BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000782
(1287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 1093 LQHLKISNCPNLNFLPAGLLHKNTC--------LECLQISGCSLNSFPVICXXXXXXXXX 1144
L+ L I CP L LP L + L+ L++ + S P
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----------- 200
Query: 1145 XXXXXXXXXKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPA--GGLPPNLKS 1202
K L+I N L +L +++ L++L + C L ++P GG P LK
Sbjct: 201 -SIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKR 257
Query: 1203 LSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFPE--GGLPPNLKSLCII 1253
L + DC NL+TLP + +T L+ L + C++L P LP N CII
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN----CII 306
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 997 LECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASS-------SLRYLQI 1049
LE L + + L LP + SL L L I CP L LPE AS+ L LQ
Sbjct: 129 LETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 1050 QQCE--ALRSLPAGLTCNKNL---------------------SLEFFELDGCSSLISFP- 1085
+ E +RSLPA + +NL LE +L GC++L ++P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 1086 --DGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGC 1126
G P L+ L + +C NL LP +H+ T LE L + GC
Sbjct: 248 IFGGRAP--LKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGC 287
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRY 632
S L+ ++ + ELPD L L L+ +++LP SIA+L L+ L + +C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 633 LIQLP----------KHMGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRTL 672
L +LP +H G L NL+ L + ++ LP + L+NL++L
Sbjct: 163 LTELPEPLASTDASGEHQG-LVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSN-TSIKSLPESIAALYNLQTLILY 628
+ N L+ L + + + L I L L LDL T++++ P L+ LIL
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261
Query: 629 SCRYLIQLPKHMGDLFNLRFLDIRGC-NLQQLP 660
C L+ LP + L L LD+RGC NL +LP
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 1008 LHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKN 1067
+ LP + +L++L +LKI N P A P I L L ++ C ALR+ P
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGR 252
Query: 1068 LSLEFFELDGCSSLISFP-DGELPLTLQHLKISNCPNLNFLPA 1109
L+ L CS+L++ P D L+ L + C NL+ LP+
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 568 DLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSN-TSIKSLPESIAA-------- 618
D + F+ L L+L+ + LP I L LR L + + LPE +A+
Sbjct: 121 DTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 619 -LYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRTL 672
L NLQ+L L + LP + +L NL+ L IR L L P + L L L
Sbjct: 181 GLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 80/217 (36%), Gaps = 41/217 (18%)
Query: 825 SIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEI 884
+ + F LE L P+ + + L EL I CP+ + E+P L S
Sbjct: 122 TXQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELT-ELPEPLASTDASGE 178
Query: 885 LNCRELSWIPCLPQIQNLILEECG-QVILESIVDLTSLVKLRLYKILSLRCLASEFFHRL 943
L +Q+L LE G + + SI +L +L L++ L L H L
Sbjct: 179 HQG--------LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHH-L 228
Query: 944 TVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIG 1003
L +L L C L FG + L+RL + CS
Sbjct: 229 PKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCS---------------------- 264
Query: 1004 HCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDA 1040
NL LP +H L L L + C +L+ LP + A
Sbjct: 265 ---NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRY 632
+ L L L+ + ELP I +L +LR LDLS+ + SLP + + + L+ +
Sbjct: 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NM 304
Query: 633 LIQLPKHMGDLFNLRFLDIRGCNLQQ 658
+ LP G+L NL+FL + G L++
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTL 625
+KN S LRVL LSH + LP +G L+Y + + +LP L NLQ L
Sbjct: 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 578 VLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLP 637
L LS+ +I + I L L L+ S+ LP I L NL+ L L R L LP
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 638 KHMGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRTL 672
+G F L++ + LP G L NL+ L
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 572 NFSRLRVLSLSHYEIVELPDLIGDL---KHLRY-------LDLSNTSIKSLPESIAALYN 621
N + L+ LS Y I E D+ + K +Y LDLSN I ++ +I Y+
Sbjct: 189 NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFK-YD 247
Query: 622 LQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRTLPSF 675
T + + L +LP + +L NLR LD+ L LP +G L+ F
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 558 ICRITKKVTHDLLKNFSR-LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ES 615
+ R + K L K R + L L + +P + + KHL +DLSN I +L +S
Sbjct: 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 616 IAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLP 660
+ + L TLIL R P+ L +LR L + G ++ +P
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 49/162 (30%)
Query: 498 AQFAAGERCLRLEDNSQHKNHAKARHLSYIRQRRDAFMRFEAFRSHKY--LRTFLPLDGG 555
A F AG+R + ++++ K A +L + F+ RS + L T P
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNL----------LEFQGIRSEQLNRLSTRNP---- 612
Query: 556 FGICRITKKV--------------------THDLLKNF--------SRLRVLSLSHYEIV 587
C IT +V ++++L + L +L+L H +I
Sbjct: 613 ---CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 588 -ELPDLIGDLKHLRYLDLSNTSIKS-LPESIAALYNLQTLIL 627
+PD +GDL+ L LDLS+ + +P++++AL L + L
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 588 ELPDLIGDLKHLRYLDLSNTSIKS-LPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNL 646
E+P + + +L ++ LSN + +P+ I L NL L L + + +P +GD +L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 647 RFLDIR 652
+LD+
Sbjct: 541 IWLDLN 546
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 618 ALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCN 655
A YN++TL + +L +PK MG LF ++ D G N
Sbjct: 319 ADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTN 356
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 618 ALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCN 655
A YN++TL + +L +PK MG LF ++ D G N
Sbjct: 277 ADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTN 314
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 49/162 (30%)
Query: 498 AQFAAGERCLRLEDNSQHKNHAKARHLSYIRQRRDAFMRFEAFRSHKY--LRTFLPLDGG 555
A F AG+R + ++++ K A +L + F+ RS + L T P
Sbjct: 564 ANFIAGKRYVYIKNDGMKKECHGAGNL----------LEFQGIRSEQLNRLSTRNP---- 609
Query: 556 FGICRITKKV--------------------THDLLKNF--------SRLRVLSLSHYEIV 587
C IT +V ++++L + L +L+L H +I
Sbjct: 610 ---CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 588 -ELPDLIGDLKHLRYLDLSNTSIKS-LPESIAALYNLQTLIL 627
+PD +GDL+ L LDLS+ + +P++++AL L + L
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 588 ELPDLIGDLKHLRYLDLSNTSIKS-LPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNL 646
E+P + + +L ++ LSN + +P+ I L NL L L + + +P +GD +L
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 647 RFLDIR 652
+LD+
Sbjct: 538 IWLDLN 543
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + NL +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLILYS 629
++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++ S
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVS 108
Query: 630 CRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
L LP + L L+ L ++G L+ LPP +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + NL +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLILYS 629
++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++ S
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVS 108
Query: 630 CRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
L LP + L L+ L ++G L+ LPP +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + NL +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLILYS 629
++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++ S
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVS 108
Query: 630 CRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
L LP + L L+ L ++G L+ LPP +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 139
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + NL +LP + GL+NL TL
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLI 626
L ++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++
Sbjct: 52 LMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVL 106
Query: 627 LYSCRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
S L LP + L L+ L ++G L+ LPP +
Sbjct: 107 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + NL +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLILYS 629
++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++ S
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVLDVS 108
Query: 630 CRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
L LP + L L+ L ++G L+ LPP +
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 24/174 (13%)
Query: 522 RHLSYIRQRRDAFMRFE--AFRSHKYLRTFLPLDGGFGICRITKKVTHDLLKNFSRLRVL 579
RHL Y+ + + E AF+ L LD F + K H +N LRVL
Sbjct: 375 RHLQYLNLSYNEPLGLEDQAFKECPQLEL---LDVAFTHLHV--KAPHSPFQNLHLLRVL 429
Query: 580 SLSHYEI-VELPDLIGDLKHLRYLDLSNTSIK----SLPESIAALYNLQTLILYSCRYLI 634
+LSH + L+ L+ LR+L+L S + S + + +L+ LIL SC L
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 635 QLPKHMGDLFNLRFLDIR-----GCNLQQLPPHMGGL------KNLRTLPSFLV 677
+ L N+ LD+ G ++ L H+ GL N+R +P L+
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDAL-SHLKGLYLNMASNNIRIIPPHLL 542
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 596 LKHLRYLDLSNTSIKSLPESI-AALYNLQTLILYSCRYLIQ-LPKHMGDLFNLRFLDIRG 653
L++L YLD+S+T + I L +L+ L + + LP +L NL FLD+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 654 CNLQQLPP 661
C L+QL P
Sbjct: 480 CQLEQLSP 487
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 596 LKHLRYLDLSNTSIKSLPESI-AALYNLQTLILYSCRYLIQ-LPKHMGDLFNLRFLDIRG 653
L++L YLD+S+T + I L +L+ L + + LP +L NL FLD+
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 654 CNLQQLPP 661
C L+QL P
Sbjct: 504 CQLEQLSP 511
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 575 RLRVLSLSHYEIVELPD--LIGDLKHLRYLDLSNTSIKSLPESI-AALYNLQTLILYSCR 631
+L L H + ++ + + L++L YLD+S+T + I L +L+ L +
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 632 YLIQ-LPKHMGDLFNLRFLDIRGCNLQQLPP 661
+ LP +L NL FLD+ C L+QL P
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 596 LKHLRYLDLSNTSIKSLPESI-AALYNLQTLILYSCRYLIQ-LPKHMGDLFNLRFLDIRG 653
L++L YLD+S+T + I L +L+ L + + LP +L NL FLD+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 654 CNLQQLPP 661
C L+QL P
Sbjct: 480 CQLEQLSP 487
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 548 TFLPLDG-GFGICRITKKVTHDLLKN----FSRLRVLSLSHYEIVELPD-LIGDLKHLRY 601
TF L+ G C ++K LLK+ F+ L L+L+ EI ++ D L HL+
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKE 327
Query: 602 LDLSNTSIKSLPESI-AALYNLQTLILYSCRYLIQLPK 638
L L +KS+P+ I L +LQ + L++ + P+
Sbjct: 328 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + +L +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLI 626
L ++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++
Sbjct: 51 LMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVL 105
Query: 627 LYSCRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
S L LP + L L+ L ++G L+ LPP +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLI 626
L ++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++
Sbjct: 51 LMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVL 105
Query: 627 LYSCRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
S L LP + L L+ L ++G L+ LPP +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + L +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLI 626
L ++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++
Sbjct: 51 LMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVL 105
Query: 627 LYSCRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
S L LP + L L+ L ++G L+ LPP +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + L +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLI 626
L ++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++
Sbjct: 51 LMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVL 105
Query: 627 LYSCRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
S L LP + L L+ L ++G L+ LPP +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + L +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP---ESIAALYNLQTLI 626
L ++RL L+L E+ +L + G L L LDLS+ ++SLP +++ AL T++
Sbjct: 51 LMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL----TVL 105
Query: 627 LYSCRYLIQLP-KHMGDLFNLRFLDIRGCNLQQLPPHM 663
S L LP + L L+ L ++G L+ LPP +
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 576 LRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLI 634
L L LSH ++ LP L L L LD+S + SLP ++ L LQ L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 635 QLPKHMGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672
P + L L + L +LP + GL+NL TL
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTL 625
++ +RVL L+H ++ L L L + +LDLS+ +++LP ++AAL L+ L
Sbjct: 440 YADVRVLHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTL 625
++ +RVL L+H ++ L L L + +LDLS+ +++LP ++AAL L+ L
Sbjct: 440 YADVRVLHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 599 LRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQ 658
L+ LDL+ T + LP + L L+ L+L + ++ + +L L I+G N ++
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG-NTKR 338
Query: 659 LPPHMGGLKNLRTLPSFLVSKD 680
L G L+NL L +S D
Sbjct: 339 LELGTGCLENLENLRELDLSHD 360
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 1162 MDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLVTLPNQMQSM 1221
+D I++P N + L+ NC L + + L S C NL + ++
Sbjct: 242 LDEIAIPK---NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVXDNSAI 298
Query: 1222 TSLQDLTISNCIHLESFPEGGLPPNLKSLCIIECINLEAPS 1262
+L+ +C+ L S LP LK++ + N +A S
Sbjct: 299 ETLEPRVFXDCVKLSSVT---LPTALKTIQVYAFKNCKALS 336
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 573 FSRLRVLSLSHYEIVELPDLIGD-LKHLRYLDLSNTSIKSLPESI-AALYNLQTLILYSC 630
+ L+ L L ++ LPD + D L +L YL+L++ ++SLP+ + L NL L L S
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SY 166
Query: 631 RYLIQLPKHMGD-LFNLRFLDIRGCNLQQLP 660
L LP+ + D L L+ L + L+ +P
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 590 PDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLIL 627
P+ +L +L+YL +SNT IK LP+ + +++LQ ++L
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,820,821
Number of Sequences: 62578
Number of extensions: 1430492
Number of successful extensions: 3136
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 3031
Number of HSP's gapped (non-prelim): 158
length of query: 1287
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1177
effective length of database: 8,089,757
effective search space: 9521643989
effective search space used: 9521643989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)