEEEEec
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------S------------------------------G----NLITVMHH 619 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~------t------------------------------g----~~l~~~~~ 619 (1288)
+ .| .+++++|.|.+..||... . + .++..|.+
T Consensus 200 ~-----s~----~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 200 N-----SG----LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred c-----cc----ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 4 55 899999999999999621 0 0 14668999
Q ss_pred cCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCC
Q 000781 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1288)
Q Consensus 620 H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~Dg 699 (1288)
|.+.|.+..|... |+.+++++.|++..+||++++++++.+.||....+.++-+|..+++++.+. |.
T Consensus 271 H~~vV~a~dWL~g------g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr--------Dt 336 (481)
T KOG0300|consen 271 HRAVVSACDWLAG------GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR--------DT 336 (481)
T ss_pred cccceEehhhhcC------cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc--------Cc
Confidence 9999999999987 899999999999999999999999999999999999999999999887544 48
Q ss_pred eEEEEECCC-CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCcccccccccccC
Q 000781 700 VLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTIS 778 (1288)
Q Consensus 700 tV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~~~~~~~~~~ 778 (1288)
+.++||++. -+.+..|+||+..|+...|..+. .+++|+ .|.|+|+|++++++...+.....
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgS----------------DDrTvKvWdLrNMRsplATIRtd 398 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGS----------------DDRTVKVWDLRNMRSPLATIRTD 398 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecCC--ceeecC----------------CCceEEEeeeccccCcceeeecC
Confidence 999999984 35678999999999998886421 233443 49999999999887655444432
Q ss_pred CCc-ccccccCCCCCCCCCCcccccccccccccCCCCCCcEEEEeecccc
Q 000781 779 EPS-ASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASL 827 (1288)
Q Consensus 779 ~p~-~~~~~~g~~~~~~~~s~~~~~~~~~~ik~~~~~~~~~il~fDle~l 827 (1288)
.|- ...+.+|+ || .+-|.++.++.+|||...
T Consensus 399 S~~NRvavs~g~-----------------~i-IAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 399 SPANRVAVSKGH-----------------PI-IAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CccceeEeecCC-----------------ce-EEeccCCceEEEEecCCC
Confidence 221 11111111 22 133679999999999866
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.81 E-value=2.4e-19 Score=204.25 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=138.1
Q ss_pred CCCceEEEEEEeC-CCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccC
Q 000781 14 PPSHRVTATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1288)
Q Consensus 14 ~p~h~VTala~sp-dg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~ 92 (1288)
.++.-|+|+.|.| .+.+|++|+.||.|+||++.. ....++++.||+.+|.+++|
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~~--------------------- 266 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDASF--------------------- 266 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEec----Ccceehhhhcchhhhhhhhc---------------------
Confidence 4566799999999 789999999999999999984 25678899999999999954
Q ss_pred cccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccc
Q 000781 93 NVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVE 172 (1288)
Q Consensus 93 ~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~ 172 (1288)
+.++..|+|+|-|+.|++||.++|+|+.+..+. ..|..+.+.|.+++ .+++.+
T Consensus 267 ------s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n--~fl~G~---------------- 319 (503)
T KOG0282|consen 267 ------NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHPDNQN--IFLVGG---------------- 319 (503)
T ss_pred ------cccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCCCCCc--EEEEec----------------
Confidence 677999999999999999999999999998886 56677776666533 333444
Q ss_pred cccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCC
Q 000781 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1288)
Q Consensus 173 g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~ 251 (1288)
.+.+|+-||..++++++.... |.++|..+.|+.. +..+++.+.|+.++||....+
T Consensus 320 ---------------sd~ki~~wDiRs~kvvqeYd~---hLg~i~~i~F~~~------g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 320 ---------------SDKKIRQWDIRSGKVVQEYDR---HLGAILDITFVDE------GRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred ---------------CCCcEEEEeccchHHHHHHHh---hhhheeeeEEccC------CceEeeeccCccEEEEEcCCC
Confidence 578999999999999999998 8999999999853 458999999999999998864
No 58
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=2.3e-15 Score=171.96 Aligned_cols=488 Identities=13% Similarity=0.086 Sum_probs=284.7
Q ss_pred CCCCceEEEEEEeCCCCeEEEEeCCC--------CEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccc
Q 000781 13 TPPSHRVTATSALTQPPTLYTGGSDG--------SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAE 84 (1288)
Q Consensus 13 ~~p~h~VTala~spdg~~LaTGs~DG--------~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~ 84 (1288)
..|+..|.|+++.||.-+++||-..| .+++||..+ ...++.+..-...|+|++|+..
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-----L~TL~V~g~f~~GV~~vaFsk~---------- 165 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-----LSTLHVIGFFDRGVTCVAFSKI---------- 165 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-----ceeeeeeccccccceeeeeccc----------
Confidence 36788899999999999999885555 499999775 5566677666778999998553
Q ss_pred cccccccCcccccccCCCCEEEEE--eCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000781 85 HWKAENSSNVMGKSSLDNGALISA--CTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1288)
Q Consensus 85 ~~~~~~~~~~~~~~s~d~~~LvS~--s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~ 162 (1288)
..+.+|... +.+-.|.|||++.+.-.-..+.. .-....+.+++......+.|
T Consensus 166 ---------------~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~FHPtd~nliit~-------- 219 (626)
T KOG2106|consen 166 ---------------NGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS---NEVVFLATFHPTDPNLIITC-------- 219 (626)
T ss_pred ---------------CCCceEEEecCCCccccchhhchhhhccCcceec---cceEEEEEeccCCCcEEEEe--------
Confidence 334444433 45678999999977643222211 11223344444444333333
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEecCCceEEEE--EeccccccCCceEEEEEeccCCCCcceEEEEecCC
Q 000781 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQT--VFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVG 240 (1288)
Q Consensus 163 ~~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~--~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d 240 (1288)
.++++.+|++..+.+.+. +|....+ ..|.|++|... + -++++..+
T Consensus 220 -------------------------Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~en------g-dviTgDS~ 266 (626)
T KOG2106|consen 220 -------------------------GKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLEN------G-DVITGDSG 266 (626)
T ss_pred -------------------------CCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCC------C-CEEeecCC
Confidence 358899999988876655 3442222 33889998753 2 46677778
Q ss_pred cEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeee
Q 000781 241 RLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFV 318 (1288)
Q Consensus 241 ~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~ 318 (1288)
|.|.||+.... +.......|.++|.++....+|..+- ..+|+. .||- .-+.+.+.
T Consensus 267 G~i~Iw~~~~~-----------------~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~--- 323 (626)
T KOG2106|consen 267 GNILIWSKGTN-----------------RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD--NYRKLRET--- 323 (626)
T ss_pred ceEEEEeCCCc-----------------eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccc--cccccccc---
Confidence 89999998653 01112238888999998888886554 777776 3442 11111111
Q ss_pred ecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCC
Q 000781 319 DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSG 398 (1288)
Q Consensus 319 ~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~ 398 (1288)
-+ |.....+-... .+. ..+.|++..+.+.-=.+..+ |+
T Consensus 324 --el-----Pe~~G~iRtv~--e~~---------------~di~vGTtrN~iL~Gt~~~~---f~--------------- 361 (626)
T KOG2106|consen 324 --EL-----PEQFGPIRTVA--EGK---------------GDILVGTTRNFILQGTLENG---FT--------------- 361 (626)
T ss_pred --cC-----chhcCCeeEEe--cCC---------------CcEEEeeccceEEEeeecCC---ce---------------
Confidence 00 00000000000 000 02444444443222111110 00
Q ss_pred CeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCcc
Q 000781 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1288)
Q Consensus 399 ~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl 478 (1288)
.+..|..++-|.....+. + ..+
T Consensus 362 ---------------------------------------------------~~v~gh~delwgla~hps-~------~q~ 383 (626)
T KOG2106|consen 362 ---------------------------------------------------LTVQGHGDELWGLATHPS-K------NQL 383 (626)
T ss_pred ---------------------------------------------------EEEEecccceeeEEcCCC-h------hhe
Confidence 001111111122211000 0 013
Q ss_pred ccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000781 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1288)
Q Consensus 479 ~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~ 558 (1288)
.+...+..+++|+ +.++ .-+ .--..++-|+.|-+.. . ++.|+..|.-.+.+ ++
T Consensus 384 ~T~gqdk~v~lW~--~~k~----~wt-~~~~d~~~~~~fhpsg-~----va~Gt~~G~w~V~d---------------~e 436 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKL----EWT-KIIEDPAECADFHPSG-V----VAVGTATGRWFVLD---------------TE 436 (626)
T ss_pred eeccCcceEEEcc--CCce----eEE-EEecCceeEeeccCcc-e----EEEeeccceEEEEe---------------cc
Confidence 3344455666776 1111 100 1122455564444444 2 89999999888843 44
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-eEEE-EeccCcCEEEEEECCCCCCC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITV-MHHHVAPVRQIILSPPQTEH 636 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-~l~~-~~~H~~~V~~l~~sp~~~~~ 636 (1288)
+...+..-.. +.+++++.| +|+| .+||.|+.|+.|.+|-+.... ...+ =+.|..+|+.+.|++|
T Consensus 437 ~~~lv~~~~d-~~~ls~v~y-----sp~G----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D---- 502 (626)
T KOG2106|consen 437 TQDLVTIHTD-NEQLSVVRY-----SPDG----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD---- 502 (626)
T ss_pred cceeEEEEec-CCceEEEEE-----cCCC----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC----
Confidence 4333333333 789999999 5799 999999999999999987543 2222 2335589999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCc--------------eeEEEe----cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCC
Q 000781 637 PWSDCFLSVGEDFSVALASLETL--------------RVERMF----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1288)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~t~--------------~~l~~l----~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~D 698 (1288)
++++.+.+.|-.|..|....- .|..-| ..|...|..++-+..++.++ ++|..
T Consensus 503 --s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA--------~gdd~ 572 (626)
T KOG2106|consen 503 --SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLA--------SGDDF 572 (626)
T ss_pred --CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhh--------ccccC
Confidence 899999999999999943322 121111 11222344444444455554 67777
Q ss_pred CeEEEEECCC---CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 699 DVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 699 gtV~VWDl~t---g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
|+|+++...- ...-+.+.||.+.+..+.|....+.-+.+| .|.++-+|++
T Consensus 573 g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg-----------------~D~Si~qW~l 625 (626)
T KOG2106|consen 573 GKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG-----------------KDTSIMQWRL 625 (626)
T ss_pred ceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC-----------------CCceEEEEEe
Confidence 9999998643 344578899999999887765444334344 3899999964
No 59
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=2.4e-17 Score=202.34 Aligned_cols=235 Identities=10% Similarity=0.086 Sum_probs=167.4
Q ss_pred cCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeE
Q 000781 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1288)
Q Consensus 484 ~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~ 563 (1288)
.+.+++|+.... .....+.+|.+.|.++.|.+.. ++.+++|+.||.|++|+....... . .....+.
T Consensus 53 ~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~t~~~~------~-~~i~~p~ 118 (568)
T PTZ00420 53 IGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIPHNDES------V-KEIKDPQ 118 (568)
T ss_pred eeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCCcc------c-cccccce
Confidence 345677765543 2456778999999997776542 224999999999999765421100 0 0011255
Q ss_pred EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEE
Q 000781 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1288)
Q Consensus 564 ~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~ 643 (1288)
..+.+|.+.|++++|+| ++ ..+|+||+.|++|++||+.+++.+..+. |...|.++.|+|+ |..|+
T Consensus 119 ~~L~gH~~~V~sVaf~P-----~g---~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd------G~lLa 183 (568)
T PTZ00420 119 CILKGHKKKISIIDWNP-----MN---YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK------GNLLS 183 (568)
T ss_pred EEeecCCCcEEEEEECC-----CC---CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC------CCEEE
Confidence 67899999999999964 55 2467899999999999999999877775 6688999999999 89999
Q ss_pred EEECCCcEEEEECCCceeEEEecCCCCCcEE-----EEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeC
Q 000781 644 SVGEDFSVALASLETLRVERMFPGHPNYPAK-----VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRG 717 (1288)
Q Consensus 644 Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~-----V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~G 717 (1288)
+++.|+.|+|||+++++.+..+.+|.+.+.. ..|++++.+|++++.| ..+ +++|+|||+++ +..+..+..
T Consensus 184 t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~~~--~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 184 GTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--KNN--MREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred EEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--CCC--ccEEEEEECCCCCCceEEEEe
Confidence 9999999999999999999999999876543 2345899999987765 222 36899999995 666666544
Q ss_pred CCCceEE-eeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCc
Q 000781 718 TASHSMF-DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1288)
Q Consensus 718 H~~~vi~-~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~ 767 (1288)
+...-.. -.+... +|. .++....|+++|.|++..
T Consensus 260 d~~~~~L~p~~D~~------tg~----------l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 260 DNASAPLIPHYDES------TGL----------IYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCccceEEeeeCC------CCC----------EEEEEECCCeEEEEEccC
Confidence 4322211 111111 111 122334599999999753
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-17 Score=176.34 Aligned_cols=209 Identities=16% Similarity=0.206 Sum_probs=168.0
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE-ecCCcCEEEEEEe
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAH 579 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~L~~~ 579 (1288)
+.+..++|.++|..+++-+.. ...|++++.|..|++|.... ..+-.+..++ .+|+..|..++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~------------~~s~~ck~vld~~hkrsVRsvAw- 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSS------------GDSWTCKTVLDDGHKRSVRSVAW- 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCC------------CCcEEEEEeccccchheeeeeee-
Confidence 445668899999985554432 11389999999999965331 1122345555 489999999999
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCC--ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg--~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
+|.| ++|++||-|.++.||.-..+ +++.++.||...|.|++|+++ |.+||+++.|++|-||.+.
T Consensus 70 ----sp~g----~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s------G~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 70 ----SPHG----RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS------GNYLATCSRDKSVWIWEID 135 (312)
T ss_pred ----cCCC----cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC------CCEEEEeeCCCeEEEEEec
Confidence 5788 99999999999999987644 588899999999999999999 8999999999999999987
Q ss_pred C---ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC---CCcEEEEEeCCCCceEEeeeecCc
Q 000781 658 T---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGARERVLRGTASHSMFDHFCKGI 731 (1288)
Q Consensus 658 t---~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~---tg~l~~~l~GH~~~vi~~~~~~~~ 731 (1288)
. .+|...++.|...|..|.|+|....|++++.| ++|++|.-. .-++.+++.||...|....|.+
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD--------nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-- 205 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD--------NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-- 205 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccC--------CeEEEEeecCCCCeeEEEEecCccceEEEEEecC--
Confidence 4 47889999999999999999999999976654 899999766 3578999999999887776643
Q ss_pred cceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 732 ~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
.|. .++.+..|+++++|.
T Consensus 206 -----~G~----------rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 206 -----IGS----------RLVSCSDDGTVSIWR 223 (312)
T ss_pred -----CCc----------eEEEecCCcceEeee
Confidence 121 345566799999995
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.79 E-value=6.2e-17 Score=210.72 Aligned_cols=190 Identities=20% Similarity=0.195 Sum_probs=157.2
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeee-cCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is-~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d 556 (1288)
+.++..++.+++|+.... +....+.+|.+.|+++.|.+ +..+ +++|+.||.|++|+
T Consensus 548 las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~----L~Sgs~Dg~v~iWd--------------- 604 (793)
T PLN00181 548 VASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTL----LASGSDDGSVKLWS--------------- 604 (793)
T ss_pred EEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCE----EEEEcCCCEEEEEE---------------
Confidence 556677899999998754 45677889999999988764 3344 99999999999955
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-eEEEEeccCcCEEEEEECCCCCC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTE 635 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-~l~~~~~H~~~V~~l~~sp~~~~ 635 (1288)
+.++.....+..| ..|.++.|+ +++| .+|++|+.|++|++||+++++ .+..+.+|...|.++.|. +
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~----~~~g----~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~--- 671 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFP----SESG----RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D--- 671 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEe----CCCC----CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---
Confidence 4455567777755 689999996 3567 899999999999999998776 577888999999999997 4
Q ss_pred CCCCCEEEEEECCCcEEEEECCC------ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 636 HPWSDCFLSVGEDFSVALASLET------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~t------~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
+.++++++.|++|++||++. .+++..+.+|...+..++|+|++.+|++|+. |++|++|+...+
T Consensus 672 ---~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~--------D~~v~iw~~~~~ 740 (793)
T PLN00181 672 ---SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE--------TNEVFVYHKAFP 740 (793)
T ss_pred ---CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC--------CCEEEEEECCCC
Confidence 57899999999999999985 3678899999999999999999999998665 489999998776
Q ss_pred cEEEE
Q 000781 710 ARERV 714 (1288)
Q Consensus 710 ~l~~~ 714 (1288)
..+..
T Consensus 741 ~~~~s 745 (793)
T PLN00181 741 MPVLS 745 (793)
T ss_pred CceEE
Confidence 55443
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=4e-19 Score=202.35 Aligned_cols=223 Identities=17% Similarity=0.193 Sum_probs=182.2
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
..-+..+++|++.+. +.+..+|.+|...|..++|...... +++++.|+.+++ ||.++|
T Consensus 233 ~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~----fLS~sfD~~lKl---------------wDtETG 290 (503)
T KOG0282|consen 233 GGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTS----FLSASFDRFLKL---------------WDTETG 290 (503)
T ss_pred cCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCe----eeeeecceeeee---------------eccccc
Confidence 344667888988874 3688999999999999777776666 999999999999 458899
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
++...+.. ...++|+.|+| |+ .+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++ +.
T Consensus 291 ~~~~~f~~-~~~~~cvkf~p-----d~---~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------g~ 355 (503)
T KOG0282|consen 291 QVLSRFHL-DKVPTCVKFHP-----DN---QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------GR 355 (503)
T ss_pred eEEEEEec-CCCceeeecCC-----CC---CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------Cc
Confidence 99888753 35689999986 33 379999999999999999999999999999999999999999 89
Q ss_pred EEEEEECCCcEEEEECCCcee----------------------------------------------EEEecCCC--CCc
Q 000781 641 CFLSVGEDFSVALASLETLRV----------------------------------------------ERMFPGHP--NYP 672 (1288)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~t~~~----------------------------------------------l~~l~gH~--~~V 672 (1288)
.|++.++|++++||+.+..-. ...|.||. +.-
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 999999999999999875410 11234664 455
Q ss_pred EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCce
Q 000781 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1288)
Q Consensus 673 ~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~ 752 (1288)
..|.|+|||.+|++ +|.||.+++||.+|-+++..+.+|...++.+.|.+......+++.
T Consensus 436 ~~v~fSpDG~~l~S--------GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~------------- 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCS--------GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG------------- 494 (503)
T ss_pred eeEEEcCCCCeEEe--------ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc-------------
Confidence 68999999999995 444699999999999999999999999999988875544443333
Q ss_pred eeccCCcEEEEe
Q 000781 753 PIHEDGTFRQSQ 764 (1288)
Q Consensus 753 ~~~~D~tvr~w~ 764 (1288)
-||.|++|+
T Consensus 495 ---w~G~Ikiwd 503 (503)
T KOG0282|consen 495 ---WDGLIKIWD 503 (503)
T ss_pred ---cCceeEecC
Confidence 288888884
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.4e-19 Score=192.87 Aligned_cols=225 Identities=19% Similarity=0.222 Sum_probs=181.2
Q ss_pred cccccCccccccccCCCCCC----CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000781 480 LTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~----~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~ 555 (1288)
+.+.++++.+|+..+.+-.. +....|--+.+.|.|+.|..+... +++|+.||.|++|.
T Consensus 230 sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM----lAsGsqDGkIKvWr-------------- 291 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM----LASGSQDGKIKVWR-------------- 291 (508)
T ss_pred eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH----hhccCcCCcEEEEE--------------
Confidence 34556677777776554322 344556678899999888877776 99999999999965
Q ss_pred ccCCceeEEEEe-cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCC
Q 000781 556 KVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1288)
Q Consensus 556 d~~t~~~~~~l~-gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~ 634 (1288)
+++|.|++.|. .|+..|+|+.|+ .|+ ..++|+|.|.++|+.-+.+|+++..|++|...|+...|.++
T Consensus 292 -i~tG~ClRrFdrAHtkGvt~l~FS-----rD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d-- 359 (508)
T KOG0275|consen 292 -IETGQCLRRFDRAHTKGVTCLSFS-----RDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD-- 359 (508)
T ss_pred -EecchHHHHhhhhhccCeeEEEEc-----cCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC--
Confidence 66888999886 999999999994 566 88999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCceeEEEecCC----------------------------------------------
Q 000781 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGH---------------------------------------------- 668 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH---------------------------------------------- 668 (1288)
|+.+++++.||+|++|+.++.+|+.+|+.-
T Consensus 360 ----G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 360 ----GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR 435 (508)
T ss_pred ----CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence 899999999999999999988776665411
Q ss_pred -CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccc
Q 000781 669 -PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 747 (1288)
Q Consensus 669 -~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~ 747 (1288)
.+...+.+.+|.|.+++|.+. |+.+|.+...+|.+++++.-|...++.+...+.
T Consensus 436 EgGdFi~~~lSpkGewiYcigE--------D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH----------------- 490 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGE--------DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH----------------- 490 (508)
T ss_pred cCCceEEEEecCCCcEEEEEcc--------CcEEEEEEeecCceeeeeecccccccccccCcc-----------------
Confidence 011234466788888886443 599999999999999999999999987755442
Q ss_pred cCCceeeccCCcEEEE
Q 000781 748 SSLLLPIHEDGTFRQS 763 (1288)
Q Consensus 748 s~~l~~~~~D~tvr~w 763 (1288)
-+++.+..+|+.+|.|
T Consensus 491 qNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLW 506 (508)
T ss_pred cchhhhhcccchhhhc
Confidence 2234455679999998
No 64
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=4.7e-16 Score=183.42 Aligned_cols=232 Identities=12% Similarity=0.068 Sum_probs=164.2
Q ss_pred cccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000781 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t 559 (1288)
.....+-.++|...++.. ........||.+.|+.+.+.++..| +++.+.|.+-++ |...+.. ..|
T Consensus 333 ~~g~~Gg~hlWkt~d~~~-w~~~~~iSGH~~~V~dv~W~psGef----lLsvs~DQTTRl--Fa~wg~q----~~w---- 397 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKTF-WTQEPVISGHVDGVKDVDWDPSGEF----LLSVSLDQTTRL--FARWGRQ----QEW---- 397 (764)
T ss_pred EecccCcEEEEeccCccc-eeeccccccccccceeeeecCCCCE----EEEeccccceee--ecccccc----cce----
Confidence 345566677887333211 1333455899999999888887787 999999999998 3322110 001
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCC-----------------------------
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------------------------- 610 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t----------------------------- 610 (1288)
..+..-+-|....+|++|-+ + +..++||.+.+.+|+++...
T Consensus 398 -HEiaRPQiHGyDl~c~~~vn------~---~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 398 -HEIARPQIHGYDLTCLSFVN------E---DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred -eeecccccccccceeeehcc------C---CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 12223345888999999842 1 36899999999999997431
Q ss_pred --------------Cce---------------------------------EEEEeccCcCEEEEEECCCCCCCCCCCEEE
Q 000781 611 --------------GNL---------------------------------ITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1288)
Q Consensus 611 --------------g~~---------------------------------l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~ 643 (1288)
|.. ++++-||.-.|.+++.+|+ ++.++
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gnliA 541 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT------GNLIA 541 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC------CCEEe
Confidence 000 2244589999999999999 89999
Q ss_pred EEECC-----CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE----EEE
Q 000781 644 SVGED-----FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR----ERV 714 (1288)
Q Consensus 644 Sgs~D-----gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l----~~~ 714 (1288)
|++.. ..|+||+..+-..++.+.+|.-.|+.++|+|||+||++.|+| .++.+|....... ...
T Consensus 542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--------Rt~sl~~~~~~~~~e~~fa~ 613 (764)
T KOG1063|consen 542 SACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--------RTVSLYEVQEDIKDEFRFAC 613 (764)
T ss_pred ehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC--------ceEEeeeeecccchhhhhcc
Confidence 99875 468999999988889999999999999999999999987765 8999998744322 123
Q ss_pred EeCCCCceEEeeeecCccceeeecceeeCcccccCC-ceeeccCCcEEEEeCCcc
Q 000781 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL-LLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 715 l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~-l~~~~~D~tvr~w~~~~~ 768 (1288)
.+.|+--+..+. +.+.+. +...+||.++++|...+.
T Consensus 614 ~k~HtRIIWdcs------------------W~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 614 LKAHTRIIWDCS------------------WSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccccceEEEEcc------------------cCcccceeEEecCCceEEEEeccCc
Confidence 566764443332 333222 677789999999976533
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.1e-17 Score=202.29 Aligned_cols=219 Identities=18% Similarity=0.123 Sum_probs=170.0
Q ss_pred eecc-cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEeccc------cc--------------C------C-C-CCC
Q 000781 503 DDFV-HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLF------ER--------------H------N-S-PGA 553 (1288)
Q Consensus 503 ~~~~-~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~------~~--------------~------~-~-~~~ 553 (1288)
+.++ .|.+.|.++.|..+.++ |++|++||.|+||..-.. .. . . . ...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKy----LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKY----LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eccccccCCcEEEEEeCCCCce----eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3445 89999999999999998 999999999999985430 00 0 0 0 000
Q ss_pred cc---------c--------cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEE
Q 000781 554 SL---------K--------VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616 (1288)
Q Consensus 554 ~~---------d--------~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~ 616 (1288)
.- . .-..++++.|.||.+.|.+|.|+ . +++|+|+|+|+|||+|++...+|++.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-----K-----n~fLLSSSMDKTVRLWh~~~~~CL~~ 405 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-----K-----NNFLLSSSMDKTVRLWHPGRKECLKV 405 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccc-----c-----CCeeEeccccccEEeecCCCcceeeE
Confidence 00 0 01235778899999999999995 2 37999999999999999999999999
Q ss_pred EeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccC
Q 000781 617 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1288)
Q Consensus 617 ~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD 696 (1288)
| .|.+.|+||+|+|.. .++|+|||-|+.||||++...+.+.-..-| .-|++++|.|+|++.++|+.+
T Consensus 406 F-~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~------ 472 (712)
T KOG0283|consen 406 F-SHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFN------ 472 (712)
T ss_pred E-ecCCeeEEEEecccC-----CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEec------
Confidence 9 699999999999973 689999999999999999998887666555 589999999999999998876
Q ss_pred CCCeEEEEECCCCcEEEEEe--CC------CCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 697 AVDVLFIWDVKTGARERVLR--GT------ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 697 ~DgtV~VWDl~tg~l~~~l~--GH------~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
|.+++|+.+.-++....+ -| ...|+.++|++.... -++=+..|.+||+.+.+
T Consensus 473 --G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~----------------~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 473 --GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD----------------EVLVTSNDSRIRIYDGR 532 (712)
T ss_pred --cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC----------------eEEEecCCCceEEEecc
Confidence 899999998777654432 22 126888877753321 12333459999999973
No 66
>PTZ00421 coronin; Provisional
Probab=99.77 E-value=2.9e-17 Score=200.37 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=137.5
Q ss_pred EEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-------ceEEEEeccCcCEEEEEECCCCCCCC
Q 000781 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 565 ~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-------~~l~~~~~H~~~V~~l~~sp~~~~~~ 637 (1288)
.+.||.+.|++++|+| .++ ++|+||+.|++|++||+.++ +++..+.+|...|.+++|+|+.
T Consensus 70 ~l~GH~~~V~~v~fsP----~d~----~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~---- 137 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNP----FDP----QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA---- 137 (493)
T ss_pred eEeCCCCCEEEEEEcC----CCC----CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----
Confidence 4789999999999964 155 89999999999999999765 3577899999999999999972
Q ss_pred CCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
+++|++++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++. |++|+|||+++++.+.++.+
T Consensus 138 -~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~--------Dg~IrIwD~rsg~~v~tl~~ 208 (493)
T PTZ00421 138 -MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK--------DKKLNIIDPRDGTIVSSVEA 208 (493)
T ss_pred -CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC--------CCEEEEEECCCCcEEEEEec
Confidence 369999999999999999999999999999999999999999999997654 49999999999999999999
Q ss_pred CCCceE-EeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 718 TASHSM-FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 718 H~~~vi-~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
|..... .+.+++........|. .-..|+++++||+++..
T Consensus 209 H~~~~~~~~~w~~~~~~ivt~G~-------------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 209 HASAKSQRCLWAKRKDLIITLGC-------------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCCcceEEEEcCCCCeEEEEec-------------CCCCCCeEEEEeCCCCC
Confidence 986542 2334332111110110 01248999999987543
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.77 E-value=7.6e-18 Score=191.50 Aligned_cols=243 Identities=17% Similarity=0.207 Sum_probs=185.0
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCC
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Spd 586 (1288)
.|.+.|+...|++.+.. .+++++..+.++|+++......... .....+..+|.||++.-++|+|++.
T Consensus 122 ~h~gEVnRaRymPQnp~---iVAt~t~~~dv~Vfd~tk~~s~~~~-----~~~~~Pdl~L~gH~~eg~glsWn~~----- 188 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPN---IVATKTSSGDVYVFDYTKHPSKPKA-----SGECRPDLRLKGHEKEGYGLSWNRQ----- 188 (422)
T ss_pred cCCccchhhhhCCCCCc---EEEecCCCCCEEEEEeccCCCcccc-----cccCCCceEEEeecccccccccccc-----
Confidence 48889988777766654 4666788899999776432211000 0023466789999998889999752
Q ss_pred CCccCcEEEEEECCCcEEEEeCCCCc-------eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC--
Q 000781 587 GWSFNEVLVSGSMDCSIRIWDLGSGN-------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-- 657 (1288)
Q Consensus 587 G~~~~~~L~SGs~D~tI~vWDl~tg~-------~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~-- 657 (1288)
..-.|++|+.|++|++||+.... ....|.+|.+.|..++|+|-. ...|+++++|+.+.|||+|
T Consensus 189 ---~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-----~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 189 ---QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-----EDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred ---cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-----hhhheeecCCCeEEEEEcCCC
Confidence 23589999999999999997432 456799999999999999873 5799999999999999999
Q ss_pred CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeCCCCceEEeeeecCccceee
Q 000781 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSI 736 (1288)
Q Consensus 658 t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~ 736 (1288)
+.++.....+|.+.|+|++|+|-+.+++ ++++.|++|++||+|. .+++.++.+|...|..+.|.+.......
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~il-------AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFIL-------ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceE-------EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 6677788899999999999999887766 3444469999999997 5678999999999999988876543221
Q ss_pred ecceeeCcccccCCceeeccCCcEEEEeCCccccccc--ccccCCCcccccccCCCCCC
Q 000781 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVA--FSTISEPSASHVRKGNSGKP 793 (1288)
Q Consensus 737 sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~~~~~--~~~~~~p~~~~~~~g~~~~~ 793 (1288)
++ ..|+++.+||+......+. ......|+...+.+||..++
T Consensus 334 -----------SS-----g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV 376 (422)
T KOG0264|consen 334 -----------SS-----GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV 376 (422)
T ss_pred -----------ec-----ccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence 11 2499999999977655543 33446667677777887764
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3.6e-19 Score=192.67 Aligned_cols=175 Identities=22% Similarity=0.329 Sum_probs=146.5
Q ss_pred CCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCC
Q 000781 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1288)
Q Consensus 509 ~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~ 588 (1288)
...+-|..|.++..+ +++|+.||-|.+|+|-...- ..|++ -+....|.-|..+|.|+.|+ .|.
T Consensus 213 KSh~EcA~FSPDgqy----LvsgSvDGFiEVWny~~GKl------rKDLk-YQAqd~fMMmd~aVlci~FS-----RDs- 275 (508)
T KOG0275|consen 213 KSHVECARFSPDGQY----LVSGSVDGFIEVWNYTTGKL------RKDLK-YQAQDNFMMMDDAVLCISFS-----RDS- 275 (508)
T ss_pred ccchhheeeCCCCce----Eeeccccceeeeehhccchh------hhhhh-hhhhcceeecccceEEEeec-----ccH-
Confidence 345667667777777 99999999999977642110 00111 11223455688999999994 455
Q ss_pred ccCcEEEEEECCCcEEEEeCCCCceEEEEe-ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecC
Q 000781 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1288)
Q Consensus 589 ~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~-~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~g 667 (1288)
..++||+.||.|++|.+.+|.|+++|. .|+..|+|+.|+.+ +..++|++.|.++++--++.|+++..|+|
T Consensus 276 ---EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD------~SqiLS~sfD~tvRiHGlKSGK~LKEfrG 346 (508)
T KOG0275|consen 276 ---EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD------NSQILSASFDQTVRIHGLKSGKCLKEFRG 346 (508)
T ss_pred ---HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC------cchhhcccccceEEEeccccchhHHHhcC
Confidence 899999999999999999999999997 89999999999999 78899999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 668 H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
|.++|+...|.++|.++++++. ||+|+||+.+|++++.+++.
T Consensus 347 HsSyvn~a~ft~dG~~iisaSs--------DgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASS--------DGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred ccccccceEEcCCCCeEEEecC--------CccEEEecCcchhhhhhccC
Confidence 9999999999999999996443 49999999999999998873
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.5e-18 Score=179.73 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=154.0
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 527 ~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
.+++++.||++++|+ . ....++++.++.|...|.++.|++ .++ +.++++|.|++||+|
T Consensus 75 ~~~~a~GDGSLrl~d--~------------~~~s~Pi~~~kEH~~EV~Svdwn~----~~r----~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFD--L------------TMPSKPIHKFKEHKREVYSVDWNT----VRR----RIFLTSSWDGTIKLW 132 (311)
T ss_pred eEEEEecCceEEEec--c------------CCCCcchhHHHhhhhheEEecccc----ccc----eeEEeeccCCceEee
Confidence 388889999999955 2 123348899999999999999975 233 788888999999999
Q ss_pred eCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEE
Q 000781 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1288)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~t 686 (1288)
|...++.+++|.+|...|....|+|.. .++|+++|.|+++++||++..-....++.|...+.++.|+.-+..++.
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 999999999999999999999999984 689999999999999999975444459999999999999886655552
Q ss_pred EecCCCcccCCCCeEEEEECCC-CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 687 LCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 687 g~~D~sgssD~DgtV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
+++.|+.||+||++. .+.+..+.||.-.|-.+.|++... +...+.++ |.|+|+|+.
T Consensus 208 -------Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~-----------~lLaSasY-----DmT~riw~~ 264 (311)
T KOG0277|consen 208 -------TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA-----------SLLASASY-----DMTVRIWDP 264 (311)
T ss_pred -------ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh-----------hHhhhccc-----cceEEeccc
Confidence 334469999999987 567889999998887776654322 33445556 999999975
Q ss_pred C
Q 000781 766 Q 766 (1288)
Q Consensus 766 ~ 766 (1288)
.
T Consensus 265 ~ 265 (311)
T KOG0277|consen 265 E 265 (311)
T ss_pred c
Confidence 3
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.3e-17 Score=176.83 Aligned_cols=230 Identities=15% Similarity=0.077 Sum_probs=174.1
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
+.....++.+++||...+ ..++..|++|...|.++.+-.- .-+-+++++.||+|++|+ .
T Consensus 76 ~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~---~r~~~ltsSWD~TiKLW~---------------~ 134 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTV---RRRIFLTSSWDGTIKLWD---------------P 134 (311)
T ss_pred EEEEecCceEEEeccCCC---CcchhHHHhhhhheEEeccccc---cceeEEeeccCCceEeec---------------C
Confidence 455677899999995433 3578889999999999544332 223478889999999944 3
Q ss_pred CCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCC
Q 000781 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~ 637 (1288)
..++.++++.||...|....|+|.. + ++++++|.|+++++||++.......+..|...|.|+.|+.-.
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~----~----nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~---- 202 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHI----P----NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN---- 202 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCC----C----CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----
Confidence 3445788999999999999998743 2 899999999999999997543334489999999999998752
Q ss_pred CCCEEEEEECCCcEEEEECCCce-eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEEE
Q 000781 638 WSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVL 715 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t~~-~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~l 715 (1288)
...+++|+.|+.|+.||++..+ ++..+.||.-.|+.|+|+|...-|+ +++.-|=++||||.+.+ .++.+.
T Consensus 203 -~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL-------aSasYDmT~riw~~~~~ds~~e~~ 274 (311)
T KOG0277|consen 203 -HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL-------ASASYDMTVRIWDPERQDSAIETV 274 (311)
T ss_pred -CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh-------hhccccceEEecccccchhhhhhh
Confidence 4689999999999999999854 6888999999999999999875544 22223469999999854 456677
Q ss_pred eCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 716 ~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
.-|+..+..+.+..- ..+.+..+.=|+.+.+|+
T Consensus 275 ~~HtEFv~g~Dws~~----------------~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSLF----------------DPGQVASTGWDELLYVWN 307 (311)
T ss_pred hccceEEeccccccc----------------cCceeeecccccceeeec
Confidence 788877765555432 122233333388888885
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.6e-17 Score=172.80 Aligned_cols=200 Identities=18% Similarity=0.151 Sum_probs=165.3
Q ss_pred ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeec
Q 000781 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1288)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~ 581 (1288)
...+..|.+.|.++.|--+..+ .++++.|.+|++| + ...+.+++++.||...|..++.+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY----~ltcGsdrtvrLW--N-------------p~rg~liktYsghG~EVlD~~~s-- 68 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNY----CLTCGSDRTVRLW--N-------------PLRGALIKTYSGHGHEVLDAALS-- 68 (307)
T ss_pred ceeecccccceEEEEEccCCCE----EEEcCCCceEEee--c-------------ccccceeeeecCCCceeeecccc--
Confidence 3456788999999888888887 7777899999993 3 45677999999999999999873
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc--
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-- 659 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-- 659 (1288)
.|. ..+++|+.|+.|.+||+.+|+.+++|.+|.+.|+.+.|+.+ ...++||+.|.++++||.|..
T Consensus 69 ---~Dn----skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee------sSVv~SgsfD~s~r~wDCRS~s~ 135 (307)
T KOG0316|consen 69 ---SDN----SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE------SSVVASGSFDSSVRLWDCRSRSF 135 (307)
T ss_pred ---ccc----cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc------ceEEEeccccceeEEEEcccCCC
Confidence 344 78999999999999999999999999999999999999988 789999999999999999865
Q ss_pred eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecc
Q 000781 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1288)
Q Consensus 660 ~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgs 739 (1288)
++++.+..-.+.|.+|... +..++.|+. ||++|.||++.|++...+-||. |+++.|.+ +|
T Consensus 136 ePiQildea~D~V~Si~v~--~heIvaGS~--------DGtvRtydiR~G~l~sDy~g~p--it~vs~s~-------d~- 195 (307)
T KOG0316|consen 136 EPIQILDEAKDGVSSIDVA--EHEIVAGSV--------DGTVRTYDIRKGTLSSDYFGHP--ITSVSFSK-------DG- 195 (307)
T ss_pred CccchhhhhcCceeEEEec--ccEEEeecc--------CCcEEEEEeecceeehhhcCCc--ceeEEecC-------CC-
Confidence 6788888778899999886 456665444 4999999999999988888885 55554543 22
Q ss_pred eeeCcccccCCceeeccCCcEEEEe
Q 000781 740 VLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 740 i~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
+.++.+.+ |.++|..+
T Consensus 196 ----nc~La~~l-----~stlrLlD 211 (307)
T KOG0316|consen 196 ----NCSLASSL-----DSTLRLLD 211 (307)
T ss_pred ----CEEEEeec-----cceeeecc
Confidence 34444455 89999987
No 72
>PTZ00420 coronin; Provisional
Probab=99.76 E-value=6.9e-17 Score=198.24 Aligned_cols=142 Identities=19% Similarity=0.246 Sum_probs=121.6
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc--------eEEEEeccCcCEEEEEECC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--------LITVMHHHVAPVRQIILSP 631 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~--------~l~~~~~H~~~V~~l~~sp 631 (1288)
..++..+.+|.+.|++++|+|. ++ ++|+||+.|++|++||+.++. ++..+.+|.+.|.+++|+|
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~----~~----~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPC----FS----EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCC----CC----CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 3467889999999999999641 24 799999999999999997642 3457889999999999999
Q ss_pred CCCCCCCCC-EEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 632 PQTEHPWSD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 632 ~~~~~~~g~-~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
+ +. .+++++.|++|+|||+++++.+..+. |...|.+++|+|+|.+|+++|. |++|+|||+++++
T Consensus 136 ~------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~--------D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 136 M------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV--------GKHMHIIDPRKQE 200 (568)
T ss_pred C------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec--------CCEEEEEECCCCc
Confidence 8 55 56899999999999999998887776 5578999999999999997654 3899999999999
Q ss_pred EEEEEeCCCCceEE
Q 000781 711 RERVLRGTASHSMF 724 (1288)
Q Consensus 711 l~~~l~GH~~~vi~ 724 (1288)
.+.++.+|.+.+..
T Consensus 201 ~i~tl~gH~g~~~s 214 (568)
T PTZ00420 201 IASSFHIHDGGKNT 214 (568)
T ss_pred EEEEEecccCCcee
Confidence 99999999976543
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=4e-17 Score=182.40 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=165.6
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
+..+.+..|.+.|.-+.|..+.++ |++++.|.+..+|..... .+ -+..+++.||..+|..+.|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGky----LAsaSkD~Taiiw~v~~d-----------~~-~kl~~tlvgh~~~V~yi~w- 277 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKY----LASASKDSTAIIWIVVYD-----------VH-FKLKKTLVGHSQPVSYIMW- 277 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCee----EeeccCCceEEEEEEecC-----------cc-eeeeeeeecccCceEEEEE-
Confidence 455667889999999888888888 999999999999775522 22 3478899999999999999
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEe-ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~-~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t 658 (1288)
|||. ++|++++.|..+++||+.+|.+.+.+. +|...+.+++|.|| |..+++|+.|+++..||+..
T Consensus 278 ----SPDd----ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD------g~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 278 ----SPDD----RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD------GFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred ----CCCC----CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC------CceeEecCCCCcEEEecCCc
Confidence 5676 999999999999999999999988874 35689999999999 88999999999999999874
Q ss_pred ceeEEEecCCC-CCcEEEEEcCCCCEEEEEecCC----------------------------------------------
Q 000781 659 LRVERMFPGHP-NYPAKVVWDCPRGYIACLCRDH---------------------------------------------- 691 (1288)
Q Consensus 659 ~~~l~~l~gH~-~~V~~V~~sp~~~~L~tg~~D~---------------------------------------------- 691 (1288)
. .+...+|-. ..|.+++..+||.++++.+.|.
T Consensus 344 n-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 344 N-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred c-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 3 111121111 1233333333333333333332
Q ss_pred --------------------------------CcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecc
Q 000781 692 --------------------------------SRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1288)
Q Consensus 692 --------------------------------sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgs 739 (1288)
-+++++|+.||||+.++|.++.++.||...|.++.+.|.......+++
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 124556799999999999999999999999988877765544333333
Q ss_pred eeeCcccccCCceeeccCCcEEEEeCC
Q 000781 740 VLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 740 i~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
.|+|||+|..+
T Consensus 503 ----------------DDgtIRIWg~~ 513 (519)
T KOG0293|consen 503 ----------------DDGTIRIWGPS 513 (519)
T ss_pred ----------------CCCeEEEecCC
Confidence 59999999654
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.75 E-value=3.4e-17 Score=186.23 Aligned_cols=216 Identities=19% Similarity=0.181 Sum_probs=167.1
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
..+.+|.+.=+. +..+...+-.+++|+.|+.|.+|+...... +-+.-.+...+.+|...|..++|||.|
T Consensus 171 l~L~gH~~eg~g---lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~--------~~~~~~p~~~~~~h~~~VeDV~~h~~h 239 (422)
T KOG0264|consen 171 LRLKGHEKEGYG---LSWNRQQEGTLLSGSDDHTICLWDINAESK--------EDKVVDPKTIFSGHEDVVEDVAWHPLH 239 (422)
T ss_pred eEEEeecccccc---cccccccceeEeeccCCCcEEEEecccccc--------CCccccceEEeecCCcceehhhccccc
Confidence 356778775444 344555555699999999999977653221 112223678899999999999999754
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCC--CCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL- 659 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~--tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~- 659 (1288)
. .+++++++|+.+.|||++ +.++.+...+|.++|+|++|+|-+ +..||+||.|++|+|||+|+.
T Consensus 240 ~--------~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~-----~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 240 E--------DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN-----EFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred h--------hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC-----CceEEeccCCCcEEEeechhcc
Confidence 3 799999999999999999 566778889999999999999984 679999999999999999975
Q ss_pred eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-Cc-------------EEEEEeCCCCceEEe
Q 000781 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GA-------------RERVLRGTASHSMFD 725 (1288)
Q Consensus 660 ~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~-------------l~~~l~GH~~~vi~~ 725 (1288)
++++++.+|...|.+|.|+|....++ ++++.|+.+.|||+.. |+ ++..=.||++.|.-.
T Consensus 307 ~~lh~~e~H~dev~~V~WSPh~etvL-------ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 307 KPLHTFEGHEDEVFQVEWSPHNETVL-------ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred cCceeccCCCcceEEEEeCCCCCcee-------EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 57899999999999999999887766 3555689999999964 22 224446888888655
Q ss_pred eeecCccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 726 ~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
.+++ .-+--+.++..|+.+.+|..
T Consensus 380 sWnp----------------~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 380 SWNP----------------NEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred cCCC----------------CCCeEEEEecCCceEEEeec
Confidence 5553 22334556678999999964
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=1.6e-16 Score=196.39 Aligned_cols=237 Identities=16% Similarity=0.167 Sum_probs=189.1
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCC----CCCCccccCCceeEEEEecCCcCEEE
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHN----SPGASLKVNSHVSRQYFLGHTGAVLC 575 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~----~~~~~~d~~t~~~~~~l~gH~~~V~~ 575 (1288)
........|.+.|+|+.|..+..+ +++|++|+.|.||.... .... .+++.-+.+..+....|+||.+.|..
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~----lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSY----LASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD 134 (942)
T ss_pred hhheeeccccCceeEEEECCCCCe----EeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccce
Confidence 345566789999999888888887 99999999999988874 2111 12344467788899999999999999
Q ss_pred EEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 576 L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
+.| +||+ .+|+|+|.|++|.+||..+.+++.++.+|.+.|..+.|.|. |++|||-++|++|++|.
T Consensus 135 v~W-----sp~~----~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 135 VNW-----SPDD----SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWR 199 (942)
T ss_pred ecc-----CCCc----cEEEEecccceEEEEccccceeeeeeecccccccceEECCc------cCeeeeecCCceEEEEE
Confidence 999 5677 99999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCceeEEEecCCC------CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 656 LETLRVERMFPGHP------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 656 l~t~~~l~~l~gH~------~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+.+..+.+.+.++- ...+.+.|+|||+||++...- -..-.++.|-+-.+.+....+-||.+++..+.|.+
T Consensus 200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~----n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV----NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc----cCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 88877777776553 356799999999999986543 11125899999999999999999999999999987
Q ss_pred Cccce-eeecceeeCcccccC----CceeeccCCcEEEEeC
Q 000781 730 GISMN-SISGSVLNGNTSVSS----LLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 730 ~~~~~-~~sgsi~~w~~~~s~----~l~~~~~D~tvr~w~~ 765 (1288)
.+-.. --.|+ -...+ -+..-.+|+++-+|..
T Consensus 276 ~lfe~~~~ng~-----~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 276 KLFERNNKNGT-----STQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred HHhccccccCC-----ccCCCcceEEEEEecCCccEEEEec
Confidence 53321 11222 11111 1123357999999964
No 76
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.8e-16 Score=166.60 Aligned_cols=185 Identities=19% Similarity=0.265 Sum_probs=150.0
Q ss_pred cccCccccccccCCCCCCCcceec-ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 482 FCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 482 ~~~s~~~lWd~~~~~~~~~~~~~~-~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
..+..+++|+...... -.+...+ .+|...|.++++.+..++ |++|+.|.++.||.-. -.+-
T Consensus 34 g~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~----La~aSFD~t~~Iw~k~-------------~~ef 95 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRY----LASASFDATVVIWKKE-------------DGEF 95 (312)
T ss_pred cCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcE----EEEeeccceEEEeecC-------------CCce
Confidence 3455567776654211 1122222 579999999888887777 9999999999995411 1133
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC---ceEEEEeccCcCEEEEEECCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg---~~l~~~~~H~~~V~~l~~sp~~~~~~ 637 (1288)
+++.+|.||...|.|++| +++| ++||++|.|++|-||.+..+ ++...+..|+.-|..+.|+|.
T Consensus 96 ecv~~lEGHEnEVK~Vaw-----s~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt----- 161 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAW-----SASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT----- 161 (312)
T ss_pred eEEeeeeccccceeEEEE-----cCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-----
Confidence 589999999999999999 5788 99999999999999999744 478899999999999999998
Q ss_pred CCCEEEEEECCCcEEEEECC---CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 638 WSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~---t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
..+|+|+|.|.+||+|.-. .-.|++++.+|.+.|++++|++.|..|++++ | |++|+||-..
T Consensus 162 -~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s-------d-D~tv~Iw~~~ 225 (312)
T KOG0645|consen 162 -EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS-------D-DGTVSIWRLY 225 (312)
T ss_pred -cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec-------C-CcceEeeeec
Confidence 6899999999999999876 3478999999999999999999999998533 2 6999999854
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=7.5e-17 Score=190.19 Aligned_cols=213 Identities=21% Similarity=0.223 Sum_probs=165.5
Q ss_pred cccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000781 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t 559 (1288)
....+..+-+|...... ...++.+|...|+|+....+.. +++|+.|.+.++|. .
T Consensus 76 ~g~~D~~i~v~~~~~~~----P~~~LkgH~snVC~ls~~~~~~-----~iSgSWD~TakvW~-----------------~ 129 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAE----PLYTLKGHKSNVCSLSIGEDGT-----LISGSWDSTAKVWR-----------------I 129 (745)
T ss_pred eecccceEEEEecCCCC----chhhhhccccceeeeecCCcCc-----eEecccccceEEec-----------------c
Confidence 34445566677776654 4577899999999954333332 89999999999965 3
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
+++...+.||+..|++++.-| + +.++|||.|++||+|.- ++++++|.+|++.|+.+++.|+
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~-----e-----~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~------- 190 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLP-----E-----NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD------- 190 (745)
T ss_pred hhhhcccCCcchheeeeeecC-----C-----CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-------
Confidence 345667999999999999754 2 58999999999999974 8899999999999999999987
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
..|+|++.||.|++|++ +++++..+.||++.|+++...++++.+++++. |++++||+.. ++.+.++-.+
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE--------DrtlriW~~~--e~~q~I~lPt 259 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE--------DRTLRIWKKD--ECVQVITLPT 259 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC--------CceEEEeecC--ceEEEEecCc
Confidence 46999999999999999 79999999999999999998778888885443 5999999976 8888887665
Q ss_pred CceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 720 ~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
-.+..+ -|-. +|+.++ -.+||.+|+|...
T Consensus 260 tsiWsa-~~L~-----------NgDIvv------g~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSA-KVLL-----------NGDIVV------GGSDGRVRVFTVD 288 (745)
T ss_pred cceEEE-EEee-----------CCCEEE------eccCceEEEEEec
Confidence 555433 1111 222221 1239999999864
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=1.1e-15 Score=162.91 Aligned_cols=144 Identities=21% Similarity=0.328 Sum_probs=121.8
Q ss_pred EcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC
Q 000781 532 FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 611 (1288)
Q Consensus 532 s~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg 611 (1288)
...|.|.|..|. .-++++.++.|.....|+.| +|+| +++++|+.|..+-+||+...
T Consensus 166 ~GlG~v~ILsyp---------------sLkpv~si~AH~snCicI~f-----~p~G----ryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 166 NGLGCVEILSYP---------------SLKPVQSIKAHPSNCICIEF-----DPDG----RYFATGSADALVSLWDVDEL 221 (313)
T ss_pred cCCceEEEEecc---------------ccccccccccCCcceEEEEE-----CCCC----ceEeeccccceeeccChhHh
Confidence 345788886654 33488999999999999999 5799 99999999999999999999
Q ss_pred ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCC
Q 000781 612 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 691 (1288)
Q Consensus 612 ~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~ 691 (1288)
-|++.|.-+.-||+.+.|+-+ |++|+|+|.|+.|-|=++++|..+..++ |.++-..|+|+|...+|+-+|.|.
T Consensus 222 iC~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred hhheeeccccCceEEEEeccC------cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 999999999999999999999 8999999999999999999999998887 567889999999999999877662
Q ss_pred Cc--ccCCCCeEEEEECC
Q 000781 692 SR--TSDAVDVLFIWDVK 707 (1288)
Q Consensus 692 sg--ssD~DgtV~VWDl~ 707 (1288)
-+ .-+ -|+|+++-+.
T Consensus 295 ~~d~~re-ag~vKiFG~~ 311 (313)
T KOG1407|consen 295 DGDSNRE-AGTVKIFGLS 311 (313)
T ss_pred CCccccc-cceeEEecCC
Confidence 11 111 1567766543
No 79
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.5e-17 Score=197.90 Aligned_cols=197 Identities=19% Similarity=0.205 Sum_probs=155.8
Q ss_pred ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCc
Q 000781 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS 602 (1288)
Q Consensus 523 ~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~t 602 (1288)
+..+.|++++.+|.|.+|+..... ..+.+..|..|+..|+++.||+.++ .+|+|||+||+
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~tep--------~iliSGSQDg~ 157 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHSTEP--------NILISGSQDGT 157 (839)
T ss_pred chhhhheeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeeccCCc--------cEEEecCCCce
Confidence 334448999999999997655211 2335668899999999999986432 89999999999
Q ss_pred EEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC-ceeEEEecCCCCCcEEEEEcCCC
Q 000781 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPR 681 (1288)
Q Consensus 603 I~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t-~~~l~~l~gH~~~V~~V~~sp~~ 681 (1288)
|++||++..+...+|.+....|+.|.|+|.. +..|+++.+.|.+.+||+|. .++...+..|.++|.|+-|+|++
T Consensus 158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred EEEEeeecccccccccccchhhhceeeccCC-----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence 9999999999999999999999999999984 78999999999999999985 57888999999999999999999
Q ss_pred CEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC-CCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcE
Q 000781 682 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT-ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1288)
Q Consensus 682 ~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH-~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tv 760 (1288)
.+|+||++ |+.|+|||+.+++.-....-| .+++..+.|-|+..-...+.+ + .-|-.|
T Consensus 233 ~~lATGGR--------DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcs-----------m---v~dtsV 290 (839)
T KOG0269|consen 233 EWLATGGR--------DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCS-----------M---VVDTSV 290 (839)
T ss_pred ceeeecCC--------CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhh-----------c---cccceE
Confidence 99998765 499999999876543333322 345666666665443322222 1 128889
Q ss_pred EEEeCC
Q 000781 761 RQSQIQ 766 (1288)
Q Consensus 761 r~w~~~ 766 (1288)
++|+++
T Consensus 291 ~VWDvr 296 (839)
T KOG0269|consen 291 HVWDVR 296 (839)
T ss_pred EEEeec
Confidence 999975
No 80
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.73 E-value=5.3e-17 Score=191.48 Aligned_cols=218 Identities=18% Similarity=0.264 Sum_probs=172.3
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEE-EEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSS-SMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts-~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t 559 (1288)
.+.++++++|+....... ....|.+|.+-|.. .+|.....+ .++.|+.|+.|.++. ..+
T Consensus 31 ~sRd~t~~vw~~~~~~~l--~~~~~~~~~g~i~~~i~y~e~~~~---~l~~g~~D~~i~v~~---------------~~~ 90 (745)
T KOG0301|consen 31 GSRDGTVKVWAKKGKQYL--ETHAFEGPKGFIANSICYAESDKG---RLVVGGMDTTIIVFK---------------LSQ 90 (745)
T ss_pred cCCCCceeeeeccCcccc--cceecccCcceeeccceeccccCc---ceEeecccceEEEEe---------------cCC
Confidence 345667888887654332 23556777777766 677653332 299999999999854 335
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
..+..+|+||.+.|.|+... .++ .++|||.|.|+++|-. +++...+.+|+..|.++...|+
T Consensus 91 ~~P~~~LkgH~snVC~ls~~-----~~~-----~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e------- 151 (745)
T KOG0301|consen 91 AEPLYTLKGHKSNVCSLSIG-----EDG-----TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE------- 151 (745)
T ss_pred CCchhhhhccccceeeeecC-----CcC-----ceEecccccceEEecc--hhhhcccCCcchheeeeeecCC-------
Confidence 56899999999999999862 233 4999999999999964 6677779999999999999998
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
+.++|||.|++||+|.- ++++++|.||.+.|+.+++-+++.+|-| +.||.|+.|++ +|++++.+.||+
T Consensus 152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc---------sNDg~Ir~w~~-~ge~l~~~~ght 219 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC---------SNDGSIRLWDL-DGEVLLEMHGHT 219 (745)
T ss_pred CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee---------cCCceEEEEec-cCceeeeeeccc
Confidence 48999999999999965 8899999999999999999998877653 23699999999 899999999999
Q ss_pred CceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 720 ~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
+.+...... ......+++.+|+++|+|+..
T Consensus 220 n~vYsis~~-----------------~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 220 NFVYSISMA-----------------LSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEEEEEEec-----------------CCCCeEEEecCCceEEEeecC
Confidence 998554211 113345677789999999754
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=4.7e-17 Score=190.54 Aligned_cols=224 Identities=15% Similarity=0.195 Sum_probs=174.0
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
....++.|.+.|+.++...+..- +++++.|-+|++|+..... .-+..+++.|+..|.||++-
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~t----lIS~SsDtTVK~W~~~~~~-------------~~c~stir~H~DYVkcla~~- 126 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKT----LISASSDTTVKVWNAHKDN-------------TFCMSTIRTHKDYVKCLAYI- 126 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCc----eEEecCCceEEEeecccCc-------------chhHhhhhcccchheeeeec-
Confidence 35667889999987655555544 9999999999997644211 13678899999999999983
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCC--ceEEEE--------e-ccCcCEEEEEECCCCCCCCCCCEEEEEECCC
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVM--------H-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg--~~l~~~--------~-~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
.++ +.++||||.|+.|.+||+++| +.+++| . |+..+|.+++.++. |..|++|+..+
T Consensus 127 ---ak~----~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t------~t~ivsGgtek 193 (735)
T KOG0308|consen 127 ---AKN----NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT------GTIIVSGGTEK 193 (735)
T ss_pred ---ccC----ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc------ceEEEecCccc
Confidence 123 389999999999999999988 333333 2 78899999999998 78999999999
Q ss_pred cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 650 sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
.+++||.++++.+..++||..-|..+..++||..+++++ + ||+|++||+...+++.++..|...|......+
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s------S--DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS------S--DGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC------C--CceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999999999643 3 49999999999999999999999988773332
Q ss_pred CccceeeecceeeCcccccCCceeeccCCcEEEEeCCcccccccccccCCC
Q 000781 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEP 780 (1288)
Q Consensus 730 ~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~~~~~~~~~~~p 780 (1288)
.+ ...++|. +|+.|-.-++++..+...+-...+|
T Consensus 266 sf-~~vYsG~----------------rd~~i~~Tdl~n~~~~tlick~daP 299 (735)
T KOG0308|consen 266 SF-THVYSGG----------------RDGNIYRTDLRNPAKSTLICKEDAP 299 (735)
T ss_pred Cc-ceEEecC----------------CCCcEEecccCCchhheEeecCCCc
Confidence 22 2333443 4777777777665443333333333
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=9.3e-17 Score=183.66 Aligned_cols=205 Identities=21% Similarity=0.217 Sum_probs=164.2
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
.+|....+.|++..|-.+... +++|...|.|.+ || .++...++.+++|+.+|..+.|+|
T Consensus 62 k~~srFk~~v~s~~fR~DG~L----laaGD~sG~V~v--fD-------------~k~r~iLR~~~ah~apv~~~~f~~-- 120 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRL----LAAGDESGHVKV--FD-------------MKSRVILRQLYAHQAPVHVTKFSP-- 120 (487)
T ss_pred hhHHhhccceeEEEeecCCeE----EEccCCcCcEEE--ec-------------cccHHHHHHHhhccCceeEEEecc--
Confidence 345556678888777777776 889989999999 43 334446778899999999999974
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-ee
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RV 661 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~ 661 (1288)
.| +..+++|++|+.+++||+.+......+.+|++.|+|.+|+|.. ++.++|||.||+||+||++.. ..
T Consensus 121 --~d----~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~~ 189 (487)
T KOG0310|consen 121 --QD----NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTSR 189 (487)
T ss_pred --cC----CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCce
Confidence 23 4899999999999999999998766899999999999999974 679999999999999999987 55
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEEEeCCCCceEEeeeecCccceeeecce
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi 740 (1288)
+..+. |..+|..|.+-|.|..+++++. +.|+|||+-+| +++..+..|...|+++.+..+ +
T Consensus 190 v~eln-hg~pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~-------~-- 250 (487)
T KOG0310|consen 190 VVELN-HGCPVESVLALPSGSLIASAGG---------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD-------S-- 250 (487)
T ss_pred eEEec-CCCceeeEEEcCCCCEEEEcCC---------CeEEEEEecCCceehhhhhcccceEEEEEeecC-------C--
Confidence 66664 7889999999999999996432 59999999865 445555559999998866531 1
Q ss_pred eeCcccccCCceeeccCCcEEEEeCC
Q 000781 741 LNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 741 ~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
.-++++++ |+.+|+++..
T Consensus 251 ---~rLlS~sL-----D~~VKVfd~t 268 (487)
T KOG0310|consen 251 ---TRLLSGSL-----DRHVKVFDTT 268 (487)
T ss_pred ---ceEeeccc-----ccceEEEEcc
Confidence 23445555 9999999854
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.4e-15 Score=165.90 Aligned_cols=92 Identities=22% Similarity=0.335 Sum_probs=78.3
Q ss_pred EEeCCCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccc
Q 000781 8 CIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1288)
Q Consensus 8 ~lw~~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~ 87 (1288)
-+|...++...|||+|+ +++++||||.|-+|.|||+.. ......+..|++.|++|.|..+
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-----~~qlg~ll~HagsitaL~F~~~------------- 94 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-----RKQLGILLSHAGSITALKFYPP------------- 94 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccc-----hhhhcceeccccceEEEEecCC-------------
Confidence 36777888889999999 799999999999999999986 5667788899999999988655
Q ss_pred ccccCcccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCC
Q 000781 88 AENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1288)
Q Consensus 88 ~~~~~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~ 131 (1288)
.. .+.|+|+++||.|++|+..+..|....+.|
T Consensus 95 -----------~S-~shLlS~sdDG~i~iw~~~~W~~~~slK~H 126 (362)
T KOG0294|consen 95 -----------LS-KSHLLSGSDDGHIIIWRVGSWELLKSLKAH 126 (362)
T ss_pred -----------cc-hhheeeecCCCcEEEEEcCCeEEeeeeccc
Confidence 11 127999999999999999998888776654
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-16 Score=183.19 Aligned_cols=221 Identities=18% Similarity=0.179 Sum_probs=173.9
Q ss_pred ccCccccccccCCCCCCCcceeccc-CCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCce
Q 000781 483 CQDTVPRSEHVDSRQAGDGRDDFVH-KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~~~~~~~~~~~-h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~ 561 (1288)
.++.+.+||....+. ...+.+ |...|.+ ..+....+.+|+.||.|..++.- ..+
T Consensus 237 ~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~------laW~~~~lssGsr~~~I~~~dvR---------------~~~ 291 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKK----TRTLRGSHASRVGS------LAWNSSVLSSGSRDGKILNHDVR---------------ISQ 291 (484)
T ss_pred cCCeEEEEehhhccc----cccccCCcCceeEE------EeccCceEEEecCCCcEEEEEEe---------------cch
Confidence 445566777665532 234455 8889988 34445569999999999995533 222
Q ss_pred e-EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 562 S-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 562 ~-~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
. ..++.+|...|..+.| ++|+ .+++||+.|+.+.|||.....++..+..|.+.|.+++|+|-. ..
T Consensus 292 ~~~~~~~~H~qeVCgLkw-----s~d~----~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-----~~ 357 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKW-----SPDG----NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-----SG 357 (484)
T ss_pred hhhhhhhcccceeeeeEE-----CCCC----CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-----cC
Confidence 1 2248899999999999 4688 999999999999999998888999999999999999999984 56
Q ss_pred EEEEEE--CCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC
Q 000781 641 CFLSVG--EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1288)
Q Consensus 641 ~l~Sgs--~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH 718 (1288)
.||+|+ .|++|++||..+++.+...... ++|..+.|++..+-|+++. +..++.|.||+..+...+..+.||
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sth------G~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTH------GYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEec------CCCCCcEEEEeccccceeeeecCC
Confidence 888875 5999999999999999877654 5899999999998888643 333579999999999999999999
Q ss_pred CCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 719 ~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
..+|..+...++ | +++++.. .|.|+|+|++-
T Consensus 431 ~~RVl~la~SPd-------g-----~~i~t~a-----~DETlrfw~~f 461 (484)
T KOG0305|consen 431 TSRVLYLALSPD-------G-----ETIVTGA-----ADETLRFWNLF 461 (484)
T ss_pred cceeEEEEECCC-------C-----CEEEEec-----ccCcEEecccc
Confidence 999988766653 2 2222222 49999999753
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=2.7e-16 Score=171.48 Aligned_cols=214 Identities=19% Similarity=0.210 Sum_probs=166.1
Q ss_pred ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeec
Q 000781 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1288)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~ 581 (1288)
...|..|.+.++++++ +..+ +++|+.|.+|+|++ ++..+.+..+..|.+.|+++.|.+.
T Consensus 36 lF~~~aH~~sitavAV--s~~~----~aSGssDetI~IYD---------------m~k~~qlg~ll~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPY----VASGSSDETIHIYD---------------MRKRKQLGILLSHAGSITALKFYPP 94 (362)
T ss_pred cccccccccceeEEEe--ccee----EeccCCCCcEEEEe---------------ccchhhhcceeccccceEEEEecCC
Confidence 4567889999999544 3455 99999999999944 4455677888899999999999652
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
. ...+|+||++||.|.+|+....++++.+++|.+.|+.++++|. +.+-++.+.|+.+++||+-.|+.
T Consensus 95 ~-------S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS------~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 95 L-------SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS------GKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred c-------chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC------CceEEEEcCCceeeeehhhcCcc
Confidence 2 1258999999999999999999999999999999999999999 89999999999999999988875
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCC--------------------------------CcccCCCCeEEEEECCCC
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDH--------------------------------SRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~--------------------------------sgssD~DgtV~VWDl~tg 709 (1288)
-..++-- ...+.|.|+|.|.+++.+..+. +.++| |+.|++||-.++
T Consensus 162 a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d-~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 162 AFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD-NEWISLKDTDSD 239 (362)
T ss_pred ceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC-CceEEEeccCCC
Confidence 4443311 2334577887777666665553 22333 689999999999
Q ss_pred cEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 710 ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 710 ~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
.+...+.+|.++|-...+.. . .....++++.+||.|++|++.
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~--------~-------~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYT--------N-------PEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ccceeeecchhheeeeEEEe--------c-------CCceEEEEeccCceEEEEEcc
Confidence 99999999999996553221 0 001245667779999999965
No 86
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=7.9e-18 Score=198.77 Aligned_cols=204 Identities=17% Similarity=0.254 Sum_probs=169.2
Q ss_pred cccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccC
Q 000781 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1288)
Q Consensus 505 ~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~S 584 (1288)
+..|...|.++.......+ +++|+.|..+-+|.. ....++..|.||.+.|.||.|++
T Consensus 24 ~~~hsaav~~lk~~~s~r~----~~~Gg~~~k~~L~~i---------------~kp~~i~S~~~hespIeSl~f~~---- 80 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRS----LVTGGEDEKVNLWAI---------------GKPNAITSLTGHESPIESLTFDT---- 80 (825)
T ss_pred hhhhhhhhceeeeecccee----eccCCCceeeccccc---------------cCCchhheeeccCCcceeeecCc----
Confidence 4568888888766666666 899988877777432 22224456899999999999963
Q ss_pred CCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE
Q 000781 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1288)
Q Consensus 585 pdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~ 664 (1288)
+. .+|+.|+.||+|++||+..++.++++.+|...+.++.|+|- +.++++|+.|..+++||.+..-|.+.
T Consensus 81 -~E----~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~------~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 81 -SE----RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY------GEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred -ch----hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc------eEEeccccccccceehhhhccCceee
Confidence 33 79999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCc
Q 000781 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 744 (1288)
Q Consensus 665 l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~ 744 (1288)
+.+|...|..+.|+|+|.+++.|+. |.+++|||+..|++...|.+|...+..+.|.+...
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~e--------d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~------------ 209 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGE--------DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV------------ 209 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCC--------cceeeeecccccccccccccccccccccccCchhh------------
Confidence 9999999999999999999996432 58999999999999999999999998776654211
Q ss_pred ccccCCceeeccCCcEEEEeCCc
Q 000781 745 TSVSSLLLPIHEDGTFRQSQIQN 767 (1288)
Q Consensus 745 ~~~s~~l~~~~~D~tvr~w~~~~ 767 (1288)
.+-+...|.++|+|+++.
T Consensus 210 -----Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 210 -----LLAPGSSDRTVRFWDLET 227 (825)
T ss_pred -----hhccCCCCceeeeeccce
Confidence 112222499999999863
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=4.9e-16 Score=182.14 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=162.7
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
+...+.+.++++|+...... -...++..|.+.|.|++|+..+.+ .+++|+-|+.|++|+++.... .....+.
T Consensus 88 lIS~SsDtTVK~W~~~~~~~--~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~-~l~~s~n-- 159 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNT--FCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTA-TLVASFN-- 159 (735)
T ss_pred eEEecCCceEEEeecccCcc--hhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcch-hhhhhcc--
Confidence 55678899999999876542 355667889999999999644433 289999999999988763211 0011111
Q ss_pred CCceeEEEEe-cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCC
Q 000781 558 NSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1288)
Q Consensus 558 ~t~~~~~~l~-gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~ 636 (1288)
......+. ||...|++++.+ +.| ..+++|+..+.+++||.++++.+.++.||+..|+++..+++
T Consensus 160 --~~t~~sl~sG~k~siYSLA~N-----~t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD---- 224 (735)
T KOG0308|consen 160 --NVTVNSLGSGPKDSIYSLAMN-----QTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD---- 224 (735)
T ss_pred --ccccccCCCCCccceeeeecC-----Ccc----eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC----
Confidence 11233344 999999999985 466 89999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
|..++|+|.||+|++||+...+|+.++..|...|+++..+|+-.++++| |+||.|+.=|+++.
T Consensus 225 --Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG--------~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 225 --GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG--------GRDGNIYRTDLRNP 287 (735)
T ss_pred --CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec--------CCCCcEEecccCCc
Confidence 8999999999999999999999999999999999999999999999954 44599999999884
No 88
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=4.8e-17 Score=193.68 Aligned_cols=211 Identities=14% Similarity=0.157 Sum_probs=167.9
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
+.+++..+.+.+||+..... ..+...|..|...|+++.| ..+.|+.|++|+.||.|++|+ +
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldf---h~tep~iliSGSQDg~vK~~D---------------l 163 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDF---HSTEPNILISGSQDGTVKCWD---------------L 163 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeee---ccCCccEEEecCCCceEEEEe---------------e
Confidence 45667788889999877422 2466789999999999655 556677899999999999954 5
Q ss_pred CCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-ceEEEEeccCcCEEEEEECCCCCCC
Q 000781 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEH 636 (1288)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-~~l~~~~~H~~~V~~l~~sp~~~~~ 636 (1288)
+..+.+.++.+....|..+.|+|. .+ ..++++.+.|.+++||++.. ++...|..|.++|.|+.|+|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~----~~----~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn---- 231 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPG----YG----NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN---- 231 (839)
T ss_pred ecccccccccccchhhhceeeccC----CC----ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC----
Confidence 555677888898999999999872 23 79999999999999999865 477889999999999999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCcee--EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-CcEEE
Q 000781 637 PWSDCFLSVGEDFSVALASLETLRV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARER 713 (1288)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~t~~~--l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~ 713 (1288)
+.+||||+.|+.|+|||+.+.+. +.++.. ..+|.+|+|.|+..+.+..|. ..+ |-.|+|||++. .-+-+
T Consensus 232 --r~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcs----mv~-dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCS----MVV-DTSVHVWDVRRPYIPYA 303 (839)
T ss_pred --CceeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhh----ccc-cceEEEEeeccccccce
Confidence 78999999999999999987654 333332 357899999999887665442 233 68999999975 45568
Q ss_pred EEeCCCCceEEeee
Q 000781 714 VLRGTASHSMFDHF 727 (1288)
Q Consensus 714 ~l~GH~~~vi~~~~ 727 (1288)
++..|+..++.+++
T Consensus 304 t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 304 TFLEHTDSVTGIAW 317 (839)
T ss_pred eeeccCccccceec
Confidence 89999977765544
No 89
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=1.3e-14 Score=168.47 Aligned_cols=165 Identities=18% Similarity=0.263 Sum_probs=134.4
Q ss_pred eecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEE
Q 000781 518 ISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1288)
Q Consensus 518 is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SG 597 (1288)
+....|.+..|+.++.||.|++|.....+.. -....+...|.+|...|+.+.|||... +.|+++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------e~~~tPe~~lt~h~eKI~slRfHPLAa--------dvLa~a 696 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLP--------ENEMTPEKILTIHGEKITSLRFHPLAA--------DVLAVA 696 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCC--------cccCCcceeeecccceEEEEEecchhh--------hHhhhh
Confidence 4556777778999999999999886533211 123347788999999999999998543 789999
Q ss_pred ECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce-eEEEecCCCC-CcEEE
Q 000781 598 SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHPN-YPAKV 675 (1288)
Q Consensus 598 s~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~-~l~~l~gH~~-~V~~V 675 (1288)
+.|.+|++||+.+++...+|.+|++.|..++|+|+ |+.+++++.||+|++|..+.++ +++.-.|-.+ .--.|
T Consensus 697 syd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd------Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD------GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred hccceeeeeehhhhhhhheeccCcCceeEEEECCC------CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence 99999999999999999999999999999999999 8999999999999999998764 3444333222 22478
Q ss_pred EEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 676 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 676 ~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
.|--+|+++++.+.| .++. ..|.+||.++
T Consensus 771 ~wacdgr~viv~Gfd--k~Se--RQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFD--KSSE--RQVQMYDAQT 799 (1012)
T ss_pred EEEecCcEEEEeccc--ccch--hhhhhhhhhh
Confidence 899999999999988 4444 6899999875
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=6.4e-16 Score=173.42 Aligned_cols=233 Identities=19% Similarity=0.187 Sum_probs=171.3
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
+.+...+..+++|++...+ .....++.+..+.|+++.|-.++.. ++.+++|+..++|+ +
T Consensus 190 latgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~----~iAas~d~~~r~Wn---------------v 248 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKH----VIAASNDKNLRLWN---------------V 248 (459)
T ss_pred hhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCce----EEeecCCCceeeee---------------c
Confidence 4445567788999987654 2466777888899999999888888 89999999999965 4
Q ss_pred CCceeEEEEecCCcCEEEEEEeeccc-----CCCC-------------------Cc------cCcEEEEEECCCcEEEEe
Q 000781 558 NSHVSRQYFLGHTGAVLCLAAHRMVG-----TAKG-------------------WS------FNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~L~~~p~~~-----SpdG-------------------~~------~~~~L~SGs~D~tI~vWD 607 (1288)
.+.+..++|.||++.|+++.|...+. +.|- .+ ....++||-.|++||+||
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWD 328 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEe
Confidence 45667889999999999999853221 0000 00 012233444444455555
Q ss_pred CCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCC----CCCcEEEEEcCCCCE
Q 000781 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH----PNYPAKVVWDCPRGY 683 (1288)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH----~~~V~~V~~sp~~~~ 683 (1288)
++++.+......| +.|+++..+++ +..+.+.+.|.++++.|+++....+.+..- ....+.+.|+|++.|
T Consensus 329 ~Rs~~~~~sv~~g-g~vtSl~ls~~------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 329 IRSADKTRSVPLG-GRVTSLDLSMD------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred ccCCceeeEeecC-cceeeEeeccC------CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 5555555555444 48999999998 788889999999999999999888877543 124789999999999
Q ss_pred EEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCc--eEEeeeecCccceeeecceeeCcccccCCceeeccCCcEE
Q 000781 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH--SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761 (1288)
Q Consensus 684 L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~--vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr 761 (1288)
+++|+.| |.|+||++.+|+++..+....++ ++++.||+ +|+ ++++..++..++
T Consensus 402 vaAGS~d--------gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-------sG~----------~Llsadk~~~v~ 456 (459)
T KOG0288|consen 402 VAAGSAD--------GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-------SGS----------GLLSADKQKAVT 456 (459)
T ss_pred eeeccCC--------CcEEEEEccCceEEEEeccCCCCcceEEEEEcC-------CCc----------hhhcccCCcceE
Confidence 9976543 89999999999999999876666 77777764 333 456666788888
Q ss_pred EE
Q 000781 762 QS 763 (1288)
Q Consensus 762 ~w 763 (1288)
.|
T Consensus 457 lW 458 (459)
T KOG0288|consen 457 LW 458 (459)
T ss_pred ec
Confidence 88
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1e-15 Score=165.92 Aligned_cols=229 Identities=14% Similarity=0.183 Sum_probs=174.2
Q ss_pred EeecCccceeecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEE
Q 000781 451 VGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVY 530 (1288)
Q Consensus 451 l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~ 530 (1288)
.+.|..+|.|.+..-.. +. .+.+.+.+.+..+|.++.. .....|.+|.+.|+++.|...... +++
T Consensus 143 e~~GHkDGiW~Vaa~~t---qp----i~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~L----~lT 207 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADST---QP----ICGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGLL----LLT 207 (481)
T ss_pred hhcccccceeeehhhcC---Cc----ceeecccccceeEEeeccc----cceeeecccccceeeEEeccccce----EEE
Confidence 34566788898864210 00 2345667889999999876 467888999999999888777666 899
Q ss_pred EEcCCcEEEEEeccc----ccCCCCCCc--------c----cc---------CCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 531 GFFSGEIEVIQFDLF----ERHNSPGAS--------L----KV---------NSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 531 Gs~DG~I~i~~~d~~----~~~~~~~~~--------~----d~---------~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
++.|++-.||.+... .....+..+ + +. .-..++..|.||.+.|.|..|- .
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-----~ 282 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-----A 282 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-----c
Confidence 999999999873111 100000000 0 00 1123677899999999999993 4
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEE
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~ 664 (1288)
.| +.++++|.|.+..+||+++|+.++.+.||....+.+.-.|. ..++++.+.|.+.++||++.. ..+..
T Consensus 283 gg----~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt------QrLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 283 GG----QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT------QRLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred Cc----ceeeeeeccccceeeeeccCceeccccCcchhccccccCCc------ceEEEEeccCceeEeccchhhcceeee
Confidence 55 89999999999999999999999999999999999998888 789999999999999999854 45788
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEEEeCC
Q 000781 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGT 718 (1288)
Q Consensus 665 l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~l~GH 718 (1288)
|+||...|+++.|.-+.+. ++ ++| |.+|+|||++.. ..+.+++-.
T Consensus 353 FQGHtdtVTS~vF~~dd~v-VS-------gSD-DrTvKvWdLrNMRsplATIRtd 398 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDDRV-VS-------GSD-DRTVKVWDLRNMRSPLATIRTD 398 (481)
T ss_pred ecccccceeEEEEecCCce-ee-------cCC-CceEEEeeeccccCcceeeecC
Confidence 9999999999999977654 42 333 699999999874 446666543
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.67 E-value=5.6e-15 Score=158.05 Aligned_cols=205 Identities=17% Similarity=0.183 Sum_probs=166.2
Q ss_pred cccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccC
Q 000781 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1288)
Q Consensus 505 ~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~S 584 (1288)
+++|..+++-+.|-.+... |++++.|....+|.-. +|+.+.++.||+++|+|+...
T Consensus 6 l~GHERplTqiKyN~eGDL----lFscaKD~~~~vw~s~---------------nGerlGty~GHtGavW~~Did----- 61 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDL----LFSCAKDSTPTVWYSL---------------NGERLGTYDGHTGAVWCCDID----- 61 (327)
T ss_pred cccCccccceEEecCCCcE----EEEecCCCCceEEEec---------------CCceeeeecCCCceEEEEEec-----
Confidence 4789999999888777776 9999999999997633 677899999999999999983
Q ss_pred CCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-----CCcEEEEECC--
Q 000781 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-- 657 (1288)
Q Consensus 585 pdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-----DgsV~lWdl~-- 657 (1288)
-+. ..++||+.|.++++||+++|+++..++. ..+|..+.|+++ |++++...+ -+.|.++|++
T Consensus 62 ~~s----~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~------gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 62 WDS----KHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFG------GNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred CCc----ceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccC------CcEEEEEehhhcCcceEEEEEEccCC
Confidence 233 8999999999999999999999999864 568999999998 666555543 4789999998
Q ss_pred -----CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEEEeCCCCceEEeeeecCc
Q 000781 658 -----TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGI 731 (1288)
Q Consensus 658 -----t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~l~GH~~~vi~~~~~~~~ 731 (1288)
..++...++.+.+.++.+.|.|-+++|++|.. ||.|.+||+++| +.+.+.+-|...+....+.++.
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe--------~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~ 202 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE--------DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR 202 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecC--------CCcEEEEEcccCceeeechhhhccccccccccCCc
Confidence 45678888889999999999999999996544 599999999998 5567778888888766665533
Q ss_pred cceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 732 ~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
. ..+...+|.+-+.||...++
T Consensus 203 T-----------------~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 203 T-----------------YFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred c-----------------eEEecccCccceeeecccee
Confidence 2 12233359999999976443
No 93
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=5.6e-16 Score=175.52 Aligned_cols=206 Identities=21% Similarity=0.238 Sum_probs=154.3
Q ss_pred CCEEEEEEcCCcEEEEEecccccCCCCCCcccc------CCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEE
Q 000781 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV------NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS 598 (1288)
Q Consensus 525 p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~------~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs 598 (1288)
++.++.|+.|-.|.||+.|.............. +.++.-..-.||+.+|..|+|+ +++.++|+|||
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n--------~~~~nVLaSgs 263 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN--------RNFRNVLASGS 263 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--------cccceeEEecC
Confidence 444999999999999887654433221111101 1111112235899999999996 56678999999
Q ss_pred CCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEc
Q 000781 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1288)
Q Consensus 599 ~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~s 678 (1288)
.|.||++||+.+|++..++..|++.|.++.|+|.. ...+++||.|++|++.|.|...+....-.-.+.|-.++|+
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence 99999999999999999999999999999999985 6899999999999999999533221111123589999999
Q ss_pred CCCCEEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccC
Q 000781 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHED 757 (1288)
Q Consensus 679 p~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D 757 (1288)
|.....+..+.| ||+||-+|+|. |+++.+++.|.+.|.++.+.. ..++.+.....|
T Consensus 339 ~~se~~f~~~td-------dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~----------------~~p~~l~t~s~d 395 (463)
T KOG0270|consen 339 PHSENSFFVSTD-------DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI----------------QTPGLLSTASTD 395 (463)
T ss_pred CCCceeEEEecC-------CceEEeeecCCCCCceeEEEeccCCcceEEecC----------------CCCcceeecccc
Confidence 987655543333 79999999997 699999999999987765542 223444455569
Q ss_pred CcEEEEeCC
Q 000781 758 GTFRQSQIQ 766 (1288)
Q Consensus 758 ~tvr~w~~~ 766 (1288)
+++++|++.
T Consensus 396 ~~Vklw~~~ 404 (463)
T KOG0270|consen 396 KVVKLWKFD 404 (463)
T ss_pred ceEEEEeec
Confidence 999999864
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.3e-13 Score=143.97 Aligned_cols=209 Identities=17% Similarity=0.192 Sum_probs=163.0
Q ss_pred ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeec
Q 000781 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1288)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~ 581 (1288)
...|.-|.+.|..++|+.+..--...|++| .-|+..|+-- |+..++..+.+.||++.|.++--
T Consensus 129 dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~t-------------dc~~g~~~~a~sghtghilalys--- 191 (350)
T KOG0641|consen 129 DLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYIT-------------DCGRGQGFHALSGHTGHILALYS--- 191 (350)
T ss_pred ceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEe-------------ecCCCCcceeecCCcccEEEEEE---
Confidence 345778999999999987655333224444 3344444322 37788899999999999999852
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec--c-----CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEE
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~--H-----~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lW 654 (1288)
=+| -.++|||+|.+|++||++-..++.++.. | ...|.++++.|. |.++++|-.|.+..+|
T Consensus 192 ---wn~----~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps------grll~sg~~dssc~ly 258 (350)
T KOG0641|consen 192 ---WNG----AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS------GRLLASGHADSSCMLY 258 (350)
T ss_pred ---ecC----cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC------cceeeeccCCCceEEE
Confidence 234 7899999999999999998888877532 2 257999999999 8999999999999999
Q ss_pred ECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC----CcEEEEEeCCCCceEEeeeecC
Q 000781 655 SLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT----GARERVLRGTASHSMFDHFCKG 730 (1288)
Q Consensus 655 dl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t----g~l~~~l~GH~~~vi~~~~~~~ 730 (1288)
|++.+++++.|..|...|.+|.|+|.-.|+++++.| ..|++=|+.. .-.+.....|.+.++.+.+.+.
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd--------~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD--------MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc--------ceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 999999999999999999999999999999987665 7999999863 1235667789999988777642
Q ss_pred ccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 731 ISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 731 ~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
. -++++.+.|.|.-.|-+
T Consensus 331 d-----------------~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 331 D-----------------FSFISSSADKTATLWAL 348 (350)
T ss_pred c-----------------ceeeeccCcceEEEecc
Confidence 1 12344445999999954
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.66 E-value=1e-15 Score=165.94 Aligned_cols=224 Identities=16% Similarity=0.231 Sum_probs=170.5
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccc-cC-CCCCCccccCCc-eeEEEEecCCcCEEEE
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFE-RH-NSPGASLKVNSH-VSRQYFLGHTGAVLCL 576 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~-~~-~~~~~~~d~~t~-~~~~~l~gH~~~V~~L 576 (1288)
.....+..|...+.+..|.++..+ +++|+.|.+|+|.+..... .. .......+...+ ..+++|..|...|++|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~l----vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSL----VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcE----EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 455666889999999888888877 9999999999997653111 10 001111112222 4678999999999999
Q ss_pred EEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEe--ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEE
Q 000781 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1288)
Q Consensus 577 ~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~--~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lW 654 (1288)
.||| .. .+|+||+.|++|+++|+......+.|+ .-..+|+++.|+|. |++++.|-+-.++++|
T Consensus 179 ~FHP-----re----~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 179 DFHP-----RE----TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRLY 243 (430)
T ss_pred eecc-----hh----heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeEE
Confidence 9987 22 799999999999999997654333333 34569999999999 8999999999999999
Q ss_pred ECCCceeEEEe---cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe-CCCCceEEe-eeec
Q 000781 655 SLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFD-HFCK 729 (1288)
Q Consensus 655 dl~t~~~l~~l---~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~-GH~~~vi~~-~~~~ 729 (1288)
|+++.+|.... .+|.+.|++|.+++.+++.++|+.| |.|++||--++++++++. .|.+..++. .|.+
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccC--------CcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 99999987554 4788999999999999999986654 999999999999998874 777666543 2321
Q ss_pred CccceeeecceeeCcccccCCceeeccCCcEEEEeCCc
Q 000781 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1288)
Q Consensus 730 ~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~ 767 (1288)
++.+.+++.. |.+++.|.+..
T Consensus 316 ------------n~kyiLsSG~-----DS~vkLWEi~t 336 (430)
T KOG0640|consen 316 ------------NGKYILSSGK-----DSTVKLWEIST 336 (430)
T ss_pred ------------CCeEEeecCC-----cceeeeeeecC
Confidence 2345555555 99999998753
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=170.20 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=99.7
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEecc----CcCEEEEEECCCCC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH----VAPVRQIILSPPQT 634 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H----~~~V~~l~~sp~~~ 634 (1288)
+..+.+....| +.|++|.. +++| ..+.+.+.|.++.+.|+++.+..+.|..- ..-++.+.|+|+
T Consensus 331 s~~~~~sv~~g-g~vtSl~l-----s~~g----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd-- 398 (459)
T KOG0288|consen 331 SADKTRSVPLG-GRVTSLDL-----SMDG----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD-- 398 (459)
T ss_pred CCceeeEeecC-cceeeEee-----ccCC----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC--
Confidence 33445555555 48999988 4677 78888899999999999999888777542 224889999999
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC--CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~--~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
+.|+++||.||+|.||++.++++...+..... .|+++.|+|.|.+|+. +|.++.+.+|
T Consensus 399 ----~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls--------adk~~~v~lW 458 (459)
T KOG0288|consen 399 ----GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS--------ADKQKAVTLW 458 (459)
T ss_pred ----CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc--------ccCCcceEec
Confidence 89999999999999999999999888765443 5999999999999984 4556899999
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.65 E-value=2.4e-15 Score=159.21 Aligned_cols=219 Identities=19% Similarity=0.250 Sum_probs=173.5
Q ss_pred cccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCC
Q 000781 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t 559 (1288)
..+.+=+.++|+.... ....+| .|...|.+++|..+..+ |++|+.+.-++|.+.+ .+
T Consensus 76 saaadftakvw~a~tg----delhsf-~hkhivk~~af~~ds~~----lltgg~ekllrvfdln--~p------------ 132 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTG----DELHSF-EHKHIVKAVAFSQDSNY----LLTGGQEKLLRVFDLN--RP------------ 132 (334)
T ss_pred hhcccchhhhhhhhhh----hhhhhh-hhhheeeeEEecccchh----hhccchHHHhhhhhcc--CC------------
Confidence 3445667899998764 344444 37788999999998888 9999999999994433 21
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
..+...+.||++.|..+.|+. . ++.++|...|++||+||.++|+.++++. ...+|+++.++++ |
T Consensus 133 ~App~E~~ghtg~Ir~v~wc~----e-----D~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~d------G 196 (334)
T KOG0278|consen 133 KAPPKEISGHTGGIRTVLWCH----E-----DKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQD------G 196 (334)
T ss_pred CCCchhhcCCCCcceeEEEec----c-----CceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccC------C
Confidence 114567889999999999962 1 3678888999999999999999999885 4568999999998 5
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEE-eCC
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGT 718 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l-~GH 718 (1288)
+ +++.+.-++|++||..+...+..+.- ..-|.+...+|+..++++|+. |..++.+|..||+.+..+ .||
T Consensus 197 ~-ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGge--------d~~~~kfDy~TgeEi~~~nkgh 266 (334)
T KOG0278|consen 197 R-ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGE--------DFKVYKFDYNTGEEIGSYNKGH 266 (334)
T ss_pred C-EEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCc--------ceEEEEEeccCCceeeecccCC
Confidence 5 66777888999999999988877753 346888999999999887554 489999999999998886 899
Q ss_pred CCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 719 ~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
-++|-++.|.++.. ...+|+ +|||+|+|.
T Consensus 267 ~gpVhcVrFSPdGE-~yAsGS----------------EDGTirlWQ 295 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGE-LYASGS----------------EDGTIRLWQ 295 (334)
T ss_pred CCceEEEEECCCCc-eeeccC----------------CCceEEEEE
Confidence 99999988876322 223343 699999995
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=151.00 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=164.4
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
+.|.+.|.|.++.+.... +++|+.|..|++..|+..... .++ .-..|.-|.+.|..++|--.. +.
T Consensus 86 khhkgsiyc~~ws~~gel----iatgsndk~ik~l~fn~dt~~---------~~g-~dle~nmhdgtirdl~fld~~-~s 150 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGEL----IATGSNDKTIKVLPFNADTCN---------ATG-HDLEFNMHDGTIRDLAFLDDP-ES 150 (350)
T ss_pred cccCccEEEEEecCccCe----EEecCCCceEEEEeccccccc---------ccC-cceeeeecCCceeeeEEecCC-Cc
Confidence 678999999777666665 999999999999888632210 011 234577899999999994311 12
Q ss_pred CCCccCcEEEEEE-CCCcEEEEeCCCCceEEEEeccCcCEEEEE-ECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE
Q 000781 586 KGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1288)
Q Consensus 586 dG~~~~~~L~SGs-~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~-~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~ 663 (1288)
.| .+|+|++ .|+.|.+=|..+|+.++.+.+|++-|.++- |+ +-.|++|+.|.+|++||++-..|+.
T Consensus 151 ~~----~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--------~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 151 GG----AILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--------GAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred Cc----eEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--------CcEEEccCCCceEEEEeeeccceee
Confidence 33 7888876 588999999999999999999999998874 43 6799999999999999999999988
Q ss_pred EecC--C-----CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceee
Q 000781 664 MFPG--H-----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1288)
Q Consensus 664 ~l~g--H-----~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~ 736 (1288)
++.. | .+.|.+|+..|.|++|++|..| .+..+||++.|..++.+..|++.+-++.|.+..
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~d--------ssc~lydirg~r~iq~f~phsadir~vrfsp~a----- 285 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD--------SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA----- 285 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCC--------CceEEEEeeCCceeeeeCCCccceeEEEeCCCc-----
Confidence 7742 2 2468999999999999976544 788999999999999999999999988887532
Q ss_pred ecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 737 sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
-+.+..++ |.+||+-+++
T Consensus 286 -------~yllt~sy-----d~~ikltdlq 303 (350)
T KOG0641|consen 286 -------HYLLTCSY-----DMKIKLTDLQ 303 (350)
T ss_pred -------eEEEEecc-----cceEEEeecc
Confidence 12333334 9999998865
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.8e-15 Score=160.12 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=155.2
Q ss_pred cccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEE-eecccCCCCCccCcEEEEEECC
Q 000781 522 FYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMD 600 (1288)
Q Consensus 522 ~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~-~p~~~SpdG~~~~~~L~SGs~D 600 (1288)
.|...+|++++.|++|+|....... ..+.+..|.||.++|+.++| ||. +..+|+|++-|
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wahPk--------~G~iLAScsYD 79 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWAHPK--------FGTILASCSYD 79 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeecccc--------cCcEeeEeecC
Confidence 4455569999999999995433211 12478899999999999999 442 23899999999
Q ss_pred CcEEEEeCCCCc--eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc---eeEEEecCCCCCcEEE
Q 000781 601 CSIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKV 675 (1288)
Q Consensus 601 ~tI~vWDl~tg~--~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~---~~l~~l~gH~~~V~~V 675 (1288)
+.|.||.-..|+ ..+.+..|...|++++|.|.+. |-.|+++|.||.|.|.+.+.. ........|.-.|++|
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 999999988875 3456788999999999999854 789999999999999998864 2234567899999999
Q ss_pred EEcCC---C-----------CEEEEEecCCCcccCCCCeEEEEECCCC--cEEEEEeCCCCceEEeeeecCccceeeecc
Q 000781 676 VWDCP---R-----------GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1288)
Q Consensus 676 ~~sp~---~-----------~~L~tg~~D~sgssD~DgtV~VWDl~tg--~l~~~l~GH~~~vi~~~~~~~~~~~~~sgs 739 (1288)
.|.|. | ..|++|+ .|+.|+||+...+ .+.+++.+|.+-|.-+.+||.+..
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgG--------cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl------ 221 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGG--------CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL------ 221 (299)
T ss_pred eecCcCCCccccccCcccccceeeccC--------CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC------
Confidence 99986 4 3466533 3589999999875 456889999999988888875432
Q ss_pred eeeCcccccCCceeeccCCcEEEEeC
Q 000781 740 VLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 740 i~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
.-.-+.++.+|+++-+|..
T Consensus 222 -------~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 222 -------PKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred -------CceeeEEecCCCcEEEEEe
Confidence 1223445667999999964
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.3e-16 Score=186.51 Aligned_cols=185 Identities=20% Similarity=0.217 Sum_probs=164.8
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
..|.+|...|-|+.|-..... ++.|+.+|+|++| |++..+.+++|.||...+..+.|||
T Consensus 64 ~S~~~hespIeSl~f~~~E~L----laagsasgtiK~w---------------DleeAk~vrtLtgh~~~~~sv~f~P-- 122 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERL----LAAGSASGTIKVW---------------DLEEAKIVRTLTGHLLNITSVDFHP-- 122 (825)
T ss_pred heeeccCCcceeeecCcchhh----hcccccCCceeee---------------ehhhhhhhhhhhccccCcceeeecc--
Confidence 357899999999888777777 9999999999994 3667778899999999999999975
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeE
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l 662 (1288)
-| .+.++|+.|+.+++||++...|.+.+.+|...|.++.|+|+ |.+++++++|.+++|||+..|+..
T Consensus 123 ---~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 123 ---YG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred ---ce----EEeccccccccceehhhhccCceeeecCCcceeEEEeecCC------CceeeccCCcceeeeecccccccc
Confidence 45 78899999999999999999999999999999999999999 899999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 663 ~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
..|.+|...+..+.|+|..-.+..|+. |++|++||++|.+.+-...+....|.+..|.+
T Consensus 190 ~ef~~~e~~v~sle~hp~e~Lla~Gs~--------d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLEVLLAPGSS--------DRTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred cccccccccccccccCchhhhhccCCC--------CceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 999999999999999998877775433 48999999999999888887777787776654
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=9.8e-16 Score=170.20 Aligned_cols=172 Identities=22% Similarity=0.222 Sum_probs=131.8
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
..+.+|.+|.+.=.++.+.+.. -..+++|---+.|++|.... +.|-+. ..-|.+|+..|-.|+|+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~---~g~LlsGDc~~~I~lw~~~~--------g~W~vd----~~Pf~gH~~SVEDLqWS 266 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIK---TGRLLSGDCVKGIHLWEPST--------GSWKVD----QRPFTGHTKSVEDLQWS 266 (440)
T ss_pred CceEEecccCccceeeeccccc---ccccccCccccceEeeeecc--------Cceeec----CccccccccchhhhccC
Confidence 5678889999888884443311 11277776667888865432 234332 24567899999999997
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCC---ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEEC
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg---~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1288)
|.+ +..|+|||.|++|+|||++.+ .++. .+.|.+-|+.|.|+.. -.+|++|++||+++||||
T Consensus 267 ptE--------~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~------~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 267 PTE--------DGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRR------EPLLASGGDDGTLSIWDL 331 (440)
T ss_pred Ccc--------CceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCC------cceeeecCCCceEEEEEh
Confidence 732 269999999999999999988 3443 3889999999999987 458999999999999999
Q ss_pred CC---ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 657 ET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 657 ~t---~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
|. ++++..|..|..+|++|.|+|.....+. .++.|..|.+||+..
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia-------asg~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA-------ASGEDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEE-------eccCCCcEEEEEeec
Confidence 85 5688999999999999999997765552 223368999999853
No 102
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.1e-15 Score=170.51 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=172.4
Q ss_pred ccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcee
Q 000781 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~ 562 (1288)
..+.+.+|.+... .+...+.+|=+.|+|+.|..+... +++|+.||.|.+|.......+. +-.+.++
T Consensus 101 i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~----iiTgskDg~V~vW~l~~lv~a~------~~~~~~p 166 (476)
T KOG0646|consen 101 ISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSH----IITGSKDGAVLVWLLTDLVSAD------NDHSVKP 166 (476)
T ss_pred ccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcE----EEecCCCccEEEEEEEeecccc------cCCCccc
Confidence 4566778887654 677888999999999999999998 9999999999998864433321 1224568
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEE
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l 642 (1288)
.+.+.+|+-+|+++... +.| -+.+++|+|.|.++|+||+..|.++.++. ...++.++++.|. +..+
T Consensus 167 ~~~f~~HtlsITDl~ig-----~Gg--~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa------e~~~ 232 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIG-----SGG--TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA------ERVV 232 (476)
T ss_pred eeeeccCcceeEEEEec-----CCC--ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc------ccEE
Confidence 99999999999999984 333 34699999999999999999999988874 4578999999998 7889
Q ss_pred EEEECCCcEEEEECCCc----------------eeEEEecCCCC--CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 643 LSVGEDFSVALASLETL----------------RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 643 ~Sgs~DgsV~lWdl~t~----------------~~l~~l~gH~~--~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
..|..||.|.+.++... ..+..+.||.+ .|+|++.+-||..|++ +|.||.|+||
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS--------Gd~dg~VcvW 304 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS--------GDEDGKVCVW 304 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe--------eCCCCCEEEE
Confidence 99999999999887532 34567889998 9999999999999995 4556999999
Q ss_pred ECCCCcEEEEEeCCCCceEEeee
Q 000781 705 DVKTGARERVLRGTASHSMFDHF 727 (1288)
Q Consensus 705 Dl~tg~l~~~l~GH~~~vi~~~~ 727 (1288)
|+.+.+++|++..-.++|+.+++
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ecchHHHHHHHhhhccccceeEe
Confidence 99999999998877777876644
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.63 E-value=3e-14 Score=163.33 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=145.0
Q ss_pred ccCCCcEEEEEeeecCcccCC---EEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEe-----cCCcCEEEEE
Q 000781 506 VHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-----GHTGAVLCLA 577 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~---~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~-----gH~~~V~~L~ 577 (1288)
.+|...++| ..|+|. .+++.+.||++++|+.+.... ..++++ |-.-.|+..+
T Consensus 265 KGHia~lt~------g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------------q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 265 KGHIAELTC------GCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------------QLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CCceeeeec------cccccCcccceEEecCCCcEEEEecCCchh--------------heeEEeeccCCCcccCceeee
Confidence 678889998 555554 389999999999977653321 222332 3345688889
Q ss_pred EeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc---eEEEEeccCc--CEEEEEECCCCCCCCCCCEEEEEECCCcEE
Q 000781 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1288)
Q Consensus 578 ~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~---~l~~~~~H~~--~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~ 652 (1288)
| ++|| .+||.|..||+|.+||..... ..+.-..|.. .|+||.|+++ |++|+|-+.|.+++
T Consensus 325 ~-----nrdg----~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d------g~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 325 W-----NRDG----KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD------GNYLLSRGFDDTLK 389 (641)
T ss_pred c-----CCCc----chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc------cchhhhccCCCcee
Confidence 9 4688 999999999999999975432 1233456877 8999999999 89999999999999
Q ss_pred EEECCCc-eeEEEecCCCC--CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 653 LASLETL-RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 653 lWdl~t~-~~l~~l~gH~~--~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+|||+.. +++....+-.. +-+.++|+|+.++|++|..-.-+. .-|+++++|..|-+.++.+.-..+.|..+.|.+
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~--~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM--TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC--CCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 9999974 56776665443 447899999999999986542223 337999999999999988877788888877876
Q ss_pred Ccc
Q 000781 730 GIS 732 (1288)
Q Consensus 730 ~~~ 732 (1288)
.+.
T Consensus 468 kLN 470 (641)
T KOG0772|consen 468 KLN 470 (641)
T ss_pred hhh
Confidence 554
No 104
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.62 E-value=7.7e-15 Score=163.17 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=155.1
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCcc-ccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASL-KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~-d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
.++=++.|.|.||+......+....+.- .....+++.++.+|.+.=+.|+|+| ...| .|+||..-+.|++|
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp---~~~g-----~LlsGDc~~~I~lw 239 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP---IKTG-----RLLSGDCVKGIHLW 239 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc---cccc-----ccccCccccceEee
Confidence 4555678999998764433332211111 1134558999999999999999987 2344 68999999999999
Q ss_pred eCCCCceE---EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc---eeEEEecCCCCCcEEEEEcCC
Q 000781 607 DLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVVWDCP 680 (1288)
Q Consensus 607 Dl~tg~~l---~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~---~~l~~l~gH~~~V~~V~~sp~ 680 (1288)
...+|.-. ..|.+|+..|-.+.|+|.+ ...|+|||.||+|+|||+|.+ .++.+ ..|.+.|+.|.|+..
T Consensus 240 ~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-----~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 240 EPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-----DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR 313 (440)
T ss_pred eeccCceeecCccccccccchhhhccCCcc-----CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC
Confidence 99887643 4588899999999999985 579999999999999999988 45544 889999999999998
Q ss_pred CCEEEEEecCCCcccCCCCeEEEEECCC---CcEEEEEeCCCCceEEeeeecCccce-eeecceeeCcccccCCceeecc
Q 000781 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMN-SISGSVLNGNTSVSSLLLPIHE 756 (1288)
Q Consensus 681 ~~~L~tg~~D~sgssD~DgtV~VWDl~t---g~l~~~l~GH~~~vi~~~~~~~~~~~-~~sgsi~~w~~~~s~~l~~~~~ 756 (1288)
..+|++ ++.||+++|||+|+ ++.+.+++-|.++|+++.|.+.-... ..+| .
T Consensus 314 ~~lLas--------G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-----------------~ 368 (440)
T KOG0302|consen 314 EPLLAS--------GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-----------------E 368 (440)
T ss_pred cceeee--------cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-----------------C
Confidence 887774 33369999999975 78899999999999999888643221 2222 4
Q ss_pred CCcEEEEeCC
Q 000781 757 DGTFRQSQIQ 766 (1288)
Q Consensus 757 D~tvr~w~~~ 766 (1288)
|+++-+|++.
T Consensus 369 D~QitiWDls 378 (440)
T KOG0302|consen 369 DNQITIWDLS 378 (440)
T ss_pred CCcEEEEEee
Confidence 9999999974
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=9.7e-15 Score=173.27 Aligned_cols=197 Identities=20% Similarity=0.187 Sum_probs=161.6
Q ss_pred ccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEE
Q 000781 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1288)
Q Consensus 486 ~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~ 565 (1288)
.+-+|+..... ....+.-+...|+++.+..+..+ |+.|..+|.+.||+ .++.+....
T Consensus 198 ~vylW~~~s~~----v~~l~~~~~~~vtSv~ws~~G~~----LavG~~~g~v~iwD---------------~~~~k~~~~ 254 (484)
T KOG0305|consen 198 SVYLWSASSGS----VTELCSFGEELVTSVKWSPDGSH----LAVGTSDGTVQIWD---------------VKEQKKTRT 254 (484)
T ss_pred eEEEEecCCCc----eEEeEecCCCceEEEEECCCCCE----EEEeecCCeEEEEe---------------hhhcccccc
Confidence 45566655442 12222233789999888888888 99999999999944 556667788
Q ss_pred Eec-CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEE-EeccCcCEEEEEECCCCCCCCCCCEEE
Q 000781 566 FLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1288)
Q Consensus 566 l~g-H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~-~~~H~~~V~~l~~sp~~~~~~~g~~l~ 643 (1288)
+.+ |..+|.|++|. + ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+++ +.+++
T Consensus 255 ~~~~h~~rvg~laW~-------~----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d------~~~lA 317 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN-------S----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD------GNQLA 317 (484)
T ss_pred ccCCcCceeEEEecc-------C----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC------CCeec
Confidence 888 99999999994 2 7899999999999999998876555 8899999999999999 89999
Q ss_pred EEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCC-CCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCce
Q 000781 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1288)
Q Consensus 644 Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~-~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~v 722 (1288)
||+.|+.+.|||....++...+..|.+.|.+++|+|- ...|++|+ +..|++|++||..+|++++.+.... .|
T Consensus 318 SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG------Gs~D~~i~fwn~~~g~~i~~vdtgs-QV 390 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG------GSADRCIKFWNTNTGARIDSVDTGS-QV 390 (484)
T ss_pred cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC------CCcccEEEEEEcCCCcEecccccCC-ce
Confidence 9999999999999999999999999999999999994 56788754 3446899999999999998876443 55
Q ss_pred EEeeeec
Q 000781 723 MFDHFCK 729 (1288)
Q Consensus 723 i~~~~~~ 729 (1288)
-.+.|.+
T Consensus 391 csL~Wsk 397 (484)
T KOG0305|consen 391 CSLIWSK 397 (484)
T ss_pred eeEEEcC
Confidence 5565654
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.62 E-value=7.2e-15 Score=165.72 Aligned_cols=178 Identities=18% Similarity=0.171 Sum_probs=153.5
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
+....|.||...|+.+.+..+... +++++.|..|+||.. .........+.|.++|+.+..|
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~----v~~aSad~~i~vws~---------------~~~s~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDT----VITASADEIIRVWSV---------------PLSSEPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhh----eeecCCcceEEeecc---------------ccccCccccccccccceeeeec
Confidence 677889999999999888777776 899999999999653 2223456678899999999997
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccC--cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~--~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
|.| .+|++++.|++..+.|+++|.++.+....+ -.+++..|+|| |..|.+|..|+.|++||+.
T Consensus 313 -----~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD------gLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 313 -----PTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD------GLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred -----cCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC------ceEEeccCCCceEEEEEcC
Confidence 577 999999999999999999999887765432 25899999999 8999999999999999999
Q ss_pred CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 658 t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
.+..+..|++|.++|..|+|+.+|-||++++.| +.|++||+|.-+..+++.-..
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add--------~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADD--------GSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecC--------CeEEEEEehhhcccceeeccc
Confidence 999999999999999999999999999987654 789999999888777776444
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.62 E-value=9.3e-15 Score=164.84 Aligned_cols=200 Identities=18% Similarity=0.208 Sum_probs=162.2
Q ss_pred cEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCcc
Q 000781 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1288)
Q Consensus 511 ~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~ 590 (1288)
.++++...+...+ +++|+.|....+.+ .++++.+..|+||+..|+.+.||| +.
T Consensus 221 gi~ald~~~s~~~----ilTGG~d~~av~~d---------------~~s~q~l~~~~Gh~kki~~v~~~~-----~~--- 273 (506)
T KOG0289|consen 221 GITALDIIPSSSK----ILTGGEDKTAVLFD---------------KPSNQILATLKGHTKKITSVKFHK-----DL--- 273 (506)
T ss_pred CeeEEeecCCCCc----ceecCCCCceEEEe---------------cchhhhhhhccCcceEEEEEEecc-----ch---
Confidence 5566555554344 89999999998843 456678899999999999999975 44
Q ss_pred CcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC
Q 000781 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1288)
Q Consensus 591 ~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~ 670 (1288)
..+++++.|..|++|.............|.++|+.+..+|. |+||++++.|++..+.|+++++++.......+
T Consensus 274 -~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s 346 (506)
T KOG0289|consen 274 -DTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------GEYLLSASNDGTWAFSDISSGSQLTVVSDETS 346 (506)
T ss_pred -hheeecCCcceEEeeccccccCccccccccccceeeeeccC------CcEEEEecCCceEEEEEccCCcEEEEEeeccc
Confidence 78999999999999999888777888899999999999999 89999999999999999999999876653223
Q ss_pred --CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCccccc
Q 000781 671 --YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVS 748 (1288)
Q Consensus 671 --~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s 748 (1288)
.+++.+|+|||..+.+|.. |+.|+|||++.+..+..|.||+++|..+.|.. .|- +
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~--------d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-------NGY-----~--- 403 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTP--------DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-------NGY-----W--- 403 (506)
T ss_pred cceeEEeeEcCCceEEeccCC--------CceEEEEEcCCccccccCCCCCCceeEEEecc-------Cce-----E---
Confidence 4689999999999886543 48999999999999999999999999887752 111 1
Q ss_pred CCceeeccCCcEEEEeCCccc
Q 000781 749 SLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 749 ~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
+.....|+.|+.||+|...
T Consensus 404 --Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 404 --LATAADDGSVKLWDLRKLK 422 (506)
T ss_pred --EEEEecCCeEEEEEehhhc
Confidence 1222346679999998554
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.5e-11 Score=145.92 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=159.2
Q ss_pred eEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeecc-ccceEEeEeccccccccCcccccccccccCcccc
Q 000781 18 RVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGH-SAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1288)
Q Consensus 18 ~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH-~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~ 96 (1288)
.|+|+|++.+.+.||.+=.||.|.+|++.. + .-....+.|| ...|-+|+++
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~--w~~~~vi~g~~drsIE~L~W~------------------------ 78 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--N--WFLEPVIHGPEDRSIESLAWA------------------------ 78 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCC--C--ceeeEEEecCCCCceeeEEEc------------------------
Confidence 699999999999999999999999999995 3 2233345555 4778888653
Q ss_pred cccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeC--CCCCceEEEE-------eeccCCccccccc
Q 000781 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP--SNPRYVCIGC-------CFIDTNQLSDHHS 167 (1288)
Q Consensus 97 ~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~--~~~~~~~l~c-------~g~~~~~~~~~~~ 167 (1288)
++.+|+|++.+|+|+=||+.+++-+...... ...|..+. +......+.| .......+....+
T Consensus 79 ----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 79 ----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred ----cCCeEEeecCCceEEEEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee
Confidence 4689999999999999999999876554322 12222222 1112222222 1222344445566
Q ss_pred cccccccccc--ccccCC--CCCCCCceEEEEecCCceEEE--EEecccccc-CC--ceEEEEEeccCCCCcceEEEEec
Q 000781 168 FESVEGDLVS--EDKEVP--MKNPPKCTLVIVDTYGLTIVQ--TVFHGNLSI-GP--WKFMDVVSLGEDMGKHYGLMVDS 238 (1288)
Q Consensus 168 ~~~~~g~~~~--~d~~~~--~~~~~~~~I~i~D~~tl~vl~--~~~~~~~~~-~~--is~l~v~~~~~~~~~~~~lls~s 238 (1288)
+...+|++.+ ++.+.. ..+..++.|.+||..++..++ ++.-..+.. .+ |.++.|++ +++|+++.
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------d~tI~sgD 222 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------DSTIASGD 222 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-------cCcEEEec
Confidence 6666677754 555444 888899999999998886655 222222333 33 78888886 45899999
Q ss_pred CCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCceEEee
Q 000781 239 VGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRL 305 (1288)
Q Consensus 239 ~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~i~~~ 305 (1288)
..|.+++||....+ .+.....|.+.|.+++.+++++++...+-++.++.+
T Consensus 223 S~G~V~FWd~~~gT-----------------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGT-----------------LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred CCceEEEEcccCcc-----------------hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 99999999988752 333456777888999999999999988888876555
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.61 E-value=7.4e-12 Score=143.72 Aligned_cols=367 Identities=17% Similarity=0.119 Sum_probs=215.5
Q ss_pred CCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCccccc
Q 000781 185 KNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKS 264 (1288)
Q Consensus 185 ~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~~ 264 (1288)
+++.-..++|||..++..++.+-- ....|++++|+.. +++..-..+-.+.+.++.||+-...+ ..+
T Consensus 129 g~~~~phvriWdsv~L~TL~V~g~---f~~GV~~vaFsk~--~~G~~l~~vD~s~~h~lSVWdWqk~~---~~~------ 194 (626)
T KOG2106|consen 129 GRPLQPHVRIWDSVTLSTLHVIGF---FDRGVTCVAFSKI--NGGSLLCAVDDSNPHMLSVWDWQKKA---KLG------ 194 (626)
T ss_pred CCcCCCeeeecccccceeeeeecc---ccccceeeeeccc--CCCceEEEecCCCccccchhhchhhh---ccC------
Confidence 345568999999999887777664 3345999999976 55433344445677899999988742 111
Q ss_pred CcccceeEeecCcccCceEEEEecCC-CEEEEEecCceEEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeeccc
Q 000781 265 SSQLDMAILQNGVVEGGHLVSVATCG-NIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVV 343 (1288)
Q Consensus 265 ~~~~~~v~~~~~~~~~v~~Vs~s~dg-~~i~~v~~~~~i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d 343 (1288)
.+ ....+.+-...|.|-+ +.+++..+.+-.|+-++.+.+... .-..+..++ .++....|.+.+|
T Consensus 195 -----~v---k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~------~~~fek~ek-k~Vl~v~F~engd 259 (626)
T KOG2106|consen 195 -----PV---KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR------QGIFEKREK-KFVLCVTFLENGD 259 (626)
T ss_pred -----cc---eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE------eeccccccc-eEEEEEEEcCCCC
Confidence 11 2223344555665544 566666655555555465533322 222233333 6788888984444
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEeeeeecccc
Q 000781 344 AEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVE 423 (1288)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~s~~~~~~ 423 (1288)
+++++++|.+.||.... +.+...... ++
T Consensus 260 -----------------viTgDS~G~i~Iw~~~~----------~~~~k~~~a-------------------------H~ 287 (626)
T KOG2106|consen 260 -----------------VITGDSGGNILIWSKGT----------NRISKQVHA-------------------------HD 287 (626)
T ss_pred -----------------EEeecCCceEEEEeCCC----------ceEEeEeee-------------------------cC
Confidence 78889999999997643 222111111 11
Q ss_pred ccccccCeEEEEecccCCCCCCcceeEEeecCccce---eecCccccCCCCCcccCccccccccCccccccccCCCCCCC
Q 000781 424 ETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD---WVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGD 500 (1288)
Q Consensus 424 ~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~---W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~ 500 (1288)
+. +|.++.-. .-+|++|+.+.. |+..-.. +. +.+-+...|.
T Consensus 288 gg--------v~~L~~lr------~GtllSGgKDRki~~Wd~~y~k-~r---------------------~~elPe~~G~ 331 (626)
T KOG2106|consen 288 GG--------VFSLCMLR------DGTLLSGGKDRKIILWDDNYRK-LR---------------------ETELPEQFGP 331 (626)
T ss_pred Cc--------eEEEEEec------CccEeecCccceEEeccccccc-cc---------------------cccCchhcCC
Confidence 21 11111111 113444544333 5422100 00 0011111111
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
......++.+ ++.|.....|.--. ++++ ......||....+.++.||
T Consensus 332 iRtv~e~~~d-----------------i~vGTtrN~iL~Gt---------------~~~~-f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 332 IRTVAEGKGD-----------------ILVGTTRNFILQGT---------------LENG-FTLTVQGHGDELWGLATHP 378 (626)
T ss_pred eeEEecCCCc-----------------EEEeeccceEEEee---------------ecCC-ceEEEEecccceeeEEcCC
Confidence 1111122222 34443333332211 2222 2344569999999999975
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
+. ++++|++.|+.+++|+ ..++.-+- --..++.|+.|.|. | .++.|...|...+.|.++..
T Consensus 379 -----s~----~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhps------g-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 379 -----SK----NQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPS------G-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred -----Ch----hheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCc------c-eEEEeeccceEEEEecccce
Confidence 33 7899999999999999 33333222 23578999999998 7 89999999999999999966
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeC-CCCceEEeeeec
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRG-TASHSMFDHFCK 729 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~G-H~~~vi~~~~~~ 729 (1288)
.+..-.. ..++++|+|+|+|.+|++|+.| +.||||-+.. |.......- |.++++-+.|+.
T Consensus 440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d--------~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHD--------NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred eEEEEec-CCceEEEEEcCCCCEEEEecCC--------CeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 5544333 6789999999999999997765 8999998864 444333222 226666666653
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.61 E-value=2e-14 Score=152.25 Aligned_cols=178 Identities=15% Similarity=0.171 Sum_probs=141.4
Q ss_pred ccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEE
Q 000781 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 565 (1288)
Q Consensus 486 ~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~ 565 (1288)
++++++...++. ....+.+|.+.|..+.|.....- +++...|++|++| |+.+++.++.
T Consensus 123 llrvfdln~p~A---pp~E~~ghtg~Ir~v~wc~eD~~----iLSSadd~tVRLW---------------D~rTgt~v~s 180 (334)
T KOG0278|consen 123 LLRVFDLNRPKA---PPKEISGHTGGIRTVLWCHEDKC----ILSSADDKTVRLW---------------DHRTGTEVQS 180 (334)
T ss_pred HhhhhhccCCCC---CchhhcCCCCcceeEEEeccCce----EEeeccCCceEEE---------------EeccCcEEEE
Confidence 344555544432 33557889999988777766654 7888999999993 3778888888
Q ss_pred EecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEE
Q 000781 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1288)
Q Consensus 566 l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sg 645 (1288)
|. -...|+++.++ +|| + +++-..-++|++||..+-..++.++.- -.|.+..+.|+ ...+++|
T Consensus 181 L~-~~s~VtSlEvs-----~dG----~-ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~------k~~fVaG 242 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVS-----QDG----R-ILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPK------KEFFVAG 242 (334)
T ss_pred Ee-cCCCCcceeec-----cCC----C-EEEEecCceeEEeccccccceeeccCc-cccccccccCC------CceEEec
Confidence 76 36789999994 577 4 555566789999999998888877543 45888888998 6899999
Q ss_pred ECCCcEEEEECCCceeEEEe-cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 646 GEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 646 s~DgsV~lWdl~t~~~l~~l-~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
+.|..+..||..++..+..+ .||.++|.||.|+|+|..-++|+. ||+||+|++.-++.
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE--------DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE--------DGTIRLWQTTPGKT 301 (334)
T ss_pred CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC--------CceEEEEEecCCCc
Confidence 99999999999999998886 899999999999999998885444 59999999876553
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=164.15 Aligned_cols=223 Identities=16% Similarity=0.202 Sum_probs=172.4
Q ss_pred CccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEE
Q 000781 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1288)
Q Consensus 485 s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~ 564 (1288)
..+.+|........ ...---.+.|.|+.-.+...| ++.|...|.|++|. +.+|..+.
T Consensus 61 p~l~vw~i~k~~~~----~q~~v~Pg~v~al~s~n~G~~----l~ag~i~g~lYlWe---------------lssG~LL~ 117 (476)
T KOG0646|consen 61 PLLHVWEILKKDQV----VQYIVLPGPVHALASSNLGYF----LLAGTISGNLYLWE---------------LSSGILLN 117 (476)
T ss_pred ccccccccCchhhh----hhhcccccceeeeecCCCceE----EEeecccCcEEEEE---------------eccccHHH
Confidence 36677776654321 111223467888666666666 77777999999954 66888999
Q ss_pred EEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC---------CCceEEEEeccCcCEEEEEECCCCCC
Q 000781 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTE 635 (1288)
Q Consensus 565 ~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~---------tg~~l~~~~~H~~~V~~l~~sp~~~~ 635 (1288)
.+.+|-..|+|+.| +-|| .+|+|||.||.|.+|++. +-++++.|..|+-+|+++...+.++
T Consensus 118 v~~aHYQ~ITcL~f-----s~dg----s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~- 187 (476)
T KOG0646|consen 118 VLSAHYQSITCLKF-----SDDG----SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT- 187 (476)
T ss_pred HHHhhccceeEEEE-----eCCC----cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc-
Confidence 99999999999999 4677 999999999999999864 3468899999999999999988744
Q ss_pred CCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-------
Q 000781 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT------- 708 (1288)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t------- 708 (1288)
...++|+|.|+++|+||+..+..+.++.- ...+.+++.+|.+..+++|..+ |.|.+-++.+
T Consensus 188 ---~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~--------G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 188 ---NARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEE--------GKIFQNLLFKLSGQSAG 255 (476)
T ss_pred ---cceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCc--------ceEEeeehhcCCccccc
Confidence 56899999999999999999999887753 4578999999999999986543 8888887643
Q ss_pred ---------CcEEEEEeCCCC--ceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 709 ---------GARERVLRGTAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 709 ---------g~l~~~l~GH~~--~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
++.++.+.||.. .|+++..|. +|+ .++++. +|+++++|++...+
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-------Dgt-----lLlSGd-----~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHENESAITCLAIST-------DGT-----LLLSGD-----EDGKVCVWDIYSKQ 310 (476)
T ss_pred ccccccccccceeeeeccccCCcceeEEEEec-------Ccc-----EEEeeC-----CCCCEEEEecchHH
Confidence 234577889998 887776653 444 333444 49999999986433
No 112
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-12 Score=142.22 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=96.6
Q ss_pred ceeeEEeeccccceEEeEeccccccccCcccccccccccCcccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCC
Q 000781 53 IKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPP 132 (1288)
Q Consensus 53 ~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~ 132 (1288)
.+|.+.+..-...|+++.| +++|.+|+++++|.+|+|+|..+|++.+.....
T Consensus 4 ~~~ak~f~~~~~~i~sl~f---------------------------s~~G~~litss~dDsl~LYd~~~g~~~~ti~sk- 55 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDF---------------------------SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK- 55 (311)
T ss_pred cccccccccCCCceeEEEe---------------------------cCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-
Confidence 3455555555677899955 778999999999999999999999998776443
Q ss_pred CcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccc
Q 000781 133 WVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS 212 (1288)
Q Consensus 133 ~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~ 212 (1288)
. +....+++.+.. .++.++.. ..+.+|+.++.++.+.+..+.+ |
T Consensus 56 k-yG~~~~~Fth~~---~~~i~sSt-----------------------------k~d~tIryLsl~dNkylRYF~G---H 99 (311)
T KOG1446|consen 56 K-YGVDLACFTHHS---NTVIHSST-----------------------------KEDDTIRYLSLHDNKYLRYFPG---H 99 (311)
T ss_pred c-ccccEEEEecCC---ceEEEccC-----------------------------CCCCceEEEEeecCceEEEcCC---C
Confidence 1 222233332221 12333331 1467899999999999999999 8
Q ss_pred cCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCC
Q 000781 213 IGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1288)
Q Consensus 213 ~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~ 251 (1288)
...|.++++.+- ++.+++++.|+++++||+...
T Consensus 100 ~~~V~sL~~sP~------~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 100 KKRVNSLSVSPK------DDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred CceEEEEEecCC------CCeEEecccCCeEEeeEecCC
Confidence 899999999853 579999999999999999964
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.59 E-value=6.2e-14 Score=160.75 Aligned_cols=232 Identities=14% Similarity=0.113 Sum_probs=155.6
Q ss_pred cccccccCccccccccCCCCCCCcceec--ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF--VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~--~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~ 555 (1288)
+.+++.++++++|++.+.+..-+.+..- .+..-.++.+.|..+..+ ++.|+.||+|.+|+.-. +
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAagc~DGSIQ~W~~~~----------~ 349 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAGCLDGSIQIWDKGS----------R 349 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhcccCCceeeeecCC----------c
Confidence 3445556666666666554322222221 233345677667666666 99999999999976421 1
Q ss_pred ccCCceeEEEEecCCc--CEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-ceEEEEecc--CcCEEEEEEC
Q 000781 556 KVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHH--VAPVRQIILS 630 (1288)
Q Consensus 556 d~~t~~~~~~l~gH~~--~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-~~l~~~~~H--~~~V~~l~~s 630 (1288)
.......+-..|.. .|+|+.| |+|| ++|+|-|.|.++++||++.. +++.++.+- .-+-+.++|+
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~F-----S~dg----~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISF-----SYDG----NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEe-----cccc----chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 11113445568988 8999999 5788 99999999999999999865 466665542 2355788999
Q ss_pred CCCCCCCCCCEEEEEEC------CCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 631 PPQTEHPWSDCFLSVGE------DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 631 p~~~~~~~g~~l~Sgs~------DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
|+ .++|++|.. -+++.+||..+...++.+.-....|..+.|+|.-+.|++|+.| |+++|+
T Consensus 419 Pd------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd--------G~~~vy 484 (641)
T KOG0772|consen 419 PD------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD--------GTAHVY 484 (641)
T ss_pred CC------ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC--------CceEEE
Confidence 99 788998853 5789999999999998887777889999999988888875543 899987
Q ss_pred ECC----CCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEE
Q 000781 705 DVK----TGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1288)
Q Consensus 705 Dl~----tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~ 762 (1288)
-=. .|..+...+.|...-+.... +. +.....+.++.|++..-|.
T Consensus 485 Ydp~~S~RGak~cv~k~~rkk~~~e~~----------~~----~~ii~phalpmfre~~~rt 532 (641)
T KOG0772|consen 485 YDPNESIRGAKLCVVKPPRKKHIDEDL----------SE----DVIINPHALPMFREEKSRT 532 (641)
T ss_pred ECccccccchhheeecCccccchhhhc----------Cc----ceEEccccchhccCchhhh
Confidence 322 25555555554433221100 11 3344556777787765443
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=5e-13 Score=146.27 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=66.4
Q ss_pred CCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccccccc
Q 000781 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1288)
Q Consensus 12 ~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~ 91 (1288)
..||..-|+.+.|+|....|+.++=||.++++|+.. .......-|.+|+++++|...
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~------~~l~~~~~~~~plL~c~F~d~----------------- 65 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA------NSLKLKFKHGAPLLDCAFADE----------------- 65 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccc------hhhhhheecCCceeeeeccCC-----------------
Confidence 358889999999999998888889999999999985 233445679999999987554
Q ss_pred CcccccccCCCCEEEEEeCCCeEEEEECCCCe
Q 000781 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGH 123 (1288)
Q Consensus 92 ~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~ 123 (1288)
...++|+.||+|+..|+.+|.
T Consensus 66 -----------~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 66 -----------STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred -----------ceEEEeccCceEEEEEecCCc
Confidence 679999999999999998765
No 115
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.58 E-value=2.3e-14 Score=153.03 Aligned_cols=187 Identities=19% Similarity=0.201 Sum_probs=150.4
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
..+++|.+.|.++.+..+... +++|+.|+++.+|..+... ......++||.+.|-.++|+|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~----lasgs~dktv~v~n~e~~r-------------~~~~~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTK----LASGSFDKTVSVWNLERDR-------------FRKELVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred HHhhhhhhcceEEEEcccCce----eeecccCCceEEEEecchh-------------hhhhhcccCCCcchhhheeCCCC
Confidence 345778899999888888887 9999999999997765321 11234567999999999998754
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCCCceEE-----------------------------------------------
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT----------------------------------------------- 615 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~----------------------------------------------- 615 (1288)
+ ..+++++.|++|++||++.+++..
T Consensus 77 ~--------d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 77 P--------DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred C--------cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence 3 789999999999999988665422
Q ss_pred -----------------------------------EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 616 -----------------------------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 616 -----------------------------------~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
.++.|.....|+.|+|+ |++|++|+.|..+.+||++..-
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------GRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC------CceEeeccccceeeccChhHhh
Confidence 33467777778888888 8999999999999999999999
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
|++.+..|.-+|+.+.|+.+|++|++|+. |..|-|=+.+||..+..++ |.++...+.+.|
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSE--------Dh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASE--------DHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCc--------cceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence 99999999999999999999999996544 4789999999998887765 333444444544
No 116
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=1.2e-13 Score=158.54 Aligned_cols=202 Identities=16% Similarity=0.143 Sum_probs=154.4
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
....+.++++| .++. .....+.+|..+|....|.+.... .+++|+.|+.+++|+.+ +.
T Consensus 86 GD~sG~V~vfD-~k~r---~iLR~~~ah~apv~~~~f~~~d~t---~l~s~sDd~v~k~~d~s---------------~a 143 (487)
T KOG0310|consen 86 GDESGHVKVFD-MKSR---VILRQLYAHQAPVHVTKFSPQDNT---MLVSGSDDKVVKYWDLS---------------TA 143 (487)
T ss_pred cCCcCcEEEec-cccH---HHHHHHhhccCceeEEEecccCCe---EEEecCCCceEEEEEcC---------------Cc
Confidence 34456677777 3331 245667889999998665544332 38888888888885543 44
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-ceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
.....+.||++.|.|.+|+| .++ ..++|||-||+||+||+++. ..+..+ .|..||..+.+.|. |
T Consensus 144 ~v~~~l~~htDYVR~g~~~~----~~~----hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lps------g 208 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISP----AND----HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPS------G 208 (487)
T ss_pred EEEEEecCCcceeEeecccc----CCC----eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCC------C
Confidence 45668999999999999986 233 79999999999999999977 566666 69999999999998 7
Q ss_pred CEEEEEECCCcEEEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC
Q 000781 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH 718 (1288)
..|++++. ..||+||+-+| +.+..+..|.-.|+|+++..++.-|++|+.| +.|+|||+.+.+.+..+. -
T Consensus 209 s~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------~~VKVfd~t~~Kvv~s~~-~ 278 (487)
T KOG0310|consen 209 SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------RHVKVFDTTNYKVVHSWK-Y 278 (487)
T ss_pred CEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc--------cceEEEEccceEEEEeee-c
Confidence 88888875 48999999965 4455555598899999999999999976654 899999988888777764 3
Q ss_pred CCceEEeeeec
Q 000781 719 ASHSMFDHFCK 729 (1288)
Q Consensus 719 ~~~vi~~~~~~ 729 (1288)
.++|+.+...+
T Consensus 279 ~~pvLsiavs~ 289 (487)
T KOG0310|consen 279 PGPVLSIAVSP 289 (487)
T ss_pred ccceeeEEecC
Confidence 45666655554
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=5.8e-14 Score=151.70 Aligned_cols=232 Identities=19% Similarity=0.215 Sum_probs=159.3
Q ss_pred ccCCCcEEEEEeee-cCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCcee---EEEEecCCcCEEEEEEeec
Q 000781 506 VHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS---RQYFLGHTGAVLCLAAHRM 581 (1288)
Q Consensus 506 ~~h~~~Vts~~~is-~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~---~~~l~gH~~~V~~L~~~p~ 581 (1288)
..|++.|+++.+-. ...+ +++|+.||.|.+++........++...- ..++ ...-.+|+..|..+.|-|-
T Consensus 40 r~HgGsvNsL~id~tegry----mlSGgadgsi~v~Dl~n~t~~e~s~li~---k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRY----MLSGGADGSIAVFDLQNATDYEASGLIA---KHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ccCCCccceeeeccccceE----EeecCCCccEEEEEeccccchhhcccee---heeeeccccCCccceeeeeeeEEeee
Confidence 56999999865533 3344 9999999999998776443222222111 1112 1223589999999999872
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC-EEEEEECCCcEEEEECCCce
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~-~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
|- ..+.|+|-|.++++||.++-+....|+ ..+.|.+-+|+|-.. .+ ++++|-.|-.|++-|+..|.
T Consensus 113 ----Dt----GmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 113 ----DT----GMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ----cC----ceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh----cceEEEEecCCCcEEEEeccCCc
Confidence 22 589999999999999999988777775 467888889998732 34 46666778899999999999
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEEEeCCCCce-EEeeeecCccceeeec
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHS-MFDHFCKGISMNSISG 738 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~l~GH~~~v-i~~~~~~~~~~~~~sg 738 (1288)
+-+++.||.+.|.+|.|+|...+++ ++++.||.||+||++.. -+.+++.-|...- -.+....... .-+.|
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vL-------atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~-gkvng 251 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVL-------ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY-GKVNG 251 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEE-------EecCCCceEEEEEeecccceeEEeecccCccCcccccccccc-ceeee
Confidence 9999999999999999999999887 34445699999999875 6777777776211 0000000000 00111
Q ss_pred ceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 739 SVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 739 si~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
. . -++..-.+..+..|.++|.|+..+.
T Consensus 252 l--a-~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 252 L--A-WTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred e--e-ecccchhhhhccCccceEEeecccC
Confidence 1 0 1122234455666999999986543
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=160.55 Aligned_cols=242 Identities=16% Similarity=0.140 Sum_probs=182.4
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecc-------------
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL------------- 544 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~------------- 544 (1288)
+.+.+.++-+++|+.... .+..+|..|.+.|..+.+.. . .+++.+.|.+|+.|..+.
T Consensus 82 ~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~-~-----~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~ 151 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ-T-----SFFTVGDDKTVKQWKIDGPPLHTILGKSVYL 151 (433)
T ss_pred hhccccCceEEEEehhhh----hhhheeecccCceeeEEecc-c-----ceEEecCCcceeeeeccCCcceeeecccccc
Confidence 556678888999998765 46788999999999976655 2 268888999999987321
Q ss_pred ----------cccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceE
Q 000781 545 ----------FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI 614 (1288)
Q Consensus 545 ----------~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l 614 (1288)
+.+.......||..-..+++.+.=-...|.++.|+|... .+|++|+.|++|.++|++++.++
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------sILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------SILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcc--------hheeeeccCCceEEEecccCCcc
Confidence 111112233677766667888876678899999976322 68999999999999999999988
Q ss_pred EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCc
Q 000781 615 TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR 693 (1288)
Q Consensus 615 ~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sg 693 (1288)
++... +-.-+.++|+|+ .-.|++++.|..+..+|++.. +++....+|.+.|.+|.|+|.|+-+++|+.|
T Consensus 224 ~KVi~-~mRTN~IswnPe------afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD--- 293 (433)
T KOG0268|consen 224 KKVIL-TMRTNTICWNPE------AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD--- 293 (433)
T ss_pred ceeee-eccccceecCcc------ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc---
Confidence 77642 335678999997 788999999999999999975 5788899999999999999999999976654
Q ss_pred ccCCCCeEEEEECCCCcEEEEEeC-CCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCccc
Q 000781 694 TSDAVDVLFIWDVKTGARERVLRG-TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1288)
Q Consensus 694 ssD~DgtV~VWDl~tg~l~~~l~G-H~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~~ 769 (1288)
.+|||+..+.|..-.++.. --.+|+++.|+. .+.-+++|+ .|+.+|.|..+..+
T Consensus 294 -----ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGS----------------dd~nvRlWka~Ase 348 (433)
T KOG0268|consen 294 -----KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGS----------------DDGNVRLWKAKASE 348 (433)
T ss_pred -----ceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecC----------------CCcceeeeecchhh
Confidence 8999999998876555432 234566665542 222344454 39999999765333
No 119
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=1.4e-13 Score=166.98 Aligned_cols=205 Identities=12% Similarity=0.143 Sum_probs=157.6
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
.+...|.||.+.|..+.+..++ | |++++.|.++++|. +...+|+.+|. |...|||++|+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-f----LLSSSMDKTVRLWh---------------~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-F----LLSSSMDKTVRLWH---------------PGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cchhhhhccchhheecccccCC-e----eEeccccccEEeec---------------CCCcceeeEEe-cCCeeEEEEec
Confidence 5677889999999985444443 3 89999999999944 45566888885 99999999999
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~ 659 (1288)
|. ++++++|||-|+.||||++...+...-...| .-|++++|.|+ |+..+.|+.+|.+++|+.+..
T Consensus 419 Pv--------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 419 PV--------DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cc--------CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC------CceEEEEEeccEEEEEEccCC
Confidence 73 3489999999999999999877655444444 89999999999 899999999999999999988
Q ss_pred eeEEEecC---------CCCCcEEEEEcCCCC--EEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCce--EEee
Q 000781 660 RVERMFPG---------HPNYPAKVVWDCPRG--YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS--MFDH 726 (1288)
Q Consensus 660 ~~l~~l~g---------H~~~V~~V~~sp~~~--~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~v--i~~~ 726 (1288)
+.+..+.- |. .|+.+.|.|... .|+| +. |..|||+|+++-.++..|+|+...- +.+.
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT-------Sn--DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT-------SN--DSRIRIYDGRDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe-------cC--CCceEEEeccchhhhhhhcccccCCcceeee
Confidence 87655431 22 799999998654 5552 33 4899999999999999999876332 2222
Q ss_pred eecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCc
Q 000781 727 FCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1288)
Q Consensus 727 ~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~ 767 (1288)
|.. +|. +++...+|..|-+|+...
T Consensus 554 fs~-------Dgk----------~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 554 FSS-------DGK----------HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred Ecc-------CCC----------EEEEeecCceEEEEeCCC
Confidence 221 332 344555799999998643
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.57 E-value=3.3e-14 Score=154.58 Aligned_cols=185 Identities=17% Similarity=0.264 Sum_probs=143.7
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCC
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Spd 586 (1288)
...+.|.++.|.+... ..+++|+.||+|++|..+..+. . . + +....|.++|.|++| +.|
T Consensus 25 pP~DsIS~l~FSP~~~---~~~~A~SWD~tVR~wevq~~g~---------~-~--~-ka~~~~~~PvL~v~W-----sdd 83 (347)
T KOG0647|consen 25 PPEDSISALAFSPQAD---NLLAAGSWDGTVRIWEVQNSGQ---------L-V--P-KAQQSHDGPVLDVCW-----SDD 83 (347)
T ss_pred CcccchheeEeccccC---ceEEecccCCceEEEEEecCCc---------c-c--c-hhhhccCCCeEEEEE-----ccC
Confidence 3557888877776222 2367999999999988764321 1 1 1 345579999999999 467
Q ss_pred CCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-------
Q 000781 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL------- 659 (1288)
Q Consensus 587 G~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~------- 659 (1288)
| ..+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+... -+||++||.|+++|.||.|..
T Consensus 84 g----skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~----~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 84 G----SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN----YQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred C----ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC----cceeEecccccceeecccCCCCeeeeee
Confidence 7 999999999999999999995 567778999999999987622 359999999999999998854
Q ss_pred -----------------------------------------------eeE------------------------------
Q 000781 660 -----------------------------------------------RVE------------------------------ 662 (1288)
Q Consensus 660 -----------------------------------------------~~l------------------------------ 662 (1288)
+|+
T Consensus 155 LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 155 LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 111
Q ss_pred -EEecCCCC---------CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 663 -RMFPGHPN---------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 663 -~~l~gH~~---------~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
.+|+.|.. .|++|+|+|....|+|.+. ||+..+||-...+.+++...|..++.++.|..
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs--------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS--------DGTFSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecC--------CceEEEecchhhhhhhccCcCCCccceeEecC
Confidence 12233431 3678999999999997543 49999999998899999999999998876653
No 121
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.57 E-value=2.1e-14 Score=155.88 Aligned_cols=178 Identities=16% Similarity=0.248 Sum_probs=145.7
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
.+.++-.|.+.|+++.|-+.... |++|+.|++|++.+|.... . .+..++| .....|.++.||
T Consensus 164 vIRTlYDH~devn~l~FHPre~I----LiS~srD~tvKlFDfsK~s----------a--KrA~K~~-qd~~~vrsiSfH- 225 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETI----LISGSRDNTVKLFDFSKTS----------A--KRAFKVF-QDTEPVRSISFH- 225 (430)
T ss_pred eEeehhhccCcccceeecchhhe----EEeccCCCeEEEEecccHH----------H--HHHHHHh-hccceeeeEeec-
Confidence 56777889999999766666665 9999999999996654211 0 0112222 235789999997
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEE---eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~---~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
|.| .+|+.|.+-.++++||+++-+|...- .+|++.|+++.+++. ++..+++|.||.|+|||--
T Consensus 226 ----PsG----efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t------~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 226 ----PSG----EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST------GSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred ----CCC----ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC------ccEEEEeccCCcEEeeccc
Confidence 477 99999999999999999998876543 469999999999999 8999999999999999999
Q ss_pred CceeEEEec-CCC-CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC
Q 000781 658 TLRVERMFP-GHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1288)
Q Consensus 658 t~~~l~~l~-gH~-~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH 718 (1288)
.++|+.++. .|. ..|.+..|..+++|+++ ++.|.+|++|++.||..+.++.|-
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--------SG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--------SGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEee--------cCCcceeeeeeecCCceEEEEecC
Confidence 999998884 564 46889999999999994 444689999999999999999875
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.2e-14 Score=148.55 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=130.9
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
....+..|...|+++.+.+..-- -.|+||+.||.|.|..++..+. |+ ..+....|+-.|+++.|.|
T Consensus 94 k~~e~~~h~~SVNsV~wapheyg--l~LacasSDG~vsvl~~~~~g~-------w~-----t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYG--LLLACASSDGKVSVLTYDSSGG-------WT-----TSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred hhhhhhhhcccceeecccccccc--eEEEEeeCCCcEEEEEEcCCCC-------cc-----chhhhhccccccceeeecC
Confidence 34556789999999544433210 1299999999999988874421 32 2345568999999999988
Q ss_pred cccCCC------CCccCcEEEEEECCCcEEEEeCCCCc--eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEE
Q 000781 581 MVGTAK------GWSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1288)
Q Consensus 581 ~~~Spd------G~~~~~~L~SGs~D~tI~vWDl~tg~--~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~ 652 (1288)
... |+ ....-+.|+||+.|..|+||+...++ .-++|.+|++.|+.++|.|..... ..+++|+|.||+|.
T Consensus 160 a~~-~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~--~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 160 ASA-PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP--KSTIASCSQDGTVI 236 (299)
T ss_pred cCC-CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC--ceeeEEecCCCcEE
Confidence 532 21 00112579999999999999998764 445699999999999999973211 35999999999999
Q ss_pred EEECCCc-ee--EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 653 LASLETL-RV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 653 lWdl~t~-~~--l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
||..+.. +. ...+......++.+.|++.|++|++++. |+.|++|.-.
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G--------dNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG--------DNKVTLWKEN 286 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEeccccEEEEecC--------CcEEEEEEeC
Confidence 9987632 11 1222333467899999999999997443 4899999653
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2e-13 Score=148.95 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=158.5
Q ss_pred EEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcccccc
Q 000781 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1288)
Q Consensus 19 VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1288)
-+|+.|++-|.+||.|+.||.|.|||+.+ ..+-.+|.+|..||++| +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-----~~iar~lsaH~~pi~sl---~W------------------------ 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-----FRIARMLSAHVRPITSL---CW------------------------ 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-----cchhhhhhccccceeEE---Ee------------------------
Confidence 68999999999999999999999999997 45667899999999999 45
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccc----cccccccc--
Q 000781 99 SLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSD----HHSFESVE-- 172 (1288)
Q Consensus 99 s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~----~~~~~~~~-- 172 (1288)
|+||..|+|+|.|..+++||+.+|.|..++.++ .|.--+.+++..+..++.|.-...-.+.+ .|+.=++.
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEcc----CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 889999999999999999999999999998875 45444555555555565554311110000 01111111
Q ss_pred c---c-----cccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEE
Q 000781 173 G---D-----LVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQL 244 (1288)
Q Consensus 173 g---~-----~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ik 244 (1288)
| - .+.-.+++.+.+..++.+.++|+.|++++..+--. ....|..+-|..- +..++.-+.|++||
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~~------g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIVSRK------GRFLIINTSDRVIR 221 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEEecc------CcEEEEecCCceEE
Confidence 1 0 12233467788899999999999999988776641 2345777777643 56899999999999
Q ss_pred EeeccCCccccccCCcc--cccCcccceeEeecCcccCceEEEEecCCCEEEEEe
Q 000781 245 VPISKESHLDREEGNGL--CKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVL 297 (1288)
Q Consensus 245 vW~l~~~~~~~~~~~~l--~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~ 297 (1288)
++++.+-.-.+..+++- ++- ...+..+.+ ..+.|+.+|.++.-.+
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~---qDvVNk~~W-----k~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKL---QDVVNKLQW-----KKCCFSGDGEYVCAGS 268 (405)
T ss_pred EEehhhhcccCccCCcChhHHH---HHHHhhhhh-----hheeecCCccEEEecc
Confidence 99887532223333222 221 113344445 5678888998876555
No 124
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.57 E-value=3.7e-14 Score=175.71 Aligned_cols=190 Identities=23% Similarity=0.300 Sum_probs=153.3
Q ss_pred ccCC-CcEEEEEeeecCcccCCEEEEEE--cCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 506 VHKE-KIVSSSMVISESFYAPYAIVYGF--FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 506 ~~h~-~~Vts~~~is~~~~~p~~lv~Gs--~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
.+|. ..|.++.+.++... +++|+ .||.++||..++.... ...++..-.+.+.++..|.+.|+|+.|
T Consensus 9 v~H~~~~IfSIdv~pdg~~----~aTgGq~~d~~~~iW~~~~vl~~---~~~~~~~l~k~l~~m~~h~~sv~CVR~---- 77 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVK----FATGGQVLDGGIVIWSQDPVLDE---KEEKNENLPKHLCTMDDHDGSVNCVRF---- 77 (942)
T ss_pred cccCCeeEEEEEecCCcee----EecCCccccccceeeccccccch---hhhhhcccchhheeeccccCceeEEEE----
Confidence 3343 45666555555444 88998 7899999886654321 111122123466778899999999999
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCC------------------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEE
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGS------------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~t------------------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~S 644 (1288)
+||| ++||+||+|+.|.||+... .++...+.+|.+.|..+.|+|+ +.+++|
T Consensus 78 -S~dG----~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~------~~~lvS 146 (942)
T KOG0973|consen 78 -SPDG----SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD------DSLLVS 146 (942)
T ss_pred -CCCC----CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC------ccEEEE
Confidence 6899 9999999999999999772 1367789999999999999999 899999
Q ss_pred EECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEE
Q 000781 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1288)
Q Consensus 645 gs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~ 724 (1288)
++.|++|.|||.++.+++..+.+|.+.|..+.|+|-|+||++- +| |++|+||++.+....+.++++-.++..
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASq-------sd-Drtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQ-------SD-DRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred ecccceEEEEccccceeeeeeecccccccceEECCccCeeeee-------cC-CceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999999999999999999999999953 33 699999998888899999988776544
Q ss_pred e
Q 000781 725 D 725 (1288)
Q Consensus 725 ~ 725 (1288)
.
T Consensus 219 ~ 219 (942)
T KOG0973|consen 219 T 219 (942)
T ss_pred c
Confidence 3
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=1.4e-14 Score=160.30 Aligned_cols=203 Identities=15% Similarity=0.229 Sum_probs=155.8
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
.+.+|.+.|.| ++-....+..+++|+.||.|++|+ +.+..+..+|..|.+.|..|.+..
T Consensus 61 ~L~gHrdGV~~---lakhp~~ls~~aSGs~DG~VkiWn---------------lsqR~~~~~f~AH~G~V~Gi~v~~--- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSC---LAKHPNKLSTVASGSCDGEVKIWN---------------LSQRECIRTFKAHEGLVRGICVTQ--- 119 (433)
T ss_pred hccccccccch---hhcCcchhhhhhccccCceEEEEe---------------hhhhhhhheeecccCceeeEEecc---
Confidence 34789999999 333333334589999999999954 556678999999999999999942
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCC--------------------------------------CceEEEEeccCcCEE
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGS--------------------------------------GNLITVMHHHVAPVR 625 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~t--------------------------------------g~~l~~~~~H~~~V~ 625 (1288)
..++|+|+|++|+.|-+.. ..++..|....+.|.
T Consensus 120 --------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 120 --------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred --------cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCcee
Confidence 5789999999998886331 123445555567788
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 626 ~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
++.|+|.+ ...|++++.|++|-|||++++.+++.+.-- -.-+.|+|+|+.-.+++ +++|..+|.+|
T Consensus 192 svkfNpvE-----TsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~--------a~ED~nlY~~D 257 (433)
T KOG0268|consen 192 SVKFNPVE-----TSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVA--------ANEDHNLYTYD 257 (433)
T ss_pred EEecCCCc-----chheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceee--------ccccccceehh
Confidence 99999985 468999999999999999999888665422 35678999995544443 45568999999
Q ss_pred CCC-CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 706 VKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 706 l~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
++. .+.+....+|.+.|+.+.|++ +| +..+++++ |.+||++..+
T Consensus 258 mR~l~~p~~v~~dhvsAV~dVdfsp-------tG-----~Efvsgsy-----DksIRIf~~~ 302 (433)
T KOG0268|consen 258 MRNLSRPLNVHKDHVSAVMDVDFSP-------TG-----QEFVSGSY-----DKSIRIFPVN 302 (433)
T ss_pred hhhhcccchhhcccceeEEEeccCC-------Cc-----chhccccc-----cceEEEeecC
Confidence 987 567889999999999998875 33 35566667 9999999764
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7e-13 Score=145.83 Aligned_cols=223 Identities=16% Similarity=0.218 Sum_probs=158.1
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEc--CCcEEEEEecccccCCCCCCccccC
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF--SGEIEVIQFDLFERHNSPGASLKVN 558 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~--DG~I~i~~~d~~~~~~~~~~~~d~~ 558 (1288)
++.+..+++++..+... ..+...+.-.|....|.....- ++.++. |.+|+... +.
T Consensus 32 ss~dDsl~LYd~~~g~~----~~ti~skkyG~~~~~Fth~~~~----~i~sStk~d~tIryLs---------------l~ 88 (311)
T KOG1446|consen 32 SSEDDSLRLYDSLSGKQ----VKTINSKKYGVDLACFTHHSNT----VIHSSTKEDDTIRYLS---------------LH 88 (311)
T ss_pred ecCCCeEEEEEcCCCce----eeEeecccccccEEEEecCCce----EEEccCCCCCceEEEE---------------ee
Confidence 34455667777666533 2333333334444444444333 666666 67777743 56
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
+.+.++.|.||...|+.|..+| -+ ..++|+|.|++|++||++..++...+..-..+| ++|.|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP-----~~----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~------ 151 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSP-----KD----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPE------ 151 (311)
T ss_pred cCceEEEcCCCCceEEEEEecC-----CC----CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCC------
Confidence 7889999999999999999964 44 789999999999999999999888876555554 678998
Q ss_pred CCEEEEEECCCcEEEEECCCc--eeEEEecC---CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 639 SDCFLSVGEDFSVALASLETL--RVERMFPG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~--~~l~~l~g---H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
|-++|.+.....|++||+|.. .+..+|.- -....+.+.|+|+|++|+.... .+.+++-|.-+|+...
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--------~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--------ASFIYLLDAFDGTVKS 223 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--------CCcEEEEEccCCcEee
Confidence 889999988889999999964 44445432 2457789999999999986322 3799999999999999
Q ss_pred EEeCCCCce---EEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 714 VLRGTASHS---MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 714 ~l~GH~~~v---i~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
++.+|...- ..+.|.|+ | .++.++. .|+++.+|+++..
T Consensus 224 tfs~~~~~~~~~~~a~ftPd-------s-----~Fvl~gs-----~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPD-------S-----KFVLSGS-----DDGTIHVWNLETG 264 (311)
T ss_pred eEeeccCCCCcceeEEECCC-------C-----cEEEEec-----CCCcEEEEEcCCC
Confidence 999887544 22222221 1 2333333 4899999987543
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.54 E-value=1.2e-12 Score=142.71 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=175.0
Q ss_pred CCCCCceEEEEEEeCCC-CeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccc
Q 000781 12 GTPPSHRVTATSALTQP-PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1288)
Q Consensus 12 ~~~p~h~VTala~spdg-~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~ 90 (1288)
+.||...|++|+|||.. .+++.||=||+|++|++.. +....| .....|.+||.++++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~--~g~~~~-ka~~~~~~PvL~v~W------------------- 80 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQN--SGQLVP-KAQQSHDGPVLDVCW------------------- 80 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEec--CCcccc-hhhhccCCCeEEEEE-------------------
Confidence 46899999999999954 5666889999999999985 223334 345579999999955
Q ss_pred cCcccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccc
Q 000781 91 SSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFES 170 (1288)
Q Consensus 91 ~~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~ 170 (1288)
+.|++.+++|+.|+.+++||+.+|+.... ..| ..|...+.+-....+.||.-.
T Consensus 81 --------sddgskVf~g~~Dk~~k~wDL~S~Q~~~v-~~H---d~pvkt~~wv~~~~~~cl~TG--------------- 133 (347)
T KOG0647|consen 81 --------SDDGSKVFSGGCDKQAKLWDLASGQVSQV-AAH---DAPVKTCHWVPGMNYQCLVTG--------------- 133 (347)
T ss_pred --------ccCCceEEeeccCCceEEEEccCCCeeee-eec---ccceeEEEEecCCCcceeEec---------------
Confidence 77899999999999999999999976543 333 333332222222224444333
Q ss_pred cccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccC
Q 000781 171 VEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1288)
Q Consensus 171 ~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~ 250 (1288)
.-+.+|..||+..-..+.++.- .+.+.++.+.++ +++.++.++.|.+++|++
T Consensus 134 ----------------SWDKTlKfWD~R~~~pv~t~~L----PeRvYa~Dv~~p--------m~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 134 ----------------SWDKTLKFWDTRSSNPVATLQL----PERVYAADVLYP--------MAVVATAERHIAVYNLEN 185 (347)
T ss_pred ----------------ccccceeecccCCCCeeeeeec----cceeeehhccCc--------eeEEEecCCcEEEEEcCC
Confidence 2678899999998877777664 345788877765 788888899999999987
Q ss_pred CccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCC
Q 000781 251 SHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGS 328 (1288)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~ 328 (1288)
... +.+.+. ..+.-.+++|++..|++..++.+.++. |.-+ ........|+ .-|.....
T Consensus 186 ~~t-------------e~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i-d~~~~~~nFt----FkCHR~~~ 245 (347)
T KOG0647|consen 186 PPT-------------EFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI-DDPNPKDNFT----FKCHRSTN 245 (347)
T ss_pred Ccc-------------hhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEec-CCCCccCcee----EEEeccCC
Confidence 421 111111 112224589999999998899888877 3333 3322234552 33443221
Q ss_pred --CC-cceE-EEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccc
Q 000781 329 --TN-SYVI-GAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFE 389 (1288)
Q Consensus 329 --~~-~~~~-gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~ 389 (1288)
.. -|.+ +..|. . ..+.|++.+.||+.-.|+-.....+.+.+.+.+
T Consensus 246 ~~~~~VYaVNsi~Fh-P---------------~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFH-P---------------VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred CCCCceEEecceEee-c---------------ccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 11 1222 23333 1 134788999999999998876555555554444
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.6e-10 Score=137.42 Aligned_cols=443 Identities=14% Similarity=0.071 Sum_probs=245.9
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeEEE-eeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccccc
Q 000781 99 SLDNGALISACTDGVLCVWSRSSGHCRRR-RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVS 177 (1288)
Q Consensus 99 s~d~~~LvS~s~DG~l~vWdl~~G~c~~~-~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~~ 177 (1288)
+.+.+.|+.+=+||.|-+|++..+-|... +..+ .-+.|-.+.-. ...+|+..+
T Consensus 34 s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~----~drsIE~L~W~-e~~RLFS~g--------------------- 87 (691)
T KOG2048|consen 34 SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP----EDRSIESLAWA-EGGRLFSSG--------------------- 87 (691)
T ss_pred eccCCceeeeccCCcEEEEccCCCceeeEEEecC----CCCceeeEEEc-cCCeEEeec---------------------
Confidence 33456699999999999999987655443 3332 11222222211 112233333
Q ss_pred ccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCcccccc
Q 000781 178 EDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREE 257 (1288)
Q Consensus 178 ~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~ 257 (1288)
-.+.|.-||+.+++..+.+.. ..++|.+||+... ++.++.++.||++...+.....
T Consensus 88 ----------~sg~i~EwDl~~lk~~~~~d~---~gg~IWsiai~p~------~~~l~IgcddGvl~~~s~~p~~----- 143 (691)
T KOG2048|consen 88 ----------LSGSITEWDLHTLKQKYNIDS---NGGAIWSIAINPE------NTILAIGCDDGVLYDFSIGPDK----- 143 (691)
T ss_pred ----------CCceEEEEecccCceeEEecC---CCcceeEEEeCCc------cceEEeecCCceEEEEecCCce-----
Confidence 568999999999999999998 7888999999854 5688888899977776665531
Q ss_pred CCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEE
Q 000781 258 GNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIG 335 (1288)
Q Consensus 258 ~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~g 335 (1288)
-.|+. .+....+.+-++++.+++.+++..+.|+. +||...+.++. + ..--+-.........+.+
T Consensus 144 --I~~~r--------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~--~--~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 144 --ITYKR--------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH--I--ITMQLDRLSKREPTIVWS 209 (691)
T ss_pred --EEEEe--------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE--E--eeecccccccCCceEEEE
Confidence 11111 22333345567888899988888888885 88884443222 1 000011111223456788
Q ss_pred EEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEe
Q 000781 336 AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRM 415 (1288)
Q Consensus 336 g~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v 415 (1288)
..|+ ..+ .++-++..|+++.|+-..+. .+........+++++.-....+++++.
T Consensus 210 v~~L-rd~----------------tI~sgDS~G~V~FWd~~~gT---------LiqS~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 210 VLFL-RDS----------------TIASGDSAGTVTFWDSIFGT---------LIQSHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred EEEe-ecC----------------cEEEecCCceEEEEcccCcc---------hhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence 9999 666 78999999999999877531 111111222333333333333333333
Q ss_pred eeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccceeecCccccCCCCCcccCccccccccCccccccccCC
Q 000781 416 ETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDS 495 (1288)
Q Consensus 416 ~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~ 495 (1288)
. .+.+ +.-|..... .+.|-....
T Consensus 264 G-----vd~~------ii~~~~~~~----------------------------------------------~~~wv~~~~ 286 (691)
T KOG2048|consen 264 G-----VDPK------IIQYSLTTN----------------------------------------------KSEWVINSR 286 (691)
T ss_pred c-----CCCc------eEEEEecCC----------------------------------------------ccceeeecc
Confidence 2 1111 111110000 000222111
Q ss_pred CCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEeccccc-----CCC--------------------
Q 000781 496 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER-----HNS-------------------- 550 (1288)
Q Consensus 496 ~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~-----~~~-------------------- 550 (1288)
...|...|.+++++.+ . +++|+.|+++.+...-.... ...
T Consensus 287 ---------r~~h~hdvrs~av~~~--~----l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 287 ---------RDLHAHDVRSMAVIEN--A----LISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred ---------ccCCcccceeeeeecc--e----EEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEec
Confidence 1335555555544444 2 56666666655543211000 000
Q ss_pred --CCCccccCCc---------eeE-EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEE--
Q 000781 551 --PGASLKVNSH---------VSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-- 616 (1288)
Q Consensus 551 --~~~~~d~~t~---------~~~-~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~-- 616 (1288)
+...|.+-+. ... ..+++ ...|.|-+. |||| ++++-+.. ...+++.+.....+..
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~-~~nIs~~ai-----SPdg----~~Ia~st~-~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKE-KENISCAAI-----SPDG----NLIAISTV-SRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCC-ccceeeecc-----CCCC----CEEEEeec-cceEEEEeccCcceeEEE
Confidence 0111111000 111 11222 345666666 6788 88877654 3567777764322221
Q ss_pred ---EeccCcCEEEEEECCCCCCCCCCCEEEEEE-CCCcEEEEECCCcee--EEEec--CCCCCcEEEEEcCCCCEEEEEe
Q 000781 617 ---MHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRV--ERMFP--GHPNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 617 ---~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs-~DgsV~lWdl~t~~~--l~~l~--gH~~~V~~V~~sp~~~~L~tg~ 688 (1288)
...-.-....+.|+-+ ++.++-++ .+..+.+.++.+... +..+. +-...|..+..+|+|+||++.+
T Consensus 421 v~~~~~~~~~a~~i~ftid------~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 421 VDDVPLALLDASAISFTID------KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS 494 (691)
T ss_pred eccchhhhccceeeEEEec------CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence 2223345677778777 56566666 778888888876533 22222 2345789999999999999744
Q ss_pred cCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeee
Q 000781 689 RDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 689 ~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
. +|.|++|++++++.-.....-...++...+.
T Consensus 495 t--------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~ 526 (691)
T KOG2048|consen 495 T--------RGQIFVYNLETLESHLLKVRLNIDVTAAAFS 526 (691)
T ss_pred c--------cceEEEEEcccceeecchhccCcceeeeecc
Confidence 3 3899999999877543332333455555554
No 129
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.53 E-value=4.4e-13 Score=143.70 Aligned_cols=204 Identities=11% Similarity=0.061 Sum_probs=167.2
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
+.+.+.++...+|-..+. +...++.+|.+.|.|+..--+... +++|+.|.++++ ||+
T Consensus 25 lFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~s~~----liTGSAD~t~kL---------------WDv 81 (327)
T KOG0643|consen 25 LFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWDSKH----LITGSADQTAKL---------------WDV 81 (327)
T ss_pred EEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCCcce----eeeccccceeEE---------------EEc
Confidence 345677888889988765 566788999999999777666666 999999999999 448
Q ss_pred CCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC-----CCcEEEEeCC-------CCceEEEEeccCcCEE
Q 000781 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-----DCSIRIWDLG-------SGNLITVMHHHVAPVR 625 (1288)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~-----D~tI~vWDl~-------tg~~l~~~~~H~~~V~ 625 (1288)
++|+.+..++- ..+|..+.|+ .+| ++++...+ -+.|.++|++ ..++..++..+.+.++
T Consensus 82 ~tGk~la~~k~-~~~Vk~~~F~-----~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 82 ETGKQLATWKT-NSPVKRVDFS-----FGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred CCCcEEEEeec-CCeeEEEeec-----cCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 89999888863 6789999994 577 55554443 3579999998 4567888989999999
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 626 ~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
...|.|- +++|++|..||.|..||++++ +.+....-|...|+.++++++..+++++|.| .+-++|
T Consensus 152 ~a~Wg~l------~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D--------ttakl~ 217 (327)
T KOG0643|consen 152 SALWGPL------GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD--------TTAKLV 217 (327)
T ss_pred eeeeccc------CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC--------ccceee
Confidence 9999998 899999999999999999997 4567778899999999999999999987765 799999
Q ss_pred ECCCCcEEEEEeCCCCceEEeeeec
Q 000781 705 DVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 705 Dl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
|.++-++++++.-.. ++.++...+
T Consensus 218 D~~tl~v~Kty~te~-PvN~aaisP 241 (327)
T KOG0643|consen 218 DVRTLEVLKTYTTER-PVNTAAISP 241 (327)
T ss_pred eccceeeEEEeeecc-cccceeccc
Confidence 999999999987554 554444444
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.2e-12 Score=141.02 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=109.1
Q ss_pred EeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEE
Q 000781 516 MVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV 595 (1288)
Q Consensus 516 ~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~ 595 (1288)
++.++.+| ++.++..-++++|..-.... ...+.-+....|+||..+|+.++|+ +++ ..++
T Consensus 235 avSP~GRF----ia~~gFTpDVkVwE~~f~kd-------G~fqev~rvf~LkGH~saV~~~aFs-----n~S----~r~v 294 (420)
T KOG2096|consen 235 AVSPDGRF----IAVSGFTPDVKVWEPIFTKD-------GTFQEVKRVFSLKGHQSAVLAAAFS-----NSS----TRAV 294 (420)
T ss_pred eeCCCCcE----EEEecCCCCceEEEEEeccC-------cchhhhhhhheeccchhheeeeeeC-----CCc----ceeE
Confidence 44556666 77777788899976322111 1123333567789999999999994 565 8999
Q ss_pred EEECCCcEEEEeCCC-------CceEEEE----eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE
Q 000781 596 SGSMDCSIRIWDLGS-------GNLITVM----HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1288)
Q Consensus 596 SGs~D~tI~vWDl~t-------g~~l~~~----~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~ 664 (1288)
|.|.||++|+||++- .+.++.+ ..-.+.-..+.++|+ |+.|+ .+...+++++..++++..-.
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~------g~~lA-~s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS------GDSLA-VSFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCC------CcEEE-eecCCceEEEEcccCccchh
Confidence 999999999999862 2233333 111222338899998 66554 45556899999999887766
Q ss_pred e-cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 665 F-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 665 l-~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
+ ..|...|.+|.|+++|+|+++ ++| ..++|..
T Consensus 368 ~e~~h~~~Is~is~~~~g~~~at-------cGd--r~vrv~~ 400 (420)
T KOG2096|consen 368 LEDIHSTTISSISYSSDGKYIAT-------CGD--RYVRVIR 400 (420)
T ss_pred HHHhhcCceeeEEecCCCcEEee-------ecc--eeeeeec
Confidence 6 468889999999999999995 444 6787764
No 131
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.52 E-value=1.3e-13 Score=157.15 Aligned_cols=166 Identities=20% Similarity=0.236 Sum_probs=141.5
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCC
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Spd 586 (1288)
+|...+.++++.++..+ +++|..|..|.||+ +.+.+.++.+.||.+.|.+++|- +
T Consensus 200 ~h~keil~~avS~Dgky----latgg~d~~v~Iw~---------------~~t~ehv~~~~ghr~~V~~L~fr------~ 254 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKY----LATGGRDRHVQIWD---------------CDTLEHVKVFKGHRGAVSSLAFR------K 254 (479)
T ss_pred cccceeEEEEEcCCCcE----EEecCCCceEEEec---------------Ccccchhhcccccccceeeeeee------c
Confidence 78899999999999999 99999999999944 55777889999999999999993 2
Q ss_pred CCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec
Q 000781 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 587 G~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
....++++|.|++|++|++.....+.++.+|.+.|.++..... +.++..|+.|+++++|++. -+....|.
T Consensus 255 ---gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~-eesqlifr 324 (479)
T KOG0299|consen 255 ---GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIP-EESQLIFR 324 (479)
T ss_pred ---CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc------cceEEeccccceeEEEecc-ccceeeee
Confidence 2368999999999999999999999999999999999998776 5677777799999999994 44556789
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 667 gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
+|.+.+-|++|-.+..+ ++|+ | ||.|.+|++-+.+++.+..
T Consensus 325 g~~~sidcv~~In~~Hf-vsGS-------d-nG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 325 GGEGSIDCVAFINDEHF-VSGS-------D-NGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred CCCCCeeeEEEecccce-eecc-------C-CceEEEeeecccCceeEee
Confidence 99999999999876655 4433 2 5999999999888887654
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.51 E-value=2.5e-13 Score=159.38 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=115.8
Q ss_pred ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEE--EecCCcCEEEEEEe
Q 000781 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLGHTGAVLCLAAH 579 (1288)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~--l~gH~~~V~~L~~~ 579 (1288)
...+..|...|..+..++.... |++++.|.+++.|+ +++.+.... +.||++.|.+++|+
T Consensus 93 lk~~~aH~nAifDl~wapge~~----lVsasGDsT~r~Wd---------------vk~s~l~G~~~~~GH~~SvkS~cf~ 153 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESL----LVSASGDSTIRPWD---------------VKTSRLVGGRLNLGHTGSVKSECFM 153 (720)
T ss_pred hcccccccceeEeeccCCCcee----EEEccCCceeeeee---------------eccceeecceeecccccccchhhhc
Confidence 3556789999999766664444 99999999999944 555555555 88999999999997
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCc---------------------------eEEEEeccCcCEEE---EEE
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------LITVMHHHVAPVRQ---IIL 629 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~---------------------------~l~~~~~H~~~V~~---l~~ 629 (1288)
|. | ...|++|+.||.|.|||++... .+++...|...|.+ +.+
T Consensus 154 ~~----n----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 154 PT----N----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred cC----C----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 63 2 3799999999999999986221 12233445444444 444
Q ss_pred CCCCCCCCCCCEEEEEEC-CCcEEEEECCCceeEE--------EecCC---CCCcEEEEEcCCCCEEEEEecCCCcccCC
Q 000781 630 SPPQTEHPWSDCFLSVGE-DFSVALASLETLRVER--------MFPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1288)
Q Consensus 630 sp~~~~~~~g~~l~Sgs~-DgsV~lWdl~t~~~l~--------~l~gH---~~~V~~V~~sp~~~~L~tg~~D~sgssD~ 697 (1288)
..| ...|+|++. |+.|+|||+++..+.. .+..| ...+.++..+..|.+|+.-|.|
T Consensus 226 fkD------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD------- 292 (720)
T KOG0321|consen 226 FKD------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD------- 292 (720)
T ss_pred Eec------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC-------
Confidence 445 578998887 9999999999764332 23333 2245677777788888876655
Q ss_pred CCeEEEEECC
Q 000781 698 VDVLFIWDVK 707 (1288)
Q Consensus 698 DgtV~VWDl~ 707 (1288)
++|+.||+.
T Consensus 293 -~sIy~ynm~ 301 (720)
T KOG0321|consen 293 -NSIYFYNMR 301 (720)
T ss_pred -CcEEEEecc
Confidence 566666554
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.50 E-value=3.6e-13 Score=153.57 Aligned_cols=215 Identities=17% Similarity=0.197 Sum_probs=163.5
Q ss_pred ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc----C-CceeEEEE-ecCCcCEEE
Q 000781 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV----N-SHVSRQYF-LGHTGAVLC 575 (1288)
Q Consensus 502 ~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~----~-t~~~~~~l-~gH~~~V~~ 575 (1288)
......|...|+|+++.++..+ .++++.+|+|.=|....-... ...+.- + .+.+...- ++|.+.+.+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~----~fsask~g~i~kw~v~tgk~~---~~i~~~~ev~k~~~~~~k~~r~~h~keil~ 207 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR----VFSASKDGTILKWDVLTGKKD---RYIIERDEVLKSHGNPLKESRKGHVKEILT 207 (479)
T ss_pred ceeeccccCcceEEEeeccccc----eeecCCCcceeeeehhcCccc---ccccccchhhhhccCCCCcccccccceeEE
Confidence 3455789999999998888888 999999997766443211100 000100 0 01111111 489999999
Q ss_pred EEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 576 L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
++. |+|| ++|++|+.|..|.|||..+.+.++.|.+|.+.|.+++|-.. .+.+.++|.|++|++|+
T Consensus 208 ~av-----S~Dg----kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------t~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 208 LAV-----SSDG----KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------TSELYSASADRSVKVWS 272 (479)
T ss_pred EEE-----cCCC----cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC------ccceeeeecCCceEEEe
Confidence 999 5788 99999999999999999999999999999999999999765 56899999999999999
Q ss_pred CCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCcccee
Q 000781 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNS 735 (1288)
Q Consensus 656 l~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~ 735 (1288)
++....+.++.||++.|..|.-..-+..+.+|+. |+++++|++. -+..-++.||.+.+-++.|.++. ..
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr--------DrT~rlwKi~-eesqlifrg~~~sidcv~~In~~--Hf 341 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR--------DRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE--HF 341 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccc--------cceeEEEecc-ccceeeeeCCCCCeeeEEEeccc--ce
Confidence 9999999999999999999988877777666544 4899999994 34445778888777666554321 23
Q ss_pred eecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 736 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 736 ~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
++|+ .||.|-.|++
T Consensus 342 vsGS----------------dnG~IaLWs~ 355 (479)
T KOG0299|consen 342 VSGS----------------DNGSIALWSL 355 (479)
T ss_pred eecc----------------CCceEEEeee
Confidence 3333 4999999975
No 134
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.49 E-value=8.8e-13 Score=147.65 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=140.3
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
.+.+|++.|..+ ....|+-..+++|++|.+|.||..-..+.. ..-.+++..|.||..+|.-++|||..
T Consensus 76 ~v~GHt~~vLDi---~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------~~ltepvv~L~gH~rrVg~V~wHPtA- 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDI---DWCPFNDCVIASGSEDTKVMVWQIPENGLT--------RDLTEPVVELYGHQRRVGLVQWHPTA- 143 (472)
T ss_pred CccCcccccccc---ccCccCCceeecCCCCceEEEEECCCcccc--------cCcccceEEEeecceeEEEEeecccc-
Confidence 457899999884 334555556999999999999775322110 11225788999999999999999843
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~ 663 (1288)
.+.|+|+|.|.+|.+||+.+|+.+-++. |.+-|.++.|+.+ |.++++.+.|+.|||||.++++.+.
T Consensus 144 -------~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 144 -------PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred -------hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcEee
Confidence 2799999999999999999999888887 9999999999999 8999999999999999999999999
Q ss_pred EecCCCC-CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 664 MFPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 664 ~l~gH~~-~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
.-.+|.+ ....+.|-.++..+.||.. ..+ +..+-+||.+.
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfs---r~s--eRq~aLwdp~n 250 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFS---RMS--ERQIALWDPNN 250 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccc---ccc--ccceeccCccc
Confidence 9888975 3467888888885555543 234 47999998754
No 135
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.49 E-value=9.8e-14 Score=155.15 Aligned_cols=135 Identities=19% Similarity=0.295 Sum_probs=120.0
Q ss_pred EEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-------ceEEEEeccCcCEEEEEECCCCCCCC
Q 000781 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 565 ~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-------~~l~~~~~H~~~V~~l~~sp~~~~~~ 637 (1288)
.+.||+++|..++|+|. +++.|+|||+|.+|+||++..+ +++..+.+|...|.-+.|+|.-
T Consensus 76 ~v~GHt~~vLDi~w~Pf--------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA---- 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF--------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA---- 143 (472)
T ss_pred CccCccccccccccCcc--------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----
Confidence 46799999999999873 2389999999999999998654 3567889999999999999973
Q ss_pred CCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
.+.++|++.|.+|.+||+.+++.+.++. |.+-|+++.|+-+|.+|+++|.| ..|||||.++|+.+..-.+
T Consensus 144 -~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD--------KkvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 144 -PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD--------KKVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred -hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc--------ceeEEEcCCCCcEeeeccc
Confidence 5789999999999999999999998887 99999999999999999987775 8999999999999988888
Q ss_pred CCCc
Q 000781 718 TASH 721 (1288)
Q Consensus 718 H~~~ 721 (1288)
|.+.
T Consensus 214 heG~ 217 (472)
T KOG0303|consen 214 HEGA 217 (472)
T ss_pred ccCC
Confidence 8643
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.7e-12 Score=139.11 Aligned_cols=208 Identities=13% Similarity=0.174 Sum_probs=150.3
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
.+|.+-|.++.|-...+. +++++.|+++.||++.. +-.+..+....+.|.+.|..+.|.+ |
T Consensus 10 s~h~DlihdVs~D~~GRR----mAtCSsDq~vkI~d~~~-----------~s~~W~~Ts~Wrah~~Si~rV~WAh----P 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR----MATCSSDQTVKIWDSTS-----------DSGTWSCTSSWRAHDGSIWRVVWAH----P 70 (361)
T ss_pred cCCcceeeeeeecccCce----eeeccCCCcEEEEeccC-----------CCCceEEeeeEEecCCcEEEEEecC----c
Confidence 567888888666544444 99999999999977531 1233446778899999999999953 2
Q ss_pred CCCccCcEEEEEECCCcEEEEeCC--C----C---ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEEC
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLG--S----G---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~--t----g---~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1288)
. +.+.++++|.|+++.||.=. . + ....++....+.|+.+.|.|... |-.+++++.||++|||+.
T Consensus 71 E---fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl----GLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 71 E---FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL----GLKLAAASADGILRIYEA 143 (361)
T ss_pred c---ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc----ceEEEEeccCcEEEEEec
Confidence 1 34999999999999999752 1 1 23456777788999999999843 778999999999999975
Q ss_pred CCc-------------------------------------------------------------------eeEEEecCCC
Q 000781 657 ETL-------------------------------------------------------------------RVERMFPGHP 669 (1288)
Q Consensus 657 ~t~-------------------------------------------------------------------~~l~~l~gH~ 669 (1288)
-+. ..+.++.+|.
T Consensus 144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 321 1223456888
Q ss_pred CCcEEEEEcCCC----CEEEEEecCCCcccCCCCeEEEEECCCC--------------------cEEEEEeCCCCceEEe
Q 000781 670 NYPAKVVWDCPR----GYIACLCRDHSRTSDAVDVLFIWDVKTG--------------------ARERVLRGTASHSMFD 725 (1288)
Q Consensus 670 ~~V~~V~~sp~~----~~L~tg~~D~sgssD~DgtV~VWDl~tg--------------------~l~~~l~GH~~~vi~~ 725 (1288)
.+|+.|+|.|.- ..|+++|.| | |+||.++.. +.+..+.+|..+|..+
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kD--------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKD--------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecC--------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence 999999999953 467776544 7 999998731 1345577899999877
Q ss_pred eeecCccceeeecceeeCcccccCCceeeccCCcEEEEeC
Q 000781 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1288)
Q Consensus 726 ~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~ 765 (1288)
.|.- +|++ +.|. ..||++|.|..
T Consensus 295 ~wNm-------tGti-----LsSt-----GdDG~VRLWka 317 (361)
T KOG2445|consen 295 RWNM-------TGTI-----LSST-----GDDGCVRLWKA 317 (361)
T ss_pred EEee-------eeeE-----Eeec-----CCCceeeehhh
Confidence 6652 4442 2222 34999999963
No 137
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.4e-12 Score=136.36 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=135.4
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
.+..+++|.+.|+.++|.. .+ |++| .||.|+-|.|............|+.+... ++=.----.|+++...|
T Consensus 54 ~iv~eqahdgpiy~~~f~d--~~----Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~--~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFHD--DF----LLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPM--QVDAVEVPEINAMWLDP 124 (325)
T ss_pred ceeeccccCCCeeeeeeeh--hh----eeec-cCceEEEeeehhhhhhccchhhhhhcCcc--ccCcccCCccceeEecc
Confidence 4456689999999977762 22 4554 57999999998665544444455444321 11011124578887754
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
.. +-++.++.|+.++-||+++|+..+.|++|++.|.++.-... ...++||+.||++|+||.++++
T Consensus 125 -----~e----nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~------~~qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 125 -----SE----NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA------NGQILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred -----CC----CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc------CcceeecCCCccEEEEeccccc
Confidence 22 44666668999999999999999999999999999987443 4579999999999999999999
Q ss_pred eEEEecCCC----------CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE--EeCCCCceEEe
Q 000781 661 VERMFPGHP----------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV--LRGTASHSMFD 725 (1288)
Q Consensus 661 ~l~~l~gH~----------~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~--l~GH~~~vi~~ 725 (1288)
++.++.... ..|-+++ -+..+|+||+. ..+.+|++++.++..+ +.+|...+++.
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG---------p~lslwhLrsse~t~vfpipa~v~~v~F~ 255 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG---------PKLSLWHLRSSESTCVFPIPARVHLVDFV 255 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC---------CceeEEeccCCCceEEEecccceeEeeee
Confidence 998874321 1233444 45779998653 4899999998877665 45777666644
No 138
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.2e-12 Score=148.19 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=80.1
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++|+.|+.+...+.|. +.++.++++-|..+|+.++||+. -.+++||+.|+++.|+.
T Consensus 622 li~gs~d~k~~WfDldl--------------sskPyk~lr~H~~avr~Va~H~r---------yPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDL--------------SSKPYKTLRLHEKAVRSVAFHKR---------YPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEecCCCeeEEEEccc--------------CcchhHHhhhhhhhhhhhhhccc---------cceeeeecCCCcEEEEe
Confidence 99999999998866553 23478889999999999999862 26999999999999985
Q ss_pred CC------CC---ceEEEEeccCcC----EEEEEECCCCCCCCCCCEEEEEECCCcEEEE
Q 000781 608 LG------SG---NLITVMHHHVAP----VRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1288)
Q Consensus 608 l~------tg---~~l~~~~~H~~~----V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lW 654 (1288)
-. .. -++..+.+|... |..+.|+|. ...+.|++.|++|++|
T Consensus 679 g~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 679 GMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR------QPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeehhhhcCCceEeeeeccCceeecccceEeecccCC------CceEEecCCCceEEee
Confidence 32 11 246788899765 888899998 6789999999999998
No 139
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.47 E-value=1.1e-11 Score=144.57 Aligned_cols=120 Identities=18% Similarity=0.315 Sum_probs=105.9
Q ss_pred CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-------ceEEEEeccCcCEEEEEECCCCCCCCCCCEE
Q 000781 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1288)
Q Consensus 570 ~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-------~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l 642 (1288)
...|+.+.|.|- | .+.|+.+++|+.|++|.+..+ .+-..++.|...|+++.|+|-- .+.+
T Consensus 627 gt~vtDl~WdPF----D----~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advL 693 (1012)
T KOG1445|consen 627 GTLVTDLHWDPF----D----DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVL 693 (1012)
T ss_pred CceeeecccCCC----C----hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----hhHh
Confidence 457999999762 2 388999999999999998754 3456789999999999999962 5789
Q ss_pred EEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 643 ~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
++++.|.+|++||+++++....|.||.+.|..++|+|+|+.+++.|.| |+|+||+.++++
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD--------g~~rVy~Prs~e 753 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD--------GTLRVYEPRSRE 753 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC--------ceEEEeCCCCCC
Confidence 999999999999999999999999999999999999999999998875 999999998764
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.45 E-value=1.6e-10 Score=131.28 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=95.4
Q ss_pred cCEEEEEEeecccCCCCCccCcEE-EEEECCCcEEEEeCCCCceEEEEeccCc-------CEEEEEECCCCCCCCCCCE-
Q 000781 571 GAVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLITVMHHHVA-------PVRQIILSPPQTEHPWSDC- 641 (1288)
Q Consensus 571 ~~V~~L~~~p~~~SpdG~~~~~~L-~SGs~D~tI~vWDl~tg~~l~~~~~H~~-------~V~~l~~sp~~~~~~~g~~- 641 (1288)
....++.| +|+| +++ +++..|+.|++||+.+++.+..+..+.. ....++|+|+ ++.
T Consensus 157 ~~~~~~~~-----s~dg----~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~~ 221 (300)
T TIGR03866 157 QRPRFAEF-----TADG----KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD------GKTA 221 (300)
T ss_pred CCccEEEE-----CCCC----CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC------CCEE
Confidence 34567888 4677 666 5666799999999999988777654321 2346888998 665
Q ss_pred EEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
+++.+.++.+.+||+++++.+..+. +...+.+++|+|++++|++++. .+++|+|||++++++++.+....
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~-------~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG-------VSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-------CCCeEEEEECCCCcEEEEEEccc
Confidence 4445667789999999988876654 3347899999999999986432 25899999999999998887543
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4.5e-12 Score=138.51 Aligned_cols=177 Identities=19% Similarity=0.312 Sum_probs=134.7
Q ss_pred EEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccC
Q 000781 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591 (1288)
Q Consensus 512 Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~ 591 (1288)
-.|+.|.....+ ++.|+.||.+.||+++.. ..-+.|.+|..+|+|++| |+||
T Consensus 26 a~~~~Fs~~G~~----lAvGc~nG~vvI~D~~T~---------------~iar~lsaH~~pi~sl~W-----S~dg---- 77 (405)
T KOG1273|consen 26 AECCQFSRWGDY----LAVGCANGRVVIYDFDTF---------------RIARMLSAHVRPITSLCW-----SRDG---- 77 (405)
T ss_pred cceEEeccCcce----eeeeccCCcEEEEEcccc---------------chhhhhhccccceeEEEe-----cCCC----
Confidence 456566666666 999999999999887733 255788999999999999 5788
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCC--------------------------------------
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQ-------------------------------------- 633 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~-------------------------------------- 633 (1288)
+.|+|+|.|..|++||+..|.+++.+. ...+|+.+.|.|..
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 999999999999999999999888764 34556555555541
Q ss_pred ---CCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCC-CC--------------------------------------
Q 000781 634 ---TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP-NY-------------------------------------- 671 (1288)
Q Consensus 634 ---~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~-~~-------------------------------------- 671 (1288)
...+.|+++.+|-.-|.+.++|..+.+|+..++-.. ..
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 123678999999999999999998876665543211 11
Q ss_pred ---------------cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEE
Q 000781 672 ---------------PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1288)
Q Consensus 672 ---------------V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~ 724 (1288)
-.+++|+.+|.|++.|+ .+-..+|||.-.+|.+++.++|..+....
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s-------~~aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS-------ARAHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEecc-------ccceeEEEEecCCcceeeeecCCchhhee
Confidence 23567788888877432 23478999999999999999998866543
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.45 E-value=9e-12 Score=142.49 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=159.0
Q ss_pred cccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCce
Q 000781 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1288)
Q Consensus 482 ~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~ 561 (1288)
...+.+++||+... .....+.+|...|+++.|-....+ |++++..|+|.+.. ++++.
T Consensus 98 G~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~Dey----iAsvs~gGdiiih~---------------~~t~~ 154 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEY----IASVSDGGDIIIHG---------------TKTKQ 154 (673)
T ss_pred CcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcce----eEEeccCCcEEEEe---------------cccCc
Confidence 34567899998742 123445899999999999888888 99999999999944 33443
Q ss_pred eEEEEecCCc-CEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEE-eccCcCEEEEEECCCCCCCCCC
Q 000781 562 SRQYFLGHTG-AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 562 ~~~~l~gH~~-~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~-~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
....|.--.+ .|.-|.|+| .. ..+|.++|.+|.|.+||+....+++.+ ..|..|...|+|+|.+ .
T Consensus 155 ~tt~f~~~sgqsvRll~ys~-----sk---r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----e 221 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSP-----SK---RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----E 221 (673)
T ss_pred cccceecCCCCeEEEeeccc-----cc---ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc-----c
Confidence 3344432223 455778865 22 368999999999999999887776654 5799999999999984 5
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeCC
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGT 718 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~GH 718 (1288)
.+|++.+.|+.|.+||.+..+....+... .+...|+|.++|.+|+.|... |.|+.||++. .+++.++..|
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLTYS-HPLSTVAFSECGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ceEEEecccceEEEeecccccccceeeec-CCcceeeecCCceEEEeecCC--------ceEEEEecccCCCCceEeeec
Confidence 69999999999999999988777666533 378899999999999975433 8999999985 6789999999
Q ss_pred CCceEEeeeec
Q 000781 719 ASHSMFDHFCK 729 (1288)
Q Consensus 719 ~~~vi~~~~~~ 729 (1288)
.+.|+++.|-+
T Consensus 293 ~~sVt~vafq~ 303 (673)
T KOG4378|consen 293 DASVTRVAFQP 303 (673)
T ss_pred ccceeEEEeee
Confidence 99998887754
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.44 E-value=4.9e-10 Score=127.36 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=69.9
Q ss_pred EEEEEeecccCCCCCccCcE-EEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEE-ECCCcE
Q 000781 574 LCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSV 651 (1288)
Q Consensus 574 ~~L~~~p~~~SpdG~~~~~~-L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sg-s~DgsV 651 (1288)
..+.| +||| +. +++.+.++.+.+||+.+++.+..+. +...+.+++|+|+ ++.++++ +.+++|
T Consensus 210 ~~i~~-----s~dg----~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~i 273 (300)
T TIGR03866 210 VGIKL-----TKDG----KTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD------EKYLLTTNGVSNDV 273 (300)
T ss_pred cceEE-----CCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC------CCEEEEEcCCCCeE
Confidence 35677 4677 55 4555667789999999988776553 4567999999999 7888776 569999
Q ss_pred EEEECCCceeEEEecCCCCCcEEEEEcC
Q 000781 652 ALASLETLRVERMFPGHPNYPAKVVWDC 679 (1288)
Q Consensus 652 ~lWdl~t~~~l~~l~gH~~~V~~V~~sp 679 (1288)
++||+++++++..++.. ..++.++++|
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999888754 5678888875
No 144
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.5e-10 Score=141.46 Aligned_cols=524 Identities=11% Similarity=0.082 Sum_probs=274.7
Q ss_pred EEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcccccccC
Q 000781 21 ATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSL 100 (1288)
Q Consensus 21 ala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 100 (1288)
.-.||+|+++++- ..+..|.|+...+ +..+..|.+|+++++.+.+..- .+
T Consensus 21 ~avfSnD~k~l~~-~~~~~V~VyS~~T-----g~~i~~l~~~~a~l~s~~~~~~------------------------~~ 70 (792)
T KOG1963|consen 21 PAVFSNDAKFLFL-CTGNFVKVYSTAT-----GECITSLEDHTAPLTSVIVLPS------------------------SE 70 (792)
T ss_pred ccccccCCcEEEE-eeCCEEEEEecch-----HhhhhhcccccCccceeeecCC------------------------Cc
Confidence 3468999988875 4677999999997 4556689999999999966332 33
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccC-------Ccccc---cccccc
Q 000781 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDT-------NQLSD---HHSFES 170 (1288)
Q Consensus 101 d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~-------~~~~~---~~~~~~ 170 (1288)
.-.++++.+.||+|++||..+|.++....... ..+..+.....-.....+.-+..+. .+++. ...+..
T Consensus 71 ~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~--~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t 148 (792)
T KOG1963|consen 71 NANYLIVCSLDGTIRVWDWSDGELLKTFDNNL--PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLAT 148 (792)
T ss_pred cceEEEEEecCccEEEecCCCcEEEEEEecCC--ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeee
Confidence 44788999999999999999999988765531 1111111111000001111111000 00000 000000
Q ss_pred ccc--------c-----cccccccCCCCCCCCceEEEEecCCceEEEEEec---cccccCCceEEEEEeccCCCCcceEE
Q 000781 171 VEG--------D-----LVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFH---GNLSIGPWKFMDVVSLGEDMGKHYGL 234 (1288)
Q Consensus 171 ~~g--------~-----~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~---~~~~~~~is~l~v~~~~~~~~~~~~l 234 (1288)
..+ . ++.........-...+.+.+|+..... ..... ..-|..++++.++... +.++
T Consensus 149 ~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn------~~~~ 220 (792)
T KOG1963|consen 149 FDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPN------ERYL 220 (792)
T ss_pred ccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccc------cceE
Confidence 000 0 000001111111234445555544332 11111 1113344677888754 5689
Q ss_pred EEecCCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce-EEeecCCCcccc
Q 000781 235 MVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIG 313 (1288)
Q Consensus 235 ls~s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~-i~~~l~~~~~~g 313 (1288)
+++-.||.|.+|.=-+. +. +..+..++++|...|..++++++|..++.++.++. +.|-+++++ .
T Consensus 221 Aa~d~dGrI~vw~d~~~-----------~~--~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--k 285 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGS-----------SD--DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--K 285 (792)
T ss_pred EEeccCCcEEEEecccc-----------cc--ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--c
Confidence 99988899999964431 00 44466788999999999999999999999988877 444435443 2
Q ss_pred eeeeeecceeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCcccccCCcccc-Cc
Q 000781 314 EICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEI-PA 392 (1288)
Q Consensus 314 ~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~~~l~~i-~~ 392 (1288)
++ |=+. +..+.+-.+.++++ .+.+..+|+.+.+-.++.....-+...+..- +.
T Consensus 286 qf------LPRL----gs~I~~i~vS~ds~----------------~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 286 QF------LPRL----GSPILHIVVSPDSD----------------LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred cc------cccc----CCeeEEEEEcCCCC----------------eEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 22 1111 12233333433344 6788888999988887653222111111000 00
Q ss_pred cc-CCCCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCC-----------CCCCc-ceeEEee---cCc
Q 000781 393 VS-YPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKH-----------SGPGK-QCRMVGE---GFS 456 (1288)
Q Consensus 393 ~~-~~~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~-----------~~~~~-~~~~l~~---G~~ 456 (1288)
.+ .+++-...+...+... +..++.+ +.++.+|++.... ...+. ..+.... -+.
T Consensus 340 ~k~~~~~l~t~~~idpr~~------~~vln~~-----~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTN------SLVLNGH-----PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred ccccccccceeEEEcCCCC------ceeecCC-----CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 00 0011111111111000 0001111 1124444432221 00111 1111110 112
Q ss_pred cceeecCccccCCCCCcccCccccccccCccccccccCCCCCCCcceec-ccCCCcEEEEEeeecCcccCCEEEEEEcCC
Q 000781 457 FVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSG 535 (1288)
Q Consensus 457 ~G~W~~~~~~~~~~~g~~v~kl~~s~~~s~~~lWd~~~~~~~~~~~~~~-~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG 535 (1288)
+|.|-..--.. +.+.........++.|..........+.... .+|+..+.+..+.....- .+.++++.||
T Consensus 409 ~gs~maT~E~~-------~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg 479 (792)
T KOG1963|consen 409 FGSWMATLEAR-------IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDG 479 (792)
T ss_pred cceEEEEeeee-------ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCC
Confidence 24443321000 0011111223456778776554443343333 678877776555544332 2689999999
Q ss_pred cEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCC-CceE
Q 000781 536 EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLI 614 (1288)
Q Consensus 536 ~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t-g~~l 614 (1288)
.+++|.+............|-+. .+..| |..+++.++| +.|| -+++.|.|.+|.+||..+ ..+.
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~---~i~sy--~k~~i~a~~f-----s~dG-----slla~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCK---AIGSY--HKTPITALCF-----SQDG-----SLLAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred eEEEEEEecccccCcCccceEEe---eeecc--ccCcccchhh-----cCCC-----cEEEEecCCEEEEecCCChhhhh
Confidence 99999885444433344445222 33443 8899999999 4576 577778899999999988 4444
Q ss_pred EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE
Q 000781 615 TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1288)
Q Consensus 615 ~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~ 664 (1288)
..+..-..++..+.+..... ....+....-..+.+|++.+......
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 545 CTEGSRNWPIAELLFTAQTQ----NDGALVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred ccccccccchHhHhhhcccc----cccceeeccCceEehHhhhhhheecc
Confidence 44443444555444433211 23344555677899999988776653
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=2.8e-12 Score=145.84 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=133.6
Q ss_pred cccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccC
Q 000781 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1288)
Q Consensus 505 ~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~S 584 (1288)
-++|+..|-+ +..+...-+-|++|+.|.+|.+|+ +.++++..++.-|.+.|.++.|||.
T Consensus 239 ~~gHTdavl~---Ls~n~~~~nVLaSgsaD~TV~lWD---------------~~~g~p~~s~~~~~k~Vq~l~wh~~--- 297 (463)
T KOG0270|consen 239 ASGHTDAVLA---LSWNRNFRNVLASGSADKTVKLWD---------------VDTGKPKSSITHHGKKVQTLEWHPY--- 297 (463)
T ss_pred cccchHHHHH---HHhccccceeEEecCCCceEEEEE---------------cCCCCcceehhhcCCceeEEEecCC---
Confidence 3578888776 444554455699999999999944 6688899999999999999999863
Q ss_pred CCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEE
Q 000781 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVER 663 (1288)
Q Consensus 585 pdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~ 663 (1288)
.. ++|++||.|++|.+.|.+........-...+.|-.++|.|.. ...++++..||+|+-+|+|.. +++.
T Consensus 298 -~p----~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-----e~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 298 -EP----SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-----ENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred -Cc----eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----ceeEEEecCCceEEeeecCCCCCcee
Confidence 23 899999999999999998543333322346789999999984 468889999999999999975 9999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 664 ~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
++..|.+.|.++.+++.-..+++ +++.|++|++|++..
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~-------t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLS-------TASTDKVVKLWKFDV 405 (463)
T ss_pred EEEeccCCcceEEecCCCCccee-------eccccceEEEEeecC
Confidence 99999999999999987766553 233359999999864
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.7e-12 Score=139.23 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=122.1
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-----eEEEEeccCcCEEEEEECCCCCC--
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-----LITVMHHHVAPVRQIILSPPQTE-- 635 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-----~l~~~~~H~~~V~~l~~sp~~~~-- 635 (1288)
...|+||.+.|+|++| +.|| +.|+|++.|++|++||++.-. +++. ..--+--+.+.|.||-..
T Consensus 79 ~~~LKgH~~~vt~~~F-----sSdG----K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF-----SSDG----KKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhhhccCCceeeeEE-----cCCC----ceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEE
Confidence 4578899999999999 5788 999999999999999987421 1100 000111223333333000
Q ss_pred -----------------------------------------------CCCCCEEEEEECCCcEEEEECCCceeEEEecCC
Q 000781 636 -----------------------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1288)
Q Consensus 636 -----------------------------------------------~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH 668 (1288)
.-.+.+|+|++.|..|.|||++ |+.+..+...
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 0125799999999999999999 9998888776
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC---CCCc-----EEEEEeCCCCceEEeeeecCccceeeecce
Q 000781 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV---KTGA-----RERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1288)
Q Consensus 669 ~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl---~tg~-----l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi 740 (1288)
...-+..+.+|+|+++++.+.. -.|+||++ +.|+ .+..+.||++.|....|++.
T Consensus 228 q~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~---------- 289 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS---------- 289 (420)
T ss_pred cccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC----------
Confidence 6667789999999999975532 46999986 3443 34678999999988877642
Q ss_pred eeCcccccCCceeeccCCcEEEEeCC
Q 000781 741 LNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 741 ~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
|..++++++||++|+|+..
T Consensus 290 -------S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 290 -------STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -------cceeEEEecCCcEEEeecc
Confidence 2345777889999999864
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.40 E-value=5.9e-12 Score=136.42 Aligned_cols=168 Identities=18% Similarity=0.255 Sum_probs=128.4
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
.+|.-.|....+.+-. .-++.+++.|.+++||+ ..+.+....|+ -.+.|..-+++|+..
T Consensus 98 ~~Hky~iss~~WyP~D---tGmFtssSFDhtlKVWD---------------tnTlQ~a~~F~-me~~VYshamSp~a~-- 156 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPID---TGMFTSSSFDHTLKVWD---------------TNTLQEAVDFK-MEGKVYSHAMSPMAM-- 156 (397)
T ss_pred ccceeeeeeeEEeeec---CceeecccccceEEEee---------------cccceeeEEee-cCceeehhhcChhhh--
Confidence 4677778775443322 12378899999999955 33444444443 357788888877532
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEE
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~ 664 (1288)
. ..++++|..|-.|++-|+.+|.+-+++.||.+.|.++.|+|.. .-.+++|+.||.||+||+|.. .|...
T Consensus 157 s----HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~-----e~vLatgsaDg~irlWDiRrasgcf~~ 227 (397)
T KOG4283|consen 157 S----HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS-----EWVLATGSADGAIRLWDIRRASGCFRV 227 (397)
T ss_pred c----ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc-----eeEEEecCCCceEEEEEeecccceeEE
Confidence 1 2689999999999999999999999999999999999999983 347899999999999999864 33333
Q ss_pred e--------------cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 665 F--------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 665 l--------------~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
+ ..|.+.|..++|..++.++++.+. |..+++|+...|+-
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt--------d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT--------DDRIRVWNMESGRN 280 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchhhhhccC--------ccceEEeecccCcc
Confidence 3 356678999999999999996443 48999999988764
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=6.3e-11 Score=144.71 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=130.9
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
-.+.+++|..+..+ ++.|+.|-.|++...+ +.....+++||.++|.+|.|+ |++
T Consensus 97 lp~r~~~v~g~g~~----iaagsdD~~vK~~~~~---------------D~s~~~~lrgh~apVl~l~~~-----p~~-- 150 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKM----IAAGSDDTAVKLLNLD---------------DSSQEKVLRGHDAPVLQLSYD-----PKG-- 150 (933)
T ss_pred ccceEEEEecCCcE----EEeecCceeEEEEecc---------------ccchheeecccCCceeeeeEc-----CCC--
Confidence 46677777777777 9999999999996643 344678999999999999995 577
Q ss_pred cCcEEEEEECCCcEEEEeCCCCceEEEEecc--------CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H--------~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
++||+.+.||+|++||+.++.+.+++.+- ...+..++|+|+ +..++..+.|++|++|+..+...
T Consensus 151 --~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 151 --NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK------GGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred --CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC------CCeEEeeccCCeEEEEccCCcee
Confidence 99999999999999999999877665431 456788999999 78899999999999999999988
Q ss_pred EEEecC--CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 662 ERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 662 l~~l~g--H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
...++. |...+..+.|+|.|.||+++.. ||.|-|||.+|
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~--------~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTL--------DGQILVWNVDT 263 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeecc--------CCcEEEEeccc
Confidence 877754 3334789999999999996544 49999999996
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=4e-12 Score=148.23 Aligned_cols=209 Identities=17% Similarity=0.165 Sum_probs=159.5
Q ss_pred cccccccCccccccccCCCCCC----CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCC
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~----~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~ 553 (1288)
+.+.+.++++++|.+.+..+.. ....+|.+|.++|.|+++..+... +++|+.||+|+.|...+....
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~----~ysgg~Dg~I~~w~~p~n~dp----- 379 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH----CYSGGIDGTIRCWNLPPNQDP----- 379 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE----EEeeccCceeeeeccCCCCCc-----
Confidence 4556778889999984433322 677899999999999999888888 999999999999764322211
Q ss_pred ccc-cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec-------------
Q 000781 554 SLK-VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH------------- 619 (1288)
Q Consensus 554 ~~d-~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~------------- 619 (1288)
.| .+......+|.||++.|+.+++|+ .. +.|+++|.|||++.|+...... .+|..
T Consensus 380 -~ds~dp~vl~~~l~Ghtdavw~l~~s~-----~~----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 380 -DDSYDPSVLSGTLLGHTDAVWLLALSS-----TK----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred -ccccCcchhccceeccccceeeeeecc-----cc----cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 11 111224567899999999999964 22 5799999999999999764332 11100
Q ss_pred -----c----------------------------------CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 620 -----H----------------------------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 620 -----H----------------------------------~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
| ...++.+.+.|. ....+++..|+.|+++|..+++
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~------~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT------ADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC------CCeeEecccCCceecccccccc
Confidence 0 012445555555 7889999999999999999999
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCC
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~ 720 (1288)
.++....|...++++++.|+|.+|++|+. |+.+++|.+...+++.....|..
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~--------d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSH--------DGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecC--------Cceeehhhccchheeeccccccc
Confidence 99999999999999999999999997554 48999999988888887777753
No 150
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=5.8e-12 Score=146.93 Aligned_cols=212 Identities=18% Similarity=0.181 Sum_probs=156.2
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
+...|.+.|.++.|-..... +++++.||.+.+|.++.... -....-+++.+|++|.++|.|+++
T Consensus 289 tl~s~~d~ir~l~~~~sep~----lit~sed~~lk~WnLqk~~~-------s~~~~~epi~tfraH~gPVl~v~v----- 352 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPV----LITASEDGTLKLWNLQKAKK-------SAEKDVEPILTFRAHEGPVLCVVV----- 352 (577)
T ss_pred eeecchhhhhhhhcCCCCCe----EEEeccccchhhhhhcccCC-------ccccceeeeEEEecccCceEEEEe-----
Confidence 45567777777666555555 99999999999977632111 112334589999999999999999
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCC----------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEE
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~t----------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~l 653 (1288)
++++ +.+.||+-||+|+.|++.. ......+.||++.|+.+++++. .+.|++++.||+|++
T Consensus 353 ~~n~----~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 353 PSNG----EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------KDRLLSCSSDGTVRL 422 (577)
T ss_pred cCCc----eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc------ccceeeecCCceEEe
Confidence 4577 9999999999999996541 1245678999999999999988 678999999999999
Q ss_pred EECCCcee--------------------------------------------EEEec-----C--CCCCcEEEEEcCCCC
Q 000781 654 ASLETLRV--------------------------------------------ERMFP-----G--HPNYPAKVVWDCPRG 682 (1288)
Q Consensus 654 Wdl~t~~~--------------------------------------------l~~l~-----g--H~~~V~~V~~sp~~~ 682 (1288)
|+.....+ +..+. + -...+..|.++|+..
T Consensus 423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 98754322 00110 0 012467889999999
Q ss_pred EEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEE
Q 000781 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1288)
Q Consensus 683 ~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~ 762 (1288)
+.+++.. |+.|+++|..+|..+.....|...+.++.+- ...+.. +....|++++.
T Consensus 503 ~~~~~he--------d~~Ir~~dn~~~~~l~s~~a~~~svtslai~-~ng~~l----------------~s~s~d~sv~l 557 (577)
T KOG0642|consen 503 ITFTAHE--------DRSIRFFDNKTGKILHSMVAHKDSVTSLAID-PNGPYL----------------MSGSHDGSVRL 557 (577)
T ss_pred eeEeccc--------CCceecccccccccchheeeccceecceeec-CCCceE----------------EeecCCceeeh
Confidence 8886443 5899999999999999999999887666332 222222 23335999999
Q ss_pred EeCC
Q 000781 763 SQIQ 766 (1288)
Q Consensus 763 w~~~ 766 (1288)
|.+.
T Consensus 558 ~kld 561 (577)
T KOG0642|consen 558 WKLD 561 (577)
T ss_pred hhcc
Confidence 9753
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.35 E-value=7.9e-11 Score=138.82 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
|+..+.|+.|+.|+.-.. .-.++..+.||...-.-+.-.- +||+ .+++||+.|....+|.
T Consensus 286 L~AsCtD~sIy~ynm~s~-------------s~sP~~~~sg~~~~sf~vks~l---Spd~----~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSL-------------SISPVAEFSGKLNSSFYVKSEL---SPDD----CSLLSGSSDEQAYIWV 345 (720)
T ss_pred EEEEecCCcEEEEecccc-------------CcCchhhccCcccceeeeeeec---CCCC----ceEeccCCCcceeeee
Confidence 777788999999654321 1124455555543322222111 5788 9999999999999999
Q ss_pred CCCCc-eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc--------------eeEEEecCCCCCc
Q 000781 608 LGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--------------RVERMFPGHPNYP 672 (1288)
Q Consensus 608 l~tg~-~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~--------------~~l~~l~gH~~~V 672 (1288)
+.+.+ ....+.+|.-.|++++|.|.. -.-++++++|..+++|++..+ .....|.+|.-.+
T Consensus 346 vs~~e~~~~~l~Ght~eVt~V~w~pS~-----~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~ 420 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTREVTTVRWLPSA-----TTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQV 420 (720)
T ss_pred ecCccCChhhhhCcceEEEEEeecccc-----CCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccc
Confidence 98765 456688999999999999873 235777899999999999654 2233455665555
Q ss_pred EEEEEcCCC
Q 000781 673 AKVVWDCPR 681 (1288)
Q Consensus 673 ~~V~~sp~~ 681 (1288)
..+.|+-.+
T Consensus 421 ~nv~ss~~~ 429 (720)
T KOG0321|consen 421 LNVNSSLRK 429 (720)
T ss_pred ccccccccc
Confidence 555554333
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.34 E-value=1.5e-11 Score=135.44 Aligned_cols=101 Identities=28% Similarity=0.397 Sum_probs=91.0
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.|+.-|-|+|.+ ..++++...+.||.+.|+.+.++|.. .++++|||.|.+||+||
T Consensus 108 la~~G~~GvIrVid---------------~~~~~~~~~~~ghG~sINeik~~p~~--------~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 108 LAAGGYLGVIRVID---------------VVSGQCSKNYRGHGGSINEIKFHPDR--------PQLVLSASKDHSVRLWN 164 (385)
T ss_pred EEeecceeEEEEEe---------------cchhhhccceeccCccchhhhcCCCC--------CcEEEEecCCceEEEEe
Confidence 77777889999955 45677889999999999999998742 28999999999999999
Q ss_pred CCCCceEEEE---eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 608 LGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 608 l~tg~~l~~~---~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
++++.|+..| .+|.+.|.++.|+++ |..|+|++.|+++++|++.
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~------gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLD------GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCC------CCeeeccCCcceEEEEecC
Confidence 9999999887 469999999999999 8999999999999999997
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=6.1e-11 Score=144.86 Aligned_cols=223 Identities=17% Similarity=0.192 Sum_probs=162.6
Q ss_pred cccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCce
Q 000781 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1288)
Q Consensus 482 ~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~ 561 (1288)
..++.++.|+..+... ...+...++..|.++..... . +++|+.+++|.++.++. ++
T Consensus 32 gsdg~ir~~~~~sd~e---~P~ti~~~g~~v~~ia~~s~--~----f~~~s~~~tv~~y~fps---------------~~ 87 (933)
T KOG1274|consen 32 GSDGDIRKWKTNSDEE---EPETIDISGELVSSIACYSN--H----FLTGSEQNTVLRYKFPS---------------GE 87 (933)
T ss_pred cCCCceEEeecCCccc---CCchhhccCceeEEEeeccc--c----eEEeeccceEEEeeCCC---------------CC
Confidence 3445566666554411 11112226677777444333 3 89999999999977652 22
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
....|..-+-++++++| +.+| .+++.||.|-.|++-++.......++.+|.++|.++.|+|. +++
T Consensus 88 ~~~iL~Rftlp~r~~~v-----~g~g----~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~------~~f 152 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAV-----SGSG----KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK------GNF 152 (933)
T ss_pred ccceeeeeeccceEEEE-----ecCC----cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC------CCE
Confidence 23334444678999999 4577 99999999999999999999999999999999999999999 899
Q ss_pred EEEEECCCcEEEEECCCceeEEEecCC--------CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 642 FLSVGEDFSVALASLETLRVERMFPGH--------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~~~l~~l~gH--------~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
+|+.+.||.|++||++++.+..++.+- ...+..++|+|++..+++-+. |++|++++..+++...
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--------d~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--------DNTVKVYSRKGWELQF 224 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--------CCeEEEEccCCceehe
Confidence 999999999999999999887776542 224568999999777776444 3899999999999988
Q ss_pred EEeCC--CCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 714 VLRGT--ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 714 ~l~GH--~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
.+.+. .+....+.|.+ +|.+..++.+ |+.|-+|+.+.+
T Consensus 225 ~Lr~~~~ss~~~~~~wsP------------nG~YiAAs~~-----~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSP------------NGKYIAASTL-----DGQILVWNVDTH 264 (933)
T ss_pred eecccccccceEEEEEcC------------CCcEEeeecc-----CCcEEEEecccc
Confidence 87653 33344344432 1334444455 999999998753
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=9.3e-11 Score=128.33 Aligned_cols=202 Identities=12% Similarity=0.185 Sum_probs=141.0
Q ss_pred cccccccCccccccccCC--CCCC---CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCC
Q 000781 478 SDLTFCQDTVPRSEHVDS--RQAG---DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~--~~~~---~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~ 552 (1288)
+...+.+.++.+|+-... +..+ ....++......|+.+.|.+... .-++++.+.||.++|+......
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl--GLklA~~~aDG~lRIYEA~dp~------ 147 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL--GLKLAAASADGILRIYEAPDPM------ 147 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc--ceEEEEeccCcEEEEEecCCcc------
Confidence 556788999999987422 2211 34455566677888755544322 1238999999999996532111
Q ss_pred CccccCCceeEEEEe-------cCCcCEEEEEEeecccCCCCCccCcEEEEEECC-----CcEEEEeCCCCc----eEEE
Q 000781 553 ASLKVNSHVSRQYFL-------GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLGSGN----LITV 616 (1288)
Q Consensus 553 ~~~d~~t~~~~~~l~-------gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D-----~tI~vWDl~tg~----~l~~ 616 (1288)
++......+.+. .|..+..|+.|+|. +-..++|+.|+.+ +.++||....+. .+..
T Consensus 148 ---nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s------r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 148 ---NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPS------RMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred ---ccccchhhhhhhhccCCcccccCcceEEeeccc------cccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 122222222332 46778899999763 2234788888877 478899775432 3456
Q ss_pred EeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc--------------------eeEEEecCCCCCcEEEE
Q 000781 617 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--------------------RVERMFPGHPNYPAKVV 676 (1288)
Q Consensus 617 ~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~--------------------~~l~~l~gH~~~V~~V~ 676 (1288)
+.+|+++|+.++|.|+- .+.-+.++.++.|| |+||.++.. +.+..+.+|.+.|+.+.
T Consensus 219 L~d~~dpI~di~wAPn~--Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNI--GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred cCCCCCcceeeeecccc--CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence 77999999999999972 33346899999999 999998741 34566789999999999
Q ss_pred EcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 677 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 677 ~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
|+-.|..|.+ ++| ||.||+|...
T Consensus 296 wNmtGtiLsS-------tGd-DG~VRLWkan 318 (361)
T KOG2445|consen 296 WNMTGTILSS-------TGD-DGCVRLWKAN 318 (361)
T ss_pred EeeeeeEEee-------cCC-Cceeeehhhh
Confidence 9999998883 455 7999999764
No 155
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=3.3e-11 Score=129.33 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=91.7
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
..|.+.|.++.|.+.... =+.|+.+..+..+.++-. ....+....+.-.+-.|..+.. .|
T Consensus 202 ash~qpvlsldyas~~~r----Gisgga~dkl~~~Sl~~s-----------~gslq~~~e~~lknpGv~gvrI-----Rp 261 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDR----GISGGADDKLVMYSLNHS-----------TGSLQIRKEITLKNPGVSGVRI-----RP 261 (323)
T ss_pred hhccCcceeeeechhhcC----CcCCCccccceeeeeccc-----------cCcccccceEEecCCCccceEE-----cc
Confidence 457778888777644443 567777777777665511 1111111222222455777777 46
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEEC
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl 656 (1288)
|+ +.++|++.|+.||||..+++.++..++.|.+.|++++|+|+ ...++++|.|+.|.+|++
T Consensus 262 D~----KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 DG----KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD------CELMAAASKDARISLWKL 322 (323)
T ss_pred CC----cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC------CchhhhccCCceEEeeec
Confidence 77 99999999999999999999999999999999999999999 789999999999999986
No 156
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.32 E-value=1.4e-11 Score=141.09 Aligned_cols=223 Identities=14% Similarity=0.119 Sum_probs=155.5
Q ss_pred ccCccccccccCCCCCCCc-ceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCce
Q 000781 483 CQDTVPRSEHVDSRQAGDG-RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~~~~~-~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~ 561 (1288)
..+-+++||+..+...... ..........|.++...++.+- |++|++-.++.||++. . .+..
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt----LivGGeastlsiWDLA--a-----------pTpr 500 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT----LIVGGEASTLSIWDLA--A-----------PTPR 500 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce----EEeccccceeeeeecc--C-----------CCcc
Confidence 3456788887654221100 0011223456666666666655 9999999999995543 1 2222
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
....+..-.-...+|+. +||. ++.+++..||.|.|||+.....++.|.+|++.+.||.++++ |..
T Consensus 501 ikaeltssapaCyALa~-----spDa----kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d------Gtk 565 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAI-----SPDA----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD------GTK 565 (705)
T ss_pred hhhhcCCcchhhhhhhc-----CCcc----ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC------Cce
Confidence 33334333345666777 5677 99999999999999999999999999999999999999999 889
Q ss_pred EEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCc
Q 000781 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~ 721 (1288)
|-+|+-|++||.||+++++.++... ..+.|.++-.+|++.+|++|=.+ +.|-|-.. ++...+.+.-|.+.
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen--------s~vevlh~-skp~kyqlhlheSc 635 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN--------SNVEVLHT-SKPEKYQLHLHESC 635 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc--------CcEEEEec-CCccceeecccccE
Confidence 9999999999999999998764322 24689999999999999986543 44444443 24445667788888
Q ss_pred eEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEEEe
Q 000781 722 SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1288)
Q Consensus 722 vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~ 764 (1288)
|..+.|.. .| .|.++... |+-+..|.
T Consensus 636 VLSlKFa~-------cG-----kwfvStGk-----DnlLnawr 661 (705)
T KOG0639|consen 636 VLSLKFAY-------CG-----KWFVSTGK-----DNLLNAWR 661 (705)
T ss_pred EEEEEecc-------cC-----ceeeecCc-----hhhhhhcc
Confidence 88887753 22 34443333 88788883
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=8e-12 Score=155.83 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=148.9
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
|+.|.+||.|.+|+-+.... -.....+.++.-|++.|..|.|+| .+ .++|+||+.||.|.|||
T Consensus 83 IaGG~edG~I~ly~p~~~~~---------~~~~~~la~~~~h~G~V~gLDfN~-----~q---~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIA---------NASEEVLATKSKHTGPVLGLDFNP-----FQ---GNLLASGADDGEILIWD 145 (1049)
T ss_pred eeccccCCceEEecchhhcc---------CcchHHHhhhcccCCceeeeeccc-----cC---CceeeccCCCCcEEEec
Confidence 67788899999966443211 011225667788999999999975 22 27999999999999999
Q ss_pred CCCCceEEEEe--ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC--CcEEEEEcCCCC-
Q 000781 608 LGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRG- 682 (1288)
Q Consensus 608 l~tg~~l~~~~--~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~--~V~~V~~sp~~~- 682 (1288)
+...+.-..+- .-.+.|.+++|+..- .+.|+|++.+|.+.|||+|..+.+..+..|.+ .+..++|+|+..
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkv-----qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKV-----SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhh-----hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 98754333331 135689999998652 67999999999999999999999988887765 367999999874
Q ss_pred EEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEE
Q 000781 683 YIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761 (1288)
Q Consensus 683 ~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr 761 (1288)
.|++++.| |.+-.|.+||+|. ...++++++|..-++.+.+|.... ..++++.+|+++-
T Consensus 221 ql~~As~d-----d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~----------------~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 221 QLLVASGD-----DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP----------------RLLLSSGKDNRII 279 (1049)
T ss_pred eeeeecCC-----CCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------hhhhcccCCCCee
Confidence 45554433 4457899999985 567899999999999998886432 2345555688888
Q ss_pred EEeCCcccc
Q 000781 762 QSQIQNDER 770 (1288)
Q Consensus 762 ~w~~~~~~~ 770 (1288)
.|+....+.
T Consensus 280 ~wN~~tgEv 288 (1049)
T KOG0307|consen 280 CWNPNTGEV 288 (1049)
T ss_pred EecCCCceE
Confidence 887655443
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=7.2e-12 Score=156.26 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=150.3
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
..+.++..|.+.|..+.| +.+.++-+++|..||+|.||+....... ..-+ -..-.+.|.||+|+
T Consensus 107 ~~la~~~~h~G~V~gLDf---N~~q~nlLASGa~~geI~iWDlnn~~tP--------~~~~-----~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDF---NPFQGNLLASGADDGEILIWDLNKPETP--------FTPG-----SQAPPSEIKCLSWN 170 (1049)
T ss_pred HHHhhhcccCCceeeeec---cccCCceeeccCCCCcEEEeccCCcCCC--------CCCC-----CCCCcccceEeccc
Confidence 345666889999999555 5566666999999999999765532211 0000 01135789999997
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCc--CEEEEEECCCCCCCCCCCEEEEEECC---CcEEEE
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGED---FSVALA 654 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~--~V~~l~~sp~~~~~~~g~~l~Sgs~D---gsV~lW 654 (1288)
. ...++|+||+.++.+-|||++..+.+-.|..|.+ .+..+.|+|+. ...++.++.| -.|.+|
T Consensus 171 r--------kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~-----aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 171 R--------KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH-----ATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred h--------hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC-----ceeeeeecCCCCCceeEee
Confidence 3 3458999999999999999999988888877765 47789999994 3455565554 489999
Q ss_pred ECCCc-eeEEEecCCCCCcEEEEEcCCC-CEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCcc
Q 000781 655 SLETL-RVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGIS 732 (1288)
Q Consensus 655 dl~t~-~~l~~l~gH~~~V~~V~~sp~~-~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~ 732 (1288)
|+|.. .+++.+++|...|.++.|++.+ .+|+ +++.|+.|.+|+.+||+.+..+....+-..-++||+...
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~D~~lll--------SsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQDPRLLL--------SSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCCCchhhh--------cccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 99964 5678899999999999999988 5555 445579999999999999999988777777788997654
No 159
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=5.2e-10 Score=122.93 Aligned_cols=180 Identities=17% Similarity=0.150 Sum_probs=133.9
Q ss_pred cccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccC
Q 000781 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1288)
Q Consensus 505 ~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~S 584 (1288)
...|...|.|+.+.....- +++|+.|++|++|+ +. .......+. ..+.|.|+..
T Consensus 90 igth~~~i~ci~~~~~~~~----vIsgsWD~~ik~wD--~R-------------~~~~~~~~d-~~kkVy~~~v------ 143 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGC----VISGSWDKTIKFWD--PR-------------NKVVVGTFD-QGKKVYCMDV------ 143 (323)
T ss_pred eccCCCceEEEEeeccCCe----EEEcccCccEEEEe--cc-------------ccccccccc-cCceEEEEec------
Confidence 4568999999888755444 99999999999954 22 111222222 2458999886
Q ss_pred CCCCccCcEEEEEECCCcEEEEeCCCCceEEE--EeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc---
Q 000781 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--- 659 (1288)
Q Consensus 585 pdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~--~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~--- 659 (1288)
.| +.|+.|..|..|.+||+++...... =..-.-.++|+++.|+ +.-++.+|-||.|.+=.++..
T Consensus 144 -~g----~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn------~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 144 -SG----NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN------GEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred -cC----CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC------CCceEEEeecceEEEEccCCchHH
Confidence 34 7899999999999999987653221 1123346899999997 678999999999998877765
Q ss_pred -eeEEEecCCCC---------CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeec
Q 000781 660 -RVERMFPGHPN---------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 660 -~~l~~l~gH~~---------~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+.-..|+.|.. +|++|+|+|-.+.|+||+. ||.|.+||+.+.+.++.+..-...|..+.||.
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs--------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS--------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC--------CceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 33456677743 6899999999999997543 49999999999999998888866676666654
No 160
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.29 E-value=3.7e-11 Score=137.56 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=151.9
Q ss_pred ccccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccc
Q 000781 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1288)
Q Consensus 477 kl~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d 556 (1288)
.+.+..+-+++.+||+..+.+.-+. .+..-.....+++..++.+. .++.+.||.|.||+
T Consensus 479 tLivGGeastlsiWDLAapTprika--eltssapaCyALa~spDakv----cFsccsdGnI~vwD--------------- 537 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKA--ELTSSAPACYALAISPDAKV----CFSCCSDGNIAVWD--------------- 537 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhh--hcCCcchhhhhhhcCCccce----eeeeccCCcEEEEE---------------
Confidence 3455566788999999887653211 11111223344444444444 77788999999954
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~ 636 (1288)
+.+...++.|+||++.+.|+.. ++|| ..|-||+.|.+||-||+++++.+... .....|.++..+|.
T Consensus 538 Lhnq~~VrqfqGhtDGascIdi-----s~dG----tklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~---- 603 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDI-----SKDG----TKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPT---- 603 (705)
T ss_pred cccceeeecccCCCCCceeEEe-----cCCC----ceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCC----
Confidence 5566689999999999999999 5788 99999999999999999998865443 23578999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
++.++.|=..+.|.|..... ...+.+.-|.+-|.++.|.+-|+++++.+ .|+.+..|.+.-|..+....
T Consensus 604 --~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStG--------kDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 604 --GDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTG--------KDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred --ccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecC--------chhhhhhccCccccceeecc
Confidence 89999999999999988763 34456777888999999999999999544 35899999998888765544
Q ss_pred CCCCceEEe
Q 000781 717 GTASHSMFD 725 (1288)
Q Consensus 717 GH~~~vi~~ 725 (1288)
. .+.|+++
T Consensus 673 E-~SsVlsC 680 (705)
T KOG0639|consen 673 E-SSSVLSC 680 (705)
T ss_pred c-cCcceee
Confidence 3 3355443
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.27 E-value=1.1e-10 Score=133.38 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=140.7
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCC-----------------------C------
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHN-----------------------S------ 550 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~-----------------------~------ 550 (1288)
.-...|.+|.+.|+++.|.+.+. ..+++.+.||+|+..++....... .
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~---s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANT---SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred CceEEeccCCccccceEecCCCh---hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence 34566788999999977755443 358999999999998863321100 0
Q ss_pred CCCccccCCce-eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc----eEEEEeccCcCEE
Q 000781 551 PGASLKVNSHV-SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN----LITVMHHHVAPVR 625 (1288)
Q Consensus 551 ~~~~~d~~t~~-~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~----~l~~~~~H~~~V~ 625 (1288)
....+|..++. ....+.-|...|+.++++|.+. .+|+|||.|.+++|||++.-. ++-....|...|.
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~ 373 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP--------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN 373 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCc--------hheeecccCcceeeeehhhhcCCCCcceecccccceee
Confidence 00112333322 2455667999999999998653 799999999999999998532 2233347999999
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCcEEEEECC----CceeEEEecCCCC------CcEEEEEcCCCCEEEEEecCCCccc
Q 000781 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLE----TLRVERMFPGHPN------YPAKVVWDCPRGYIACLCRDHSRTS 695 (1288)
Q Consensus 626 ~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~----t~~~l~~l~gH~~------~V~~V~~sp~~~~L~tg~~D~sgss 695 (1288)
+..|+|. +..+++.+.|..|+|||.. ...+..+++ |.. .+...+|+|+..++++|-..
T Consensus 374 sAyFSPs------~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~----- 441 (498)
T KOG4328|consen 374 SAYFSPS------GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYP----- 441 (498)
T ss_pred eeEEcCC------CCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccC-----
Confidence 9999999 5559999999999999983 333333332 321 24477999999999987654
Q ss_pred CCCCeEEEEECCCCcEEEEEeCCCC
Q 000781 696 DAVDVLFIWDVKTGARERVLRGTAS 720 (1288)
Q Consensus 696 D~DgtV~VWDl~tg~l~~~l~GH~~ 720 (1288)
..|-|+|-+.|+.+..+.+...
T Consensus 442 ---r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 442 ---RPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred ---cceeEEcCCCCEEeeeccCccc
Confidence 5799999999998888877665
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2e-10 Score=122.07 Aligned_cols=161 Identities=21% Similarity=0.344 Sum_probs=121.3
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.|..+|+|.+.....+....+ .-+....+...++|.++|+.++|+ +.+|++|+. |.|+=|.
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa-----~~~gk~~iv~eqahdgpiy~~~f~-----------d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSA-----EPPGKLKIVPEQAHDGPIYYLAFH-----------DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred EEEecCCCeEEEEEehhhhcccc-----CCCCCcceeeccccCCCeeeeeee-----------hhheeeccC-ceEEEee
Confidence 89999999999987654433211 122233556668999999999996 267888875 9999887
Q ss_pred CCCCce------E--EEEeccC-----cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEE
Q 000781 608 LGSGNL------I--TVMHHHV-----APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAK 674 (1288)
Q Consensus 608 l~tg~~------l--~~~~~H~-----~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~ 674 (1288)
.+.... + .....|. -.|+++...|. .+.++.++.|+.+..||+++|+..++++||+++|.+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccC------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 653211 0 1112233 36889999887 566777779999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 675 V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
++-......+++|+. ||++||||.+|++.++.+....
T Consensus 162 vv~R~~~~qilsG~E--------DGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 162 VVGRNANGQILSGAE--------DGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred eeecccCcceeecCC--------CccEEEEeccccceeEEecccc
Confidence 999777777775443 5999999999999998876544
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=8.9e-10 Score=126.15 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=120.1
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
+.|+.+.|.++... |+..+.+|.|++|+ +....+++.+.. .+.|....+++ |++|
T Consensus 345 G~v~~~~fsSdsk~----l~~~~~~GeV~v~n---------------l~~~~~~~rf~D-~G~v~gts~~~---S~ng-- 399 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKE----LLASGGTGEVYVWN---------------LRQNSCLHRFVD-DGSVHGTSLCI---SLNG-- 399 (514)
T ss_pred cEEeeEEEecCCcE----EEEEcCCceEEEEe---------------cCCcceEEEEee-cCccceeeeee---cCCC--
Confidence 45666666666654 77777899998844 555567777764 56676666665 6788
Q ss_pred cCcEEEEEECCCcEEEEeCCC------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE--CCCcEEEEECCCcee
Q 000781 590 FNEVLVSGSMDCSIRIWDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG--EDFSVALASLETLRV 661 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~t------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs--~DgsV~lWdl~t~~~ 661 (1288)
.+||+||..|-|-|||.++ .+++..+..-+..|+++.|+|+ .+.+|-+| .+..+|+-.+.+...
T Consensus 400 --~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 400 --SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred --ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEeccceee
Confidence 8999999999999999653 4567777677788999999999 67665554 588999999988777
Q ss_pred EEEecCC---CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 662 ERMFPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 662 l~~l~gH---~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
...|+.. -+.|+|++|+|.+.||++|.. +|.|.+|.+.
T Consensus 472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe--------~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE--------AGRVHLFKLH 512 (514)
T ss_pred eccCCCCCCcccceEEEEecCCCceEEeecC--------CCceeeEeec
Confidence 6666543 346899999999999998654 3899999874
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.23 E-value=2.4e-10 Score=126.08 Aligned_cols=123 Identities=23% Similarity=0.267 Sum_probs=107.1
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D 648 (1288)
|......++|.... .+| +.++|.||.-|.|+|.|+.++++...+.+|.+.|+.+.+.|+. .++++|+|.|
T Consensus 88 ~~Esfytcsw~yd~--~~~---~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-----~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYDS--NTG---NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-----PQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEecC--CCC---CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC-----CcEEEEecCC
Confidence 66677778886531 223 5799999999999999999999999999999999999999984 4799999999
Q ss_pred CcEEEEECCCceeEEEe---cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 649 FSVALASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~~l---~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
.+||+||+++..|+..| .||.+.|.+|.|+++|.++++++. |.++++|++.+.
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm--------Dhslk~W~l~~~ 213 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM--------DHSLKLWRLNVK 213 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC--------cceEEEEecChh
Confidence 99999999999999887 579999999999999999996444 589999999853
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=8.8e-10 Score=129.16 Aligned_cols=156 Identities=13% Similarity=0.184 Sum_probs=116.2
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
....+.|-++.|-+...+ ++.++ ...|+|+++. .+..++.+..-...|..++.| |
T Consensus 563 ~kskG~vq~v~FHPs~p~----lfVaT-q~~vRiYdL~---------------kqelvKkL~tg~kwiS~msih-----p 617 (733)
T KOG0650|consen 563 RKSKGLVQRVKFHPSKPY----LFVAT-QRSVRIYDLS---------------KQELVKKLLTGSKWISSMSIH-----P 617 (733)
T ss_pred hhcCCceeEEEecCCCce----EEEEe-ccceEEEehh---------------HHHHHHHHhcCCeeeeeeeec-----C
Confidence 334456667666555554 55553 4678885542 233344444445678888886 5
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCC-ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC------C
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE------T 658 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~------t 658 (1288)
.| ..|+.|+.|+.++.+|+.-. ++.+++..|...|++|+|++. -.+||+|+.|+++.|+.-. .
T Consensus 618 ~G----Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 618 NG----DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR------YPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred CC----CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc------cceeeeecCCCcEEEEeeeeehhhhc
Confidence 77 88999999999999999754 577889999999999999988 6799999999999998532 1
Q ss_pred c---eeEEEecCCCCC----cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 659 L---RVERMFPGHPNY----PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 659 ~---~~l~~l~gH~~~----V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
. -++..++||... |..+.|+|...+|++++. ||+|++|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA--------d~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA--------DGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCC--------CceEEee
Confidence 1 356788999654 788999999999996443 4899998
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.20 E-value=1e-09 Score=120.87 Aligned_cols=212 Identities=14% Similarity=0.176 Sum_probs=147.9
Q ss_pred cccccCccccccccCCCCCCCcceec--ccCCCcEEEEEeeecCcccCCE--EEEEEcCCcEEEEEecccccCCCCCCcc
Q 000781 480 LTFCQDTVPRSEHVDSRQAGDGRDDF--VHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~~~~~~~--~~h~~~Vts~~~is~~~~~p~~--lv~Gs~DG~I~i~~~d~~~~~~~~~~~~ 555 (1288)
.++.+.-+++|+..+.+ +..+| -.|-+.+++ .-+..|+|++ |++| ....|++ |+...+..
T Consensus 128 ~ssr~~PIh~wdaftG~----lraSy~~ydh~de~ta---AhsL~Fs~DGeqlfaG-ykrcirv--Fdt~RpGr------ 191 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGK----LRASYRAYDHQDEYTA---AHSLQFSPDGEQLFAG-YKRCIRV--FDTSRPGR------ 191 (406)
T ss_pred eccccCceeeeeccccc----cccchhhhhhHHhhhh---heeEEecCCCCeEeec-ccceEEE--eeccCCCC------
Confidence 34556667888877653 33333 245556654 2334455555 5555 6678898 44322210
Q ss_pred ccCCceeE-EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCC
Q 000781 556 KVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1288)
Q Consensus 556 d~~t~~~~-~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~ 634 (1288)
+++....+ +--.|..+-+.|++|+|+.. ..++.|+--.++-|+.-..+.++..+-+|.+.|+.+.|.++
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~--------~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed-- 261 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDS--------KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED-- 261 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCC--------cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC--
Confidence 11100000 10124477899999988532 68999999999999998889999999999999999999999
Q ss_pred CCCCCCEEEEEEC-CCcEEEEECCC-ceeEEEecCCCC-CcEEEEE--cCCCCEEEEEecCCCcccCCCCeEEEEECCC-
Q 000781 635 EHPWSDCFLSVGE-DFSVALASLET-LRVERMFPGHPN-YPAKVVW--DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT- 708 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~-DgsV~lWdl~t-~~~l~~l~gH~~-~V~~V~~--sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t- 708 (1288)
|+.|.+|+. |-.|..||+|. +.++..+.+|.. .-..|.| .|.+++|++| |.||.|++||+++
T Consensus 262 ----Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG--------~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 262 ----GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG--------DTDGSVRVWDLKDL 329 (406)
T ss_pred ----cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc--------CCCccEEEEecCCC
Confidence 788888876 88999999996 456788888875 3346666 6889999854 4459999999998
Q ss_pred CcEEEEEeCCCCceEEeeeec
Q 000781 709 GARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 709 g~l~~~l~GH~~~vi~~~~~~ 729 (1288)
|.....+..|...+..+.+.+
T Consensus 330 gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 330 GNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred CCcccccccccccccceecCc
Confidence 887788888877776555544
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.19 E-value=1.6e-10 Score=130.59 Aligned_cols=169 Identities=21% Similarity=0.220 Sum_probs=133.6
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
..|.++.|-.+.. +.+++|+.|..|++|........ ++ ..+-+.+..|.+|+.+|+++.| +|+|
T Consensus 14 ~pv~s~dfq~n~~---~~laT~G~D~~iriW~v~r~~~~---~~---~~~V~y~s~Ls~H~~aVN~vRf-----~p~g-- 77 (434)
T KOG1009|consen 14 EPVYSVDFQKNSL---NKLATAGGDKDIRIWKVNRSEPG---GG---DMKVEYLSSLSRHTRAVNVVRF-----SPDG-- 77 (434)
T ss_pred CceEEEEeccCcc---cceecccCccceeeeeeeecCCC---CC---ceeEEEeecccCCcceeEEEEE-----cCCc--
Confidence 4566655544444 13999999999999876533221 00 0122367788999999999999 5788
Q ss_pred cCcEEEEEECCCcEEEEeCC--------C--------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEE
Q 000781 590 FNEVLVSGSMDCSIRIWDLG--------S--------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~--------t--------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~l 653 (1288)
++|+||++++.|.+|-.. + ....+++.+|...|..++|+|+ +..+++++.|.++++
T Consensus 78 --elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 78 --ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------SNFLVSGSVDNSVRL 149 (434)
T ss_pred --CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC------CceeeeeeccceEEE
Confidence 999999999999999765 2 1234567889999999999999 899999999999999
Q ss_pred EECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 654 Wdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
||+..|+.+..+..|...|..++|.|.++|+++-+.| ...++.++...+
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d--------r~~~~~~~~~~~ 198 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD--------RHPEGFSAKLKQ 198 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhhhccC--------cccceeeeeeee
Confidence 9999999999999999999999999999999964433 567777765443
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.19 E-value=2.2e-10 Score=130.95 Aligned_cols=213 Identities=16% Similarity=0.074 Sum_probs=150.7
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
+....+..+|+++.|.+.... ..++.|...|.|-+|+++... +...-+..+..|.++|.++.|+|..
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~--~lva~GdK~G~VG~Wn~~~~~-----------~d~d~v~~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENR--KLVAVGDKGGQVGLWNFGTQE-----------KDKDGVYLFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred ceeEecccceEEEEecccCcc--eEEEEccCCCcEEEEecCCCC-----------CccCceEEeccCCccccceEecCCC
Confidence 344668889999777665442 238889899999998875221 1222467788999999999998732
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec--cCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~--H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
...+++.|.||+|++-|++.+..-..+.. -...+..+.|+.+ ...++.+..=|...+||++++.
T Consensus 247 --------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e------~~~vl~~~~~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 247 --------TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE------SRSVLFGDNVGNFNVIDLRTDG 312 (498)
T ss_pred --------hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCC------CccEEEeecccceEEEEeecCC
Confidence 26899999999999999987654333333 3445667777776 5667777766799999999876
Q ss_pred e-EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE----EEEEeCCCCceEEeeeecCcccee
Q 000781 661 V-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR----ERVLRGTASHSMFDHFCKGISMNS 735 (1288)
Q Consensus 661 ~-l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l----~~~l~GH~~~vi~~~~~~~~~~~~ 735 (1288)
. ...+.-|...|..|+++|...+++. +++-|++++|||++.-.. .-....|.-.|-.+-|++..
T Consensus 313 s~~~~~~lh~kKI~sv~~NP~~p~~la-------T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~---- 381 (498)
T KOG4328|consen 313 SEYENLRLHKKKITSVALNPVCPWFLA-------TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG---- 381 (498)
T ss_pred ccchhhhhhhcccceeecCCCCchhee-------ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC----
Confidence 5 5667778889999999998766552 333359999999986222 23344687777666555421
Q ss_pred eecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 736 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 736 ~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
| .++....|++||+|+.+
T Consensus 382 --g-----------tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 382 --G-----------TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred --C-----------ceEeeccCCceEEeecc
Confidence 1 24455569999999864
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.19 E-value=5.8e-10 Score=121.07 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=110.5
Q ss_pred EEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE-ecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 529 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 529 v~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+....|+++..|+ +++.+....+ ..|...|..+.|+| +. ..+|+||++|+.|++||
T Consensus 187 v~tt~d~tl~~~D---------------~RT~~~~~sI~dAHgq~vrdlDfNp-----nk---q~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 187 VATTSDSTLQFWD---------------LRTMKKNNSIEDAHGQRVRDLDFNP-----NK---QHILVTCGDDGYVRIWD 243 (370)
T ss_pred EEEeCCCcEEEEE---------------ccchhhhcchhhhhcceeeeccCCC-----Cc---eEEEEEcCCCccEEEEe
Confidence 3445678888744 4444333333 57889999999975 32 36999999999999999
Q ss_pred CCCC-ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc---------------------------
Q 000781 608 LGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--------------------------- 659 (1288)
Q Consensus 608 l~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~--------------------------- 659 (1288)
.+.. .++..+.+|...|.++.|+|.. .++++||+.|..|.+|....-
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCcc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 9855 4788999999999999999983 689999999999999964311
Q ss_pred --eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 660 --RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 660 --~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
..+.++..|.+.|++++|+..+.+++ ++-+-||.+.|=.+.
T Consensus 319 ~dg~l~tydehEDSVY~~aWSsadPWiF-------ASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 319 QDGQLETYDEHEDSVYALAWSSADPWIF-------ASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccceEEEeeccCCCeeE-------EEeccCceEEeecCC
Confidence 12346778999999999999999887 334445888776554
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.18 E-value=6.2e-09 Score=120.52 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=155.0
Q ss_pred cCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCcee
Q 000781 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1288)
Q Consensus 484 ~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~-DG~I~i~~~d~~~~~~~~~~~~d~~t~~~ 562 (1288)
+..+.+|+... .......+..|...|.++.+.++... ++.++. |+.+.+|+ ...++.
T Consensus 133 d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------~~~~~~ 190 (466)
T COG2319 133 DGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGKL----LASGSSLDGTIKLWD---------------LRTGKP 190 (466)
T ss_pred CccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCCE----EEecCCCCCceEEEE---------------cCCCce
Confidence 44667777664 11345667889999998888777765 777775 99999954 334557
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCc-EEEEEECCCcEEEEeCCCCceEE-EEeccCcCEEEEEECCCCCCCCCCC
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~-~L~SGs~D~tI~vWDl~tg~~l~-~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
...+.+|...|.+++|+ |++ . .+++++.|++|++||...+..+. .+.+|...+ ...|+|+ +.
T Consensus 191 ~~~~~~~~~~v~~~~~~-----~~~----~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------~~ 254 (466)
T COG2319 191 LSTLAGHTDPVSSLAFS-----PDG----GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------GS 254 (466)
T ss_pred EEeeccCCCceEEEEEc-----CCc----ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------CC
Confidence 88888999999999995 566 5 66666999999999999888888 688998885 4489988 67
Q ss_pred EEEEEECCCcEEEEECCCcee-EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe--C
Q 000781 641 CFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--G 717 (1288)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~t~~~-l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~--G 717 (1288)
.+++++.|+.+++||++.... +..+.+|...+.++.|+|++..+++++. |+.+++||++++....... +
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS--------DGTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC--------CCcEEEEEcCCCceEEEeeecc
Confidence 888999999999999997665 5555788889999999998888886432 3679999999988777766 8
Q ss_pred CCCceEEeee
Q 000781 718 TASHSMFDHF 727 (1288)
Q Consensus 718 H~~~vi~~~~ 727 (1288)
|...+....+
T Consensus 327 ~~~~~~~~~~ 336 (466)
T COG2319 327 HEGPVSSLSF 336 (466)
T ss_pred cCCceEEEEE
Confidence 8875554444
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.17 E-value=3.2e-10 Score=130.01 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=143.1
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
++.+..+++|......+.-.......+ +.-.|+.......+ +++|+..|.|.||+ ++..
T Consensus 53 ~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y----~~sgG~~~~Vkiwd---------------l~~k 111 (673)
T KOG4378|consen 53 MAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLY----EISGGQSGCVKIWD---------------LRAK 111 (673)
T ss_pred cCCceeEEEecccCCCCccceeecccc--chHHHHhhhhccee----eeccCcCceeeehh---------------hHHH
Confidence 445566777776654221112222222 23334333444455 89999999999954 4444
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEecc-CcCEEEEEECCCCCCCCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-VAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H-~~~V~~l~~sp~~~~~~~g 639 (1288)
.+++.+++|+..|+|+.|+ +.+.+|++++..|.|.|..+.++.....|..- ...|+-+.++|.. .
T Consensus 112 l~hr~lkdh~stvt~v~YN---------~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-----r 177 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYN---------NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-----R 177 (673)
T ss_pred HHhhhccCCcceeEEEEec---------CCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc-----c
Confidence 5788899999999999995 23479999999999999999999888888654 3466789999873 4
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEe-cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l-~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
..+.+++++|.|.+||+....++..+ ..|..+...|+|+|....|++ +-+.|+.|++||++.......+.
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v-------sVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV-------SVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE-------EecccceEEEeecccccccceee
Confidence 57889999999999999988887655 678888899999998776663 34446999999999877766654
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.15 E-value=8.4e-09 Score=119.39 Aligned_cols=159 Identities=24% Similarity=0.406 Sum_probs=128.4
Q ss_pred EEcCCcEEEEEecccccCCCCCCccccCC-ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC-CCcEEEEeC
Q 000781 531 GFFSGEIEVIQFDLFERHNSPGASLKVNS-HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDL 608 (1288)
Q Consensus 531 Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t-~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~-D~tI~vWDl 608 (1288)
+..|+.+.+|+.. . ......+.+|...|.++.|+ |++ ..+++++. |+.+++|++
T Consensus 130 ~~~d~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 130 SSLDGTVKLWDLS---------------TPGKLIRTLEGHSESVTSLAFS-----PDG----KLLASGSSLDGTIKLWDL 185 (466)
T ss_pred CCCCccEEEEEec---------------CCCeEEEEEecCcccEEEEEEC-----CCC----CEEEecCCCCCceEEEEc
Confidence 4448888885543 2 45778899999999999994 576 68888885 999999999
Q ss_pred CCCceEEEEeccCcCEEEEEECCCCCCCCCCC-EEEEEECCCcEEEEECCCceeEE-EecCCCCCcEEEEEcCCCCEEEE
Q 000781 609 GSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLRVER-MFPGHPNYPAKVVWDCPRGYIAC 686 (1288)
Q Consensus 609 ~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~-~l~Sgs~DgsV~lWdl~t~~~l~-~l~gH~~~V~~V~~sp~~~~L~t 686 (1288)
..++.+..+.+|...|.++.|+|+ +. .+++++.|++|++||.+.+..+. .+.+|...+ -..|+|++.++++
T Consensus 186 ~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 186 RTGKPLSTLAGHTDPVSSLAFSPD------GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred CCCceEEeeccCCCceEEEEEcCC------cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 999999999999999999999988 55 66666999999999999888888 799998775 4489999988885
Q ss_pred EecCCCcccCCCCeEEEEECCCCcE-EEEEeCCCCceEEeeee
Q 000781 687 LCRDHSRTSDAVDVLFIWDVKTGAR-ERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 687 g~~D~sgssD~DgtV~VWDl~tg~l-~~~l~GH~~~vi~~~~~ 728 (1288)
++. |+.+++|+++.... ...+.+|...+....+.
T Consensus 259 ~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 259 GSS--------DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred ecC--------CCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 443 48999999987664 55557887777655444
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.13 E-value=3e-11 Score=145.15 Aligned_cols=191 Identities=19% Similarity=0.279 Sum_probs=142.5
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
....+.+|...|.|..|--...+ +++|+.|..++||. .++..+....+||.+.++.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~----Iitgsdd~lvKiwS---------------~et~~~lAs~rGhs~ditdlavs- 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRY----IITGSDDRLVKIWS---------------METARCLASCRGHSGDITDLAVS- 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccce----EeecCccceeeeee---------------ccchhhhccCCCCccccchhccc-
Confidence 33455789999999888777777 99999999999955 55677889999999999999984
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL- 659 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~- 659 (1288)
.+ +-+++++|.|+.|++|-+.++.++..+.+|++.|++++|+|. .+.+.||++++||.+-.
T Consensus 242 ----~~----n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----------~sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 242 ----SN----NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----------ASSSDDGTCRIWDARLEP 303 (1113)
T ss_pred ----hh----hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----------ccCCCCCceEeccccccc
Confidence 22 368999999999999999999999999999999999999997 27789999999998711
Q ss_pred -------------eeEE--Ee--------cCC------CCCcEEEEEcCCCCEEEEEecCCC---cccCCCCeEEEEECC
Q 000781 660 -------------RVER--MF--------PGH------PNYPAKVVWDCPRGYIACLCRDHS---RTSDAVDVLFIWDVK 707 (1288)
Q Consensus 660 -------------~~l~--~l--------~gH------~~~V~~V~~sp~~~~L~tg~~D~s---gssD~DgtV~VWDl~ 707 (1288)
..+. .+ .+. ....-+++|+..+-.++++..|.+ .++-.+..+++|++-
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 0000 00 000 001234455544444444433311 001123578999999
Q ss_pred CCcEEEEEeCCCCceEEeeeec
Q 000781 708 TGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 708 tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+|++++.+.||...+..+.+.+
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cchhhhhhcccccceeeeeecC
Confidence 9999999999999998776665
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.12 E-value=7.4e-09 Score=114.17 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=113.6
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
+.+.|..+ ....+..+++|+....+-|..++ .+.+...+-||.+.|+-|.|+ +||
T Consensus 208 giisc~a~---sP~~~~~~a~gsY~q~~giy~~~---------------~~~pl~llggh~gGvThL~~~-----edG-- 262 (406)
T KOG2919|consen 208 GIISCFAF---SPMDSKTLAVGSYGQRVGIYNDD---------------GRRPLQLLGGHGGGVTHLQWC-----EDG-- 262 (406)
T ss_pred ceeeeeec---cCCCCcceeeecccceeeeEecC---------------CCCceeeecccCCCeeeEEec-----cCc--
Confidence 45555333 33334458999988888886655 344788899999999999996 588
Q ss_pred cCcEEEEEEC-CCcEEEEeCCC-CceEEEEeccCc-CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC-ceeEEEe
Q 000781 590 FNEVLVSGSM-DCSIRIWDLGS-GNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMF 665 (1288)
Q Consensus 590 ~~~~L~SGs~-D~tI~vWDl~t-g~~l~~~~~H~~-~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t-~~~l~~l 665 (1288)
+.|++|+. |-.|..||++. +.++-.+..|.+ .-..|.|.-+ |.++.|++|+.||.|++||+++ +..+..+
T Consensus 263 --n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld----~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 263 --NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD----PKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred --CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecC----CCCceeeccCCCccEEEEecCCCCCccccc
Confidence 88888885 67899999985 456677777766 3344555433 2289999999999999999998 7778888
Q ss_pred cCCCCCcEEEEEcCCCCEEEE
Q 000781 666 PGHPNYPAKVVWDCPRGYIAC 686 (1288)
Q Consensus 666 ~gH~~~V~~V~~sp~~~~L~t 686 (1288)
..|..-|+.|+++|--.+++|
T Consensus 337 ~~~sd~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPILAT 357 (406)
T ss_pred ccccccccceecCcccceeee
Confidence 899999999999999888886
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.12 E-value=1.1e-09 Score=119.12 Aligned_cols=218 Identities=18% Similarity=0.190 Sum_probs=155.6
Q ss_pred cCCCcEEEEEeeecCc-ccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 507 HKEKIVSSSMVISESF-YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~-~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
.|.-.++.++++++.. ..|+.|++. +..+++|+............ .+.+. +-..|..++++..|+. -
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~--~L~~~----kns~~~aPlTSFDWne----~ 161 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQS--VLNNN----KNSEFCAPLTSFDWNE----V 161 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhh--hhccC----cccccCCccccccccc----C
Confidence 4777889999998875 567666654 55899987653211000000 01111 1124567899999963 2
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCCc---eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeE
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg~---~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l 662 (1288)
| .+++.+.|-|.|..|||+++|. ....+-.|...|..++|...+ -+.|+|++.||+||++|+|..+.-
T Consensus 162 d----p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 162 D----PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred C----cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----cceEEEecCCCcEEEEEecccccc
Confidence 3 3899999999999999999874 355678999999999999863 479999999999999999976542
Q ss_pred E---EecCCCCCcEEEEEcCCC-CEEEEEecCCCcccCCCCeEEEEECCC-CcEEEEEeCCCCceEEeeeecCccceeee
Q 000781 663 R---MFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSIS 737 (1288)
Q Consensus 663 ~---~l~gH~~~V~~V~~sp~~-~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~~~~~~~~s 737 (1288)
. .=+....+...++|++.+ +|+++-..| ...|.|-|+|. +..+..+++|++.|..+.+.+.....+++
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~d-------S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-------SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcC-------CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 2 222213467899999866 567764444 36899999997 67789999999999988888765544444
Q ss_pred cceeeCcccccCCceeeccCCcEEEEeCCcc
Q 000781 738 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1288)
Q Consensus 738 gsi~~w~~~~s~~l~~~~~D~tvr~w~~~~~ 768 (1288)
+ ..|....+|++...
T Consensus 306 a----------------GDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 306 A----------------GDDCQALIWDLQQM 320 (364)
T ss_pred c----------------CCcceEEEEecccc
Confidence 3 24888999998643
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.11 E-value=7.2e-10 Score=125.39 Aligned_cols=232 Identities=16% Similarity=0.190 Sum_probs=161.4
Q ss_pred ccccccCccccccccCCCCCC-----CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCC-
Q 000781 479 DLTFCQDTVPRSEHVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG- 552 (1288)
Q Consensus 479 ~~s~~~s~~~lWd~~~~~~~~-----~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~- 552 (1288)
.+...+..+++|......+.+ .....+..|...|+++.|.++... +++|+.+|.+.+|.-.......+..
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel----LASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL----LASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred ecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe----eeecCCCceEEEEEecCcCCccccch
Confidence 334445667777776665544 223445899999999776666665 9999999999997643111100100
Q ss_pred CccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCC
Q 000781 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPP 632 (1288)
Q Consensus 553 ~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~ 632 (1288)
..-+-+.....+.+.+|...|..++| +||+ .++++|+.|.++++||+..|+.+..+..|...|..++|.|.
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~W-----s~d~----~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAW-----SPDS----NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhc-----cCCC----ceeeeeeccceEEEEEeccceeEeeccccccccceeecchh
Confidence 00112334567889999999999999 5677 99999999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECCCceeEEE---------------------ecCC--CCCcEEEEEcCCCCEEEEEec
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERM---------------------FPGH--PNYPAKVVWDCPRGYIACLCR 689 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~---------------------l~gH--~~~V~~V~~sp~~~~L~tg~~ 689 (1288)
++++++-+.|+..+.+++...+.++. +..- ..+...++|+|+|.+|++...
T Consensus 177 ------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 177 ------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred ------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 78999999999777777654432211 1111 123457799999999997543
Q ss_pred CCCcccCC-CCeEEEEECCC-CcEEEEEeCCCCceEEeeeec
Q 000781 690 DHSRTSDA-VDVLFIWDVKT-GARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 690 D~sgssD~-DgtV~VWDl~t-g~l~~~l~GH~~~vi~~~~~~ 729 (1288)
-...+++. -++.|+++-+. .++...+.+-...++.+.+|+
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 21011111 13456776542 455667778887888888886
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.10 E-value=2.6e-07 Score=109.39 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=172.6
Q ss_pred CCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccccccc
Q 000781 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1288)
Q Consensus 12 ~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~ 91 (1288)
..|..|+|.-++|-|||..|+-+ .+..+.++|.+. ...++.|.||+..|.|+++
T Consensus 8 r~~~~hci~d~afkPDGsqL~lA-Ag~rlliyD~nd-----G~llqtLKgHKDtVycVAy-------------------- 61 (1081)
T KOG1538|consen 8 RDKAEHCINDIAFKPDGTQLILA-AGSRLLVYDTSD-----GTLLQPLKGHKDTVYCVAY-------------------- 61 (1081)
T ss_pred hcccccchheeEECCCCceEEEe-cCCEEEEEeCCC-----cccccccccccceEEEEEE--------------------
Confidence 45778999999999999877765 567899999996 5667889999999999965
Q ss_pred CcccccccCCCCEEEEEeCCCeEEEEECC-CCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeecc-------CCccc
Q 000781 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFID-------TNQLS 163 (1288)
Q Consensus 92 ~~~~~~~s~d~~~LvS~s~DG~l~vWdl~-~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~-------~~~~~ 163 (1288)
+.||.+++||++|..|.+|+-. .|...-+ .. .....+.+-|.+ +....|+.+| ...+.
T Consensus 62 -------s~dGkrFASG~aDK~VI~W~~klEG~LkYS--H~---D~IQCMsFNP~~--h~LasCsLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 62 -------AKDGKRFASGSADKSVIIWTSKLEGILKYS--HN---DAIQCMSFNPIT--HQLASCSLSDFGLWSPEQKSVS 127 (1081)
T ss_pred -------ccCCceeccCCCceeEEEecccccceeeec--cC---CeeeEeecCchH--HHhhhcchhhccccChhhhhHH
Confidence 6679999999999999999875 3333211 11 122222222221 1223333222 22222
Q ss_pred ccccccccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEE
Q 000781 164 DHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1288)
Q Consensus 164 ~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~i 243 (1288)
...+.....++.-..|+.+..-+.-.++|-|-+...-+-+..--.|. ...||.++++.++...+ .++++.....+.++
T Consensus 128 K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg-~Nspiwsi~~~p~sg~G-~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGG-SNSPIWSICWNPSSGEG-RNDILAVADWGQTL 205 (1081)
T ss_pred hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCC-CCCCceEEEecCCCCCC-ccceEEEEecccee
Confidence 23444444455555666666666667777777654433222222110 34569999999763333 37888888899999
Q ss_pred EEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecc
Q 000781 244 LVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNL 321 (1288)
Q Consensus 244 kvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~ 321 (1288)
....+.+.- .+ .. ..+.=...+++++++|+++++.++++. +|.. .|..+|..
T Consensus 206 SFy~LsG~~----Ig--------k~------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR--~GvrLGTv------ 259 (1081)
T KOG1538|consen 206 SFYQLSGKQ----IG--------KD------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTR--DGVRLGTV------ 259 (1081)
T ss_pred EEEEeccee----ec--------cc------ccCCCCchhheeccCCcEEEEccCCCceEEEee--cCeEEeec------
Confidence 988888741 11 01 111112378999999999999998887 5544 33222322
Q ss_pred eeecCCCCCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEc
Q 000781 322 FCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAIS 376 (1288)
Q Consensus 322 l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~ 376 (1288)
.. ...|+-..-+ ..+ +..+++++.||++.-|++-
T Consensus 260 ----g~--~D~WIWtV~~-~PN--------------sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 260 ----GE--QDSWIWTVQA-KPN--------------SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ----cc--cceeEEEEEE-ccC--------------CceEEEEEccCeeehhhhH
Confidence 11 2334433333 112 2278999999999888875
No 178
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=8.9e-09 Score=118.12 Aligned_cols=284 Identities=10% Similarity=0.074 Sum_probs=180.2
Q ss_pred CCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccC
Q 000781 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1288)
Q Consensus 13 ~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~ 92 (1288)
.|....|+++.|.|.-+.|.+++.||+++|+.++. +....++-+.=-..||.+..|
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDG---k~N~~lqS~~l~~fPi~~a~f--------------------- 265 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG---KVNPKLQSIHLEKFPIQKAEF--------------------- 265 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecC---ccChhheeeeeccCccceeee---------------------
Confidence 45556799999999999999999999999999983 222333344445788888866
Q ss_pred cccccccCCCC-EEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCC-ceeeeeCCCCCceEEEEeeccCCccccccc---
Q 000781 93 NVMGKSSLDNG-ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSP-SVICTLPSNPRYVCIGCCFIDTNQLSDHHS--- 167 (1288)
Q Consensus 93 ~~~~~~s~d~~-~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~-s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~--- 167 (1288)
.++|. .+++++.-..+-.||+.+++....... .+.+ ..+..+..++....+...| ..+++...|.
T Consensus 266 ------~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~---~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 266 ------APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP---YGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTK 335 (514)
T ss_pred ------cCCCceEEEecccceEEEEeeccccccccccCC---CCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhh
Confidence 45567 899999999999999998886533222 1322 1233332222222333333 1222222211
Q ss_pred -------ccc-cccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCce--EEEEEeccCCCCcceEEEEe
Q 000781 168 -------FES-VEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWK--FMDVVSLGEDMGKHYGLMVD 237 (1288)
Q Consensus 168 -------~~~-~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is--~l~v~~~~~~~~~~~~lls~ 237 (1288)
++. +.+..++.|....+....+++|++||.....+++.+.. .+.+. .+|.+.. ++++++|
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D----~G~v~gts~~~S~n------g~ylA~G 405 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD----DGSVHGTSLCISLN------GSYLATG 405 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee----cCccceeeeeecCC------CceEEec
Confidence 111 11233567777778888899999999999988888775 33443 4444432 4599999
Q ss_pred cCCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce-EEeecCCCcccceee
Q 000781 238 SVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEIC 316 (1288)
Q Consensus 238 s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~-i~~~l~~~~~~g~~s 316 (1288)
|..|++-|++..+-. ... .-+.+....-+...+..+.|++|++.++.++.... -+++. .+
T Consensus 406 S~~GiVNIYd~~s~~---~s~--------~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLV-------Hv- 466 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCF---AST--------NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLV-------HV- 466 (514)
T ss_pred cCcceEEEeccchhh---ccC--------CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEE-------ec-
Confidence 999999999977631 111 22334444555667889999999999888876544 44441 11
Q ss_pred eeecceeecCCC----CCcceEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcC
Q 000781 317 FVDNLFCLEGGS----TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY 377 (1288)
Q Consensus 317 ~~~s~l~~~~~~----~~~~~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~ 377 (1288)
. +.....+.| +-.++....|.+.+. .+++++++|++.+|+|..
T Consensus 467 -P-S~TVFsNfP~~n~~vg~vtc~aFSP~sG----------------~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 467 -P-SCTVFSNFPTSNTKVGHVTCMAFSPNSG----------------YLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred -c-ceeeeccCCCCCCcccceEEEEecCCCc----------------eEEeecCCCceeeEeecc
Confidence 1 111111111 112455666663344 799999999999999863
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.03 E-value=4.8e-11 Score=143.45 Aligned_cols=122 Identities=19% Similarity=0.350 Sum_probs=110.1
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
.-+.++.|.||.++|+|..|. -.| .++++|+.|..++||..+++.++....||.+.|+.++.+.+
T Consensus 179 kmk~ikrLlgH~naVyca~fD-----rtg----~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------ 243 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFD-----RTG----RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------ 243 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeec-----ccc----ceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------
Confidence 344667788999999999994 456 89999999999999999999999999999999999999887
Q ss_pred CCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
...++++|.|..|++|-++++.++..+.||++.|++|+|+|-. +++| ||++++||.+
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----------sss~-dgt~~~wd~r 300 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----------SSSD-DGTCRIWDAR 300 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----------cCCC-CCceEecccc
Confidence 5789999999999999999999999999999999999999974 1344 7999999987
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=3e-09 Score=115.85 Aligned_cols=167 Identities=16% Similarity=0.191 Sum_probs=125.0
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCC
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Spd 586 (1288)
.+...+++ ...+...|+.+.+.+-|-+..||+.... ..+.....|-.|...|..++|. .+
T Consensus 148 ~~~aPlTS---FDWne~dp~~igtSSiDTTCTiWdie~~------------~~~~vkTQLIAHDKEV~DIaf~-----~~ 207 (364)
T KOG0290|consen 148 EFCAPLTS---FDWNEVDPNLIGTSSIDTTCTIWDIETG------------VSGTVKTQLIAHDKEVYDIAFL-----KG 207 (364)
T ss_pred ccCCcccc---cccccCCcceeEeecccCeEEEEEEeec------------cccceeeEEEecCcceeEEEec-----cC
Confidence 34556777 4556677888999999999999654311 0223456788999999999994 33
Q ss_pred CCccCcEEEEEECCCcEEEEeCCCCceEEEE-ec--cCcCEEEEEECCCCCCCCCCCEEEEEECC-CcEEEEECCC-cee
Q 000781 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HH--HVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLET-LRV 661 (1288)
Q Consensus 587 G~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~-~~--H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D-gsV~lWdl~t-~~~ 661 (1288)
| .+.++|.|.||+||++|++..+--..+ .. -..+...++|++.. -+++++-..| ..|.+.|+|. ..+
T Consensus 208 s---~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 208 S---RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred c---cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCCceEEEEEecCCCcc
Confidence 3 479999999999999999876532222 21 24577888888763 4688887765 5799999996 467
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
+..+++|.+.|+.|+|.|....-++.| +| |..+-+||+.+
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hicta------GD-D~qaliWDl~q 319 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTA------GD-DCQALIWDLQQ 319 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeec------CC-cceEEEEeccc
Confidence 889999999999999999876666543 33 79999999975
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=3e-08 Score=122.64 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=113.5
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcC--EEEEEEeecccCCCC
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA--VLCLAAHRMVGTAKG 587 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~--V~~L~~~p~~~SpdG 587 (1288)
..|++ ++......+.++.|+.||.+++++- ... .....+...+.|+.. |..+.+. +.|
T Consensus 1209 t~vTa---LS~~~~~gn~i~AGfaDGsvRvyD~--R~a----------~~ds~v~~~R~h~~~~~Iv~~slq-----~~G 1268 (1387)
T KOG1517|consen 1209 TLVTA---LSADLVHGNIIAAGFADGSVRVYDR--RMA----------PPDSLVCVYREHNDVEPIVHLSLQ-----RQG 1268 (1387)
T ss_pred cccee---ecccccCCceEEEeecCCceEEeec--ccC----------CccccceeecccCCcccceeEEee-----cCC
Confidence 34444 3334444566999999999999543 211 111356778899888 9999985 344
Q ss_pred CccCcEEEEEECCCcEEEEeCCCCceE--EEEeccC--c-CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeE
Q 000781 588 WSFNEVLVSGSMDCSIRIWDLGSGNLI--TVMHHHV--A-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1288)
Q Consensus 588 ~~~~~~L~SGs~D~tI~vWDl~tg~~l--~~~~~H~--~-~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l 662 (1288)
...|+||+.||.|++||++..... .....|. | .++++..++. ...++||+. +.|+||++.. +.+
T Consensus 1269 ---~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h------apiiAsGs~-q~ikIy~~~G-~~l 1337 (1387)
T KOG1517|consen 1269 ---LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH------APIIASGSA-QLIKIYSLSG-EQL 1337 (1387)
T ss_pred ---CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC------CCeeeecCc-ceEEEEecCh-hhh
Confidence 237999999999999999874221 2233343 4 5999999887 789999999 9999999873 333
Q ss_pred EEecCC-------CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 663 RMFPGH-------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 663 ~~l~gH-------~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
..++.+ .+.+.|++|+|..-.|++|.. |.+|.||.-+.++
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~--------Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA--------DSTVSIYSCEKPR 1384 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccC--------CceEEEeecCCcC
Confidence 333322 235789999999888886533 5899999876543
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.02 E-value=8.9e-09 Score=112.04 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=119.0
Q ss_pred CCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCC
Q 000781 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1288)
Q Consensus 508 h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG 587 (1288)
+-+.|.|+.+-++... +++- .|..|.+|+.+......+. +.. ..-.+|+...++-+|+|. .||
T Consensus 122 avg~i~cvew~Pns~k----lasm-~dn~i~l~~l~ess~~vae-----v~s----s~s~e~~~~ftsg~WspH---Hdg 184 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDK----LASM-DDNNIVLWSLDESSKIVAE-----VLS----SESAEMRHSFTSGAWSPH---HDG 184 (370)
T ss_pred HhCceeeEEEcCCCCe----eEEe-ccCceEEEEcccCcchhee-----ecc----cccccccceecccccCCC---Ccc
Confidence 4458899777665543 5544 5888988776533221110 110 001136667788889873 366
Q ss_pred CccCcEEEEEECCCcEEEEeCCCCceEEEE-eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC-ceeEEEe
Q 000781 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMF 665 (1288)
Q Consensus 588 ~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~-~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t-~~~l~~l 665 (1288)
+.+++. .|++++.||+++.++...+ ..|...|+.+.|+|+. ..++++|++|+.|++||.|. ..+++.+
T Consensus 185 ----nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-----q~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 185 ----NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-----QHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred ----ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-----eEEEEEcCCCccEEEEeccCCCcccccc
Confidence 666665 4899999999998876655 4688899999999983 45899999999999999985 5678999
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 666 ~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
++|...|++|.|+|....|+.. +++ |..|.+|...+
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs-----~~S--Ds~V~Lsca~s 290 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILS-----GGS--DSAVNLSCASS 290 (370)
T ss_pred CCCceEEEEEEecCccceEEEe-----cCC--CceeEEEeccc
Confidence 9999999999999976655521 223 47999997754
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=4.1e-09 Score=117.18 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=113.2
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.+..+|+|+++++. +++.+..+++|...++.+.|.- -|+ .+.+.||+.||+||+||
T Consensus 43 vav~lSngsv~lyd~~---------------tg~~l~~fk~~~~~~N~vrf~~----~ds---~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKG---------------TGQLLEEFKGPPATTNGVRFIS----CDS---PHGVISCSSDGTVRLWD 100 (376)
T ss_pred EEEEecCCeEEEEecc---------------chhhhheecCCCCcccceEEec----CCC---CCeeEEeccCCeEEEEE
Confidence 8999999999996644 5667889999999999999952 222 36799999999999999
Q ss_pred CCCCce--EEEEeccC-cCEEEEEECCCCCCCCCCCEEEEEE----CCCcEEEEECCCcee-EEE-ecCCCCCcEEEEEc
Q 000781 608 LGSGNL--ITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG----EDFSVALASLETLRV-ERM-FPGHPNYPAKVVWD 678 (1288)
Q Consensus 608 l~tg~~--l~~~~~H~-~~V~~l~~sp~~~~~~~g~~l~Sgs----~DgsV~lWdl~t~~~-l~~-l~gH~~~V~~V~~s 678 (1288)
+++... ...+..|. .+-.|++..-. ++.+++|. .|-.|.+||.|..+. +.. ...|.+.|++|+|+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCK------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCc------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence 987654 34455665 46677776544 67888885 478999999998766 443 46899999999999
Q ss_pred CCC-CEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 679 CPR-GYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 679 p~~-~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
|.. +.|++|+. ||-|.|+|++.-
T Consensus 175 P~~pnlLlSGSv--------DGLvnlfD~~~d 198 (376)
T KOG1188|consen 175 PSDPNLLLSGSV--------DGLVNLFDTKKD 198 (376)
T ss_pred CCCCCeEEeecc--------cceEEeeecCCC
Confidence 976 45665433 499999999754
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=3.2e-08 Score=110.88 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=157.8
Q ss_pred CCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCC-CCcceeeEEeec-cccceEEeEeccccccccCccccccccccc
Q 000781 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSS-YSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1288)
Q Consensus 14 ~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~-~~~~~p~~~l~G-H~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~ 91 (1288)
.+++||.|+.||.+++.||+|+.|-.+++|+++..- ..-.+|+.+... |...|-||+|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-------------------- 113 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-------------------- 113 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE--------------------
Confidence 467899999999999999999999999999997310 122367776664 5699999987
Q ss_pred CcccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccccc
Q 000781 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171 (1288)
Q Consensus 92 ~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~ 171 (1288)
...+.++.||..+|+|.+-|+.+.+-+...... ..--.+..+...+-...++...
T Consensus 114 -------~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~---~~~~~VY~m~~~P~DN~~~~~t--------------- 168 (609)
T KOG4227|consen 114 -------DLENRFLYSGERWGTVIKHDIETKQSIYVANEN---NNRGDVYHMDQHPTDNTLIVVT--------------- 168 (609)
T ss_pred -------ccCCeeEecCCCcceeEeeecccceeeeeeccc---CcccceeecccCCCCceEEEEe---------------
Confidence 344789999999999999999987765443222 1111233333333233333333
Q ss_pred ccccccccccCCCCCCCCceEEEEecCCce---EEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeec
Q 000781 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLT---IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPIS 248 (1288)
Q Consensus 172 ~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~---vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l 248 (1288)
..+.|.+||...-. -+++... ........ .+.| .. ...|++.+..+-.-||+.
T Consensus 169 ----------------~~~~V~~~D~Rd~~~~~~~~~~AN---~~~~F~t~-~F~P--~~--P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 169 ----------------RAKLVSFIDNRDRQNPISLVLPAN---SGKNFYTA-EFHP--ET--PALILVNSETGGPNVFDR 224 (609)
T ss_pred ----------------cCceEEEEeccCCCCCCceeeecC---CCccceee-eecC--CC--ceeEEeccccCCCCceee
Confidence 56778888875532 0111111 00001111 1112 11 236677776666778998
Q ss_pred cCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecC
Q 000781 249 KESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEG 326 (1288)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~ 326 (1288)
... ..++|..+ ..+.+..-+. .=-.+.+++.|+.++.+-...| +||++.+. + .++....
T Consensus 225 R~~------~~~~~~~~-~~~~L~~~~~---~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R-----~----~V~k~D~ 285 (609)
T KOG4227|consen 225 RMQ------ARPVYQRS-MFKGLPQENT---EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR-----C----FVLKSDH 285 (609)
T ss_pred ccc------cchHHhhh-ccccCcccch---hhhheeeCCCCCeehhhhccCCCEEeeeeccc-----c----eeEeccC
Confidence 764 44555431 1122211110 0034678999999888877777 78874432 1 1222222
Q ss_pred CCCCcc----eEEEEEeecccccccccccccccccceeEEEEeCCCCEEEEEEcCCCccccc
Q 000781 327 GSTNSY----VIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY 384 (1288)
Q Consensus 327 ~~~~~~----~~gg~fl~~~d~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~~~~~~~~ 384 (1288)
.+++.+ .....|+ +| ..++.++.+=.+++|++|..+..+..
T Consensus 286 N~~GY~N~~T~KS~~F~--~D---------------~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFI--DD---------------YTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred CCCcceeeeeeeeeeee--cc---------------eeeeccCcccceEEEecCCCccccCc
Confidence 222221 1233444 33 25888888888999999976655553
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.95 E-value=3.9e-08 Score=120.57 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=166.1
Q ss_pred CCCeeeEEEeeccceEEEeeeeeccccccccccCeEEEEecccCCCCCCcceeEEeecCccce----eecCccccCCCCC
Q 000781 397 SGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD----WVNNSTFLDENEG 472 (1288)
Q Consensus 397 ~~~~~~v~f~~~~~~L~~v~s~~~~~~~~l~~~p~i~iwsl~~~~~~~~~~~~~l~~G~~~G~----W~~~~~~~~~~~g 472 (1288)
...+..+.|++....++....- .+ .|.+|++...+..+............+-. |..... +
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y----~G------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~---~--- 305 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCY----NG------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH---N--- 305 (555)
T ss_pred CCceeEEEeccCCcceEEeecc----Cc------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC---C---
Confidence 4566788888887777666411 12 38888765443221111111111111111 544321 0
Q ss_pred cccCccccccccCccccccccCCCC-CCCcceecc-------cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecc
Q 000781 473 SCTGKSDLTFCQDTVPRSEHVDSRQ-AGDGRDDFV-------HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL 544 (1288)
Q Consensus 473 ~~v~kl~~s~~~s~~~lWd~~~~~~-~~~~~~~~~-------~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~ 544 (1288)
-.+...+.++.+..|+...-.. ......... .....++++.|.. ..|+.++.|+++|.|.......
T Consensus 306 ---~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 306 ---TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ---CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCcEEEEEeccC
Confidence 1355666788899997654332 211111111 1123456655544 3455699999999998844321
Q ss_pred cccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC-CCceEEEEeccCcC
Q 000781 545 FERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAP 623 (1288)
Q Consensus 545 ~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~-tg~~l~~~~~H~~~ 623 (1288)
..... ....+.+..+..|.+.|+++.++|-+. ..+.|++ |-+|+||.-. ...++..+..+...
T Consensus 380 ~~~~~-------~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 380 YTPAP-------EVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred Ccccc-------cccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccce
Confidence 11100 011234556778999999999976322 5566666 9999999987 66788888889999
Q ss_pred EEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc--eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeE
Q 000781 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1288)
Q Consensus 624 V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~--~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV 701 (1288)
|++++|+|.. ..+|+++..||.+-+|||... +++.+..-+....+.+.|++.|..|++|.. .|++
T Consensus 444 v~~vaWSptr-----pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~--------~G~~ 510 (555)
T KOG1587|consen 444 VTDVAWSPTR-----PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA--------NGTT 510 (555)
T ss_pred eeeeEEcCcC-----ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC--------CCcE
Confidence 9999999984 368999999999999999753 556666555556678999999999997544 4899
Q ss_pred EEEECCC
Q 000781 702 FIWDVKT 708 (1288)
Q Consensus 702 ~VWDl~t 708 (1288)
++|++..
T Consensus 511 ~~~~l~~ 517 (555)
T KOG1587|consen 511 HILKLSE 517 (555)
T ss_pred EEEEcCc
Confidence 9999954
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.7e-09 Score=125.53 Aligned_cols=126 Identities=23% Similarity=0.317 Sum_probs=108.4
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEE-eccCcCEEEEEECCCCCCCCCCC
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~-~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
..+.|.||++-|+||.| +.|| .+|+|||+|-.+.|||....++++.+ .+|++.|.++.|-|... ..
T Consensus 42 lE~eL~GH~GCVN~LeW-----n~dG----~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn----nr 108 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEW-----NADG----ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN----NR 108 (758)
T ss_pred hhhhhccccceecceee-----cCCC----CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC----Ce
Confidence 45678999999999999 5788 99999999999999999988888886 57999999999999843 56
Q ss_pred EEEEEECCCcEEEEECCC----------ceeEEEecCCCCCcEEEEEcCCC-CEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 641 CFLSVGEDFSVALASLET----------LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~t----------~~~l~~l~gH~~~V~~V~~sp~~-~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
.++||+.|..|+++|+.. ....+.+..|...|..|+-.|++ +.+.+ +.+||+|+-+|++.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws--------asEDGtirQyDiRE 179 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS--------ASEDGTIRQYDIRE 179 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE--------ecCCcceeeecccC
Confidence 999999999999999984 24556778899999999999999 45554 33469999999986
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.1e-08 Score=117.92 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=92.3
Q ss_pred cEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcC--EEEEEEeecccCCCCC
Q 000781 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGW 588 (1288)
Q Consensus 511 ~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~--V~~L~~~p~~~SpdG~ 588 (1288)
.|+|++|..+..- ++....|-.|++ |...............+.....+.++||.+. |.++-|- -|..
T Consensus 338 ~ITgl~Ysh~~sE----lLaSYnDe~IYL--F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf----GPrs- 406 (559)
T KOG1334|consen 338 NITGLVYSHDGSE----LLASYNDEDIYL--FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF----GPRS- 406 (559)
T ss_pred cceeEEecCCccc----eeeeecccceEE--eccccccCCCCCCCcchhhccchhhcccccccccceeeec----cCcc-
Confidence 5677777655544 777778888888 4322221111111111112234458999764 7788774 3455
Q ss_pred ccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 589 ~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
.+++|||+-|.|.||+-.+++.++.+.+-..-|+|+.-+|. -..|||.+-|..||||...+.+
T Consensus 407 ---EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~------~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 407 ---EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH------LPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ---ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC------CchhhccCCccceeeecCCccc
Confidence 89999999999999999999999999887779999987776 7799999999999999875543
No 188
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=118.95 Aligned_cols=150 Identities=21% Similarity=0.233 Sum_probs=113.7
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcc-ccC--------------CceeEEEEecCCcCEE
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL-KVN--------------SHVSRQYFLGHTGAVL 574 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~-d~~--------------t~~~~~~l~gH~~~V~ 574 (1288)
..|+|+.+++... ..++.+-.+|.+++++-.. ...++...+ -++ +..++..+.--++.|+
T Consensus 220 tsvT~ikWvpg~~---~~Fl~a~~sGnlyly~~~~--~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 220 SSVTCIKWVPGSD---SLFLVAHASGNLYLYDKEI--VCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred cceEEEEEEeCCC---ceEEEEEecCceEEeeccc--cccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 5788866655433 2366677899999864321 111111111 011 1122333322345677
Q ss_pred EEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEE
Q 000781 575 CLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1288)
Q Consensus 575 ~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lW 654 (1288)
..+| +||| ++||+.|.|+.+||+|..+.+++..++..-+...|++|+|| |++|++|++|--|.||
T Consensus 295 ~f~F-----S~DG----~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 295 EFAF-----SPDG----KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVW 359 (636)
T ss_pred ceeE-----cCCC----ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEE
Confidence 7777 5799 99999999999999999999999999888899999999999 9999999999999999
Q ss_pred ECCCceeEEEecCCCCCcEEEEEcC
Q 000781 655 SLETLRVERMFPGHPNYPAKVVWDC 679 (1288)
Q Consensus 655 dl~t~~~l~~l~gH~~~V~~V~~sp 679 (1288)
.+..++.+..-+||.+.|..|+|+|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999995
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.93 E-value=3.1e-09 Score=114.41 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=114.8
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.|.++|.+.+|+............ ..+.......|..+|+++.|.+. - ..=++|+.+..+..|.
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~-----~~kv~~~~ash~qpvlsldyas~---~------~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQ-----SSKVESPNASHKQPVLSLDYASS---C------DRGISGGADDKLVMYS 233 (323)
T ss_pred EEEeccCCeEEEEEccCCceeecccc-----ccccccchhhccCcceeeeechh---h------cCCcCCCccccceeee
Confidence 88999999999977653211111111 11344556689999999999642 1 2238899999999999
Q ss_pred CCC--CceE-E-EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCE
Q 000781 608 LGS--GNLI-T-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY 683 (1288)
Q Consensus 608 l~t--g~~l-~-~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~ 683 (1288)
+.. |.+. + ..+...-.|..+.+-|| ++.++|++.|+.||||+.++.+++..+.-|.+.|++++|+|+.+.
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 863 3322 1 22333456888999888 899999999999999999999999999999999999999999888
Q ss_pred EEEEecCCCcccCCCCeEEEEEC
Q 000781 684 IACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 684 L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
++.++. |+.|.+|++
T Consensus 308 mAaask--------D~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASK--------DARISLWKL 322 (323)
T ss_pred hhhccC--------CceEEeeec
Confidence 885443 589999986
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.91 E-value=5.6e-08 Score=105.40 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=95.9
Q ss_pred CCcCEEEEEEeecccCCCCCccCcE--EEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEV--LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~--L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs 646 (1288)
+.+.|.+++| +|+| +. +++|..+..|.+||++ ++.+..+ +...++.+.|+|+ |++++.++
T Consensus 58 ~~~~I~~~~W-----sP~g----~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~------G~~l~~~g 119 (194)
T PF08662_consen 58 KEGPIHDVAW-----SPNG----NEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPD------GRFLVLAG 119 (194)
T ss_pred CCCceEEEEE-----CcCC----CEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCC------CCEEEEEE
Confidence 3467999999 4677 54 4556678899999996 6666666 4578899999999 89999887
Q ss_pred CC---CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEE
Q 000781 647 ED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1288)
Q Consensus 647 ~D---gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l 715 (1288)
.+ |.+.+||.++.+.+..+. |. .++.++|+|+|++|+++... .....|+.++||+. +|+++...
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~--~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTS--PRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEec--cceeccccEEEEEe-cCeEeEec
Confidence 54 669999999999987775 43 57899999999999986543 12234689999998 47766553
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.9e-08 Score=112.08 Aligned_cols=193 Identities=18% Similarity=0.290 Sum_probs=139.1
Q ss_pred cccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCce
Q 000781 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1288)
Q Consensus 482 ~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~ 561 (1288)
-.++.+++++... ++....|+++...++.+.|+.+. +|..+.+++.||+|++|+.-.. ...
T Consensus 47 lSngsv~lyd~~t----g~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~-------------~e~ 107 (376)
T KOG1188|consen 47 LSNGSVRLYDKGT----GQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQ-------------AES 107 (376)
T ss_pred ecCCeEEEEeccc----hhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecc-------------hhh
Confidence 3445556555554 35778889999999999998876 7788999999999999664322 122
Q ss_pred eEEEEecCC-cCEEEEEEeecccCCCCCccCcEEEEEE----CCCcEEEEeCCCCce-EEE-EeccCcCEEEEEECCCCC
Q 000781 562 SRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCSIRIWDLGSGNL-ITV-MHHHVAPVRQIILSPPQT 634 (1288)
Q Consensus 562 ~~~~l~gH~-~~V~~L~~~p~~~SpdG~~~~~~L~SGs----~D~tI~vWDl~tg~~-l~~-~~~H~~~V~~l~~sp~~~ 634 (1288)
....+.+|. .+-.|++-+ .++ +++++|. .|-.|.+||++..+. ++. +..|.+-|+++.|.|..
T Consensus 108 a~~~~~~~~~~~f~~ld~n-----ck~----~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~- 177 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLN-----CKK----NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD- 177 (376)
T ss_pred hheeccCCCCCcceEeecc-----CcC----CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-
Confidence 344555666 456666652 122 6777775 466899999998765 555 45799999999999984
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCce---eEEEecCCCCCcEEEEEcCCC-CEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 635 EHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~DgsV~lWdl~t~~---~l~~l~gH~~~V~~V~~sp~~-~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
.+.++|||-||-|.|+|++... .+...-.|...|.++.|...+ +.|.|-.. +.+.++|+++.|.
T Consensus 178 ----pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH--------~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 178 ----PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH--------METFAIYELEDGS 245 (376)
T ss_pred ----CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc--------cCceeEEEccCCC
Confidence 4799999999999999997542 233333467789999998877 34555333 3799999999887
Q ss_pred EEEEE
Q 000781 711 RERVL 715 (1288)
Q Consensus 711 l~~~l 715 (1288)
.+..+
T Consensus 246 ~~~~~ 250 (376)
T KOG1188|consen 246 EETWL 250 (376)
T ss_pred hhhcc
Confidence 54433
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.8e-09 Score=122.60 Aligned_cols=168 Identities=16% Similarity=0.159 Sum_probs=127.4
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE-ecCCcCEEEEEEe
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAH 579 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~L~~~ 579 (1288)
+...+.||.+.|+|+.+.++..+ |++|+.|-.+.||+. -..++++.+ .||+..|.|+.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~l----L~SGSDD~r~ivWd~---------------~~~KllhsI~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGEL----LASGSDDTRLIVWDP---------------FEYKLLHSISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCE----EeecCCcceEEeecc---------------hhcceeeeeecccccceeEEeee
Confidence 34567899999999999888888 999999999999442 233344444 6999999999997
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCC----------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCC
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t----------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
|. ..+++++||..|+.|+++|+.. .+..+.+..|...|..++..|++ -+.|-+++.||
T Consensus 103 P~-------tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDG 170 (758)
T KOG1310|consen 103 PY-------TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDG 170 (758)
T ss_pred cc-------CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCc
Confidence 73 1358999999999999999984 23456688899999999999984 37999999999
Q ss_pred cEEEEECCCce-eEE------Ee-cCCCC--CcEEEEEcCCCC-EEEEEecCCCcccCCCCeEEEEECC
Q 000781 650 SVALASLETLR-VER------MF-PGHPN--YPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 650 sV~lWdl~t~~-~l~------~l-~gH~~--~V~~V~~sp~~~-~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
+++-+|+|... |-. .+ .-+.. ...++..+|... +|++|+. |--+++||.+
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs--------dpfarLYD~R 231 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS--------DPFARLYDRR 231 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC--------Cchhhhhhhh
Confidence 99999998731 111 11 11222 346899999775 5666443 3689999964
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.5e-08 Score=113.95 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=131.4
Q ss_pred EEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCccccccc
Q 000781 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1288)
Q Consensus 20 Tala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 99 (1288)
.+++|+.||..|+||+.||.+++|+..+ ..++.-...|.+.|.+|.| +
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----~~t~l~e~~~~~eV~DL~F---------------------------S 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----MLTILEEIAHHAEVKDLDF---------------------------S 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----chhhhhhHhhcCcccccee---------------------------C
Confidence 6899999999999999999999999875 5666677789999999965 8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccccccc
Q 000781 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSED 179 (1288)
Q Consensus 100 ~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~~~d 179 (1288)
+|+++|+|.+.| ...|||.++|.|+.+..--.-...-..+++...+.. -.+.|....
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~--------------------- 252 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQ--------------------- 252 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEec---------------------
Confidence 889999999999 999999999988766431100112233343332222 122222200
Q ss_pred ccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCC
Q 000781 180 KEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGN 259 (1288)
Q Consensus 180 ~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~ 259 (1288)
....+-..+++-+|+-. +++..... .-....|++|+|.- ++ ..++-++.+|.+-|.+...- .
T Consensus 253 --~~~~~v~~~~~~~w~~~--~~l~~~~~-~~~~~siSsl~VS~---dG---kf~AlGT~dGsVai~~~~~l------q- 314 (398)
T KOG0771|consen 253 --FPGGGVRLCDISLWSGS--NFLRLRKK-IKRFKSISSLAVSD---DG---KFLALGTMDGSVAIYDAKSL------Q- 314 (398)
T ss_pred --CCCCceeEEEeeeeccc--cccchhhh-hhccCcceeEEEcC---CC---cEEEEeccCCcEEEEEecee------e-
Confidence 00000112334444432 11111110 00123499999984 43 48888899999999887763 0
Q ss_pred cccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEee
Q 000781 260 GLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRL 305 (1288)
Q Consensus 260 ~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~ 305 (1288)
. .......|...|..+.|+||.+..+.++.+.. +..+
T Consensus 315 --------~-~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 315 --------R-LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred --------e-eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 0 11134677788899999999998888766544 4444
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.83 E-value=2.1e-08 Score=116.84 Aligned_cols=168 Identities=16% Similarity=0.238 Sum_probs=123.8
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++|..-|.+.+.+- .... +... .-....-.+..|+|+.|-| .+ +..++.+-.++.+.++|
T Consensus 188 llIGf~tGqvq~idp--~~~~--------~skl-fne~r~i~ktsvT~ikWvp-----g~---~~~Fl~a~~sGnlyly~ 248 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDP--INFE--------VSKL-FNEERLINKSSVTCIKWVP-----GS---DSLFLVAHASGNLYLYD 248 (636)
T ss_pred eEEeeccCceEEecc--hhhH--------HHHh-hhhcccccccceEEEEEEe-----CC---CceEEEEEecCceEEee
Confidence 788888999888442 2110 0000 0000001247899999964 22 46788888899999997
Q ss_pred CCC--------------C--------------ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc
Q 000781 608 LGS--------------G--------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1288)
Q Consensus 608 l~t--------------g--------------~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~ 659 (1288)
..- + .++..+.--.+.|+..+|+|| |+++|++|.||.+||+|..+.
T Consensus 249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt~ 322 (636)
T KOG2394|consen 249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD------GKYLATVSQDGFLRIFDFDTQ 322 (636)
T ss_pred ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC------CceEEEEecCceEEEeeccHH
Confidence 541 1 112223233568899999998 899999999999999999998
Q ss_pred eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeee
Q 000781 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 660 ~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
+.+..++.--+...||+|+|||+||++|+.| .-|.||.+..++.+..=+||.+-|..+.|=
T Consensus 323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--------DLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--------DLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHhhccceEEEEEcCCccEEEecCCc--------ceEEEEEeccceEEEeccccccceeeEeec
Confidence 8877776666788999999999999987665 799999999999999999999999877553
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=5.3e-08 Score=111.35 Aligned_cols=179 Identities=14% Similarity=0.101 Sum_probs=128.3
Q ss_pred EEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCc
Q 000781 513 SSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592 (1288)
Q Consensus 513 ts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~ 592 (1288)
.++++..+... +++|+.||.++||+|.. ...+.....|.+.|.+|.| +||| +
T Consensus 148 k~vaf~~~gs~----latgg~dg~lRv~~~Ps---------------~~t~l~e~~~~~eV~DL~F-----S~dg----k 199 (398)
T KOG0771|consen 148 KVVAFNGDGSK----LATGGTDGTLRVWEWPS---------------MLTILEEIAHHAEVKDLDF-----SPDG----K 199 (398)
T ss_pred eEEEEcCCCCE----eeeccccceEEEEecCc---------------chhhhhhHhhcCcccccee-----CCCC----c
Confidence 34455666565 99999999999987652 2245566789999999999 6799 9
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEe--ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce------eEEE
Q 000781 593 VLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR------VERM 664 (1288)
Q Consensus 593 ~L~SGs~D~tI~vWDl~tg~~l~~~~--~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~------~l~~ 664 (1288)
.|++-+.| ..+||+..+|.++.... ........+.|..++.- +.-.+++....-+.|+.||+...+ ..+.
T Consensus 200 ~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~ 277 (398)
T KOG0771|consen 200 FLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK 277 (398)
T ss_pred EEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhh
Confidence 99999999 99999999997665543 22234566777766210 001233344445677777764321 1122
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEE-eCCCCceEEeeeecC
Q 000781 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFDHFCKG 730 (1288)
Q Consensus 665 l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l-~GH~~~vi~~~~~~~ 730 (1288)
...+ ..|.+++.+++|++++.|+.| |.|-|++..+-++++.. +.|...|+.+.|+|+
T Consensus 278 ~~~~-~siSsl~VS~dGkf~AlGT~d--------GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 278 IKRF-KSISSLAVSDDGKFLALGTMD--------GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred hhcc-CcceeEEEcCCCcEEEEeccC--------CcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 2333 379999999999999987654 89999999998887665 589999999999874
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.80 E-value=3.6e-08 Score=114.44 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=111.7
Q ss_pred eecccCCCcEEEEEeeecCcccCCE--EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~--lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
.....|.+.+.| .+|+|++ |++.++||.|++|.- +|-...++.....+|.|++|.|
T Consensus 98 ~sv~AH~~A~~~------gRW~~dGtgLlt~GEDG~iKiWSr----------------sGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 98 RSISAHAAAISS------GRWSPDGAGLLTAGEDGVIKIWSR----------------SGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred hhhhhhhhhhhh------cccCCCCceeeeecCCceEEEEec----------------cchHHHHHhhcCceeEEEEECC
Confidence 445778899988 7777776 999999999999542 3333445555678999999954
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
++ ++.+.+.+.. +.|=-+.....+-+++.|.+-|.++.|+|. .+.++||+.|-..++||-. |+
T Consensus 156 -----~S---~~vl~c~g~h--~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------s~lI~sgGED~kfKvWD~~-G~ 218 (737)
T KOG1524|consen 156 -----NS---NSIVFCQGGH--ISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------SNIIASGGEDFRFKIWDAQ-GA 218 (737)
T ss_pred -----CC---CceEEecCCe--EEEeecccccceeEEeccCcEEEEeecCcc------ccceeecCCceeEEeeccc-Cc
Confidence 44 3566666544 444445555556688999999999999998 7899999999999999976 66
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEEEEec
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~tg~~ 689 (1288)
.+..-..|..+|++|+|+|+..| ++|+.
T Consensus 219 ~Lf~S~~~ey~ITSva~npd~~~-~v~S~ 246 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPEKDY-LLWSY 246 (737)
T ss_pred ccccCChhccceeeeeeccccce-eeeee
Confidence 77777778889999999999444 44443
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.79 E-value=1.3e-07 Score=116.02 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=132.5
Q ss_pred ccCccccccccCCCC--CCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 483 CQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~--~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
+.+.+-+||...... ...+...-..|...|+.+.++.+..- ..+++++.||.|..|+.+.......... -+....
T Consensus 263 y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~--~~f~s~ssDG~i~~W~~~~l~~P~e~~~-~~~~~~ 339 (555)
T KOG1587|consen 263 YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN--TEFFSLSSDGSICSWDTDMLSLPVEGLL-LESKKH 339 (555)
T ss_pred cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC--CceEEEecCCcEeeeeccccccchhhcc-cccccc
Confidence 344455555544332 22233333568888888777764332 4489999999999987654432100000 000000
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE---eCCCCc-----eEEEEeccCcCEEEEEECCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW---DLGSGN-----LITVMHHHVAPVRQIILSPP 632 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW---Dl~tg~-----~l~~~~~H~~~V~~l~~sp~ 632 (1288)
....+ .-...++++.|.|.. ...++.|+++|.|.-= +...+. .+..+..|.++|+++.++|=
T Consensus 340 -~~~~~-~~~~~~t~~~F~~~~--------p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 340 -KGQQS-SKAVGATSLKFEPTD--------PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred -ccccc-ccccceeeEeeccCC--------CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 00011 123568999997532 3789999999998773 333222 23466778999999999997
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECC-CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~-t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
. -..|.+++ |.+|+||+.. ...++..+..+...|++++|+|...-++ .+.|.||.+.+||+...
T Consensus 410 ~-----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF-------~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 410 Y-----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF-------ATVDGDGNLDIWDLLQD 474 (555)
T ss_pred c-----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE-------EEEcCCCceehhhhhcc
Confidence 2 23555555 9999999998 7788888888888899999999998777 35666899999999653
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.73 E-value=1.1e-08 Score=117.27 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=130.4
Q ss_pred cEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCcc
Q 000781 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1288)
Q Consensus 511 ~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~ 590 (1288)
.|..+.|+.+..| ++.+ ....++| ||.. |..++.++.| ..|..|.|-|-|
T Consensus 172 tv~Dv~~LHneq~----~AVA-QK~y~yv--YD~~--------------GtElHClk~~-~~v~rLeFLPyH-------- 221 (545)
T KOG1272|consen 172 TVRDVTFLHNEQF----FAVA-QKKYVYV--YDNN--------------GTELHCLKRH-IRVARLEFLPYH-------- 221 (545)
T ss_pred hhhhhhhhcchHH----HHhh-hhceEEE--ecCC--------------CcEEeehhhc-Cchhhhcccchh--------
Confidence 4555555655555 4544 4455666 5533 3357777766 678899997633
Q ss_pred CcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC
Q 000781 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1288)
Q Consensus 591 ~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~ 670 (1288)
-+|++++..|-++.-|+.+|+.+..|....+.+..+.-+|- ...+..|...|+|.+|+....+++..+..|.+
T Consensus 222 -fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------NaVih~GhsnGtVSlWSP~skePLvKiLcH~g 294 (545)
T KOG1272|consen 222 -FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG 294 (545)
T ss_pred -heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------cceEEEcCCCceEEecCCCCcchHHHHHhcCC
Confidence 58999999999999999999999999988999999998887 67899999999999999999999988999999
Q ss_pred CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 671 ~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
+|.+|+++++|.|++|.+. |..++|||++.-..+.++.
T Consensus 295 ~V~siAv~~~G~YMaTtG~--------Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATTGL--------DRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CcceEEECCCCcEEeeccc--------ccceeEeeeccccccceee
Confidence 9999999999999997554 4899999999866555544
No 199
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=4e-07 Score=108.15 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=125.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEe--cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEE
Q 000781 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1288)
Q Consensus 527 ~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~--gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~ 604 (1288)
+++.|...|+|.++. ...++....+. +|.+.|+++.++. +- ..|.|++.|+.+.
T Consensus 72 ~lvlgt~~g~v~~ys---------------~~~g~it~~~st~~h~~~v~~~~~~~-----~~----~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYS---------------VAGGEITAKLSTDKHYGNVNEILDAQ-----RL----GCIYSVGADLKVV 127 (541)
T ss_pred EEEeecCCccEEEEE---------------ecCCeEEEEEecCCCCCcceeeeccc-----cc----CceEecCCceeEE
Confidence 389999999998844 44566666665 7999999999842 22 6899999999999
Q ss_pred EEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCC----
Q 000781 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP---- 680 (1288)
Q Consensus 605 vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~---- 680 (1288)
+|+...++.++.+.+....+.+++++|| +..+++++ +.|++||+++++.+..|.||.++|+++.|.-.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sl~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 128 YILEKEKVIIRIWKEQKPLVSSLCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred EEecccceeeeeeccCCCccceEEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 9999999999999999999999999999 78888886 57999999999999999999999999999776
Q ss_pred -CCEEEEEecCCCcccCCCCeEEEEECCC----CcEEEEEeCCCCce
Q 000781 681 -RGYIACLCRDHSRTSDAVDVLFIWDVKT----GARERVLRGTASHS 722 (1288)
Q Consensus 681 -~~~L~tg~~D~sgssD~DgtV~VWDl~t----g~l~~~l~GH~~~v 722 (1288)
|.|+++ +.+.+.-+.+|-.+. +...+++.-..-++
T Consensus 200 ~G~~vLs-------sa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv 239 (541)
T KOG4547|consen 200 IGKYVLS-------SAAAERGITVWVVEKEDKKKSLSCSLTVPDIPV 239 (541)
T ss_pred ccceeee-------ccccccceeEEEEEcccccchhheeeccCCCCe
Confidence 778874 334456788886643 33445554443333
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=4.8e-07 Score=112.35 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=127.6
Q ss_pred cccccccCccccccccCCCCCCCcceecc---cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFV---HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~---~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~ 554 (1288)
+........+.+|+-.... ....|. .....|+.+.++.+...+ .+++|+.||.|+||+ .....
T Consensus 1079 i~~ad~r~~i~vwd~e~~~----~l~~F~n~~~~~t~Vs~l~liNe~D~a--LlLtas~dGvIRIwk--~y~~~------ 1144 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGR----LLNGFDNGAFPDTRVSDLELINEQDDA--LLLTASSDGVIRIWK--DYADK------ 1144 (1387)
T ss_pred eEEcCCcceEEEEecccCc----eeccccCCCCCCCccceeeeecccchh--heeeeccCceEEEec--ccccc------
Confidence 4444446778888887663 334443 234688888888776543 289999999999965 22111
Q ss_pred cccCCceeEEEE---ecC----CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec-cCcCEEE
Q 000781 555 LKVNSHVSRQYF---LGH----TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-HVAPVRQ 626 (1288)
Q Consensus 555 ~d~~t~~~~~~l---~gH----~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~-H~~~V~~ 626 (1288)
| ++.+.+... .++ .+.=.-+.|.. -. .+|+++|+-+.|+|||....+..+.+.. -...|++
T Consensus 1145 ~--~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ----~~-----G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1145 W--KKPELVTAWSSLSDQLPGARGTGLVVDWQQ----QS-----GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred c--CCceeEEeeccccccCccCCCCCeeeehhh----hC-----CeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence 0 112222211 111 11112234532 12 3566666689999999998887776543 3446777
Q ss_pred EEECCCCCCCCCCCEEEEEECCCcEEEEECCCce---eEEEecCCCCC--cEEEEEcCCCC-EEEEEecCCCcccCCCCe
Q 000781 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNY--PAKVVWDCPRG-YIACLCRDHSRTSDAVDV 700 (1288)
Q Consensus 627 l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~---~l~~l~gH~~~--V~~V~~sp~~~-~L~tg~~D~sgssD~Dgt 700 (1288)
+.-.-. .|+.|+.|..||+|++||.|... .+...+.|... |..+.+.+.|- .|++||.| |.
T Consensus 1214 LS~~~~-----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~--------G~ 1280 (1387)
T KOG1517|consen 1214 LSADLV-----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD--------GD 1280 (1387)
T ss_pred eccccc-----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC--------Ce
Confidence 655433 27999999999999999998643 46778889877 88999988664 48866554 89
Q ss_pred EEEEECCCC
Q 000781 701 LFIWDVKTG 709 (1288)
Q Consensus 701 V~VWDl~tg 709 (1288)
|++||++..
T Consensus 1281 I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1281 IQLLDLRMS 1289 (1387)
T ss_pred EEEEecccC
Confidence 999999974
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=118.12 Aligned_cols=141 Identities=22% Similarity=0.262 Sum_probs=116.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 527 ~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
.+++|+--|.|.+|++.. +.++. .+.||.+.+..+.+ +-|| .+++|.|+|+++|+|
T Consensus 147 ~i~~gsv~~~iivW~~~~--------------dn~p~-~l~GHeG~iF~i~~-----s~dg----~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHE--------------DNKPI-RLKGHEGSIFSIVT-----SLDG----RYIASVSDDRSIRLW 202 (967)
T ss_pred EEEeccccccEEEEeccc--------------cCCcc-eecccCCceEEEEE-----ccCC----cEEEEEecCcceeee
Confidence 388999999999987651 12223 68899999999999 5677 999999999999999
Q ss_pred eCCCCceEE-EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC-CcEEEEEcCCCCEE
Q 000781 607 DLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN-YPAKVVWDCPRGYI 684 (1288)
Q Consensus 607 Dl~tg~~l~-~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~-~V~~V~~sp~~~~L 684 (1288)
++.+.+... +..+|+..|..+.|.|. .+++++.|-+.++|+.+ +..+..+.+|.. .++.++..++...+
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999988665 66699999999999975 79999999999999765 445558888864 57899999988888
Q ss_pred EEEecCCCcccCCCCeEEEEECCC
Q 000781 685 ACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 685 ~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
+|++. |+.+++||+..
T Consensus 274 vT~g~--------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGN--------DSTLKLWDLNG 289 (967)
T ss_pred Eeecc--------Ccchhhhhhhc
Confidence 86544 58999999865
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=2.7e-05 Score=88.32 Aligned_cols=95 Identities=19% Similarity=0.320 Sum_probs=81.7
Q ss_pred CCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCc-EEEEeCCCCc
Q 000781 534 SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IRIWDLGSGN 612 (1288)
Q Consensus 534 DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~t-I~vWDl~tg~ 612 (1288)
.|+|.+++ ..+-+++..+..|.+.+-|++| +++| .+|||+|+.|+ |||+.+.+|+
T Consensus 152 ~GdV~l~d---------------~~nl~~v~~I~aH~~~lAalaf-----s~~G----~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 152 SGDVVLFD---------------TINLQPVNTINAHKGPLAALAF-----SPDG----TLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred CceEEEEE---------------cccceeeeEEEecCCceeEEEE-----CCCC----CEEEEeccCceEEEEEEcCCcc
Confidence 58999954 3455588899999999999999 5789 99999999998 5899999999
Q ss_pred eEEEEeccC--cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC
Q 000781 613 LITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1288)
Q Consensus 613 ~l~~~~~H~--~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t 658 (1288)
.+..|+--. -.|.+++|+|+ +++|++.|.-++|.++-+++
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~d------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPD------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCC------CCeEEEecCCCeEEEEEecc
Confidence 999987544 35789999999 88999999999999998864
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.70 E-value=5.1e-08 Score=113.25 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=126.9
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++..+.||.+.+.. +.++..+.+..|.++|.|-.| +||| .-|+|.++||.|++|.
T Consensus 78 ~~i~s~DGkf~il~----------------k~~rVE~sv~AH~~A~~~gRW-----~~dG----tgLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 78 LLICSNDGRFVILN----------------KSARVERSISAHAAAISSGRW-----SPDG----AGLLTAGEDGVIKIWS 132 (737)
T ss_pred EEEEcCCceEEEec----------------ccchhhhhhhhhhhhhhhccc-----CCCC----ceeeeecCCceEEEEe
Confidence 67778999998833 234456678899999999999 5788 8899999999999998
Q ss_pred CCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000781 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687 (1288)
Q Consensus 608 l~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg 687 (1288)
++|.+..++.....+|.|++|.|+. .+.+.+.+. .+.+=.+.....+...+.|.+-|.++.|++..+.+++|
T Consensus 133 -rsGMLRStl~Q~~~~v~c~~W~p~S-----~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 133 -RSGMLRSTVVQNEESIRCARWAPNS-----NSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred -ccchHHHHHhhcCceeEEEEECCCC-----CceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeec
Confidence 5676666677778899999999993 344444443 34444555555667788999999999999999999975
Q ss_pred ecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecC
Q 000781 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKG 730 (1288)
Q Consensus 688 ~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~ 730 (1288)
+. |-..+|||.. |+.+.+-..|.-+++.+.|.++
T Consensus 205 GE--------D~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 205 GE--------DFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred CC--------ceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 54 4899999974 7777777888888988888875
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=2.2e-07 Score=104.31 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=130.9
Q ss_pred eecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEec-CCcCEEEEEEeec
Q 000781 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRM 581 (1288)
Q Consensus 503 ~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~g-H~~~V~~L~~~p~ 581 (1288)
..+.+|.+.|+++.|..+..| |++|+.|-.+++|..+.+.- -++.+++..... |...|.||+|.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~----L~SGGDD~~~~~W~~de~~~---------~k~~KPI~~~~~~H~SNIF~L~F~-- 114 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF----LASGGDDMHGRVWNVDELMV---------RKTPKPIGVMEHPHRSNIFSLEFD-- 114 (609)
T ss_pred hhhhhhccccceeeeccCCeE----EeecCCcceeeeechHHHHh---------hcCCCCceeccCccccceEEEEEc--
Confidence 345789999999999999888 99999999999977654321 234556666543 45889999994
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec--cCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~--H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~ 659 (1288)
.. +..+.||+.+++|..-|+++.+.+.++.. ..+.|..+..+|. .+.|++.+.|+.|.+||.+..
T Consensus 115 ---~~----N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~------DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 115 ---LE----NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT------DNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred ---cC----CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC------CceEEEEecCceEEEEeccCC
Confidence 12 37999999999999999999998888843 2358999999998 789999999999999999876
Q ss_pred e-eE--EEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 660 R-VE--RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 660 ~-~l--~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
. .+ ..+.......+.+.|+|....|+.. ...-+-+.+||++..+
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~-------~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPETPALILV-------NSETGGPNVFDRRMQA 228 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCCceeEEe-------ccccCCCCceeecccc
Confidence 5 22 1122223356789999988766532 1112678999997643
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.67 E-value=1.2e-06 Score=103.86 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=119.0
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE---ecCCcCEEEEEEeecccCCC
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAVLCLAAHRMVGTAK 586 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l---~gH~~~V~~L~~~p~~~Spd 586 (1288)
..|.++.+..+..+ ++.|-.||+|.+..- ++++...+ .|.+.+|++++|+|..+ .
T Consensus 133 ~R~~~CsWtnDGqy----lalG~~nGTIsiRNk----------------~gEek~~I~Rpgg~Nspiwsi~~~p~sg--~ 190 (1081)
T KOG1538|consen 133 SRIICCSWTNDGQY----LALGMFNGTISIRNK----------------NGEEKVKIERPGGSNSPIWSICWNPSSG--E 190 (1081)
T ss_pred eeEEEeeecCCCcE----EEEeccCceEEeecC----------------CCCcceEEeCCCCCCCCceEEEecCCCC--C
Confidence 46777777788887 999999999999421 22222223 35778999999987532 3
Q ss_pred CCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec
Q 000781 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 587 G~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
| .+..++......|+.++.+. |+.+.+-+.-.-.-.|+.+.|+ |.+++-|+.|+.++++. |.|-.+.++.
T Consensus 191 G--~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N------GEy~LiGGsdk~L~~fT-R~GvrLGTvg 260 (1081)
T KOG1538|consen 191 G--RNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTN------GEYILLGGSDKQLSLFT-RDGVRLGTVG 260 (1081)
T ss_pred C--ccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccC------CcEEEEccCCCceEEEe-ecCeEEeecc
Confidence 3 35688888888898888874 5555432222233468888888 89999999999999996 4566666666
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 667 gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
.....|+.|+.+|++++.+.||.| |+|-.+++-.
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqD--------GTiACyNl~f 294 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQD--------GTIACYNLIF 294 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEcc--------CeeehhhhHH
Confidence 666799999999999999999986 8999998743
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=7.7e-06 Score=101.09 Aligned_cols=84 Identities=29% Similarity=0.414 Sum_probs=66.8
Q ss_pred CCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccccccc
Q 000781 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1288)
Q Consensus 12 ~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~ 91 (1288)
..-++..++|.+++|.++++|+|-.||+|.+|.=...++. ....+++-=|..+|++++|
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-~~t~t~lHWH~~~V~~L~f-------------------- 259 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD-SETCTLLHWHHDEVNSLSF-------------------- 259 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc-cccceEEEecccccceeEE--------------------
Confidence 3345555899999999999999999999999986521111 1223345558999999966
Q ss_pred CcccccccCCCCEEEEEeCCCeEEEEECCCCe
Q 000781 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGH 123 (1288)
Q Consensus 92 ~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~ 123 (1288)
+.+|.+|.||+..|.+.+|.+.+++
T Consensus 260 -------S~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 260 -------SSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred -------ecCCceEeecccceEEEEEeecCCC
Confidence 6779999999999999999999988
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.60 E-value=5.9e-07 Score=99.66 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=123.8
Q ss_pred CCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCC
Q 000781 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1288)
Q Consensus 509 ~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~ 588 (1288)
...|+|-++-.+... ++.+..+.++.|+...... -.+..+++..|...|++++|. |.+
T Consensus 10 ~~pitchAwn~drt~----iAv~~~~~evhiy~~~~~~------------~w~~~htls~Hd~~vtgvdWa-----p~s- 67 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQ----IAVSPNNHEVHIYSMLGAD------------LWEPAHTLSEHDKIVTGVDWA-----PKS- 67 (361)
T ss_pred cCceeeeeecCCCce----EEeccCCceEEEEEecCCC------------CceeceehhhhCcceeEEeec-----CCC-
Confidence 357888666555554 8888889999997654211 134788999999999999995 555
Q ss_pred ccCcEEEEEECCCcEEEEeC-CCC--ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeE---
Q 000781 589 SFNEVLVSGSMDCSIRIWDL-GSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE--- 662 (1288)
Q Consensus 589 ~~~~~L~SGs~D~tI~vWDl-~tg--~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l--- 662 (1288)
+.|++|+.|..-++|.. ..+ ++.-.+..|...++++.|+|. ++.|+.||.-+.|.||-++...--
T Consensus 68 ---nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 68 ---NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------ENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred ---CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc------CceEEeccCccEEEEEEEecccceehh
Confidence 88999999999999998 433 355567778999999999999 789999999999999988754321
Q ss_pred -EEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 663 -RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 663 -~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
+.-..+.+.|+++.|+|++-+|+.||.| +..||+..
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaGs~D--------~k~rVfSa 175 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTD--------GKCRVFSA 175 (361)
T ss_pred hhhCCccccceeeeeccCCcceecccccC--------cceeEEEE
Confidence 1223456788999999999999876543 89999864
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=7.1e-07 Score=111.58 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=111.3
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE-EecCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPGHPN 670 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~-~l~gH~~ 670 (1288)
-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.++-+ |.+++|+|+|+++|+|++++.+... +.-||+.
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC------CcEEEEEecCcceeeeecccccccCcccccccc
Confidence 68999999999999999844433468899999999999998 8999999999999999999998876 7779999
Q ss_pred CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCC
Q 000781 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1288)
Q Consensus 671 ~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~ 750 (1288)
+|+.++|.|. ++++++. |.+.++|+.. ++.+.++.+|...-+--...+......+++-
T Consensus 220 Rvw~~~~~~n--~i~t~ge--------dctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g----------- 277 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGE--------DCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG----------- 277 (967)
T ss_pred eeEEEEeccc--eeEEecc--------ceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-----------
Confidence 9999999998 8887655 4899999764 5555588888766554323332222222221
Q ss_pred ceeeccCCcEEEEeCC
Q 000781 751 LLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 751 l~~~~~D~tvr~w~~~ 766 (1288)
-|+++|.|++.
T Consensus 278 -----~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 278 -----NDSTLKLWDLN 288 (967)
T ss_pred -----cCcchhhhhhh
Confidence 38999999864
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=2.1e-06 Score=96.99 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=108.7
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEe---cCCcCEEEEEEeecccCCCCCccCcEEEE-EE-CCCc
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL---GHTGAVLCLAAHRMVGTAKGWSFNEVLVS-GS-MDCS 602 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~---gH~~~V~~L~~~p~~~SpdG~~~~~~L~S-Gs-~D~t 602 (1288)
|+.. -.+.|+|++ +++-+.++++. .|...+.++.++ .++ .+++- ++ .-|.
T Consensus 100 LvV~-Lee~IyIyd---------------I~~MklLhTI~t~~~n~~gl~AlS~n-----~~n----~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 100 LVVC-LEESIYIYD---------------IKDMKLLHTIETTPPNPKGLCALSPN-----NAN----CYLAYPGSTTSGD 154 (391)
T ss_pred EEEE-EcccEEEEe---------------cccceeehhhhccCCCccceEeeccC-----CCC----ceEEecCCCCCce
Confidence 4544 344588854 45555666664 344556666553 222 45543 33 3478
Q ss_pred EEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcE-EEEECCCceeEEEecCCCC--CcEEEEEcC
Q 000781 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV-ALASLETLRVERMFPGHPN--YPAKVVWDC 679 (1288)
Q Consensus 603 I~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV-~lWdl~t~~~l~~l~gH~~--~V~~V~~sp 679 (1288)
|.+||+.+-+....+..|.+++-+++|+|+ |.++|++|+-|+| ||+++.+|+.+..|+.-.. .|++++|+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 999999999999999999999999999999 8999999999875 7999999999999975443 467999999
Q ss_pred CCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 680 ~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
++++|.+. ++ -++|+|+.+++-.
T Consensus 229 ds~~L~~s-------S~-TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 229 DSQFLAAS-------SN-TETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEe-------cC-CCeEEEEEecccc
Confidence 99999853 33 2799999997644
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=4.6e-06 Score=101.68 Aligned_cols=158 Identities=9% Similarity=0.105 Sum_probs=106.8
Q ss_pred EEEEE-cCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEE-EEECCCcEEE
Q 000781 528 IVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRI 605 (1288)
Q Consensus 528 lv~Gs-~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~-SGs~D~tI~v 605 (1288)
++++. .+|.+.+|.++ ..+++ ...+..|...+....| +||| +.|+ ++..++..+|
T Consensus 262 La~~~~~~g~~~Iy~~d-------------~~~~~-~~~lt~~~~~~~~~~w-----SpDG----~~i~f~s~~~g~~~I 318 (429)
T PRK01742 262 LAFASSKDGVLNIYVMG-------------ANGGT-PSQLTSGAGNNTEPSW-----SPDG----QSILFTSDRSGSPQV 318 (429)
T ss_pred EEEEEecCCcEEEEEEE-------------CCCCC-eEeeccCCCCcCCEEE-----CCCC----CEEEEEECCCCCceE
Confidence 66654 68888887766 22332 3556677788889999 5788 6555 4556788899
Q ss_pred EeCCCC-ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEE
Q 000781 606 WDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1288)
Q Consensus 606 WDl~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L 684 (1288)
|++... .....+ .+.+ ....|+|+ |+.++.++.|+ +.+||+.+++.......+ ....+.|+|+|++|
T Consensus 319 ~~~~~~~~~~~~l-~~~~--~~~~~SpD------G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i 386 (429)
T PRK01742 319 YRMSASGGGASLV-GGRG--YSAQISAD------GKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMI 386 (429)
T ss_pred EEEECCCCCeEEe-cCCC--CCccCCCC------CCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEE
Confidence 987532 222333 4444 45778998 88888888776 455999998765433332 33568899999999
Q ss_pred EEEecCCCcccCCCCeEEEEEC--CCCcEEEEEeCCCCceEEeeee
Q 000781 685 ACLCRDHSRTSDAVDVLFIWDV--KTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 685 ~tg~~D~sgssD~DgtV~VWDl--~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
+.++.+ +.+++|++ .+|...+.+.+|.+.+....|+
T Consensus 387 ~~~s~~--------g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 387 IYSSTQ--------GLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EEEEcC--------CCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 975433 56677765 3688889998888766544443
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.58 E-value=3.3e-06 Score=106.77 Aligned_cols=236 Identities=16% Similarity=0.104 Sum_probs=149.9
Q ss_pred CCCCcceecccCCCcEEEEEeeecC-cccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEE
Q 000781 497 QAGDGRDDFVHKEKIVSSSMVISES-FYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1288)
Q Consensus 497 ~~~~~~~~~~~h~~~Vts~~~is~~-~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~ 575 (1288)
+.|.++..+..|...|..++..+.. .+ +++|+.||+|++|+...... +..+.+...++.--.+++.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~----FvsgS~DGtVKvW~~~k~~~--------~~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSL----FVSGSDDGTVKVWNLRKLEG--------EGGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCce----EEEecCCceEEEeeehhhhc--------CcceeeeeEEEeccCCceEE
Confidence 4456777778899999887776665 66 99999999999977543221 11222344444445678888
Q ss_pred EEEeecccCCCCCccCcEEEEEECCCcEEEEeCCC--Cc-----e-----------E---E-------------------
Q 000781 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GN-----L-----------I---T------------------- 615 (1288)
Q Consensus 576 L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t--g~-----~-----------l---~------------------- 615 (1288)
+... +.| +.+|.|+.||.|++.++.. .+ + + +
T Consensus 1104 vt~~-----~~~----~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1104 VTMC-----GNG----DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred EEec-----cCC----CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 8875 345 7888889999999998764 10 0 0 0
Q ss_pred ---------------EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec-CCCCCcEEEEEcC
Q 000781 616 ---------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDC 679 (1288)
Q Consensus 616 ---------------~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~-gH~~~V~~V~~sp 679 (1288)
++....|.|++++.+|. ++.++.|..-|.+.+||+|-+.++.... ++..+++.+..+|
T Consensus 1175 iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eEEecchhhhhHHhhhcCccccceeEEEecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 00112467888888887 7899999999999999999888876553 3346788777776
Q ss_pred CC---CEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCc---cceeeecceeeCcccccCCcee
Q 000781 680 PR---GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI---SMNSISGSVLNGNTSVSSLLLP 753 (1288)
Q Consensus 680 ~~---~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~---~~~~~sgsi~~w~~~~s~~l~~ 753 (1288)
.. ...++++. + ..+-|.+|++.+|.+-+++-.-........+.+.. .+....|- ..+--....-++.
T Consensus 1249 ~~~~~S~~vs~~~-----~-~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~-~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGS-----S-SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGI-SCGVCEKNGFLLT 1321 (1431)
T ss_pred cCCCCceEEEecc-----c-CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccce-eeecccCCceeee
Confidence 44 45665432 1 24789999999998888776553333333333321 01111111 0000111122333
Q ss_pred eccCCcEEEEeCC
Q 000781 754 IHEDGTFRQSQIQ 766 (1288)
Q Consensus 754 ~~~D~tvr~w~~~ 766 (1288)
-..|..||.||..
T Consensus 1322 ggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPT 1334 (1431)
T ss_pred cCCccceeeccCC
Confidence 3459999999853
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.57 E-value=5.6e-08 Score=111.68 Aligned_cols=175 Identities=16% Similarity=0.200 Sum_probs=132.1
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
..|..+.|++..-. |++++..|-+... |+.+|+.+..+..-.+++..+.-+|.
T Consensus 210 ~~v~rLeFLPyHfL----L~~~~~~G~L~Y~---------------DVS~GklVa~~~t~~G~~~vm~qNP~-------- 262 (545)
T KOG1272|consen 210 IRVARLEFLPYHFL----LVAASEAGFLKYQ---------------DVSTGKLVASIRTGAGRTDVMKQNPY-------- 262 (545)
T ss_pred Cchhhhcccchhhe----eeecccCCceEEE---------------eechhhhhHHHHccCCccchhhcCCc--------
Confidence 35666566665554 7888888877763 36688888888877888888887662
Q ss_pred cCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCC
Q 000781 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~ 669 (1288)
+-.+-.|...|+|-+|.....+++..+..|.++|.+|++.+. |.+++|.+.|+.++|||+|....++++.. .
T Consensus 263 -NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 263 -NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred -cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeeccccccceeec-C
Confidence 258999999999999999999999999999999999999999 89999999999999999999887776654 3
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE-CCC--CcEEEEEeCC--CCceEEeeeec
Q 000781 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKT--GARERVLRGT--ASHSMFDHFCK 729 (1288)
Q Consensus 670 ~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD-l~t--g~l~~~l~GH--~~~vi~~~~~~ 729 (1288)
.+...+.++..| .|++ +.+ ..|.||. .-. +.....+.-| .+.|..+.||+
T Consensus 335 ~~a~~ls~Sqkg-lLA~------~~G---~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 335 HPASNLSLSQKG-LLAL------SYG---DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred CCcccccccccc-ceee------ecC---CeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 466788888554 4554 233 3899993 322 2222223233 24777788987
No 213
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.57 E-value=2.6e-06 Score=101.32 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=110.8
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEe--ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~--~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~ 669 (1288)
..++-|-.-|.|.++++..|+...++. .|-++|+++.++.+ -.||-|++.|..+..|+..+++.++.+.+..
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccCC
Confidence 578889999999999999999888886 59999999999877 6899999999999999999999999999888
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeee
Q 000781 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 670 ~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
.-+.+++.+||+..|++++ ++|++||+++++.+++++||.++|-++.|-
T Consensus 145 ~~~~sl~is~D~~~l~~as----------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS----------RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CccceEEEcCCCCEEEecc----------ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 8899999999999999754 699999999999999999999999888665
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.53 E-value=2.9e-06 Score=107.30 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=112.9
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-------ceEEEEeccCcCEEEEEECC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSP 631 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-------~~l~~~~~H~~~V~~l~~sp 631 (1288)
.|..+..|..|...|..++.++ +++ .+++|||.||+||+||...- +...++.--.+.+.++.+.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~----~~~----s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSS----EHT----SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred cceEeehhhhccccccceeecC----CCC----ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 5778889999999999999873 555 89999999999999998631 23344444577899999998
Q ss_pred CCCCCCCCCEEEEEECCCcEEEEECCCc-------------------eeEEE----------------------------
Q 000781 632 PQTEHPWSDCFLSVGEDFSVALASLETL-------------------RVERM---------------------------- 664 (1288)
Q Consensus 632 ~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-------------------~~l~~---------------------------- 664 (1288)
. ++.+|.++.||.|++.++.-. ..+..
T Consensus 1109 ~------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1109 N------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred C------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 8 889999999999999987641 00000
Q ss_pred --------ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe-CCCCceEEeeeec
Q 000781 665 --------FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFDHFCK 729 (1288)
Q Consensus 665 --------l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~-GH~~~vi~~~~~~ 729 (1288)
+.-..+.|++++.+|.+.+++.|... |.+-+||+|-+.++.... +|...+.-+..|+
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~--------G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR--------GQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEecCC--------ceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 00112468999999999999986432 899999999999987754 5667776665554
No 215
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.52 E-value=0.00014 Score=85.28 Aligned_cols=152 Identities=11% Similarity=0.149 Sum_probs=92.9
Q ss_pred EEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC-CCcEEEEe
Q 000781 529 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWD 607 (1288)
Q Consensus 529 v~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~-D~tI~vWD 607 (1288)
++...++.|.+++++..+... ........ +.. ......+.| +||| ++++++.. +++|.+||
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~-------~~~~~~~~-~~~-g~~p~~~~~-----~pdg----~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLV-------AQEPAEVT-TVE-GAGPRHMVF-----HPNQ----QYAYCVNELNSSVDVWQ 203 (330)
T ss_pred EeeCCCCEEEEEEECCCCccc-------ccCCCcee-cCC-CCCCceEEE-----CCCC----CEEEEEecCCCEEEEEE
Confidence 455567899997776321100 00000011 111 133557888 4688 87777765 99999999
Q ss_pred CCC--Cc--eEEEEecc------CcCEEEEEECCCCCCCCCCCEEEEEE-CCCcEEEEECCCceeEEEecCCC---CCcE
Q 000781 608 LGS--GN--LITVMHHH------VAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERMFPGHP---NYPA 673 (1288)
Q Consensus 608 l~t--g~--~l~~~~~H------~~~V~~l~~sp~~~~~~~g~~l~Sgs-~DgsV~lWdl~t~~~l~~l~gH~---~~V~ 673 (1288)
+.. ++ .+..+..+ ......+.++|+ ++++.++. .+++|.+|+++.......+.+|. ..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd------g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~ 277 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD------GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPR 277 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC------CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCC
Confidence 973 33 34444322 112346889998 77777764 48999999996543222222221 2566
Q ss_pred EEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC--CCcE
Q 000781 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK--TGAR 711 (1288)
Q Consensus 674 ~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~--tg~l 711 (1288)
.+.++|+|++|++++.. +++|.||+++ +|.+
T Consensus 278 ~~~~~~dg~~l~va~~~-------~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 278 GFNIDHSGKYLIAAGQK-------SHHISVYEIDGETGLL 310 (330)
T ss_pred ceEECCCCCEEEEEEcc-------CCcEEEEEEcCCCCcE
Confidence 89999999999986542 5899999874 5554
No 216
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=8.2e-05 Score=90.53 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC----------CCcEEEEECCCcee
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE----------DFSVALASLETLRV 661 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~----------DgsV~lWdl~t~~~ 661 (1288)
.+++.|...|+|.+.|+.++.....|..|++.|.++.|.-. ..++|-+. -+.+.+-|+++|..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~-------sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGN-------SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccc-------eeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 58899999999999999999999999999999999999754 34554432 34567889999865
Q ss_pred E--EEecC-CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 662 E--RMFPG-HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 662 l--~~l~g-H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
. +.+++ ...+|+.+..+..+.||+....| .-+-+||+++-.+++
T Consensus 511 k~fR~l~~~despI~~irvS~~~~yLai~Fr~--------~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 511 KRFRGLQKPDESPIRAIRVSSSGRYLAILFRR--------EPLEIWDLKTLRMLR 557 (1062)
T ss_pred cccccCCCCCcCcceeeeecccCceEEEEecc--------cchHHHhhccchHHH
Confidence 3 33333 34689999999999999988776 688999998766543
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.46 E-value=8.5e-06 Score=88.47 Aligned_cols=137 Identities=14% Similarity=0.200 Sum_probs=90.4
Q ss_pred EEEEeCC-CCceEEEEec-cCcCEEEEEECCCCCCCCCCCEEEE--EECCCcEEEEECCCceeEEEecCCCCCcEEEEEc
Q 000781 603 IRIWDLG-SGNLITVMHH-HVAPVRQIILSPPQTEHPWSDCFLS--VGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1288)
Q Consensus 603 I~vWDl~-tg~~l~~~~~-H~~~V~~l~~sp~~~~~~~g~~l~S--gs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~s 678 (1288)
..+|.++ .+.....+.. ..++|.+++|+|+ ++.|+. |..++.|.+||++ ++.+..+. ...++.|.|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPN------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcC------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 4444442 2233444433 4568999999999 676544 4567899999997 67777775 3578899999
Q ss_pred CCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCC
Q 000781 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1288)
Q Consensus 679 p~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~ 758 (1288)
|+|++|++++.+ +..|.|.+||.++.+.+.+.... .++.+.++++ |..+.. ..+.+ ..-.|+
T Consensus 110 P~G~~l~~~g~~-----n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPd-------Gr~~~t--a~t~~--r~~~dn 171 (194)
T PF08662_consen 110 PDGRFLVLAGFG-----NLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPD-------GRYLAT--ATTSP--RLRVDN 171 (194)
T ss_pred CCCCEEEEEEcc-----CCCcEEEEEECCCCEEeeccccC--cEEEEEEcCC-------CCEEEE--EEecc--ceeccc
Confidence 999999987643 22378999999998888776533 2455567653 321110 01111 222399
Q ss_pred cEEEEeCC
Q 000781 759 TFRQSQIQ 766 (1288)
Q Consensus 759 tvr~w~~~ 766 (1288)
.+++|+..
T Consensus 172 g~~Iw~~~ 179 (194)
T PF08662_consen 172 GFKIWSFQ 179 (194)
T ss_pred cEEEEEec
Confidence 99999863
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.43 E-value=0.0012 Score=79.00 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=61.7
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEE----ECCCcEEEEeCCCCceEEEEeccC-cCEEEEEECC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG----SMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSP 631 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SG----s~D~tI~vWDl~tg~~l~~~~~H~-~~V~~l~~sp 631 (1288)
..+.+.++.+....+. ..+..| ||+ +++... ....+|.++|.++.+.+.++.... ..+..+.|++
T Consensus 256 ~~~wkvv~~I~~~G~g-lFi~th-----P~s----~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGG-LFIKTH-----PDS----RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp TTBTSEEEEEE-SSSS---EE-------TT-----SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred hhcCeEEEEEECCCCc-ceeecC-----CCC----ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 4455677777776666 566664 577 777666 556899999999998887775433 3589999999
Q ss_pred CCCCCCCCC-EEEEEECCC-cEEEEECCCceeEEEec
Q 000781 632 PQTEHPWSD-CFLSVGEDF-SVALASLETLRVERMFP 666 (1288)
Q Consensus 632 ~~~~~~~g~-~l~Sgs~Dg-sV~lWdl~t~~~l~~l~ 666 (1288)
+ |. ..+|.-.++ .|.+||..+.+.+..++
T Consensus 326 d------G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 326 D------GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T------SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred C------CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9 55 455555544 89999999999988887
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=8.9e-06 Score=92.62 Aligned_cols=167 Identities=13% Similarity=0.082 Sum_probs=122.5
Q ss_pred ecCcccCCEEEEEEcC--CcEEEEEecccccCCCCCCccccCCceeEEEEecC--CcCEEEEEEeecccCCCCCccCcEE
Q 000781 519 SESFYAPYAIVYGFFS--GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH--TGAVLCLAAHRMVGTAKGWSFNEVL 594 (1288)
Q Consensus 519 s~~~~~p~~lv~Gs~D--G~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH--~~~V~~L~~~p~~~SpdG~~~~~~L 594 (1288)
......|+-+++|+.. ..+.+|+.... ...|..++-.. -.| +- .-.++++.|-| + .....|
T Consensus 155 r~~~~~p~Iva~GGke~~n~lkiwdle~~------~qiw~aKNvpn-D~L-~LrVPvW~tdi~Fl~-----g--~~~~~f 219 (412)
T KOG3881|consen 155 RQTDTDPYIVATGGKENINELKIWDLEQS------KQIWSAKNVPN-DRL-GLRVPVWITDIRFLE-----G--SPNYKF 219 (412)
T ss_pred ccCCCCCceEecCchhcccceeeeecccc------eeeeeccCCCC-ccc-cceeeeeeccceecC-----C--CCCceE
Confidence 3344556667888888 67777553311 11121111000 000 11 12345667743 2 113789
Q ss_pred EEEECCCcEEEEeCCCCc-eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE-ecCCCCCc
Q 000781 595 VSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYP 672 (1288)
Q Consensus 595 ~SGs~D~tI~vWDl~tg~-~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~-l~gH~~~V 672 (1288)
+++..-+.+|+||.+.++ ++..|..-..+|+++...|. ++.+.+|..-+.+..+|++.++.... +.|-.+.|
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecCC------CcEEEEecccchhheecccCceeeccccCCccCCc
Confidence 999999999999998765 67888888899999999999 89999999999999999999998866 88889999
Q ss_pred EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 673 ~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
++|..+|...+|++++.| ..|||+|++|.+++..
T Consensus 294 rsih~hp~~~~las~GLD--------RyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLD--------RYVRIHDIKTRKLLHK 327 (412)
T ss_pred ceEEEcCCCceEEeeccc--------eeEEEeecccchhhhh
Confidence 999999999999976654 8999999999776543
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=9.5e-06 Score=90.33 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=118.2
Q ss_pred CccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEE
Q 000781 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1288)
Q Consensus 485 s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~ 564 (1288)
+.+-+||.....+...+ . -...|.+ ..+.++.++.. -...|+|+.|... .+ .++
T Consensus 75 NkviIWDD~k~~~i~el--~---f~~~I~~------V~l~r~riVvv-l~~~I~VytF~~n-----------~k---~l~ 128 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL--S---FNSEIKA------VKLRRDRIVVV-LENKIYVYTFPDN-----------PK---LLH 128 (346)
T ss_pred ceEEEEecccCcEEEEE--E---eccceee------EEEcCCeEEEE-ecCeEEEEEcCCC-----------hh---hee
Confidence 34557875544332211 1 2245655 44555556655 5678999777521 22 233
Q ss_pred EEecC--CcCEEEEEEeecccCCCCCccCcEEE-EEECCCcEEEEeCCCCce--EEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 565 YFLGH--TGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 565 ~l~gH--~~~V~~L~~~p~~~SpdG~~~~~~L~-SGs~D~tI~vWDl~tg~~--l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
.+.-- ...+.++. | ..+ ..+|| -|-.-|.|+|-|+...+. ...+..|.+.|.|++.+-+ |
T Consensus 129 ~~et~~NPkGlC~~~--~---~~~----k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------G 193 (346)
T KOG2111|consen 129 VIETRSNPKGLCSLC--P---TSN----KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------G 193 (346)
T ss_pred eeecccCCCceEeec--C---CCC----ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------c
Confidence 33211 22233332 2 111 24444 355668999999986654 4678899999999999998 8
Q ss_pred CEEEEEECCCc-EEEEECCCceeEEEecCCC--CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 640 DCFLSVGEDFS-VALASLETLRVERMFPGHP--NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 640 ~~l~Sgs~Dgs-V~lWdl~t~~~l~~l~gH~--~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
..+||+|..|| |||||.++|..++.++.-. ..|++++|+|+..+|++ ++|. ||++|+.++..
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav-------sSdK-gTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV-------SSDK-GTLHIFSLRDT 258 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-------EcCC-CeEEEEEeecC
Confidence 99999999987 5899999999999986432 46899999999999995 5564 99999998753
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.38 E-value=2.9e-06 Score=94.35 Aligned_cols=171 Identities=13% Similarity=0.030 Sum_probs=128.9
Q ss_pred CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEe
Q 000781 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1288)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~ 579 (1288)
+...+++.|...|+.+.+.+.... |+++++|..-++|..-. -.+.++.-.|..|+.+++|+.|+
T Consensus 46 ~~~htls~Hd~~vtgvdWap~snr----Ivtcs~drnayVw~~~~------------~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKSNR----IVTCSHDRNAYVWTQPS------------GGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred eeceehhhhCcceeEEeecCCCCc----eeEccCCCCccccccCC------------CCeeccceeEEEeccceeeEeec
Confidence 455778899999999666665555 99999999999965421 11334667788899999999994
Q ss_pred ecccCCCCCccCcEEEEEECCCcEEEEeCCCCce----EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL----ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 580 p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~----l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
|.+ +.+++||.-+.|.||-++...- .+.-+-+...|+++.|+|+ +-+++.||.|+..++++
T Consensus 110 -----P~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn------nVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 110 -----PKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN------NVLLAAGSTDGKCRVFS 174 (361)
T ss_pred -----CcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC------cceecccccCcceeEEE
Confidence 566 8999999999999998875431 2233446788999999998 67999999999999996
Q ss_pred C-----CC-------------ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 656 L-----ET-------------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 656 l-----~t-------------~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
. ++ |+.+..+....+.|..+.|+|.|..|+-.+. |.++.+=|....
T Consensus 175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H--------ds~v~~~da~~p 238 (361)
T KOG1523|consen 175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH--------DSTVSFVDAAGP 238 (361)
T ss_pred EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--------CCceEEeecCCC
Confidence 3 21 1333444445578999999999999986443 378888876543
No 222
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=7.6e-05 Score=90.81 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=76.7
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEE----------
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG---------- 597 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SG---------- 597 (1288)
++.|..+|+|-+++ +.++.....+.-|+..|.++.|- | ...|+|.
T Consensus 440 vAvGT~sGTV~vvd---------------vst~~v~~~fsvht~~VkgleW~-------g---~sslvSfsys~~n~~sg 494 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVD---------------VSTNAVAASFSVHTSLVKGLEWL-------G---NSSLVSFSYSHVNSASG 494 (1062)
T ss_pred EEeecCCceEEEEE---------------ecchhhhhhhcccccceeeeeec-------c---ceeEEEeeecccccccc
Confidence 88999999999955 44666777888899999999983 1 1334443
Q ss_pred ECCCcEEEEeCCCCceEEEEe----ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 598 SMDCSIRIWDLGSGNLITVMH----HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 598 s~D~tI~vWDl~tg~~l~~~~----~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
+.-+.+.+=|+++|... .|+ .-..+|+.+..+.. +++++-.-.|.-+-+||+++.++
T Consensus 495 ~vrN~l~vtdLrtGlsk-~fR~l~~~despI~~irvS~~------~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 495 GVRNDLVVTDLRTGLSK-RFRGLQKPDESPIRAIRVSSS------GRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred ceeeeEEEEEccccccc-ccccCCCCCcCcceeeeeccc------CceEEEEecccchHHHhhccchH
Confidence 33345778889888642 233 24579999999887 89999999999999999976543
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.34 E-value=0.00014 Score=81.20 Aligned_cols=101 Identities=21% Similarity=0.404 Sum_probs=82.4
Q ss_pred EEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCc-EEEEeCC
Q 000781 531 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IRIWDLG 609 (1288)
Q Consensus 531 Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~t-I~vWDl~ 609 (1288)
|.+-|.|.|.++.... .+ .-..+.+|.+.|.|++.+ -+| .++||+|..|| |||||..
T Consensus 155 g~k~GqvQi~dL~~~~------------~~-~p~~I~AH~s~Iacv~Ln-----~~G----t~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTK------------PN-APSIINAHDSDIACVALN-----LQG----TLVATASTKGTLIRIFDTE 212 (346)
T ss_pred CCccceEEEEEhhhcC------------cC-CceEEEcccCceeEEEEc-----CCc----cEEEEeccCcEEEEEEEcC
Confidence 4556899996654211 11 236788999999999994 577 99999999997 6899999
Q ss_pred CCceEEEEecc--CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc
Q 000781 610 SGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1288)
Q Consensus 610 tg~~l~~~~~H--~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~ 659 (1288)
+|+.+..|+.- ...|.|++|+|+ ..++|..|+-||+.|+.++..
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCC------ccEEEEEcCCCeEEEEEeecC
Confidence 99999988753 357999999999 789999999999999998763
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=2.1e-05 Score=95.91 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=101.6
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcC-C--cEEEEEecccccCCCCCCccccCCce--eEEEEecCCcCEEEEEE
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFS-G--EIEVIQFDLFERHNSPGASLKVNSHV--SRQYFLGHTGAVLCLAA 578 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~D-G--~I~i~~~d~~~~~~~~~~~~d~~t~~--~~~~l~gH~~~V~~L~~ 578 (1288)
.+..|...+.+..+.++... +++.+.+ + .|++| + +.+++ .+..+.+|. ..+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~----la~~s~~~~~~~i~i~--d-------------l~tg~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSK----LAYVSFENKKSQLVVH--D-------------LRSGARKVVASFRGHN---GAPAF 255 (429)
T ss_pred EeccCCCccccceEcCCCCE----EEEEEecCCCcEEEEE--e-------------CCCCceEEEecCCCcc---CceeE
Confidence 34456667777555555544 7766543 2 46663 3 33332 233344443 35788
Q ss_pred eecccCCCCCccCcEEEEE-ECCCcEEEE--eCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE-CCCcEEEE
Q 000781 579 HRMVGTAKGWSFNEVLVSG-SMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALA 654 (1288)
Q Consensus 579 ~p~~~SpdG~~~~~~L~SG-s~D~tI~vW--Dl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs-~DgsV~lW 654 (1288)
+||| +.|+.+ +.|+.+.|| |+.+++ ...+..|...+....|+|+ |+.++.++ .++...||
T Consensus 256 -----SPDG----~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 256 -----SPDG----SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD------GQSILFTSDRSGSPQVY 319 (429)
T ss_pred -----CCCC----CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC------CCEEEEEECCCCCceEE
Confidence 5788 766665 568876655 666665 4566677778899999999 77666555 57889999
Q ss_pred ECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 655 SLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 655 dl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
+++.. .....+ ++.. ....|+|+|++|+..+. ..+.+||+.+|+...
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~---------~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADGKTLVMING---------DNVVKQDLTSGSTEV 367 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC---------CCEEEEECCCCCeEE
Confidence 87532 222223 4443 46789999999986432 246679999987654
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=2.8e-05 Score=87.72 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=117.0
Q ss_pred cccccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCcccc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~ 557 (1288)
|.....+..+++.+.....+. .+. ..-...|+|+++- ......++.|+..| |.+|..+........... .
T Consensus 113 fava~nddvVriy~ksst~pt-~Lk---s~sQrnvtclawR---PlsaselavgCr~g-IciW~~s~tln~~r~~~~--~ 182 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPT-KLK---SVSQRNVTCLAWR---PLSASELAVGCRAG-ICIWSDSRTLNANRNIRM--M 182 (445)
T ss_pred hhhhccCcEEEEeccCCCCCc-eec---chhhcceeEEEec---cCCcceeeeeecce-eEEEEcCccccccccccc--c
Confidence 344444555666655543221 110 1123578885543 33333488888765 677765543322110000 0
Q ss_pred CCc-eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEE-CCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCC
Q 000781 558 NSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1288)
Q Consensus 558 ~t~-~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs-~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~ 635 (1288)
.+. ..+....|| ..|+++.|+ +|| ..+++++ .|..|+|||..+|..+.-..---+.+.-+.|+|+
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn-----~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd--- 249 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWN-----EDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD--- 249 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEc-----CCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC---
Confidence 010 122334566 789999995 577 8888887 5678999999999866554445678999999999
Q ss_pred CCCCCEEEEEECCCcEEEEECC-CceeEEEecCCCCCcEEEEEcCCCCEEEEEe
Q 000781 636 HPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWdl~-t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~ 688 (1288)
+++|.++.-|+..++|+.. +..+.+-.-+ .++|...+|+|.|.+|+-.|
T Consensus 250 ---gd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 250 ---GDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred ---CCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEE
Confidence 8999999999999999544 3334333333 34899999999999988654
No 226
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.25 E-value=1.3e-05 Score=88.47 Aligned_cols=128 Identities=14% Similarity=0.028 Sum_probs=97.5
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.+-.+|.+.+...... .+ +..+..++|.-..+...|+. ...+++.|||+|+.+..||
T Consensus 136 i~vs~s~G~~~~v~~t~~----------~l---e~vq~wk~He~E~Wta~f~~--------~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEM----------VL---EKVQTWKVHEFEAWTAKFSD--------KEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred EEEEcCCCcEEEEeccee----------ee---eecccccccceeeeeeeccc--------CCCceEEecCCCceEEEEE
Confidence 777777888886443211 01 23457889999999999962 2348999999999999999
Q ss_pred CC-CCceEEE-EeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC-CceeEEEecCCCCCcEEEEEcCCCC
Q 000781 608 LG-SGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRG 682 (1288)
Q Consensus 608 l~-tg~~l~~-~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~-t~~~l~~l~gH~~~V~~V~~sp~~~ 682 (1288)
++ .++++.. -+.|+..|.++.-+|.. +.++++|+.|..|++||.| -++++..-.- .+.|+.++++|...
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIF 266 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhh
Confidence 99 4455443 56799999999988762 6799999999999999999 5677755443 37899999999654
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=95.22 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=108.1
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEe------ccCc-----CEE
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH------HHVA-----PVR 625 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~------~H~~-----~V~ 625 (1288)
++.|..+..|.-..+.++++..++.| .+|+.|+.||.|..||.++.....++. .|.+ .|+
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~h---------gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT 232 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEEH---------GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT 232 (703)
T ss_pred ccccccccccccccccceeeeecCcc---------ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence 56677777777777999999997643 689999999999999999876655543 2333 399
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCC--CCCcEEEEEcCC--CCEEEEEecCCCcccCCCCeE
Q 000781 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH--PNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVL 701 (1288)
Q Consensus 626 ~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH--~~~V~~V~~sp~--~~~L~tg~~D~sgssD~DgtV 701 (1288)
++.|+.+ |-.++.|..+|.|.|||+++.+++.. ..| ..+|..+.|.+. ++.++ +.| ...+
T Consensus 233 al~F~d~------gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~--------S~D-k~~~ 296 (703)
T KOG2321|consen 233 ALKFRDD------GLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVV--------SMD-KRIL 296 (703)
T ss_pred EEEecCC------ceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEE--------ecc-hHHh
Confidence 9999988 78899999999999999999988654 334 347789999776 45555 344 2799
Q ss_pred EEEECCCCcEEEEEeCCCC
Q 000781 702 FIWDVKTGARERVLRGTAS 720 (1288)
Q Consensus 702 ~VWDl~tg~l~~~l~GH~~ 720 (1288)
+|||-.+|+....+..-..
T Consensus 297 kiWd~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 297 KIWDECTGKPMASIEPTSD 315 (703)
T ss_pred hhcccccCCceeeccccCC
Confidence 9999999998877665443
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=6.3e-05 Score=85.87 Aligned_cols=188 Identities=15% Similarity=0.097 Sum_probs=133.5
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC--CcEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRI 605 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D--~tI~v 605 (1288)
|+++-.+|.+.+|.-.. .|..+. ....+..| ..+..+.-++. ...++++||.. ..+++
T Consensus 118 Litc~~sG~l~~~~~k~----------~d~hss-~l~~la~g-~g~~~~r~~~~--------~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKS----------GDLHSS-KLIKLATG-PGLYDVRQTDT--------DPYIVATGGKENINELKI 177 (412)
T ss_pred EEEEecCCcEEEEeccC----------Cccccc-cceeeecC-CceeeeccCCC--------CCceEecCchhcccceee
Confidence 88888999999965321 111111 23334333 34444444321 23688889999 89999
Q ss_pred EeCCCCceEEEEeccC-----------cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEEecCCCCCcE
Q 000781 606 WDLGSGNLITVMHHHV-----------APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPA 673 (1288)
Q Consensus 606 WDl~tg~~l~~~~~H~-----------~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~ 673 (1288)
||++..+. .|.+.. -.++++.|.|... ...|+++..=+.|++||.+.+ +++..|.--..+++
T Consensus 178 wdle~~~q--iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~----~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 178 WDLEQSKQ--IWSAKNVPNDRLGLRVPVWITDIRFLEGSP----NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred eeccccee--eeeccCCCCccccceeeeeeccceecCCCC----CceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 99988744 443321 1357888877632 468999999999999999965 67888887788999
Q ss_pred EEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE-EeCCCCceEEeeeecCccceeeecceeeCcccccCCce
Q 000781 674 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1288)
Q Consensus 674 ~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~-l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~ 752 (1288)
++...|.++++++|-.- +.+..+|++++.+... +.|-++.+..++..+.. .++.+..+
T Consensus 252 ~~~l~p~gn~Iy~gn~~--------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~------------~~las~GL- 310 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTK--------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH------------PVLASCGL- 310 (412)
T ss_pred eeeecCCCcEEEEeccc--------chhheecccCceeeccccCCccCCcceEEEcCCC------------ceEEeecc-
Confidence 99999999999975433 7999999999999877 88888888777554321 23334445
Q ss_pred eeccCCcEEEEeCC
Q 000781 753 PIHEDGTFRQSQIQ 766 (1288)
Q Consensus 753 ~~~~D~tvr~w~~~ 766 (1288)
|.-+|+.+++
T Consensus 311 ----DRyvRIhD~k 320 (412)
T KOG3881|consen 311 ----DRYVRIHDIK 320 (412)
T ss_pred ----ceeEEEeecc
Confidence 9999999876
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=3.6e-06 Score=97.71 Aligned_cols=127 Identities=19% Similarity=0.198 Sum_probs=88.1
Q ss_pred cceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 501 ~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
+...+..|.+.|+.+.|...... +++|+.|-.|.+|+|..... .+....||...|..-.|-|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~----l~SgSDD~~vv~WdW~~~~~--------------~l~f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDV----LASGSDDLQVVVWDWVSGSP--------------KLSFESGHCNNVFQAKFIP 195 (559)
T ss_pred hhhcccCCCCccceeeecccCce----eeccCccceEEeehhhccCc--------------ccccccccccchhhhhccC
Confidence 44556789999999877777776 99999999999988863221 2334468999998888876
Q ss_pred cccCCCCCccCcEEEEEECCCcEEEEeCC-CCceE--EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~tI~vWDl~-tg~~l--~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
. ..++-+++.+.||.+++=.+. ++.+. ..+..|.++|..++.-|+.. ..|.|++.|+.+.-.|++
T Consensus 196 ~-------s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-----~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 196 F-------SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP-----KPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred C-------CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC-----Ccccccccccceeeeeec
Confidence 2 134789999999999988764 34333 34556888888888877732 234444444444444443
No 230
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.21 E-value=0.0001 Score=86.53 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=98.2
Q ss_pred EEEeeecCcccCCEEEEEE-cCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCc
Q 000781 514 SSMVISESFYAPYAIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592 (1288)
Q Consensus 514 s~~~is~~~~~p~~lv~Gs-~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~ 592 (1288)
.+.+.++..+ ++.+. .++.|.+++++..+. ..+....+.+ .....++++ +||| +
T Consensus 84 ~i~~~~~g~~----l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~-~~~~~~~~~-----~p~g----~ 138 (330)
T PRK11028 84 HISTDHQGRF----LFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEG-LEGCHSANI-----DPDN----R 138 (330)
T ss_pred EEEECCCCCE----EEEEEcCCCeEEEEEECCCCC-----------CCCceeeccC-CCcccEeEe-----CCCC----C
Confidence 3444455554 55544 478899977652211 0112233332 234567778 4677 6
Q ss_pred EE-EEEECCCcEEEEeCCCCceEE-------EEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-CCcEEEEECCC--c--
Q 000781 593 VL-VSGSMDCSIRIWDLGSGNLIT-------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLET--L-- 659 (1288)
Q Consensus 593 ~L-~SGs~D~tI~vWDl~tg~~l~-------~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-DgsV~lWdl~t--~-- 659 (1288)
++ ++...++.|.+||+.+...+. .... ......+.|+|+ +++++++.. +++|.+|+++. +
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pd------g~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPN------QQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCC------CCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 55 566677999999997633221 1111 234578899999 788877766 99999999973 2
Q ss_pred eeEEEecCC------CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 660 RVERMFPGH------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 660 ~~l~~l~gH------~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
+.+..+..+ ......+.++|+++++++++.. +++|.+|++.+.
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~~ 260 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSED 260 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeCC
Confidence 334444322 1233468999999999986443 579999999653
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.18 E-value=2.7e-05 Score=87.46 Aligned_cols=190 Identities=17% Similarity=0.113 Sum_probs=134.4
Q ss_pred ccccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCc
Q 000781 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1288)
Q Consensus 481 s~~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~ 560 (1288)
.+.+.++++|-..+.......+. -.-...+++..|..+... |++|..+|++.-.... .|.+..
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~----L~vg~~ngtvtefs~s-----------edfnkm 104 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRR----LYVGQDNGTVTEFALS-----------EDFNKM 104 (404)
T ss_pred ccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceE----EEEEEecceEEEEEhh-----------hhhhhc
Confidence 34566778887776644322211 122456777777777776 9999999999874432 234444
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCC------------------------------
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS------------------------------ 610 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t------------------------------ 610 (1288)
...+.+..|..+|..+.|+- .. .++++.+.|+.+..--.+.
T Consensus 105 ~~~r~~~~h~~~v~~~if~~-----~~----e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSL-----TH----EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred chhhhhhhhhcceeeEEecC-----Cc----eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 45666778999999988842 11 6778887776653221111
Q ss_pred -----------CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee-EEEecCCCCCcEEEEEc
Q 000781 611 -----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWD 678 (1288)
Q Consensus 611 -----------g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~-l~~l~gH~~~V~~V~~s 678 (1288)
-.++.++++|.+.|.++.|.|. ...+.||+.|..+.+||+-.++- ...+.+|...|..+..-
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCC------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 1235678899999999999998 78999999999999999976654 36778999999988887
Q ss_pred CCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 679 p~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
+.-..|++ .+.||.|-+||++-..
T Consensus 250 ~~t~~l~S--------~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 250 QHTRQLIS--------CGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhheeeee--------ccCCCeEEEEecccee
Confidence 77777773 4457999999997543
No 232
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=4e-06 Score=97.59 Aligned_cols=201 Identities=11% Similarity=0.074 Sum_probs=139.0
Q ss_pred ccCccccccccCCCCCC---------CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCC
Q 000781 483 CQDTVPRSEHVDSRQAG---------DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~~~---------~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~ 553 (1288)
..+...+|..+...... .....|.+|...|.++.-+.+..- +++++.|.++++|...+.+.
T Consensus 700 kGn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENS----FiSASkDKTVKLWSik~EgD------ 769 (1034)
T KOG4190|consen 700 KGNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENS----FISASKDKTVKLWSIKPEGD------ 769 (1034)
T ss_pred ccchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccc----eeeccCCceEEEEEeccccC------
Confidence 44566677654322110 234667899999988766666554 89999999999988765442
Q ss_pred ccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec--cCcCEEEEEECC
Q 000781 554 SLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSP 631 (1288)
Q Consensus 554 ~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~--H~~~V~~l~~sp 631 (1288)
+..+..+..++..|+.+|.++-|- .| .+.++| .|+-|.+||..-|+++..+.. ..+.+.-+...|
T Consensus 770 --~~~tsaCQfTY~aHkk~i~~igfL-----~~----lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~ 836 (1034)
T KOG4190|consen 770 --EIGTSACQFTYQAHKKPIHDIGFL-----AD----LRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE 836 (1034)
T ss_pred --ccccceeeeEhhhccCcccceeee-----ec----cceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc
Confidence 366677899999999999999994 22 255655 589999999998887654321 223333333333
Q ss_pred CCCCCCCCCEEEEE-ECCCcEEEEECCCceeEEEec-----CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 632 PQTEHPWSDCFLSV-GEDFSVALASLETLRVERMFP-----GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 632 ~~~~~~~g~~l~Sg-s~DgsV~lWdl~t~~~l~~l~-----gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
+-. ...+..| +...+|+++|-|.++....++ +...-+.+++..+.|+.++.|= + .|+|-+-|
T Consensus 837 nv~----~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L------S--nGci~~LD 904 (1034)
T KOG4190|consen 837 NVD----RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL------S--NGCIAILD 904 (1034)
T ss_pred cCc----chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh------c--CCcEEEEe
Confidence 311 3444444 778999999999887655443 3334578999999999999643 2 38999999
Q ss_pred CCCCcEEEEEeCC
Q 000781 706 VKTGARERVLRGT 718 (1288)
Q Consensus 706 l~tg~l~~~l~GH 718 (1288)
.++|..+...+..
T Consensus 905 aR~G~vINswrpm 917 (1034)
T KOG4190|consen 905 ARNGKVINSWRPM 917 (1034)
T ss_pred cCCCceeccCCcc
Confidence 9999988766543
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=4.2e-05 Score=86.32 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=109.1
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEe-cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~-gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
++.+..|-.|++++-. . ++...|+ .-...|+|++|-| .+ ...|+.|+. .-|++|
T Consensus 113 fava~nddvVriy~ks--s--------------t~pt~Lks~sQrnvtclawRP-----ls---aselavgCr-~gIciW 167 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKS--S--------------TCPTKLKSVSQRNVTCLAWRP-----LS---ASELAVGCR-AGICIW 167 (445)
T ss_pred hhhhccCcEEEEeccC--C--------------CCCceecchhhcceeEEEecc-----CC---cceeeeeec-ceeEEE
Confidence 6778888888884422 1 1122222 1246799999954 43 245666665 468999
Q ss_pred eCCCC----ce----------EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-CCcEEEEECCCceeEEEecCCCCC
Q 000781 607 DLGSG----NL----------ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLETLRVERMFPGHPNY 671 (1288)
Q Consensus 607 Dl~tg----~~----------l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-DgsV~lWdl~t~~~l~~l~gH~~~ 671 (1288)
..... .. +.+..+| .+|+++.|+++ |..+++++. |..|.|||..++.++.....-.+.
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC------CCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 76521 11 1223345 68999999999 788888875 789999999999887665445578
Q ss_pred cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE-CCCCcEEEEEeCCCCceEEeeeec
Q 000781 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 672 V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD-l~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+.-+.|+||+++|+++.- |+..++|+ -++...++-..|.. .|....+.+
T Consensus 241 ~slLkwSPdgd~lfaAt~--------davfrlw~e~q~wt~erw~lgsg-rvqtacWsp 290 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATC--------DAVFRLWQENQSWTKERWILGSG-RVQTACWSP 290 (445)
T ss_pred eeeEEEcCCCCEEEEecc--------cceeeeehhcccceecceeccCC-ceeeeeecC
Confidence 899999999999997443 38999994 45566666555544 555444443
No 234
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.14 E-value=1.4e-05 Score=89.73 Aligned_cols=103 Identities=26% Similarity=0.442 Sum_probs=83.6
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
...|-+.|.|.+..+.. ....++.++.+|.+.++|+.|.| . +.+|.||..|..|.+||
T Consensus 168 ~fvGd~~gqvt~lr~~~-------------~~~~~i~~~~~h~~~~~~l~Wd~-----~----~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQ-------------NGCQLITTFNGHTGEVTCLKWDP-----G----QRLLFSGASDHSVIMWD 225 (404)
T ss_pred EEecccccceEEEEEee-------------cCCceEEEEcCcccceEEEEEcC-----C----CcEEEeccccCceEEEe
Confidence 45666777888776652 23347889999999999999943 3 37999999999999999
Q ss_pred CCCCc-eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC
Q 000781 608 LGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1288)
Q Consensus 608 l~tg~-~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t 658 (1288)
+.-.+ ....+.+|.+.|..+...+. -..+.|++.||.|.+||++.
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccc
Confidence 97544 45677899999999988776 67899999999999999864
No 235
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.08 E-value=1.1e-05 Score=105.02 Aligned_cols=147 Identities=10% Similarity=0.141 Sum_probs=114.8
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEe-cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~-gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
-++|+.||.+++|.|. .++.+..++ +-..+|+.+.|+ ..| +.+.-+..||.+.+|
T Consensus 2223 Yltgs~dgsv~~~~w~---------------~~~~v~~~rt~g~s~vtr~~f~-----~qG----nk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWG---------------HGQQVVCFRTAGNSRVTRSRFN-----HQG----NKFGIVDGDGDLSLW 2278 (2439)
T ss_pred EEecCCCceEEEEecc---------------CCCeEEEeeccCcchhhhhhhc-----ccC----CceeeeccCCceeec
Confidence 6899999999998875 222333332 223789999984 466 778888899999999
Q ss_pred eCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE---CCCcEEEEECCC---ceeEEEecCCCCCcEEEEEcCC
Q 000781 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLET---LRVERMFPGHPNYPAKVVWDCP 680 (1288)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs---~DgsV~lWdl~t---~~~l~~l~gH~~~V~~V~~sp~ 680 (1288)
.+. .++....+.|......++|- +..+++++ +++.+.+||..- ..++. ..|.+.++++++-|.
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi--------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFI--------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred ccC-CcceeccccCCccccceeee--------ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc
Confidence 987 67777888999999988886 34566653 578999999653 23445 679999999999999
Q ss_pred CCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 681 ~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
.+.|++|+++ |.|++||++..++.++++.
T Consensus 2348 ~qllisggr~--------G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2348 HQLLISGGRK--------GEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred ceEEEecCCc--------CcEEEeehHHHHHHHHhhh
Confidence 9999976654 9999999999888877764
No 236
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.04 E-value=4.2e-05 Score=87.77 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=85.3
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEe-cCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPN 670 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l-~gH~~ 670 (1288)
......+++..+.+|....+.+. -+-||-..++.|+++|| ++.|+++..|..||+-....--.+..| -||..
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 34455667778888887765544 44599999999999999 899999999999999887765555444 58999
Q ss_pred CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 671 ~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
+|..++.-++.. |++ ++| |+++|+||+++|.+++++.
T Consensus 196 FVS~isl~~~~~-LlS------~sG--D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDNYL-LLS------GSG--DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccCce-eee------cCC--CCcEEEEecccCCcccccc
Confidence 999999987544 664 233 5899999999999886654
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.00073 Score=80.43 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=105.3
Q ss_pred CCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcC-----EEEEEEeecc
Q 000781 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-----VLCLAAHRMV 582 (1288)
Q Consensus 508 h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~-----V~~L~~~p~~ 582 (1288)
..+.++++..-+.... +++|+.+|.+..|+ +.-... +.+-........|.+. |+++.|.
T Consensus 174 ~~~~lN~v~in~~hgL----la~Gt~~g~VEfwD--pR~ksr-------v~~l~~~~~v~s~pg~~~~~svTal~F~--- 237 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGL----LACGTEDGVVEFWD--PRDKSR-------VGTLDAASSVNSHPGGDAAPSVTALKFR--- 237 (703)
T ss_pred ccccceeeeecCccce----EEecccCceEEEec--chhhhh-------heeeecccccCCCccccccCcceEEEec---
Confidence 3356666555555555 89999999999944 322110 0000111122334443 9999993
Q ss_pred cCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEE-eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~-~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
-|| -.++.|..+|.|.|+|+++.+++..- ++..-+|..+.|.+... +..++| .+...++|||-.+|+.
T Consensus 238 --d~g----L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~----q~~v~S-~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 238 --DDG----LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ----QNKVVS-MDKRILKIWDECTGKP 306 (703)
T ss_pred --CCc----eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC----CceEEe-cchHHhhhcccccCCc
Confidence 456 78999999999999999998876543 34456899999987621 234444 3457899999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEec
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~ 689 (1288)
...+..- ..++.+++-|++.+++++-.
T Consensus 307 ~asiEpt-~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 307 MASIEPT-SDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eeecccc-CCcCceeeecCCceEEEecC
Confidence 8877654 36999999999999887543
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0005 Score=84.13 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=96.0
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC---CCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~---D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
..+.+..|...+.+..| +||| +.|+..+. +..|.+||+.+++. ..+..+.+.+....|+|+
T Consensus 193 ~~~~lt~~~~~v~~p~w-----SpDG----~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPD------ 256 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRF-----SPNR----QEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPD------ 256 (435)
T ss_pred CcEEEecCCCCeEeeEE-----CCCC----CEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCC------
Confidence 34567788889999999 5788 77776653 46899999998875 345566778889999999
Q ss_pred CCEE-EEEECCCc--EEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 639 SDCF-LSVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 639 g~~l-~Sgs~Dgs--V~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
|+.+ ++.+.|+. |.+||+++++.. .+..+........|+|+|++|+..+.. .+ +..|++||+.+++..+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~---~g--~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR---SG--SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC---CC--CCeEEEEECCCCCeEEe
Confidence 6655 46666665 667798887664 455566566789999999999865432 11 24799999987765443
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00033 Score=85.63 Aligned_cols=166 Identities=18% Similarity=0.176 Sum_probs=103.8
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcC-C--cEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecc
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFS-G--EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~D-G--~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~ 582 (1288)
..+...+.+..+.++... +++.+.+ + .|++ ++ +.+++. ..+..+.+...+..|
T Consensus 200 t~~~~~v~~p~wSpDg~~----la~~s~~~~~~~l~~--~d-------------l~~g~~-~~l~~~~g~~~~~~~---- 255 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKK----LAYVSFERGRSAIYV--QD-------------LATGQR-ELVASFRGINGAPSF---- 255 (433)
T ss_pred ecCCCccccccCCCCCCE----EEEEecCCCCcEEEE--EE-------------CCCCCE-EEeccCCCCccCceE----
Confidence 345556666444444443 6766533 3 4555 33 333332 233444555567788
Q ss_pred cCCCCCccCcEEEEEECCC--cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-CCc--EEEEECC
Q 000781 583 GTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFS--VALASLE 657 (1288)
Q Consensus 583 ~SpdG~~~~~~L~SGs~D~--tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-Dgs--V~lWdl~ 657 (1288)
+||| +.++++.+.++ .|.+||+.+++. ..+..|.+......|+|+ |+.++.++. ++. |.++|+.
T Consensus 256 -SpDG---~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 256 -SPDG---RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred -CCCC---CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECC
Confidence 5788 23445666666 599999998875 445566666678899999 787777664 454 6666777
Q ss_pred CceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 658 t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
+++.... ..+.......+|+|+|++|+..+.+ +.+..|++||+.+++..
T Consensus 325 ~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~~~~-----~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 325 GGSAERL-TFQGNYNARASVSPDGKKIAMVHGS-----GGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCeEEe-ecCCCCccCEEECCCCCEEEEEECC-----CCceeEEEEECCCCCeE
Confidence 7665432 2222345578999999999865432 11247999999988765
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00052 Score=83.93 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=109.9
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEc-C--CcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEee
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFF-S--GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~-D--G~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p 580 (1288)
.+..|...+.+..+.++... |++.+. + ..|++ |+ +.+++. ..+..+.+.+.+..|
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~----lay~s~~~g~~~i~~--~d-------------l~~g~~-~~l~~~~g~~~~~~~-- 253 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQE----ITYMSYANGRPRVYL--LD-------------LETGQR-ELVGNFPGMTFAPRF-- 253 (435)
T ss_pred EEecCCCCeEeeEECCCCCE----EEEEEecCCCCEEEE--EE-------------CCCCcE-EEeecCCCcccCcEE--
Confidence 34456677877666666554 666653 2 34555 43 334433 345567777888889
Q ss_pred cccCCCCCccCcEEEEEECCCc--EEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-C--CcEEEEE
Q 000781 581 MVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D--FSVALAS 655 (1288)
Q Consensus 581 ~~~SpdG~~~~~~L~SGs~D~t--I~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-D--gsV~lWd 655 (1288)
+||| +.++++.+.++. |.+||+.+++. ..+..+.+......|+|+ |+.++..+. + ..|.++|
T Consensus 254 ---SPDG---~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 254 ---SPDG---RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD------GSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ---CCCC---CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC------CCEEEEEECCCCCCeEEEEE
Confidence 5788 234567777765 77779887765 456667777788999999 787777664 3 3678889
Q ss_pred CCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 656 l~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
+.+++... +..+...+....|+|+|++|+....+ .+ +..|.+||+.++.
T Consensus 321 ~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~---~~--~~~i~~~d~~~~~ 369 (435)
T PRK05137 321 ADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG---GG--QFSIGVMKPDGSG 369 (435)
T ss_pred CCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC---CC--ceEEEEEECCCCc
Confidence 87766543 33334456678999999999875543 11 2578999986654
No 241
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.94 E-value=2.1e-05 Score=61.83 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=37.0
Q ss_pred CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 611 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 611 g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
|+++++|.+|.++|++++|+|+ +.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 4688999999999999999999 89999999999999997
No 242
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.93 E-value=2.7e-05 Score=61.15 Aligned_cols=39 Identities=36% Similarity=0.630 Sum_probs=35.3
Q ss_pred ceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 560 ~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++++++.+|.+.|++++|+ |++ ++|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~-----~~~----~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS-----PDG----NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE-----TTS----SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe-----ccc----ccceeeCCCCEEEEEC
Confidence 35789999999999999996 466 8999999999999997
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.00061 Score=83.19 Aligned_cols=142 Identities=11% Similarity=0.015 Sum_probs=92.8
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC-CcEEEE--eCCCCceEEEEeccCcCEEEEEECCCC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-CSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQ 633 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D-~tI~vW--Dl~tg~~l~~~~~H~~~V~~l~~sp~~ 633 (1288)
+++++.. .+..+...+....| +||| +.|+..+.+ +...+| |+.+++. ..+..+........|+|+
T Consensus 274 ~~tg~~~-~lt~~~~~~~~~~w-----SPDG----~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD- 341 (429)
T PRK03629 274 LASGQIR-QVTDGRSNNTEPTW-----FPDS----QNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD- 341 (429)
T ss_pred CCCCCEE-EccCCCCCcCceEE-----CCCC----CEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC-
Confidence 3344433 34444556778889 5788 777666654 444444 6766654 344445556678899999
Q ss_pred CCCCCCCEEEEEECC---CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 634 TEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 634 ~~~~~g~~l~Sgs~D---gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
|+.++..+.+ ..|.+||+.+++.......+ ......|+|||.+|+..+.+ +. ...+++|++ +|.
T Consensus 342 -----G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~--~~---~~~l~~~~~-~G~ 408 (429)
T PRK03629 342 -----GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQ--GM---GSVLNLVST-DGR 408 (429)
T ss_pred -----CCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcC--CC---ceEEEEEEC-CCC
Confidence 7888776553 46889999988754332222 23467899999999987655 11 146888998 566
Q ss_pred EEEEEeCCCCceE
Q 000781 711 RERVLRGTASHSM 723 (1288)
Q Consensus 711 l~~~l~GH~~~vi 723 (1288)
..+.+.+|.+.+.
T Consensus 409 ~~~~l~~~~~~~~ 421 (429)
T PRK03629 409 FKARLPATDGQVK 421 (429)
T ss_pred CeEECccCCCCcC
Confidence 6777888776654
No 244
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=2.3e-05 Score=88.00 Aligned_cols=126 Identities=16% Similarity=0.168 Sum_probs=101.6
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC-----ceEEEEeccCcCEEEEEECC-CCCCCCCCCEE
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSP-PQTEHPWSDCF 642 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg-----~~l~~~~~H~~~V~~l~~sp-~~~~~~~g~~l 642 (1288)
-.+.|.++.|+. .+ ++++.|...|.|...|++.+ .+.+++ -|...|+++.... + ++++
T Consensus 251 sksDVfAlQf~~-----s~----nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFAG-----SD----NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKL 314 (425)
T ss_pred cchhHHHHHhcc-----cC----CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccc------cceE
Confidence 567899999952 23 79999999999999999864 456666 5889999998776 4 7899
Q ss_pred EEEECCCcEEEEECCCcee---EEEecCCCCCcE--EEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 643 LSVGEDFSVALASLETLRV---ERMFPGHPNYPA--KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 643 ~Sgs~DgsV~lWdl~t~~~---l~~l~gH~~~V~--~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
.+.+.+|+|++||+|--++ +..+.||.+.-. -+-.++....+++++ | |...|||.++.|+++.++.-
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-------d-DcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-------D-DCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-------C-eeEEEEEecccCceeeccCC
Confidence 9999999999999998877 999999976433 445577778888533 3 68999999999999988763
Q ss_pred C
Q 000781 718 T 718 (1288)
Q Consensus 718 H 718 (1288)
.
T Consensus 387 ~ 387 (425)
T KOG2695|consen 387 P 387 (425)
T ss_pred C
Confidence 3
No 245
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.0011 Score=80.89 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=81.4
Q ss_pred cCEEEEEEeecccCCCCCccCcEEE-EEECCC--cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC
Q 000781 571 GAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1288)
Q Consensus 571 ~~V~~L~~~p~~~SpdG~~~~~~L~-SGs~D~--tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~ 647 (1288)
+.+..+.| +||| +.|+ +.+.++ .|.+||+.+++..+ +..+...+....|+|+ |+.|+..+.
T Consensus 243 ~~~~~~~~-----SPDG----~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD------G~~I~f~s~ 306 (429)
T PRK03629 243 RHNGAPAF-----SPDG----SKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD------SQNLAYTSD 306 (429)
T ss_pred CCcCCeEE-----CCCC----CEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC------CCEEEEEeC
Confidence 33446788 5788 6555 445555 58899999887644 4444567888999999 788877765
Q ss_pred C-CcEEEE--ECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 648 D-FSVALA--SLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 648 D-gsV~lW--dl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
+ +...|| |+.+++.. .+..+........|+|+|++|+..+.+ +....|++||+++++..
T Consensus 307 ~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-----~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 307 QAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-----GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-----CCCceEEEEECCCCCeE
Confidence 4 444555 67666543 333333455678999999999876543 11257999999988753
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.87 E-value=1.8e-05 Score=103.20 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=120.6
Q ss_pred cccccCccccccccCCCCCCCcceec-ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccC
Q 000781 480 LTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1288)
Q Consensus 480 ~s~~~s~~~lWd~~~~~~~~~~~~~~-~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~ 558 (1288)
+.+.++.++.|.--... .+..| ..-..+|+.+.|...... .-.+-.||.+-+|...
T Consensus 2225 tgs~dgsv~~~~w~~~~----~v~~~rt~g~s~vtr~~f~~qGnk----~~i~d~dg~l~l~q~~--------------- 2281 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQ----QVVCFRTAGNSRVTRSRFNHQGNK----FGIVDGDGDLSLWQAS--------------- 2281 (2439)
T ss_pred ecCCCceEEEEeccCCC----eEEEeeccCcchhhhhhhcccCCc----eeeeccCCceeecccC---------------
Confidence 34455666666544332 12222 111145555444333332 4555567777774422
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEE---CCCcEEEEeCCC--C-ceEEEEeccCcCEEEEEECCC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS---MDCSIRIWDLGS--G-NLITVMHHHVAPVRQIILSPP 632 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs---~D~tI~vWDl~t--g-~~l~~~~~H~~~V~~l~~sp~ 632 (1288)
.++....+.|......+.|- | ..+++++ +++.+.+||..- + .+++ +.|.+.++++++.|.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi-------~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFI-------G----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred -CcceeccccCCccccceeee-------e----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc
Confidence 34667778899999998884 1 4566654 578999999752 2 2455 789999999999999
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
.+.|+||+.+|.|++||++..+.+++++. ++ ...++++|+. .|.++||++..-.++
T Consensus 2348 ------~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss--------~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2348 ------HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS--------EGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ------ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc--------ccceEEEEccccchh
Confidence 78999999999999999999888777764 55 6778886433 389999999988877
Q ss_pred EEEeC
Q 000781 713 RVLRG 717 (1288)
Q Consensus 713 ~~l~G 717 (1288)
+++.+
T Consensus 2404 ~~~p~ 2408 (2439)
T KOG1064|consen 2404 HTFPS 2408 (2439)
T ss_pred hcCch
Confidence 77654
No 247
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=3.7e-05 Score=86.34 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=93.2
Q ss_pred CCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCC
Q 000781 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1288)
Q Consensus 509 ~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~ 588 (1288)
...|.+..|...... ++.|+.+|+|.++++-... .+ ++.+.+.|. |...|+|+..-. -+
T Consensus 252 ksDVfAlQf~~s~nL----v~~GcRngeI~~iDLR~rn----qG------~~~~a~rly-h~Ssvtslq~Lq----~s-- 310 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNL----VFNGCRNGEIFVIDLRCRN----QG------NGWCAQRLY-HDSSVTSLQILQ----FS-- 310 (425)
T ss_pred chhHHHHHhcccCCe----eEecccCCcEEEEEeeecc----cC------CCcceEEEE-cCcchhhhhhhc----cc--
Confidence 345666555544444 8999999999997754221 11 122455554 899999987631 12
Q ss_pred ccCcEEEEEECCCcEEEEeCCCCce---EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEe
Q 000781 589 SFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1288)
Q Consensus 589 ~~~~~L~SGs~D~tI~vWDl~tg~~---l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l 665 (1288)
++.|.+.+++|+|++||++.-++ ++.+.||...-.-+-+.- ++....++++++|...|+|.++.+..+.++
T Consensus 311 --~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 311 --QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred --cceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc----ccccceEEEccCeeEEEEEecccCceeecc
Confidence 38999999999999999998777 888888865433332221 222568899999999999999999988877
Q ss_pred cC
Q 000781 666 PG 667 (1288)
Q Consensus 666 ~g 667 (1288)
+-
T Consensus 385 pf 386 (425)
T KOG2695|consen 385 PF 386 (425)
T ss_pred CC
Confidence 64
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.00057 Score=83.42 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=101.2
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEc-CCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~-DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
.+...+.+..+.++... +++.+. ++.-.++.++ +.+++.. .+....+.+.+..| +|
T Consensus 193 ~~~~~v~~p~wSPDG~~----la~~s~~~~~~~I~~~d-------------l~~g~~~-~l~~~~g~~~~~~~-----SP 249 (427)
T PRK02889 193 SSPEPIISPAWSPDGTK----LAYVSFESKKPVVYVHD-------------LATGRRR-VVANFKGSNSAPAW-----SP 249 (427)
T ss_pred cCCCCcccceEcCCCCE----EEEEEccCCCcEEEEEE-------------CCCCCEE-EeecCCCCccceEE-----CC
Confidence 44556666444444443 666653 3332333344 3344332 34444456678889 57
Q ss_pred CCCccCcEE-EEEECCCcEEEEeC--CCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-CCcEEEEEC--CCc
Q 000781 586 KGWSFNEVL-VSGSMDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASL--ETL 659 (1288)
Q Consensus 586 dG~~~~~~L-~SGs~D~tI~vWDl--~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-DgsV~lWdl--~t~ 659 (1288)
|| +.| ++.+.|+...+|.+ ..+. ...+..|.+.+....|+|+ |+.++..+. ++...||.+ .++
T Consensus 250 DG----~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 250 DG----RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred CC----CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECCCC
Confidence 88 555 57788888777654 4444 5566666666778899999 787776654 566677755 444
Q ss_pred eeEE-EecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 660 RVER-MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 660 ~~l~-~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
+... .+.+ .......|+|+|++|+..+.+ +.+..|++||+.+++...
T Consensus 319 ~~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~-----~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 319 AAQRVTFTG--SYNTSPRISPDGKLLAYISRV-----GGAFKLYVQDLATGQVTA 366 (427)
T ss_pred ceEEEecCC--CCcCceEECCCCCEEEEEEcc-----CCcEEEEEEECCCCCeEE
Confidence 4332 2333 234467899999999865543 112479999999887543
No 249
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.00035 Score=85.42 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=91.6
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC---CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D---~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
..+.+..|...+.+..| +||| +.|+..+.+ ..|.+||+.+++.. .+..+.+...+..|+|+
T Consensus 195 ~~~~lt~~~~~v~~p~w-----SpDg----~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpD------ 258 (433)
T PRK04922 195 NPQTILRSAEPILSPAW-----SPDG----KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPD------ 258 (433)
T ss_pred CceEeecCCCccccccC-----CCCC----CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCC------
Confidence 34556677888999999 5788 778777643 46999999888753 33344555668899999
Q ss_pred CCEE-EEEECCC--cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 639 SDCF-LSVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 639 g~~l-~Sgs~Dg--sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
|+.+ ++.+.++ .|.+||+.+++.. .+..|........|+|+|++|+..+.. .+ ...|+++|+.+++..+
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~---~g--~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR---GG--RPQIYRVAASGGSAER 330 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC---CC--CceEEEEECCCCCeEE
Confidence 6655 4556665 5999999988754 455565555789999999999865422 01 1358888888877544
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.81 E-value=0.00029 Score=84.16 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=86.8
Q ss_pred cEE-EEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC
Q 000781 592 EVL-VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1288)
Q Consensus 592 ~~L-~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~ 670 (1288)
+++ ++-..++.|.+.|..+.+.+.++......-..+.++|+ ++++...+.|+.|.++|+.+++.+.+++.-.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D------gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD------GRYLYVANRDGTVSVIDLATGKVVATIKVGG- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-------SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC------CCEEEEEcCCCeEEEEECCcccEEEEEecCC-
Confidence 444 56667899999999999999999876555455778999 8888888999999999999999998887543
Q ss_pred CcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC
Q 000781 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1288)
Q Consensus 671 ~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH 718 (1288)
....+++++||+++++++.. ++.+.|+|.+|.+.++++...
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE--
T ss_pred CcceEEEcCCCCEEEEEecC-------CCceeEeccccccceeecccc
Confidence 56799999999999987765 589999999999999887643
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.76 E-value=0.0029 Score=71.04 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=71.1
Q ss_pred CEEEEEEeecccCCCCCccCcEEEEEECC--CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCC
Q 000781 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~~L~SGs~D--~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
.+.-++| ++|. .+++|-.+. ..+-+||++..+....+ ....+|+...|.|.. ..++-+-...
T Consensus 320 g~g~laf-----s~Ds----~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~------prL~vctg~s 383 (447)
T KOG4497|consen 320 GAGKLAF-----SCDS----TYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGR------PRLVVCTGKS 383 (447)
T ss_pred ccceeee-----cCCc----eEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCC------ceEEEEcCCc
Confidence 4667889 4566 788876543 46889999877654433 456799999999983 3344444444
Q ss_pred cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecC
Q 000781 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1288)
Q Consensus 650 sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D 690 (1288)
.+.+|.+...+++.. ++....|..++|+-+|..++..+.|
T Consensus 384 rLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred eEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCC
Confidence 589999887666543 3333578999999999998876555
No 252
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.00074 Score=82.42 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=86.6
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC---CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D---~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
..+.+..|...+.+..| +||| +.|+..+.+ ..|.+||+.+++.. .+....+.+....|+|+
T Consensus 187 ~~~~l~~~~~~v~~p~w-----SPDG----~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPD------ 250 (427)
T PRK02889 187 NAQSALSSPEPIISPAW-----SPDG----TKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPD------ 250 (427)
T ss_pred CceEeccCCCCcccceE-----cCCC----CEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCC------
Confidence 34456678888999999 5788 777766643 35999999988754 33334456678999999
Q ss_pred CCEEE-EEECCCcEEEEEC--CCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCC--eEEEEECCCCcEE
Q 000781 639 SDCFL-SVGEDFSVALASL--ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD--VLFIWDVKTGARE 712 (1288)
Q Consensus 639 g~~l~-Sgs~DgsV~lWdl--~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~Dg--tV~VWDl~tg~l~ 712 (1288)
|+.++ +.+.|+...||.+ ..+. ...+..|........|+|||++|+..+.. ++ .|++.++.+++..
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~-------~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR-------GGAPQIYRMPASGGAAQ 321 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC-------CCCcEEEEEECCCCceE
Confidence 77665 6778888777754 4444 45555565556778999999998864322 23 4455555666543
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.72 E-value=0.00011 Score=84.53 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=75.8
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEe-ccCcCEEEEEECCCCCCCCCCCE
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~-~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
...+.||-..++.+++ +||+ ++|+++..|..||+=....-..+..|. ||+..|..++.-++ ..
T Consensus 144 ~~~~lGhvSml~dVav-----S~D~----~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~ 207 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAV-----SPDD----QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YL 207 (390)
T ss_pred cchhhhhhhhhheeee-----cCCC----CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------ce
Confidence 3456699999999999 5677 999999999999998877666666654 69999999999876 67
Q ss_pred EEEEECCCcEEEEECCCceeEEEec
Q 000781 642 FLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
|+|+|.|+++++||+++|+++.++.
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccc
Confidence 9999999999999999999987764
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.68 E-value=0.0024 Score=77.23 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=85.4
Q ss_pred EEecCCcCEEEEEEeecccCCCCCccCc-EEEEEECCC--cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE
Q 000781 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 565 ~l~gH~~~V~~L~~~p~~~SpdG~~~~~-~L~SGs~D~--tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
.+..+.+.+.+..| +||| + ++++.+.++ .|.+||+.+++. ..+..|.+......|+|+ ++.
T Consensus 228 ~~~~~~~~~~~~~~-----spDg----~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d------g~~ 291 (417)
T TIGR02800 228 KVASFPGMNGAPAF-----SPDG----SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD------GKS 291 (417)
T ss_pred EeecCCCCccceEE-----CCCC----CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC------CCE
Confidence 34456667777888 5788 5 445665554 588999987764 344455555667789998 787
Q ss_pred EEEEEC-CC--cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 642 FLSVGE-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 642 l~Sgs~-Dg--sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
|+..+. ++ .|.++|+.+++.. .+..+...+....|+|++++++.++.+ + + -..|++||+.++..
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~--~--~-~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHRE--G--G-GFNIAVMDLDGGGE 358 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEcc--C--C-ceEEEEEeCCCCCe
Confidence 776654 33 5778888877654 333344567788999999999976554 1 1 14799999988654
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.67 E-value=0.048 Score=64.91 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=85.2
Q ss_pred cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC
Q 000781 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1288)
Q Consensus 568 gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~ 647 (1288)
+-.++|....|.| ++ +.=-+++|-++-++-++|++.. . ++..-...=+.+.|+|. +++++.++-
T Consensus 272 ~~~~pVhdf~W~p-----~S--~~F~vi~g~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fsp~------~r~il~agF 335 (561)
T COG5354 272 DLKDPVHDFTWEP-----LS--SRFAVISGYMPASVSVFDLRGN-L--RFYFPEQKRNTIFFSPH------ERYILFAGF 335 (561)
T ss_pred cccccceeeeecc-----cC--CceeEEecccccceeecccccc-e--EEecCCcccccccccCc------ccEEEEecC
Confidence 4478999999964 44 1134667789999999999765 3 33344556677889998 788888777
Q ss_pred C---CcEEEEECCCcee-EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 648 D---FSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 648 D---gsV~lWdl~t~~~-l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
| |.+-+||...... +..+.+- ...-+.|+|+++++.+..... ---.|..|+|||+..
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~--k~~~Dn~i~l~~v~g 396 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE--KLRVDNSIKLWDVYG 396 (561)
T ss_pred CccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCc--ccccCcceEEEEecC
Confidence 6 7899999876544 4466653 344678999999998743221 012368999999853
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.59 E-value=0.0021 Score=72.58 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=112.4
Q ss_pred ccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 506 ~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
..|.--|+++.+-++... +++ ..|-.|.+|.+..... +....|++ + ..+..-+.-|++..|||.+.
T Consensus 161 NaHtyhiNSIS~NsD~Et----~lS-ADdLRINLWnlei~d~---sFnIVDIK---P-~nmEeLteVITsaEFhp~~c-- 226 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKET----FLS-ADDLRINLWNLEIIDQ---SFNIVDIK---P-ANMEELTEVITSAEFHPHHC-- 226 (433)
T ss_pred ccceeEeeeeeecCccce----Eee-ccceeeeeccccccCC---ceeEEEcc---c-cCHHHHHHHHhhhccCHhHc--
Confidence 568888888766666664 444 4666666654331110 11111121 1 01111234588889998664
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCCce-E---------------EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCC
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNL-I---------------TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg~~-l---------------~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
++++-.+..|+|++-|++...+ . .-|.+-...|..+.|++. |+++++-.. -
T Consensus 227 ------n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s------GryilsRDy-l 293 (433)
T KOG1354|consen 227 ------NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS------GRYILSRDY-L 293 (433)
T ss_pred ------cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC------CcEEEEecc-c
Confidence 7888889999999999984321 1 112223456889999998 899887643 6
Q ss_pred cEEEEEC-CCceeEEEecCCCC------------Cc---EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 650 SVALASL-ETLRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 650 sV~lWdl-~t~~~l~~l~gH~~------------~V---~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
+|++||+ ...+++.+++-|.. .| ..++|+.++.+++||+.. +..+|++...|..
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~--------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN--------NVFRVFNLARGSK 363 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc--------ceEEEecCCCCcc
Confidence 8999999 56778877776642 23 478999999999997765 7999999766653
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.58 E-value=0.0068 Score=73.38 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=89.8
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC---CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D---~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
.+.+..+...+....| +||| ++|+.++.+ ..|++||+.+++... +..+.+.+.++.|+|+ +
T Consensus 182 ~~~l~~~~~~~~~p~~-----Spdg----~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD------g 245 (417)
T TIGR02800 182 PQTITRSREPILSPAW-----SPDG----QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD------G 245 (417)
T ss_pred CEEeecCCCceecccC-----CCCC----CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC------C
Confidence 3556667778888888 5788 777766644 479999999886533 3345667778999999 6
Q ss_pred CEEE-EEECCC--cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 640 ~~l~-Sgs~Dg--sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
+.|+ +.+.++ .|.+||+.+++.. .+..|........|+|++++|+..+.. .+ ...|++||+.+++..+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~---~g--~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDR---GG--SPQIYMMDADGGEVRR 316 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECC---CC--CceEEEEECCCCCEEE
Confidence 6554 555544 5888999877654 344454455678999999998865432 11 2479999998877543
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.56 E-value=0.0013 Score=73.17 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=90.5
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceE--EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCc
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l--~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dgs 650 (1288)
..++.|+ +.| ..++++-.+|.+.+-+...+... +.++.|.-+.....|+..+ .+.+.+|++|+.
T Consensus 124 ~lslD~~-----~~~----~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-----pnlvytGgDD~~ 189 (339)
T KOG0280|consen 124 ALSLDIS-----TSG----TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-----PNLVYTGGDDGS 189 (339)
T ss_pred eeEEEee-----ccC----ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-----CceEEecCCCce
Confidence 3466674 445 66889989999886665555443 4789999999999998663 379999999999
Q ss_pred EEEEECC-CceeEEE-ecCCCCCcEEEEEcCC-CCEEEEEecCCCcccCCCCeEEEEECCC-CcEE
Q 000781 651 VALASLE-TLRVERM-FPGHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKT-GARE 712 (1288)
Q Consensus 651 V~lWdl~-t~~~l~~-l~gH~~~V~~V~~sp~-~~~L~tg~~D~sgssD~DgtV~VWDl~t-g~l~ 712 (1288)
+..||+| .++++.. -+.|...|.+|.-+|. ..+++||+.| ..|++||.|. |+++
T Consensus 190 l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD--------e~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 190 LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD--------ECIRVLDTRNMGKPL 247 (339)
T ss_pred EEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc--------cceeeeehhcccCcc
Confidence 9999999 5555544 5678889999998875 6788887654 7999999984 5544
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.55 E-value=0.00048 Score=83.63 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=113.5
Q ss_pred CEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCC---ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC
Q 000781 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg---~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D 648 (1288)
.|-.+.|+|. |- .+.++++.+.-++| +|++... ..-..+.+|+..|+.+-|.|.. ...+++++-|
T Consensus 69 ~vad~qws~h---~a---~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~-----pdVlatcsvd 136 (1081)
T KOG0309|consen 69 QVADVQWSPH---PA---KPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-----PDVLATCSVD 136 (1081)
T ss_pred hhcceecccC---CC---CceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCC-----Ccceeecccc
Confidence 4667788652 11 24688888877664 8988643 2345678999999999999873 4689999999
Q ss_pred CcEEEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC-cEEEEEeCCCCceEEee
Q 000781 649 FSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDH 726 (1288)
Q Consensus 649 gsV~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg-~l~~~l~GH~~~vi~~~ 726 (1288)
-.|..||++.. +++..+..-...-..|+|+--...+.+ ++. .+.|+|||.+.| ..+..++||.+.+..+.
T Consensus 137 t~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-------ssh-g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 137 TYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-------SSH-GNDIFVWDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred ccceeeeccCCCcceeeeecccccCceeeecccCcchhh-------hcc-CCceEEEeccCCCcceEEecccceeeehHH
Confidence 99999999975 456666555557778999875554442 232 268999999874 67889999998887765
Q ss_pred eecCccceeeecceeeCcccccCCceeeccCCcEEEEeCC
Q 000781 727 FCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1288)
Q Consensus 727 ~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~w~~~ 766 (1288)
|..... +.++....|++++.|+..
T Consensus 209 fnr~~~----------------s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 209 FNRFKY----------------SEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred Hhhhhh----------------hhhcccCCCCceeeeccc
Confidence 543211 123344459999999864
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.0084 Score=73.24 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=87.2
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEE-CCCcEEEEe--CCC-CceEEEEeccCcCEEEEEECCCCCCCCC
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWD--LGS-GNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs-~D~tI~vWD--l~t-g~~l~~~~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
.+...++.+......| +||| +.|+..+ .++...+|. +.. +.....+..+.+.+....|+|+
T Consensus 273 ~~lt~~~~~~~~~p~w-----SPDG----~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD------ 337 (428)
T PRK01029 273 RRLLNEAFGTQGNPSF-----SPDG----TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD------ 337 (428)
T ss_pred eEeecCCCCCcCCeEE-----CCCC----CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC------
Confidence 3333333344566788 5798 7655544 567666664 432 3334556556667788999999
Q ss_pred CCEEEEEECC---CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEE
Q 000781 639 SDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1288)
Q Consensus 639 g~~l~Sgs~D---gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l 715 (1288)
|+.|+..+.+ ..|.+||+.+++......+ ...+....|+|+|++|+....+ +....|++||+.+++..+..
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGN-----SNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEee
Confidence 7877766543 4799999998877544333 3456789999999988854432 12368999999888765443
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.41 E-value=0.0029 Score=71.53 Aligned_cols=134 Identities=14% Similarity=0.230 Sum_probs=93.4
Q ss_pred eEEEE-ecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-e--EEEEecc-----CcCEEEEEECCC
Q 000781 562 SRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-L--ITVMHHH-----VAPVRQIILSPP 632 (1288)
Q Consensus 562 ~~~~l-~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-~--l~~~~~H-----~~~V~~l~~sp~ 632 (1288)
|.+.+ .+|+-.|+++.++ .|+ +.++|+ +|-.|-+|+++--. + +.-++.| +.-|++-.|+|.
T Consensus 155 prRv~aNaHtyhiNSIS~N-----sD~----Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~ 224 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVN-----SDK----ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH 224 (433)
T ss_pred eeeeccccceeEeeeeeec-----Ccc----ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh
Confidence 34444 4799999999994 455 777765 58899999987332 2 2222222 456889999998
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECCCceeE----EEe------------cCCCCCcEEEEEcCCCCEEEEEecCCCcccC
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLETLRVE----RMF------------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l----~~l------------~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD 696 (1288)
. .+.|+-.+.-|+|++-|+|....- ..| ..--..|..|.|++.|+|+++-..
T Consensus 225 ~-----cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy------- 292 (433)
T KOG1354|consen 225 H-----CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY------- 292 (433)
T ss_pred H-----ccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-------
Confidence 5 478999999999999999943210 111 111235789999999999995222
Q ss_pred CCCeEEEEEC-CCCcEEEEEeCCC
Q 000781 697 AVDVLFIWDV-KTGARERVLRGTA 719 (1288)
Q Consensus 697 ~DgtV~VWDl-~tg~l~~~l~GH~ 719 (1288)
-+|++||+ ...+.+.+++-|.
T Consensus 293 --ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 293 --LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred --ceeEEEeccccCCcceEEeehH
Confidence 59999999 4567788887774
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.013 Score=71.67 Aligned_cols=120 Identities=19% Similarity=0.129 Sum_probs=79.8
Q ss_pred CcCEEEEEEeecccCCCCCccCcEEE-EEECCC--cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE
Q 000781 570 TGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1288)
Q Consensus 570 ~~~V~~L~~~p~~~SpdG~~~~~~L~-SGs~D~--tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs 646 (1288)
.+.+....| +||| +.|+ +.+.++ .|.+||+.+++. ..+..+........|+|+ ++.++..+
T Consensus 242 ~g~~~~~~~-----SpDG----~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spD------g~~i~f~s 305 (430)
T PRK00178 242 EGLNGAPAW-----SPDG----SKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKD------GRTLYFTS 305 (430)
T ss_pred CCCcCCeEE-----CCCC----CEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCC------CCEEEEEE
Confidence 344556788 5788 6554 665555 588889988775 345556666777889999 77666555
Q ss_pred C-CC--cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 647 E-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 647 ~-Dg--sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
. ++ .|.++|+.+++....... ........|+|++++|+....+ +....|++||+.+++.
T Consensus 306 ~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~-----~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQ-----DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEcc-----CCceEEEEEECCCCCE
Confidence 3 33 577778887775433221 1233467899999999875543 1124699999998875
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00055 Score=80.35 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=133.6
Q ss_pred cccccccCccccccccCCCCCC---CcceecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCc
Q 000781 478 SDLTFCQDTVPRSEHVDSRQAG---DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1288)
Q Consensus 478 l~~s~~~s~~~lWd~~~~~~~~---~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~ 554 (1288)
+...+.+.++++|......... ....+++.|...|..+-|+.+.+. ++ +.||-|.+ ||++.+.......
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~----i~--ScD~giHl--WDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS----IA--SCDGGIHL--WDPFIGRLLAQME 821 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce----ee--eccCccee--ecccccchhHhhh
Confidence 4556778899999986443211 356788999999999999999875 44 46889999 5555432222111
Q ss_pred cccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEE-ECCCcEEEEeCCCCceEEEEec-----cCcCEEEEE
Q 000781 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIWDLGSGNLITVMHH-----HVAPVRQII 628 (1288)
Q Consensus 555 ~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SG-s~D~tI~vWDl~tg~~l~~~~~-----H~~~V~~l~ 628 (1288)
|+.+ .|-.+.|.|+.- -|. .+++.| +...+|+++|.+.++....++. -.+.+++++
T Consensus 822 dapk--------~~a~~~ikcl~n------v~~----~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 822 DAPK--------EGAGGNIKCLEN------VDR----HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cCcc--------cCCCceeEeccc------Ccc----hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 2111 122344555531 122 444444 8899999999998886665543 345689999
Q ss_pred ECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEE-EECC
Q 000781 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI-WDVK 707 (1288)
Q Consensus 629 ~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~V-WDl~ 707 (1288)
+.|. |+.++.+-..|+|.+.|.|+|+.+..++........++ -|.++.|+. +.-|.++.| |..-
T Consensus 884 Va~~------GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~--------saldHslaVnWhal 948 (1034)
T KOG4190|consen 884 VADK------GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQ--------SALDHSLAVNWHAL 948 (1034)
T ss_pred eccC------cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHh--------hcccceeEeeehhc
Confidence 9988 89999999999999999999999887765543333333 355666663 223578998 9877
Q ss_pred CCcEEEEEe
Q 000781 708 TGARERVLR 716 (1288)
Q Consensus 708 tg~l~~~l~ 716 (1288)
.|......+
T Consensus 949 dgimh~q~k 957 (1034)
T KOG4190|consen 949 DGIMHLQDK 957 (1034)
T ss_pred CCeeeeccC
Confidence 776544444
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.0049 Score=75.27 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=90.0
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC---CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCC
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D---~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g 639 (1288)
.+.+..|...+....| +||| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|+ |
T Consensus 191 ~~~l~~~~~~~~~p~w-----SpDG----~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD------G 254 (430)
T PRK00178 191 AVTLLQSREPILSPRW-----SPDG----KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD------G 254 (430)
T ss_pred ceEEecCCCceeeeeE-----CCCC----CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC------C
Confidence 3556667788999999 5788 777665543 368999999887533 3333445667899999 7
Q ss_pred CEEE-EEECCC--cEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 640 ~~l~-Sgs~Dg--sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
+.++ +.+.++ .|.+||+++++.. .+..+........|+|+++.|+..+.. +.+..|+++|+.+|+..+.
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~-----~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDR-----GGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEe
Confidence 7665 555555 5788899987754 355555556678999999988864322 1124789999988875443
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.33 E-value=0.00036 Score=84.69 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=96.0
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-eEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
....+.||..+|+.+-|+|.+. ..+++++.|..+..||+++.. ++..+..-...-..|.|+-. ..
T Consensus 106 Ief~lhghsraitd~n~~~q~p--------dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk------~p 171 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHP--------DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK------DP 171 (1081)
T ss_pred eEEEEecCccceeccccCCCCC--------cceeeccccccceeeeccCCCcceeeeecccccCceeeeccc------Cc
Confidence 4567889999999999987543 689999999999999998764 55566555566778899865 33
Q ss_pred EEEEEECCCcEEEEECCCc-eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 641 CFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 641 ~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
-+...+..+.|.+||++.| .++..+++|...|+.+.|+.--...+ -+.+.|++|+.||...
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~-------~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI-------MSSSNDGTVKFWDYSK 233 (1081)
T ss_pred chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh-------cccCCCCceeeecccc
Confidence 4555566778999999976 56788999999999999976432222 1344579999999864
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.004 Score=74.51 Aligned_cols=124 Identities=17% Similarity=0.248 Sum_probs=93.0
Q ss_pred CCcCEEEEEEeecccCCCCCccCc-EEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~-~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~ 647 (1288)
..++|.++.|+ |+| .+ -++-|-+=.++-|+|++ ++.+..| -.++-+++-|+|. |++++-++-
T Consensus 269 k~GPVhdv~W~-----~s~---~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~------g~ii~lAGF 331 (566)
T KOG2315|consen 269 KEGPVHDVTWS-----PSG---REFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH------GNIILLAGF 331 (566)
T ss_pred CCCCceEEEEC-----CCC---CEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC------CCEEEEeec
Confidence 37999999995 566 13 35557788899999985 5555444 5788999999999 898888776
Q ss_pred C---CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 648 D---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 648 D---gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
+ |.+-+||..+.+++..+..- .-+-+.|+|||.|++|+.... ---.|+.++||+. +|.++..
T Consensus 332 GNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEe-cCceeeh
Confidence 4 89999999999998887653 345689999999999864210 1123689999998 5666543
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.017 Score=71.10 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=77.4
Q ss_pred CEEEEEEeecccCCCCCccCc-EEEEEECCCc--EEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-
Q 000781 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE- 647 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~-~L~SGs~D~t--I~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~- 647 (1288)
......| +||| + ++++.+.++. |.+||+.+++. ..+..+........|+|+ ++.++..+.
T Consensus 263 ~~~~~~w-----SPDG----~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD------G~~I~f~s~~ 326 (448)
T PRK04792 263 INGAPRF-----SPDG----KKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPD------GKSLIFTSER 326 (448)
T ss_pred CcCCeeE-----CCCC----CEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECC
Confidence 3446778 5788 5 4456677775 77788887764 445556666778899999 776665543
Q ss_pred CC--cEEEEECCCceeEEE-ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 648 DF--SVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 648 Dg--sV~lWdl~t~~~l~~-l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
++ .|.++|+.+++.... +.++ ......|+|+|++|+....+ .+ ...|+++|+.+++..
T Consensus 327 ~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~----~g-~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 327 GGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRT----NG-KFNIARQDLETGAMQ 387 (448)
T ss_pred CCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEec----CC-ceEEEEEECCCCCeE
Confidence 44 466668877765433 3333 33457999999999875443 11 136777898888753
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.21 E-value=0.018 Score=70.45 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEE-C----CCcEEEEeCCCC---ceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-M----DCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs-~----D~tI~vWDl~tg---~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
..+......| |||| +.|+-.+ . |..+..||+..+ +.......+.+......|+|+ |+
T Consensus 229 ~~g~~~~p~w-----SPDG----~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD------G~ 293 (428)
T PRK01029 229 LQGNQLMPTF-----SPRK----KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD------GT 293 (428)
T ss_pred CCCCccceEE-----CCCC----CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC------CC
Confidence 3444556778 6799 6555433 2 334555787653 333333333344567899999 78
Q ss_pred EEEEEE-CCCcEEEEE--CCC-ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 641 CFLSVG-EDFSVALAS--LET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 641 ~l~Sgs-~DgsV~lWd--l~t-~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
.|+..+ .++...+|. +.. +.....+..+...+....|+|+|++|+..+.+ +....|++||+.+|+....
T Consensus 294 ~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-----~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 294 RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-----KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-----CCCcEEEEEECCCCCeEEc
Confidence 777665 467666664 432 23344454454567789999999999865543 1125899999999886543
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.0011 Score=80.20 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=119.8
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
....|..+--+..+ +++|+.||.+++...+...+.....+.-...+-..-++|.||.+.|.-+.|+.
T Consensus 15 vkL~c~~WNke~gy----IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--------- 81 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGY----IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--------- 81 (1189)
T ss_pred ceEEEEEEcccCCe----EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc---------
Confidence 45666556556666 99999999999988765443322222222233335678999999999999952
Q ss_pred cCcEEEEEECCCcEEEEeCCCCceEEEE--eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeE-EEec
Q 000781 590 FNEVLVSGSMDCSIRIWDLGSGNLITVM--HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMFP 666 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~tg~~l~~~--~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l-~~l~ 666 (1288)
..+.|-|...+|.|.+|-+..|.-...+ ....+.|.+++|+.+ |..++-+..||.|.+=.++..+.- ..+.
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d------G~kIcIvYeDGavIVGsvdGNRIwgKeLk 155 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD------GTKICIVYEDGAVIVGSVDGNRIWGKELK 155 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC------CcEEEEEEccCCEEEEeeccceecchhcc
Confidence 2378899999999999999887643322 224567999999999 899999999999998888765543 2333
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 667 gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
|. ....+.|++|...++.+-. .|.+.++|.+
T Consensus 156 g~--~l~hv~ws~D~~~~Lf~~a--------nge~hlydnq 186 (1189)
T KOG2041|consen 156 GQ--LLAHVLWSEDLEQALFKKA--------NGETHLYDNQ 186 (1189)
T ss_pred hh--eccceeecccHHHHHhhhc--------CCcEEEeccc
Confidence 32 2347899999887664322 3789999875
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0093 Score=71.48 Aligned_cols=136 Identities=12% Similarity=0.125 Sum_probs=95.9
Q ss_pred cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC--EEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcC
Q 000781 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD--CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1288)
Q Consensus 602 tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~--~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp 679 (1288)
++++.++....+...+ ...+||.++.|+|. +. .++-|-.-.++.|+|++ +.++..|. .++-+++.|+|
T Consensus 252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s------~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp 321 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPS------GREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP 321 (566)
T ss_pred eEEEEEecCceEEEec-CCCCCceEEEECCC------CCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC
Confidence 6777787733333333 45799999999999 54 55566678899999998 66777764 35667999999
Q ss_pred CCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCc
Q 000781 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGT 759 (1288)
Q Consensus 680 ~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~t 759 (1288)
.|++|+.++.+ .--|.|-|||..+.+++..+..-.. +...||+ +|..+. +....+-+++ |+.
T Consensus 322 ~g~ii~lAGFG-----NL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-------dGe~fl--TATTaPRlrv--dNg 383 (566)
T KOG2315|consen 322 HGNIILLAGFG-----NLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-------DGEYFL--TATTAPRLRV--DNG 383 (566)
T ss_pred CCCEEEEeecC-----CCCCceEEEeccchhhccccccCCc--eEEEEcC-------CCcEEE--EEeccccEEe--cCC
Confidence 99999877654 2348999999999888877765442 3344776 333111 1123455666 999
Q ss_pred EEEEeC
Q 000781 760 FRQSQI 765 (1288)
Q Consensus 760 vr~w~~ 765 (1288)
+|+|+.
T Consensus 384 ~Kiwhy 389 (566)
T KOG2315|consen 384 IKIWHY 389 (566)
T ss_pred eEEEEe
Confidence 999996
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.076 Score=65.02 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=66.8
Q ss_pred CCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCC-CCcce---------eeEEeeccccceEEeEeccccccccCcc
Q 000781 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSS-YSEIK---------PVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1288)
Q Consensus 13 ~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~-~~~~~---------p~~~l~GH~~~Vt~L~~~s~~~~~~~~~ 82 (1288)
.|...+..|+.+.....+||.||.||.+++-.+.+.+ +.+.. .-+.|.||.+.|.-++.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW----------- 79 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW----------- 79 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe-----------
Confidence 3667789999999999999999999999999998632 11111 23467899999988843
Q ss_pred cccccccccCcccccccCCCCEEEEEeCCCeEEEEECCCCe
Q 000781 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGH 123 (1288)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~ 123 (1288)
...++.|-|+..+|.|.||=+..|.
T Consensus 80 ----------------Ne~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 80 ----------------NENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred ----------------ccccccccccCCCceEEEEeeeccc
Confidence 5667888899999999999998776
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.10 E-value=0.56 Score=55.71 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=83.6
Q ss_pred CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC--CCce--EEEEecc------CcCEEEEEECCCCCCCCCC
Q 000781 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNL--ITVMHHH------VAPVRQIILSPPQTEHPWS 639 (1288)
Q Consensus 570 ~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~--tg~~--l~~~~~H------~~~V~~l~~sp~~~~~~~g 639 (1288)
...-.-+.|+ ||| +...+..-.+++|.++++. +++. +...... ......+.++|+ |
T Consensus 191 G~GPRh~~f~-----pdg---~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g 256 (345)
T PF10282_consen 191 GSGPRHLAFS-----PDG---KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------G 256 (345)
T ss_dssp TSSEEEEEE------TTS---SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------S
T ss_pred CCCCcEEEEc-----CCc---CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------C
Confidence 3456778895 577 2345666778899999998 4432 2333211 125788999999 6
Q ss_pred CE-EEEEECCCcEEEEECC--Cc--eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC--CCCcEE
Q 000781 640 DC-FLSVGEDFSVALASLE--TL--RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARE 712 (1288)
Q Consensus 640 ~~-l~Sgs~DgsV~lWdl~--t~--~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl--~tg~l~ 712 (1288)
++ +++.-.+.+|.++++. ++ +.+..+......++.+.++|+|++|++++.+ ++.|.+|++ ++|.+.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-------s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-------SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-------CCeEEEEEEeCCCCcEE
Confidence 65 5555568899999993 33 3344444334468999999999999998765 478999865 678876
Q ss_pred EEE
Q 000781 713 RVL 715 (1288)
Q Consensus 713 ~~l 715 (1288)
..-
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
No 273
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.10 E-value=0.0014 Score=71.68 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=63.7
Q ss_pred cCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCce-EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCC
Q 000781 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 571 ~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~-l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
.+|++++-||+.. +++++|+.||.+-+||.+.... ...++.|..+++.+-|+|.. +..+++++.||
T Consensus 180 ~~v~~l~~hp~qq--------~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----p~~Lft~sedG 246 (319)
T KOG4714|consen 180 DAVTALCSHPAQQ--------HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----PEHLFTCSEDG 246 (319)
T ss_pred ccchhhhCCcccc--------cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----chheeEecCCC
Confidence 3499999887432 7999999999999999988753 34578899999999999984 57899999999
Q ss_pred cEEEEECCC
Q 000781 650 SVALASLET 658 (1288)
Q Consensus 650 sV~lWdl~t 658 (1288)
++.-||-.+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999774
No 274
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.07 E-value=0.011 Score=72.71 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=86.9
Q ss_pred EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC-CC--cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 564 ~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~-D~--tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
+.+..+...+.+..| +||| +.|+-.+. ++ .|.+||+.+++... +....+......|+|+ |+
T Consensus 211 ~~l~~~~~~~~~p~w-----SPDG----~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD------G~ 274 (448)
T PRK04792 211 QMLLRSPEPLMSPAW-----SPDG----RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD------GK 274 (448)
T ss_pred eEeecCCCcccCceE-----CCCC----CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC------CC
Confidence 455566778889999 5788 76665543 33 58899998887532 2222334457889999 67
Q ss_pred EEE-EEECCCc--EEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 641 CFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 641 ~l~-Sgs~Dgs--V~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
.|+ +.+.++. |.++|+++++.. .+..+........|+|++++|+..+.. +....|+++|+.+|+..+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSER-----GGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 555 5566775 777788877654 344455566789999999998865432 112478888998887654
No 275
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.0003 Score=86.55 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=115.8
Q ss_pred ecccCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeeccc
Q 000781 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1288)
Q Consensus 504 ~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~ 583 (1288)
+|..|...-+|++|.....+ |+.|+..|.|+++. +.+|.......+|..+|+-+.-
T Consensus 1096 ~frd~~~~fTc~afs~~~~h----L~vG~~~Geik~~n---------------v~sG~~e~s~ncH~SavT~veP----- 1151 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNH----LAVGSHAGEIKIFN---------------VSSGSMEESVNCHQSAVTLVEP----- 1151 (1516)
T ss_pred hhhccccceeeEEeecCCce----EEeeeccceEEEEE---------------ccCccccccccccccccccccc-----
Confidence 35567788899999999888 99999999999954 4466677788899999998874
Q ss_pred CCCCCccCcEEEEEECCC-cEEEEeCC-CCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee
Q 000781 584 TAKGWSFNEVLVSGSMDC-SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~-tI~vWDl~-tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~ 661 (1288)
+-|| +..|.+.+... -..+|++. ++.+.|+|.+. .++.|+.. .+.-+-|..-..+.+||++++.+
T Consensus 1152 s~dg---s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~------~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1152 SVDG---STQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNS------LQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred cCCc---ceeeeeccccCchHHHhccccccCcccccccc----ceeehhhh------HHHHHhcccccceEEEecccCcH
Confidence 5677 23444444444 56799986 56677777643 46777755 22222233334688999999988
Q ss_pred EEEe-cCC---CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 662 ERMF-PGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 662 l~~l-~gH---~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
+.++ .+- ...-++..|+|++.+++- || -+||.+..+.++.|.-.+
T Consensus 1219 l~tylt~~~~~~y~~n~a~FsP~D~LIln-----------dG--vLWDvR~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1219 LQTYLTDTVTSSYSNNLAHFSPCDTLILN-----------DG--VLWDVRIPEAIHRFDQFT 1267 (1516)
T ss_pred HHHhcCcchhhhhhccccccCCCcceEee-----------Cc--eeeeeccHHHHhhhhhhe
Confidence 7663 322 223368899999998881 34 489999887776654433
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.02 E-value=0.84 Score=54.20 Aligned_cols=209 Identities=11% Similarity=0.112 Sum_probs=112.9
Q ss_pred EEEEEEeCCCCeEEEEeC----CCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcc
Q 000781 19 VTATSALTQPPTLYTGGS----DGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1288)
Q Consensus 19 VTala~spdg~~LaTGs~----DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~ 94 (1288)
-+-++++|++++|++..+ +|.|..|++... ....+.+....-....-+.++ .
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i~---~-------------------- 94 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHIA---V-------------------- 94 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEEEEESSSCEEEEE---E--------------------
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeeeeccCCCCcEEEE---E--------------------
Confidence 356888999999999977 579999999851 022333333221112223342 2
Q ss_pred cccccCCCCEEEEEe-CCCeEEEEECCC-CeeEEEeeCC----------CCcCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000781 95 MGKSSLDNGALISAC-TDGVLCVWSRSS-GHCRRRRKLP----------PWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1288)
Q Consensus 95 ~~~~s~d~~~LvS~s-~DG~l~vWdl~~-G~c~~~~~l~----------~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~ 162 (1288)
++++.+|+.+. .+|.|.++++.+ |+........ .....|..-..+.++.+++.+...|
T Consensus 95 ----~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------ 164 (345)
T PF10282_consen 95 ----DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------ 164 (345)
T ss_dssp ----CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------
T ss_pred ----ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------
Confidence 77899998887 589999999985 7665442110 0011122222223444555555544
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEecCCce--EEE--EEeccccccC-CceEEEEEeccCCCCcceEEEEe
Q 000781 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLT--IVQ--TVFHGNLSIG-PWKFMDVVSLGEDMGKHYGLMVD 237 (1288)
Q Consensus 163 ~~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~--vl~--~~~~~~~~~~-~is~l~v~~~~~~~~~~~~lls~ 237 (1288)
...|.+++..... +.. .+.. ..+ ..+-++|.. ++ ....+..
T Consensus 165 --------------------------~D~v~~~~~~~~~~~l~~~~~~~~---~~G~GPRh~~f~p---dg--~~~Yv~~ 210 (345)
T PF10282_consen 165 --------------------------ADRVYVYDIDDDTGKLTPVDSIKV---PPGSGPRHLAFSP---DG--KYAYVVN 210 (345)
T ss_dssp --------------------------TTEEEEEEE-TTS-TEEEEEEEEC---STTSSEEEEEE-T---TS--SEEEEEE
T ss_pred --------------------------CCEEEEEEEeCCCceEEEeecccc---ccCCCCcEEEEcC---Cc--CEEEEec
Confidence 2356666554332 322 2221 222 267777764 22 3466778
Q ss_pred cCCcEEEEeeccCCccccccCCcccccCcccceeEee-cCcc--cCceEEEEecCCCEEEEEecCce---EEee
Q 000781 238 SVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQ-NGVV--EGGHLVSVATCGNIIALVLKDHC---IFRL 305 (1288)
Q Consensus 238 s~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~--~~v~~Vs~s~dg~~i~~v~~~~~---i~~~ 305 (1288)
-.++.+.++++.... +... ....+..+ .... .....|.+++||+++........ +|++
T Consensus 211 e~s~~v~v~~~~~~~--g~~~--------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSD--GSLT--------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTTTEEEEEEEETTT--TEEE--------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CCCCcEEEEeecccC--Ccee--------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 889999999888321 1100 11111111 0111 14578999999998776665543 7877
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.01 E-value=0.15 Score=61.07 Aligned_cols=110 Identities=12% Similarity=-0.029 Sum_probs=75.6
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~ 671 (1288)
..++.++.++.+..||..+|+.+-.... . ......+ . +..+..++.|+.+..+|..+++.+.........
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 5788888999999999999987765542 1 1111111 2 567888889999999999999887655321111
Q ss_pred -cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCc
Q 000781 672 -PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1288)
Q Consensus 672 -V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~ 721 (1288)
...... .++.+++++. ||.|+++|.++|+.+..+..+...
T Consensus 312 ~~ssp~i--~g~~l~~~~~--------~G~l~~~d~~tG~~~~~~~~~~~~ 352 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDF--------EGYLHWLSREDGSFVARLKTDGSG 352 (377)
T ss_pred ccccCEE--ECCEEEEEeC--------CCEEEEEECCCCCEEEEEEcCCCc
Confidence 122222 3567776543 489999999999999888766543
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.99 E-value=0.079 Score=71.63 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=79.7
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEecc---------------CcCEEEEEECCCCCCCC
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH---------------VAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H---------------~~~V~~l~~sp~~~~~~ 637 (1288)
-++++++| .+| .++++.+.++.|++||..++... .+.+. -...+.++++|+
T Consensus 685 P~gVa~dp----~~g----~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd----- 750 (1057)
T PLN02919 685 PWDVCFEP----VNE----KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD----- 750 (1057)
T ss_pred CeEEEEec----CCC----eEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCC-----
Confidence 35678842 144 78888889999999999877542 23221 123456889988
Q ss_pred CCC-EEEEEECCCcEEEEECCCceeEEEecC---------------------CCCCcEEEEEcCCCCEEEEEecCCCccc
Q 000781 638 WSD-CFLSVGEDFSVALASLETLRVERMFPG---------------------HPNYPAKVVWDCPRGYIACLCRDHSRTS 695 (1288)
Q Consensus 638 ~g~-~l~Sgs~DgsV~lWdl~t~~~l~~l~g---------------------H~~~V~~V~~sp~~~~L~tg~~D~sgss 695 (1288)
++ .+++-+.++.|++||++++.......+ ....+..++++++|..+++-.
T Consensus 751 -G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------- 822 (1057)
T PLN02919 751 -LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------- 822 (1057)
T ss_pred -CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-------
Confidence 55 667777889999999987653221110 112356899999998666422
Q ss_pred CCCCeEEEEECCCCcEEE
Q 000781 696 DAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 696 D~DgtV~VWDl~tg~l~~ 713 (1288)
+ +++|++||..++....
T Consensus 823 ~-N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 823 Y-NHKIKKLDPATKRVTT 839 (1057)
T ss_pred C-CCEEEEEECCCCeEEE
Confidence 1 4899999998877553
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.97 E-value=0.0013 Score=71.88 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=69.0
Q ss_pred cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee-EEEecCCCCCcEEEEEcCC
Q 000781 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCP 680 (1288)
Q Consensus 602 tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~-l~~l~gH~~~V~~V~~sp~ 680 (1288)
..+.|+++..+.+..-+.-...|++++-.|.. .+.+++|+.||.+.+||.|.... ...+..|..+++.|.|+|.
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 44567665444332222223449999998884 57899999999999999998743 4567889999999999995
Q ss_pred -CCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 681 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 681 -~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
...|++++. ||.+--||..+
T Consensus 235 ~p~~Lft~se--------dGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSE--------DGSLWHWDAST 255 (319)
T ss_pred CchheeEecC--------CCcEEEEcCCC
Confidence 467776443 59999999865
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.94 E-value=0.059 Score=59.57 Aligned_cols=146 Identities=10% Similarity=-0.056 Sum_probs=98.5
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcC--EEEEEEeecccCCCCCccCcEEEEEECCCcEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~--V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~v 605 (1288)
+..++.|.++++...+. ...+ +.-|... ++.+++ ++|+ +++++.++...|..
T Consensus 131 ~~i~sndht~k~~~~~~-------------~s~~----~~~h~~~~~~ns~~~-----snd~----~~~~~Vgds~~Vf~ 184 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSG-------------DSNK----FAVHNQNLTQNSLHY-----SNDP----SWGSSVGDSRRVFR 184 (344)
T ss_pred eeeccCCcceeEEEEec-------------Cccc----ceeeccccceeeeEE-----cCCC----ceEEEecCCCcceE
Confidence 66667777777755441 1111 1123333 667777 5677 99999999999999
Q ss_pred EeCCCC-c-eEE-EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE-----EecCCCCCcEEEEE
Q 000781 606 WDLGSG-N-LIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-----MFPGHPNYPAKVVW 677 (1288)
Q Consensus 606 WDl~tg-~-~l~-~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~-----~l~gH~~~V~~V~~ 677 (1288)
|.+... + .+. ....-++.=.+..|+.. ...||.+..||++.|||+|...... +-+.|.+.+..+.|
T Consensus 185 y~id~~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F 258 (344)
T KOG4532|consen 185 YAIDDESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF 258 (344)
T ss_pred EEeCCccceeeeeEecccCCCceeeeeccC------cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe
Confidence 988643 3 333 23334445567788877 6899999999999999999754332 22457889999999
Q ss_pred cCCCC---EEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 678 DCPRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 678 sp~~~---~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
++-|. ++++.. -+.+.|-|++++.-.+.
T Consensus 259 sl~g~lDLLf~sEh---------fs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 259 SLYGLLDLLFISEH---------FSRVHVVDTRNYVNHQV 289 (344)
T ss_pred cCCCcceEEEEecC---------cceEEEEEcccCceeeE
Confidence 97543 334322 36899999999865443
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.01 Score=69.30 Aligned_cols=215 Identities=16% Similarity=0.125 Sum_probs=136.2
Q ss_pred EEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcccccc
Q 000781 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1288)
Q Consensus 19 VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1288)
|+.+..+. -+++.+++.||.++.|.-.. .....-+..+..|-+.|..|+.
T Consensus 12 i~hv~~tk-a~fiiqASlDGh~KFWkKs~--isGvEfVKhFraHL~~I~sl~~--------------------------- 61 (558)
T KOG0882|consen 12 ITHVFPTK-AKFIIQASLDGHKKFWKKSR--ISGVEFVKHFRAHLGVILSLAV--------------------------- 61 (558)
T ss_pred eeeEeeeh-hheEEeeecchhhhhcCCCC--ccceeehhhhHHHHHHHHhhhc---------------------------
Confidence 66666553 37999999999999998663 1112333345577787877732
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCce-EEEEeeccCCcccccccccccccccc
Q 000781 99 SLDNGALISACT-DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYV-CIGCCFIDTNQLSDHHSFESVEGDLV 176 (1288)
Q Consensus 99 s~d~~~LvS~s~-DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~-~l~c~g~~~~~~~~~~~~~~~~g~~~ 176 (1288)
+-++.++.|.+. |-.+++.|+.+--.+...++. .-|..+.-........ .+..+.
T Consensus 62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---~lPg~a~wv~skGd~~s~IAVs~-------------------- 118 (558)
T KOG0882|consen 62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV---DLPGFAEWVTSKGDKISLIAVSL-------------------- 118 (558)
T ss_pred cccceeEeeccCcccceeEEEeeccchhhhcccc---cCCCceEEecCCCCeeeeEEeec--------------------
Confidence 667888999888 999999999877666566665 4444433332222111 122221
Q ss_pred cccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCcccc-
Q 000781 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR- 255 (1288)
Q Consensus 177 ~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~- 255 (1288)
.+.+.|.|+|......-...+. .+|..||..+-.... .+.+++...+|++..|..+.. +..
T Consensus 119 ----------~~sg~i~VvD~~~d~~q~~~fk-klH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~-~qfP 180 (558)
T KOG0882|consen 119 ----------FKSGKIFVVDGFGDFCQDGYFK-KLHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGP-FQFP 180 (558)
T ss_pred ----------ccCCCcEEECCcCCcCccceec-ccccCceEEEEeecc------ccceeeccccceeEeecCCCc-ccCc
Confidence 2456788888866543333333 247788888888765 568899999999999998851 111
Q ss_pred --------ccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCccccee
Q 000781 256 --------EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEI 315 (1288)
Q Consensus 256 --------~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~ 315 (1288)
+....+|+- .++ ..-..++-+++++..+.....+.. +|+. ++++++.++
T Consensus 181 r~~l~~~~K~eTdLy~f------~K~----Kt~pts~Efsp~g~qistl~~DrkVR~F~~-KtGklvqei 239 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGF------PKA----KTEPTSFEFSPDGAQISTLNPDRKVRGFVF-KTGKLVQEI 239 (558)
T ss_pred cccccccccccchhhcc------ccc----ccCccceEEccccCcccccCcccEEEEEEe-ccchhhhhh
Confidence 112222221 111 112357889999999998887766 5555 666666555
No 282
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0016 Score=75.72 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=116.5
Q ss_pred CCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCC
Q 000781 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1288)
Q Consensus 508 h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG 587 (1288)
|++.|+.+ +.+-..+ ++.++.||.++.|.-.. +.--+.+..++.|.+.|..++. +.||
T Consensus 8 hrd~i~hv-~~tka~f----iiqASlDGh~KFWkKs~------------isGvEfVKhFraHL~~I~sl~~-----S~dg 65 (558)
T KOG0882|consen 8 HRDVITHV-FPTKAKF----IIQASLDGHKKFWKKSR------------ISGVEFVKHFRAHLGVILSLAV-----SYDG 65 (558)
T ss_pred ccceeeeE-eeehhhe----EEeeecchhhhhcCCCC------------ccceeehhhhHHHHHHHHhhhc-----cccc
Confidence 67777763 3344455 89999999999854221 1112245566777777777776 3455
Q ss_pred CccCcEEEEEEC-CCcEEEEeCCCC----------------------------------------------c-eEEEE-e
Q 000781 588 WSFNEVLVSGSM-DCSIRIWDLGSG----------------------------------------------N-LITVM-H 618 (1288)
Q Consensus 588 ~~~~~~L~SGs~-D~tI~vWDl~tg----------------------------------------------~-~l~~~-~ 618 (1288)
-++.|++. |..++++|+..- . ...-+ .
T Consensus 66 ----~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 66 ----WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ----eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 67777666 888888776521 0 01111 2
Q ss_pred ccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC------cee---------EEEecCCCCCcEEEEEcCCCCE
Q 000781 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET------LRV---------ERMFPGHPNYPAKVVWDCPRGY 683 (1288)
Q Consensus 619 ~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t------~~~---------l~~l~gH~~~V~~V~~sp~~~~ 683 (1288)
-|..+|.++.++|. +++++|....|.|.-|..+. .+. +..+......+.++.|+|++..
T Consensus 142 lH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cccCceEEEEeecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 48889999999998 89999999999999999873 111 1223334456789999999999
Q ss_pred EEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 684 L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
+.+-. .|..|++++.++|.+++.+.
T Consensus 216 istl~--------~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 216 ISTLN--------PDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccccC--------cccEEEEEEeccchhhhhhh
Confidence 98532 36899999999999877653
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.93 E-value=0.026 Score=68.61 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred EEEeCCCCceEE----EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcC
Q 000781 604 RIWDLGSGNLIT----VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1288)
Q Consensus 604 ~vWDl~tg~~l~----~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp 679 (1288)
++|++...+..+ ++ .....|.+++++|+ .+.++.|+.||+|.+||...+... +..+.-.++.++|+|
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSPS------EDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCcc------cceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC
Confidence 456665444221 22 36778999999999 789999999999999999776433 333445678999999
Q ss_pred CCCEEEEEecCCCcccCCCCeEEEEECCCCcE
Q 000781 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 680 ~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l 711 (1288)
+|.++++|+.. |.+.+||+--...
T Consensus 310 ~gai~~V~s~q--------GelQ~FD~ALspi 333 (545)
T PF11768_consen 310 DGAIFVVGSEQ--------GELQCFDMALSPI 333 (545)
T ss_pred CCcEEEEEcCC--------ceEEEEEeecCcc
Confidence 99999976533 8999999865443
No 284
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.013 Score=72.78 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=104.5
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 527 ~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
.++.|.++|.+++...+. .+ .+...|... ..+| .+++|||.||+|.|-
T Consensus 51 ~~~~GtH~g~v~~~~~~~----------------~~-~~~~~~s~~-----------~~~G----ey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQG----------------NP-KTNFDHSSS-----------ILEG----EYVASCSDDGKVVIG 98 (846)
T ss_pred eeeeccccceEEEEecCC----------------cc-ccccccccc-----------ccCC----ceEEEecCCCcEEEe
Confidence 399999999999965441 12 222234332 1356 999999999999999
Q ss_pred eCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC---ceeEEEecCCCCCcEEEEEcCCCCE
Q 000781 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET---LRVERMFPGHPNYPAKVVWDCPRGY 683 (1288)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t---~~~l~~l~gH~~~V~~V~~sp~~~~ 683 (1288)
.+.+.+..+++. ...++.+++++|+- .+.....+++|+.-| +.++.-+- ...+ .+..-.++|.+|.|+ |++
T Consensus 99 sl~~~~~~~~~d-f~rpiksial~Pd~-~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~l 172 (846)
T KOG2066|consen 99 SLFTDDEITQYD-FKRPIKSIALHPDF-SRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNL 172 (846)
T ss_pred eccCCccceeEe-cCCcceeEEeccch-hhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcE
Confidence 999988777764 34799999999982 223356799999988 76665332 2222 344445799999998 667
Q ss_pred EEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCce
Q 000781 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1288)
Q Consensus 684 L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~v 722 (1288)
++-+. |--|+|+|+.+++.+..+.-....+
T Consensus 173 IAWan---------d~Gv~vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 173 IAWAN---------DDGVKVYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred EEEec---------CCCcEEEeccccceeeccCCCCCCC
Confidence 77432 3579999999998887766444333
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.88 E-value=0.068 Score=62.93 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=103.2
Q ss_pred ecCCcCEEEEEEeecccCCCCCccCcEEEEEECCC-cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEE
Q 000781 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1288)
Q Consensus 567 ~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~-tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sg 645 (1288)
.+|.+.|.-..+. .++ +-++-|..|+ .+-|+|..+++. .++...-+.|.++..+|+ |+.++.+
T Consensus 356 v~~~~~VrY~r~~-----~~~----e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~d------GK~~vva 419 (668)
T COG4946 356 VGKKGGVRYRRIQ-----VDP----EGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPD------GKKVVVA 419 (668)
T ss_pred cCCCCceEEEEEc-----cCC----cceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCC------CcEEEEE
Confidence 4788888887773 344 5688899999 899999988874 556667789999999999 8889888
Q ss_pred ECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 646 s~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
-....+.+.|+.++.....=+...+-|+...|+|++++++-+.-+ |-.- ..|+++|+.+++....
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~t--q~Iklydm~~~Kiy~v 484 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYYT--QSIKLYDMDGGKIYDV 484 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--ceee--eeEEEEecCCCeEEEe
Confidence 888999999999998866555566779999999999999987654 3332 6899999998876543
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.77 E-value=0.063 Score=72.58 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=82.3
Q ss_pred CEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec-------------c--------CcCEEEEEEC
Q 000781 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------------H--------VAPVRQIILS 630 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~-------------H--------~~~V~~l~~s 630 (1288)
..+.++++ ||| +.++++-+.++.|++||+.++.......+ + -..-..++++
T Consensus 741 ~P~GIavs-----pdG---~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 741 QPSGISLS-----PDL---KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred CccEEEEe-----CCC---CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 35568884 576 23777788889999999987653211100 0 0123577888
Q ss_pred CCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec-------------CCCCCcEEEEEcCCCCEEEEEecCCCcccCC
Q 000781 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1288)
Q Consensus 631 p~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~-------------gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~ 697 (1288)
++ |+.+++-..++.|++||..++....... ++...+..|+++++|+.+++-+ .
T Consensus 813 ~d------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~-- 878 (1057)
T PLN02919 813 KD------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------N-- 878 (1057)
T ss_pred CC------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------C--
Confidence 87 7889999999999999999877653321 1223578999999998766422 1
Q ss_pred CCeEEEEECCCCcE
Q 000781 698 VDVLFIWDVKTGAR 711 (1288)
Q Consensus 698 DgtV~VWDl~tg~l 711 (1288)
+++|++||+++++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 48999999999875
No 287
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0015 Score=80.60 Aligned_cols=151 Identities=20% Similarity=0.215 Sum_probs=106.6
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
+.++|+.|+...+|++|+ .+. ++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.+ |..
T Consensus 1093 ~w~~frd~~~~fTc~afs-----~~~----~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d------gs~ 1157 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFS-----GGT----NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD------GST 1157 (1516)
T ss_pred cchhhhccccceeeEEee-----cCC----ceEEeeeccceEEEEEccCccccccccccccccccccccCC------cce
Confidence 556788999999999994 333 89999999999999999999999999999999999988887 565
Q ss_pred EEEEE-CCC-cEEEEECCC-ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE-EeC
Q 000781 642 FLSVG-EDF-SVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRG 717 (1288)
Q Consensus 642 l~Sgs-~Dg-sV~lWdl~t-~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~-l~G 717 (1288)
.++.+ ... -..+|++.. +...++|.+. .++.|+..-.+-+.|+. + ..+.|||++|+..+.+ +++
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~-----~---d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTE-----A---DDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccccc----ceeehhhhHHHHHhccc-----c---cceEEEecccCcHHHHhcCc
Confidence 54443 333 578999864 4555566533 47888876555554432 2 4789999999988776 443
Q ss_pred CCCc---eEEeeeecCccceeeecc
Q 000781 718 TASH---SMFDHFCKGISMNSISGS 739 (1288)
Q Consensus 718 H~~~---vi~~~~~~~~~~~~~sgs 739 (1288)
.-+. -.+++|++.......+|.
T Consensus 1226 ~~~~~y~~n~a~FsP~D~LIlndGv 1250 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLILNDGV 1250 (1516)
T ss_pred chhhhhhccccccCCCcceEeeCce
Confidence 2211 133445554443344443
No 288
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.63 E-value=0.011 Score=74.05 Aligned_cols=138 Identities=14% Similarity=0.193 Sum_probs=106.2
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEE---------
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS--------- 598 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs--------- 598 (1288)
+.+|...|+|.+.+ .++.+.++++..|++.|.++..+ | +.|+|+|
T Consensus 190 lf~G~t~G~V~LrD---------------~~s~~~iht~~aHs~siSDfDv~-------G----NlLitCG~S~R~~~l~ 243 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRD---------------PNSFETIHTFDAHSGSISDFDVQ-------G----NLLITCGYSMRRYNLA 243 (1118)
T ss_pred EEeecccceEEeec---------------CCcCceeeeeeccccceeeeecc-------C----CeEEEeeccccccccc
Confidence 89999999999943 55677899999999999998873 4 8899887
Q ss_pred CCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEEC---CCc-eeEEEecCCCCCcEE
Q 000781 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL---ETL-RVERMFPGHPNYPAK 674 (1288)
Q Consensus 599 ~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl---~t~-~~l~~l~gH~~~V~~ 674 (1288)
.|.-|+|||++..+.+.-+.-|.++ .-+.|.|.- ...++.++..|...+-|. ... .-+..+....+.+..
T Consensus 244 ~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl-----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 244 MDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL-----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred ccchhhhhhhhhhhccCCcccccCc-hhhhhcccc-----cceEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 4667899999988877777667666 556777763 467888889999999983 322 123334334456889
Q ss_pred EEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 675 V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
..++++++.++.| |.+|.|.+|-
T Consensus 318 fDiSsn~~alafg--------d~~g~v~~wa 340 (1118)
T KOG1275|consen 318 FDISSNGDALAFG--------DHEGHVNLWA 340 (1118)
T ss_pred EEecCCCceEEEe--------cccCcEeeec
Confidence 9999999999864 4458999996
No 289
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.59 E-value=2.2 Score=51.11 Aligned_cols=95 Identities=12% Similarity=-0.071 Sum_probs=63.9
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCc-CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~-~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~ 670 (1288)
..++.++.|+.+..+|..+|+.+-.+....+ ....... . +..++.++.||.|.++|.++++.+..++.+..
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~------g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--V------GGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--E------CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 5778888999999999999987765532111 1111111 1 56889999999999999999999988876654
Q ss_pred CcE-EEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 671 YPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 671 ~V~-~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
.+. .-.+. + +.|++++. ||.|+.+
T Consensus 352 ~~~~sp~~~-~-~~l~v~~~--------dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-G-DGLLVQTR--------DGDLYAF 376 (377)
T ss_pred ccccCCEEE-C-CEEEEEeC--------CceEEEe
Confidence 332 22333 2 34555443 3788765
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.51 E-value=0.087 Score=58.29 Aligned_cols=145 Identities=10% Similarity=-0.077 Sum_probs=92.7
Q ss_pred EEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEE-EEecCCcCEEEEEEeecccCCCCCcc
Q 000781 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ-YFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1288)
Q Consensus 512 Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~-~l~gH~~~V~~L~~~p~~~SpdG~~~ 590 (1288)
+.++.+..+..| +++-+....|..+..|... ....+ +...-+..-.|..|+ ..
T Consensus 161 ~ns~~~snd~~~----~~~Vgds~~Vf~y~id~~s-------------ey~~~~~~a~t~D~gF~~S~s-----~~---- 214 (344)
T KOG4532|consen 161 QNSLHYSNDPSW----GSSVGDSRRVFRYAIDDES-------------EYIENIYEAPTSDHGFYNSFS-----EN---- 214 (344)
T ss_pred eeeeEEcCCCce----EEEecCCCcceEEEeCCcc-------------ceeeeeEecccCCCceeeeec-----cC----
Confidence 677777777777 7777777778776655221 11222 223334455677774 22
Q ss_pred CcEEEEEECCCcEEEEeCCCCceEEEE-----eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEe
Q 000781 591 NEVLVSGSMDCSIRIWDLGSGNLITVM-----HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1288)
Q Consensus 591 ~~~L~SGs~D~tI~vWDl~tg~~l~~~-----~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l 665 (1288)
+..+|++.+||++.|||++.....+.+ ..|.|.++.+.|+|-+. .+++.-.-.-+.+.+.|+|+++-.+.+
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----LDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc----ceEEEEecCcceEEEEEcccCceeeEE
Confidence 378999999999999999865533322 34899999999998643 244444445578999999998655443
Q ss_pred c-------CCCCC-cEEEEEcCCCCEEEE
Q 000781 666 P-------GHPNY-PAKVVWDCPRGYIAC 686 (1288)
Q Consensus 666 ~-------gH~~~-V~~V~~sp~~~~L~t 686 (1288)
. .|... +..-.|+.++....+
T Consensus 291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 291 VIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred ecCccccccccccccccccccCCCccccc
Confidence 2 23222 555556555554443
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.059 Score=67.31 Aligned_cols=153 Identities=15% Similarity=0.162 Sum_probs=102.0
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++++.||.|.|.... +.+...++. -..++..++++|... +...+.+++||.-| +.++.
T Consensus 86 ~asCS~DGkv~I~sl~---------------~~~~~~~~d-f~rpiksial~Pd~~----~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLF---------------TDDEITQYD-FKRPIKSIALHPDFS----RQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred EEEecCCCcEEEeecc---------------CCccceeEe-cCCcceeEEeccchh----hhhhhheeecCcce-EEEeh
Confidence 8999999999994422 222222222 346889999987532 22347899999998 76765
Q ss_pred CCC-CceEE-EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC------CcEEEEEcC
Q 000781 608 LGS-GNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------YPAKVVWDC 679 (1288)
Q Consensus 608 l~t-g~~l~-~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~------~V~~V~~sp 679 (1288)
-+- |.... .+..-.|+|.++.|. |+++|-++++| |++||..+++.+..++.... ....+.|.+
T Consensus 145 r~wlgnk~~v~l~~~eG~I~~i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~ 215 (846)
T KOG2066|consen 145 RNWLGNKDSVVLSEGEGPIHSIKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD 215 (846)
T ss_pred hhhhcCccceeeecCccceEEEEec--------CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC
Confidence 332 11111 355667899999997 67888888777 89999999888766643222 345789988
Q ss_pred CCCEEEEEecCCCcccCCCCeEEEEECCCCc--EEEEEeCCCC
Q 000781 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTAS 720 (1288)
Q Consensus 680 ~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~--l~~~l~GH~~ 720 (1288)
+...++ | =+| +|+|..++.+. ..+++.+|..
T Consensus 216 ~~~LVI-G------W~d---~v~i~~I~~~~s~~a~~~~~~~~ 248 (846)
T KOG2066|consen 216 EDRLVI-G------WGD---SVKICSIKKRSSSEARSFRLPSL 248 (846)
T ss_pred CCeEEE-e------cCC---eEEEEEEecccccccccccCCcc
Confidence 776666 3 333 89999998432 2344555554
No 292
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.35 E-value=0.008 Score=67.66 Aligned_cols=111 Identities=15% Similarity=0.058 Sum_probs=86.2
Q ss_pred CCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE
Q 000781 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~ 663 (1288)
||+| +++++.+.- .+-|-|.++-+..+.|.. -+.|.-+.|..+. ...++....|+.|.+|++...+--.
T Consensus 17 Sp~g----~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads-----~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 17 SPCG----NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADS-----CHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred CCCC----Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccc-----eeeeeeeeccceEEEEEeecceeEE
Confidence 6899 999999977 777888888776555543 4567788898773 3466777889999999999887777
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 664 ~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
.+..-...+..+.|+|+|+.++. ++.-|-.|.||.+.|....
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~-------tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILL-------TSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred EeccCCCcceeeeECCCcceEee-------eecceeEEEEEEeccceeE
Confidence 77666678999999999988774 3334689999999876543
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.33 E-value=0.16 Score=59.91 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=106.0
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEcCC-cEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCC
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~DG-~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~Sp 585 (1288)
+|.+.|.=..+..+ |++++.|..|| .+.|.+ ..++ ....+.+.-+.|.++.. ++
T Consensus 357 ~~~~~VrY~r~~~~----~e~~vigt~dgD~l~iyd---------------~~~~-e~kr~e~~lg~I~av~v-----s~ 411 (668)
T COG4946 357 GKKGGVRYRRIQVD----PEGDVIGTNDGDKLGIYD---------------KDGG-EVKRIEKDLGNIEAVKV-----SP 411 (668)
T ss_pred CCCCceEEEEEccC----CcceEEeccCCceEEEEe---------------cCCc-eEEEeeCCccceEEEEE-----cC
Confidence 45555654333333 33489999999 666633 2233 34566677789999998 57
Q ss_pred CCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC----CcEEEEECCCcee
Q 000781 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED----FSVALASLETLRV 661 (1288)
Q Consensus 586 dG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D----gsV~lWdl~t~~~ 661 (1288)
|| +.++.+...+.+.+.|+.+|+....=+...+-|+.+.|+|+ +..+|-+--+ ..|+++|+.+++.
T Consensus 412 dG----K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 412 DG----KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CC----cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC------ceeEEEecCcceeeeeEEEEecCCCeE
Confidence 88 89999999999999999999976666667789999999999 7888876555 5789999998887
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEe
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~ 688 (1288)
...-. ..+.=.+=+|+|++++|.--+
T Consensus 482 y~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecC-CcccccCcccCCCCcEEEEEe
Confidence 54332 112223568999999988543
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.31 E-value=0.022 Score=71.57 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=102.3
Q ss_pred CCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCcccccccCCCCEE
Q 000781 26 TQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGAL 105 (1288)
Q Consensus 26 pdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~L 105 (1288)
.+++.|.+|...|+|.|-|..+ ..+++.+..|++.|.++ +-.|+.|
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s-----~~~iht~~aHs~siSDf-----------------------------Dv~GNlL 230 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNS-----FETIHTFDAHSGSISDF-----------------------------DVQGNLL 230 (1118)
T ss_pred ecCcEEEeecccceEEeecCCc-----Cceeeeeeccccceeee-----------------------------eccCCeE
Confidence 3679999999999999999996 78899999999999888 4467788
Q ss_pred EEEe---------CCCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccc
Q 000781 106 ISAC---------TDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1288)
Q Consensus 106 vS~s---------~DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~~~~~~~g~~~ 176 (1288)
+|.+ .|..|+|||+..=+.+.-+..+ ..|..++.+|.-....+|..+.
T Consensus 231 itCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~s-------------------- 287 (1118)
T KOG1275|consen 231 ITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQS-------------------- 287 (1118)
T ss_pred EEeecccccccccccchhhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecc--------------------
Confidence 8876 3778999999876655545555 7788888888766555554433
Q ss_pred cccccCCCCCCCCceEEEEecCCce---EEEEEeccccccCC-ceEEEEEeccCCCCcceEEEEecCCcEEEEee
Q 000781 177 SEDKEVPMKNPPKCTLVIVDTYGLT---IVQTVFHGNLSIGP-WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1288)
Q Consensus 177 ~~d~~~~~~~~~~~~I~i~D~~tl~---vl~~~~~~~~~~~~-is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~ 247 (1288)
+...+.|+.++. .-..+++ -.++ +++++++.. .+.++-+-.+|.+-+|.
T Consensus 288 -------------Gq~q~vd~~~lsNP~~~~~~v~---p~~s~i~~fDiSsn------~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 -------------GQFQFVDTATLSNPPAGVKMVN---PNGSGISAFDISSN------GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -------------cceeeccccccCCCccceeEEc---cCCCcceeEEecCC------CceEEEecccCcEeeec
Confidence 234444543321 0011111 1223 888888865 56888899999999998
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.35 Score=61.19 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
.+++++++..+... +++|..||.|....-|.... .+........-.++||.|.+. .||
T Consensus 126 ~p~s~l~Vs~~l~~----Iv~Gf~nG~V~~~~GDi~RD-----------rgsr~~~~~~~~~pITgL~~~-----~d~-- 183 (933)
T KOG2114|consen 126 SPASSLAVSEDLKT----IVCGFTNGLVICYKGDILRD-----------RGSRQDYSHRGKEPITGLALR-----SDG-- 183 (933)
T ss_pred CcceEEEEEccccE----EEEEecCcEEEEEcCcchhc-----------cccceeeeccCCCCceeeEEe-----cCC--
Confidence 34455555555555 99999999999976553321 111112222235789999994 344
Q ss_pred cCcEEEEEECCCcEEEEeCCCCc-eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec-C
Q 000781 590 FNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-G 667 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~tg~-~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~-g 667 (1288)
..++-...-..|.+|.+.... ....+..|+.+++|..+++.. .+.+|++ +..+.+||....++...|. |
T Consensus 184 --~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-----~qfIca~--~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 184 --KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-----YQFICAG--SEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred --ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC-----ccEEEec--CceEEEEcCCCcceeeeecCC
Confidence 332222334578999987333 245588889999999999872 2344433 4579999998777777777 7
Q ss_pred CCCC
Q 000781 668 HPNY 671 (1288)
Q Consensus 668 H~~~ 671 (1288)
|...
T Consensus 255 ~kk~ 258 (933)
T KOG2114|consen 255 EKKE 258 (933)
T ss_pred CeEE
Confidence 7643
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.36 Score=61.08 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=87.8
Q ss_pred CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC----CCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEE
Q 000781 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG----SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1288)
Q Consensus 570 ~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~----tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sg 645 (1288)
..++.+++.+. + -+.+|.|-.||.|..+.=+ .|....-...-.++|+.+.+..+ +..++-+
T Consensus 125 ~~p~s~l~Vs~-----~----l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d------~~s~lFv 189 (933)
T KOG2114|consen 125 PSPASSLAVSE-----D----LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD------GKSVLFV 189 (933)
T ss_pred CCcceEEEEEc-----c----ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC------CceeEEE
Confidence 34578888852 2 3789999999999888421 12222222234579999999888 5554555
Q ss_pred ECCCcEEEEECCCcee-EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe-CCCCce
Q 000781 646 GEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHS 722 (1288)
Q Consensus 646 s~DgsV~lWdl~t~~~-l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~-GH~~~v 722 (1288)
..-..|.+|.+....+ ...+..|...+.|..+++....++|++. .-+++||......--.+. ||.-..
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCCcceeeeecCCCeEEE
Confidence 6667899999984443 4457777778899999987665665432 489999987655545555 776444
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.25 E-value=0.016 Score=70.52 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCc
Q 000781 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1288)
Q Consensus 14 ~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~ 93 (1288)
|-...|+|.+++|+.+.|+.|++||.|++||... .+..+.-+.-..+.+ +.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-------~~t~~~ka~~~P~~i---aW------------------- 307 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-------GVTLLAKAEFIPTLI---AW------------------- 307 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCC-------CeeeeeeecccceEE---EE-------------------
Confidence 5666899999999999999999999999999984 122233334445555 34
Q ss_pred ccccccCCCCEEEEEeCCCeEEEEECCCCee
Q 000781 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHC 124 (1288)
Q Consensus 94 ~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c 124 (1288)
.|++..++.+++-|+|.+||+.-..+
T Consensus 308 -----Hp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 308 -----HPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred -----cCCCcEEEEEcCCceEEEEEeecCcc
Confidence 78899999999999999999975443
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.18 E-value=0.89 Score=53.98 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=53.2
Q ss_pred EeCCCCeEEEEeC----------CCCEEEEEccCCCCCcceeeEEee-c--------cccceEEeEeccccccccCcccc
Q 000781 24 ALTQPPTLYTGGS----------DGSILWWSFSDSSYSEIKPVAMLC-G--------HSAPIADLSICYPAMVSRDGKAE 84 (1288)
Q Consensus 24 ~spdg~~LaTGs~----------DG~I~lWdl~~~~~~~~~p~~~l~-G--------H~~~Vt~L~~~s~~~~~~~~~~~ 84 (1288)
+||||+.|+.+.. +..|.+||..+ .+++..+. + -......+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~l--------------- 112 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-----HLPIADIELPEGPRFLVGTYPWMTSL--------------- 112 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-----CcEEeEEccCCCchhhccCccceEEE---------------
Confidence 9999999998755 78999999997 33333222 1 11111222
Q ss_pred cccccccCcccccccCCCCEEEEEe-C-CCeEEEEECCCCeeEEEeeCC
Q 000781 85 HWKAENSSNVMGKSSLDNGALISAC-T-DGVLCVWSRSSGHCRRRRKLP 131 (1288)
Q Consensus 85 ~~~~~~~~~~~~~~s~d~~~LvS~s-~-DG~l~vWdl~~G~c~~~~~l~ 131 (1288)
++|+++|.... . +..|.|.|+.+++.+.....+
T Consensus 113 --------------s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 113 --------------TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred --------------CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 88999888665 3 799999999999999887664
No 299
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.17 E-value=0.014 Score=43.00 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=34.8
Q ss_pred CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE
Q 000781 611 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 611 g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd 655 (1288)
++++..+..|...|+++.|.|. +..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPD------GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCC------CCEEEEecCCCeEEEcC
Confidence 4567788889999999999998 78999999999999996
No 300
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.04 E-value=0.018 Score=42.33 Aligned_cols=38 Identities=37% Similarity=0.573 Sum_probs=32.7
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++...+.+|...|+++.|+ +++ +.+++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~-----~~~----~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFS-----PDG----KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEEC-----CCC----CEEEEecCCCeEEEcC
Confidence 4677888999999999995 344 7999999999999996
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.02 E-value=0.019 Score=64.24 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=89.4
Q ss_pred ecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc---eEEEEecc-----CcCEEEEEECCCCCCCCC
Q 000781 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 567 ~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~---~l~~~~~H-----~~~V~~l~~sp~~~~~~~ 638 (1288)
..|.-.++++.|+ .|. +.++|+ +|-.|.+|++.-.. -+.-++.| +.-|++..|+|..
T Consensus 169 NaH~yhiNSiS~N-----sD~----et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----- 233 (460)
T COG5170 169 NAHPYHINSISFN-----SDK----ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----- 233 (460)
T ss_pred ccceeEeeeeeec-----Cch----heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-----
Confidence 5788899999994 233 666664 68899999986432 12223334 3468889999985
Q ss_pred CCEEEEEECCCcEEEEECCCce-----e-EE----------EecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEE
Q 000781 639 SDCFLSVGEDFSVALASLETLR-----V-ER----------MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~~-----~-l~----------~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~ 702 (1288)
...+.-.+..|.|++-|+|... + +. -|.+-...|..+.|++.|+|+++-.. -+|+
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvk 304 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVK 304 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEE
Confidence 3677788889999999998431 1 00 11122346789999999999984222 5999
Q ss_pred EEECCC-CcEEEEEeCCC
Q 000781 703 IWDVKT-GARERVLRGTA 719 (1288)
Q Consensus 703 VWDl~t-g~l~~~l~GH~ 719 (1288)
|||.+. ..+++++.-|.
T Consensus 305 iwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EEecccccCCceeechHH
Confidence 999975 56777776663
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.94 E-value=0.45 Score=63.48 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=104.5
Q ss_pred CCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCC
Q 000781 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1288)
Q Consensus 508 h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG 587 (1288)
..+.|.++.|..+..- ++++..+|+|.+...+... +....+.+..+ ...|.|++| |||+
T Consensus 74 ~~~~ivs~~yl~d~~~----l~~~~~~Gdi~~~~~~~~~---------~~~~~E~VG~v---d~GI~a~~W-----SPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES----LCIALASGDIILVREDPDP---------DEDEIEIVGSV---DSGILAASW-----SPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc----EEEEECCceEEEEEccCCC---------CCceeEEEEEE---cCcEEEEEE-----CCCc
Confidence 3468888888888877 9999999999997655311 11112233333 578999999 5787
Q ss_pred CccCcEEEEEECCCcEEEEeCC-----------------------CCceEEEEec------------------------c
Q 000781 588 WSFNEVLVSGSMDCSIRIWDLG-----------------------SGNLITVMHH------------------------H 620 (1288)
Q Consensus 588 ~~~~~~L~SGs~D~tI~vWDl~-----------------------tg~~l~~~~~------------------------H 620 (1288)
+.|+-...++++.+-+-. -|+.-..|+| +
T Consensus 133 ----Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~ 208 (928)
T PF04762_consen 133 ----ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW 208 (928)
T ss_pred ----CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence 888888888888775422 0111122322 1
Q ss_pred CcCEEEEEECCCCCCCCCCCEEEEEEC----C--CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcc
Q 000781 621 VAPVRQIILSPPQTEHPWSDCFLSVGE----D--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694 (1288)
Q Consensus 621 ~~~V~~l~~sp~~~~~~~g~~l~Sgs~----D--gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgs 694 (1288)
.+.-..++|-.| |++||..+- + +.+|||+-+ |....+-..-.+--.+++|.|.|+++++...-
T Consensus 209 dd~~~~ISWRGD------G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~---- 277 (928)
T PF04762_consen 209 DDGRVRISWRGD------GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL---- 277 (928)
T ss_pred CCCceEEEECCC------CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc----
Confidence 123345667666 899988764 2 689999965 65444333222222489999999999976542
Q ss_pred cCCCCeEEEEECCCCcE
Q 000781 695 SDAVDVLFIWDVKTGAR 711 (1288)
Q Consensus 695 sD~DgtV~VWDl~tg~l 711 (1288)
.+ ...|.+|.- .|..
T Consensus 278 ~~-~~~VvFfEr-NGLr 292 (928)
T PF04762_consen 278 PD-RHDVVFFER-NGLR 292 (928)
T ss_pred CC-CcEEEEEec-CCcE
Confidence 22 256777763 3443
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.017 Score=66.76 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=75.9
Q ss_pred EEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCC
Q 000781 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1288)
Q Consensus 603 I~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~ 682 (1288)
+++.+..+.+...-+.+|...|+.++|+|.+ ..++..++.+.+|+|.|+++..++..+..| ..+++++|+-++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 6666666666566677889999999999983 237889999999999999999999999888 6999999988775
Q ss_pred EEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 683 ~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
..+- +++..|.|+|+|++.-
T Consensus 249 h~IY-------aGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 249 HVIY-------AGLQNGMVLVYDMRQP 268 (463)
T ss_pred ceeE-------EeccCceEEEEEccCC
Confidence 5553 2344599999999864
No 304
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.84 E-value=0.41 Score=56.76 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=80.0
Q ss_pred CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE-EEEEE---------CCCcEEEEECCCceeEEEecCC--
Q 000781 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC-FLSVG---------EDFSVALASLETLRVERMFPGH-- 668 (1288)
Q Consensus 601 ~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~-l~Sgs---------~DgsV~lWdl~t~~~l~~l~gH-- 668 (1288)
++|.+.|..+++.+..+..-..+-. + ++|+ ++. .++.+ .+..|.+||..+++.+..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD------g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD------GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC------CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 8999999999999888875544443 4 8999 554 44445 6899999999999999887631
Q ss_pred -----CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC
Q 000781 669 -----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1288)
Q Consensus 669 -----~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH 718 (1288)
......++++|+|++|++... +-+..|.|.|+.+++.+..+.--
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~------~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQF------SPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecC------CCCCEEEEEECCCCcEEEEEeCC
Confidence 123458999999999997442 22589999999999999887643
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.60 E-value=0.3 Score=53.98 Aligned_cols=112 Identities=13% Similarity=-0.030 Sum_probs=76.5
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEe-cCCC-
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHP- 669 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l-~gH~- 669 (1288)
..++.++.++.+..||..+|+.+.++.. .+++...... . +..++.++.|+.+..+|.++|+.+... ....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~------~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-D------GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-E------TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-c------ccccccccceeeeEecccCCcceeeeecccccc
Confidence 6788889999999999999998877765 2221111111 1 456777778999999999999998774 3221
Q ss_pred --CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCC
Q 000781 670 --NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1288)
Q Consensus 670 --~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~ 719 (1288)
...........++.+++++. ++.|+.+|+++|+.+.....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeecCC
Confidence 11112222223777776443 3899999999999998887755
No 306
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.46 E-value=0.62 Score=56.89 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=79.3
Q ss_pred CEEEEEEeecccCCCCCccCc-EEEEEEC---CCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEE-EEEE
Q 000781 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVG 646 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~-~L~SGs~---D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l-~Sgs 646 (1288)
......| +||| + .++-.+. +..|.++|+.+|+..... ...+.+....|+|+ |+.+ ++.+
T Consensus 189 ~~~~p~w-----SpDG----~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPD------G~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKW-----ANKE----QTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKD------GSKLLLTMA 252 (419)
T ss_pred CeEeEEE-----CCCC----CcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCC------CCEEEEEEc
Confidence 6677888 5788 5 3553333 356899999888754433 35566777889999 6544 4444
Q ss_pred CC--CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEE
Q 000781 647 ED--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1288)
Q Consensus 647 ~D--gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l 715 (1288)
.+ ..|.++|+.+++..+ +..+......-.|+|||+.|+..+.. .+ ...|++.|+.+|+..+..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr----~g-~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDR----LG-YPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECC----CC-CceEEEEECCCCCeEeCc
Confidence 44 567777888776543 43343333456899999988864422 11 137999999988875543
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.36 E-value=2.2 Score=47.82 Aligned_cols=133 Identities=18% Similarity=0.180 Sum_probs=87.4
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECC--------CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D--------~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
.....+.+++ .++| ++.++.... +.|..++.. ++... +...-...+.++|+|+ ++
T Consensus 84 ~~~~~ND~~v-----d~~G----~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~d------g~ 146 (246)
T PF08450_consen 84 PFNRPNDVAV-----DPDG----NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPD------GK 146 (246)
T ss_dssp CTEEEEEEEE------TTS-----EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETT------SS
T ss_pred ccCCCceEEE-----cCCC----CEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCc------ch
Confidence 3467889999 5788 777776654 457777776 55433 3334566799999999 66
Q ss_pred E-EEEEECCCcEEEEECCC--c-----eeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 641 C-FLSVGEDFSVALASLET--L-----RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 641 ~-l~Sgs~DgsV~lWdl~t--~-----~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
. +++-+..+.|..+++.. . +....+..-.+.+-.++++.+|++.++.. + .+.|.++|.+ |+++
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-------~-~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-------G-GGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-------T-TTEEEEEETT-SCEE
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-------C-CCEEEEECCC-ccEE
Confidence 4 45677888999999863 2 12223333333477999999998766422 1 2799999987 9998
Q ss_pred EEEeCCCCceEEeee
Q 000781 713 RVLRGTASHSMFDHF 727 (1288)
Q Consensus 713 ~~l~GH~~~vi~~~~ 727 (1288)
..+.-....++.+.|
T Consensus 218 ~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 218 REIELPVPRPTNCAF 232 (246)
T ss_dssp EEEE-SSSSEEEEEE
T ss_pred EEEcCCCCCEEEEEE
Confidence 888766556666555
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.34 E-value=3.7 Score=46.50 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=38.2
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP 623 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~ 623 (1288)
-...|..+.. |||| +.||+...+|.|.+|++.+-++.+.+..+..|
T Consensus 228 ~~d~i~kmSl-----SPdg----~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 228 EQDGIFKMSL-----SPDG----SLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred CCCceEEEEE-----CCCC----CEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 3567888888 6899 99999999999999999988888877665443
No 309
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.26 E-value=0.94 Score=44.54 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=65.2
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEE
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~ 652 (1288)
|+++++..- .-|| .+-|+.||.|+.||+|+ ..+.+..+..+ +.|+++.-... ..|+.+-..|+|.
T Consensus 2 V~al~~~d~--d~dg---~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-------~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDF--DGDG---ENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-------GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEec--CCCC---cceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-------CEEEEEecCCEEE
Confidence 667776531 1234 46899999999999997 44677777654 56777776654 6799999999999
Q ss_pred EEECCCceeEEEecCCCCCcEEEEEcCCC----CEEEEEecC
Q 000781 653 LASLETLRVERMFPGHPNYPAKVVWDCPR----GYIACLCRD 690 (1288)
Q Consensus 653 lWdl~t~~~l~~l~gH~~~V~~V~~sp~~----~~L~tg~~D 690 (1288)
+|+-.. +. -.... ...++++.+..-. .-|++|..+
T Consensus 67 vY~~~~-Rl-WRiKS-K~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 67 VYDRSQ-RL-WRIKS-KNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred EEeCcc-ee-eeecc-CCCeEEEEEEcCCCCCceEEEEEecC
Confidence 997532 22 22222 2346666654322 257776544
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.13 E-value=3.8 Score=45.17 Aligned_cols=144 Identities=15% Similarity=0.073 Sum_probs=88.7
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEE-ecCCc---CEEEEEEeecccCCCCCccCcEEEEEECCCcE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTG---AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSI 603 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l-~gH~~---~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI 603 (1288)
+++++.++.++. +| .++|+.+... ..... ....... ..++ ..++.+..++.|
T Consensus 79 v~v~~~~~~l~~--~d-------------~~tG~~~W~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~g~l 134 (238)
T PF13360_consen 79 VYVGTSDGSLYA--LD-------------AKTGKVLWSIYLTSSPPAGVRSSSSP-----AVDG----DRLYVGTSSGKL 134 (238)
T ss_dssp EEEEETTSEEEE--EE-------------TTTSCEEEEEEE-SSCTCSTB--SEE-----EEET----TEEEEEETCSEE
T ss_pred cccccceeeeEe--cc-------------cCCcceeeeeccccccccccccccCc-----eEec----CEEEEEeccCcE
Confidence 677777886666 33 5567676663 33211 1111111 1123 788888889999
Q ss_pred EEEeCCCCceEEEEeccCcC----------EEEEEECCCCCCCCCCCEEEEEECCCc-EEEEECCCceeEEEecCCCCCc
Q 000781 604 RIWDLGSGNLITVMHHHVAP----------VRQIILSPPQTEHPWSDCFLSVGEDFS-VALASLETLRVERMFPGHPNYP 672 (1288)
Q Consensus 604 ~vWDl~tg~~l~~~~~H~~~----------V~~l~~sp~~~~~~~g~~l~Sgs~Dgs-V~lWdl~t~~~l~~l~gH~~~V 672 (1288)
..+|+.+|+.+-.+..+... +..-....+ + .+..++.++. +.+ |+++++.+.... ...+
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~ 204 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD------G-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGI 204 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT------T-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-E
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC------C-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCc
Confidence 99999999998887665422 122222223 4 6666776775 666 999999664333 2222
Q ss_pred EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 673 ~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
... ....+..|++++. |+.|+.||++||+....
T Consensus 205 ~~~-~~~~~~~l~~~~~--------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 205 YSL-PSVDGGTLYVTSS--------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CEC-EECCCTEEEEEET--------TTEEEEEETTTTEEEEE
T ss_pred cCC-ceeeCCEEEEEeC--------CCEEEEEECCCCCEEeE
Confidence 221 3467788886542 48999999999997643
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.96 E-value=3.1 Score=50.89 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=80.4
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECC--CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D--~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~ 634 (1288)
+.+++... +....+.+....| +||| +.++++.+.+ ..|.++|+.+++. ..+..+.+....-.|+|+
T Consensus 220 l~tg~~~~-lt~~~g~~~~~~~-----SPDG---~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD-- 287 (419)
T PRK04043 220 LYTGKKEK-IASSQGMLVVSDV-----SKDG---SKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED-- 287 (419)
T ss_pred CCCCcEEE-EecCCCcEEeeEE-----CCCC---CEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC--
Confidence 44454433 3334566667778 5788 3455555544 4577778877764 445444443445679999
Q ss_pred CCCCCCEEEEEEC-CC--cEEEEECCCceeEEEec-CCCCCcEEEEEcCCCCEEEEEecCCCcccC---CCCeEEEEECC
Q 000781 635 EHPWSDCFLSVGE-DF--SVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSD---AVDVLFIWDVK 707 (1288)
Q Consensus 635 ~~~~g~~l~Sgs~-Dg--sV~lWdl~t~~~l~~l~-gH~~~V~~V~~sp~~~~L~tg~~D~sgssD---~DgtV~VWDl~ 707 (1288)
|+.|+-.+. .+ .|.+.|+.+++..+... +. . ...|+|+|++|+..+.. ...+ ....|++.|++
T Consensus 288 ----G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~--~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 288 ----DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRE--TNNEFGKNTFNLYLISTN 357 (419)
T ss_pred ----CCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEcC--CCcccCCCCcEEEEEECC
Confidence 776655553 33 67778888877744332 22 1 24899999999865543 1110 01478888998
Q ss_pred CCcE
Q 000781 708 TGAR 711 (1288)
Q Consensus 708 tg~l 711 (1288)
+|+.
T Consensus 358 ~g~~ 361 (419)
T PRK04043 358 SDYI 361 (419)
T ss_pred CCCe
Confidence 8864
No 312
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.79 E-value=0.016 Score=70.32 Aligned_cols=165 Identities=17% Similarity=0.217 Sum_probs=106.2
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEE----CCCcE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCSI 603 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs----~D~tI 603 (1288)
+..|..+|.|.+..+-... . + ...+..+|....++++|++ -|. ++||.|- .|..+
T Consensus 73 lavG~atG~I~l~s~r~~h-----d------S--s~E~tp~~ar~Ct~lAwne----LDt----n~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPH-----D------S--SAEVTPGYARPCTSLAWNE----LDT----NHLAAGLDKHRNDSSL 131 (783)
T ss_pred hhhccccCceEEeecCCcc-----c------c--cceeccccccccccccccc----ccH----HHHHhhhhhhcccCCc
Confidence 7888999999986542111 0 1 2345568889999999975 233 6777773 46789
Q ss_pred EEEeCCCC--ceE--EEEec-cCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-eeEEEecCCCCCcEEEEE
Q 000781 604 RIWDLGSG--NLI--TVMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVW 677 (1288)
Q Consensus 604 ~vWDl~tg--~~l--~~~~~-H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-~~l~~l~gH~~~V~~V~~ 677 (1288)
.|||+.++ .+. -.|.+ ......+++|..+ .+++.+|...+.++++|+|.. .....+ .+..+..+..
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tV 203 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITV 203 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhhhhhhhh--hhhhccccee
Confidence 99999877 222 12333 4456678888766 678999999999999999832 112222 2235566778
Q ss_pred cC-CCCEEEEEecCCCcccCCCCeEEEEE-CCC-CcEEEEEeCCCC----ceEEeeeecC
Q 000781 678 DC-PRGYIACLCRDHSRTSDAVDVLFIWD-VKT-GARERVLRGTAS----HSMFDHFCKG 730 (1288)
Q Consensus 678 sp-~~~~L~tg~~D~sgssD~DgtV~VWD-l~t-g~l~~~l~GH~~----~vi~~~~~~~ 730 (1288)
+| ..+|++. .. ||.|.+|| .+. ..+++.+..... .+..+.||+.
T Consensus 204 dp~~~nY~cs-------~~--dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 204 DPFSPNYFCS-------NS--DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred cCCCCCceec-------cc--cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 88 6788772 33 58999999 332 223333332222 3667778863
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.08 Score=61.51 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=72.9
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCE
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
....+.+|...|..++|+| .. ..++..++.+.+|+|.|+++......+..| ..+++++|.-++ .+.
T Consensus 185 ssq~lp~~g~~IrdlafSp-----~~---~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-----~h~ 250 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSP-----FN---EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-----RHV 250 (463)
T ss_pred hhhcccccchhhhhhccCc-----cc---cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-----cce
Confidence 4557789999999999965 22 138999999999999999999999999888 889999999874 578
Q ss_pred EEEEECCCcEEEEECCCce
Q 000781 642 FLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~~ 660 (1288)
|..|-..|.|.+||++..+
T Consensus 251 IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eEEeccCceEEEEEccCCC
Confidence 9999999999999998653
No 314
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.08 E-value=15 Score=42.90 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=113.2
Q ss_pred EEEEEeCCCCeEEEEeC-CCCEEEEEccCCCCCcceeeEEeeccccc----------eEEeEeccccccccCcccccccc
Q 000781 20 TATSALTQPPTLYTGGS-DGSILWWSFSDSSYSEIKPVAMLCGHSAP----------IADLSICYPAMVSRDGKAEHWKA 88 (1288)
Q Consensus 20 Tala~spdg~~LaTGs~-DG~I~lWdl~~~~~~~~~p~~~l~GH~~~----------Vt~L~~~s~~~~~~~~~~~~~~~ 88 (1288)
+-++++++|++|+++.. .|.|.+..+.. .....+.--+.-|.++ +.+. ..
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~--dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a---~~-------------- 152 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQA--DGSLQPVVQVVKHTGSGPHERQESPHVHSA---NF-------------- 152 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEccc--CCccccceeeeecCCCCCCccccCCcccee---ee--------------
Confidence 88999999999999855 68899999974 2222222223334444 2222 22
Q ss_pred cccCcccccccCCCCEEEEEeCC-CeEEEEECCCCeeEEEeeCCCCc-CCCceeeeeCCCCCceEEEEeeccCCcccccc
Q 000781 89 ENSSNVMGKSSLDNGALISACTD-GVLCVWSRSSGHCRRRRKLPPWV-GSPSVICTLPSNPRYVCIGCCFIDTNQLSDHH 166 (1288)
Q Consensus 89 ~~~~~~~~~~s~d~~~LvS~s~D-G~l~vWdl~~G~c~~~~~l~~~~-~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~~~ 166 (1288)
+|++++|++.... ..|.++++.+|++.......--. ..|+.|.+.| +.+..-+.|-.
T Consensus 153 ----------tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL---------- 211 (346)
T COG2706 153 ----------TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNEL---------- 211 (346)
T ss_pred ----------CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEecc----------
Confidence 8999999888753 57889999999876443221011 3556666554 34333333332
Q ss_pred cccccccccccccccCCCCCCCCceEEEEecCC--c--eEEEEEec--cccccCC--ceEEEEEeccCCCCcceEEEEec
Q 000781 167 SFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYG--L--TIVQTVFH--GNLSIGP--WKFMDVVSLGEDMGKHYGLMVDS 238 (1288)
Q Consensus 167 ~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~t--l--~vl~~~~~--~~~~~~~--is~l~v~~~~~~~~~~~~lls~s 238 (1288)
.++|.+|.-.. + +.++++.. .+ ..+. ..++.++. |++ -+.++.-
T Consensus 212 ----------------------~stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~---dGr--FLYasNR 263 (346)
T COG2706 212 ----------------------NSTVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISP---DGR--FLYASNR 263 (346)
T ss_pred ----------------------CCEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECC---CCC--EEEEecC
Confidence 23454443322 2 23333321 00 1112 45555553 333 1333333
Q ss_pred CCcEEEEeeccCCccccccCCcccccCcccceeEeecCcccCceEEEEecCCCEEEEEecCce---EEee
Q 000781 239 VGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC---IFRL 305 (1288)
Q Consensus 239 ~d~~ikvW~l~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~---i~~~ 305 (1288)
....|-++.+... .+ ....+.....+....+...+++.|+.++.+..++. +|..
T Consensus 264 g~dsI~~f~V~~~--~g-----------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 264 GHDSIAVFSVDPD--GG-----------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCeEEEEEEcCC--CC-----------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 4445655555542 01 12233334444455789999999999888877765 7776
No 315
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=0.39 Score=57.92 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=83.7
Q ss_pred EEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC------
Q 000781 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------ 647 (1288)
Q Consensus 574 ~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~------ 647 (1288)
+-+.| ||.| .+|+|=-.-| |.+|-=..-..+++| .|. .|.-+.|+|. ..+|+|=|.
T Consensus 214 tyv~w-----SP~G----TYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~------EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRW-----SPKG----TYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPN------EKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEe-----cCCc----eEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCc------cceEEEecCCccccC
Confidence 45778 5688 8999876654 679976666677777 464 5889999998 788988653
Q ss_pred -----CCcEEEEECCCceeEEEecCC--CCCcE-EEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 648 -----DFSVALASLETLRVERMFPGH--PNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 648 -----DgsV~lWdl~t~~~l~~l~gH--~~~V~-~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
-..++|||+++|...+.|..- ...++ -..|+.|++|++.-.. ++|.|++..+-.++
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---------~sisIyEtpsf~ll 339 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---------NSISIYETPSFMLL 339 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc---------ceEEEEecCceeee
Confidence 268999999999988888652 22333 6799999999996443 48999998775443
No 316
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.26 Score=60.44 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=66.0
Q ss_pred cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcE-EEEEcCCCCEEEEEecCCCcccCCCCe
Q 000781 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1288)
Q Consensus 622 ~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~-~V~~sp~~~~L~tg~~D~sgssD~Dgt 700 (1288)
..|.-+.|+|. -..+|.+-.+|.|.+.-+. .+.+.+++-|.-.++ +++|+|||+.|++|-.| |+
T Consensus 21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--------G~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--------GT 85 (665)
T ss_pred cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC--------Ce
Confidence 35778899998 7899999999999999888 666677776655666 99999999999997765 99
Q ss_pred EEEEECCCCcEEEE
Q 000781 701 LFIWDVKTGARERV 714 (1288)
Q Consensus 701 V~VWDl~tg~l~~~ 714 (1288)
|++-|.++|..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999999987765
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.21 E-value=19 Score=41.10 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=83.8
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEec-------cCcCEEEEEECCCCCCCCCCCEEEEE
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------HVAPVRQIILSPPQTEHPWSDCFLSV 645 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~-------H~~~V~~l~~sp~~~~~~~g~~l~Sg 645 (1288)
=.-++| |||+ .+||.+...|+|+++|+....+ ..+.. -...|..+.|.+......|...++..
T Consensus 46 WRkl~W-----SpD~----tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 46 WRKLAW-----SPDC----TLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred heEEEE-----CCCC----cEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence 456889 5788 9999999999999999975433 22221 13567788787654445556678888
Q ss_pred ECCCcEEEEECC-----CceeEEEe--cC-CCCCcEEEEEcCCCCEEEEEecCCCcccC-----CCCeEEEEECCCCcE
Q 000781 646 GEDFSVALASLE-----TLRVERMF--PG-HPNYPAKVVWDCPRGYIACLCRDHSRTSD-----AVDVLFIWDVKTGAR 711 (1288)
Q Consensus 646 s~DgsV~lWdl~-----t~~~l~~l--~g-H~~~V~~V~~sp~~~~L~tg~~D~sgssD-----~DgtV~VWDl~tg~l 711 (1288)
..+|.++=|-+. ..+..+.| .. +...|.++.|+|..+.|++|+... ..+ .+.-+..|.+-.+.+
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~--~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ--NQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC--CCCccccccccCceEEEEcCCCC
Confidence 888888766542 22333333 33 367899999999999888776431 111 012467787765544
No 318
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=92.96 E-value=46 Score=44.96 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=65.1
Q ss_pred eEEEeCCC---CCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcc
Q 000781 6 VACIWSGT---PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1288)
Q Consensus 6 ~~~lw~~~---~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~ 82 (1288)
+.+=|... .+..+|.++.+.+|...|+.+.++|.|.+...+. +......-...-=...|.|. .+
T Consensus 62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~--~~~~~~~E~VG~vd~GI~a~---~W-------- 128 (928)
T PF04762_consen 62 VLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDP--DPDEDEIEIVGSVDSGILAA---SW-------- 128 (928)
T ss_pred EEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccC--CCCCceeEEEEEEcCcEEEE---EE--------
Confidence 44456544 4667899999999999999999999999994332 11112222222235668888 45
Q ss_pred cccccccccCcccccccCCCCEEEEEeCCCeEEEEECCCCeeEEEeeC
Q 000781 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1288)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l 130 (1288)
|||+..|+-+..+|+|.+-+. +..-+....+
T Consensus 129 ----------------SPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l 159 (928)
T PF04762_consen 129 ----------------SPDEELLALVTGEGNLLLMTR-DFDPISEVPL 159 (928)
T ss_pred ----------------CCCcCEEEEEeCCCEEEEEec-cceEEEEeec
Confidence 899999999999999988765 3444444333
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.61 E-value=11 Score=43.74 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=80.4
Q ss_pred EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC-----CCcEEEEeCC-CCceEEEEeccCcCEEEEEECCCCCCCC
Q 000781 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-----DCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1288)
Q Consensus 564 ~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~-----D~tI~vWDl~-tg~~l~~~~~H~~~V~~l~~sp~~~~~~ 637 (1288)
+.|.||. .| |+|| ++|++.-. .|.|-|||.. +-+.+..|..|.=.-..+.+.|+
T Consensus 50 RHFyGHg------~f-----s~dG----~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD----- 109 (305)
T PF07433_consen 50 RHFYGHG------VF-----SPDG----RLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD----- 109 (305)
T ss_pred CEEecCE------EE-----cCCC----CEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC-----
Confidence 4566772 46 6899 88877644 4689999998 55677788877766677777887
Q ss_pred CCCEEEEE------------------ECCCcEEEEECCCceeEEE--e--------------------------------
Q 000781 638 WSDCFLSV------------------GEDFSVALASLETLRVERM--F-------------------------------- 665 (1288)
Q Consensus 638 ~g~~l~Sg------------------s~DgsV~lWdl~t~~~l~~--l-------------------------------- 665 (1288)
++.|+.+ ..+-++.+.|.++|+.+.. +
T Consensus 110 -G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 110 -GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred -CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 4333322 1223444444444433221 1
Q ss_pred -----------------c-------CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 666 -----------------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 666 -----------------~-------gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
. .-.+++-+|++++++.++++.|- +-+.+.+||..+|+++....
T Consensus 189 ~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP-------rGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 189 APPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP-------RGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred cCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-------CCCEEEEEECCCCCEeeccc
Confidence 0 11235778888888888876443 34799999999999877654
No 320
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.40 E-value=0.33 Score=40.32 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred EeCCCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEcc
Q 000781 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFS 46 (1288)
Q Consensus 9 lw~~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~ 46 (1288)
++++.....+|++++++|..++||.|..||.|.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45677778889999999999999999999999999996
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.40 E-value=6.8 Score=51.95 Aligned_cols=156 Identities=10% Similarity=0.035 Sum_probs=95.8
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
+.|.++.|..+..- ++.+..+|+|.+.+-. +.. .....--.+.|.+.+| |||+
T Consensus 69 ~~i~s~~fl~d~~~----i~v~~~~G~iilvd~e---------------t~~-~eivg~vd~GI~aasw-----S~De-- 121 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS----ICVITALGDIILVDPE---------------TLE-LEIVGNVDNGISAASW-----SPDE-- 121 (1265)
T ss_pred cceEEEEEecccce----EEEEecCCcEEEEccc---------------ccc-eeeeeeccCceEEEee-----cCCC--
Confidence 57888888877766 8999999999995321 111 1111122578999999 5787
Q ss_pred cCcEEEEEECCCcEEEEeC----CC-------------------CceEEEEeccCc---------------------CEE
Q 000781 590 FNEVLVSGSMDCSIRIWDL----GS-------------------GNLITVMHHHVA---------------------PVR 625 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl----~t-------------------g~~l~~~~~H~~---------------------~V~ 625 (1288)
++++-...+.++.+-+- -. |+--..|+|..+ .=+
T Consensus 122 --e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 122 --ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred --cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc
Confidence 88887777777765432 11 111123332211 113
Q ss_pred EEEECCCCCCCCCCCEEEEE----ECC-CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCe
Q 000781 626 QIILSPPQTEHPWSDCFLSV----GED-FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1288)
Q Consensus 626 ~l~~sp~~~~~~~g~~l~Sg----s~D-gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~Dgt 700 (1288)
+|.|.-+ |++|+.. -.| +.|++||-+ |..-.+-....+-=.+++|.|.|..+++-..+ ++ |+.
T Consensus 200 ~IsWRgD------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~---~s--d~~ 267 (1265)
T KOG1920|consen 200 SISWRGD------GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK---TS--DSD 267 (1265)
T ss_pred eEEEccC------CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeec---CC--CCc
Confidence 4777766 7888772 234 899999977 43322222122223489999999999876554 33 468
Q ss_pred EEEEEC
Q 000781 701 LFIWDV 706 (1288)
Q Consensus 701 V~VWDl 706 (1288)
|.++.-
T Consensus 268 IvffEr 273 (1265)
T KOG1920|consen 268 IVFFER 273 (1265)
T ss_pred EEEEec
Confidence 988874
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.32 E-value=0.53 Score=58.53 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=78.5
Q ss_pred cEEEEEECCCcEEEEeCCCCceE-EEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCcee---EEE--e
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERM--F 665 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l-~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~---l~~--l 665 (1288)
++++-|+.-|.+.+++-..++.. .+..+-.+.+..+.++++ ..++|.|+..|.|.++-++.+.+ +.. +
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV------EYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch------hHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 89999999999999998877743 344455566677777887 67888899999999998876422 111 1
Q ss_pred -cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 666 -PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 666 -~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
..|...|++++|++++..+++ +|.-|+|..-.+.+
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ys--------GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYS--------GDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEee--------cCCCceEEEEEech
Confidence 236788999999999999995 44458888887766
No 323
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=0.28 Score=63.29 Aligned_cols=74 Identities=22% Similarity=0.374 Sum_probs=61.1
Q ss_pred CceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCcccccccccccCccc
Q 000781 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1288)
Q Consensus 16 ~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~~~~~~~~~ 95 (1288)
..+|++++|+.||.++..|-.+|.|.+||... .++.+++..|.+|++++-+...
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-----~k~l~~i~e~~ap~t~vi~v~~--------------------- 183 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-----AKILKVITEHGAPVTGVIFVGR--------------------- 183 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccC-----CcceeeeeecCCccceEEEEEE---------------------
Confidence 46799999999999999999999999999996 5788899999999999866444
Q ss_pred ccccCCCCEEEEEeCCCeEEEEECC
Q 000781 96 GKSSLDNGALISACTDGVLCVWSRS 120 (1288)
Q Consensus 96 ~~~s~d~~~LvS~s~DG~l~vWdl~ 120 (1288)
..++..++++..-|. +|.+.
T Consensus 184 ---t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 184 ---TSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ---eCCCcEEEEccCCCc--eEEEE
Confidence 445557788877776 67653
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.94 E-value=2.3 Score=55.28 Aligned_cols=131 Identities=14% Similarity=0.077 Sum_probs=90.9
Q ss_pred ccCCceeEEEEecCCcC-EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc--eEEE-Ee--ccCcCEEEEEE
Q 000781 556 KVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--LITV-MH--HHVAPVRQIIL 629 (1288)
Q Consensus 556 d~~t~~~~~~l~gH~~~-V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~--~l~~-~~--~H~~~V~~l~~ 629 (1288)
|++.|+.+....-|... |..++-.. ..+.-.....+.|=.+..+..||.+-.. ++.. .+ .......|++-
T Consensus 510 DLe~GKVV~eW~~~~~~~v~~~~p~~----K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aT 585 (794)
T PF08553_consen 510 DLERGKVVEEWKVHDDIPVVDIAPDS----KFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFAT 585 (794)
T ss_pred ecCCCcEEEEeecCCCcceeEecccc----cccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEe
Confidence 68899999999888754 66654210 0000112467788889999999998532 3211 11 12345667776
Q ss_pred CCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 630 sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
..+ .+||.|+.+|.||+||--..+....|++-..+|..|..+.||++++..|. ..+-+.+.
T Consensus 586 t~~-------G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~---------tyLlLi~t 646 (794)
T PF08553_consen 586 TED-------GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK---------TYLLLIDT 646 (794)
T ss_pred cCC-------ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec---------ceEEEEEE
Confidence 654 57999999999999995444555667777789999999999999996653 46777765
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.87 E-value=5.1 Score=39.50 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=66.8
Q ss_pred EEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccC
Q 000781 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591 (1288)
Q Consensus 512 Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~ 591 (1288)
|+++++..-..--.+.|+.|+.|..|++++ ..+.+..+.. ++.|++|.... +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~-----------------~~e~~~Ei~e-~~~v~~L~~~~------~---- 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK-----------------GDEIVAEITE-TDKVTSLCSLG------G---- 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe-----------------CCcEEEEEec-ccceEEEEEcC------C----
Confidence 555555443333334599999999999943 2335555553 57788887631 2
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECC-CCCCCCCCCEEEEEECCCcEE
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP-PQTEHPWSDCFLSVGEDFSVA 652 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp-~~~~~~~g~~l~Sgs~DgsV~ 652 (1288)
..++-|-.+|||-+|+- ...+-+.+.... ++++.+.. ++. --..|++|-.+|.|-
T Consensus 54 ~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~D~~gd---G~~eLI~GwsnGkve 109 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFYDINGD---GVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEEcCCCC---CceEEEEEecCCeEE
Confidence 57999999999999975 333444444333 55555433 211 013688888888764
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.79 E-value=9.9 Score=46.14 Aligned_cols=194 Identities=10% Similarity=-0.036 Sum_probs=88.9
Q ss_pred CceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeec------cccceEEeEeccccccccCccccccccc
Q 000781 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG------HSAPIADLSICYPAMVSRDGKAEHWKAE 89 (1288)
Q Consensus 16 ~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~G------H~~~Vt~L~~~s~~~~~~~~~~~~~~~~ 89 (1288)
.++|||++.| |=-.+|.|++||.+.|-|++ ++..-...-+.. ....|+++.|.--
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~R---GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm--------------- 146 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLR---GPAVIYNENIRESFLSKSSSSYVTSIEFSVM--------------- 146 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETT---TTEEEEEEEGGG--T-SS----EEEEEEEEE---------------
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECC---CCeEEeeccccccccccccccCeeEEEEEEE---------------
Confidence 5789999998 44599999999999999998 333222212222 2456888877421
Q ss_pred ccCcccccc--cCCCCEEEEEeCCCeEEEEECC-C--CeeEEEeeCC--CCcCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000781 90 NSSNVMGKS--SLDNGALISACTDGVLCVWSRS-S--GHCRRRRKLP--PWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1288)
Q Consensus 90 ~~~~~~~~~--s~d~~~LvS~s~DG~l~vWdl~-~--G~c~~~~~l~--~~~~~~s~I~~l~~~~~~~~l~c~g~~~~~~ 162 (1288)
.+. ....-+|+.|...|.+.++.+. . |+-....... ...+....|..+ ..+++..
T Consensus 147 ------~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i------------~~~~G~~ 208 (395)
T PF08596_consen 147 ------TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPI------------NADTGES 208 (395)
T ss_dssp ------E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEE------------ETTT--B
T ss_pred ------ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEE------------ECCCCCc
Confidence 111 1223577888888999999775 1 2111110000 000112222222 1111110
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcE
Q 000781 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRL 242 (1288)
Q Consensus 163 ~~~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ 242 (1288)
. ......+++..-.........-.....|+++.+.+.+..+..+. .......++|+... .......|++...+|.
T Consensus 209 a-~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~-~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 209 A-LATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTI-SRNGGYCLVCLFNNGS 283 (395)
T ss_dssp --B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE--EEEEEEEEEEETTSE
T ss_pred c-cCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec---cccccceEEEEeec-ccCCceEEEEEECCCc
Confidence 0 00000000000000000011112345677888777776666554 21224445555220 1123678999999999
Q ss_pred EEEeeccCC
Q 000781 243 QLVPISKES 251 (1288)
Q Consensus 243 ikvW~l~~~ 251 (1288)
+++..+...
T Consensus 284 i~i~SLP~L 292 (395)
T PF08596_consen 284 IRIYSLPSL 292 (395)
T ss_dssp EEEEETTT-
T ss_pred EEEEECCCc
Confidence 999999875
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.66 E-value=33 Score=41.68 Aligned_cols=223 Identities=15% Similarity=0.143 Sum_probs=114.2
Q ss_pred cEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCC---CC----------------CCcccc--------CCc-ee
Q 000781 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHN---SP----------------GASLKV--------NSH-VS 562 (1288)
Q Consensus 511 ~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~---~~----------------~~~~d~--------~t~-~~ 562 (1288)
.|+.+-+..+..- +++|...|++.+++|....... .. ...-|+ +.+ .+
T Consensus 3 ~v~~vs~a~~t~E----lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P 78 (395)
T PF08596_consen 3 SVTHVSFAPETLE----LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP 78 (395)
T ss_dssp -EEEEEEETTTTE----EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE
T ss_pred eEEEEEecCCCce----EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc
Confidence 4566555666555 9999999999999995543221 00 000011 112 35
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEE--ec------cCcCEEEEEECCCCC
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM--HH------HVAPVRQIILSPPQT 634 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~--~~------H~~~V~~l~~sp~~~ 634 (1288)
...+....++|++++.+ |= -+++.|.+||++.|-|++....+..- .. ....|+++.|..-.
T Consensus 79 ~~l~~~~~g~vtal~~S------~i----GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~- 147 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNS------DI----GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT- 147 (395)
T ss_dssp EEEE---S-SEEEEEE-------BT----SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred hhheeccCCcEeEEecC------CC----cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe-
Confidence 55566678999999973 22 59999999999999999877766552 22 23468888876321
Q ss_pred CCCCC---CEEEEEECCCcEEEEECCC---cee----EEEecCCCCCcEEEE-EcCC---------------------CC
Q 000781 635 EHPWS---DCFLSVGEDFSVALASLET---LRV----ERMFPGHPNYPAKVV-WDCP---------------------RG 682 (1288)
Q Consensus 635 ~~~~g---~~l~Sgs~DgsV~lWdl~t---~~~----l~~l~gH~~~V~~V~-~sp~---------------------~~ 682 (1288)
..-++ -++..|...|.+.+|.+.- ++. ......|.+.|..|. ++.+ ..
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 01112 3788889999999998752 221 222224556666554 3221 12
Q ss_pred EEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeeecCccceeeecceeeCcccccCCceeeccCCcEEE
Q 000781 683 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1288)
Q Consensus 683 ~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~~~~~~~~~sgsi~~w~~~~s~~l~~~~~D~tvr~ 762 (1288)
++++. + +..+||+...+.+..+... .....+...+- . .... ......++-++.|+.+|.
T Consensus 228 ~vVvv-------S--e~~irv~~~~~~k~~~K~~--~~~~~~~~~~v-v--~~~~-------~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 228 YVVVV-------S--ESDIRVFKPPKSKGAHKSF--DDPFLCSSASV-V--PTIS-------RNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp EEEEE----------SSEEEEE-TT---EEEEE---SS-EEEEEEEE-E--EEE--------EEEEEEEEEEETTSEEEE
T ss_pred EEEEE-------c--ccceEEEeCCCCcccceee--ccccccceEEE-E--eecc-------cCCceEEEEEECCCcEEE
Confidence 44432 2 2689999998877655443 22232221110 0 0000 112335677888999999
Q ss_pred EeCCccc
Q 000781 763 SQIQNDE 769 (1288)
Q Consensus 763 w~~~~~~ 769 (1288)
..+..++
T Consensus 287 ~SLP~Lk 293 (395)
T PF08596_consen 287 YSLPSLK 293 (395)
T ss_dssp EETTT--
T ss_pred EECCCch
Confidence 9876543
No 328
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.64 E-value=0.75 Score=51.96 Aligned_cols=117 Identities=13% Similarity=0.247 Sum_probs=82.4
Q ss_pred CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-----eEEEEeccC------------cCEEEEEECCC
Q 000781 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-----LITVMHHHV------------APVRQIILSPP 632 (1288)
Q Consensus 570 ~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-----~l~~~~~H~------------~~V~~l~~sp~ 632 (1288)
...|+++.|. ..| .++++|...|.|-++.-.... ....|++|. ..|+.+.|..+
T Consensus 26 ad~ItaVefd-----~tg----~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 26 ADKITAVEFD-----ETG----LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred cceeeEEEec-----ccc----ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence 4568899983 456 899999988999999765332 334466664 35788888766
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECCCc------------------------------------------eeEEEe-cCCC
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLETL------------------------------------------RVERMF-PGHP 669 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~t~------------------------------------------~~l~~l-~gH~ 669 (1288)
+. ...|+-...|++|++|-+... ++.+.. ..|.
T Consensus 97 t~----r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 97 TG----RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred CC----cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 32 346777789999999987543 001111 3566
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 670 ~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
.-+.++.|+.|...++ ++| |=.|.+|+++-
T Consensus 173 yhiNSiS~NsD~et~l--------SaD-dLrINLWnl~i 202 (460)
T COG5170 173 YHINSISFNSDKETLL--------SAD-DLRINLWNLEI 202 (460)
T ss_pred eEeeeeeecCchheee--------ecc-ceeeeeccccc
Confidence 6688999999999888 344 67899998763
No 329
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.79 Score=56.46 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=74.2
Q ss_pred cCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEE-EEEECCCCCCCCCCCEEEEEECCC
Q 000781 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDF 649 (1288)
Q Consensus 571 ~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~-~l~~sp~~~~~~~g~~l~Sgs~Dg 649 (1288)
-.+.-+.|+| .- .++|.+..+|.|.+.-+. .+.+-++.-|...|+ +++|.|+ |+.++.|-.||
T Consensus 21 ~~i~~~ewnP-----~~----dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNP-----KM----DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcC-----cc----chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC------CCEEEEEecCC
Confidence 3466778865 32 789999999999998887 677788887887887 9999999 89999999999
Q ss_pred cEEEEECCCceeEEEec-CCCCCcEEEEEcC
Q 000781 650 SVALASLETLRVERMFP-GHPNYPAKVVWDC 679 (1288)
Q Consensus 650 sV~lWdl~t~~~l~~l~-gH~~~V~~V~~sp 679 (1288)
+|++-|.+++..+..+. .-...|.++.|.+
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999988776632 1234677777763
No 330
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.99 E-value=0.49 Score=51.84 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=62.3
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
+++|..+|.|+++.|...+.. .+. +..-...|-|.. |.+ .+..+..+++.|+.||.|+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~------~d~--------~~s~~e~i~~~I-------p~~-~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAH------SDR--------VCSGEESIDLGI-------PNG-RDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred EEeecccceEEEecCCccchH------HHh--------hhcccccceecc-------ccc-cccceeEEeccCCceeeec
Confidence 899999999999887633221 000 111123333332 222 1225899999999999999
Q ss_pred CCCCceEEEEeccC-cCEEEEEECCCCCCCCCCCEEEEE--ECCCcEEEEECC
Q 000781 608 LGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLE 657 (1288)
Q Consensus 608 l~tg~~l~~~~~H~-~~V~~l~~sp~~~~~~~g~~l~Sg--s~DgsV~lWdl~ 657 (1288)
+...+.+...-.|+ .++......-. +..++.. |.|..++.|++.
T Consensus 131 ~~p~k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 131 IKPNKVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccCceeeeeccccCCCcceeEEecC------CceEEeeccccchhhhhcchh
Confidence 99888877777776 44444443333 3445555 556666666654
No 331
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.30 E-value=4.6 Score=49.26 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=84.8
Q ss_pred cCEEEEEEeecccCCCCCccCcEEEEEEC-----------CCcEEEEeCCCCceEEEEeccCc--CE-EEEEECCCCCCC
Q 000781 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSM-----------DCSIRIWDLGSGNLITVMHHHVA--PV-RQIILSPPQTEH 636 (1288)
Q Consensus 571 ~~V~~L~~~p~~~SpdG~~~~~~L~SGs~-----------D~tI~vWDl~tg~~l~~~~~H~~--~V-~~l~~sp~~~~~ 636 (1288)
-.|.-+.|+ |+. ++|+|=|. -..++|||+.+|...+.|..-.+ .+ .-+.|+.+
T Consensus 250 p~Vq~idfS-----P~E----kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D---- 316 (698)
T KOG2314|consen 250 PGVQFIDFS-----PNE----KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD---- 316 (698)
T ss_pred CCceeeecC-----Ccc----ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC----
Confidence 347778884 555 88888653 14789999999999888876322 22 23568888
Q ss_pred CCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 637 ~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
++++|.-.. .+|.||+.....++-.-.-.-..|....|+|.++.|+-=..- ..+.-..+.+-.+.+++.+|+-+
T Consensus 317 --dKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe---~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 317 --DKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE---TNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred --CceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc---ccCCcceEEEEecCccceeeecc
Confidence 788887766 578999877644332111123467788999998888732111 01111467778888888877765
Q ss_pred CCC
Q 000781 717 GTA 719 (1288)
Q Consensus 717 GH~ 719 (1288)
-|.
T Consensus 391 lfn 393 (698)
T KOG2314|consen 391 LFN 393 (698)
T ss_pred cee
Confidence 443
No 332
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.06 E-value=4.6 Score=48.85 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=86.2
Q ss_pred EecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEE
Q 000781 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1288)
Q Consensus 566 l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sg 645 (1288)
+..-.-++..+.| ||.| .+|++...- -|.+|+-..+..+.+|. | ..|..+.|+|. +.+|.+=
T Consensus 28 ~~~~~~p~~~~~~-----SP~G----~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~------~kYL~tw 89 (561)
T COG5354 28 FESENWPVAYVSE-----SPLG----TYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPN------EKYLVTW 89 (561)
T ss_pred ccccCcchhheee-----cCcc----hheehhhcc-ceEEccccchhheeeee-c-CCceecccCcc------cceeeee
Confidence 3334567888888 5788 777776544 57899887776566663 3 46899999999 7788875
Q ss_pred ECC---------------CcEEEEECCCceeEEEecCCCCC--cE-EEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 646 GED---------------FSVALASLETLRVERMFPGHPNY--PA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 646 s~D---------------gsV~lWdl~t~~~l~~l~gH~~~--V~-~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
+.. ..+.+||..++..+..+.+-..+ .+ -+.|+-++.|++=. .+ ..++|+++
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv------v~---~sl~i~e~- 159 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV------VG---SSLYIHEI- 159 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh------cc---CeEEEEec-
Confidence 543 35999999999999999877655 45 78999999887731 22 48999998
Q ss_pred CCc
Q 000781 708 TGA 710 (1288)
Q Consensus 708 tg~ 710 (1288)
|+.
T Consensus 160 t~n 162 (561)
T COG5354 160 TDN 162 (561)
T ss_pred CCc
Confidence 544
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.42 E-value=0.6 Score=58.65 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=73.2
Q ss_pred cEEEEEE----CCCcEEEEeCCCCceEEE--EeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEe
Q 000781 592 EVLVSGS----MDCSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1288)
Q Consensus 592 ~~L~SGs----~D~tI~vWDl~tg~~l~~--~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l 665 (1288)
.+++.++ .-|+|-|+- ++|++.+. ...| +++++|+|. .-.++.|-.-|.+.+|...+.+.-...
T Consensus 28 PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe------~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 28 PLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPE------EFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChH------HHHHhhccccceeEEEecCCceeeeec
Confidence 4555444 346777773 56664332 2223 567999998 567888888899999999888877777
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 666 ~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
..|+.+|.-+.|+|+|..|++ .|.-|.|.+|...
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t--------~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMT--------LDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEE--------cCCCceeEEEEee
Confidence 789999999999999999996 4445899999765
No 334
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.71 E-value=16 Score=40.95 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=72.2
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc--e--EEEE---eccCcCEEEEEECCCCCCCCCCCE
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--L--ITVM---HHHVAPVRQIILSPPQTEHPWSDC 641 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~--~--l~~~---~~H~~~V~~l~~sp~~~~~~~g~~ 641 (1288)
.-...+.++|+ ||| +.++++-+..+.|..+|+.... . .+.+ ..-.+..-.+++..+ |++
T Consensus 132 ~~~~pNGi~~s-----~dg---~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------G~l 197 (246)
T PF08450_consen 132 GLGFPNGIAFS-----PDG---KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------GNL 197 (246)
T ss_dssp EESSEEEEEEE-----TTS---SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT------S-E
T ss_pred CcccccceEEC-----Ccc---hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC------CCE
Confidence 35667899994 677 2355677888899999986322 1 2223 222234778999888 888
Q ss_pred EEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEE-cCCCCEEEE
Q 000781 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-DCPRGYIAC 686 (1288)
Q Consensus 642 l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~-sp~~~~L~t 686 (1288)
.++....+.|.++|.+ |+.+..+.--...+++++| -++.+.|++
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888899999999988 8887776655458999999 466666664
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.11 E-value=12 Score=45.35 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=68.9
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~ 671 (1288)
..++.++.|+.+...|..+|+.+-+... +....+.. . +..+..++.|+.+..+|.++++.+-....-...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--D------GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--E------CCEEEEEcCCCeEEEEECCCCcEEEcccccCCC
Confidence 4677778899999999999987644321 11111222 2 567778889999999999999876543211111
Q ss_pred -cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 672 -PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 672 -V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
..+... .+.+|+++.. ||.+++.|.++|+.+....-
T Consensus 327 ~~~sp~v--~~g~l~v~~~--------~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 327 LLTAPVL--YNGYLVVGDS--------EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred cccCCEE--ECCEEEEEeC--------CCEEEEEECCCCCEEEEEEc
Confidence 111122 2556665432 48999999999998877653
No 336
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=88.03 E-value=1.3 Score=48.73 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=48.8
Q ss_pred cEEEEEECCCcEEEEeCCC-CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~t-g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~ 669 (1288)
.-++.|+.|+.|.+|+..- |.....+..-...|-+.. |.+ +.+.+.++++.|+.|+.|+.+-.+.+.....|.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~~---~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PNG---RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceecc--ccc---cccceeEEeccCCceeeeccccCceeeeecccc
Confidence 5789999999999998762 222222222223333332 221 125699999999999999999888877666665
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.00 E-value=70 Score=38.62 Aligned_cols=97 Identities=7% Similarity=-0.077 Sum_probs=61.3
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCc-CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~-~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~ 670 (1288)
..++.++.|+.+...|..+|+.+-+...-.+ ...+..+. +..++.++.||.+.+.|.++|+.+....-...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--------NGYLVVGDSEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--------CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 5777788999999999999986543321111 11111111 46788899999999999999998876653322
Q ss_pred CcE-EEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 671 YPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 671 ~V~-~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
.+. .-.+ .++.|++++. ||.++.++.
T Consensus 367 ~~~s~P~~--~~~~l~v~t~--------~G~l~~~~~ 393 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQAR--------DGTVYAITR 393 (394)
T ss_pred cceeCCEE--ECCEEEEEeC--------CceEEEEeC
Confidence 232 1122 2445665443 378887764
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.17 E-value=10 Score=50.45 Aligned_cols=115 Identities=12% Similarity=0.198 Sum_probs=72.8
Q ss_pred EEEEEeecccCCCCCccCcEEEE-----EECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE--
Q 000781 574 LCLAAHRMVGTAKGWSFNEVLVS-----GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-- 646 (1288)
Q Consensus 574 ~~L~~~p~~~SpdG~~~~~~L~S-----Gs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs-- 646 (1288)
+.+.| .-|| ++++. ...-++|++||-+ |.+-..-..-.+.=.+++|-|. |..+++..
T Consensus 199 ~~IsW-----RgDg----~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPs------gs~iA~iq~~ 262 (1265)
T KOG1920|consen 199 TSISW-----RGDG----EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPS------GSLIAAIQCK 262 (1265)
T ss_pred ceEEE-----ccCC----cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCC------CCeEeeeeec
Confidence 34777 3466 77777 3333899999977 5543332223344467899997 78888764
Q ss_pred -CCCcEEEEECCC---ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 647 -EDFSVALASLET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 647 -~DgsV~lWdl~t---~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
.|..|.++.-+. +.....++-....|..++|+.++..|++--.+ -....|++|-+...
T Consensus 263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~-----~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN-----LENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecc-----cccceEEEEEecCe
Confidence 466788887442 33333344444458899999999999863211 11135999977553
No 339
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=1.5 Score=57.14 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=66.3
Q ss_pred cEEEEEECCCcEEEEeCCCC-ceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg-~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~ 670 (1288)
.+++-|+..|.|-..|.... .+.+.=..-.++|++++|+.+ |..++.|-.+|.|.+||+..++.++.+.-|..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 56888888888888887543 112222234579999999999 89999999999999999999999888876665
Q ss_pred CcE---EEEEcCCCCEEEE
Q 000781 671 YPA---KVVWDCPRGYIAC 686 (1288)
Q Consensus 671 ~V~---~V~~sp~~~~L~t 686 (1288)
+.+ -+.+..++..+++
T Consensus 174 p~t~vi~v~~t~~nS~llt 192 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLT 192 (1206)
T ss_pred ccceEEEEEEeCCCcEEEE
Confidence 554 4445556666664
No 340
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.18 E-value=87 Score=36.93 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=59.9
Q ss_pred ccCceEEEEecCCCEEEEEecCce---EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeecccccccccccccc
Q 000781 278 VEGGHLVSVATCGNIIALVLKDHC---IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVC 354 (1288)
Q Consensus 278 ~~~v~~Vs~s~dg~~i~~v~~~~~---i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d~~~~~~~~~~~ 354 (1288)
..+.+-|.|.|+++...++..=.. +|.+-.. .+++...+.+.+....-.+..+.+..-+ ..|
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~---~g~~~~lQ~i~tlP~dF~g~~~~aaIhi-s~d----------- 254 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA---VGKFEELQTIDTLPEDFTGTNWAAAIHI-SPD----------- 254 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC---CceEEEeeeeccCccccCCCCceeEEEE-CCC-----------
Confidence 456799999999987766655444 6666332 3555433444443333334444454444 222
Q ss_pred cccceeEEEEeCCC--CEEEEEEcCCCcccccCCccccCcccCCCCCeeeEEEeeccceEEEee
Q 000781 355 TTFYENFAVWDNRG--SAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRME 416 (1288)
Q Consensus 355 ~~~~~~i~vws~dG--~~~ly~l~~~~~~~~~~~l~~i~~~~~~~~~~~~v~f~~~~~~L~~v~ 416 (1288)
++|+..+.+| .+-+|.+......... +...+.....+ ..+.|...+++|+...
T Consensus 255 ----GrFLYasNRg~dsI~~f~V~~~~g~L~~--~~~~~teg~~P---R~F~i~~~g~~Liaa~ 309 (346)
T COG2706 255 ----GRFLYASNRGHDSIAVFSVDPDGGKLEL--VGITPTEGQFP---RDFNINPSGRFLIAAN 309 (346)
T ss_pred ----CCEEEEecCCCCeEEEEEEcCCCCEEEE--EEEeccCCcCC---ccceeCCCCCEEEEEc
Confidence 3677777665 4556666653222222 11111111111 2455666667777664
No 341
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.67 E-value=0.64 Score=58.98 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=90.7
Q ss_pred EecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC--CCceEEEE-----eccCcCEEEEEECCCCCCCCC
Q 000781 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVM-----HHHVAPVRQIILSPPQTEHPW 638 (1288)
Q Consensus 566 l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~--tg~~l~~~-----~~H~~~V~~l~~sp~~~~~~~ 638 (1288)
++|..|.|..+.|.... .|.+ . -.=|...|||+. .|+....+ .-...++.-|.|.|-- +.
T Consensus 128 ~kgf~G~v~dl~fah~~-~pk~----~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~---~~ 194 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTK-CPKG----R-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA---VN 194 (1283)
T ss_pred HhcCCCCcccccccccC-ChHH----H-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccc---cc
Confidence 46778899999983211 1333 2 233578899876 45543333 3334566777787752 22
Q ss_pred CCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEE-----------EcCCCCEEEEEecCCCcccCCCCeEEEEEC-
Q 000781 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-----------WDCPRGYIACLCRDHSRTSDAVDVLFIWDV- 706 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~-----------~sp~~~~L~tg~~D~sgssD~DgtV~VWDl- 706 (1288)
.-+++.+-.|+++++.+..+... ..|++|...++.++ .+|||..++.+|.| |.++.|++
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d--------G~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD--------GSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC--------Cccceeeee
Confidence 56888899999999988765433 55677877666553 48999999987765 56666655
Q ss_pred ----CCCcEEEEEeCCCCceEEeeeec
Q 000781 707 ----KTGARERVLRGTASHSMFDHFCK 729 (1288)
Q Consensus 707 ----~tg~l~~~l~GH~~~vi~~~~~~ 729 (1288)
+.-.|++..+.|..+-..+-.|.
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~ 292 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCH 292 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeec
Confidence 33455667777874443333464
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.27 E-value=1.1e+02 Score=36.42 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=69.0
Q ss_pred cCCCCEEEEEe----------CCCeEEEEECCCCeeEEEeeCCCC----cCCCceeeeeCCCCCceEEEEeeccCCcccc
Q 000781 99 SLDNGALISAC----------TDGVLCVWSRSSGHCRRRRKLPPW----VGSPSVICTLPSNPRYVCIGCCFIDTNQLSD 164 (1288)
Q Consensus 99 s~d~~~LvS~s----------~DG~l~vWdl~~G~c~~~~~l~~~----~~~~s~I~~l~~~~~~~~l~c~g~~~~~~~~ 164 (1288)
++|++.+.+++ ..-.|.+||..+=.-...+.+|+- .........+..+.++..+.-..
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-------- 115 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-------- 115 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES--------
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC--------
Confidence 67788787654 456899999998877777777731 11222333444455555554444
Q ss_pred cccccccccccccccccCCCCCCCCceEEEEecCCceEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEE
Q 000781 165 HHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQL 244 (1288)
Q Consensus 165 ~~~~~~~~g~~~~~d~~~~~~~~~~~~I~i~D~~tl~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ik 244 (1288)
+...|-|+|....+++..+.- .-|..+...+ +.-+.+.+.||.+.
T Consensus 116 -----------------------Pa~SVtVVDl~~~kvv~ei~~-------PGC~~iyP~~-----~~~F~~lC~DGsl~ 160 (342)
T PF06433_consen 116 -----------------------PATSVTVVDLAAKKVVGEIDT-------PGCWLIYPSG-----NRGFSMLCGDGSLL 160 (342)
T ss_dssp -----------------------SSEEEEEEETTTTEEEEEEEG-------TSEEEEEEEE-----TTEEEEEETTSCEE
T ss_pred -----------------------CCCeEEEEECCCCceeeeecC-------CCEEEEEecC-----CCceEEEecCCceE
Confidence 678899999999999877765 2344444332 23577777777776
Q ss_pred EeeccC
Q 000781 245 VPISKE 250 (1288)
Q Consensus 245 vW~l~~ 250 (1288)
--.++.
T Consensus 161 ~v~Ld~ 166 (342)
T PF06433_consen 161 TVTLDA 166 (342)
T ss_dssp EEEETS
T ss_pred EEEECC
Confidence 667764
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.20 E-value=16 Score=41.15 Aligned_cols=108 Identities=19% Similarity=0.057 Sum_probs=75.7
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~ 671 (1288)
.+++-||..+.++--|..+|+.+-.-. -...|.+-++- - |+.++-|+..+-+.+.+.++|.....|..-. .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-v------gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-V------GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-E------CCEEEEEEccCcEEEEEecchhheeeeeehh-h
Confidence 567777777777777777776543211 12233333322 1 6889999999999999999998877776443 3
Q ss_pred c-EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 672 P-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 672 V-~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
| ..-...+++..+.+|+.| ++.+.-|.++..++...+
T Consensus 95 vk~~a~~d~~~glIycgshd--------~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHD--------GNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hccceEEcCCCceEEEecCC--------CcEEEecccccceEEecc
Confidence 3 245667889999986654 899999999988876643
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=83.06 E-value=29 Score=44.08 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=64.5
Q ss_pred CCcEEEEeCCC----C-ceEEEEeccCcCEEEEEECCCCCCCCCCCEEE-EEECCCcEEEEECCCcee------------
Q 000781 600 DCSIRIWDLGS----G-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVGEDFSVALASLETLRV------------ 661 (1288)
Q Consensus 600 D~tI~vWDl~t----g-~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~-Sgs~DgsV~lWdl~t~~~------------ 661 (1288)
+++|.+.|..+ + +.+..+. -......+.++|+ |++++ ++..+.+|.|.|+++.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 67899999988 3 3444443 3456788999999 67555 555699999999987552
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 662 l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
+....- ...+...+|+++|....+... |..|-.||+.+
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~--------dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFL--------DSQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEee--------cceeEEEehHH
Confidence 222222 224567899999875554443 47999999976
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.49 E-value=33 Score=43.62 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=43.0
Q ss_pred CCCcEEEEECCC-----ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 647 EDFSVALASLET-----LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 647 ~DgsV~lWdl~t-----~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
.++.|.+.|.++ .+.+..++- ...+..|.++|||+++++++.- +.+|.|.|+.+.+
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVankl-------S~tVSVIDv~k~k 354 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKL-------SPTVTVIDVRKLD 354 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCC-------CCcEEEEEChhhh
Confidence 367899999998 455555543 3477899999999999975543 5799999998754
No 346
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.35 E-value=11 Score=46.06 Aligned_cols=131 Identities=13% Similarity=0.051 Sum_probs=86.3
Q ss_pred ccCCceeEEEEecCCcCEEEEEEeecccCCCC-CccCcEEEEEECCCcEEEEeCCCC-c-eEEEEeccC----cCEEEEE
Q 000781 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG-WSFNEVLVSGSMDCSIRIWDLGSG-N-LITVMHHHV----APVRQII 628 (1288)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG-~~~~~~L~SGs~D~tI~vWDl~tg-~-~l~~~~~H~----~~V~~l~ 628 (1288)
|++.|+.+....-|.. |+-+.+.|. -++ .-....-+.|=.|..|+-||.+-. + .+..-.+|. ..-.|.+
T Consensus 362 DIE~GKIVeEWk~~~d-i~mv~~t~d---~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a 437 (644)
T KOG2395|consen 362 DIERGKIVEEWKFEDD-INMVDITPD---FKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA 437 (644)
T ss_pred ecccceeeeEeeccCC-cceeeccCC---cchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee
Confidence 5888888888887766 666667431 111 001123355778999999998732 2 222222221 2234444
Q ss_pred ECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 629 ~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
-.- ..+|+.||.+|.||+||--..+.-..|+|-..+|..|..+.+|++|++.|. ..+-+-++
T Consensus 438 TT~-------sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~---------tyLlLi~t 499 (644)
T KOG2395|consen 438 TTE-------SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK---------TYLLLIDT 499 (644)
T ss_pred ecC-------CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc---------cEEEEEEE
Confidence 433 358999999999999997544555667888889999999999999996553 36666654
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.81 E-value=14 Score=48.39 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=75.5
Q ss_pred CcceecccCCCc-EEEEEeeecCccc---CCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEE---EEecCCcC
Q 000781 500 DGRDDFVHKEKI-VSSSMVISESFYA---PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ---YFLGHTGA 572 (1288)
Q Consensus 500 ~~~~~~~~h~~~-Vts~~~is~~~~~---p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~---~l~gH~~~ 572 (1288)
+.+..|.-|... |.. |.++.++. +...++|-.+..++- ||+... ..+.+. ........
T Consensus 515 KVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfr--iDpR~~-----------~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 515 KVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFR--IDPRLS-----------GNKLVDSQSKQYSSKNN 579 (794)
T ss_pred cEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEE--eccCCC-----------CCceeeccccccccCCC
Confidence 344444444432 443 33443332 344678877777776 454321 111111 01123455
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc-eEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcE
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~-~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV 651 (1288)
..|++- +.+| +||.||.+|.||+||- .|+ ....|.+-..||..|..+.+ |++++..+. ..+
T Consensus 580 Fs~~aT-----t~~G-----~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~D------GkwilaTc~-tyL 641 (794)
T PF08553_consen 580 FSCFAT-----TEDG-----YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTAD------GKWILATCK-TYL 641 (794)
T ss_pred ceEEEe-----cCCc-----eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCC------CcEEEEeec-ceE
Confidence 677765 3455 8999999999999994 444 33446777899999999999 787776654 467
Q ss_pred EEEEC
Q 000781 652 ALASL 656 (1288)
Q Consensus 652 ~lWdl 656 (1288)
.|++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 77764
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.19 E-value=87 Score=37.95 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=69.6
Q ss_pred CCCCCccCcEEE-EEECCC----cEEEEeCCCCceEEE-EeccCcCEEEEEECCCCCCCCCCCEEEEEECCC--------
Q 000781 584 TAKGWSFNEVLV-SGSMDC----SIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF-------- 649 (1288)
Q Consensus 584 SpdG~~~~~~L~-SGs~D~----tI~vWDl~tg~~l~~-~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~Dg-------- 649 (1288)
|||| ++++ +-+..| ++++.|+.+|+.+.. +..- .. ..+.|.++ ++.|+....|.
T Consensus 132 Spdg----~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~-~~~~W~~d------~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 132 SPDG----KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KF-SSVSWSDD------GKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp TTTS----SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ES-EEEEECTT------SSEEEEEECSTTTSS-CCG
T ss_pred CCCC----CEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-cc-ceEEEeCC------CCEEEEEEeCcccccccCC
Confidence 6888 6544 444444 599999999987653 3221 11 23999998 67666665443
Q ss_pred ---cEEEEECCCcee--EEEecCCCCC--cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 650 ---SVALASLETLRV--ERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 650 ---sV~lWdl~t~~~--l~~l~gH~~~--V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
.|..|.+.+... ...+...... ...+..++++++|+..+.. +.. ...+++-|+..+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~--~~~--~s~v~~~d~~~~ 262 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS--GTS--ESEVYLLDLDDG 262 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES--SSS--EEEEEEEECCCT
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc--ccc--CCeEEEEecccc
Confidence 378888876532 3445443333 4588999999999876654 121 257899999875
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.60 E-value=1.1e+02 Score=34.76 Aligned_cols=107 Identities=14% Similarity=0.025 Sum_probs=73.8
Q ss_pred EEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 527 ~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
.+++|++.+.+...++. +|+.+..-. -..++.|-+.- -| ++++-|...+.+++-
T Consensus 25 ~v~igSHs~~~~avd~~---------------sG~~~We~i-lg~RiE~sa~v------vg----dfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQ---------------SGNLIWEAI-LGVRIECSAIV------VG----DFVVLGCYSGGLYFL 78 (354)
T ss_pred EEEEecCCceEEEecCC---------------CCcEEeehh-hCceeeeeeEE------EC----CEEEEEEccCcEEEE
Confidence 38999999988875533 333322110 12334443321 13 679999999999999
Q ss_pred eCCCCceEEEEeccCcCEE-EEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec
Q 000781 607 DLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 607 Dl~tg~~l~~~~~H~~~V~-~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
+.++|.....|..-. .|. .-...++ +..+.+|+.|++....|.++..|+...+
T Consensus 79 ~~~tGs~~w~f~~~~-~vk~~a~~d~~------~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILE-TVKVRAQCDFD------GGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred Eecchhheeeeeehh-hhccceEEcCC------CceEEEecCCCcEEEecccccceEEecc
Confidence 999998777775432 222 2234555 7899999999999999999999998765
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=80.23 E-value=0.79 Score=56.43 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=68.5
Q ss_pred cCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE-CCCc-eeEEEecC
Q 000781 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS-LETL-RVERMFPG 667 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd-l~t~-~~l~~l~g 667 (1288)
+.+++.+|...+.++++|++... .......+..|..+.+.|-. ++++|+-. |+.|.+|| .+.- .+++.+..
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~-----~nY~cs~~-dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFS-----PNYFCSNS-DGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCC-----CCceeccc-cCceeeccchhhhccHHHHHhh
Confidence 34889999999999999987332 12222345567777777731 57887776 99999999 4432 23333322
Q ss_pred CC----CCcEEEEEcCCCC-EEEEEecCCCcccCCCCeEEEEECC
Q 000781 668 HP----NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 668 H~----~~V~~V~~sp~~~-~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
.+ ..+..++|.|... .+++..+| .++|+.+|+.
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~ 275 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDIC 275 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccC-------cceEEEeccc
Confidence 22 2488999999764 44444444 3799999985
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.87 E-value=8.1 Score=48.59 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=76.6
Q ss_pred CcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCc
Q 000781 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1288)
Q Consensus 510 ~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~ 589 (1288)
..|.-.++.....+ ++.|+.-|.+++ |+..+.. . ......|-.+.+.....+ ++.
T Consensus 34 ~~v~lTc~dst~~~----l~~GsS~G~lyl--~~R~~~~--------~----~~~~~~~~~~~~~~~~vs-----~~e-- 88 (726)
T KOG3621|consen 34 ARVKLTCVDATEEY----LAMGSSAGSVYL--YNRHTGE--------M----RKLKNEGATGITCVRSVS-----SVE-- 88 (726)
T ss_pred ceEEEEEeecCCce----EEEecccceEEE--EecCchh--------h----hcccccCccceEEEEEec-----chh--
Confidence 44443344555566 999999999999 4322210 0 111122223334444443 333
Q ss_pred cCcEEEEEECCCcEEEEeCCCCce-----EEEE-eccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC
Q 000781 590 FNEVLVSGSMDCSIRIWDLGSGNL-----ITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1288)
Q Consensus 590 ~~~~L~SGs~D~tI~vWDl~tg~~-----l~~~-~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t 658 (1288)
.++|.|++.+.|.++-+..+.. +..+ +.|...|+++.|+++ +..+.+|..-|.|.+-.+..
T Consensus 89 --~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~------~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 89 --YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN------GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccc------ccEEeecCCCceEEEEEech
Confidence 7889999999999998875432 1222 237889999999999 89999999999999988877
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=77.88 E-value=5.6 Score=47.38 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=57.3
Q ss_pred CCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE-EecC-------C---
Q 000781 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPG-------H--- 668 (1288)
Q Consensus 600 D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~-~l~g-------H--- 668 (1288)
.+.+.++|+.+++....... ...+....|+|+ |+.++-+. |+.|.++++.+++..+ +..| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~------g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPD------GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SS------STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecC------CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 35788999999875444333 667889999999 88888876 5789999988775543 2222 0
Q ss_pred ------CCCcEEEEEcCCCCEEEEEecC
Q 000781 669 ------PNYPAKVVWDCPRGYIACLCRD 690 (1288)
Q Consensus 669 ------~~~V~~V~~sp~~~~L~tg~~D 690 (1288)
-+.-..+.|+||+++|+..-.|
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred eccccccccccceEECCCCCEEEEEEEC
Confidence 1123578899999999987766
No 353
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.55 E-value=33 Score=39.98 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=66.0
Q ss_pred cEEEEEECCCc-EEEEeCCCCceEEEEeccCcCE--EEEEECCCCCCCCCCCEEEEEEC-----CCcEEEEECC-CceeE
Q 000781 592 EVLVSGSMDCS-IRIWDLGSGNLITVMHHHVAPV--RQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-TLRVE 662 (1288)
Q Consensus 592 ~~L~SGs~D~t-I~vWDl~tg~~l~~~~~H~~~V--~~l~~sp~~~~~~~g~~l~Sgs~-----DgsV~lWdl~-t~~~l 662 (1288)
..++-+-.-|+ ..+||..+++..+.+....+.- ---.|+|+ |++|.+.=. .|.|-|||.+ +.+.+
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD------GRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC------CCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 55666666664 4688999888765543221111 12468898 888887643 5899999999 77888
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEe
Q 000781 663 RMFPGHPNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 663 ~~l~gH~~~V~~V~~sp~~~~L~tg~ 688 (1288)
..|..|--.+..+.+.||++.|+++-
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEc
Confidence 99998876778999999998888764
No 354
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.34 E-value=17 Score=45.98 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=27.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEEeeC
Q 000781 101 DNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1288)
Q Consensus 101 d~~~LvS~s~DG~l~vWdl~~G~c~~~~~l 130 (1288)
+..+|++.+.|++|++||+.+++|+....+
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 678999999999999999999999877655
No 355
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=74.60 E-value=80 Score=39.49 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=73.9
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcC--EEEEEECCCCCCCCCCCEEEEEE---------CCCcEEEEECCCce
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--VRQIILSPPQTEHPWSDCFLSVG---------EDFSVALASLETLR 660 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~--V~~l~~sp~~~~~~~g~~l~Sgs---------~DgsV~lWdl~t~~ 660 (1288)
..++.++.|+.|.-+|.++|+.+-++...... -..+.-+|.- .+..++.++ .++.+..+|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 57778889999999999999988776543221 0111112210 023344443 46889999999999
Q ss_pred eEEEecCCCC--------------------Cc-EEEEEcCCCCEEEEEecCCCcc------------cCCCCeEEEEECC
Q 000781 661 VERMFPGHPN--------------------YP-AKVVWDCPRGYIACLCRDHSRT------------SDAVDVLFIWDVK 707 (1288)
Q Consensus 661 ~l~~l~gH~~--------------------~V-~~V~~sp~~~~L~tg~~D~sgs------------sD~DgtV~VWDl~ 707 (1288)
.+-.+..... .+ ...++++.+..+++++.+ ++ .+.++.|+-.|++
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~--g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN--GSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC--CCCCccCCccCCCCCCceeeEEEEcCC
Confidence 8866643211 01 134555566778876644 21 1123589999999
Q ss_pred CCcEEEEEe
Q 000781 708 TGARERVLR 716 (1288)
Q Consensus 708 tg~l~~~l~ 716 (1288)
||+..-.++
T Consensus 265 tG~~~W~~~ 273 (488)
T cd00216 265 TGKVKWFYQ 273 (488)
T ss_pred CCCEEEEee
Confidence 999987764
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=74.07 E-value=8.4 Score=32.05 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=27.9
Q ss_pred CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 621 ~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
...|.++.|+|. .+++|.+..||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~------mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPT------MDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCC------CCEEEEEECCCeEEEEECC
Confidence 356999999999 8999999999999999883
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.85 E-value=68 Score=39.66 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=52.6
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~ 671 (1288)
..+|.-....+|+++.-...+...++... ..+..+-. |.+|+..+.+ .|.+||.++++.++.+... .
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---------G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~ 146 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---------GNLLGVKSSD-FICFYDWETGKLIRRIDVS--A 146 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----------SSSEEEEETT-EEEEE-TTT--EEEEESS---E
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---------CcEEEEECCC-CEEEEEhhHcceeeEEecC--C
Confidence 35777777889999633233322233221 12444432 3445555444 8999999999999998743 4
Q ss_pred cEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 672 V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
|..|.|++++.+++..+. .+++|++.+.
T Consensus 147 vk~V~Ws~~g~~val~t~---------~~i~il~~~~ 174 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTK---------DSIYILKYNL 174 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S----------SEEEEEE-H
T ss_pred CcEEEEECCCCEEEEEeC---------CeEEEEEecc
Confidence 899999999999997553 4888887643
No 358
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=73.27 E-value=1.6e+02 Score=36.96 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCcEEEEeCCCCceEEEEeccCcC--------------------E-EEEEECCCCCCCCCCCEEEEEECCC--------
Q 000781 599 MDCSIRIWDLGSGNLITVMHHHVAP--------------------V-RQIILSPPQTEHPWSDCFLSVGEDF-------- 649 (1288)
Q Consensus 599 ~D~tI~vWDl~tg~~l~~~~~H~~~--------------------V-~~l~~sp~~~~~~~g~~l~Sgs~Dg-------- 649 (1288)
.++.+.-.|..+|+.+-++...... | ...++.+. +..++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~------~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK------TNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC------CCEEEEECCCCCCCccCCc
Confidence 4678999999999987776542111 0 01222222 45666666554
Q ss_pred ----------cEEEEECCCceeEEEec--CCCC----CcEEEEEc----CCCC---EEEEEecCCCcccCCCCeEEEEEC
Q 000781 650 ----------SVALASLETLRVERMFP--GHPN----YPAKVVWD----CPRG---YIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 650 ----------sV~lWdl~t~~~l~~l~--gH~~----~V~~V~~s----p~~~---~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
+|.-+|.++|+.+-.++ .|.. ......+. -++. .+++++. +|.++..|.
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~--------~G~l~ald~ 318 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK--------NGFFYVLDR 318 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC--------CceEEEEEC
Confidence 79999999999886653 2211 00000111 1232 4554332 489999999
Q ss_pred CCCcEEEEEe
Q 000781 707 KTGARERVLR 716 (1288)
Q Consensus 707 ~tg~l~~~l~ 716 (1288)
++|+.+....
T Consensus 319 ~tG~~~W~~~ 328 (488)
T cd00216 319 TTGKLISARP 328 (488)
T ss_pred CCCcEeeEeE
Confidence 9999886543
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=72.50 E-value=3.4 Score=52.32 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=61.5
Q ss_pred CEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcE
Q 000781 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV 651 (1288)
.+++++|||. . -.|++|=.-|.+.+|...+.+....-..|..+|..+.|+|+ |.+++++..-|.|
T Consensus 61 hatSLCWHpe-----~----~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~------G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 61 HATSLCWHPE-----E----FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD------GTVLMTLDNPGSV 125 (1416)
T ss_pred ehhhhccChH-----H----HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC------CCeEEEcCCCcee
Confidence 3667999873 1 47888989999999998888776667789999999999999 8999999999999
Q ss_pred EEEECC
Q 000781 652 ALASLE 657 (1288)
Q Consensus 652 ~lWdl~ 657 (1288)
.+|.+.
T Consensus 126 ~lwr~d 131 (1416)
T KOG3617|consen 126 HLWRYD 131 (1416)
T ss_pred EEEEee
Confidence 999876
No 360
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.01 E-value=7 Score=50.23 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=89.9
Q ss_pred cCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCc
Q 000781 533 FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1288)
Q Consensus 533 ~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~ 612 (1288)
.-|+.+||+.|...+. +...-.++....-...+.-+.|+|-. ++. -++..+-.+++|++-++.+..
T Consensus 151 ~vg~lfVy~vd~l~G~--------iq~~l~v~~~~p~gs~~~~V~wcp~~--~~~----~~ic~~~~~~~i~lL~~~ra~ 216 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGE--------IQPQLEVTPITPYGSDPQLVSWCPIA--VNK----VYICYGLKGGEIRLLNINRAL 216 (1283)
T ss_pred HhhhhheeehHhhccc--------cccceEEeecCcCCCCcceeeecccc--ccc----ceeeeccCCCceeEeeechHH
Confidence 4478888877643221 22221223333333455566676532 222 677888888999987776543
Q ss_pred eEEEEeccCcCEEEEE-----------ECCCCCCCCCCCEEEEEECCCcEEEEECC-----CceeEEEecCCCCCc-EEE
Q 000781 613 LITVMHHHVAPVRQII-----------LSPPQTEHPWSDCFLSVGEDFSVALASLE-----TLRVERMFPGHPNYP-AKV 675 (1288)
Q Consensus 613 ~l~~~~~H~~~V~~l~-----------~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~-----t~~~l~~l~gH~~~V-~~V 675 (1288)
. .-|.+|...++.++ ++|| |..|+..+.||.++.|.+. ..+|++....|.... .|.
T Consensus 217 ~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpD------Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~ 289 (1283)
T KOG1916|consen 217 R-SLFRSHSQRVTDMAFFAEGVLKLASLSPD------GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCW 289 (1283)
T ss_pred H-HHHHhcCCCcccHHHHhhchhhheeeCCC------CcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceee
Confidence 2 33556766655544 4566 8999999999999999764 346777777776333 222
Q ss_pred EEcCCC---------CEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 676 VWDCPR---------GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 676 ~~sp~~---------~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
-++... .++++ ++|...-+++|.--..+|+
T Consensus 290 lc~~~~~~~v~i~~w~~~It-------ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 290 LCHKQEILVVSIGKWVLRIT-------TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccccCCccceeEEEEe-------cccCCcceeEeeccchhhh
Confidence 232211 24453 4455577899987665554
No 361
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=69.88 E-value=48 Score=42.51 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=68.8
Q ss_pred cEEEEEECCCcEEEEeCCCCceEE--EEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC---------ce
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLIT--VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET---------LR 660 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~--~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t---------~~ 660 (1288)
+..+.-+.-.++.|||.+.+.... .| ...+.|.++.|... ++++.+++++-.+.|.+|.-.. ..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst----~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTST----PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeec----CCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 333334444578999999887543 34 45789999999754 2389999999999999996421 12
Q ss_pred eEEE--ecCCC-CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 661 VERM--FPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 661 ~l~~--l~gH~-~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
++.. +..|+ .+|.+..|.++|.+++ |++ +.++|+|-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV-------~sG---Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVV-------GSG---NQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEE-------EeC---CEEEEECC
Confidence 2322 23444 5789999999987776 222 58999874
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=68.91 E-value=42 Score=41.21 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCCCCccCcEEEEEECCCcE--EEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-CC--cEEEEECCC
Q 000781 584 TAKGWSFNEVLVSGSMDCSI--RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLET 658 (1288)
Q Consensus 584 SpdG~~~~~~L~SGs~D~tI--~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-Dg--sV~lWdl~t 658 (1288)
+||| ..++++...|+.. .+.|+..+. +.++..-.+.-+.=.|+|+ |+.++-.++ .| .|.+.|++.
T Consensus 246 spDG---~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spd------G~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 246 SPDG---SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPD------GSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCCC---CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCC------CCEEEEEeCCCCCcceEEECCCC
Confidence 5888 4677888888865 555766665 3344433333334557777 777666554 44 455556665
Q ss_pred ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 659 ~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
+... .+.-....-..-.|+|+|++++..+.. +.+-.|.+.|+.++.-++.+.
T Consensus 316 ~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~-----~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 316 SQVT-RLTFSGGGNSNPVWSPDGDKIVFESSS-----GGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred Ccee-EeeccCCCCcCccCCCCCCEEEEEecc-----CCceeeEEeccCCCCcEEEcc
Confidence 5542 222222222267899999999865422 111236777776665455544
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=66.96 E-value=2.2e+02 Score=32.07 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=84.5
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEe
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWD 607 (1288)
++.|+++| +++...+. ..+..... +...|..+..-| +- +.++.= .|+.+.+++
T Consensus 10 L~vGt~~G-l~~~~~~~--------------~~~~~~i~--~~~~I~ql~vl~-----~~----~~llvL-sd~~l~~~~ 62 (275)
T PF00780_consen 10 LLVGTEDG-LYVYDLSD--------------PSKPTRIL--KLSSITQLSVLP-----EL----NLLLVL-SDGQLYVYD 62 (275)
T ss_pred EEEEECCC-EEEEEecC--------------CccceeEe--ecceEEEEEEec-----cc----CEEEEE-cCCccEEEE
Confidence 99999998 77755410 11122222 233488888854 22 333333 359999999
Q ss_pred CCCCceEEE--------------EeccCcCEEEEE-ECCCCCCCCCCCEEEEEECCCcEEEEECCCc-----eeEEEecC
Q 000781 608 LGSGNLITV--------------MHHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFPG 667 (1288)
Q Consensus 608 l~tg~~l~~--------------~~~H~~~V~~l~-~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-----~~l~~l~g 667 (1288)
+..-..... -......+...+ -... .+...+.+...++|.+|..... +..+.+.-
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l 137 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL 137 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeecccc-----ccceEEEEEECCEEEEEEEECCcccccceeEEEEc
Confidence 875443221 111233455444 1111 1455556666669999988653 34455543
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEE
Q 000781 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1288)
Q Consensus 668 H~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l 715 (1288)
...+..++|. ++.+++|.. +...+.|+.++.....+
T Consensus 138 -p~~~~~i~~~--~~~i~v~~~---------~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 -PDPPSSIAFL--GNKICVGTS---------KGFYLIDLNTGSPSELL 173 (275)
T ss_pred -CCCcEEEEEe--CCEEEEEeC---------CceEEEecCCCCceEEe
Confidence 3578899998 567776543 37889999988765544
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=66.39 E-value=2.6e+02 Score=32.61 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=74.7
Q ss_pred ceEEEEecCCc----eEEEEEeccccccCCceEEEEEeccCCCCcceEEEEecCCcEEEEeeccCCccccccCCcccccC
Q 000781 190 CTLVIVDTYGL----TIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSS 265 (1288)
Q Consensus 190 ~~I~i~D~~tl----~vl~~~~~~~~~~~~is~l~v~~~~~~~~~~~~lls~s~d~~ikvW~l~~~~~~~~~~~~l~~~~ 265 (1288)
+.|++++.... .-+..+... ...++|.+++... +.+++ +.++.+.++++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~-------~~lv~--~~g~~l~v~~l~~~~------------- 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN-------GRLVV--AVGNKLYVYDLDNSK------------- 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET-------TEEEE--EETTEEEEEEEETTS-------------
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC-------CEEEE--eecCEEEEEEccCcc-------------
Confidence 88999998773 122222221 1357799988873 23333 346888899999741
Q ss_pred cccceeEeecCcccCceEEEEecCCCEEEEEecCce--EEeecCCCcccceeeeeecceeecCCCCCcceEEEEEeeccc
Q 000781 266 SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVV 343 (1288)
Q Consensus 266 ~~~~~v~~~~~~~~~v~~Vs~s~dg~~i~~v~~~~~--i~~~l~~~~~~g~~s~~~s~l~~~~~~~~~~~~gg~fl~~~d 343 (1288)
.+.....+......+++...++++++.-.-+. ++.+-+.. ..+ ..++.... ...+....|+.+.+
T Consensus 119 ----~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~---~~l----~~va~d~~--~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 119 ----TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN---NKL----ILVARDYQ--PRWVTAAEFLVDED 185 (321)
T ss_dssp ----SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT---E-E----EEEEEESS---BEEEEEEEE-SSS
T ss_pred ----cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC---CEE----EEEEecCC--CccEEEEEEecCCc
Confidence 01111112222356667777777776655555 55442222 112 22333322 34456666762223
Q ss_pred ccccccccccccccceeEEEEeCCCCEEEEEEcC
Q 000781 344 AEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY 377 (1288)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~vws~dG~~~ly~l~~ 377 (1288)
.+++.+.+|.+.+++.+.
T Consensus 186 ----------------~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 186 ----------------TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ----------------EEEEEETTSEEEEEEE-S
T ss_pred ----------------EEEEEcCCCeEEEEEECC
Confidence 789999999999998874
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.84 E-value=32 Score=41.92 Aligned_cols=108 Identities=17% Similarity=0.051 Sum_probs=66.2
Q ss_pred EEeCCCCCCceEEEEEEeCCCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEeccccccccCccccccc
Q 000781 8 CIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1288)
Q Consensus 8 ~lw~~~~p~h~VTala~spdg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~~s~~~~~~~~~~~~~~ 87 (1288)
+.|+=.+..-.+.+++++|++++.|+.-.=|.|.|+|+.. ...++|..|-+..=...-.... .+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-----~~vvrmWKGYRdAqc~wi~~~~-----~~~~---- 364 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-----GIVVRMWKGYRDAQCGWIEVPE-----EGDR---- 364 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-----ChhhhhhccCccceEEEEEeec-----cccc----
Confidence 3444455556699999999999888876679999999996 5677788887653222111011 0000
Q ss_pred ccccCcccccc-cCCCCEEEEE-eCCCeEEEEECCCCeeEEEeeC
Q 000781 88 AENSSNVMGKS-SLDNGALISA-CTDGVLCVWSRSSGHCRRRRKL 130 (1288)
Q Consensus 88 ~~~~~~~~~~~-s~d~~~LvS~-s~DG~l~vWdl~~G~c~~~~~l 130 (1288)
+.+....... .....+|+.- -.-|.|-||++..|..+.....
T Consensus 365 -~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 365 -DRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred -ccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 0001111111 2223445444 4689999999999998876654
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=64.81 E-value=1.4e+02 Score=35.97 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=78.6
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE--CCCcEEEEECCCceeEEEecCCC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG--EDFSVALASLETLRVERMFPGHP 669 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs--~DgsV~lWdl~t~~~l~~l~gH~ 669 (1288)
+..+....+..|.+.|..+.+..+....-. .-..++++|++ +...++-+ .++++.+.|-.+++.+.....-.
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~-----~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~ 160 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDG-----KYVYVANAGNGNNTVSVIDAATNKVTATIPVGN 160 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCC-----CEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence 577777778999999988777766654322 56688899983 24444444 47999999999999887754332
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 670 ~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
....++++|++..+++.-.+ ++.|.+.|..+....+
T Consensus 161 -~P~~~a~~p~g~~vyv~~~~-------~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 161 -TPTGVAVDPDGNKVYVTNSD-------DNTVSVIDTSGNSVVR 196 (381)
T ss_pred -CcceEEECCCCCeEEEEecC-------CCeEEEEeCCCcceec
Confidence 33899999999988864322 5899999977665553
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=61.76 E-value=2.2e+02 Score=34.40 Aligned_cols=122 Identities=15% Similarity=0.212 Sum_probs=85.0
Q ss_pred CEEEEEEeecccCCCCCccCcEEEEEE--CCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC-EEEEEECC
Q 000781 572 AVLCLAAHRMVGTAKGWSFNEVLVSGS--MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGED 648 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~~L~SGs--~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~-~l~Sgs~D 648 (1288)
....+++ ++++ +...++-. .++++.+.|..+++.+.....-..+ ..+++.|+ |+ ..++-..+
T Consensus 117 ~P~~~~~-----~~~~---~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~------g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAV-----DPDG---KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD------GNKVYVTNSDD 181 (381)
T ss_pred CCceEEE-----CCCC---CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC------CCeEEEEecCC
Confidence 4456777 4566 23334444 3789999999999888775554456 88999999 66 45555689
Q ss_pred CcEEEEECCCceeEE-----EecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 649 FSVALASLETLRVER-----MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~-----~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
+.|.+.|.+.....+ ...- ......+.++|++.++.+.... +. |+.+.+-|..++.....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~---~~--~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDG---SG--SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEecc---CC--CceEEEEeCCCceEEEe
Confidence 999999987766653 1111 2356789999999988876543 11 36899999998877655
No 368
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=61.52 E-value=42 Score=41.23 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC-EEEEEECCCcEEEE--ECCCceeEEEecCCCCCcEEEEE
Q 000781 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALA--SLETLRVERMFPGHPNYPAKVVW 677 (1288)
Q Consensus 601 ~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~-~l~Sgs~DgsV~lW--dl~t~~~l~~l~gH~~~V~~V~~ 677 (1288)
..+.++|+.+++...... ..+.-..-.|+|+ |+ .+.+...|+...|| |+..+...+ +..-.+.-..=.|
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD------G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD------GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSW 289 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCC------CCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccC
Confidence 469999999887544332 2233345678999 55 56666778766655 666655333 3322222235679
Q ss_pred cCCCCEEEEEecCCCcccCCCC--eEEEEECCCCcE
Q 000781 678 DCPRGYIACLCRDHSRTSDAVD--VLFIWDVKTGAR 711 (1288)
Q Consensus 678 sp~~~~L~tg~~D~sgssD~Dg--tV~VWDl~tg~l 711 (1288)
+|+|++++-.+ |+.| .|++.|.+.++.
T Consensus 290 spdG~~ivf~S-------dr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 290 SPDGSKIVFTS-------DRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCCCCEEEEEe-------CCCCCcceEEECCCCCce
Confidence 99999999543 3334 455666766655
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=60.17 E-value=1.7e+02 Score=34.48 Aligned_cols=112 Identities=9% Similarity=0.004 Sum_probs=69.2
Q ss_pred eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCC--Cc----e-EEEEeccCcCEEEEEECCCC
Q 000781 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GN----L-ITVMHHHVAPVRQIILSPPQ 633 (1288)
Q Consensus 561 ~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~t--g~----~-l~~~~~H~~~V~~l~~sp~~ 633 (1288)
...+.+.+|-..-+.|+| |||| +.+.++=+..+.|.-+++.. +. . ...+..+.+.--.++...+
T Consensus 153 ~~~~l~~~~~~~~NGla~-----SpDg---~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad- 223 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAF-----SPDG---KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD- 223 (307)
T ss_pred CEEEeecCcEEecCceEE-----CCCC---CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC-
Confidence 345555566666788999 5788 23455555557888777652 21 1 1112223344445555555
Q ss_pred CCCCCCCEEEEEECCC-cEEEEECCCceeEEEecCCCCCcEEEEEc-CCCCEEEEE
Q 000781 634 TEHPWSDCFLSVGEDF-SVALASLETLRVERMFPGHPNYPAKVVWD-CPRGYIACL 687 (1288)
Q Consensus 634 ~~~~~g~~l~Sgs~Dg-sV~lWdl~t~~~l~~l~gH~~~V~~V~~s-p~~~~L~tg 687 (1288)
|.+.+++-.+| .|.+|+.+ ++.+..+.-....+++++|- |+.+.|++.
T Consensus 224 -----G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 224 -----GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred -----CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 66665555554 99999998 88888877665688888884 445566543
No 370
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=58.87 E-value=2.3e+02 Score=32.60 Aligned_cols=119 Identities=16% Similarity=0.065 Sum_probs=72.4
Q ss_pred CEEEEEEeecccCCCCCccCcEEEEEECCC--cEEEEeCCCCceEEEEeccC-cCEEEEEECCCCCCCCCCCEEEEEECC
Q 000781 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGED 648 (1288)
Q Consensus 572 ~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~--tI~vWDl~tg~~l~~~~~H~-~~V~~l~~sp~~~~~~~g~~l~Sgs~D 648 (1288)
..-.+.|. .+| .++-|.|.-| .|+.+|+.+|+.+....-.. -.=-.++... +..+.-.-.+
T Consensus 46 FTQGL~~~-----~~g----~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-------d~l~qLTWk~ 109 (264)
T PF05096_consen 46 FTQGLEFL-----DDG----TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-------DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEE-----ETT----EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-------TEEEEEESSS
T ss_pred cCccEEec-----CCC----EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-------CEEEEEEecC
Confidence 35567772 255 7888888777 79999999998765543211 1111222221 2334444557
Q ss_pred CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
+...+||.++.+.+.+++-. +.=+.++. +++.|+. +|....++.+|.++.+..+.+.-
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~--------SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIM--------SDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEE--------E-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CeEEEEccccceEEEEEecC-CcceEEEc--CCCEEEE--------ECCccceEEECCcccceEEEEEE
Confidence 88999999999999888643 45567774 4555553 33346999999999888877653
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.04 E-value=2.1e+02 Score=32.24 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=60.2
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE--CCCc-----eeEEEecCC----CCCcEEEEEcCCCCEEEEEecCC
Q 000781 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS--LETL-----RVERMFPGH----PNYPAKVVWDCPRGYIACLCRDH 691 (1288)
Q Consensus 623 ~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd--l~t~-----~~l~~l~gH----~~~V~~V~~sp~~~~L~tg~~D~ 691 (1288)
--+.++|..+. ......-+.+.+|.-|| ..+| +.+..++.. ...+-.++.+.+|.+.+ ++.+
T Consensus 159 IsNgl~Wd~d~-----K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~V-a~~n- 231 (310)
T KOG4499|consen 159 ISNGLAWDSDA-----KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYV-ATFN- 231 (310)
T ss_pred CCccccccccC-----cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEE-EEec-
Confidence 34567777551 23445567788998888 5554 344444431 12344566666666555 3333
Q ss_pred CcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeeee
Q 000781 692 SRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1288)
Q Consensus 692 sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~~ 728 (1288)
-++|...|..||+.+.++.-.+.+++++.|-
T Consensus 232 ------g~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 232 ------GGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ------CcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 2799999999999999998888888876553
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=57.21 E-value=1.5e+02 Score=37.48 Aligned_cols=60 Identities=12% Similarity=-0.080 Sum_probs=37.3
Q ss_pred CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
+.+.-+|+.+++.+-..+............ .+..++.+ +.||.++.+|.+||+.+..++-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g--------~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYG--------TLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEE--------CCCCeEEEEECCCCCEeEEEeC
Confidence 568888888888876554322111111111 34455532 3359999999999999877654
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=56.60 E-value=29 Score=40.98 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=43.1
Q ss_pred cEEEEECCCceeEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 650 sV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~-~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
.|-++|+.+++.+..++.- ..+.+|..+.+.+ +|++.+ ..++.+.|||..||++++++.+
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~-------~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALS-------AGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEE-------TTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEc-------CCCCeEEEEeCcCCcEEeehhc
Confidence 4778899999999888732 2577899988776 565322 2258999999999999999874
No 374
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.48 E-value=63 Score=35.99 Aligned_cols=61 Identities=7% Similarity=-0.071 Sum_probs=42.3
Q ss_pred CCEEEEEECCCcEEEEECCCceeEEEe-------c-------CCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEE
Q 000781 639 SDCFLSVGEDFSVALASLETLRVERMF-------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~~~l~~l-------~-------gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VW 704 (1288)
++++++...+|.+.+||+++++++..- . .....|..+..+.+|.-+++-+ +|..|.|
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls---------ng~~y~y 92 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS---------NGDSYSY 92 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe---------CCCEEEe
Confidence 678999999999999999998875432 1 2334566777777776666422 2566777
Q ss_pred ECCC
Q 000781 705 DVKT 708 (1288)
Q Consensus 705 Dl~t 708 (1288)
+..-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 7643
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=55.90 E-value=91 Score=38.16 Aligned_cols=96 Identities=8% Similarity=0.007 Sum_probs=62.7
Q ss_pred eEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCC-----
Q 000781 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH----- 636 (1288)
Q Consensus 562 ~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~----- 636 (1288)
....|......+.++.. +|++ ++.+....=|.|.++|+.++..++.++|..+.=..-...++...+
T Consensus 299 ~r~~l~D~~R~~~~i~~-----sP~~----~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~ 369 (415)
T PF14655_consen 299 MRFGLPDSKREGESICL-----SPSG----RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNS 369 (415)
T ss_pred eEEeeccCCceEEEEEE-----CCCC----CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccc
Confidence 34455555666788888 4677 888888777899999999999988888865532221111111000
Q ss_pred -------CCCC-EEEEEECCCcEEEEECCCceeEEEec
Q 000781 637 -------PWSD-CFLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 637 -------~~g~-~l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
+... +++-+-.-|.|-||+++.|..+..+.
T Consensus 370 ~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 370 NSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 0011 23345567899999999888877664
No 376
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=55.71 E-value=4.7e+02 Score=32.03 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=44.1
Q ss_pred CEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCC-
Q 000781 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT- 718 (1288)
Q Consensus 640 ~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH- 718 (1288)
...+....++.+.+.+-...+. +.. .+++..++.+|++++++.-. + +|.+.|...+-.+....+.-.
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i~~-~~~i~~iavSpng~~iAl~t-------~-~g~l~v~ssDf~~~~~e~~~~~ 258 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---IDS-DGPIIKIAVSPNGKFIALFT-------D-SGNLWVVSSDFSEKLCEFDTDS 258 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---ccC-CCCeEEEEECCCCCEEEEEE-------C-CCCEEEEECcccceeEEeecCc
Confidence 3444445555555443322211 222 24789999999999998532 2 478888876555555544433
Q ss_pred CCceEEeeeec
Q 000781 719 ASHSMFDHFCK 729 (1288)
Q Consensus 719 ~~~vi~~~~~~ 729 (1288)
........+|-
T Consensus 259 ~~~p~~~~WCG 269 (410)
T PF04841_consen 259 KSPPKQMAWCG 269 (410)
T ss_pred CCCCcEEEEEC
Confidence 23334445664
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=54.23 E-value=1.1e+02 Score=37.44 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCcEEEEeCCCCceEEEEeccC--cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEEC-CCc----eeEEEecC-----
Q 000781 600 DCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL-ETL----RVERMFPG----- 667 (1288)
Q Consensus 600 D~tI~vWDl~tg~~l~~~~~H~--~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl-~t~----~~l~~l~g----- 667 (1288)
-.++.+||+.+.+.++++..-. .....|.|..+.. ....|+.+....+|..|-- +.+ +.+..++.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~---~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPD---ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT-----EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCC---ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 3689999999999999987543 3466777765521 1346777777777766654 333 22222221
Q ss_pred C------------CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 668 H------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 668 H------------~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
- ..-|+.|..+.|+++|.+.|-- +|.||.||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-------~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL-------HGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETT-------TTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEccc-------CCcEEEEecCC
Confidence 1 2346899999999999986543 58999999965
No 378
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=52.81 E-value=45 Score=42.24 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=28.9
Q ss_pred cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec
Q 000781 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1288)
Q Consensus 622 ~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~ 666 (1288)
+.+..+.+.+.+. ....++++.+.|+++|+||+++++++.+..
T Consensus 215 ~~~~~~~~~~~~~--~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEI--NDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-------ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEeccee--CCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3456666665100 015789999999999999999999977653
No 379
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=52.29 E-value=4e+02 Score=32.28 Aligned_cols=178 Identities=12% Similarity=0.109 Sum_probs=82.6
Q ss_pred EEEEeeecCcccCCE---EEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcC-EEEEEEeecccCCCCC
Q 000781 513 SSSMVISESFYAPYA---IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGW 588 (1288)
Q Consensus 513 ts~~~is~~~~~p~~---lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~-V~~L~~~p~~~SpdG~ 588 (1288)
+.-.|..+.+|.+++ |+.+..||.-.++..| +++++..+ |..+.+. .....+ +|++
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lD-------------L~t~~i~Q-LTdg~g~~~~g~~~-----s~~~- 92 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLD-------------LATGEITQ-LTDGPGDNTFGGFL-----SPDD- 92 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEE-------------TTT-EEEE----SS-B-TTT-EE------TTS-
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEE-------------cccCEEEE-CccCCCCCccceEE-----ecCC-
Confidence 344566666666554 5555557776665555 55555433 3333221 212333 3444
Q ss_pred ccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE----------------------
Q 000781 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---------------------- 646 (1288)
Q Consensus 589 ~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs---------------------- 646 (1288)
+.++=-.....++--|+.+.+....+....+.+-...|..+.. +..++-.-
T Consensus 93 ---~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d----~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 93 ---RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSD----CTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp ---SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TT----SSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred ---CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCC----ccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 5554444557888889999886666666666665455532210 33333221
Q ss_pred CCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCe-EEEEECCC-CcEEEEEeCCCCce
Q 000781 647 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV-LFIWDVKT-GARERVLRGTASHS 722 (1288)
Q Consensus 647 ~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~Dgt-V~VWDl~t-g~l~~~l~GH~~~v 722 (1288)
....|.--|+++|+....+.. ...+.-+.|+|....++.=|.. |-. |.. -|||-+++ |.-.+.+..|....
T Consensus 166 p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHE--Gpw--~~Vd~RiW~i~~dg~~~~~v~~~~~~e 238 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHE--GPW--DLVDQRIWTINTDGSNVKKVHRRMEGE 238 (386)
T ss_dssp --EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE---S-T--TTSS-SEEEEETTS---EESS---TTE
T ss_pred CCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEecc--CCc--ceeceEEEEEEcCCCcceeeecCCCCc
Confidence 123455557777776555543 2467789999999888887765 333 343 48897754 55555555554333
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=50.56 E-value=3.8e+02 Score=34.50 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=54.4
Q ss_pred EEEEEEeecccCCCCCccCcEEEEEECC------------CcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCC
Q 000781 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMD------------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1288)
Q Consensus 573 V~~L~~~p~~~SpdG~~~~~~L~SGs~D------------~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~ 640 (1288)
.+.-.| +||| ..+.+.+.. +.+.+.++..++... ...+.|..+.|+|| |.
T Consensus 399 ~t~PsW-----spDG----~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD------G~ 460 (591)
T PRK13616 399 LTRPSW-----SLDA----DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD------GV 460 (591)
T ss_pred CCCceE-----CCCC----CceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC------CC
Confidence 666777 5677 555554322 233333554444322 33567999999999 77
Q ss_pred EEEEEECCCcEEE---EECCCcee-E---EEe-cCCCCCcEEEEEcCCCCEEE
Q 000781 641 CFLSVGEDFSVAL---ASLETLRV-E---RMF-PGHPNYPAKVVWDCPRGYIA 685 (1288)
Q Consensus 641 ~l~Sgs~DgsV~l---Wdl~t~~~-l---~~l-~gH~~~V~~V~~sp~~~~L~ 685 (1288)
.++-.. ++.|.+ -....|.. + ..+ .+-...+..+.|.+++.+++
T Consensus 461 RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 461 RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEE
Confidence 777665 466666 44344531 1 112 22233467899999888553
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=1.2e+02 Score=37.68 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=45.3
Q ss_pred cEEEEEECCCcEEEEeCCCCce-EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNL-ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~-l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
-+++.||.+|.||+||- .+.. ...|.+-..+|..|..+.+ |..|++.+ +..+.|-++.
T Consensus 442 G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtad------GKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTAD------GKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeecc------CcEEEEec-ccEEEEEEEe
Confidence 48999999999999997 5544 3457888999999999998 77666554 5567777654
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=48.43 E-value=3.3e+02 Score=33.55 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCeEEEEECCCCeeEEEeeCCCCcCCCceeeeeC-CCCCceEEEEee
Q 000781 111 DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCF 156 (1288)
Q Consensus 111 DG~l~vWdl~~G~c~~~~~l~~~~~~~s~I~~l~-~~~~~~~l~c~g 156 (1288)
-.+|.+||+.+.+.++.+.+..--..|..|++++ +...+..+.|..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL 267 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL 267 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEec
Confidence 4589999999999999988863223577899998 566778888886
No 383
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=48.23 E-value=8.2e+02 Score=32.65 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=70.9
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEE-------------EEEECCCCCCCCCCCEEEEEEC----------C
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-------------QIILSPPQTEHPWSDCFLSVGE----------D 648 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~-------------~l~~sp~~~~~~~g~~l~Sgs~----------D 648 (1288)
..++.++.|+.+.-.|.++|+.+-.|. ..+.|. .+.-+|- ..+..++.|+. +
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~----V~~g~VIvG~~v~d~~~~~~~~ 335 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPL----VAGTTVVIGGRVADNYSTDEPS 335 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCE----EECCEEEEEecccccccccCCC
Confidence 578889999999999999999887773 223221 1111121 11345555543 6
Q ss_pred CcEEEEECCCceeEEEecC-CC----------------CCc-EEEEEcCCCCEEEEEecCCC----c------ccCCCCe
Q 000781 649 FSVALASLETLRVERMFPG-HP----------------NYP-AKVVWDCPRGYIACLCRDHS----R------TSDAVDV 700 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~~l~g-H~----------------~~V-~~V~~sp~~~~L~tg~~D~s----g------ssD~Dgt 700 (1288)
|.|+-+|.++|+.+-.+.. +. ..+ ...+++|....++.+..+.+ + -....++
T Consensus 336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 8899999999998866531 10 011 24456666666555332200 0 0011256
Q ss_pred EEEEECCCCcEEEEEeC
Q 000781 701 LFIWDVKTGARERVLRG 717 (1288)
Q Consensus 701 V~VWDl~tg~l~~~l~G 717 (1288)
|.-.|++||+..-.++-
T Consensus 416 lvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 416 LVALDATTGKERWVFQT 432 (764)
T ss_pred EEEEeCCCCceEEEecc
Confidence 66677888887766653
No 384
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=47.31 E-value=66 Score=26.41 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=26.0
Q ss_pred cCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCC
Q 000781 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1288)
Q Consensus 622 ~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t 658 (1288)
+.|+++.|+|+... .++++-.-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~---~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG---NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCc---ccEEEEEccCCeEEEEEccc
Confidence 56899999987310 15777777779999999995
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=47.10 E-value=1.4e+02 Score=38.48 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=53.4
Q ss_pred cCEEEEEEeecccCCCCCccCcEEEEEE------CCC--cEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEE
Q 000781 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGS------MDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1288)
Q Consensus 571 ~~V~~L~~~p~~~SpdG~~~~~~L~SGs------~D~--tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l 642 (1288)
..+...++ +||| +.++..- .|. .+.+++. .+.......+ ...+.-.|+|+ |..+
T Consensus 350 ~~vsspai-----SpdG----~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspD------G~~l 411 (591)
T PRK13616 350 GNITSAAL-----SRSG----RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLD------ADAV 411 (591)
T ss_pred cCcccceE-----CCCC----CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCC------CCce
Confidence 35666777 5788 5443333 344 4444454 2222222233 23778889998 6666
Q ss_pred EEEECC------------CcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEE
Q 000781 643 LSVGED------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1288)
Q Consensus 643 ~Sgs~D------------gsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~t 686 (1288)
.+.+.. +.+.+.+++.+.... .....|..+.|+|||..++.
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEE
Confidence 666432 233333444433322 22457999999999998885
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=46.83 E-value=2.2e+02 Score=35.95 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=71.5
Q ss_pred cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC-----CCceEEEEeccCc---CE--EEEEECCCCCCCC
Q 000781 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-----SGNLITVMHHHVA---PV--RQIILSPPQTEHP 637 (1288)
Q Consensus 568 gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~-----tg~~l~~~~~H~~---~V--~~l~~sp~~~~~~ 637 (1288)
|.-..|..+.|.|... . +..-++.-...+.|.||-+. +.+.+..-..+-+ +| ..+.|+|.
T Consensus 54 GqFEhV~GlsW~P~~~-~----~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk----- 123 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCT-A----DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK----- 123 (671)
T ss_pred eccceeeeeeecCccc-C----CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-----
Confidence 4445699999976431 2 22566777778899999875 3344433332221 11 24556666
Q ss_pred CCCEEEEEECCCcEEEEECCC--ceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 638 WSDCFLSVGEDFSVALASLET--LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 638 ~g~~l~Sgs~DgsV~lWdl~t--~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
...++.-..+..--+.+++. .+....+.+ .+.|.|.+|..||+.|+++-.+ + =--||||-.
T Consensus 124 -~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGS----s---LHSyiWd~~ 186 (671)
T PF15390_consen 124 -KAILTVLTARDVSVLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGS----S---LHSYIWDSA 186 (671)
T ss_pred -CceEEEEecCceeEeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCC----e---EEEEEecCc
Confidence 55554433333334555543 334444544 4689999999999999875321 1 356899853
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.62 E-value=2.2e+02 Score=32.03 Aligned_cols=91 Identities=7% Similarity=0.050 Sum_probs=59.4
Q ss_pred cEEEEEECCCcEEEEe--CCCCceE---EEEeccC-----cC-EEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCce
Q 000781 592 EVLVSGSMDCSIRIWD--LGSGNLI---TVMHHHV-----AP-VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWD--l~tg~~l---~~~~~H~-----~~-V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~ 660 (1288)
.+-+.-+.+.+|.-|| ..+|... ..|.... .. --.+++.-+ |.+++++-.-++|...|+.+|+
T Consensus 171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e------G~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE------GNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC------CcEEEEEecCcEEEEECCCCCc
Confidence 5667777888887787 4555421 1121111 00 011222223 7888888899999999999999
Q ss_pred eEEEecCCCCCcEEEEEcC-CCCEEEEEe
Q 000781 661 VERMFPGHPNYPAKVVWDC-PRGYIACLC 688 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp-~~~~L~tg~ 688 (1288)
.+..+.-....|++++|-. +-..+++.+
T Consensus 245 ~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 245 ILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9998877788999999964 334555533
No 388
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=44.78 E-value=5.6e+02 Score=29.80 Aligned_cols=112 Identities=10% Similarity=0.107 Sum_probs=69.0
Q ss_pred CCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCCCccccCCceeEEEEecCCcCEEEEEEeecccCCCCC
Q 000781 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1288)
Q Consensus 509 ~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~ 588 (1288)
.+.|+++... ..+ ++.| .++.+.+++++... +-.....+.. ...++++...
T Consensus 88 ~g~V~ai~~~--~~~----lv~~-~g~~l~v~~l~~~~------------~l~~~~~~~~-~~~i~sl~~~--------- 138 (321)
T PF03178_consen 88 KGPVTAICSF--NGR----LVVA-VGNKLYVYDLDNSK------------TLLKKAFYDS-PFYITSLSVF--------- 138 (321)
T ss_dssp SS-EEEEEEE--TTE----EEEE-ETTEEEEEEEETTS------------SEEEEEEE-B-SSSEEEEEEE---------
T ss_pred cCcceEhhhh--CCE----EEEe-ecCEEEEEEccCcc------------cchhhheecc-eEEEEEEecc---------
Confidence 4678886555 222 4554 56899998876221 1122333333 3377887763
Q ss_pred ccCcEEEEEECCCcEEEEeCCC-CceEEEEec--cCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC
Q 000781 589 SFNEVLVSGSMDCSIRIWDLGS-GNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1288)
Q Consensus 589 ~~~~~L~SGs~D~tI~vWDl~t-g~~l~~~~~--H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~ 657 (1288)
+++++.|.....+.++..+. +..+..+.. ....++++.+.++ ++.++.+..+|.+.++...
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d------~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD------EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S------SSEEEEEETTSEEEEEEE-
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC------CcEEEEEcCCCeEEEEEEC
Confidence 27899999999888875443 332333322 3456888888877 5699999999999999876
No 389
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=44.61 E-value=61 Score=25.22 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=25.0
Q ss_pred CCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeC
Q 000781 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1288)
Q Consensus 679 p~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~G 717 (1288)
|++++|++++.. +++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~-------~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSG-------SNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCC-------CCEEEEEECCCCeEEEEEEC
Confidence 578888876543 57999999999988877654
No 390
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=44.27 E-value=4.1e+02 Score=30.26 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred EEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccC-cCEEEEEECCCCCCCCCCCEE
Q 000781 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCF 642 (1288)
Q Consensus 564 ~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~-~~V~~l~~sp~~~~~~~g~~l 642 (1288)
+.+.|=...+..|.|+| .++ .+++.....+.|...+.. |+.++++.... +-.-.|++.-+ +.++
T Consensus 15 ~~l~g~~~e~SGLTy~p----d~~----tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~------~~~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP----DTG----TLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGN------GRYV 79 (248)
T ss_dssp EE-TT--S-EEEEEEET----TTT----EEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-ST------TEEE
T ss_pred eECCCccCCccccEEcC----CCC----eEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECC------CEEE
Q ss_pred EEEECCCcEEEEECCCce-----------eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 643 LSVGEDFSVALASLETLR-----------VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 643 ~Sgs~DgsV~lWdl~t~~-----------~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
++--.++.+.+.++.... .+.....+...+-.++|+|.++.|+++... .-.+++.++
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--------~P~~l~~~~ 147 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--------KPKRLYEVN 147 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--------SSEEEEEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--------CChhhEEEc
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=43.83 E-value=3.7e+02 Score=35.79 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=73.6
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcC--------EEEEEECCC--CC--------CCCCCCEEEEEECCCcEEE
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--------VRQIILSPP--QT--------EHPWSDCFLSVGEDFSVAL 653 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~--------V~~l~~sp~--~~--------~~~~g~~l~Sgs~DgsV~l 653 (1288)
..+..++.++.|.-.|..+|+.+-++..+... .+.+.+-.. .. -...+..++.+..|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 56777777888888888888887776543211 122222111 00 0012457888889999999
Q ss_pred EECCCceeEEEecCCCCCcE-------------EEEEcC--CCCEEEEEecC--CCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 654 ASLETLRVERMFPGHPNYPA-------------KVVWDC--PRGYIACLCRD--HSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 654 Wdl~t~~~l~~l~gH~~~V~-------------~V~~sp--~~~~L~tg~~D--~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
.|.++|+.+..|... +.|. .+.-.| .++.+++|+.. ..+...-+|.|+-+|.+||+++-.+.
T Consensus 275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999988766321 1110 111112 24567766521 00011124899999999999987664
No 392
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=42.20 E-value=2e+02 Score=31.96 Aligned_cols=101 Identities=19% Similarity=0.296 Sum_probs=64.8
Q ss_pred EEEEECCCcEEEEeCCC--CceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC------CcEEEE-ECCC----ce
Q 000781 594 LVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED------FSVALA-SLET----LR 660 (1288)
Q Consensus 594 L~SGs~D~tI~vWDl~t--g~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D------gsV~lW-dl~t----~~ 660 (1288)
|+.+...++|.+|++.. .+.+.+|..- +.|..+.++.. |++++|-=.+ ..+|+| |.+. .+
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~------GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEA------GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccc------cceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 33335567899999983 3466777654 88999999988 8999997432 266776 2221 12
Q ss_pred eEE-EecCC---------------------CCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 661 VER-MFPGH---------------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 661 ~l~-~l~gH---------------------~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
++. .+.|| ...+.+++-.|...-|++||. +++.+|.++.+.
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~~~ 166 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKYQT 166 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEEEE
Confidence 221 22232 125678888886666666654 499999886543
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.71 E-value=1.1e+02 Score=37.95 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=48.4
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCc-----------e
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-----------R 660 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~-----------~ 660 (1288)
.+|...+.+ .|.+||+.+++.++++... +|..+.|+++ +++++-.+.| ++.+++.+.. .
T Consensus 118 ~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~------g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~ 187 (443)
T PF04053_consen 118 NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD------GELVALVTKD-SIYILKYNLEAVAAIPEEGVED 187 (443)
T ss_dssp SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT------SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GG
T ss_pred cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC------CCEEEEEeCC-eEEEEEecchhcccccccCchh
Confidence 666666555 8999999999999999643 4999999999 7888877755 6777765433 0
Q ss_pred eEEEecCCCCCcEEEEEcCCCCEEE
Q 000781 661 VERMFPGHPNYPAKVVWDCPRGYIA 685 (1288)
Q Consensus 661 ~l~~l~gH~~~V~~V~~sp~~~~L~ 685 (1288)
....+.--...|.+.+|..+ -++.
T Consensus 188 ~f~~~~E~~~~IkSg~W~~d-~fiY 211 (443)
T PF04053_consen 188 AFELIHEISERIKSGCWVED-CFIY 211 (443)
T ss_dssp GEEEEEEE-S--SEEEEETT-EEEE
T ss_pred ceEEEEEecceeEEEEEEcC-EEEE
Confidence 22222211347888899866 4444
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=40.61 E-value=3.6e+02 Score=34.20 Aligned_cols=121 Identities=10% Similarity=-0.068 Sum_probs=69.8
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEeccC-cCEE---EEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEEecC
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVR---QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~-~~V~---~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~g 667 (1288)
..++.++.++.|.-.|..+|+.+-++.... ..+. +......+ ..-.+..++.++.|+.+.-.|.++|+.+-....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 466777778889999999998876664321 1111 11000000 001135677788899999999999998865542
Q ss_pred --CCCCcEEEEEcC--CCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEe
Q 000781 668 --HPNYPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 668 --H~~~V~~V~~sp--~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~ 716 (1288)
+... ..+.-.| .+..++++... +-.+.+|.|+-+|.+||+.+-.+.
T Consensus 149 ~~~~~~-~~~tssP~v~~g~Vivg~~~--~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAG-YTITAAPLVVKGKVITGISG--GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccc-ccccCCcEEECCEEEEeecc--cccCCCcEEEEEECCCCceeEecc
Confidence 1100 0111112 13455654321 111225899999999999886654
No 395
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.42 E-value=3.7e+02 Score=31.20 Aligned_cols=100 Identities=8% Similarity=0.076 Sum_probs=62.4
Q ss_pred CCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEE------CCCcEEEEECCCceeEEEecC-C----
Q 000781 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG------EDFSVALASLETLRVERMFPG-H---- 668 (1288)
Q Consensus 600 D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs------~DgsV~lWdl~t~~~l~~l~g-H---- 668 (1288)
-..|++||..+.+-..--.+-.+.|+++.|..+ .+.++.|. ....+..||+.+..- ..+.+ -
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~------~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~i 87 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASN------NQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSI 87 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecC------CEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccC
Confidence 346999998877655444455688999999855 56777775 467889999987654 23333 1
Q ss_pred CCCcEEEEEcC-CCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 669 PNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 669 ~~~V~~V~~sp-~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
.++|..+.+.. ++..+..++.. .+.+..|..||-.+.+
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~----~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRS----ANGSTFLMKYDGSSWS 126 (281)
T ss_pred CCcEEEEEeeccCCceEEEecee----cCCCceEEEEcCCceE
Confidence 35777777733 33334433321 2223567788754433
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=40.20 E-value=1.3e+02 Score=37.08 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECC
Q 000781 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1288)
Q Consensus 639 g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~ 707 (1288)
..+++.+|.-|-||+||--..+....+++-...|..|..+.+|.++++.|.. .+-+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~---------yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN---------YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc---------eEEEEecc
Confidence 4589999999999999976666666677777789999999999999987754 66666654
No 397
>PHA02713 hypothetical protein; Provisional
Probab=37.94 E-value=2.3e+02 Score=36.17 Aligned_cols=73 Identities=7% Similarity=0.013 Sum_probs=41.0
Q ss_pred CCEEEEEECC------CcEEEEECCC-ce--eEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCC
Q 000781 639 SDCFLSVGED------FSVALASLET-LR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1288)
Q Consensus 639 g~~l~Sgs~D------gsV~lWdl~t-~~--~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg 709 (1288)
+...+.|+.+ .++..||.++ .+ .+..++........+.+ ++...++|+.| + ..++-.+|..|.
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~--~----~~~~e~yd~~~~ 535 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE--S----YMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec--c----eeehhhcCcccc
Confidence 4566666654 2467899887 43 33344433333333444 46667777665 1 137888888876
Q ss_pred cEEEEEeCCC
Q 000781 710 ARERVLRGTA 719 (1288)
Q Consensus 710 ~l~~~l~GH~ 719 (1288)
+=...-..|.
T Consensus 536 ~W~~~~~~~~ 545 (557)
T PHA02713 536 EWNHICHQHS 545 (557)
T ss_pred cccchhhhcC
Confidence 6444434444
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.30 E-value=4.8e+02 Score=34.47 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=45.7
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECC----------Ccee---EEEe--------cCCCCCcEEEEEcCC-
Q 000781 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE----------TLRV---ERMF--------PGHPNYPAKVVWDCP- 680 (1288)
Q Consensus 623 ~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~----------t~~~---l~~l--------~gH~~~V~~V~~sp~- 680 (1288)
.|..|.++|+ |..++-.|..+ |.|-.+. .++. .+++ ..+...|..+.|+|.
T Consensus 86 ~v~~i~~n~~------g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPT------GSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCC------CCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 5888999998 78777777755 4444332 1111 1111 123446889999996
Q ss_pred --CCEEEEEecCCCcccCCCCeEEEEECCC
Q 000781 681 --RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1288)
Q Consensus 681 --~~~L~tg~~D~sgssD~DgtV~VWDl~t 708 (1288)
+.+|++-. + |+++|+||+..
T Consensus 159 ~~~~~l~vLt------s--dn~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVLT------S--DNTLRLYDISD 180 (717)
T ss_pred CCCCeEEEEe------c--CCEEEEEecCC
Confidence 46777643 3 48999999965
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=37.28 E-value=4.1e+02 Score=31.24 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=65.8
Q ss_pred CCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEE-ECCCcEEEEECCC--c----e-eEEEecCCCCCcEEEEEcCCC
Q 000781 610 SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSVALASLET--L----R-VERMFPGHPNYPAKVVWDCPR 681 (1288)
Q Consensus 610 tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sg-s~DgsV~lWdl~t--~----~-~l~~l~gH~~~V~~V~~sp~~ 681 (1288)
.+..++.+..|-..-+.++|+|+ ++.+.-+ +..+.|.-|++.. + + ....+..+.+.+-.++...+|
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpD------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPD------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred CCCEEEeecCcEEecCceEECCC------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 34445555555556688999999 6655555 4457888887752 1 1 122233345666788888888
Q ss_pred CEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCceEEeee
Q 000781 682 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1288)
Q Consensus 682 ~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~vi~~~~ 727 (1288)
.+-+++. .+ -+.|.+|+.+ |+++..+.-....+.++.|
T Consensus 225 ~lw~~a~------~~-g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 225 NLWVAAV------WG-GGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CEEEecc------cC-CceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 8775322 11 1389999998 9999998877555544433
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=37.11 E-value=7.5e+02 Score=29.05 Aligned_cols=104 Identities=11% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC
Q 000781 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1288)
Q Consensus 569 H~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D 648 (1288)
-.+.+..+.. ++|| ++++.++.-....-||--...-...-..-...|..+.|.|+ +...+ ....
T Consensus 143 ~~gs~~~~~r-----~~dG----~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~------~~lw~-~~~G 206 (302)
T PF14870_consen 143 TSGSINDITR-----SSDG----RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD------GNLWM-LARG 206 (302)
T ss_dssp ----EEEEEE------TTS-----EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT------S-EEE-EETT
T ss_pred CcceeEeEEE-----CCCC----cEEEEECcccEEEEecCCCccceEEccCccceehhceecCC------CCEEE-EeCC
Confidence 3466777765 5788 77777766666678886433222222234578999999998 56555 4488
Q ss_pred CcEEEEE-CCCceeEEE--ec--CCCCCcEEEEEcCCCCEEEEEe
Q 000781 649 FSVALAS-LETLRVERM--FP--GHPNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 649 gsV~lWd-l~t~~~l~~--l~--gH~~~V~~V~~sp~~~~L~tg~ 688 (1288)
+.|+.=+ ....+.... .+ .-...+..++|++++...++|+
T Consensus 207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 8888887 222222211 11 1112368999999988887543
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=35.68 E-value=77 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=25.5
Q ss_pred eEEEEEEeCCC---CeEEEEeCCCCEEEEEccC
Q 000781 18 RVTATSALTQP---PTLYTGGSDGSILWWSFSD 47 (1288)
Q Consensus 18 ~VTala~spdg---~~LaTGs~DG~I~lWdl~~ 47 (1288)
.|.++.|||++ ++|+..-.-|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999854 5888887889999999984
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=34.03 E-value=2.9e+02 Score=33.53 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=70.6
Q ss_pred ccCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCc--EEEEeCCCCceEEEEeccC-cCEEEEEECCC
Q 000781 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHV-APVRQIILSPP 632 (1288)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~t--I~vWDl~tg~~l~~~~~H~-~~V~~l~~sp~ 632 (1288)
|..+|..+..|..+.+.-..+-|...--++|| +++|+.+..|+. +.+-|+.+++..+ +..+. .......++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG---~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDG---RKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS----EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCC---CEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecC
Confidence 45677667777655444444444221114667 456776766775 5555788887544 33322 21223455677
Q ss_pred CCCCCCCCEEEEEECCCcEEEEECCCceeEEEecCCCCCcEEEEE--cCCCCEEEEEecCCCcccC--------------
Q 000781 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW--DCPRGYIACLCRDHSRTSD-------------- 696 (1288)
Q Consensus 633 ~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~--sp~~~~L~tg~~D~sgssD-------------- 696 (1288)
++.++-....+.|+-.|+++++....+.-....+-...| +.++.. ++|..- .-.|
T Consensus 92 ------~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~--~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 92 ------DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEI--SREDWKPLTKWKGFREFY 162 (386)
T ss_dssp ------SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEE--EGGG-----SHHHHHHHH
T ss_pred ------CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEE--eehhccCccccHHHHHHH
Confidence 677777777789999999998776555555556655666 344554 444432 1111
Q ss_pred ---CCCeEEEEECCCCcEEEEEe
Q 000781 697 ---AVDVLFIWDVKTGARERVLR 716 (1288)
Q Consensus 697 ---~DgtV~VWDl~tg~l~~~l~ 716 (1288)
-.+.|.--|++||+....+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEe
Confidence 12356667889988765554
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.61 E-value=6.4e+02 Score=29.39 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=70.0
Q ss_pred EEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEEC------------------CCcEEEEeCCCCceEE--EEe--cc
Q 000781 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM------------------DCSIRIWDLGSGNLIT--VMH--HH 620 (1288)
Q Consensus 563 ~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~------------------D~tI~vWDl~tg~~l~--~~~--~H 620 (1288)
+..+.+|.-.-..+.+ .+|| +.++.+.. .-++-+-|..+|+++. ++. .+
T Consensus 154 vgE~~t~GiGpHev~l-----m~DG----rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 154 VGEFSTHGIGPHEVTL-----MADG----RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred ecccccCCcCcceeEE-----ecCC----cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 3445556555556666 3577 65554432 1233444444555443 233 34
Q ss_pred CcCEEEEEECCCCCCCCCCCEEEEEEC-----CCcEEEEECCCceeEEEec-------CCCCCcEEEEEcCCCCEEEEEe
Q 000781 621 VAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLETLRVERMFP-------GHPNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 621 ~~~V~~l~~sp~~~~~~~g~~l~Sgs~-----DgsV~lWdl~t~~~l~~l~-------gH~~~V~~V~~sp~~~~L~tg~ 688 (1288)
.-.|+.++.-++ |..++.+-. |.--.+=-.+.++.+.-+. +-.++|-+|+.+.+..+++..+
T Consensus 225 ~lSiRHld~g~d------gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS 298 (366)
T COG3490 225 QLSIRHLDIGRD------GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS 298 (366)
T ss_pred hcceeeeeeCCC------CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence 556777877777 443333321 2222222223344443332 1224678899988777777432
Q ss_pred cCCCcccCCCCeEEEEECCCCcEEEE
Q 000781 689 RDHSRTSDAVDVLFIWDVKTGARERV 714 (1288)
Q Consensus 689 ~D~sgssD~DgtV~VWDl~tg~l~~~ 714 (1288)
-.-+..-+||..||..+..
T Consensus 299 -------P~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 299 -------PRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred -------CCCCeEEEEEcCCCcEEec
Confidence 2346888999999997654
No 404
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=33.53 E-value=92 Score=37.06 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=41.9
Q ss_pred CCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEE
Q 000781 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1288)
Q Consensus 648 DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~ 713 (1288)
.+...++|+++++....... ...+....|+|+|++++... ++.|++++..+++..+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~---------~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR---------DNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE---------TTEEEEESSTTSEEEE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe---------cCceEEEECCCCCeEE
Confidence 46788999999877654444 45788999999999999643 3799999998885544
No 405
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=32.30 E-value=2e+02 Score=34.81 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=54.1
Q ss_pred EEEEEECCCCCCCCCCCEEE-EEECCC----cEEEEECCCceeEEE-ecCCCCCcEEEEEcCCCCEEEEEecCCCcc---
Q 000781 624 VRQIILSPPQTEHPWSDCFL-SVGEDF----SVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRT--- 694 (1288)
Q Consensus 624 V~~l~~sp~~~~~~~g~~l~-Sgs~Dg----sV~lWdl~t~~~l~~-l~gH~~~V~~V~~sp~~~~L~tg~~D~sgs--- 694 (1288)
+....++|+ +++++ +.+..| ++++.|+++++.+.. +..- .-..+.|.+++..|+....+....
T Consensus 126 ~~~~~~Spd------g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPD------GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTT------SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCC------CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCccccccc
Confidence 446778998 67655 434444 599999999987643 2321 123499999988887666551100
Q ss_pred cCCCCeEEEEECCCCcEE--EEEeCCCC
Q 000781 695 SDAVDVLFIWDVKTGARE--RVLRGTAS 720 (1288)
Q Consensus 695 sD~DgtV~VWDl~tg~l~--~~l~GH~~ 720 (1288)
+.....|+.|++.++... ..+.+...
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~ 225 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDE 225 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTC
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCC
Confidence 111467999999886543 44444443
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.93 E-value=2.6e+02 Score=31.14 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.7
Q ss_pred cEEEEEECCCcEEEEeCCCCceE
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLI 614 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l 614 (1288)
++|+.-..+|.+++||+.+++++
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeec
Confidence 78999999999999999998764
No 407
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=4.9e+02 Score=32.58 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=47.2
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCcEEEEE---------CCCceeEEE---e-------cCC-CCCcEEEEEcCCC-
Q 000781 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS---------LETLRVERM---F-------PGH-PNYPAKVVWDCPR- 681 (1288)
Q Consensus 623 ~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWd---------l~t~~~l~~---l-------~gH-~~~V~~V~~sp~~- 681 (1288)
.|..+..++. |..++-.+.||.+.++= +++|+.+-. + ... .-.+..++|+|+.
T Consensus 105 eV~~vl~s~~------GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 105 EVYQVLLSPT------GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEecCC------CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence 4677888888 78888888888776653 234433211 1 111 1135688999975
Q ss_pred --CEEEEEecCCCcccCCCCeEEEEECCCCcEE
Q 000781 682 --GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1288)
Q Consensus 682 --~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~ 712 (1288)
..|..- ++ |++|||||+..-+.+
T Consensus 179 ~D~hL~iL------~s--dnviRiy~lS~~tel 203 (741)
T KOG4460|consen 179 LDPHLVLL------TS--DNVIRIYSLSEPTEL 203 (741)
T ss_pred CCceEEEE------ec--CcEEEEEecCCcchh
Confidence 444432 23 489999998764443
No 408
>PRK10115 protease 2; Provisional
Probab=31.15 E-value=1.3e+03 Score=30.19 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=61.1
Q ss_pred CCCCCccCcEEEEE-E----CCCcEEEEeCCCCceEEEEeccCcCEEEEEECCCCCCCCCCCEEEEEEC-C-----CcEE
Q 000781 584 TAKGWSFNEVLVSG-S----MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D-----FSVA 652 (1288)
Q Consensus 584 SpdG~~~~~~L~SG-s----~D~tI~vWDl~tg~~l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~-D-----gsV~ 652 (1288)
|||| ++|+-+ + +...|++-|+.+|+.+..--.... ..+.|.++ ++.|+-... + ..|.
T Consensus 135 Spdg----~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D------~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 135 TPDN----TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAND------SWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred CCCC----CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeC------CCEEEEEEecCCCCCCCEEE
Confidence 5788 655443 2 233688999988874322211222 45899988 554444332 2 4677
Q ss_pred EEECCCc--eeEEEecCCCCCcE-EEEEcCCCCEEEEEecCCCcccCCCCeEEEEEC
Q 000781 653 LASLETL--RVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1288)
Q Consensus 653 lWdl~t~--~~l~~l~gH~~~V~-~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl 706 (1288)
.+++.++ +-...+........ .+..+.++++++..+.+ ..++.+.+++.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~-----~~~~~~~l~~~ 254 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS-----ATTSEVLLLDA 254 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC-----CccccEEEEEC
Confidence 8888877 33444443322333 33334488888765533 22468999985
No 409
>PF00796 PSI_8: Photosystem I reaction centre subunit VIII; InterPro: IPR001302 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This entry represents subunit VIII (PsaI) of the photosystem I (PSI) reaction centre. PSI is located, along with photosystem II (PSII), in the thylakoid photosynthetic membranes of plants, green algae and cyanobacteria. The crystal structure of PSI from the thermophilic cyanobacterium Synechococcus elongatus (Thermosynechococcus elongatus) has 12 protein subunits and 127 cofactors comprising 96 chlorophylls, 2 phylloquinones, 3 4Fe4S clusters, 22 carotenoids, 4 lipids, and a putative calcium ion []. PsaI consists of a single transmembrane helix, and has a crucial role in aiding normal structural organisation of PsaL within the PSI complex and the absence of PsaI alters PsaL organisation, leading to a small, but physiologically significant, defect in PSI function []. PsaL encodes a subunit of PSI and is necessary for trimerisation of PSI. PsaL may constitute the trimer-forming domain in the structure of PSI []. ; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_I 2O01_I 3LW5_I 2WSE_I 2WSC_I 1JB0_I 3PCQ_I.
Probab=28.81 E-value=23 Score=25.50 Aligned_cols=14 Identities=50% Similarity=0.887 Sum_probs=12.2
Q ss_pred HHHHhhcchhhhhh
Q 000781 1219 TLVGILLPSLAMAD 1232 (1288)
Q Consensus 1219 ~~~~~~~~~~~~~~ 1232 (1288)
-|||.++|+.+||=
T Consensus 7 PlvGlvfPai~m~~ 20 (25)
T PF00796_consen 7 PLVGLVFPAIAMAL 20 (25)
T ss_dssp HHHHCHHHHHHHHH
T ss_pred ehHHHHhHHHHHHH
Confidence 47999999999984
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.25 E-value=1.7e+02 Score=39.65 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=71.4
Q ss_pred CcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCce-EEEEeccCcCEEEEEECCCCCCCCCCCEEEEEECC
Q 000781 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1288)
Q Consensus 570 ~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~-l~~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D 648 (1288)
...+.|+.|+|... ...+....|+.|++.-+..-.. ..+| --+..+++++|+|. |..++.|-..
T Consensus 155 ~vf~~~~~wnP~vp--------~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSpr------GKQl~iG~nn 219 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVP--------LNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPR------GKQLFIGRNN 219 (1405)
T ss_pred ccccccccccCCcc--------chhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccc------cceeeEecCC
Confidence 45677888987432 3467778899999887753322 2222 23567899999999 8899999999
Q ss_pred CcEEEEECCCceeEEEecCC----CCCcEEEEEcCCCCEEEEEe
Q 000781 649 FSVALASLETLRVERMFPGH----PNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 649 gsV~lWdl~t~~~l~~l~gH----~~~V~~V~~sp~~~~L~tg~ 688 (1288)
|++.-|-.. ++....+++- ..+|.+|.|-....++++-+
T Consensus 220 Gt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 220 GTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999988654 3333333222 25789999998888888643
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=27.83 E-value=1.2e+03 Score=28.66 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=44.6
Q ss_pred CcceeeEEEeCCCCC---CceEEEEEEeC------CCCeEEEEeCCCCEEEEEccCCCCCcceeeEEeeccccceEEeEe
Q 000781 1 MKCRSVACIWSGTPP---SHRVTATSALT------QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSI 71 (1288)
Q Consensus 1 ~~~~~~~~lw~~~~p---~h~VTala~sp------dg~~LaTGs~DG~I~lWdl~~~~~~~~~p~~~l~GH~~~Vt~L~~ 71 (1288)
|++=.+.=+|..+=+ .....|+++.+ +...|+.||.+|.++|++-... +.+...+.+-..-..||..+..
T Consensus 1 MSLFk~rewWst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~-~~~~~~lllE~~l~~PILqv~~ 79 (418)
T PF14727_consen 1 MSLFKTREWWSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGN-EFQPEDLLLETQLKDPILQVEC 79 (418)
T ss_pred CCcccchheeeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCC-CCCCccEEEEEecCCcEEEEEe
Confidence 555555567877632 23345555543 2369999999999999998631 1112223233345789999976
Q ss_pred ccc
Q 000781 72 CYP 74 (1288)
Q Consensus 72 ~s~ 74 (1288)
..+
T Consensus 80 G~F 82 (418)
T PF14727_consen 80 GKF 82 (418)
T ss_pred ccc
Confidence 544
No 412
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=27.76 E-value=9e+02 Score=27.09 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=83.0
Q ss_pred EEEEEcCCcEEEEEecccccCCCCCCccccCCc-eeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEE
Q 000781 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1288)
Q Consensus 528 lv~Gs~DG~I~i~~~d~~~~~~~~~~~~d~~t~-~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vW 606 (1288)
++++ ....|.++.|.... ... +..+.+.- ...+.++.|.+ +.++.|..+ ...+.
T Consensus 108 L~va-~kk~i~i~~~~~~~-----------~~f~~~~ke~~l-p~~~~~i~~~~-----------~~i~v~~~~-~f~~i 162 (275)
T PF00780_consen 108 LCVA-VKKKILIYEWNDPR-----------NSFSKLLKEISL-PDPPSSIAFLG-----------NKICVGTSK-GFYLI 162 (275)
T ss_pred EEEE-ECCEEEEEEEECCc-----------ccccceeEEEEc-CCCcEEEEEeC-----------CEEEEEeCC-ceEEE
Confidence 4444 44588888886321 111 23444432 47788898842 567777644 46788
Q ss_pred eCCCCceEEEEecc------------CcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEE--EecCCCCCc
Q 000781 607 DLGSGNLITVMHHH------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER--MFPGHPNYP 672 (1288)
Q Consensus 607 Dl~tg~~l~~~~~H------------~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~--~l~gH~~~V 672 (1288)
|+.++.....+... ..++..+... + +.++++ .|..-.+.|.. |+..+ .+. -...+
T Consensus 163 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~e~Ll~--~~~~g~fv~~~-G~~~r~~~i~-W~~~p 231 (275)
T PF00780_consen 163 DLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D------NEFLLC--YDNIGVFVNKN-GEPSRKSTIQ-WSSAP 231 (275)
T ss_pred ecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C------ceEEEE--ecceEEEEcCC-CCcCcccEEE-cCCch
Confidence 99877654433211 1234444433 2 344443 34444444543 43322 222 12355
Q ss_pred EEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCcEEEEEeCCCCc
Q 000781 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1288)
Q Consensus 673 ~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~l~~~l~GH~~~ 721 (1288)
..+++. ..||+.. .+ +.|-||++.+|++++++.+...+
T Consensus 232 ~~~~~~--~pyli~~-------~~--~~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 232 QSVAYS--SPYLIAF-------SS--NSIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred hEEEEE--CCEEEEE-------CC--CEEEEEECcCCcEEEEEECCCEE
Confidence 666664 4688742 22 57999999999999999977643
No 413
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=27.46 E-value=1.9e+02 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=21.8
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEEec
Q 000781 592 EVLVSGSMDCSIRIWDLGSGNLITVMHH 619 (1288)
Q Consensus 592 ~~L~SGs~D~tI~vWDl~tg~~l~~~~~ 619 (1288)
.++++.-.+++|.++|..+++.+..+..
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 3555566788999999999888877765
No 414
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=27.27 E-value=27 Score=26.47 Aligned_cols=17 Identities=41% Similarity=0.598 Sum_probs=13.7
Q ss_pred HHHHHHHhhcchhhhhh
Q 000781 1216 IRETLVGILLPSLAMAD 1232 (1288)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~ 1232 (1288)
|-=-|||.++|+.+||=
T Consensus 6 I~VPlVglvfPai~Ma~ 22 (31)
T TIGR03052 6 IFVPLVGLVFPAVFMAL 22 (31)
T ss_pred eehhHHHHHHHHHHHHH
Confidence 33458999999999984
No 415
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.78 E-value=68 Score=23.83 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHH
Q 000781 1006 LQLLVSFWQDESEHVRMAARSLF 1028 (1288)
Q Consensus 1006 l~~la~~wqd~~~~vr~AAr~l~ 1028 (1288)
+..|.+.-+|+..+||+||=.-|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l 24 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECL 24 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 45566777899999999875444
No 416
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=25.17 E-value=7.9e+02 Score=31.53 Aligned_cols=180 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred ccCccccccccCCCCCCCcceecccCCCcEEEEEeeecCcccCCEEEEEEcC----CcEEEEEecccccCCCCCCccccC
Q 000781 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS----GEIEVIQFDLFERHNSPGASLKVN 558 (1288)
Q Consensus 483 ~~s~~~lWd~~~~~~~~~~~~~~~~h~~~Vts~~~is~~~~~p~~lv~Gs~D----G~I~i~~~d~~~~~~~~~~~~d~~ 558 (1288)
.+.....|....+.+ +.....+++++.+.-+ ++|+.| ..-.++.|| ....
T Consensus 306 yd~~~~~w~~~a~m~----------~~r~~~~~~~~~~~lY-----v~GG~~~~~~~l~~ve~YD-----------~~~~ 359 (571)
T KOG4441|consen 306 YDPKTNEWSSLAPMP----------SPRCRVGVAVLNGKLY-----VVGGYDSGSDRLSSVERYD-----------PRTN 359 (571)
T ss_pred ecCCcCcEeecCCCC----------cccccccEEEECCEEE-----EEccccCCCcccceEEEec-----------CCCC
Q ss_pred CceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCC-----cEEEEeCCCCc--eEEEEeccCcCEEEEEECC
Q 000781 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-----SIRIWDLGSGN--LITVMHHHVAPVRQIILSP 631 (1288)
Q Consensus 559 t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~-----tI~vWDl~tg~--~l~~~~~H~~~V~~l~~sp 631 (1288)
+......+............ +| .+.+.||.|+ +|-.||..+.+ .+..+.........+.+.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l-------~g----~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~- 427 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL-------DG----KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG- 427 (571)
T ss_pred ceeccCCccCccccceeEEE-------CC----EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC-
Q ss_pred CCCCCCCCCEEEEEE------CCCcEEEEECCCceeEEEecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEE
Q 000781 632 PQTEHPWSDCFLSVG------EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1288)
Q Consensus 632 ~~~~~~~g~~l~Sgs------~DgsV~lWdl~t~~~l~~l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWD 705 (1288)
|.+.+.|+ .=.+|..||..+.+....-+--......-.-.-++...++|+.| + .....+|..+|
T Consensus 428 -------g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~--~-~~~~~~VE~yd 497 (571)
T KOG4441|consen 428 -------GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD--G-TSALSSVERYD 497 (571)
T ss_pred -------CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc--C-CCccceEEEEc
Q ss_pred CCCCc
Q 000781 706 VKTGA 710 (1288)
Q Consensus 706 l~tg~ 710 (1288)
.++.+
T Consensus 498 p~~~~ 502 (571)
T KOG4441|consen 498 PETNQ 502 (571)
T ss_pred CCCCc
No 417
>PHA03098 kelch-like protein; Provisional
Probab=25.06 E-value=6.9e+02 Score=31.41 Aligned_cols=106 Identities=9% Similarity=0.019 Sum_probs=51.3
Q ss_pred cEEEEEECC------CcEEEEeCCCCceEEE--EeccCcCEEEEEECCCCCCCCCCCEEEEEECC--------CcEEEEE
Q 000781 592 EVLVSGSMD------CSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGED--------FSVALAS 655 (1288)
Q Consensus 592 ~~L~SGs~D------~tI~vWDl~tg~~l~~--~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D--------gsV~lWd 655 (1288)
++.+.||.+ ..+..||+.+.+-... +.........+.. + +..++.|+.+ ..+.+||
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--D------GKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--C------CEEEEECCccCCCCCcccceEEEec
Confidence 677777732 4578889876643211 1110011111211 2 4555666542 2388899
Q ss_pred CCCceeEEE--ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 656 LETLRVERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 656 l~t~~~l~~--l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
.++.+-... +.........+.+ ++..++.|+.+ ... ..+.|.++|.++.+
T Consensus 463 ~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~--~~~-~~~~v~~yd~~~~~ 514 (534)
T PHA03098 463 PVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK--YEY-YINEIEVYDDKTNT 514 (534)
T ss_pred CCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc--CCc-ccceeEEEeCCCCE
Confidence 887654322 1111111122333 56666666554 111 12578888887654
No 418
>PHA03098 kelch-like protein; Provisional
Probab=24.96 E-value=6.9e+02 Score=31.42 Aligned_cols=109 Identities=10% Similarity=0.039 Sum_probs=50.7
Q ss_pred cEEEEEECC-----CcEEEEeCCCCceEE--EEeccCcCEEEEEECCCCCCCCCCCEEEEEECC------CcEEEEECCC
Q 000781 592 EVLVSGSMD-----CSIRIWDLGSGNLIT--VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED------FSVALASLET 658 (1288)
Q Consensus 592 ~~L~SGs~D-----~tI~vWDl~tg~~l~--~~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~D------gsV~lWdl~t 658 (1288)
.+.+-||.+ .++..||..+.+-.. .+...... .+++.. + +..++.|+.+ ..+..||+.+
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~-~------~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV-N------NLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE-C------CEEEEECCcCCCCcccceEEEEeCCC
Confidence 677777765 357778877654321 11110001 111111 2 4566666632 4678899887
Q ss_pred ceeEEE--ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 659 LRVERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 659 ~~~l~~--l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
.+-... ++........+.. ++...+.|+.+.......-..+.+||.++++
T Consensus 416 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 416 NKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 654321 1111111112222 4555566554310000001348889988764
No 419
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=24.06 E-value=1.9e+02 Score=22.24 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=19.2
Q ss_pred CCceEEEEEEeCCCCeEEEE-eCC--CCEEEE
Q 000781 15 PSHRVTATSALTQPPTLYTG-GSD--GSILWW 43 (1288)
Q Consensus 15 p~h~VTala~spdg~~LaTG-s~D--G~I~lW 43 (1288)
....-.+.++||||++|+-. ..+ |.--||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34467889999999888754 445 655555
No 420
>PHA02790 Kelch-like protein; Provisional
Probab=23.98 E-value=8.1e+02 Score=30.54 Aligned_cols=103 Identities=9% Similarity=-0.051 Sum_probs=50.6
Q ss_pred cEEEEEECCC---cEEEEeCCCCceEEE--EeccCcCEEEEEECCCCCCCCCCCEEEEEECCCcEEEEECCCceeEEE--
Q 000781 592 EVLVSGSMDC---SIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-- 664 (1288)
Q Consensus 592 ~~L~SGs~D~---tI~vWDl~tg~~l~~--~~~H~~~V~~l~~sp~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~-- 664 (1288)
++.+.||.++ ++..||..+.+-... +.........+.+ + +...+.| |.+.+||.++.+-...
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~------~~IYv~G---G~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--G------RRLFLVG---RNAEFYCESSNTWTLIDD 432 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--C------CEEEEEC---CceEEecCCCCcEeEcCC
Confidence 7777777653 467888876543221 1111111111222 2 4555555 3577899887654322
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCcccCCCCeEEEEECCCCc
Q 000781 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1288)
Q Consensus 665 l~gH~~~V~~V~~sp~~~~L~tg~~D~sgssD~DgtV~VWDl~tg~ 710 (1288)
++........+.. ++...++|+.+ +... -.+|.+||.++++
T Consensus 433 m~~~r~~~~~~v~--~~~IYviGG~~--~~~~-~~~ve~Yd~~~~~ 473 (480)
T PHA02790 433 PIYPRDNPELIIV--DNKLLLIGGFY--RGSY-IDTIEVYNNRTYS 473 (480)
T ss_pred CCCCccccEEEEE--CCEEEEECCcC--CCcc-cceEEEEECCCCe
Confidence 2111112222333 45666666654 1111 1467888877654
No 421
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=22.54 E-value=37 Score=26.62 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=18.2
Q ss_pred hHHHHHHHhhcchhhhhhchhhhhhhhh
Q 000781 1215 SIRETLVGILLPSLAMADILGFLTVVES 1242 (1288)
Q Consensus 1215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 (1288)
+|-=-|||.++|+.+||= ++..||+
T Consensus 8 sI~VPlVGlvfPai~Ma~---lf~yIe~ 32 (36)
T CHL00186 8 SILVPLVGLVFPAIAMAS---LFLYIQK 32 (36)
T ss_pred hhHHhHHHHHHHHHHHHH---HHHHhhh
Confidence 455568999999999984 3345554
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=22.27 E-value=5.1e+02 Score=33.59 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=49.2
Q ss_pred cCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCC---------CCceEEE--EeccC-cCEEEEEECCCCCC
Q 000781 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITV--MHHHV-APVRQIILSPPQTE 635 (1288)
Q Consensus 568 gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~---------tg~~l~~--~~~H~-~~V~~l~~sp~~~~ 635 (1288)
...+.|.++.|.. +||| +.+++-|-...|.++--. +-..++. +..|+ .+|.+..|.++
T Consensus 70 ~~~~~I~dLDWts---t~d~----qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~--- 139 (631)
T PF12234_consen 70 SEDDPIRDLDWTS---TPDG----QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD--- 139 (631)
T ss_pred cCCCceeeceeee---cCCC----CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecC---
Confidence 4578999999965 6888 888888899999988532 1123333 34455 58889999887
Q ss_pred CCCCCEEEEEECCCcEEEEE
Q 000781 636 HPWSDCFLSVGEDFSVALAS 655 (1288)
Q Consensus 636 ~~~g~~l~Sgs~DgsV~lWd 655 (1288)
|..++.. ++.+.|+|
T Consensus 140 ---G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 140 ---GTLVVGS--GNQLFVFD 154 (631)
T ss_pred ---CeEEEEe--CCEEEEEC
Confidence 5544433 34566665
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=21.84 E-value=4.4e+02 Score=34.54 Aligned_cols=137 Identities=6% Similarity=-0.076 Sum_probs=0.0
Q ss_pred cCCCcEEEEEeeecCcccCCEEEEEEcCCcEEEEEecccccCCCCC-----CccccCCceeEEEEecCCcCEEEEEEeec
Q 000781 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG-----ASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1288)
Q Consensus 507 ~h~~~Vts~~~is~~~~~p~~lv~Gs~DG~I~i~~~d~~~~~~~~~-----~~~d~~t~~~~~~l~gH~~~V~~L~~~p~ 581 (1288)
+|.-.---+........ |+.+..||.|.+|.-.......... .......-++...++-.. .+++|++|
T Consensus 100 PHtIN~i~v~~lg~~EV----Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh-- 172 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEV----LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIH-- 172 (717)
T ss_pred CceeeEEEecccCCeeE----EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEE--
Q ss_pred ccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEe---ccCcCEEEEEECCCCCCCCCCC-EEEEEECCCcEEEEEC
Q 000781 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASL 656 (1288)
Q Consensus 582 ~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~---~H~~~V~~l~~sp~~~~~~~g~-~l~Sgs~DgsV~lWdl 656 (1288)
+.+. .++||.++.-..|.||-........... .|..-|-+|.|.++ ...+.|. .+++++-.|.+.+|++
T Consensus 173 --~~~~---~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~-~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 173 --DYKK---SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDD-DLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --ecCc---ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecC-CCCCccceEEEEEeccCcEEEEEE
No 424
>PHA02713 hypothetical protein; Provisional
Probab=21.43 E-value=9.2e+02 Score=30.78 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=15.2
Q ss_pred cEEEEEECCC-----cEEEEeCCCCc
Q 000781 592 EVLVSGSMDC-----SIRIWDLGSGN 612 (1288)
Q Consensus 592 ~~L~SGs~D~-----tI~vWDl~tg~ 612 (1288)
.+.+.||.++ ++..||..+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCe
Confidence 7777787664 47889987664
No 425
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=20.16 E-value=1.4e+03 Score=26.45 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=68.4
Q ss_pred cCCceeEEEEecCCcCEEEEEEeecccCCCCCccCcEEEEEECCCcEEEEeCCCCceEEEEeccC-----cCEEEEEECC
Q 000781 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-----APVRQIILSP 631 (1288)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~L~~~p~~~SpdG~~~~~~L~SGs~D~tI~vWDl~tg~~l~~~~~H~-----~~V~~l~~sp 631 (1288)
.++-+.+.++. ..+.=+.|+. || +.|+.......+.++|..+.+..+++.... ..++-+.+-
T Consensus 117 ~~tl~~~~~~~-y~~EGWGLt~-------dg----~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 117 PNTLKKIGTFP-YPGEGWGLTS-------DG----KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp TTTTEEEEEEE--SSS--EEEE-------CS----SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred cccceEEEEEe-cCCcceEEEc-------CC----CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 34444555553 3456667764 45 556666667789999998887777665432 245667765
Q ss_pred CCCCCCCCCEEEEEECCCcEEEEECCCceeEEEec------------CC---CCCcEEEEEcCCCCEEEEEe
Q 000781 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP------------GH---PNYPAKVVWDCPRGYIACLC 688 (1288)
Q Consensus 632 ~~~~~~~g~~l~Sgs~DgsV~lWdl~t~~~l~~l~------------gH---~~~V~~V~~sp~~~~L~tg~ 688 (1288)
+ |...|-.-....|...|..+|+++..+. .+ .+-.+.|+|+|..+.|.+.+
T Consensus 184 ~------G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 N------GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp T------TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred c------CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 3 5677777777888999999999887652 01 12357999999877766543
Done!