Query 000782
Match_columns 1287
No_of_seqs 721 out of 5376
Neff 10.1
Searched_HMMs 46136
Date Mon Apr 1 23:29:30 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-84 3.4E-89 793.7 44.1 768 5-802 2-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.8E-62 2.1E-66 632.3 60.0 470 166-672 184-686 (1153)
3 PLN00113 leucine-rich repeat r 100.0 3E-43 6.5E-48 462.8 27.7 530 544-1256 69-605 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.5E-41 3.2E-46 446.8 26.8 531 573-1282 68-606 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 3.9E-42 8.4E-47 385.5 15.2 277 171-454 1-284 (287)
6 KOG0472 Leucine-rich repeat pr 100.0 2.3E-32 5E-37 283.6 -18.1 477 574-1284 45-542 (565)
7 KOG4194 Membrane glycoprotein 99.9 5.1E-29 1.1E-33 270.4 2.2 363 832-1253 80-447 (873)
8 KOG0618 Serine/threonine phosp 99.9 8.9E-30 1.9E-34 292.1 -7.7 267 944-1234 219-488 (1081)
9 KOG4194 Membrane glycoprotein 99.9 7.9E-28 1.7E-32 261.2 6.9 252 754-1034 201-454 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 1.7E-30 3.8E-35 269.8 -17.0 106 566-672 60-165 (565)
11 KOG0618 Serine/threonine phosp 99.9 6E-29 1.3E-33 285.3 -6.4 469 568-1232 39-510 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 1.4E-25 3E-30 244.9 -6.2 365 573-1055 6-375 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 2.3E-24 4.9E-29 235.5 -6.9 355 760-1236 19-376 (1255)
14 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 248.0 25.1 347 913-1283 552-906 (1153)
15 KOG4237 Extracellular matrix p 99.7 8.5E-20 1.8E-24 190.8 -6.0 275 563-894 80-360 (498)
16 KOG4237 Extracellular matrix p 99.7 9.1E-19 2E-23 183.2 -2.6 416 776-1232 68-498 (498)
17 PRK15387 E3 ubiquitin-protein 99.7 7.8E-16 1.7E-20 185.8 16.9 240 996-1287 223-462 (788)
18 PRK15387 E3 ubiquitin-protein 99.7 7.1E-16 1.5E-20 186.1 15.0 260 921-1239 203-462 (788)
19 PRK15370 E3 ubiquitin-protein 99.6 9E-15 1.9E-19 178.3 11.6 225 972-1239 180-404 (754)
20 PRK15370 E3 ubiquitin-protein 99.5 3.8E-14 8.3E-19 172.9 10.2 244 921-1234 180-427 (754)
21 PRK04841 transcriptional regul 99.5 3E-12 6.5E-17 168.5 23.9 290 167-502 15-332 (903)
22 KOG0617 Ras suppressor protein 99.4 4E-15 8.6E-20 137.6 -3.7 100 572-672 31-132 (264)
23 KOG0617 Ras suppressor protein 99.4 4.8E-15 1E-19 137.0 -5.0 168 592-879 28-195 (264)
24 PRK00411 cdc6 cell division co 99.3 2.1E-10 4.5E-15 134.8 24.6 301 164-481 28-358 (394)
25 cd00116 LRR_RI Leucine-rich re 99.3 1E-13 2.2E-18 158.7 -5.5 37 1198-1234 250-290 (319)
26 TIGR02928 orc1/cdc6 family rep 99.3 1.1E-09 2.3E-14 127.4 26.7 304 162-481 11-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.5E-09 3.3E-14 120.2 22.0 182 193-379 43-242 (269)
28 cd00116 LRR_RI Leucine-rich re 99.1 1.5E-12 3.3E-17 149.0 -5.2 257 996-1282 24-319 (319)
29 COG2909 MalT ATP-dependent tra 99.1 2.3E-09 4.9E-14 125.6 20.5 295 167-504 20-340 (894)
30 PF01637 Arch_ATPase: Archaeal 99.1 2.7E-10 5.9E-15 123.8 10.7 195 168-374 1-233 (234)
31 KOG4658 Apoptotic ATPase [Sign 99.1 5.2E-11 1.1E-15 148.0 4.5 240 572-873 543-788 (889)
32 COG3899 Predicted ATPase [Gene 99.1 2.3E-09 5.1E-14 134.2 17.2 310 167-501 1-385 (849)
33 TIGR00635 ruvB Holliday juncti 99.0 3.9E-09 8.5E-14 119.1 16.6 276 167-482 5-290 (305)
34 PRK00080 ruvB Holliday junctio 99.0 2.2E-09 4.8E-14 121.5 13.9 276 167-482 26-311 (328)
35 PTZ00112 origin recognition co 99.0 2.6E-08 5.7E-13 117.5 19.9 304 162-481 751-1086(1164)
36 PF05729 NACHT: NACHT domain 98.9 1.2E-08 2.6E-13 103.9 11.1 143 194-342 1-163 (166)
37 KOG3207 Beta-tubulin folding c 98.8 7E-10 1.5E-14 119.2 -1.2 94 1090-1212 245-340 (505)
38 KOG3207 Beta-tubulin folding c 98.7 1.6E-09 3.5E-14 116.6 -0.1 88 968-1055 170-259 (505)
39 PF14580 LRR_9: Leucine-rich r 98.7 7.5E-09 1.6E-13 102.6 4.6 108 572-680 40-153 (175)
40 PRK06893 DNA replication initi 98.7 1.5E-07 3.2E-12 100.2 14.8 156 193-379 39-207 (229)
41 COG2256 MGS1 ATPase related to 98.7 1.4E-07 3E-12 101.6 14.4 155 191-371 46-208 (436)
42 PRK13342 recombination factor 98.7 6E-07 1.3E-11 104.9 18.4 176 167-376 13-197 (413)
43 COG4886 Leucine-rich repeat (L 98.6 1.7E-08 3.7E-13 118.8 4.8 107 570-677 112-219 (394)
44 KOG0532 Leucine-rich repeat (L 98.6 1.4E-09 3.1E-14 120.5 -4.1 98 573-672 74-171 (722)
45 KOG0532 Leucine-rich repeat (L 98.6 1.6E-09 3.4E-14 120.1 -5.1 103 570-674 94-196 (722)
46 COG3903 Predicted ATPase [Gene 98.6 8.2E-08 1.8E-12 104.4 7.8 293 192-504 13-316 (414)
47 KOG4341 F-box protein containi 98.6 1.2E-09 2.5E-14 116.9 -6.4 110 1150-1259 345-463 (483)
48 KOG1259 Nischarin, modulator o 98.6 6.4E-09 1.4E-13 105.8 -1.1 86 571-658 281-366 (490)
49 KOG1909 Ran GTPase-activating 98.6 7.5E-10 1.6E-14 115.9 -8.4 202 1013-1234 86-310 (382)
50 PRK15386 type III secretion pr 98.6 4E-07 8.6E-12 101.3 11.9 60 1196-1259 154-214 (426)
51 TIGR02903 spore_lon_C ATP-depe 98.5 1.1E-05 2.4E-10 98.2 25.1 202 167-378 155-398 (615)
52 PF13855 LRR_8: Leucine rich r 98.5 9.6E-08 2.1E-12 77.6 4.9 56 575-630 2-59 (61)
53 KOG4341 F-box protein containi 98.5 3.6E-09 7.8E-14 113.3 -4.7 272 777-1054 140-438 (483)
54 PF14580 LRR_9: Leucine-rich r 98.5 2.1E-08 4.6E-13 99.4 0.8 103 572-677 17-123 (175)
55 TIGR03420 DnaA_homol_Hda DnaA 98.5 8.2E-07 1.8E-11 95.4 13.2 171 171-378 22-204 (226)
56 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 77.2 4.7 60 597-656 1-61 (61)
57 PF13401 AAA_22: AAA domain; P 98.5 1.9E-07 4E-12 90.6 6.8 118 192-311 3-125 (131)
58 PRK14961 DNA polymerase III su 98.5 3.8E-06 8.3E-11 96.2 17.9 179 167-371 17-216 (363)
59 PRK05564 DNA polymerase III su 98.5 3.4E-06 7.3E-11 95.0 17.1 177 167-373 5-188 (313)
60 COG1474 CDC6 Cdc6-related prot 98.5 8.4E-06 1.8E-10 92.0 20.0 211 162-376 13-239 (366)
61 PF05496 RuvB_N: Holliday junc 98.5 9.7E-07 2.1E-11 89.1 11.0 181 166-379 24-225 (233)
62 PTZ00202 tuzin; Provisional 98.5 2.4E-05 5.3E-10 86.3 22.0 162 167-342 263-434 (550)
63 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.5E-12 111.7 4.6 95 577-672 96-191 (394)
64 PRK14949 DNA polymerase III su 98.5 3.9E-06 8.5E-11 101.7 17.4 183 167-375 17-221 (944)
65 PRK14960 DNA polymerase III su 98.4 4.5E-06 9.7E-11 98.1 16.8 176 167-372 16-216 (702)
66 PRK07003 DNA polymerase III su 98.4 1.1E-05 2.3E-10 96.0 20.0 181 167-377 17-223 (830)
67 PRK14963 DNA polymerase III su 98.4 8.8E-07 1.9E-11 104.4 10.3 199 167-378 15-221 (504)
68 PLN03150 hypothetical protein; 98.4 3.4E-07 7.4E-12 112.5 6.3 98 575-672 419-520 (623)
69 cd00009 AAA The AAA+ (ATPases 98.4 2E-06 4.3E-11 85.7 10.7 125 169-313 1-131 (151)
70 PRK06645 DNA polymerase III su 98.4 7.5E-06 1.6E-10 96.0 16.6 191 167-370 22-224 (507)
71 PF13191 AAA_16: AAA ATPase do 98.4 4.7E-07 1E-11 94.0 5.9 47 167-216 1-47 (185)
72 PRK12402 replication factor C 98.4 7.5E-06 1.6E-10 94.2 16.3 196 167-373 16-224 (337)
73 PRK08727 hypothetical protein; 98.3 1E-05 2.2E-10 86.4 15.5 149 193-372 41-201 (233)
74 PRK12323 DNA polymerase III su 98.3 8.5E-06 1.8E-10 95.5 16.0 177 167-373 17-223 (700)
75 PRK14957 DNA polymerase III su 98.3 1.1E-05 2.4E-10 95.1 17.2 185 167-378 17-224 (546)
76 PRK14956 DNA polymerase III su 98.3 4.3E-06 9.2E-11 95.7 13.1 192 167-370 19-217 (484)
77 PLN03025 replication factor C 98.3 6.9E-06 1.5E-10 92.7 14.3 179 167-370 14-195 (319)
78 PRK08084 DNA replication initi 98.3 1.4E-05 3.1E-10 85.4 15.9 156 193-379 45-213 (235)
79 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 96.8 -0.6 109 567-678 300-410 (490)
80 KOG2028 ATPase related to the 98.3 1.1E-05 2.4E-10 85.1 13.7 158 191-370 160-331 (554)
81 PF13173 AAA_14: AAA domain 98.3 2E-06 4.3E-11 82.4 7.7 120 193-334 2-127 (128)
82 PRK15386 type III secretion pr 98.3 2.6E-06 5.7E-11 94.9 9.6 133 1091-1255 52-187 (426)
83 PRK00440 rfc replication facto 98.3 2.1E-05 4.6E-10 89.7 17.1 178 167-371 18-199 (319)
84 PRK07994 DNA polymerase III su 98.3 1.5E-05 3.2E-10 95.6 15.9 193 167-375 17-221 (647)
85 PRK09112 DNA polymerase III su 98.3 1.9E-05 4.1E-10 88.9 15.9 194 167-375 24-240 (351)
86 cd01128 rho_factor Transcripti 98.2 1.2E-06 2.5E-11 93.2 5.8 89 192-281 15-112 (249)
87 KOG2120 SCF ubiquitin ligase, 98.2 1E-08 2.2E-13 104.6 -9.5 177 1020-1232 186-373 (419)
88 PRK07940 DNA polymerase III su 98.2 2.4E-05 5.3E-10 89.2 16.5 183 167-375 6-213 (394)
89 PRK14962 DNA polymerase III su 98.2 2.1E-05 4.6E-10 92.1 16.4 187 167-379 15-223 (472)
90 PRK04195 replication factor C 98.2 6.2E-05 1.3E-09 90.0 20.7 246 167-454 15-271 (482)
91 PRK07471 DNA polymerase III su 98.2 3.6E-05 7.8E-10 87.2 17.6 192 167-375 20-238 (365)
92 TIGR00678 holB DNA polymerase 98.2 3.4E-05 7.3E-10 79.9 15.8 91 271-371 95-187 (188)
93 PRK08691 DNA polymerase III su 98.2 1.9E-05 4.2E-10 93.9 15.5 176 167-372 17-217 (709)
94 PRK13341 recombination factor 98.2 1.2E-05 2.5E-10 98.8 14.1 171 167-370 29-212 (725)
95 PRK05896 DNA polymerase III su 98.2 2.5E-05 5.3E-10 92.2 16.0 195 167-377 17-223 (605)
96 PRK08903 DnaA regulatory inact 98.2 1.5E-05 3.3E-10 85.4 13.2 153 192-379 41-203 (227)
97 PRK14964 DNA polymerase III su 98.2 3.1E-05 6.8E-10 90.0 16.5 179 167-371 14-213 (491)
98 KOG1909 Ran GTPase-activating 98.2 5.5E-08 1.2E-12 102.2 -5.6 112 1092-1210 186-310 (382)
99 PLN03150 hypothetical protein; 98.2 2.2E-06 4.8E-11 105.4 7.2 109 1118-1237 420-530 (623)
100 PRK14951 DNA polymerase III su 98.2 3.7E-05 8.1E-10 92.1 17.1 193 167-372 17-222 (618)
101 TIGR02397 dnaX_nterm DNA polym 98.2 6E-05 1.3E-09 87.4 18.5 182 167-375 15-218 (355)
102 PRK14958 DNA polymerase III su 98.2 3.1E-05 6.6E-10 91.8 16.0 180 167-372 17-217 (509)
103 PRK09087 hypothetical protein; 98.1 2.4E-05 5.1E-10 82.7 12.5 143 193-377 44-197 (226)
104 PRK09376 rho transcription ter 98.1 5.4E-06 1.2E-10 91.3 7.5 99 177-281 158-265 (416)
105 PRK14955 DNA polymerase III su 98.1 3.5E-05 7.7E-10 89.4 14.5 200 167-376 17-230 (397)
106 KOG2120 SCF ubiquitin ligase, 98.1 4.3E-08 9.3E-13 100.1 -8.5 156 996-1185 211-373 (419)
107 KOG2227 Pre-initiation complex 98.1 8.1E-05 1.8E-09 82.2 15.6 212 166-379 150-376 (529)
108 PRK05642 DNA replication initi 98.1 6.5E-05 1.4E-09 80.2 14.5 156 193-379 45-212 (234)
109 PRK09111 DNA polymerase III su 98.1 8E-05 1.7E-09 89.6 16.8 195 167-374 25-232 (598)
110 KOG0531 Protein phosphatase 1, 98.1 7.2E-07 1.6E-11 104.9 -0.5 86 572-659 70-155 (414)
111 PRK14969 DNA polymerase III su 98.0 8.4E-05 1.8E-09 88.9 16.3 184 167-376 17-222 (527)
112 PF05621 TniB: Bacterial TniB 98.0 0.00011 2.5E-09 78.3 15.1 196 173-372 44-258 (302)
113 KOG0531 Protein phosphatase 1, 98.0 2.1E-06 4.6E-11 100.9 2.4 104 569-675 90-194 (414)
114 PRK14959 DNA polymerase III su 98.0 0.00015 3.4E-09 86.1 17.5 196 167-379 17-225 (624)
115 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 61.1 3.5 38 575-612 2-39 (44)
116 PRK14970 DNA polymerase III su 98.0 0.00014 3.1E-09 84.2 17.0 184 167-376 18-211 (367)
117 PRK07133 DNA polymerase III su 98.0 0.00015 3.4E-09 87.5 17.5 189 167-376 19-221 (725)
118 COG2255 RuvB Holliday junction 98.0 0.00023 5E-09 73.5 16.0 175 166-373 26-221 (332)
119 PRK14954 DNA polymerase III su 98.0 0.00013 2.7E-09 88.0 16.5 201 167-376 17-230 (620)
120 PRK07764 DNA polymerase III su 98.0 0.00013 2.7E-09 91.0 16.9 174 167-371 16-217 (824)
121 TIGR01242 26Sp45 26S proteasom 98.0 5.6E-05 1.2E-09 87.1 13.0 177 167-369 123-328 (364)
122 PRK14952 DNA polymerase III su 98.0 0.0002 4.3E-09 85.7 17.6 197 167-379 14-224 (584)
123 PRK14950 DNA polymerase III su 97.9 0.00024 5.1E-09 86.8 18.2 193 167-375 17-221 (585)
124 PRK14953 DNA polymerase III su 97.9 0.0003 6.4E-09 83.0 18.3 181 167-374 17-219 (486)
125 PF00308 Bac_DnaA: Bacterial d 97.9 6.5E-05 1.4E-09 79.1 11.6 163 192-376 33-209 (219)
126 PRK14087 dnaA chromosomal repl 97.9 0.00013 2.7E-09 85.6 15.0 170 193-378 141-322 (450)
127 KOG2982 Uncharacterized conser 97.9 3.5E-06 7.6E-11 86.5 1.5 81 575-656 46-133 (418)
128 PRK08451 DNA polymerase III su 97.9 0.00032 7E-09 82.5 17.8 178 167-374 15-217 (535)
129 TIGR03345 VI_ClpV1 type VI sec 97.9 0.0001 2.2E-09 93.2 14.1 178 167-368 188-389 (852)
130 PRK06305 DNA polymerase III su 97.9 0.00025 5.5E-09 83.1 16.2 183 167-376 18-224 (451)
131 KOG0989 Replication factor C, 97.9 8.3E-05 1.8E-09 77.6 10.5 189 166-375 36-231 (346)
132 TIGR00767 rho transcription te 97.9 4.5E-05 9.8E-10 84.8 9.2 90 192-282 167-265 (415)
133 PHA02544 44 clamp loader, smal 97.9 0.00012 2.7E-09 83.0 13.3 147 167-340 22-171 (316)
134 PRK14971 DNA polymerase III su 97.9 0.00039 8.5E-09 84.5 17.7 177 167-370 18-217 (614)
135 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.3E-10 58.1 3.8 37 597-633 1-37 (44)
136 PRK11331 5-methylcytosine-spec 97.8 0.0001 2.2E-09 83.6 10.9 107 167-285 176-285 (459)
137 TIGR02639 ClpA ATP-dependent C 97.8 0.00018 3.9E-09 90.5 14.1 155 167-342 183-358 (731)
138 PRK06647 DNA polymerase III su 97.8 0.00067 1.4E-08 81.4 18.0 190 167-372 17-217 (563)
139 PRK14948 DNA polymerase III su 97.8 0.00068 1.5E-08 82.4 18.0 193 167-373 17-220 (620)
140 KOG2982 Uncharacterized conser 97.7 9.2E-06 2E-10 83.5 1.3 159 970-1130 71-238 (418)
141 CHL00181 cbbX CbbX; Provisiona 97.7 0.0014 3E-08 72.1 18.1 135 193-343 59-210 (287)
142 PRK07399 DNA polymerase III su 97.7 0.001 2.2E-08 74.0 17.0 195 167-374 5-220 (314)
143 TIGR00362 DnaA chromosomal rep 97.7 0.00061 1.3E-08 80.0 16.1 159 193-373 136-308 (405)
144 TIGR02881 spore_V_K stage V sp 97.7 0.00052 1.1E-08 75.0 14.0 161 167-343 7-192 (261)
145 PRK06620 hypothetical protein; 97.7 0.0003 6.5E-09 73.6 11.6 137 194-374 45-188 (214)
146 PRK03992 proteasome-activating 97.7 0.00028 6.1E-09 81.5 12.4 176 167-368 132-336 (389)
147 PRK14965 DNA polymerase III su 97.7 0.00063 1.4E-08 82.5 15.9 194 167-377 17-223 (576)
148 KOG1859 Leucine-rich repeat pr 97.7 1.2E-06 2.6E-11 100.3 -6.9 62 598-661 165-226 (1096)
149 CHL00095 clpC Clp protease ATP 97.7 0.00024 5.3E-09 90.5 12.7 155 167-341 180-353 (821)
150 PRK05563 DNA polymerase III su 97.7 0.0013 2.8E-08 79.4 18.0 189 167-372 17-217 (559)
151 TIGR02880 cbbX_cfxQ probable R 97.7 0.00088 1.9E-08 73.7 15.3 133 194-342 59-208 (284)
152 COG3267 ExeA Type II secretory 97.6 0.0022 4.7E-08 66.0 16.0 183 191-378 49-248 (269)
153 PRK05707 DNA polymerase III su 97.6 0.0011 2.4E-08 74.1 15.4 96 272-375 106-203 (328)
154 KOG2543 Origin recognition com 97.6 0.0018 3.8E-08 70.1 15.8 166 166-341 6-192 (438)
155 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00057 1.2E-08 87.4 14.3 154 167-342 174-349 (852)
156 PRK12422 chromosomal replicati 97.6 0.0018 3.8E-08 75.8 17.2 154 193-368 141-306 (445)
157 PRK14088 dnaA chromosomal repl 97.5 0.0013 2.9E-08 77.1 15.5 160 193-373 130-303 (440)
158 PRK00149 dnaA chromosomal repl 97.5 0.00099 2.1E-08 79.2 14.1 160 192-373 147-320 (450)
159 KOG4579 Leucine-rich repeat (L 97.5 1.5E-05 3.2E-10 72.4 -1.4 92 570-662 49-141 (177)
160 PRK08769 DNA polymerase III su 97.5 0.0033 7.2E-08 69.6 16.3 96 271-376 112-209 (319)
161 PRK10865 protein disaggregatio 97.5 0.0012 2.6E-08 84.0 14.7 153 167-342 179-354 (857)
162 PRK11034 clpA ATP-dependent Cl 97.5 0.00061 1.3E-08 84.4 11.7 155 167-342 187-362 (758)
163 KOG4579 Leucine-rich repeat (L 97.5 7.4E-06 1.6E-10 74.3 -3.6 100 574-674 27-130 (177)
164 PF05673 DUF815: Protein of un 97.4 0.005 1.1E-07 63.8 16.0 104 167-297 28-132 (249)
165 PF14516 AAA_35: AAA-like doma 97.4 0.0038 8.2E-08 70.6 16.5 199 167-382 12-246 (331)
166 TIGR00602 rad24 checkpoint pro 97.4 0.001 2.2E-08 80.2 12.3 49 167-216 85-133 (637)
167 KOG1644 U2-associated snRNP A' 97.4 0.00022 4.7E-09 69.9 5.3 81 577-658 22-102 (233)
168 PRK08058 DNA polymerase III su 97.3 0.004 8.6E-08 70.3 15.2 162 167-340 6-180 (329)
169 KOG1859 Leucine-rich repeat pr 97.3 1.2E-05 2.7E-10 92.4 -5.0 86 568-657 181-267 (1096)
170 PRK14086 dnaA chromosomal repl 97.3 0.0048 1E-07 73.3 16.1 157 194-372 315-485 (617)
171 COG0593 DnaA ATPase involved i 97.3 0.0067 1.4E-07 68.5 16.2 136 192-344 112-259 (408)
172 TIGR00763 lon ATP-dependent pr 97.3 0.012 2.7E-07 74.7 20.7 166 165-342 319-505 (775)
173 PRK06871 DNA polymerase III su 97.3 0.01 2.2E-07 65.9 17.3 175 175-372 11-200 (325)
174 PTZ00361 26 proteosome regulat 97.3 0.0014 3E-08 75.7 11.1 157 167-343 184-368 (438)
175 PF13177 DNA_pol3_delta2: DNA 97.3 0.0026 5.7E-08 63.4 11.7 139 170-330 1-162 (162)
176 smart00382 AAA ATPases associa 97.3 0.00096 2.1E-08 65.7 8.6 88 194-285 3-91 (148)
177 PRK10536 hypothetical protein; 97.2 0.0042 9.1E-08 65.2 13.0 131 167-312 56-213 (262)
178 KOG3665 ZYG-1-like serine/thre 97.2 0.00023 5E-09 87.2 4.4 111 541-657 145-263 (699)
179 PRK06090 DNA polymerase III su 97.2 0.011 2.3E-07 65.5 16.6 175 175-375 12-201 (319)
180 KOG1644 U2-associated snRNP A' 97.2 0.00045 9.8E-09 67.7 5.1 103 574-678 42-151 (233)
181 PF00004 AAA: ATPase family as 97.2 0.0005 1.1E-08 66.5 5.3 21 196-216 1-21 (132)
182 PRK08116 hypothetical protein; 97.2 0.0013 2.8E-08 71.5 9.0 104 194-312 115-221 (268)
183 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0082 1.8E-07 65.5 15.2 55 173-240 9-63 (262)
184 PTZ00454 26S protease regulato 97.2 0.005 1.1E-07 70.8 13.9 156 167-342 146-329 (398)
185 PRK10787 DNA-binding ATP-depen 97.1 0.004 8.6E-08 78.1 13.9 166 165-342 321-506 (784)
186 PRK10865 protein disaggregatio 97.1 0.02 4.2E-07 73.2 19.8 138 166-311 568-720 (857)
187 PRK07993 DNA polymerase III su 97.1 0.014 3.1E-07 65.5 16.3 175 175-372 11-201 (334)
188 CHL00176 ftsH cell division pr 97.0 0.0071 1.5E-07 73.7 13.9 176 167-367 184-386 (638)
189 KOG0741 AAA+-type ATPase [Post 97.0 0.018 3.8E-07 64.9 15.3 150 190-365 535-704 (744)
190 COG1373 Predicted ATPase (AAA+ 97.0 0.0071 1.5E-07 69.9 13.0 137 170-338 21-163 (398)
191 PRK12608 transcription termina 97.0 0.0035 7.6E-08 69.6 9.9 101 174-281 119-229 (380)
192 PRK13531 regulatory ATPase Rav 97.0 0.0033 7.2E-08 72.2 10.0 41 167-215 21-61 (498)
193 PF04665 Pox_A32: Poxvirus A32 97.0 0.0011 2.3E-08 69.3 5.5 36 194-231 14-49 (241)
194 TIGR03689 pup_AAA proteasome A 97.0 0.0055 1.2E-07 71.9 11.9 164 167-342 183-378 (512)
195 COG0466 Lon ATP-dependent Lon 96.9 0.0022 4.7E-08 75.3 8.2 164 165-342 322-508 (782)
196 KOG0991 Replication factor C, 96.9 0.0067 1.5E-07 60.7 10.3 43 167-215 28-70 (333)
197 COG5238 RNA1 Ran GTPase-activa 96.9 8.3E-05 1.8E-09 75.7 -2.9 89 571-659 27-135 (388)
198 KOG3665 ZYG-1-like serine/thre 96.9 0.00036 7.9E-09 85.5 1.9 110 565-675 139-258 (699)
199 PRK06964 DNA polymerase III su 96.9 0.022 4.8E-07 63.7 15.4 93 271-375 131-225 (342)
200 KOG2004 Mitochondrial ATP-depe 96.9 0.0087 1.9E-07 70.0 12.3 105 163-281 408-514 (906)
201 KOG2739 Leucine-rich acidic nu 96.9 0.00049 1.1E-08 70.8 2.0 109 569-679 38-155 (260)
202 PRK08118 topology modulation p 96.9 0.0005 1.1E-08 69.0 2.0 34 195-228 3-37 (167)
203 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0013 2.7E-08 72.8 5.2 55 162-216 47-101 (361)
204 TIGR01241 FtsH_fam ATP-depende 96.8 0.016 3.4E-07 69.9 15.0 177 167-368 56-259 (495)
205 PRK04296 thymidine kinase; Pro 96.8 0.0023 5.1E-08 65.9 6.1 113 194-313 3-117 (190)
206 PRK08181 transposase; Validate 96.7 0.0042 9E-08 67.1 8.1 100 194-312 107-209 (269)
207 KOG1514 Origin recognition com 96.7 0.079 1.7E-06 62.5 18.5 208 165-379 395-625 (767)
208 COG1222 RPT1 ATP-dependent 26S 96.7 0.038 8.1E-07 59.8 14.7 189 167-381 152-373 (406)
209 PF01695 IstB_IS21: IstB-like 96.7 0.0016 3.4E-08 66.0 4.1 101 193-312 47-150 (178)
210 TIGR02639 ClpA ATP-dependent C 96.6 0.021 4.6E-07 72.1 14.7 119 167-298 455-579 (731)
211 PRK08939 primosomal protein Dn 96.6 0.0056 1.2E-07 67.8 8.3 122 170-311 135-260 (306)
212 COG5238 RNA1 Ran GTPase-activa 96.6 0.00015 3.3E-09 73.8 -3.6 142 913-1054 24-197 (388)
213 KOG2739 Leucine-rich acidic nu 96.6 0.00057 1.2E-08 70.3 0.4 108 1111-1231 38-152 (260)
214 PF10443 RNA12: RNA12 protein; 96.6 0.066 1.4E-06 60.3 16.3 199 171-385 1-288 (431)
215 PRK07261 topology modulation p 96.6 0.0044 9.5E-08 62.6 6.6 65 195-282 2-67 (171)
216 TIGR03346 chaperone_ClpB ATP-d 96.6 0.01 2.2E-07 76.2 11.4 136 167-311 566-717 (852)
217 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0065 1.4E-07 77.2 9.5 137 166-311 566-718 (852)
218 COG2812 DnaX DNA polymerase II 96.6 0.0088 1.9E-07 69.7 9.7 186 167-369 17-214 (515)
219 COG0470 HolB ATPase involved i 96.6 0.01 2.3E-07 67.8 10.4 146 167-332 2-171 (325)
220 TIGR02902 spore_lonB ATP-depen 96.6 0.013 2.8E-07 70.7 11.4 43 167-215 66-108 (531)
221 PF02562 PhoH: PhoH-like prote 96.5 0.0035 7.6E-08 64.1 5.6 130 171-312 5-156 (205)
222 PRK06526 transposase; Provisio 96.5 0.0037 7.9E-08 67.2 5.8 100 194-312 99-201 (254)
223 PRK09183 transposase/IS protei 96.5 0.006 1.3E-07 66.1 7.1 101 194-312 103-206 (259)
224 PRK09361 radB DNA repair and r 96.4 0.009 2E-07 63.9 8.4 47 191-240 21-67 (225)
225 PRK06921 hypothetical protein; 96.4 0.009 2E-07 64.9 8.0 37 193-231 117-154 (266)
226 PRK12377 putative replication 96.4 0.0071 1.5E-07 64.4 7.0 102 193-311 101-205 (248)
227 COG0542 clpA ATP-binding subun 96.4 0.01 2.2E-07 72.2 8.9 123 166-299 491-620 (786)
228 PHA00729 NTP-binding motif con 96.4 0.013 2.8E-07 60.6 8.5 24 192-215 16-39 (226)
229 PRK08699 DNA polymerase III su 96.4 0.027 5.8E-07 63.1 11.6 71 271-341 112-184 (325)
230 KOG2228 Origin recognition com 96.3 0.031 6.7E-07 59.7 11.1 171 167-342 25-219 (408)
231 COG0542 clpA ATP-binding subun 96.3 0.0089 1.9E-07 72.6 8.1 154 167-342 171-346 (786)
232 cd01393 recA_like RecA is a b 96.3 0.018 3.9E-07 61.7 9.9 88 191-281 17-123 (226)
233 PRK04132 replication factor C 96.3 0.068 1.5E-06 66.7 15.8 155 201-375 574-732 (846)
234 TIGR02237 recomb_radB DNA repa 96.3 0.0094 2E-07 62.9 7.5 49 191-242 10-58 (209)
235 PF00158 Sigma54_activat: Sigm 96.3 0.013 2.7E-07 58.7 7.7 45 168-216 1-45 (168)
236 KOG1947 Leucine rich repeat pr 96.3 0.00041 8.9E-09 84.6 -3.6 38 1018-1055 268-308 (482)
237 PRK05541 adenylylsulfate kinas 96.2 0.0082 1.8E-07 61.3 6.3 36 192-229 6-41 (176)
238 PF07693 KAP_NTPase: KAP famil 96.2 0.12 2.7E-06 58.9 16.7 42 172-216 2-43 (325)
239 PRK07952 DNA replication prote 96.2 0.021 4.5E-07 60.8 9.4 103 193-311 99-204 (244)
240 PF14532 Sigma54_activ_2: Sigm 96.2 0.0045 9.7E-08 60.2 4.1 108 169-312 1-110 (138)
241 CHL00095 clpC Clp protease ATP 96.2 0.022 4.7E-07 73.0 11.3 136 166-311 509-661 (821)
242 COG2607 Predicted ATPase (AAA+ 96.2 0.089 1.9E-06 53.6 13.0 119 167-312 61-183 (287)
243 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.017 3.6E-07 56.5 7.5 118 194-313 3-139 (159)
244 cd01394 radB RadB. The archaea 96.2 0.017 3.7E-07 61.4 8.5 44 191-236 17-60 (218)
245 COG2884 FtsE Predicted ATPase 96.1 0.038 8.3E-07 54.1 9.5 125 192-319 27-204 (223)
246 PF07728 AAA_5: AAA domain (dy 96.1 0.0033 7.1E-08 61.4 2.3 86 196-294 2-87 (139)
247 PRK11889 flhF flagellar biosyn 96.1 0.028 6E-07 62.8 9.6 89 192-282 240-330 (436)
248 cd01133 F1-ATPase_beta F1 ATP 96.1 0.025 5.5E-07 60.5 9.0 88 192-281 68-172 (274)
249 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.027 5.8E-07 60.8 9.5 57 191-248 17-77 (235)
250 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.5E-08 38.9 0.9 20 599-618 2-21 (22)
251 TIGR03499 FlhF flagellar biosy 96.0 0.02 4.3E-07 63.1 8.4 88 192-281 193-281 (282)
252 PF13207 AAA_17: AAA domain; P 96.0 0.0045 9.7E-08 58.7 2.9 21 195-215 1-21 (121)
253 TIGR01650 PD_CobS cobaltochela 96.0 0.089 1.9E-06 57.9 13.1 64 161-237 40-103 (327)
254 PRK06696 uridine kinase; Valid 96.0 0.014 2.9E-07 62.2 6.8 43 170-215 2-44 (223)
255 PRK06835 DNA replication prote 96.0 0.012 2.6E-07 65.7 6.6 102 194-311 184-288 (329)
256 COG1875 NYN ribonuclease and A 96.0 0.015 3.3E-07 62.7 6.7 135 167-312 225-388 (436)
257 COG1484 DnaC DNA replication p 95.9 0.012 2.7E-07 63.3 6.1 82 192-290 104-185 (254)
258 KOG0731 AAA+-type ATPase conta 95.9 0.14 3.1E-06 62.0 15.3 180 167-371 312-520 (774)
259 KOG0733 Nuclear AAA ATPase (VC 95.9 0.092 2E-06 60.6 12.8 190 167-381 191-412 (802)
260 PHA02244 ATPase-like protein 95.9 0.052 1.1E-06 60.3 10.7 45 163-215 93-141 (383)
261 TIGR01243 CDC48 AAA family ATP 95.9 0.045 9.8E-07 69.5 11.9 179 167-370 179-382 (733)
262 PF00448 SRP54: SRP54-type pro 95.9 0.018 3.9E-07 59.3 6.8 87 193-281 1-92 (196)
263 TIGR01243 CDC48 AAA family ATP 95.9 0.08 1.7E-06 67.3 14.0 178 167-369 454-657 (733)
264 PRK15455 PrkA family serine pr 95.8 0.0068 1.5E-07 70.5 3.7 49 167-215 77-125 (644)
265 TIGR02012 tigrfam_recA protein 95.8 0.023 5.1E-07 62.6 7.6 84 191-281 53-142 (321)
266 PRK11034 clpA ATP-dependent Cl 95.7 0.033 7.2E-07 69.4 9.6 120 167-297 459-582 (758)
267 KOG1969 DNA replication checkp 95.7 0.031 6.7E-07 65.8 8.4 83 190-292 323-407 (877)
268 COG1223 Predicted ATPase (AAA+ 95.7 0.19 4E-06 51.8 12.7 176 167-368 122-318 (368)
269 COG4608 AppF ABC-type oligopep 95.7 0.036 7.7E-07 58.3 8.0 125 192-319 38-177 (268)
270 PTZ00494 tuzin-like protein; P 95.7 1.3 2.9E-05 49.8 20.0 165 166-342 371-544 (664)
271 KOG0473 Leucine-rich repeat pr 95.7 0.0006 1.3E-08 68.0 -4.7 91 566-657 34-124 (326)
272 PRK13695 putative NTPase; Prov 95.7 0.011 2.3E-07 60.3 4.1 22 195-216 2-23 (174)
273 cd00983 recA RecA is a bacter 95.7 0.027 5.8E-07 62.2 7.4 84 191-281 53-142 (325)
274 CHL00195 ycf46 Ycf46; Provisio 95.6 0.072 1.6E-06 62.9 11.3 158 167-344 229-407 (489)
275 TIGR02238 recomb_DMC1 meiotic 95.6 0.038 8.2E-07 61.4 8.6 60 191-251 94-157 (313)
276 PRK05800 cobU adenosylcobinami 95.6 0.014 3.1E-07 58.5 4.7 80 195-281 3-85 (170)
277 cd03214 ABC_Iron-Siderophores_ 95.6 0.079 1.7E-06 54.2 10.2 122 192-316 24-162 (180)
278 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.067 1.5E-06 52.3 9.1 106 193-317 26-132 (144)
279 PRK09354 recA recombinase A; P 95.6 0.034 7.4E-07 61.9 7.8 84 191-281 58-147 (349)
280 cd01120 RecA-like_NTPases RecA 95.6 0.043 9.3E-07 55.2 8.2 40 195-236 1-40 (165)
281 KOG0730 AAA+-type ATPase [Post 95.5 0.39 8.5E-06 56.6 16.3 55 167-223 435-496 (693)
282 PRK05703 flhF flagellar biosyn 95.5 0.08 1.7E-06 61.7 11.2 87 193-281 221-308 (424)
283 PRK04301 radA DNA repair and r 95.5 0.064 1.4E-06 60.5 10.0 58 191-249 100-161 (317)
284 KOG2123 Uncharacterized conser 95.5 0.0007 1.5E-08 69.5 -5.1 78 575-654 20-98 (388)
285 PRK00771 signal recognition pa 95.5 0.092 2E-06 61.0 11.3 88 191-281 93-184 (437)
286 COG1419 FlhF Flagellar GTP-bin 95.5 0.039 8.5E-07 61.6 7.8 87 192-281 202-290 (407)
287 PRK07132 DNA polymerase III su 95.5 0.48 1E-05 52.2 16.2 158 192-375 17-185 (299)
288 cd03238 ABC_UvrA The excision 95.5 0.079 1.7E-06 53.5 9.4 123 192-326 20-161 (176)
289 PRK08233 hypothetical protein; 95.5 0.036 7.9E-07 57.0 7.3 24 193-216 3-26 (182)
290 cd03247 ABCC_cytochrome_bd The 95.5 0.08 1.7E-06 54.1 9.7 24 193-216 28-51 (178)
291 PRK12724 flagellar biosynthesi 95.4 0.033 7.2E-07 63.1 7.3 86 192-281 222-308 (432)
292 COG1618 Predicted nucleotide k 95.4 0.013 2.7E-07 55.7 3.3 24 193-216 5-28 (179)
293 PRK14722 flhF flagellar biosyn 95.4 0.043 9.3E-07 61.9 8.1 89 192-282 136-225 (374)
294 cd00544 CobU Adenosylcobinamid 95.4 0.06 1.3E-06 53.9 8.2 78 196-281 2-82 (169)
295 PRK12727 flagellar biosynthesi 95.4 0.057 1.2E-06 62.9 9.1 89 192-282 349-438 (559)
296 KOG0728 26S proteasome regulat 95.4 0.18 4E-06 51.2 11.4 191 167-379 147-367 (404)
297 PRK14974 cell division protein 95.4 0.078 1.7E-06 59.3 9.9 88 192-283 139-233 (336)
298 TIGR00959 ffh signal recogniti 95.4 0.071 1.5E-06 61.7 9.8 90 192-282 98-192 (428)
299 PF05659 RPW8: Arabidopsis bro 95.4 0.21 4.6E-06 48.2 11.5 84 3-86 2-86 (147)
300 KOG0744 AAA+-type ATPase [Post 95.3 0.039 8.4E-07 58.5 6.7 79 193-281 177-259 (423)
301 KOG2123 Uncharacterized conser 95.3 0.0016 3.6E-08 66.8 -3.1 87 542-637 17-105 (388)
302 PF13306 LRR_5: Leucine rich r 95.3 0.056 1.2E-06 51.8 7.5 92 565-661 26-119 (129)
303 TIGR02974 phageshock_pspF psp 95.3 0.071 1.5E-06 60.1 9.3 45 168-216 1-45 (329)
304 PF00006 ATP-synt_ab: ATP synt 95.3 0.05 1.1E-06 56.6 7.4 83 193-281 15-114 (215)
305 PRK06067 flagellar accessory p 95.2 0.06 1.3E-06 57.9 8.3 86 191-281 23-129 (234)
306 cd03228 ABCC_MRP_Like The MRP 95.2 0.079 1.7E-06 53.7 8.8 23 193-215 28-50 (171)
307 KOG2035 Replication factor C, 95.2 0.052 1.1E-06 56.3 7.2 187 167-375 14-229 (351)
308 PRK07667 uridine kinase; Provi 95.2 0.03 6.5E-07 57.9 5.7 37 175-215 3-39 (193)
309 PRK12726 flagellar biosynthesi 95.2 0.07 1.5E-06 59.5 8.7 91 191-283 204-296 (407)
310 COG0572 Udk Uridine kinase [Nu 95.2 0.036 7.9E-07 56.6 6.0 78 191-273 6-85 (218)
311 PF13604 AAA_30: AAA domain; P 95.2 0.039 8.5E-07 57.1 6.3 105 193-312 18-131 (196)
312 PF00560 LRR_1: Leucine Rich R 95.2 0.011 2.4E-07 36.1 1.3 19 646-664 2-20 (22)
313 PLN03186 DNA repair protein RA 95.1 0.099 2.1E-06 58.7 9.8 59 191-250 121-183 (342)
314 KOG0735 AAA+-type ATPase [Post 95.1 0.036 7.9E-07 64.9 6.4 72 192-281 430-503 (952)
315 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.095 2.1E-06 56.3 9.4 49 191-243 19-67 (237)
316 TIGR01817 nifA Nif-specific re 95.1 0.1 2.2E-06 63.8 10.8 47 166-216 196-242 (534)
317 COG0464 SpoVK ATPases of the A 95.1 0.23 5E-06 60.2 13.8 133 191-343 274-424 (494)
318 cd01131 PilT Pilus retraction 95.1 0.034 7.3E-07 57.8 5.7 110 194-315 2-112 (198)
319 PF08423 Rad51: Rad51; InterP 95.1 0.072 1.6E-06 57.6 8.3 57 192-249 37-97 (256)
320 PRK12723 flagellar biosynthesi 95.1 0.059 1.3E-06 61.4 7.9 90 192-283 173-265 (388)
321 cd03115 SRP The signal recogni 95.0 0.057 1.2E-06 55.0 7.1 21 195-215 2-22 (173)
322 cd01121 Sms Sms (bacterial rad 95.0 0.12 2.6E-06 59.0 10.1 82 192-281 81-167 (372)
323 cd03216 ABC_Carb_Monos_I This 95.0 0.062 1.3E-06 53.9 7.0 117 193-316 26-146 (163)
324 PRK11608 pspF phage shock prot 95.0 0.059 1.3E-06 60.8 7.6 45 167-215 7-51 (326)
325 TIGR02239 recomb_RAD51 DNA rep 95.0 0.12 2.7E-06 57.6 10.0 59 191-250 94-156 (316)
326 PRK15429 formate hydrogenlyase 94.9 0.14 3E-06 64.6 11.6 133 167-312 377-521 (686)
327 KOG0733 Nuclear AAA ATPase (VC 94.9 0.33 7.2E-06 56.3 13.0 155 193-369 545-718 (802)
328 TIGR00064 ftsY signal recognit 94.9 0.078 1.7E-06 57.8 8.0 89 191-282 70-164 (272)
329 PRK10867 signal recognition pa 94.9 0.066 1.4E-06 62.0 7.7 24 192-215 99-122 (433)
330 cd03222 ABC_RNaseL_inhibitor T 94.9 0.12 2.7E-06 52.2 8.8 23 193-215 25-47 (177)
331 PF03215 Rad17: Rad17 cell cyc 94.9 0.16 3.6E-06 60.4 11.2 59 167-230 20-78 (519)
332 cd03223 ABCD_peroxisomal_ALDP 94.9 0.16 3.5E-06 51.1 9.7 116 193-315 27-151 (166)
333 TIGR00708 cobA cob(I)alamin ad 94.9 0.11 2.5E-06 51.4 8.3 118 193-312 5-140 (173)
334 PRK05022 anaerobic nitric oxid 94.9 0.13 2.7E-06 62.3 10.5 132 167-312 188-332 (509)
335 PRK09270 nucleoside triphospha 94.9 0.1 2.3E-06 55.7 8.8 25 191-215 31-55 (229)
336 PLN03187 meiotic recombination 94.8 0.16 3.4E-06 57.0 10.3 60 191-251 124-187 (344)
337 PF01583 APS_kinase: Adenylyls 94.8 0.032 6.9E-07 54.3 4.1 36 193-230 2-37 (156)
338 KOG1947 Leucine rich repeat pr 94.7 0.0029 6.2E-08 77.2 -4.1 16 1150-1165 426-441 (482)
339 COG1102 Cmk Cytidylate kinase 94.7 0.055 1.2E-06 51.6 5.2 44 195-251 2-45 (179)
340 COG0468 RecA RecA/RadA recombi 94.7 0.11 2.4E-06 56.1 8.2 88 191-281 58-150 (279)
341 cd01122 GP4d_helicase GP4d_hel 94.7 0.2 4.4E-06 55.3 10.8 53 192-247 29-81 (271)
342 PF00485 PRK: Phosphoribulokin 94.7 0.084 1.8E-06 54.8 7.3 21 195-215 1-21 (194)
343 cd03230 ABC_DR_subfamily_A Thi 94.6 0.096 2.1E-06 53.2 7.5 120 192-317 25-160 (173)
344 PRK05439 pantothenate kinase; 94.6 0.16 3.5E-06 55.9 9.4 80 190-273 83-166 (311)
345 PRK10733 hflB ATP-dependent me 94.6 0.16 3.5E-06 63.0 10.6 157 167-343 153-336 (644)
346 PTZ00035 Rad51 protein; Provis 94.6 0.22 4.8E-06 56.2 10.7 59 191-250 116-178 (337)
347 TIGR02236 recomb_radA DNA repa 94.6 0.17 3.6E-06 57.1 10.0 58 191-249 93-154 (310)
348 cd02025 PanK Pantothenate kina 94.5 0.1 2.2E-06 55.1 7.6 21 195-215 1-21 (220)
349 PRK08533 flagellar accessory p 94.5 0.13 2.8E-06 54.7 8.5 49 192-244 23-71 (230)
350 PRK13948 shikimate kinase; Pro 94.5 0.17 3.8E-06 51.3 8.7 24 192-215 9-32 (182)
351 PF12775 AAA_7: P-loop contain 94.5 0.04 8.7E-07 60.1 4.5 33 176-215 23-55 (272)
352 PLN00020 ribulose bisphosphate 94.4 0.053 1.1E-06 59.8 5.2 26 191-216 146-171 (413)
353 PF07726 AAA_3: ATPase family 94.4 0.023 4.9E-07 52.6 2.0 28 196-225 2-29 (131)
354 PRK10463 hydrogenase nickel in 94.4 0.36 7.8E-06 52.3 11.4 86 191-282 102-194 (290)
355 PTZ00301 uridine kinase; Provi 94.4 0.041 8.9E-07 57.2 4.2 23 193-215 3-25 (210)
356 PF13306 LRR_5: Leucine rich r 94.4 0.096 2.1E-06 50.2 6.6 102 566-672 4-108 (129)
357 cd02019 NK Nucleoside/nucleoti 94.4 0.029 6.3E-07 46.6 2.4 22 195-216 1-22 (69)
358 TIGR02858 spore_III_AA stage I 94.4 0.18 3.9E-06 54.6 9.1 127 175-316 98-233 (270)
359 PRK06547 hypothetical protein; 94.3 0.052 1.1E-06 54.6 4.6 26 191-216 13-38 (172)
360 COG1066 Sms Predicted ATP-depe 94.3 0.16 3.5E-06 56.3 8.6 82 192-282 92-178 (456)
361 COG2842 Uncharacterized ATPase 94.3 0.52 1.1E-05 50.3 12.0 97 194-298 95-191 (297)
362 PF13238 AAA_18: AAA domain; P 94.3 0.029 6.3E-07 53.8 2.7 21 196-216 1-21 (129)
363 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.23 4.9E-06 53.3 9.8 42 191-234 18-59 (229)
364 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.059 1.3E-06 59.2 5.2 51 165-215 60-110 (358)
365 PRK06002 fliI flagellum-specif 94.3 0.18 3.8E-06 58.2 9.2 87 192-281 164-263 (450)
366 PRK08972 fliI flagellum-specif 94.3 0.14 3.1E-06 58.6 8.4 86 192-281 161-261 (444)
367 cd03246 ABCC_Protease_Secretio 94.2 0.14 3.1E-06 51.9 7.7 23 193-215 28-50 (173)
368 PRK04328 hypothetical protein; 94.2 0.13 2.8E-06 55.6 7.8 42 191-234 21-62 (249)
369 COG0396 sufC Cysteine desulfur 94.2 0.41 8.9E-06 48.9 10.5 62 261-324 151-216 (251)
370 cd01125 repA Hexameric Replica 94.2 0.28 6E-06 52.9 10.3 21 195-215 3-23 (239)
371 COG1121 ZnuC ABC-type Mn/Zn tr 94.2 0.19 4.2E-06 53.0 8.5 123 193-317 30-204 (254)
372 cd03229 ABC_Class3 This class 94.2 0.12 2.5E-06 52.8 7.0 23 193-215 26-48 (178)
373 cd03217 ABC_FeS_Assembly ABC-t 94.2 0.19 4.2E-06 52.4 8.8 24 193-216 26-49 (200)
374 KOG1051 Chaperone HSP104 and r 94.2 0.34 7.4E-06 60.3 11.9 120 167-297 563-685 (898)
375 COG1126 GlnQ ABC-type polar am 94.2 0.26 5.7E-06 49.8 8.9 125 192-319 27-203 (240)
376 PRK14723 flhF flagellar biosyn 94.1 0.25 5.5E-06 60.8 10.6 88 193-282 185-273 (767)
377 COG1136 SalX ABC-type antimicr 94.1 0.33 7.2E-06 50.4 9.9 61 259-319 147-210 (226)
378 TIGR00554 panK_bact pantothena 94.1 0.19 4.2E-06 54.9 8.7 25 191-215 60-84 (290)
379 cd01134 V_A-ATPase_A V/A-type 94.1 0.32 6.9E-06 53.7 10.2 59 178-245 147-206 (369)
380 cd01135 V_A-ATPase_B V/A-type 94.1 0.18 4E-06 53.9 8.3 90 192-281 68-175 (276)
381 PTZ00088 adenylate kinase 1; P 94.1 0.043 9.4E-07 57.9 3.6 21 195-215 8-28 (229)
382 TIGR00150 HI0065_YjeE ATPase, 94.1 0.068 1.5E-06 50.5 4.5 40 173-216 6-45 (133)
383 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.068 1.5E-06 56.1 5.1 23 193-215 29-51 (213)
384 COG1428 Deoxynucleoside kinase 94.1 0.035 7.7E-07 55.8 2.7 24 193-216 4-27 (216)
385 COG4618 ArpD ABC-type protease 94.1 0.27 5.8E-06 56.1 9.7 23 193-215 362-384 (580)
386 PRK14721 flhF flagellar biosyn 94.1 0.2 4.4E-06 57.6 9.2 88 192-281 190-278 (420)
387 PRK05973 replicative DNA helic 94.0 0.19 4E-06 53.1 8.2 49 192-244 63-111 (237)
388 TIGR00390 hslU ATP-dependent p 94.0 0.12 2.6E-06 58.5 7.1 81 165-247 11-103 (441)
389 PF03308 ArgK: ArgK protein; 94.0 0.085 1.8E-06 55.2 5.5 59 174-236 14-72 (266)
390 KOG0734 AAA+-type ATPase conta 94.0 0.1 2.2E-06 59.2 6.4 50 167-216 305-360 (752)
391 PRK12678 transcription termina 94.0 0.041 8.8E-07 64.0 3.4 99 177-281 405-512 (672)
392 PRK05480 uridine/cytidine kina 94.0 0.044 9.4E-07 57.8 3.5 26 191-216 4-29 (209)
393 PRK00889 adenylylsulfate kinas 94.0 0.085 1.8E-06 53.7 5.5 25 192-216 3-27 (175)
394 TIGR00235 udk uridine kinase. 94.0 0.046 1E-06 57.4 3.6 25 191-215 4-28 (207)
395 PTZ00185 ATPase alpha subunit; 93.9 0.27 5.8E-06 56.9 9.6 90 192-281 188-298 (574)
396 COG4088 Predicted nucleotide k 93.9 0.13 2.9E-06 51.0 6.3 22 194-215 2-23 (261)
397 PRK05986 cob(I)alamin adenolsy 93.9 0.16 3.4E-06 51.2 7.0 120 192-313 21-159 (191)
398 PRK09280 F0F1 ATP synthase sub 93.8 0.21 4.5E-06 57.9 8.7 89 192-281 143-247 (463)
399 PRK06995 flhF flagellar biosyn 93.8 0.3 6.6E-06 57.2 10.2 87 193-281 256-343 (484)
400 COG4181 Predicted ABC-type tra 93.8 0.55 1.2E-05 45.4 9.8 86 235-320 121-215 (228)
401 PRK06731 flhF flagellar biosyn 93.8 0.27 5.8E-06 53.2 9.0 89 193-283 75-165 (270)
402 PF07724 AAA_2: AAA domain (Cd 93.8 0.027 5.9E-07 56.6 1.4 42 193-236 3-45 (171)
403 PRK13539 cytochrome c biogenes 93.8 0.28 6.1E-06 51.5 9.1 25 192-216 27-51 (207)
404 PF13671 AAA_33: AAA domain; P 93.8 0.049 1.1E-06 53.4 3.1 21 195-215 1-21 (143)
405 cd02028 UMPK_like Uridine mono 93.8 0.094 2E-06 53.4 5.2 21 195-215 1-21 (179)
406 COG1703 ArgK Putative periplas 93.7 0.067 1.4E-06 56.7 4.1 62 176-241 38-99 (323)
407 PF00154 RecA: recA bacterial 93.7 0.14 3.1E-06 56.4 6.7 84 191-281 51-140 (322)
408 COG0563 Adk Adenylate kinase a 93.7 0.082 1.8E-06 53.4 4.6 22 195-216 2-23 (178)
409 PRK11823 DNA repair protein Ra 93.7 0.26 5.6E-06 58.1 9.4 82 192-281 79-165 (446)
410 TIGR00416 sms DNA repair prote 93.6 0.33 7.2E-06 57.2 10.2 95 175-281 80-179 (454)
411 PRK06762 hypothetical protein; 93.6 0.053 1.1E-06 54.7 3.1 22 194-215 3-24 (166)
412 PRK07276 DNA polymerase III su 93.6 1.9 4.1E-05 47.2 15.1 68 271-339 103-172 (290)
413 PRK05917 DNA polymerase III su 93.6 1.6 3.4E-05 47.6 14.3 131 175-329 6-154 (290)
414 KOG0738 AAA+-type ATPase [Post 93.6 0.59 1.3E-05 51.3 10.8 23 193-215 245-267 (491)
415 PF00910 RNA_helicase: RNA hel 93.5 0.041 8.8E-07 50.6 1.9 21 196-216 1-21 (107)
416 cd03244 ABCC_MRP_domain2 Domai 93.5 0.45 9.9E-06 50.6 10.3 23 193-215 30-52 (221)
417 cd02027 APSK Adenosine 5'-phos 93.5 0.12 2.6E-06 50.9 5.2 21 195-215 1-21 (149)
418 TIGR03575 selen_PSTK_euk L-ser 93.5 0.15 3.3E-06 56.9 6.6 21 196-216 2-22 (340)
419 TIGR03498 FliI_clade3 flagella 93.4 0.27 5.9E-06 56.6 8.8 86 192-281 139-239 (418)
420 TIGR01425 SRP54_euk signal rec 93.4 0.22 4.8E-06 57.3 8.0 24 192-215 99-122 (429)
421 PRK03839 putative kinase; Prov 93.3 0.056 1.2E-06 55.4 2.8 22 195-216 2-23 (180)
422 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.19 4.2E-06 54.6 7.1 41 191-233 34-74 (259)
423 TIGR02655 circ_KaiC circadian 93.3 0.32 6.8E-06 58.4 9.5 65 176-249 250-314 (484)
424 COG0714 MoxR-like ATPases [Gen 93.3 0.13 2.8E-06 58.4 5.9 62 167-241 25-86 (329)
425 PRK13765 ATP-dependent proteas 93.3 0.14 3E-06 62.5 6.3 75 166-250 31-105 (637)
426 PRK10820 DNA-binding transcrip 93.2 0.25 5.5E-06 59.7 8.7 45 167-215 205-249 (520)
427 PF13504 LRR_7: Leucine rich r 93.2 0.052 1.1E-06 30.6 1.3 14 599-612 3-16 (17)
428 PRK12597 F0F1 ATP synthase sub 93.2 0.21 4.5E-06 58.1 7.5 89 192-281 142-246 (461)
429 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.16 3.6E-06 54.3 6.1 86 192-281 68-170 (274)
430 PF13481 AAA_25: AAA domain; P 93.2 0.3 6.6E-06 50.7 8.2 41 194-234 33-81 (193)
431 cd01136 ATPase_flagellum-secre 93.2 0.45 9.7E-06 52.9 9.7 86 192-281 68-168 (326)
432 cd03282 ABC_MSH4_euk MutS4 hom 93.2 0.11 2.4E-06 54.0 4.8 121 192-319 28-158 (204)
433 PRK00625 shikimate kinase; Pro 93.1 0.062 1.3E-06 54.1 2.7 21 195-215 2-22 (173)
434 PRK05201 hslU ATP-dependent pr 93.1 0.2 4.4E-06 56.7 6.9 81 165-247 14-106 (443)
435 TIGR03305 alt_F1F0_F1_bet alte 93.1 0.24 5.2E-06 57.2 7.6 89 192-281 137-241 (449)
436 cd03369 ABCC_NFT1 Domain 2 of 93.1 0.78 1.7E-05 48.2 11.2 24 192-215 33-56 (207)
437 PRK04040 adenylate kinase; Pro 93.1 0.071 1.5E-06 54.6 3.0 22 194-215 3-24 (188)
438 PRK13543 cytochrome c biogenes 93.0 0.73 1.6E-05 48.7 10.9 25 192-216 36-60 (214)
439 cd03213 ABCG_EPDR ABCG transpo 93.0 0.57 1.2E-05 48.6 9.7 24 192-215 34-57 (194)
440 PRK10416 signal recognition pa 93.0 0.6 1.3E-05 52.2 10.4 26 191-216 112-137 (318)
441 PF13504 LRR_7: Leucine rich r 93.0 0.072 1.6E-06 30.1 1.6 16 1117-1132 2-17 (17)
442 TIGR03522 GldA_ABC_ATP gliding 92.9 0.57 1.2E-05 52.4 10.4 24 192-215 27-50 (301)
443 PRK06217 hypothetical protein; 92.9 0.15 3.2E-06 52.4 5.2 22 195-216 3-24 (183)
444 PF08433 KTI12: Chromatin asso 92.9 0.16 3.4E-06 55.2 5.6 23 194-216 2-24 (270)
445 COG2019 AdkA Archaeal adenylat 92.9 0.092 2E-06 50.3 3.3 23 193-215 4-26 (189)
446 TIGR03740 galliderm_ABC gallid 92.9 0.62 1.4E-05 49.6 10.2 23 193-215 26-48 (223)
447 TIGR01360 aden_kin_iso1 adenyl 92.9 0.08 1.7E-06 54.8 3.3 24 192-215 2-25 (188)
448 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.22 4.8E-06 49.6 6.2 116 194-317 26-145 (157)
449 PRK09544 znuC high-affinity zi 92.8 0.5 1.1E-05 51.3 9.3 25 192-216 29-53 (251)
450 TIGR00764 lon_rel lon-related 92.8 0.22 4.8E-06 61.0 7.3 75 165-250 17-92 (608)
451 PF10236 DAP3: Mitochondrial r 92.8 0.61 1.3E-05 52.1 10.1 49 323-372 258-306 (309)
452 COG0467 RAD55 RecA-superfamily 92.8 0.1 2.2E-06 57.1 4.0 42 191-234 21-62 (260)
453 KOG3347 Predicted nucleotide k 92.7 0.14 3E-06 48.0 4.1 69 193-271 7-75 (176)
454 PRK07594 type III secretion sy 92.7 0.37 8E-06 55.6 8.4 86 192-281 154-254 (433)
455 COG0003 ArsA Predicted ATPase 92.7 0.14 3.1E-06 56.6 4.9 49 193-243 2-50 (322)
456 PF06745 KaiC: KaiC; InterPro 92.7 0.11 2.3E-06 55.7 3.9 41 192-234 18-59 (226)
457 PRK08927 fliI flagellum-specif 92.6 0.55 1.2E-05 54.2 9.7 86 192-281 157-257 (442)
458 cd03232 ABC_PDR_domain2 The pl 92.6 0.49 1.1E-05 49.0 8.6 23 193-215 33-55 (192)
459 COG1936 Predicted nucleotide k 92.6 0.091 2E-06 51.0 2.8 20 195-214 2-21 (180)
460 cd03215 ABC_Carb_Monos_II This 92.6 0.88 1.9E-05 46.6 10.4 24 193-216 26-49 (182)
461 cd03245 ABCC_bacteriocin_expor 92.5 0.62 1.3E-05 49.5 9.6 24 192-215 29-52 (220)
462 TIGR01069 mutS2 MutS2 family p 92.5 0.077 1.7E-06 66.7 2.9 24 192-215 321-344 (771)
463 TIGR02322 phosphon_PhnN phosph 92.5 0.09 1.9E-06 53.9 3.0 23 194-216 2-24 (179)
464 PRK09519 recA DNA recombinatio 92.5 0.33 7.1E-06 60.0 8.0 84 191-281 58-147 (790)
465 PLN02348 phosphoribulokinase 92.4 0.35 7.5E-06 54.6 7.5 25 191-215 47-71 (395)
466 PRK10751 molybdopterin-guanine 92.4 0.13 2.7E-06 51.3 3.7 25 192-216 5-29 (173)
467 TIGR03574 selen_PSTK L-seryl-t 92.4 0.19 4.2E-06 54.5 5.6 21 195-215 1-21 (249)
468 PRK09580 sufC cysteine desulfu 92.4 0.68 1.5E-05 50.3 9.9 24 193-216 27-50 (248)
469 cd02024 NRK1 Nicotinamide ribo 92.4 0.08 1.7E-06 53.8 2.3 21 195-215 1-21 (187)
470 PRK06793 fliI flagellum-specif 92.4 0.69 1.5E-05 53.4 10.1 86 192-281 155-255 (432)
471 PRK08149 ATP synthase SpaL; Va 92.4 0.64 1.4E-05 53.6 9.7 86 192-281 150-250 (428)
472 cd03253 ABCC_ATM1_transporter 92.3 0.82 1.8E-05 49.2 10.3 23 193-215 27-49 (236)
473 PRK00131 aroK shikimate kinase 92.3 0.096 2.1E-06 53.4 2.9 23 193-215 4-26 (175)
474 cd02023 UMPK Uridine monophosp 92.3 0.082 1.8E-06 55.2 2.4 21 195-215 1-21 (198)
475 PRK15453 phosphoribulokinase; 92.3 0.52 1.1E-05 50.6 8.3 24 192-215 4-27 (290)
476 PRK05922 type III secretion sy 92.3 0.58 1.3E-05 54.0 9.3 86 192-281 156-256 (434)
477 COG4133 CcmA ABC-type transpor 92.3 0.96 2.1E-05 44.8 9.2 22 194-215 29-50 (209)
478 PF00625 Guanylate_kin: Guanyl 92.3 0.13 2.9E-06 52.7 3.9 37 193-231 2-38 (183)
479 COG1643 HrpA HrpA-like helicas 92.3 0.73 1.6E-05 57.7 10.7 132 172-314 52-207 (845)
480 KOG0473 Leucine-rich repeat pr 92.2 0.0054 1.2E-07 61.5 -6.0 87 586-673 30-117 (326)
481 PRK06936 type III secretion sy 92.2 0.5 1.1E-05 54.5 8.7 86 192-281 161-261 (439)
482 TIGR01359 UMP_CMP_kin_fam UMP- 92.2 0.085 1.8E-06 54.3 2.4 21 195-215 1-21 (183)
483 COG1124 DppF ABC-type dipeptid 92.2 0.16 3.5E-06 52.3 4.2 24 192-215 32-55 (252)
484 KOG3928 Mitochondrial ribosome 92.1 1.5 3.2E-05 48.8 11.6 59 320-379 402-460 (461)
485 cd02029 PRK_like Phosphoribulo 92.1 0.26 5.6E-06 52.4 5.7 21 195-215 1-21 (277)
486 KOG0924 mRNA splicing factor A 92.1 0.82 1.8E-05 53.6 10.0 114 194-314 372-512 (1042)
487 TIGR03496 FliI_clade1 flagella 92.1 0.5 1.1E-05 54.5 8.5 86 192-281 136-236 (411)
488 TIGR03771 anch_rpt_ABC anchore 92.1 0.85 1.8E-05 48.5 9.9 24 193-216 6-29 (223)
489 cd02021 GntK Gluconate kinase 92.1 0.096 2.1E-06 51.8 2.5 22 195-216 1-22 (150)
490 cd00071 GMPK Guanosine monopho 92.1 0.12 2.5E-06 50.0 2.9 21 195-215 1-21 (137)
491 COG0465 HflB ATP-dependent Zn 92.1 1.9 4.1E-05 51.6 13.3 179 167-370 151-356 (596)
492 PF03193 DUF258: Protein of un 92.0 0.24 5.2E-06 48.6 5.0 35 173-216 24-58 (161)
493 TIGR01039 atpD ATP synthase, F 92.0 0.59 1.3E-05 54.0 8.9 89 192-281 142-246 (461)
494 PRK13947 shikimate kinase; Pro 92.0 0.1 2.3E-06 52.9 2.7 21 195-215 3-23 (171)
495 KOG0736 Peroxisome assembly fa 92.0 4 8.6E-05 49.4 15.5 187 161-367 663-881 (953)
496 cd00227 CPT Chloramphenicol (C 91.9 0.11 2.4E-06 52.9 2.7 22 194-215 3-24 (175)
497 COG2401 ABC-type ATPase fused 91.9 0.17 3.7E-06 55.7 4.2 49 167-215 372-431 (593)
498 COG0529 CysC Adenylylsulfate k 91.9 0.15 3.2E-06 49.6 3.3 25 191-215 21-45 (197)
499 PF01078 Mg_chelatase: Magnesi 91.9 0.23 5E-06 50.6 4.9 41 167-215 4-44 (206)
500 PRK10923 glnG nitrogen regulat 91.8 0.58 1.3E-05 56.5 9.3 46 167-216 139-184 (469)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-84 Score=793.69 Aligned_cols=768 Identities=28% Similarity=0.412 Sum_probs=570.6
Q ss_pred hhHHHHHHHHHHHHhcChHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhhhhHhHHhh
Q 000782 5 EVFLSAFLQVLFDRLASPELLNVATRWKIDAELKNLTLLASKINVVLRDAEEKQVKDMAVRMWLDELRDVADDAEDVLDE 84 (1287)
Q Consensus 5 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~ 84 (1287)
++.++..++++.+.+... +....++++.+..|+..|..++.+++||++++.....+..|.+.+++++|++||+++.
T Consensus 2 ~~~~s~~~~~~~~~l~~~----~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRE----SECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHHHHHHH----HHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544422 2233356779999999999999999999999888888999999999999999999999
Q ss_pred hhhhHHhHHhhhhcccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCCCCc--ccccCCCccc
Q 000782 85 FSTEILRCRLEAERQENRNPLNGMFSHLNVFFNLQLACKIKSVTERLGDIVKQKAELGLRDDTLERPI--GLFRRIPTTS 162 (1287)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (1287)
|.......+..+.... +....... ....++++.+..+..+.+++..+.+....++.......... ......++.+
T Consensus 78 ~~v~~~~~~~~~~l~~-~~~~~~~~--c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~ 154 (889)
T KOG4658|consen 78 FLVEEIERKANDLLST-RSVERQRL--CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRP 154 (889)
T ss_pred HHHHHHHHHHhHHhhh-hHHHHHHH--hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCC
Confidence 9887655432221100 00000000 01256677888888888888888888777775432211111 1111122333
Q ss_pred CCCC-ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccc-cccccceeEEEEecCCCCHHHH
Q 000782 163 LVDD-RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEK-VNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 163 ~~~~-~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
..++ . ||.+..++++.+.|.++ +.++++|+||||+||||||++++++.. ++.+|+.++||+||+.++...+
T Consensus 155 ~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~i 227 (889)
T KOG4658|consen 155 IQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKI 227 (889)
T ss_pred CCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhH
Confidence 3333 5 99999999999999876 338999999999999999999999877 9999999999999999999999
Q ss_pred HHHHHHHccCCCCCC--CChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhH-
Q 000782 241 TKAILESLGESCGHI--TQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQI- 317 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~- 317 (1287)
+++|++.++...... ...++++..|.+.|++|||+|||||||+. .+|+.+..++|....||+|++|||++.|+..
T Consensus 228 q~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~ 305 (889)
T KOG4658|consen 228 QQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRA 305 (889)
T ss_pred HHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhcc
Confidence 999999998754332 23468899999999999999999999986 5799999999999899999999999999998
Q ss_pred hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCCCCHhHHHHHHccccc
Q 000782 318 VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQHILNSEVW 397 (1287)
Q Consensus 318 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 397 (1287)
+++...+++..|+.+|||.||++.||.... ...+.++++|++++++|+|+|||++++|+.|+.+++..+|+++.+...+
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 788889999999999999999999987643 3344599999999999999999999999999999999999999987655
Q ss_pred C----CCCCCCCchhHHHhhhcCCCCChhhHhhhhcccCCCceechHHHHHHHHHcCccccCCCCCChhhhHhHHHHHHh
Q 000782 398 E----LPDEKTGILPGLALSYHHLPSHLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDVGSHYFHDLL 473 (1287)
Q Consensus 398 ~----~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~ 473 (1287)
. .++....++.++.+||+.||++.|.||+|||+||+||.|+++.++.+|+||||+.+...+.+++++|+.|+.+|+
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 4 233356799999999999999999999999999999999999999999999999887778889999999999999
Q ss_pred hCCcceecC--CCccccchhhHHHHHHHhhcc-----ccEEEeccC------CCcCCCCcccEEEeEecccccccchhhh
Q 000782 474 SRSLFQRSS--RNISRFIMHDLINDLAQFAAG-----ERCLRLEDN------SQHKNHAKARHLSYIRQRRDAFMRFEAF 540 (1287)
Q Consensus 474 ~~~li~~~~--~~~~~~~mH~lv~~~a~~~~~-----~~~~~~~~~------~~~~~~~~~r~ls~~~~~~~~~~~~~~~ 540 (1287)
+++|++... .....|+|||+||++|.++++ ++...+..+ .+...+..+|+++++.... .....-
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~---~~~~~~ 541 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI---EHIAGS 541 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch---hhccCC
Confidence 999999866 255789999999999999999 555444432 2233455679999887532 122233
Q ss_pred ccCCCceEEecCCCCCcccccchhchHHHhcCCCcccEEEecCC-CCcccCccccCCCccceEecCCCCCcccchhhhcc
Q 000782 541 RSHKYLRTFLPLDGGFGICRITKKVTHDLLKNFSRLRVLSLSHY-EIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAAL 619 (1287)
Q Consensus 541 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L 619 (1287)
...+.++||.+..+.. ....+...+|..++.||||||++| .+..+|+.+++|.+||||+|+++.|+.+|.++++|
T Consensus 542 ~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 4566899999887641 125567788999999999999987 47799999999999999999999999999999999
Q ss_pred cCccEEeecCcccccccCCCCCCCCCceEEEecCCccccCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceE
Q 000782 620 YNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLS 699 (1287)
Q Consensus 620 ~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~ 699 (1287)
..|.+||+..+.....+|..+..|.+||+|.+.......-...++.+.+|++|..+.....+...+..+-.+.+|+....
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 99999999999877788888888999999999776522222234555666666555443333322344444444432111
Q ss_pred EccccCCCCcchhhhccCCCCCCCCeEEEEecCCCCCCchHHHhccCC---CCCCCCeEEEeecCCCCCCCCCCCCCCCC
Q 000782 700 IIGLENVDKDTDAEDANLKDKKYLNKLELQWSSGHDGMIDEDVLEALQ---PHWNLKELSIKQYSGAKFPRWTGDPSYSN 776 (1287)
Q Consensus 700 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 776 (1287)
...+.. .......+.+..+.+|+.|.+..+....... ...+... ..+++..+.+.+......+.|.. ..++
T Consensus 698 ~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~--~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~--f~~~ 771 (889)
T KOG4658|consen 698 SLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVI--EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL--FAPH 771 (889)
T ss_pred hhhhcc--cccceeecccccccCcceEEEEcCCCchhhc--ccccccchhhhHHHHHHHHhhccccccccchhh--ccCc
Confidence 111111 2233444566677777777776654422111 0000000 12234444444455555555553 2567
Q ss_pred eeEEEEecCCCCCCCCC-CCCcccccc
Q 000782 777 LVFLSLINCRNCTYLPP-LGQLPSLKN 802 (1287)
Q Consensus 777 L~~L~L~~~~~~~~l~~-l~~l~~L~~ 802 (1287)
|+.|.+..|...+.+.+ ...+..++.
T Consensus 772 L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 772 LTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred ccEEEEecccccccCCCHHHHhhhccc
Confidence 77777777766543333 444444444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.8e-62 Score=632.30 Aligned_cols=470 Identities=20% Similarity=0.320 Sum_probs=332.1
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEe---cCC--------
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFV---SDE-------- 234 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-------- 234 (1287)
+.+|||++.++++..+|.-. .+++++|+|+||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred ccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccc
Confidence 47999999999999988543 35789999999999999999999998 67888998887642 111
Q ss_pred ---CC-HHHHHHHHHHHccCCCCC-CCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc
Q 000782 235 ---FD-LVKVTKAILESLGESCGH-ITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT 309 (1287)
Q Consensus 235 ---~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt 309 (1287)
+. ...++++++.++....+. ... ...+++.++++|+||||||||+. ..|+.+.....+.++||+|||||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEe
Confidence 11 123444555544332211 111 24678889999999999999864 67888877666667899999999
Q ss_pred CchhhHhHhcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCCCCHhHHH
Q 000782 310 RSENVAQIVGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQ 389 (1287)
Q Consensus 310 R~~~v~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~ 389 (1287)
|+..++..++..++|+++.+++++||+||+++||+... .++.+++++++|+++|+|+|||++++|+.|+.+ +..+|+
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~ 408 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWM 408 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHH
Confidence 99999988777789999999999999999999997643 245688999999999999999999999999987 679999
Q ss_pred HHHcccccCCCCCCCCchhHHHhhhcCCCC-ChhhHhhhhcccCCCceechHHHHHHHHHcCccccCCCCCChhhhHhHH
Q 000782 390 HILNSEVWELPDEKTGILPGLALSYHHLPS-HLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDVGSHY 468 (1287)
Q Consensus 390 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 468 (1287)
.++++..... ...|.++|++||+.|++ ..|.||+++|+||.++.++ .+..|+|.+... ++..
T Consensus 409 ~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~ 471 (1153)
T PLN03210 409 DMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIG 471 (1153)
T ss_pred HHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhC
Confidence 9998765433 24599999999999987 5999999999999987654 467788875442 1223
Q ss_pred HHHHhhCCcceecCCCccccchhhHHHHHHHhhccccE-------EEeccC------CCcCCCCcccEEEeEeccccc-c
Q 000782 469 FHDLLSRSLFQRSSRNISRFIMHDLINDLAQFAAGERC-------LRLEDN------SQHKNHAKARHLSYIRQRRDA-F 534 (1287)
Q Consensus 469 l~~L~~~~li~~~~~~~~~~~mH~lv~~~a~~~~~~~~-------~~~~~~------~~~~~~~~~r~ls~~~~~~~~-~ 534 (1287)
++.|+++|||+... .++.|||++|+||++++.++. +..... ........++.+++....... .
T Consensus 472 l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 472 LKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred hHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 88999999998764 579999999999999987653 111100 001122344555543221111 1
Q ss_pred cchhhhccCCCceEEecCCCCCcc-cccchhchHHHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccc
Q 000782 535 MRFEAFRSHKYLRTFLPLDGGFGI-CRITKKVTHDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP 613 (1287)
Q Consensus 535 ~~~~~~~~~~~lr~l~~~~~~~~~-~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp 613 (1287)
....+|.++++|+.|.++...+.. ......++.++..-...||.|++.++.+..+|..| ...+|++|+|++|.+..+|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence 122345666777766654432110 00011122222222245777777777777777666 3567777777777777777
Q ss_pred hhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecCCc-cccCCcCCCCCCCCCcc
Q 000782 614 ESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCN-LQQLPPHMGGLKNLRTL 672 (1287)
Q Consensus 614 ~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~-l~~lp~~i~~L~~L~~L 672 (1287)
..+..+++|+.|+|++|..+..+|. ++.+++|++|++++|. +..+|..++++++|+.|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 7777777777777777666666664 6677777777777764 55666666666666655
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-43 Score=462.84 Aligned_cols=530 Identities=21% Similarity=0.224 Sum_probs=313.9
Q ss_pred CCceEEecCCCCCcccccchhchHHHhcCCCcccEEEecCCCCc-ccCcccc-CCCccceEecCCCCCc-ccchhhhccc
Q 000782 544 KYLRTFLPLDGGFGICRITKKVTHDLLKNFSRLRVLSLSHYEIV-ELPDLIG-DLKHLRYLDLSNTSIK-SLPESIAALY 620 (1287)
Q Consensus 544 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~~~-~l~~Lr~L~Ls~n~i~-~lp~~i~~L~ 620 (1287)
.+++++.+.++.. ....+..|..+++|++|+|++|++. .+|..+. .+.+|++|+|++|.++ .+|. +.++
T Consensus 69 ~~v~~L~L~~~~i------~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKNI------SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCCc------cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 3566665554322 1122345666777777777777765 5665443 6777777777777665 3443 4567
Q ss_pred CccEEeecCcccccccCCCCCCCCCceEEEecCCccc-cCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceE
Q 000782 621 NLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQ-QLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLS 699 (1287)
Q Consensus 621 ~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~ 699 (1287)
+|++|+|++|.+.+.+|..++++++|++|++++|.+. .+|..++++++|++|++..+.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--------------------- 199 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--------------------- 199 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC---------------------
Confidence 7777777777666666777777777777777777654 555556666666655221110
Q ss_pred EccccCCCCcchhhhccCCCCCCCCeEEEEecCCCCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeE
Q 000782 700 IIGLENVDKDTDAEDANLKDKKYLNKLELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVF 779 (1287)
Q Consensus 700 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~ 779 (1287)
-...+|..+. .+++|+.
T Consensus 200 -------------------------------------------------------------l~~~~p~~l~--~l~~L~~ 216 (968)
T PLN00113 200 -------------------------------------------------------------LVGQIPRELG--QMKSLKW 216 (968)
T ss_pred -------------------------------------------------------------CcCcCChHHc--CcCCccE
Confidence 0012333332 3677777
Q ss_pred EEEecCCCCCCCCC-CCCcccccceeeccCcceeEeCCccccCCccccccccccceeeccCCCCCCcccCCCCCCCCccc
Q 000782 780 LSLINCRNCTYLPP-LGQLPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLH 858 (1287)
Q Consensus 780 L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~ 858 (1287)
|+|++|.+.+.+|. ++++++|++|++++|.+.+.++..+ ..+++|++|+++++ .+.+..+..+..+++|+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--------GNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLI 287 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH--------hCCCCCCEEECcCC-eeeccCchhHhhccCcC
Confidence 77777777666665 6777777777777776554443322 33555555555542 22222333344455555
Q ss_pred eEeecCCCCCcccCCCCCCCcCEEEEccCCCccccCCCCccceeeeeccchhhhhhhcccCccceeeeccccccccchhh
Q 000782 859 ELCIENCPKFSKEIPRSLVSLKTLEILNCRELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASE 938 (1287)
Q Consensus 859 ~L~l~~c~~l~~~~p~~l~~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 938 (1287)
.|++++ +++.+.+|..+.++++|+.+++++|.+.+..| ..+.
T Consensus 288 ~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~---------------~~~~---------------------- 329 (968)
T PLN00113 288 SLDLSD-NSLSGEIPELVIQLQNLEILHLFSNNFTGKIP---------------VALT---------------------- 329 (968)
T ss_pred EEECcC-CeeccCCChhHcCCCCCcEEECCCCccCCcCC---------------hhHh----------------------
Confidence 555555 24444444444444444444444443333222 2333
Q ss_pred hhccCCCccceEeeccccccccccccccccccccccceecccccccccccccccCcCCCcEEEeccccCcCCCCcccCCC
Q 000782 939 FFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSL 1018 (1287)
Q Consensus 939 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l 1018 (1287)
++++|+.|++++|......+..+ ..+++|+.|++++|.+.+..|..+.... .|+.|++++|...+.+|..+..+
T Consensus 330 ---~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 330 ---SLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ---cCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCC
Confidence 44444444444444332222221 2345555666666665555554444433 66667777776666666666677
Q ss_pred CCCCeEEEecCCCCCccC-CccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCCCCcCCCCCCCCCccEEE
Q 000782 1019 KSLNTLKIINCPSLAALP-EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDGELPLTLQHLK 1097 (1287)
Q Consensus 1019 ~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 1097 (1287)
++|+.|++++|++.+..| .+..+++|+.|++++|.+.+.+|..+..+ ++|+.|+
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------------------------~~L~~L~ 458 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM-------------------------PSLQMLS 458 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC-------------------------CCCcEEE
Confidence 777777777777666555 55666777777777776665554433221 2566666
Q ss_pred eeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCc
Q 000782 1098 ISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICL 1177 (1287)
Q Consensus 1098 ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 1177 (1287)
+++|...+.+|..+ ..++|+.|++++|++++..+..+ ..+++|+.|++++|.....+|..+.++++|
T Consensus 459 L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~-----------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 459 LARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKL-----------GSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred CcCceeeeecCccc--ccccceEEECcCCccCCccChhh-----------hhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 66665555555422 34566777777776664332222 235566777777777666777788888888
Q ss_pred ceEEeccCCCccccCCC-CCCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccCCCCcCCCCCCCCCCcceeeeccCc
Q 000782 1178 DKLLISNCPKLVSFPAG-GLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFPEGGLPPNLKSLCIIECI 1256 (1287)
Q Consensus 1178 ~~L~Ls~n~~~~~~~~~-~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~l~~lp~~~~~~~L~~L~i~~c~ 1256 (1287)
++|+|++|.+.+.+|.. ..+++|+.|+|++|++.+.+|..+..+++|++|++++|++...+|....+.++....+.+++
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 88888888888777765 67788888888888888888888888888888888888888778866555444444444444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-41 Score=446.80 Aligned_cols=531 Identities=22% Similarity=0.226 Sum_probs=404.7
Q ss_pred CCcccEEEecCCCCc-ccCccccCCCccceEecCCCCCc-ccchhhh-cccCccEEeecCcccccccCCCCCCCCCceEE
Q 000782 573 FSRLRVLSLSHYEIV-ELPDLIGDLKHLRYLDLSNTSIK-SLPESIA-ALYNLQTLILYSCRYLIQLPKHMGDLFNLRFL 649 (1287)
Q Consensus 573 ~~~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~-~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 649 (1287)
..+++.|+|++|++. .+|..|..+++|++|+|++|.++ .+|..+. ++++|++|+|++|.+.+.+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 457899999999987 56788999999999999999998 7887665 999999999999988777775 568899999
Q ss_pred EecCCccc-cCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCCCCCCCCeEEE
Q 000782 650 DIRGCNLQ-QLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLEL 728 (1287)
Q Consensus 650 ~l~~n~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 728 (1287)
++++|.+. .+|..++
T Consensus 146 ~Ls~n~~~~~~p~~~~---------------------------------------------------------------- 161 (968)
T PLN00113 146 DLSNNMLSGEIPNDIG---------------------------------------------------------------- 161 (968)
T ss_pred ECcCCcccccCChHHh----------------------------------------------------------------
Confidence 99988765 3333222
Q ss_pred EecCCCCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCC-CCCcccccceeecc
Q 000782 729 QWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPP-LGQLPSLKNLIIEG 807 (1287)
Q Consensus 729 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 807 (1287)
.+++|++|+|++|.+.+.+|. ++++++|++|++++
T Consensus 162 --------------------------------------------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 162 --------------------------------------------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred --------------------------------------------cCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 256777888888888877776 89999999999999
Q ss_pred CcceeEeCCccccCCccccccccccceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCcCEEEEccC
Q 000782 808 MDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEILNC 887 (1287)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~~ 887 (1287)
|.+...++..+ ..+++|+.|++++ +.+....+..++.+++|++|++++ +++.+.+|..+.++++|+.+++
T Consensus 198 n~l~~~~p~~l--------~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 198 NQLVGQIPREL--------GQMKSLKWIYLGY-NNLSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred CCCcCcCChHH--------cCcCCccEEECcC-CccCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEEC
Confidence 98876665543 5578889998887 444444566678888999999988 4676678877888888888888
Q ss_pred CCccccCCCCccceeeeeccchhhhhhhcccCccceeeeccccccccchhhhhccCCCccceEeeccccccccccccccc
Q 000782 888 RELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLL 967 (1287)
Q Consensus 888 ~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 967 (1287)
++|.+.+..| ..+.++++|+.|++++|. +....+..+.++++|+.|++++|......+..+ .
T Consensus 268 ~~n~l~~~~p---------------~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~ 329 (968)
T PLN00113 268 YQNKLSGPIP---------------PSIFSLQKLISLDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--T 329 (968)
T ss_pred cCCeeeccCc---------------hhHhhccCcCEEECcCCe-eccCCChhHcCCCCCcEEECCCCccCCcCChhH--h
Confidence 7776655555 567778888888888874 333344556677888888888776655444333 3
Q ss_pred cccccccceecccccccccccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccC-CccCcCCcce
Q 000782 968 RNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP-EIDASSSLRY 1046 (1287)
Q Consensus 968 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~ 1046 (1287)
.+++|+.|++++|.+.+..|..+..++ +|+.|++++|...+.+|..+..+++|+.|++++|++.+..| .+..+++|+.
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 567777777777777766666555554 77777777777777777777777777777777777776666 5666777777
Q ss_pred EEeccCccccccCCCcccCCCCcccEEEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCc
Q 000782 1047 LQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGC 1126 (1287)
Q Consensus 1047 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n 1126 (1287)
|++++|.+.+..|..+..+ ++|+.|++++|...+.+|. .+..+++|++|++++|
T Consensus 409 L~L~~n~l~~~~p~~~~~l-------------------------~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKL-------------------------PLVYFLDISNNNLQGRINS-RKWDMPSLQMLSLARN 462 (968)
T ss_pred EECcCCEeeeECChhHhcC-------------------------CCCCEEECcCCcccCccCh-hhccCCCCcEEECcCc
Confidence 7777777766666544332 3788999999977766655 3467899999999999
Q ss_pred cCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCCC-CCCCCcceEEE
Q 000782 1127 SLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG-GLPPNLKSLSI 1205 (1287)
Q Consensus 1127 ~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~~~~L~~L~L 1205 (1287)
.+.+..+..+ ..++|+.|++++|.....+|..+.++++|+.|+|++|.+.+.+|.. ..+++|++|+|
T Consensus 463 ~~~~~~p~~~------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 463 KFFGGLPDSF------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred eeeeecCccc------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 8875433221 2478999999999998889999999999999999999999888875 78899999999
Q ss_pred ecCCCCCcCcccCCCCCCcCeEeeccCCCCcCCCCC-CCCCCcceeeeccCcCccCCCCCCCCccCccceEEEcCcCC
Q 000782 1206 SDCENLVTLPNQMQSMTSLQDLTISNCIHLESFPEG-GLPPNLKSLCIIECINLEAPSKWDLHKLRSIENFLISNASS 1282 (1287)
Q Consensus 1206 s~n~~~~~~~~~l~~l~~L~~L~l~~n~~l~~lp~~-~~~~~L~~L~i~~c~~L~~~~~~~l~~~~~L~~l~i~~n~~ 1282 (1287)
++|.+.+.+|..+..+++|++|++++|++...+|.. .-.++|+.|++.+|+-....+.. ..+..+....+.+|+.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST--GAFLAINASAVAGNID 606 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc--chhcccChhhhcCCcc
Confidence 999999999999999999999999999998888854 23467888888877655555543 3344455555566653
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.9e-42 Score=385.52 Aligned_cols=277 Identities=41% Similarity=0.684 Sum_probs=226.0
Q ss_pred chhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccC
Q 000782 171 REEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGE 250 (1287)
Q Consensus 171 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 250 (1287)
||.++++|.+.|... .++.++|+|+||||+||||||.+++++..++.+|+.++|+.++...+...++..|+++++.
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 789999999999874 2578999999999999999999999976789999999999999999999999999999987
Q ss_pred CCC---CCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHhcC-cCeEEc
Q 000782 251 SCG---HITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIVGT-VPVFHL 326 (1287)
Q Consensus 251 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 326 (1287)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 3467788999999999999999999999874 5888888888777789999999999999877664 678999
Q ss_pred cCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCCCCHhHHHHHHcccccCCC---CCC
Q 000782 327 QELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQHILNSEVWELP---DEK 403 (1287)
Q Consensus 327 ~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 403 (1287)
++|++++|++||++.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|..+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997655 22344667889999999999999999999999766567889998876444332 234
Q ss_pred CCchhHHHhhhcCCCCChhhHhhhhcccCCCceechHHHHHHHHHcCcccc
Q 000782 404 TGILPGLALSYHHLPSHLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYE 454 (1287)
Q Consensus 404 ~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~ 454 (1287)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+|||+|..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 568999999999999999999999999999999999999999999999975
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.3e-32 Score=283.64 Aligned_cols=477 Identities=21% Similarity=0.248 Sum_probs=280.8
Q ss_pred CcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecC
Q 000782 574 SRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRG 653 (1287)
Q Consensus 574 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~ 653 (1287)
.-|..|++++|.+..+-+.+.++..|.+|++++|.+.++|.+|+.+..++.|+.++|+ ..++|..++.+.+|++|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc
Confidence 4467788999999888888889999999999999999999999999999999999985 778888899999999999999
Q ss_pred CccccCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCCCCCCCCeEEEEecCC
Q 000782 654 CNLQQLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLELQWSSG 733 (1287)
Q Consensus 654 n~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 733 (1287)
|.+.++|++++.+-.|+.|+
T Consensus 124 n~~~el~~~i~~~~~l~dl~------------------------------------------------------------ 143 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLD------------------------------------------------------------ 143 (565)
T ss_pred cceeecCchHHHHhhhhhhh------------------------------------------------------------
Confidence 99888888887766555542
Q ss_pred CCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCCCcccccceeeccCcceeE
Q 000782 734 HDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPPLGQLPSLKNLIIEGMDAISR 813 (1287)
Q Consensus 734 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~ 813 (1287)
..+|++....+.++.+.+|..|.+.+|.+...
T Consensus 144 ------------------------------------------------~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 144 ------------------------------------------------ATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred ------------------------------------------------ccccccccCchHHHHHHHHHHhhccccchhhC
Confidence 11222222222234444444444444433211
Q ss_pred eCCccccCCccccccccccceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCcCEEEEccCCCcccc
Q 000782 814 VGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEILNCRELSWI 893 (1287)
Q Consensus 814 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~~~~~~~~ 893 (1287)
+...-.+..|++|+... |-+. .+|..++.+++|..+++..|++.
T Consensus 176 ----------------------------------~~~~i~m~~L~~ld~~~-N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 176 ----------------------------------PENHIAMKRLKHLDCNS-NLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred ----------------------------------CHHHHHHHHHHhcccch-hhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 00111234444444444 3333 45555555555555555444322
Q ss_pred CCCCccceeeeeccchhhhhhhcccCccceeeeccccccccchhhhhccCCCccceEeeccccccccccccccccccccc
Q 000782 894 PCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLR 973 (1287)
Q Consensus 894 ~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 973 (1287)
. .+.|.+|..|+++++..| .+..++.+...+ ++++.
T Consensus 220 ~-----------------lPef~gcs~L~Elh~g~N-~i~~lpae~~~~--------------------------L~~l~ 255 (565)
T KOG0472|consen 220 F-----------------LPEFPGCSLLKELHVGEN-QIEMLPAEHLKH--------------------------LNSLL 255 (565)
T ss_pred c-----------------CCCCCccHHHHHHHhccc-HHHhhHHHHhcc--------------------------cccce
Confidence 1 013334444555554444 333333333222 22333
Q ss_pred cceecccccccccccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceEEeccCc
Q 000782 974 RLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQCE 1053 (1287)
Q Consensus 974 ~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ls~n~ 1053 (1287)
.||+.+|.+ +.+|..++-+.+|++||+|+|.++...+.++++ .|+.|-+.+|+
T Consensus 256 vLDLRdNkl--------------------------ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 256 VLDLRDNKL--------------------------KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeecccccc--------------------------ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 334444443 334444555555555555555554433355554 55555555555
Q ss_pred cccccCCCcccCCCCcccEEEE-cCCCCC---------------CcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCC-
Q 000782 1054 ALRSLPAGLTCNKNLSLEFFEL-DGCSSL---------------ISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNT- 1116 (1287)
Q Consensus 1054 ~~~~~~~~~~~~~~~~L~~L~l-~~c~~l---------------~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~- 1116 (1287)
+-+.-.+.+.+.+..-|++|.= ..|..+ ..++.....-+.+.|++++- .++.+|..+|..-.
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~ 387 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKS 387 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhh
Confidence 4221111111000001111100 000000 01111122235788888886 56678888876543
Q ss_pred -CcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCC-C
Q 000782 1117 -CLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPA-G 1194 (1287)
Q Consensus 1117 -~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~ 1194 (1287)
-....+++.|++..+|.... .+..+...-+.+++.+..+|..+..+++|..|++++|.+- .+|. .
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~------------~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLV------------ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred cceEEEecccchHhhhhhhhH------------HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 37788899998888774321 1223333344556666677888888888888888887665 5554 3
Q ss_pred CCCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccCCCCcCCCCCC--CCCCcceeeeccCcCccCCCCCCCCccCcc
Q 000782 1195 GLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFPEGG--LPPNLKSLCIIECINLEAPSKWDLHKLRSI 1272 (1287)
Q Consensus 1195 ~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~l~~lp~~~--~~~~L~~L~i~~c~~L~~~~~~~l~~~~~L 1272 (1287)
+.+..|+.|+||.|.+ ..+|..+-.+..|+++-.++|+. +.++..+ ...+|..|++. ..++...|. .+.++.+|
T Consensus 455 ~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi-~~vd~~~l~nm~nL~tLDL~-nNdlq~IPp-~LgnmtnL 530 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQI-GSVDPSGLKNMRNLTTLDLQ-NNDLQQIPP-ILGNMTNL 530 (565)
T ss_pred hhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccc-cccChHHhhhhhhcceeccC-CCchhhCCh-hhccccce
Confidence 7777888888888865 45777776666777777777776 5665442 23566677753 455666655 37899999
Q ss_pred ceEEEcCcCCCC
Q 000782 1273 ENFLISNASSSH 1284 (1287)
Q Consensus 1273 ~~l~i~~n~~~~ 1284 (1287)
.+|++.|||+..
T Consensus 531 ~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 531 RHLELDGNPFRQ 542 (565)
T ss_pred eEEEecCCccCC
Confidence 999999999973
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=5.1e-29 Score=270.42 Aligned_cols=363 Identities=16% Similarity=0.108 Sum_probs=222.4
Q ss_pred cceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCcCEEEEccCCCccccCCCCccceeeeeccchhh
Q 000782 832 LEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEILNCRELSWIPCLPQIQNLILEECGQVI 911 (1287)
Q Consensus 832 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~ 911 (1287)
-+.|++++ +++..|....+..+|+|+++++.+ |.++ .+|..-.-...|+.+++.+|.+... .
T Consensus 80 t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~-N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv---------------~ 141 (873)
T KOG4194|consen 80 TQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNK-NELT-RIPRFGHESGHLEKLDLRHNLISSV---------------T 141 (873)
T ss_pred eeeeeccc-cccccCcHHHHhcCCcceeeeecc-chhh-hcccccccccceeEEeeeccccccc---------------c
Confidence 34455554 455555555566777777777777 6777 6775444444466666665543321 1
Q ss_pred hhhhcccCccceeeeccccccccchhhhhccCCCccceEeeccccccccccccccccccccccceecccccccccccccc
Q 000782 912 LESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGH 991 (1287)
Q Consensus 912 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 991 (1287)
.+.+..++.|+.|+|+.| .+..++...|..-.++++|++++|.+.+.....|. ++.+|..|.++.|+++.+++..|.
T Consensus 142 se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk 218 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFK 218 (873)
T ss_pred HHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcccccCHHHhh
Confidence 256666777888888877 66677766666677788888888777766555554 445777888888888877777777
Q ss_pred cCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccC-CccCcCCcceEEeccCccccccCCCcccCCCCcc
Q 000782 992 ALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP-EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSL 1070 (1287)
Q Consensus 992 ~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L 1070 (1287)
.++ .|+.|+|..|.+-..-...|.++++|+.|.+..|.+...-. .|..+.++++|+++.|++......++.++.
T Consensus 219 ~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt---- 293 (873)
T KOG4194|consen 219 RLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT---- 293 (873)
T ss_pred hcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc----
Confidence 776 77888887776544434567788888888888887765443 667778888888888876665555544433
Q ss_pred cEEEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCC
Q 000782 1071 EFFELDGCSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSS 1150 (1287)
Q Consensus 1071 ~~L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~ 1150 (1287)
+|+.|++|+|.+- .+....+..+++|++|+|++|+|+.++++. +..+
T Consensus 294 ---------------------~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~s-----------f~~L 340 (873)
T KOG4194|consen 294 ---------------------SLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGS-----------FRVL 340 (873)
T ss_pred ---------------------hhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhH-----------HHHH
Confidence 5566666666332 233334455566666666666666544332 2334
Q ss_pred CCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCCC----CCCCCcceEEEecCCCCCcCcccCCCCCCcCe
Q 000782 1151 SRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG----GLPPNLKSLSISDCENLVTLPNQMQSMTSLQD 1226 (1287)
Q Consensus 1151 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~----~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~ 1226 (1287)
..|++|.+++|.....-...|..+.+|++|||++|.+...+..+ ..+++|+.|.+.+|++..+...+|..+++|+.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 55666666666554444445556666666666666655444332 34566666666666655444456666666666
Q ss_pred EeeccCCCCcCCCCCCCCCCcceeeec
Q 000782 1227 LTISNCIHLESFPEGGLPPNLKSLCII 1253 (1287)
Q Consensus 1227 L~l~~n~~l~~lp~~~~~~~L~~L~i~ 1253 (1287)
|||.+|.+-..-|+..-+-.|++|-+.
T Consensus 421 LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred ecCCCCcceeecccccccchhhhhhhc
Confidence 666666653333333333455554443
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=8.9e-30 Score=292.11 Aligned_cols=267 Identities=25% Similarity=0.205 Sum_probs=190.1
Q ss_pred CCccceEeeccccccccccccccccccccccceecccccccccccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCe
Q 000782 944 TVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNT 1023 (1287)
Q Consensus 944 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~ 1023 (1287)
++|+.|+.+.|...+..... -..+|+++++++|.+++++ ++..... +|+.++..+|.. ..+|..+...++|+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p----~p~nl~~~dis~n~l~~lp-~wi~~~~-nle~l~~n~N~l-~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP----VPLNLQYLDISHNNLSNLP-EWIGACA-NLEALNANHNRL-VALPLRISRITSLVS 291 (1081)
T ss_pred cchheeeeccCcceeecccc----ccccceeeecchhhhhcch-HHHHhcc-cceEecccchhH-HhhHHHHhhhhhHHH
Confidence 34445555555444322211 2357888888888888776 6666655 888888888875 667777888888888
Q ss_pred EEEecCCCCCccCCccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCCCCcCCC--CCCCCCccEEEeeCC
Q 000782 1024 LKIINCPSLAALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPD--GELPLTLQHLKISNC 1101 (1287)
Q Consensus 1024 L~L~~n~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~ls~~ 1101 (1287)
|++..|.+....|......+|++|++..|.+.. .|..+......++..|+.+.++ +...|. ....+.|+.|.+.+|
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcC
Confidence 888888887655566668888899998887543 3433322222334444444333 222221 133456999999999
Q ss_pred CCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCcceEE
Q 000782 1102 PNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLL 1181 (1287)
Q Consensus 1102 ~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 1181 (1287)
........ ++.+..+|+.|+|++|+++++|..++. .+..|++|++++|... .+|..+.+++.|++|.
T Consensus 370 ~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~-----------kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 370 HLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLR-----------KLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred cccccchh-hhccccceeeeeecccccccCCHHHHh-----------chHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 76655432 578889999999999999998876654 4667899999998655 6788899999999999
Q ss_pred eccCCCccccCCCCCCCCcceEEEecCCCCCc-CcccCCCCCCcCeEeeccCCC
Q 000782 1182 ISNCPKLVSFPAGGLPPNLKSLSISDCENLVT-LPNQMQSMTSLQDLTISNCIH 1234 (1287)
Q Consensus 1182 Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~l~~n~~ 1234 (1287)
..+|.+. .+|+...++.|+++|+|.|++... +|..... ++|++||++||..
T Consensus 437 ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 9998887 777888999999999999998774 3433332 8999999999986
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=7.9e-28 Score=261.21 Aligned_cols=252 Identities=19% Similarity=0.168 Sum_probs=161.9
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCC-CCCCCCcccccceeeccCcceeEeCCccccCCcccccccccc
Q 000782 754 ELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTY-LPPLGQLPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSL 832 (1287)
Q Consensus 754 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~L 832 (1287)
.|.++.+..+.+|...+. .+++|+.|+|..|++... --.|.+|++|+.|.+.+|.+..--...|++ +.++
T Consensus 201 tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--------l~km 271 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG--------LEKM 271 (873)
T ss_pred eeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee--------eccc
Confidence 344444445555554442 366666666666665432 222666677777777666665544444433 5666
Q ss_pred ceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCcCEEEEccCCCccccCCCCccceeeeeccchhhh
Q 000782 833 EALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEILNCRELSWIPCLPQIQNLILEECGQVIL 912 (1287)
Q Consensus 833 ~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~ 912 (1287)
++|+|+. +.+.......+.++++|+.|++++ |.+...-+..+.-.++|+.++++.|.+..--+
T Consensus 272 e~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~--------------- 334 (873)
T KOG4194|consen 272 EHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDE--------------- 334 (873)
T ss_pred ceeeccc-chhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCCh---------------
Confidence 6666665 445444444455666666666666 55553334555556666666666665443222
Q ss_pred hhhcccCccceeeeccccccccchhhhhccCCCccceEeecccccccccccc-ccccccccccceecccccccccccccc
Q 000782 913 ESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQF-GLLRNSSLRRLAIWKCSISLLWPEEGH 991 (1287)
Q Consensus 913 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~ 991 (1287)
..|..+..|+.|+|++| .++.+..+.|.++++|++|++.+|.....+.+.. .+.++++|+.|++.+|++..++...|.
T Consensus 335 ~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs 413 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS 413 (873)
T ss_pred hHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhc
Confidence 56777788888888887 7777777788888888888888887766554432 344678888888888888777777777
Q ss_pred cCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCc
Q 000782 992 ALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAA 1034 (1287)
Q Consensus 992 ~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~ 1034 (1287)
.+. .|+.|+|.+|.+.+.-|.+|..+ .|++|.+..-.++.+
T Consensus 414 gl~-~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 414 GLE-ALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred cCc-ccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence 776 78888888888777777778777 787777766554443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.7e-30 Score=269.75 Aligned_cols=106 Identities=34% Similarity=0.531 Sum_probs=97.3
Q ss_pred hHHHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCC
Q 000782 566 THDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFN 645 (1287)
Q Consensus 566 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~ 645 (1287)
...-+.++..|.||++++|.+..+|.+++.+..++.|+.++|+++++|+.++.+.+|..|+.++|. ..++|++++.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhh
Confidence 334467899999999999999999999999999999999999999999999999999999999996 7788889999999
Q ss_pred ceEEEecCCccccCCcCCCCCCCCCcc
Q 000782 646 LRFLDIRGCNLQQLPPHMGGLKNLRTL 672 (1287)
Q Consensus 646 L~~L~l~~n~l~~lp~~i~~L~~L~~L 672 (1287)
|..|+..+|+++.+|.+++.+.+|..|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHh
Confidence 999999999999999999888777766
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=6e-29 Score=285.34 Aligned_cols=469 Identities=28% Similarity=0.258 Sum_probs=287.3
Q ss_pred HHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCce
Q 000782 568 DLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLR 647 (1287)
Q Consensus 568 ~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 647 (1287)
++..+.-.|++||+++|.+..+|..+..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+| ....+|.++..+++|+
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQ 117 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccc
Confidence 344444449999999999999999999999999999999999999999999999999999988 5899999999999999
Q ss_pred EEEecCCccccCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCCCCCCCCeEE
Q 000782 648 FLDIRGCNLQQLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLE 727 (1287)
Q Consensus 648 ~L~l~~n~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 727 (1287)
+|++++|.+..+|..+..++.+..+....+.. +..++... ++.++
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~~------------------------------ik~~~ 162 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEK-----IQRLGQTS------------------------------IKKLD 162 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchh-----hhhhcccc------------------------------chhhh
Confidence 99999999999999988888877763322200 00000000 11111
Q ss_pred EEecCCCCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeE-EEEecCCCCCCCCCCCCcccccceeec
Q 000782 728 LQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVF-LSLINCRNCTYLPPLGQLPSLKNLIIE 806 (1287)
Q Consensus 728 l~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~-L~L~~~~~~~~l~~l~~l~~L~~L~L~ 806 (1287)
+..+ . .+..++.. ..+++. |+|.+|.+. .-.+..+++|+.|...
T Consensus 163 l~~n------------------------~----l~~~~~~~-----i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~ 207 (1081)
T KOG0618|consen 163 LRLN------------------------V----LGGSFLID-----IYNLTHQLDLRYNEME--VLDLSNLANLEVLHCE 207 (1081)
T ss_pred hhhh------------------------h----cccchhcc-----hhhhheeeecccchhh--hhhhhhccchhhhhhh
Confidence 1110 0 00111111 223444 777777765 3346677788888887
Q ss_pred cCcceeEeCCccccCCccccccccccceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCcCEEEEcc
Q 000782 807 GMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEILN 886 (1287)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~ 886 (1287)
.|.+.... ..-++|+.|+...++-.+.. .-..-.+|+.+++++ ++++ .+|.++..+.+|+.++
T Consensus 208 rn~ls~l~------------~~g~~l~~L~a~~n~l~~~~---~~p~p~nl~~~dis~-n~l~-~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 208 RNQLSELE------------ISGPSLTALYADHNPLTTLD---VHPVPLNLQYLDISH-NNLS-NLPEWIGACANLEALN 270 (1081)
T ss_pred hcccceEE------------ecCcchheeeeccCcceeec---cccccccceeeecch-hhhh-cchHHHHhcccceEec
Confidence 77765432 12456666666664432110 012223677777777 5666 5666555555555555
Q ss_pred CCCccccCCCCccceeeeeccchhhhhhhcccCccceeeeccccccccchhhhhccCCCccceEeecccccccccccccc
Q 000782 887 CRELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGL 966 (1287)
Q Consensus 887 ~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 966 (1287)
..+|.+. .+| ..+....+|+.|.+..| .+..+++. .
T Consensus 271 ~n~N~l~-~lp---------------~ri~~~~~L~~l~~~~n-el~yip~~---------------------------l 306 (1081)
T KOG0618|consen 271 ANHNRLV-ALP---------------LRISRITSLVSLSAAYN-ELEYIPPF---------------------------L 306 (1081)
T ss_pred ccchhHH-hhH---------------HHHhhhhhHHHHHhhhh-hhhhCCCc---------------------------c
Confidence 5555431 111 23333333333333333 11111110 1
Q ss_pred ccccccccceecccccccccccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccC-CccCcCCcc
Q 000782 967 LRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP-EIDASSSLR 1045 (1287)
Q Consensus 967 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~ 1045 (1287)
.++..|++|++..|.+..++...+......| +.|+.+.|++..... .-...+.|+
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l------------------------~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASL------------------------NTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHH------------------------HHHhhhhccccccccccchhhHHHH
Confidence 1244555555555555444433222222223 333333333322111 122345666
Q ss_pred eEEeccCccccccCCCcccCCCCcccEEEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecC
Q 000782 1046 YLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISG 1125 (1287)
Q Consensus 1046 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~ 1125 (1287)
.|++.+|.++...-+.+. .+.+|+.|++++| .+..+|+..+.+++.|++|+|||
T Consensus 363 ~LylanN~Ltd~c~p~l~-------------------------~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLV-------------------------NFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHHhcCcccccchhhhc-------------------------cccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc
Confidence 777777765543322222 2236777777777 45567777778888888888888
Q ss_pred ccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCCCCCC-CCcceEE
Q 000782 1126 CSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLP-PNLKSLS 1204 (1287)
Q Consensus 1126 n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~-~~L~~L~ 1204 (1287)
|.++.+|... ..++.|+.|...+|... ..| .+..++.|+.+|+|.|++....-....+ ++|++||
T Consensus 417 NkL~~Lp~tv------------a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 417 NKLTTLPDTV------------ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred chhhhhhHHH------------HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 8888777322 23566777766555444 556 7788999999999999988665544455 8999999
Q ss_pred EecCCCCCcCcccCCCCCCcCeEeeccC
Q 000782 1205 ISDCENLVTLPNQMQSMTSLQDLTISNC 1232 (1287)
Q Consensus 1205 Ls~n~~~~~~~~~l~~l~~L~~L~l~~n 1232 (1287)
+++|.-....-..|..+.++...++.-+
T Consensus 483 lSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 483 LSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccCCcccccchhhhHHhhhhhheecccC
Confidence 9999865544456666777777777655
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.4e-25 Score=244.86 Aligned_cols=365 Identities=21% Similarity=0.248 Sum_probs=218.6
Q ss_pred CCcccEEEecCCCCc--ccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEE
Q 000782 573 FSRLRVLSLSHYEIV--ELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLD 650 (1287)
Q Consensus 573 ~~~Lr~L~L~~~~i~--~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 650 (1287)
++..|-.|+++|.++ .+|..+..+.++++|.|..+.+..+|+.++.|.+|++|.+++|+ +..+-..+..|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHh
Confidence 455677788888876 67888888888888888888888888888888888888888886 445556678888888888
Q ss_pred ecCCccc--cCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCCCCCCCCeEEE
Q 000782 651 IRGCNLQ--QLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLEL 728 (1287)
Q Consensus 651 l~~n~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 728 (1287)
+++|++. .+|+.|.+|..|.+|++..+. +..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNq------------------------L~E----------------------- 117 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQ------------------------LRE----------------------- 117 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhh------------------------hhh-----------------------
Confidence 8888765 788888888888877443321 111
Q ss_pred EecCCCCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCCCcccccceeeccC
Q 000782 729 QWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPPLGQLPSLKNLIIEGM 808 (1287)
Q Consensus 729 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 808 (1287)
+...+....++-.|+++++.+..+|..++. +++.|-.|+|++|++....|....|.+|+.|.|++|
T Consensus 118 -------------vP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 118 -------------VPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred -------------cchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 111122223445666667777778876653 577788899999988655555888999999999998
Q ss_pred cceeEeCCccccCCccccccccccceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCcCEEEEccCC
Q 000782 809 DAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSLKTLEILNCR 888 (1287)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~~~ 888 (1287)
++...--. .+.++.+|++|.+++...--.-+|.++..+.+|..++++. |++. .+|..+-++.+|..++++
T Consensus 184 PL~hfQLr--------QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 184 PLNHFQLR--------QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhHHHHh--------cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCC-cchHHHhhhhhhheeccC
Confidence 76432111 1233445555555554333223444555666666677665 5665 566666666666666666
Q ss_pred CccccCCCCccceeeeeccchhhhhhhcccCccceeeeccccccccchhhhhccCCCccceEeecccccccccccccccc
Q 000782 889 ELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLR 968 (1287)
Q Consensus 889 ~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 968 (1287)
+|++... + -......+|++|+++.| .++.+|... . .
T Consensus 254 ~N~iteL-------~---------~~~~~W~~lEtLNlSrN-QLt~LP~av-c--------------------------K 289 (1255)
T KOG0444|consen 254 GNKITEL-------N---------MTEGEWENLETLNLSRN-QLTVLPDAV-C--------------------------K 289 (1255)
T ss_pred cCceeee-------e---------ccHHHHhhhhhhccccc-hhccchHHH-h--------------------------h
Confidence 6654310 0 11222345555666655 444444322 2 3
Q ss_pred ccccccceecccccc-cccccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceE
Q 000782 969 NSSLRRLAIWKCSIS-LLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYL 1047 (1287)
Q Consensus 969 ~~~L~~L~l~~n~~~-~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L 1047 (1287)
+++|+.|++.+|.++ .-.|+.+..+. .|+.+..++| .+..+|++++.|..|+.|.|+.|.+.+....+-.++.|+.|
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~-~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLI-QLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhh-hhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence 344444444444432 11122233222 3444444433 34445555555555555555555554422244445555555
Q ss_pred EeccCccc
Q 000782 1048 QIQQCEAL 1055 (1287)
Q Consensus 1048 ~ls~n~~~ 1055 (1287)
|+.+|+-+
T Consensus 368 DlreNpnL 375 (1255)
T KOG0444|consen 368 DLRENPNL 375 (1255)
T ss_pred eccCCcCc
Confidence 55555443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.3e-24 Score=235.45 Aligned_cols=355 Identities=21% Similarity=0.282 Sum_probs=189.5
Q ss_pred cCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCCCcccccceeeccCcceeEeCCccccCCccccccccccceeeccC
Q 000782 760 YSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPPLGQLPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKD 839 (1287)
Q Consensus 760 ~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 839 (1287)
+.+..+|..+. .+++++.|.|...++......++.+.+|++|.+.+|+++...+
T Consensus 19 Fsg~~FP~~v~--qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG------------------------ 72 (1255)
T KOG0444|consen 19 FSGDRFPHDVE--QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG------------------------ 72 (1255)
T ss_pred CCCCcCchhHH--HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh------------------------
Confidence 44556666554 3677777777777765544447777777777777777654332
Q ss_pred CCCCCcccCCCCCCCCccceEeecCCCCCcc-cCCCCCCCcCEEEEccCCCccccCCCCccceeeeeccchhhhhhhccc
Q 000782 840 LPVWEEWISPDVGEFPHLHELCIENCPKFSK-EIPRSLVSLKTLEILNCRELSWIPCLPQIQNLILEECGQVILESIVDL 918 (1287)
Q Consensus 840 ~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~p~~l~~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l 918 (1287)
++..+|.|+.+.+.. |+++. -+|..+-.|+.|+++++++|++... | ..+..-
T Consensus 73 ----------ELs~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P---------------~~LE~A 125 (1255)
T KOG0444|consen 73 ----------ELSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHNQLREV-P---------------TNLEYA 125 (1255)
T ss_pred ----------hhccchhhHHHhhhc-cccccCCCCchhcccccceeeecchhhhhhc-c---------------hhhhhh
Confidence 234455555555555 44432 3555566666666666666654322 1 344455
Q ss_pred CccceeeeccccccccchhhhhccCCCccceEeeccccccccccccccccccccccceecccccccccccccccCcCCCc
Q 000782 919 TSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLE 998 (1287)
Q Consensus 919 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~ 998 (1287)
.++-.|+|++| .+..+|...|.+++.|-.|++++|+.-.. |.+ ...+..|++|++++|.+...-....-.+ ++|+
T Consensus 126 Kn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~L-PPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~ 200 (1255)
T KOG0444|consen 126 KNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEML-PPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLS 200 (1255)
T ss_pred cCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhc-CHH--HHHHhhhhhhhcCCChhhHHHHhcCccc-hhhh
Confidence 56666666666 66666666666555555555555433221 111 1133444555555554432221111111 2444
Q ss_pred EEEeccccC-cCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcC
Q 000782 999 CLEIGHCDN-LHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDG 1077 (1287)
Q Consensus 999 ~L~l~~~~~-~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~ 1077 (1287)
.|.+++... +..+|.++..+.+|..+|+|.|.+......+-.+++|+.|++|+|+++..... .
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~--------------- 264 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-E--------------- 264 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc-H---------------
Confidence 444444332 22355555555556666665555433222444455555555555544321100 0
Q ss_pred CCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeE
Q 000782 1078 CSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLE 1157 (1287)
Q Consensus 1078 c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~ 1157 (1287)
+.+ .+|++|++|.| .++.+|..+ +.+++|+.|++.+|+++
T Consensus 265 ---------~~W-~~lEtLNlSrN-QLt~LP~av-cKL~kL~kLy~n~NkL~---------------------------- 304 (1255)
T KOG0444|consen 265 ---------GEW-ENLETLNLSRN-QLTVLPDAV-CKLTKLTKLYANNNKLT---------------------------- 304 (1255)
T ss_pred ---------HHH-hhhhhhccccc-hhccchHHH-hhhHHHHHHHhccCccc----------------------------
Confidence 000 14555555555 233344322 44555555555555332
Q ss_pred EecCCCCcccccccCCCCCcceEEeccCCCccccCCC-CCCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccCCCCc
Q 000782 1158 ICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG-GLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLE 1236 (1287)
Q Consensus 1158 l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~l~ 1236 (1287)
...+|+.++.+.+|+.+..++|.+. ..|+. ..+..|+.|.|++|.+. .+|+++.-++.|+.||+..|+.+.
T Consensus 305 ------FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 305 ------FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ------ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 1256677777777777777776654 44443 66777777777777655 466777777777777777777753
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1e-20 Score=248.03 Aligned_cols=347 Identities=28% Similarity=0.399 Sum_probs=189.9
Q ss_pred hhhcccCccceeeeccccc------cccchhhhhccCCCccceEeeccccccccccccccccccccccceeccccccccc
Q 000782 913 ESIVDLTSLVKLRLYKILS------LRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLW 986 (1287)
Q Consensus 913 ~~~~~l~~L~~L~l~~n~~------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 986 (1287)
..|.++++|+.|.+..+.. ...++.++..-..+|+.|.+.+++... +|..+ ...+|+.|++.+|.+..++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f---~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF---RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC---CccCCcEEECcCccccccc
Confidence 4567778888877765421 111222222222345666665553322 22222 2345555555555554433
Q ss_pred ccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccC-CccCcCCcceEEeccCccccccCCCcccC
Q 000782 987 PEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP-EIDASSSLRYLQIQQCEALRSLPAGLTCN 1065 (1287)
Q Consensus 987 ~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~ls~n~~~~~~~~~~~~~ 1065 (1287)
.. +..++ +|+.|++++|..++.+|. +..+++|+.|++++|.....+| .+..+++|+.|++++|..++.+|...
T Consensus 628 ~~-~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--- 701 (1153)
T PLN03210 628 DG-VHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--- 701 (1153)
T ss_pred cc-cccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---
Confidence 21 22222 555555555555555543 4555555555555555554444 44555555555555555555555433
Q ss_pred CCCcccEEEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCC
Q 000782 1066 KNLSLEFFELDGCSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSAS 1145 (1287)
Q Consensus 1066 ~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~ 1145 (1287)
...+|+.|++++|..+..+|. .+.+|+.|++++|. +..+|..+ .+++|++|++.++....++.. +..+...
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~----~~~l~~~ 772 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSNL--RLENLDELILCEMKSEKLWER----VQPLTPL 772 (1153)
T ss_pred CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-cccccccc--cccccccccccccchhhcccc----ccccchh
Confidence 122555555555555544442 22355555555553 23344322 344444444444322211100 0001111
Q ss_pred CCCCCCCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCCCcCcccCCCCCCcC
Q 000782 1146 SPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLVTLPNQMQSMTSLQ 1225 (1287)
Q Consensus 1146 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~ 1225 (1287)
....+++|+.|++++|.....+|..+.++++|+.|+|++|+..+.+|....+++|+.|+|++|.....+|.. .++|+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~ 849 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNIS 849 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccC
Confidence 122346788888888887777888888888888888888877777776666778888888887776666543 25677
Q ss_pred eEeeccCCCCcCCCCC-CCCCCcceeeeccCcCccCCCCCCCCccCccceEEEcCcCCC
Q 000782 1226 DLTISNCIHLESFPEG-GLPPNLKSLCIIECINLEAPSKWDLHKLRSIENFLISNASSS 1283 (1287)
Q Consensus 1226 ~L~l~~n~~l~~lp~~-~~~~~L~~L~i~~c~~L~~~~~~~l~~~~~L~~l~i~~n~~~ 1283 (1287)
.|++++|.+ +.+|.. ...++|+.|++.+|++|+.++.. ..++++|+.+++++|.-.
T Consensus 850 ~L~Ls~n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 850 DLNLSRTGI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred EeECCCCCC-ccChHHHhcCCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCCccc
Confidence 777777655 556643 23467777777777777766443 456677777777777543
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=8.5e-20 Score=190.79 Aligned_cols=275 Identities=20% Similarity=0.198 Sum_probs=169.7
Q ss_pred hhchHHHhcCCCcccEEEecCCCCccc-CccccCCCccceEecCC-CCCcccc-hhhhcccCccEEeecCcccccccCCC
Q 000782 563 KKVTHDLLKNFSRLRVLSLSHYEIVEL-PDLIGDLKHLRYLDLSN-TSIKSLP-ESIAALYNLQTLILYSCRYLIQLPKH 639 (1287)
Q Consensus 563 ~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~~~~l~~Lr~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~ 639 (1287)
..+++.+|+.+++||+|||++|+|+.| |+.|.++..|-.|-+.+ |+|+.+| ..|++|..|+-|.+.-|++.....+.
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 567889999999999999999999976 78999999877776655 9999998 57899999999999999888888888
Q ss_pred CCCCCCceEEEecCCccccCCcC-CCCCCCCCccCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCC
Q 000782 640 MGDLFNLRFLDIRGCNLQQLPPH-MGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLK 718 (1287)
Q Consensus 640 ~~~L~~L~~L~l~~n~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 718 (1287)
|..|++|..|.+.+|.++.++.+ +..+.+++++.+..+.....+.+..+..-... ... ...
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~------~~i------------ets 221 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM------NPI------------ETS 221 (498)
T ss_pred HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh------chh------------hcc
Confidence 99999999999999999999884 88999999886655543333433333221110 000 000
Q ss_pred CCCCCCeEEEEecCCCCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCC--CCC
Q 000782 719 DKKYLNKLELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPP--LGQ 796 (1287)
Q Consensus 719 ~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~ 796 (1287)
+........+.+..... ......... ...+..=..+.|.....-|. |.+
T Consensus 222 garc~~p~rl~~~Ri~q-~~a~kf~c~----------------------------~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQ-EDARKFLCS----------------------------LESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred cceecchHHHHHHHhcc-cchhhhhhh----------------------------HHhHHHhhccccCcCCcChHHHHhh
Confidence 00000000000000000 000000000 00110001112222222332 666
Q ss_pred cccccceeeccCcceeEeCCccccCCccccccccccceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCC
Q 000782 797 LPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSL 876 (1287)
Q Consensus 797 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l 876 (1287)
||+|+.|+|++|.+..+....| .+...+++|.|.. +.++.+....+..+..|+.|++.+ |+++...|..|
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aF--------e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF 342 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAF--------EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAF 342 (498)
T ss_pred cccceEeccCCCccchhhhhhh--------cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccc
Confidence 6666666666666655444443 2345566666655 455554444566677777778877 67776667777
Q ss_pred CCcCEEEEccCCCccccC
Q 000782 877 VSLKTLEILNCRELSWIP 894 (1287)
Q Consensus 877 ~~L~~L~~l~~~~~~~~~ 894 (1287)
..+..|..+++-.|.+..
T Consensus 343 ~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cccceeeeeehccCcccC
Confidence 777777777776666543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=9.1e-19 Score=183.19 Aligned_cols=416 Identities=15% Similarity=0.079 Sum_probs=208.0
Q ss_pred CeeEEEEecCCCCCCCCC-CCCcccccceeeccCcceeEeCCccccCCccccccccccceeeccCCCCCCcccCCCCCCC
Q 000782 776 NLVFLSLINCRNCTYLPP-LGQLPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEF 854 (1287)
Q Consensus 776 ~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 854 (1287)
.-+.+.|..|++....+. |+.+++|+.|+|+.|.+..+.+..| .++++|-.|.+.+.++++++....++.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--------~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF--------KGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh--------hhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 445556666655544443 5666666666666665554444443 2355555555555555555544445555
Q ss_pred CccceEeecCCCCCcccCCCCCCCcCEEEEccCCCccccCCCCccceeeeeccchhhhhhhcccCccceeeecccccccc
Q 000782 855 PHLHELCIENCPKFSKEIPRSLVSLKTLEILNCRELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRC 934 (1287)
Q Consensus 855 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 934 (1287)
..|+.|.+.- +++.......|..|+++..+.+..|.+-.... ..+..+.+++.+.+..|+.+..
T Consensus 140 ~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~---------------~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 140 SSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICK---------------GTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred HHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhcc---------------ccccchhccchHhhhcCccccc
Confidence 5555555554 24432222344444444444444433211110 1333334444444444332211
Q ss_pred ch-----------hhhhccCCCccceEeeccccccccccccccccccccccceeccccccccccc-ccccCcCCCcEEEe
Q 000782 935 LA-----------SEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPE-EGHALPDLLECLEI 1002 (1287)
Q Consensus 935 ~~-----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~~L~~L~l 1002 (1287)
.. +..++++.......+.+.+.-......|... ..++..-..+.+...+..|. .|..++ +|++|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnl 281 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNL 281 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcc-cceEecc
Confidence 10 0011111111111111111111111111100 11222222233333333332 344444 7788888
Q ss_pred ccccCcCCCCcccCCCCCCCeEEEecCCCCCccC-CccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCCC
Q 000782 1003 GHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP-EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSL 1081 (1287)
Q Consensus 1003 ~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 1081 (1287)
++|.+...-+.+|.++..+++|.|..|++...-. .|.++..|+.|++++|+++...|..|.... +|..|++-+++..
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~--~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF--SLSTLNLLSNPFN 359 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc--eeeeeehccCccc
Confidence 8877777777778888888888888887755433 677778888888888888777777766544 4555555444322
Q ss_pred CcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCcc-ccCCCCCCCCCcceeEEec
Q 000782 1082 ISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSS-LSASSPKSSSRLKMLEICN 1160 (1287)
Q Consensus 1082 ~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~-l~~~~~~~~~~L~~L~l~~ 1160 (1287)
-+--...+... +......+. |. .+....++.+.++...+.++..+.-..... -+...+..++.+....=..
T Consensus 360 CnC~l~wl~~W-----lr~~~~~~~-~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcS 431 (498)
T KOG4237|consen 360 CNCRLAWLGEW-----LRKKSVVGN-PR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCS 431 (498)
T ss_pred CccchHHHHHH-----HhhCCCCCC-CC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhc
Confidence 21100000000 111111111 11 123334666666666555443221111111 1223344555666655556
Q ss_pred CCCCcccccccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccC
Q 000782 1161 CMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNC 1232 (1287)
Q Consensus 1161 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n 1232 (1287)
+..++.+|..+. ..-.+|++.+|.+. .+|.. .+.+| .+++++|++...--..|.++++|.+|-|++|
T Consensus 432 nk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~-~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 432 NKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE-LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhhcCCCCC--chhHHHhcccchhc-ccCHH-HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 666667776663 35678888888876 33332 66777 8899998887766667888899999988876
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=7.8e-16 Score=185.78 Aligned_cols=240 Identities=29% Similarity=0.254 Sum_probs=136.7
Q ss_pred CCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceEEeccCccccccCCCcccCCCCcccEEEE
Q 000782 996 LLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFEL 1075 (1287)
Q Consensus 996 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l 1075 (1287)
+|+.|++.+|.+. .+|. ..++|++|++++|++.. +|. .+++|+.|++++|.+.. +|..+ ..|..|++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~--lp~sL~~L~Ls~N~L~~-Lp~lp-----~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNPLTH-LPALP-----SGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC--cccccceeeccCCchhh-hhhch-----hhcCEEEC
Confidence 4455555544322 2332 13455555555554442 232 13455555555554332 22211 13444455
Q ss_pred cCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcce
Q 000782 1076 DGCSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKM 1155 (1287)
Q Consensus 1076 ~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~ 1155 (1287)
++|. +..+|. .+++|+.|++++|.. ..+|. ...+|+.|++++|+|+.+|. ...+|+.
T Consensus 290 s~N~-Lt~LP~--~p~~L~~LdLS~N~L-~~Lp~----lp~~L~~L~Ls~N~L~~LP~---------------lp~~Lq~ 346 (788)
T PRK15387 290 FGNQ-LTSLPV--LPPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSLPT---------------LPSGLQE 346 (788)
T ss_pred cCCc-cccccc--cccccceeECCCCcc-ccCCC----CcccccccccccCccccccc---------------cccccce
Confidence 4442 333332 234677777777743 33443 12346777777777776552 1246777
Q ss_pred eEEecCCCCcccccccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccCCCC
Q 000782 1156 LEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHL 1235 (1287)
Q Consensus 1156 L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~l 1235 (1287)
|++++|... .+|.. ..+|+.|++++|.+. .+|. .+.+|+.|+|++|.+.+ +|.. .++|+.|++++|.+
T Consensus 347 LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~--l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L- 414 (788)
T PRK15387 347 LSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL- 414 (788)
T ss_pred EecCCCccC-CCCCC---Ccccceehhhccccc-cCcc--cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC-
Confidence 777776544 45532 346777788877766 3443 34578888888877654 5533 25788888888876
Q ss_pred cCCCCCCCCCCcceeeeccCcCccCCCCCCCCccCccceEEEcCcCCCCCCC
Q 000782 1236 ESFPEGGLPPNLKSLCIIECINLEAPSKWDLHKLRSIENFLISNASSSHHQP 1287 (1287)
Q Consensus 1236 ~~lp~~~~~~~L~~L~i~~c~~L~~~~~~~l~~~~~L~~l~i~~n~~~~~~~ 1287 (1287)
+.+|. .|.+|+.|++.+ +.++.+++. +.++++|..+++++|++++.+|
T Consensus 415 ssIP~--l~~~L~~L~Ls~-NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 415 TSLPM--LPSGLLSLSVYR-NQLTRLPES-LIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCCc--chhhhhhhhhcc-CcccccChH-HhhccCCCeEECCCCCCCchHH
Confidence 55664 456777777654 446666543 5678888888888888887654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=7.1e-16 Score=186.12 Aligned_cols=260 Identities=25% Similarity=0.182 Sum_probs=173.3
Q ss_pred cceeeeccccccccchhhhhccCCCccceEeeccccccccccccccccccccccceecccccccccccccccCcCCCcEE
Q 000782 921 LVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECL 1000 (1287)
Q Consensus 921 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L 1000 (1287)
-..|+++++ .++.+|..+. ++|+.|.+.+|.... ++. ..++|++|++++|.++.++. ++++|+.|
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~---~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~-----lp~sL~~L 267 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 267 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh---cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC-----ccccccee
Confidence 445555555 4445554432 256666666654332 221 13677778888777776542 34577888
Q ss_pred EeccccCcCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCC
Q 000782 1001 EIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSS 1080 (1287)
Q Consensus 1001 ~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 1080 (1287)
++++|.+ ..+|.. ..+|+.|++++|++.. +|. .+++|+.|++++|.+.+ +|... ..|..|.+++|.
T Consensus 268 ~Ls~N~L-~~Lp~l---p~~L~~L~Ls~N~Lt~-LP~--~p~~L~~LdLS~N~L~~-Lp~lp-----~~L~~L~Ls~N~- 333 (788)
T PRK15387 268 SIFSNPL-THLPAL---PSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLAS-LPALP-----SELCKLWAYNNQ- 333 (788)
T ss_pred eccCCch-hhhhhc---hhhcCEEECcCCcccc-ccc--cccccceeECCCCcccc-CCCCc-----ccccccccccCc-
Confidence 8887753 344442 2467778888887654 443 24678888888887664 33321 145566666653
Q ss_pred CCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEec
Q 000782 1081 LISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICN 1160 (1287)
Q Consensus 1081 l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~ 1160 (1287)
+..+|. .+.+|+.|++++|.. ..+|.. .++|+.|++++|+|+.+|. ...+|+.|++++
T Consensus 334 L~~LP~--lp~~Lq~LdLS~N~L-s~LP~l----p~~L~~L~Ls~N~L~~LP~---------------l~~~L~~LdLs~ 391 (788)
T PRK15387 334 LTSLPT--LPSGLQELSVSDNQL-ASLPTL----PSELYKLWAYNNRLTSLPA---------------LPSGLKELIVSG 391 (788)
T ss_pred cccccc--cccccceEecCCCcc-CCCCCC----CcccceehhhccccccCcc---------------cccccceEEecC
Confidence 334442 445899999999854 456642 3568889999999888763 135689999998
Q ss_pred CCCCcccccccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccCCCCcCCC
Q 000782 1161 CMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFP 1239 (1287)
Q Consensus 1161 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~l~~lp 1239 (1287)
|... .+|.. .++|+.|++++|.+.. +|. .+.+|+.|++++|.+. .+|..+.++++|+.|+|++|++....|
T Consensus 392 N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~--l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 392 NRLT-SLPVL---PSELKELMVSGNRLTS-LPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred Cccc-CCCCc---ccCCCEEEccCCcCCC-CCc--chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 8655 46643 3579999999999874 554 3568999999998876 678889999999999999999965433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=9e-15 Score=178.30 Aligned_cols=225 Identities=22% Similarity=0.322 Sum_probs=120.4
Q ss_pred cccceecccccccccccccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceEEecc
Q 000782 972 LRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQ 1051 (1287)
Q Consensus 972 L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ls~ 1051 (1287)
...|+++++.++.++. .+++.|+.|++++|.+. .+|..+. ++|+.|++++|.+.. +|. ...++|+.|++++
T Consensus 180 ~~~L~L~~~~LtsLP~----~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~-~l~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPA----CIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPA-TLPDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCc----ccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CCh-hhhccccEEECcC
Confidence 4455555555554432 13445666777666433 4454432 467777777766543 342 1234677777777
Q ss_pred CccccccCCCcccCCCCcccEEEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcc
Q 000782 1052 CEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSF 1131 (1287)
Q Consensus 1052 n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 1131 (1287)
|.+. .+|..+. .+|+.|++++| .+..+|.. .+.+|+.|++++|. +..+|..+ .++|+.|++++|.++.+
T Consensus 251 N~L~-~LP~~l~----s~L~~L~Ls~N-~L~~LP~~-l~~sL~~L~Ls~N~-Lt~LP~~l---p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 251 NRIT-ELPERLP----SALQSLDLFHN-KISCLPEN-LPEELRYLSVYDNS-IRTLPAHL---PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CccC-cCChhHh----CCCCEEECcCC-ccCccccc-cCCCCcEEECCCCc-cccCcccc---hhhHHHHHhcCCccccC
Confidence 7654 3443332 14455555433 23333322 23367777777763 33455432 23567777777776665
Q ss_pred cccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCC
Q 000782 1132 PVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENL 1211 (1287)
Q Consensus 1132 ~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~ 1211 (1287)
|... .++|+.|++++|... .+|..+. ++|+.|++++|++. .+|. ..+++|+.|+|++|++.
T Consensus 320 P~~l--------------~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~-~lp~~L~~LdLs~N~Lt 380 (754)
T PRK15370 320 PETL--------------PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPE-TLPPTITTLDVSRNALT 380 (754)
T ss_pred Cccc--------------cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCCh-hhcCCcCEEECCCCcCC
Confidence 4211 245666677666543 3554442 56777777777665 3333 23356777777776655
Q ss_pred CcCcccCCCCCCcCeEeeccCCCCcCCC
Q 000782 1212 VTLPNQMQSMTSLQDLTISNCIHLESFP 1239 (1287)
Q Consensus 1212 ~~~~~~l~~l~~L~~L~l~~n~~l~~lp 1239 (1287)
.+|..+. .+|+.|++++|.+ +.+|
T Consensus 381 -~LP~~l~--~sL~~LdLs~N~L-~~LP 404 (754)
T PRK15370 381 -NLPENLP--AALQIMQASRNNL-VRLP 404 (754)
T ss_pred -CCCHhHH--HHHHHHhhccCCc-ccCc
Confidence 3444432 3566777777665 3555
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=3.8e-14 Score=172.87 Aligned_cols=244 Identities=22% Similarity=0.303 Sum_probs=122.8
Q ss_pred cceeeeccccccccchhhhhccCCCccceEeeccccccccccccccccccccccceecccccccccccccccCcCCCcEE
Q 000782 921 LVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECL 1000 (1287)
Q Consensus 921 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L 1000 (1287)
...|+++++ .++.+|... .++|+.|++++|.... ++..+ .++|++|++++|.+..++. .++.+|+.|
T Consensus 180 ~~~L~L~~~-~LtsLP~~I---p~~L~~L~Ls~N~Lts-LP~~l----~~nL~~L~Ls~N~LtsLP~----~l~~~L~~L 246 (754)
T PRK15370 180 KTELRLKIL-GLTTIPACI---PEQITTLILDNNELKS-LPENL----QGNIKTLYANSNQLTSIPA----TLPDTIQEM 246 (754)
T ss_pred ceEEEeCCC-CcCcCCccc---ccCCcEEEecCCCCCc-CChhh----ccCCCEEECCCCccccCCh----hhhccccEE
Confidence 445555544 333443322 1245555555553332 22111 1355566666655554432 123355666
Q ss_pred EeccccCcCCCCcccCCCCCCCeEEEecCCCCCccCCccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCC
Q 000782 1001 EIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSS 1080 (1287)
Q Consensus 1001 ~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 1080 (1287)
++++|.+. .+|..+. .+|+.|++++|++.. +|.. .+++|+.|++++|.+.. +|..
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~-l~~sL~~L~Ls~N~Lt~-LP~~------------------- 301 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPEN-LPEELRYLSVYDNSIRT-LPAH------------------- 301 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccc-cCCCCcEEECCCCcccc-Cccc-------------------
Confidence 66665433 3444332 356666666555542 3311 12456666666654432 2211
Q ss_pred CCcCCCCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEec
Q 000782 1081 LISFPDGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICN 1160 (1287)
Q Consensus 1081 l~~~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~ 1160 (1287)
.+.+|+.|++++|.. ..+|..+ .++|+.|++++|.++.+|.. .+++|+.|++++
T Consensus 302 --------lp~sL~~L~Ls~N~L-t~LP~~l---~~sL~~L~Ls~N~Lt~LP~~--------------l~~sL~~L~Ls~ 355 (754)
T PRK15370 302 --------LPSGITHLNVQSNSL-TALPETL---PPGLKTLEAGENALTSLPAS--------------LPPELQVLDVSK 355 (754)
T ss_pred --------chhhHHHHHhcCCcc-ccCCccc---cccceeccccCCccccCChh--------------hcCcccEEECCC
Confidence 123566666666633 2344433 24566666666666655421 124566666666
Q ss_pred CCCCcccccccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCCCcCcc----cCCCCCCcCeEeeccCCC
Q 000782 1161 CMDLISLPDDLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLVTLPN----QMQSMTSLQDLTISNCIH 1234 (1287)
Q Consensus 1161 ~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~----~l~~l~~L~~L~l~~n~~ 1234 (1287)
|... .+|..+ .++|+.|+|++|++.. +|.. ...+|+.|++++|++. .+|. .+..++++..|++.+|++
T Consensus 356 N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~-l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 356 NQIT-VLPETL--PPTITTLDVSRNALTN-LPEN-LPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCC-cCChhh--cCCcCEEECCCCcCCC-CCHh-HHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 6543 455444 2567777777776663 3321 2246777777777665 3333 333456677777777776
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=3e-12 Score=168.54 Aligned_cols=290 Identities=15% Similarity=0.181 Sum_probs=183.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 245 (1287)
.+|-|++-.+.+. .. ...+++.|+|++|.||||++.++.+. ++.++|+++... .+...+...++
T Consensus 15 ~~~~R~rl~~~l~----~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 15 NTVVRERLLAKLS----GA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred ccCcchHHHHHHh----cc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 5677775555443 22 35689999999999999999998852 226899999644 46666777777
Q ss_pred HHccCCCCC-------------CCChHHHHHHHHHHcC--CCeEEEEEeCCCCCChhhHh-HhcccCCCCCCCcEEEEEc
Q 000782 246 ESLGESCGH-------------ITQLEPLQSALKRKLT--LKRYLLVLDDLWGENYNEWE-VLQLPFRGGAHGSKIIVTT 309 (1287)
Q Consensus 246 ~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~~~~~l~~~~~gs~ilvTt 309 (1287)
..+...... ..+.......+...+. +.+++||+||+...+..... .+...+.....+.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 766421111 0122223333333332 68999999999665433333 3333333344567888999
Q ss_pred CchhhHh--Hhc-CcCeEEcc----CCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCC
Q 000782 310 RSENVAQ--IVG-TVPVFHLQ----ELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSK 382 (1287)
Q Consensus 310 R~~~v~~--~~~-~~~~~~l~----~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 382 (1287)
|...... ... ......+. +|+.+|+.++|....... -..+.+.+|.+.|+|.|+++..++..+...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9842111 111 12345555 999999999998755221 123557789999999999999998877544
Q ss_pred CC-HhHHHHHHcccccCCCC-CCCCchhHHHh-hhcCCCCChhhHhhhhcccCCCceechHHHHHHHHHcCccccCCCCC
Q 000782 383 SN-VDEWQHILNSEVWELPD-EKTGILPGLAL-SYHHLPSHLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNM 459 (1287)
Q Consensus 383 ~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 459 (1287)
.. .... . +.+.. ....+...+.- .++.||++.+..++..|+++ .++.+.+-.. ..
T Consensus 233 ~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------ 290 (903)
T PRK04841 233 NSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------ 290 (903)
T ss_pred CCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------
Confidence 22 1111 1 11111 11235554433 48899999999999999996 3443332211 11
Q ss_pred ChhhhHhHHHHHHhhCCccee-cCCCccccchhhHHHHHHHhhc
Q 000782 460 QNEDVGSHYFHDLLSRSLFQR-SSRNISRFIMHDLINDLAQFAA 502 (1287)
Q Consensus 460 ~~~~~~~~~l~~L~~~~li~~-~~~~~~~~~mH~lv~~~a~~~~ 502 (1287)
.+.+...+++|.+.+++.. .+.+...|+.|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2235788999999999753 3333457889999999998765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=4e-15 Score=137.57 Aligned_cols=100 Identities=38% Similarity=0.529 Sum_probs=81.4
Q ss_pred CCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEe
Q 000782 572 NFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDI 651 (1287)
Q Consensus 572 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l 651 (1287)
.+.++..|-|++|.++.+|..+..+.+|++|++++|+|+++|.+|+.|++|++|++.-|+ +..+|..|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 455667778888888888888888888888888888888888888888888888888775 7788888888888888888
Q ss_pred cCCccc--cCCcCCCCCCCCCcc
Q 000782 652 RGCNLQ--QLPPHMGGLKNLRTL 672 (1287)
Q Consensus 652 ~~n~l~--~lp~~i~~L~~L~~L 672 (1287)
.+|++. .+|..|..|+.|+.|
T Consensus 110 tynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred cccccccccCCcchhHHHHHHHH
Confidence 888766 677767666666665
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=4.8e-15 Score=137.00 Aligned_cols=168 Identities=26% Similarity=0.377 Sum_probs=129.6
Q ss_pred cccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecCCccccCCcCCCCCCCCCc
Q 000782 592 LIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRT 671 (1287)
Q Consensus 592 ~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l~~lp~~i~~L~~L~~ 671 (1287)
.+.++.+...|.||+|.++.+|..|..|.+|+.|++++|+ +..+|..++.|++|++|+++-|++..+|.+||.++.|+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4557788899999999999999999999999999999996 789999999999999999999999999999999999998
Q ss_pred cCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCCCCCCCCeEEEEecCCCCCCchHHHhccCCCCCC
Q 000782 672 LPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLELQWSSGHDGMIDEDVLEALQPHWN 751 (1287)
Q Consensus 672 L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~ 751 (1287)
|++..+ +++
T Consensus 107 ldltyn------------------------nl~----------------------------------------------- 115 (264)
T KOG0617|consen 107 LDLTYN------------------------NLN----------------------------------------------- 115 (264)
T ss_pred hhcccc------------------------ccc-----------------------------------------------
Confidence 843222 111
Q ss_pred CCeEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCCCcccccceeeccCcceeEeCCccccCCccccccccc
Q 000782 752 LKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPPLGQLPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQS 831 (1287)
Q Consensus 752 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~ 831 (1287)
...+|.-++ .++.|+.|+|++|.+.-..|..+++++|+.|.+..|.+.+
T Consensus 116 ----------e~~lpgnff--~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~------------------- 164 (264)
T KOG0617|consen 116 ----------ENSLPGNFF--YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS------------------- 164 (264)
T ss_pred ----------cccCCcchh--HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-------------------
Confidence 112333333 2667777788888775555558888888888888776542
Q ss_pred cceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCCCCCCCc
Q 000782 832 LEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSL 879 (1287)
Q Consensus 832 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 879 (1287)
.+.+++.+..|++|.+.+ |.++ .+|..+.++
T Consensus 165 ---------------lpkeig~lt~lrelhiqg-nrl~-vlppel~~l 195 (264)
T KOG0617|consen 165 ---------------LPKEIGDLTRLRELHIQG-NRLT-VLPPELANL 195 (264)
T ss_pred ---------------CcHHHHHHHHHHHHhccc-ceee-ecChhhhhh
Confidence 334467778888888888 7887 677655544
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=2.1e-10 Score=134.80 Aligned_cols=301 Identities=14% Similarity=0.100 Sum_probs=178.5
Q ss_pred CCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 164 VDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
.++.++||+++++++...+..... +.....+.|+|++|+|||++++.++++.......-..+++.+....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 455899999999999999854311 223456789999999999999999985322222234566777777778889999
Q ss_pred HHHHccCCC-C-CCCChHHHHHHHHHHcC--CCeEEEEEeCCCCCC----hhhHhHhcccCCCCCCCcE--EEEEcCchh
Q 000782 244 ILESLGESC-G-HITQLEPLQSALKRKLT--LKRYLLVLDDLWGEN----YNEWEVLQLPFRGGAHGSK--IIVTTRSEN 313 (1287)
Q Consensus 244 i~~~l~~~~-~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~~~~~l~~~~~gs~--ilvTtR~~~ 313 (1287)
+++++.... . ...+.++....+.+.+. +++.+||+|+++.-. ...+..+...+... .+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 999987522 1 22345666777777764 467899999996531 12223333222221 2333 566666544
Q ss_pred hHhHhc-------CcCeEEccCCChhhHHHHHHHHHcCCC--CCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh--c--
Q 000782 314 VAQIVG-------TVPVFHLQELSDNDCWSLFAQHAFSKL--NPEARPSLESIGKEIAKKCKGLPLAAKALGGLL--R-- 380 (1287)
Q Consensus 314 v~~~~~-------~~~~~~l~~L~~~~a~~lf~~~a~~~~--~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~-- 380 (1287)
+..... ....+.+++++.++..+++..++.... ..-.+..++.+++......|..+.|+.++-... +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 333221 124689999999999999998763221 111222333334433333566778877764322 1
Q ss_pred -CC--CCHhHHHHHHcccccCCCCCCCCchhHHHhhhcCCCCChhhHhhhhcccCC--CceechHHHHHH--HHHcCccc
Q 000782 381 -SK--SNVDEWQHILNSEVWELPDEKTGILPGLALSYHHLPSHLKPCFAYCAIFPK--GYEFEANDLVRL--WMAEGLMY 453 (1287)
Q Consensus 381 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~--~~~i~~~~li~~--w~a~g~i~ 453 (1287)
.. -+.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 2345555555432 1123345678999998877766653321 133555555432 22321110
Q ss_pred cCCCCCChhhhHhHHHHHHhhCCcceec
Q 000782 454 EPRRNMQNEDVGSHYFHDLLSRSLFQRS 481 (1287)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~L~~~~li~~~ 481 (1287)
. .........|+.+|...|+|...
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 0 11234567789999999998754
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=1e-13 Score=158.71 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=16.5
Q ss_pred CCcceEEEecCCCCC----cCcccCCCCCCcCeEeeccCCC
Q 000782 1198 PNLKSLSISDCENLV----TLPNQMQSMTSLQDLTISNCIH 1234 (1287)
Q Consensus 1198 ~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~l~~n~~ 1234 (1287)
..|+.|++++|.+.. .+...+..+++|+++++++|.+
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 445555555554431 1222333344555555555544
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.26 E-value=1.1e-09 Score=127.36 Aligned_cols=304 Identities=14% Similarity=0.084 Sum_probs=175.5
Q ss_pred cCCCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc-ccc---ceeEEEEecCCCCH
Q 000782 162 SLVDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN-DHF---ELKAWAFVSDEFDL 237 (1287)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~ 237 (1287)
.+.++.++||++++++|...+..... +.....+.|+|++|+|||++++.++++.... ... -..+|+.+....+.
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 34556899999999999999865311 2344678999999999999999999742110 111 24567787777778
Q ss_pred HHHHHHHHHHcc---CCCC-CCCChHHHHHHHHHHc--CCCeEEEEEeCCCCCC---hhhHhHhccc--CCCC-CCCcEE
Q 000782 238 VKVTKAILESLG---ESCG-HITQLEPLQSALKRKL--TLKRYLLVLDDLWGEN---YNEWEVLQLP--FRGG-AHGSKI 305 (1287)
Q Consensus 238 ~~~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---~~~~~~~~~~--l~~~-~~gs~i 305 (1287)
..++..|++++. .... ...+.++....+.+.+ .+++++||||+++.-. ......+... .... .....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 889999999884 2211 1223445555666665 3568999999995531 1111222221 1111 122344
Q ss_pred EEEcCchhhHhHhc-------CcCeEEccCCChhhHHHHHHHHHcCC-CCCCCCchhhHHHHHHHhhcCCchh-HHHHHH
Q 000782 306 IVTTRSENVAQIVG-------TVPVFHLQELSDNDCWSLFAQHAFSK-LNPEARPSLESIGKEIAKKCKGLPL-AAKALG 376 (1287)
Q Consensus 306 lvTtR~~~v~~~~~-------~~~~~~l~~L~~~~a~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 376 (1287)
|++|........+. ....+.+++++.++..+++..++... ......++..+...+++....|.|- |+.++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55554443322211 12468999999999999999887311 1111222333455567777778884 433332
Q ss_pred hhh--c--C---CCCHhHHHHHHcccccCCCCCCCCchhHHHhhhcCCCCChhhHhhhhcccC--CCceechHHHHHHHH
Q 000782 377 GLL--R--S---KSNVDEWQHILNSEVWELPDEKTGILPGLALSYHHLPSHLKPCFAYCAIFP--KGYEFEANDLVRLWM 447 (1287)
Q Consensus 377 ~~l--~--~---~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp--~~~~i~~~~li~~w~ 447 (1287)
... + . .-+.++...+.+.. -.....-++..||.+.|..+..++..- ++..+...++...+-
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 211 1 1 12334444433321 012334566789988887666655321 334466666665331
Q ss_pred --HcCccccCCCCCChhhhHhHHHHHHhhCCcceec
Q 000782 448 --AEGLMYEPRRNMQNEDVGSHYFHDLLSRSLFQRS 481 (1287)
Q Consensus 448 --a~g~i~~~~~~~~~~~~~~~~l~~L~~~~li~~~ 481 (1287)
++.+ . ...........++.+|...|+|+..
T Consensus 319 ~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 1 1112346778899999999999864
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=1.5e-09 Score=120.24 Aligned_cols=182 Identities=20% Similarity=0.184 Sum_probs=117.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHH----
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRK---- 268 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---- 268 (1287)
.+++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++.+.. ..........+.++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999984321 221 22333 33345677888999988876543 22223333344332
Q ss_pred -cCCCeEEEEEeCCCCCChhhHhHhcccCC---CCCCCcEEEEEcCchhhHhHhc----------CcCeEEccCCChhhH
Q 000782 269 -LTLKRYLLVLDDLWGENYNEWEVLQLPFR---GGAHGSKIIVTTRSENVAQIVG----------TVPVFHLQELSDNDC 334 (1287)
Q Consensus 269 -l~~k~~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~a 334 (1287)
..+++.++|+||+|..+...++.+..... .......|++|.... ....+. ....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 26788999999998876666666543221 112233456665532 221111 134688999999999
Q ss_pred HHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 335 WSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 335 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
.+++...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322111222345789999999999999999988776
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=1.5e-12 Score=148.97 Aligned_cols=257 Identities=18% Similarity=0.037 Sum_probs=135.2
Q ss_pred CCcEEEeccccCcC----CCCcccCCCCCCCeEEEecCCCCC--c----cC-CccCcCCcceEEeccCccccccCCCccc
Q 000782 996 LLECLEIGHCDNLH----KLPDGLHSLKSLNTLKIINCPSLA--A----LP-EIDASSSLRYLQIQQCEALRSLPAGLTC 1064 (1287)
Q Consensus 996 ~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~L~~n~~~~--~----~~-~~~~l~~L~~L~ls~n~~~~~~~~~~~~ 1064 (1287)
.|+.|++++|.... .++..+...++|++|+++++.+.. . ++ .+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 36666666665422 134445556667777776665542 0 11 2344567777777777655433322221
Q ss_pred CCCCcccEEEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcCCC---CcCCCC-CCcceEEecCccCCcccccccccCc
Q 000782 1065 NKNLSLEFFELDGCSSLISFPDGELPLTLQHLKISNCPNLNFLPA---GLLHKN-TCLECLQISGCSLNSFPVICSSNLS 1140 (1287)
Q Consensus 1065 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~~~---~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~ 1140 (1287)
.. .. ++|++|++++|........ ..+..+ ++|++|++++|.++.-....+
T Consensus 104 l~---------------------~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~---- 157 (319)
T cd00116 104 LL---------------------RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL---- 157 (319)
T ss_pred Hh---------------------cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH----
Confidence 11 00 2466666666644311000 012233 567777777776663111000
Q ss_pred cccCCCCCCCCCcceeEEecCCCCc----ccccccCCCCCcceEEeccCCCccccC----C-CCCCCCcceEEEecCCCC
Q 000782 1141 SLSASSPKSSSRLKMLEICNCMDLI----SLPDDLYNFICLDKLLISNCPKLVSFP----A-GGLPPNLKSLSISDCENL 1211 (1287)
Q Consensus 1141 ~l~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~~~~~~~----~-~~~~~~L~~L~Ls~n~~~ 1211 (1287)
...+..+++|+.|++++|.... .++..+..+++|+.|++++|.+.+... . ...+++|++|++++|++.
T Consensus 158 ---~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 158 ---AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred ---HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 0112234566777776665542 234445566788889998887753321 1 245688999999998876
Q ss_pred CcCcccC-----CCCCCcCeEeeccCCCCc----CCCCC-CCCCCcceeeeccCcCccC----CCCCCCCcc-CccceEE
Q 000782 1212 VTLPNQM-----QSMTSLQDLTISNCIHLE----SFPEG-GLPPNLKSLCIIECINLEA----PSKWDLHKL-RSIENFL 1276 (1287)
Q Consensus 1212 ~~~~~~l-----~~l~~L~~L~l~~n~~l~----~lp~~-~~~~~L~~L~i~~c~~L~~----~~~~~l~~~-~~L~~l~ 1276 (1287)
......+ ...++|++|++++|.+.. .+... ...++|+.+++..+.-=.. .... +... +.++.++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~~~~ 313 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES-LLEPGNELESLW 313 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH-HhhcCCchhhcc
Confidence 5222221 124789999999987631 11100 1126777887766532111 1111 1223 5788888
Q ss_pred EcCcCC
Q 000782 1277 ISNASS 1282 (1287)
Q Consensus 1277 i~~n~~ 1282 (1287)
+.+|++
T Consensus 314 ~~~~~~ 319 (319)
T cd00116 314 VKDDSF 319 (319)
T ss_pred cCCCCC
Confidence 887764
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=2.3e-09 Score=125.61 Aligned_cols=295 Identities=18% Similarity=0.249 Sum_probs=190.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 245 (1287)
..|-|.+ +.+.|... .+.+.+.|..++|.||||++.+.+. + ...-..+.|.+.... .+..+....++
T Consensus 20 ~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 20 NYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred cccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHH
Confidence 4555654 55555433 4789999999999999999999975 1 222346899998765 45778888888
Q ss_pred HHccCCCC-------------CCCChHHHHHHHHHHcC--CCeEEEEEeCCCCCChhhH-hHhcccCCCCCCCcEEEEEc
Q 000782 246 ESLGESCG-------------HITQLEPLQSALKRKLT--LKRYLLVLDDLWGENYNEW-EVLQLPFRGGAHGSKIIVTT 309 (1287)
Q Consensus 246 ~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~-~~~~~~l~~~~~gs~ilvTt 309 (1287)
+.++.-.+ ...+...+.+.+...+. .++..+||||..-...... +.+...+....++-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 77763221 12233344444554443 4689999999855332222 33444444555688999999
Q ss_pred CchhhHhHhc---CcCeEEcc----CCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCC
Q 000782 310 RSENVAQIVG---TVPVFHLQ----ELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSK 382 (1287)
Q Consensus 310 R~~~v~~~~~---~~~~~~l~----~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 382 (1287)
|..--..... ....++++ .++.+|+.++|..... .+-.+.-+..+.+..+|-+-|+..++-.++..
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 9864321111 11233332 3899999999987652 12334557899999999999999999998844
Q ss_pred CCHhHHHHHHcccccCCCCCCCCchh-HHHhhhcCCCCChhhHhhhhcccCCCceechHHHHHHHHHcCccccCCCCCCh
Q 000782 383 SNVDEWQHILNSEVWELPDEKTGILP-GLALSYHHLPSHLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQN 461 (1287)
Q Consensus 383 ~~~~~w~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 461 (1287)
.+.+.-...+. +..+.+.. ...--++.||+++|..++.+|+++. +. ..|+.. .+-
T Consensus 241 ~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~-------------Ltg 296 (894)
T COG2909 241 TSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNA-------------LTG 296 (894)
T ss_pred CcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHH-------------Hhc
Confidence 33332222211 11111211 2234568999999999999999953 22 223222 123
Q ss_pred hhhHhHHHHHHhhCCcce-ecCCCccccchhhHHHHHHHhhccc
Q 000782 462 EDVGSHYFHDLLSRSLFQ-RSSRNISRFIMHDLINDLAQFAAGE 504 (1287)
Q Consensus 462 ~~~~~~~l~~L~~~~li~-~~~~~~~~~~mH~lv~~~a~~~~~~ 504 (1287)
++.+...+++|.+++|+- +-++....|+.|.++.||.+..-..
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 456788999999999975 4455667999999999998765443
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=2.7e-10 Score=123.80 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=100.2
Q ss_pred cccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH---
Q 000782 168 IYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI--- 244 (1287)
Q Consensus 168 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 244 (1287)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+. .+..-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 799999999999988654 4578999999999999999999983 3222224444444443322 112222
Q ss_pred -----------HHHccCCCC------CCCChHHHHHHHHHHc--CCCeEEEEEeCCCCCC------hhhHhHhcccCCC-
Q 000782 245 -----------LESLGESCG------HITQLEPLQSALKRKL--TLKRYLLVLDDLWGEN------YNEWEVLQLPFRG- 298 (1287)
Q Consensus 245 -----------~~~l~~~~~------~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~------~~~~~~~~~~l~~- 298 (1287)
...+..... ...........+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111100 0111122223333333 2355999999994422 1111222222222
Q ss_pred -CCCCcEEEEEcCchhhHhH--------hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch
Q 000782 299 -GAHGSKIIVTTRSENVAQI--------VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP 369 (1287)
Q Consensus 299 -~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (1287)
......+|+++....+... .+....+.+++++.+++++++....-.. . .. +...+..++|...+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1223344455444444433 1233459999999999999999875332 1 11 223556789999999999
Q ss_pred hHHHH
Q 000782 370 LAAKA 374 (1287)
Q Consensus 370 Lai~~ 374 (1287)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=5.2e-11 Score=147.99 Aligned_cols=240 Identities=26% Similarity=0.313 Sum_probs=141.7
Q ss_pred CCCcccEEEecCCC--CcccCc-cccCCCccceEecCCC-CCcccchhhhcccCccEEeecCcccccccCCCCCCCCCce
Q 000782 572 NFSRLRVLSLSHYE--IVELPD-LIGDLKHLRYLDLSNT-SIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLR 647 (1287)
Q Consensus 572 ~~~~Lr~L~L~~~~--i~~lp~-~~~~l~~Lr~L~Ls~n-~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 647 (1287)
.++.|++|-+.+|. +..++. .|..++.||+|||++| .+.++|++|+.|.+|++|+|+++. +..+|..+.+|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence 44578888888885 666664 4777899999999866 467889999999999999998885 668888899999999
Q ss_pred EEEecCCccc-cCCcCCCCCCCCCccCceecCCCCCcCcccccccccCCCceEEccccCCCCcchhhhccCCCCCCCCeE
Q 000782 648 FLDIRGCNLQ-QLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKL 726 (1287)
Q Consensus 648 ~L~l~~n~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 726 (1287)
+|++..+.-. .+|..+..|++|++|.++.... .........+..+.+|+.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~----------------------------~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSAL----------------------------SNDKLLLKELENLEHLENL 673 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecccc----------------------------ccchhhHHhhhcccchhhh
Confidence 9998887633 4444455588888885544320 0111122233444455544
Q ss_pred EEEecCCCCCCchHHHhccCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCeeEEEEecCCCCCCCCCCCCcccccceeec
Q 000782 727 ELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPPLGQLPSLKNLIIE 806 (1287)
Q Consensus 727 ~l~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 806 (1287)
...... ..+++.+.....|. +..+.+.+.+|........++.+.+|+.|.+.
T Consensus 674 s~~~~s-------~~~~e~l~~~~~L~---------------------~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 674 SITISS-------VLLLEDLLGMTRLR---------------------SLLQSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred eeecch-------hHhHhhhhhhHHHH---------------------HHhHhhhhcccccceeecccccccCcceEEEE
Confidence 442211 01111111111111 11122222333333444457777888888888
Q ss_pred cCcceeEeCCccccCCccccc-cccccceeeccCCCCCCcccCCCCCCCCccceEeecCCCCCcccCC
Q 000782 807 GMDAISRVGPEFYADSWLSIK-SFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIP 873 (1287)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~-~f~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 873 (1287)
+|...+.....+.... .. .|+++..+.+.++.......+ ....|+|+.|++..|+.+...+|
T Consensus 726 ~~~~~e~~~~~~~~~~---~~~~f~~l~~~~~~~~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLI---VLLCFPNLSKVSILNCHMLRDLTW--LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cCCCchhhcccccccc---hhhhHHHHHHHHhhccccccccch--hhccCcccEEEEecccccccCCC
Confidence 8776544332211110 11 266777766666655443211 23467899999998877764444
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.05 E-value=2.3e-09 Score=134.22 Aligned_cols=310 Identities=18% Similarity=0.214 Sum_probs=185.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE---ecCCCC---HHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF---VSDEFD---LVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~---~~~~ 240 (1287)
.++||+.+++.|...+..- ..+...++.+.|.+|||||+++++|.. .+.+.+...+-.. ...... ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 3789999999999998654 345667999999999999999999987 3333322111111 111111 2223
Q ss_pred HHHHHHHc-------------------cCCCC---------------CC-------CChHH-----HHHHHHHHc-CCCe
Q 000782 241 TKAILESL-------------------GESCG---------------HI-------TQLEP-----LQSALKRKL-TLKR 273 (1287)
Q Consensus 241 ~~~i~~~l-------------------~~~~~---------------~~-------~~~~~-----~~~~l~~~l-~~k~ 273 (1287)
+++++.++ +.... +. ...+. ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333333 21110 00 00011 112223333 4569
Q ss_pred EEEEEeCCCCCChhhHhHhcccCCCCC----CCcEEEEEcCchhh----HhHhcCcCeEEccCCChhhHHHHHHHHHcCC
Q 000782 274 YLLVLDDLWGENYNEWEVLQLPFRGGA----HGSKIIVTTRSENV----AQIVGTVPVFHLQELSDNDCWSLFAQHAFSK 345 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~~~~~~l~~~~----~gs~ilvTtR~~~v----~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 345 (1287)
.++|+||+.+.|....+-+........ ....|..+...... .........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999997776665555443332221 01123333322221 1122244689999999999999999877432
Q ss_pred CCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCC------CCHhHHHHHHcccccCCCCCCCCchhHHHhhhcCCCC
Q 000782 346 LNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSK------SNVDEWQHILNSEVWELPDEKTGILPGLALSYHHLPS 419 (1287)
Q Consensus 346 ~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 419 (1287)
. ....+....|+++..|+|+.+..+-..+... .+...|..-..+ .........+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~--i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS--LGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh--cCCchhhHHHHHHHHHHHhcCCH
Confidence 2 2345678899999999999999999888764 223333322211 11111112255568899999999
Q ss_pred ChhhHhhhhcccCCCceechHHHHHHHHHcCccccCCCCCChhhhHhHHHHHHhhCCcceec-----CCCcc---ccchh
Q 000782 420 HLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDVGSHYFHDLLSRSLFQRS-----SRNIS---RFIMH 491 (1287)
Q Consensus 420 ~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~li~~~-----~~~~~---~~~mH 491 (1287)
..|..+...||+ |-.|+.+.|...|-. ....++....+.|....++-.. ..... +-..|
T Consensus 309 ~t~~Vl~~AA~i--G~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACI--GNRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHh--CccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 999999999999 667777777766521 3445666666666655555321 11112 22589
Q ss_pred hHHHHHHHhh
Q 000782 492 DLINDLAQFA 501 (1287)
Q Consensus 492 ~lv~~~a~~~ 501 (1287)
|.||+.|...
T Consensus 376 ~~vqqaaY~~ 385 (849)
T COG3899 376 DRVQQAAYNL 385 (849)
T ss_pred HHHHHHHhcc
Confidence 9999988654
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.03 E-value=3.9e-09 Score=119.07 Aligned_cols=276 Identities=17% Similarity=0.120 Sum_probs=151.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+|||+++.++++..++... .........+.++|++|+|||+||+.+++. ....+ ..+......... .+...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~-~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAA-KMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHH-HhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHH
Confidence 6999999999999888642 111234556889999999999999999983 32222 112211111111 2223333
Q ss_pred HccCCC----CCCC-ChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHhc--
Q 000782 247 SLGESC----GHIT-QLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIVG-- 319 (1287)
Q Consensus 247 ~l~~~~----~~~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~-- 319 (1287)
.++... ++.. -.......+...+.+.+..+|+|+.+... .| ...++ +.+-|..||+...+.....
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHHhh
Confidence 332211 0000 01122344555566666667777653321 11 11122 2455667777654433321
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCCCCHhHHHHHHcccccCC
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQHILNSEVWEL 399 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~ 399 (1287)
....+++++++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..++..+ |..........+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCc
Confidence 2346799999999999999988753221 2234677899999999997665444432 111000000000
Q ss_pred CCC-CCCchhHHHhhhcCCCCChhhHhh-hhcccCCCceechHHHHHHHHHcCccccCCCCCChhhhHhHHHH-HHhhCC
Q 000782 400 PDE-KTGILPGLALSYHHLPSHLKPCFA-YCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDVGSHYFH-DLLSRS 476 (1287)
Q Consensus 400 ~~~-~~~i~~~l~~sy~~L~~~~k~cf~-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~~ 476 (1287)
... -..+...+...|..++++.+..+. .++.++.+ .+..+.+.... + .....++..++ .|++++
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g-~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------G-EDADTIEDVYEPYLLQIG 284 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----------C-CCcchHHHhhhHHHHHcC
Confidence 000 011222245567888888777666 44666543 45554443331 1 12345677788 699999
Q ss_pred cceecC
Q 000782 477 LFQRSS 482 (1287)
Q Consensus 477 li~~~~ 482 (1287)
||....
T Consensus 285 li~~~~ 290 (305)
T TIGR00635 285 FLQRTP 290 (305)
T ss_pred CcccCC
Confidence 997554
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=2.2e-09 Score=121.53 Aligned_cols=276 Identities=17% Similarity=0.146 Sum_probs=152.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+|+|+++.++.+..++... .......+.+.|+|++|+|||++|+.+++. ....+ .++... .......+..++.
T Consensus 26 ~~vG~~~~~~~l~~~l~~~-~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAA-KKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HhcCcHHHHHHHHHHHHHH-HhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHH
Confidence 7999999999998887542 111234567889999999999999999984 33222 112111 1111222333343
Q ss_pred HccCCCC-CCCCh----HHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHhc--
Q 000782 247 SLGESCG-HITQL----EPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIVG-- 319 (1287)
Q Consensus 247 ~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~-- 319 (1287)
.+....- -.++. ....+.+...+.+.+..+|+|+..... .+...++ +.+-|..|||...+.....
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHHh
Confidence 3322110 00000 112233444445555556666543211 1111111 2445666777554433221
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCCCCHhHHHHHHcccccCC
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQHILNSEVWEL 399 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~ 399 (1287)
....+++++++.++..+++.+.+..... ....+.+..|++.|+|.|-.+..+...+ ..|....... .+
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~--~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG--VI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--CC
Confidence 1246899999999999999988754321 2334678899999999996444444332 1222211110 01
Q ss_pred CC-CCCCchhHHHhhhcCCCCChhhHhh-hhcccCCCceechHHHHHHHHHcCccccCCCCCChhhhHhHHHH-HHhhCC
Q 000782 400 PD-EKTGILPGLALSYHHLPSHLKPCFA-YCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDVGSHYFH-DLLSRS 476 (1287)
Q Consensus 400 ~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~~ 476 (1287)
.. .-......+...|..|++..+..+. ....|+.+ .+..+.+.... . ...+.+++.++ .|++.+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g------~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G------EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C------CCcchHHHHhhHHHHHcC
Confidence 00 0012334455667788888777775 66677655 56666654332 1 12344555666 899999
Q ss_pred cceecC
Q 000782 477 LFQRSS 482 (1287)
Q Consensus 477 li~~~~ 482 (1287)
||+...
T Consensus 306 li~~~~ 311 (328)
T PRK00080 306 FIQRTP 311 (328)
T ss_pred CcccCC
Confidence 998654
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.97 E-value=2.6e-08 Score=117.50 Aligned_cols=304 Identities=11% Similarity=0.072 Sum_probs=164.2
Q ss_pred cCCCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc---cccc--ceeEEEEecCCCC
Q 000782 162 SLVDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV---NDHF--ELKAWAFVSDEFD 236 (1287)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~ 236 (1287)
.++++.+.|||+|+++|...|..... +.....++.|+|++|.|||++++.|.+.... +... -.+++|.+....+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 34556899999999999999865422 1233467889999999999999999874211 1112 2356777777677
Q ss_pred HHHHHHHHHHHccCCCCC-CCChHHHHHHHHHHcC---CCeEEEEEeCCCCCChhhHhHhcccCCC-CCCCcEEEE--Ec
Q 000782 237 LVKVTKAILESLGESCGH-ITQLEPLQSALKRKLT---LKRYLLVLDDLWGENYNEWEVLQLPFRG-GAHGSKIIV--TT 309 (1287)
Q Consensus 237 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilv--Tt 309 (1287)
...++..|.+++...... ..........+...+. +...+||||+|..-....-+.+...+.+ ...+++|+| +|
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEec
Confidence 888999999888543321 2223334444444442 2345899999943211111222222221 123555544 33
Q ss_pred CchhhH--------hHhcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcC
Q 000782 310 RSENVA--------QIVGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRS 381 (1287)
Q Consensus 310 R~~~v~--------~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 381 (1287)
...+.. ..++ ...+...|++.++-.+++..++-.....-++..++-+|+.++...|-.-.||.++-.+...
T Consensus 910 NdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred Cchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 322221 1222 2346789999999999999988543222233344455555555555566777666555432
Q ss_pred CC----CHhHHHHHHcccccCCCCCCCCchhHHHhhhcCCCCChhhHhhhhcccCC---CceechHHHHHHH--HHc--C
Q 000782 382 KS----NVDEWQHILNSEVWELPDEKTGILPGLALSYHHLPSHLKPCFAYCAIFPK---GYEFEANDLVRLW--MAE--G 450 (1287)
Q Consensus 382 ~~----~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~a~fp~---~~~i~~~~li~~w--~a~--g 450 (1287)
.. ..++-..+.... -...+.-....||.+.|-.+..+...-+ ...++...+.... +++ |
T Consensus 989 kegskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G 1058 (1164)
T PTZ00112 989 KRGQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG 1058 (1164)
T ss_pred cCCCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh
Confidence 21 122222222211 0111233446788887765554433211 1134444443322 222 1
Q ss_pred -ccccCCCCCChhhhHhHHHHHHhhCCcceec
Q 000782 451 -LMYEPRRNMQNEDVGSHYFHDLLSRSLFQRS 481 (1287)
Q Consensus 451 -~i~~~~~~~~~~~~~~~~l~~L~~~~li~~~ 481 (1287)
.+.. ....+ ....++.+|...|+|-..
T Consensus 1059 k~iGv---~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1059 KYIGM---CSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhcCC---CCcHH-HHHHHHHHHHhcCeEEec
Confidence 1110 11122 566777777777777654
No 36
>PF05729 NACHT: NACHT domain
Probab=98.86 E-value=1.2e-08 Score=103.89 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=87.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccc----cceeEEEEecCCCCHH---HHHHHHHHHccCCCCCCCChHHHHHHHH
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDH----FELKAWAFVSDEFDLV---KVTKAILESLGESCGHITQLEPLQSALK 266 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 266 (1287)
|++.|+|.+|+||||+++.++.+-..... +...+|+......... .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 58999999999999999999874222221 4566777766554432 33333333332211 11111 122
Q ss_pred HH-cCCCeEEEEEeCCCCCChh-------hHhHhc-ccCCC-CCCCcEEEEEcCchhhH---hHhcCcCeEEccCCChhh
Q 000782 267 RK-LTLKRYLLVLDDLWGENYN-------EWEVLQ-LPFRG-GAHGSKIIVTTRSENVA---QIVGTVPVFHLQELSDND 333 (1287)
Q Consensus 267 ~~-l~~k~~LlVlDdv~~~~~~-------~~~~~~-~~l~~-~~~gs~ilvTtR~~~v~---~~~~~~~~~~l~~L~~~~ 333 (1287)
.. -+.+++++|+|++.+-... .+..+. ..+.. ..++.+++||+|..... ........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999998543211 122222 22222 24689999999987662 333344689999999999
Q ss_pred HHHHHHHHH
Q 000782 334 CWSLFAQHA 342 (1287)
Q Consensus 334 a~~lf~~~a 342 (1287)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7e-10 Score=119.23 Aligned_cols=94 Identities=24% Similarity=0.074 Sum_probs=48.1
Q ss_pred CCCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCccccc
Q 000782 1090 PLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPD 1169 (1287)
Q Consensus 1090 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~ 1169 (1287)
+..|++|||++|+....--......++.|+.|+++.|.|+++...... .-.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~-----------------------------s~~ 295 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE-----------------------------SLD 295 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCcc-----------------------------chh
Confidence 345677777776555432112345566666666666666654211100 000
Q ss_pred ccCCCCCcceEEeccCCCcc--ccCCCCCCCCcceEEEecCCCCC
Q 000782 1170 DLYNFICLDKLLISNCPKLV--SFPAGGLPPNLKSLSISDCENLV 1212 (1287)
Q Consensus 1170 ~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~~~L~~L~Ls~n~~~~ 1212 (1287)
-...+++|++|+++.|++.. .+.....+.+|+.|.+..|.+..
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 12346667777777776632 22223455666666666665554
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-09 Score=116.55 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=40.7
Q ss_pred cccccccceecccccccccccccccCcCCCcEEEeccccCcCC-CCcccCCCCCCCeEEEecCCCCCccC-CccCcCCcc
Q 000782 968 RNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHK-LPDGLHSLKSLNTLKIINCPSLAALP-EIDASSSLR 1045 (1287)
Q Consensus 968 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~ 1045 (1287)
++|+|+.|+++.|.+.....+......+.|+.|.|+.|...-. +-..+..+|+|+.|++.+|....... ....+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 4455555555555544433333333334555555555554321 22233455556666665553221111 333445555
Q ss_pred eEEeccCccc
Q 000782 1046 YLQIQQCEAL 1055 (1287)
Q Consensus 1046 ~L~ls~n~~~ 1055 (1287)
.|+|++|.+.
T Consensus 250 ~LdLs~N~li 259 (505)
T KOG3207|consen 250 ELDLSNNNLI 259 (505)
T ss_pred hccccCCccc
Confidence 5555555543
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=7.5e-09 Score=102.60 Aligned_cols=108 Identities=30% Similarity=0.355 Sum_probs=57.3
Q ss_pred CCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhh-hcccCccEEeecCcccccc-cCCCCCCCCCceEE
Q 000782 572 NFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESI-AALYNLQTLILYSCRYLIQ-LPKHMGDLFNLRFL 649 (1287)
Q Consensus 572 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~n~~~~~-lp~~~~~L~~L~~L 649 (1287)
.+.+|++|+|++|.|+.++ .+..+++|+.|++++|.|+.+++.+ ..+++|++|+|++|++... .-..+..+++|++|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 5788999999999999985 6888999999999999999997666 4699999999999975332 11346788999999
Q ss_pred EecCCccccCCcC----CCCCCCCCccCceecCCC
Q 000782 650 DIRGCNLQQLPPH----MGGLKNLRTLPSFLVSKD 680 (1287)
Q Consensus 650 ~l~~n~l~~lp~~----i~~L~~L~~L~~~~~~~~ 680 (1287)
++.+|.+...+.. +..+++|+.|+...+...
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred eccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 9999998876643 788899999987766543
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=1.5e-07 Score=100.20 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=97.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
.+.+.|+|++|+|||+||+++++. .......+.|+.+... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 357899999999999999999984 3223335566665421 00000 1111222 2
Q ss_pred eEEEEEeCCCCCC-hhhHhH-hcccCCCC-CCCcEEE-EEcCc---------hhhHhHhcCcCeEEccCCChhhHHHHHH
Q 000782 273 RYLLVLDDLWGEN-YNEWEV-LQLPFRGG-AHGSKII-VTTRS---------ENVAQIVGTVPVFHLQELSDNDCWSLFA 339 (1287)
Q Consensus 273 ~~LlVlDdv~~~~-~~~~~~-~~~~l~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~lf~ 339 (1287)
.-+||+||+|... ...|+. +...+... ..|..+| +|++. +++..++.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998642 234553 32222221 2355554 45543 4566666667789999999999999999
Q ss_pred HHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 340 QHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
+.+....- .--+++.+-|++++.|..-++..+-..+
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98864321 2335678889999998776665554443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.4e-07 Score=101.62 Aligned_cols=155 Identities=24% Similarity=0.265 Sum_probs=98.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
+.+.-+..||++|+||||||+.++. .....| ..++...+-..-++.++++- -+....
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a----------------~~~~~~ 102 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA----------------RKNRLL 102 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH----------------HHHHhc
Confidence 3677888999999999999999997 444444 33444433333334444321 122334
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE--EcCchhhH---hHhcCcCeEEccCCChhhHHHHHHHHHcCC
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV--TTRSENVA---QIVGTVPVFHLQELSDNDCWSLFAQHAFSK 345 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~ 345 (1287)
+++.+|++|.|..-+..+.+.+. |.-..|.-|+| ||.++... .......++.+++|+.++-.+++.+-+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 89999999999776544444443 33345777777 66666432 122356799999999999999998844222
Q ss_pred CCC---CCCchhhHHHHHHHhhcCCchhH
Q 000782 346 LNP---EARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 346 ~~~---~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
... ....-.+++...+++.++|---+
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 111 11112345677788888886543
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.67 E-value=6e-07 Score=104.91 Aligned_cols=176 Identities=22% Similarity=0.255 Sum_probs=106.8
Q ss_pred ccccchhhHHH---HHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 167 RIYGREEDADK---LIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 167 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
++||++..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++........++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHH
Confidence 68888877655 77776543 4567888999999999999999873 33333 223222111122222
Q ss_pred HHHHccCCCCCCCChHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE--EcCchh--hH-hH
Q 000782 244 ILESLGESCGHITQLEPLQSALKR-KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV--TTRSEN--VA-QI 317 (1287)
Q Consensus 244 i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--TtR~~~--v~-~~ 317 (1287)
+++.. .. ...+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +. ..
T Consensus 80 ii~~~-----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIEEA-----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHH-----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 22221 11 1245788999999987655555555554433 444554 344332 11 11
Q ss_pred hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHH
Q 000782 318 VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALG 376 (1287)
Q Consensus 318 ~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 376 (1287)
......+.+.++++++.++++.+.+..... .......+..+.|++.|+|.|..+..+.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 223468999999999999999886532111 0012335677889999999987664443
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.7e-08 Score=118.85 Aligned_cols=107 Identities=38% Similarity=0.538 Sum_probs=94.2
Q ss_pred hcCCCcccEEEecCCCCcccCccccCCC-ccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceE
Q 000782 570 LKNFSRLRVLSLSHYEIVELPDLIGDLK-HLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRF 648 (1287)
Q Consensus 570 ~~~~~~Lr~L~L~~~~i~~lp~~~~~l~-~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 648 (1287)
+..++.++.|++.+|.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 4456889999999999999999888885 9999999999999999899999999999999996 6777777779999999
Q ss_pred EEecCCccccCCcCCCCCCCCCccCceec
Q 000782 649 LDIRGCNLQQLPPHMGGLKNLRTLPSFLV 677 (1287)
Q Consensus 649 L~l~~n~l~~lp~~i~~L~~L~~L~~~~~ 677 (1287)
|++++|.+..+|..++.+..|++|....+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 99999999999988777777888854433
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=1.4e-09 Score=120.50 Aligned_cols=98 Identities=32% Similarity=0.405 Sum_probs=77.8
Q ss_pred CCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEec
Q 000782 573 FSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIR 652 (1287)
Q Consensus 573 ~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 652 (1287)
+.--...||+.|++..+|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.|+ +..+|..++.|+ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEe
Confidence 33345678888888888888888888888888888888888888888888888888885 677888888775 8888888
Q ss_pred CCccccCCcCCCCCCCCCcc
Q 000782 653 GCNLQQLPPHMGGLKNLRTL 672 (1287)
Q Consensus 653 ~n~l~~lp~~i~~L~~L~~L 672 (1287)
+|+++.+|..++.+..|..|
T Consensus 152 NNkl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred cCccccCCcccccchhHHHh
Confidence 88888888887754444444
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=1.6e-09 Score=120.12 Aligned_cols=103 Identities=35% Similarity=0.553 Sum_probs=89.5
Q ss_pred hcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEE
Q 000782 570 LKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFL 649 (1287)
Q Consensus 570 ~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 649 (1287)
+..|-.|..|.|.+|.+-.+|..++++..|.||||+.|+++.+|..++.|+ |+.|.+++|+ ++.+|..++.+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHh
Confidence 445667888889999999999999999999999999999999998888775 8999999885 78888889988999999
Q ss_pred EecCCccccCCcCCCCCCCCCccCc
Q 000782 650 DIRGCNLQQLPPHMGGLKNLRTLPS 674 (1287)
Q Consensus 650 ~l~~n~l~~lp~~i~~L~~L~~L~~ 674 (1287)
|.+.|.+..+|..++.|.+|+.|..
T Consensus 172 d~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 172 DVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhhhhhhchHHhhhHHHHHHHHH
Confidence 9999999999999999888888743
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=8.2e-08 Score=104.38 Aligned_cols=293 Identities=20% Similarity=0.201 Sum_probs=187.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccc-eeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFE-LKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
..+.+.++|.|||||||++-++.. ++.-|. .+.++....-.+...+.-.+...++-... .-+.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 468999999999999999998886 455564 45556666656666666666665655432 22334456677778
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHhcCcCeEEccCCChh-hHHHHHHHHHcCCCCC-
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIVGTVPVFHLQELSDN-DCWSLFAQHAFSKLNP- 348 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~a~~lf~~~a~~~~~~- 348 (1287)
++|.++|+||..+- ...-..+...+..+.+.-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 112222333444455566788888875432 23456778888765 7999998776432221
Q ss_pred CCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCCCC-------HhHHHHHHcccccCCCCCCCCchhHHHhhhcCCCCCh
Q 000782 349 EARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSN-------VDEWQHILNSEVWELPDEKTGILPGLALSYHHLPSHL 421 (1287)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~-------~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 421 (1287)
.-.......+.+|.++.+|.|++|...++..+.-.. .+.|...-+- ........+...+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHH
Confidence 112234567889999999999999999998876521 1223222221 11111122457889999999999999
Q ss_pred hhHhhhhcccCCCceechHHHHHHHHHcCccccCCCCCChhhhHhHHHHHHhhCCcceecCC-CccccchhhHHHHHHHh
Q 000782 422 KPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDVGSHYFHDLLSRSLFQRSSR-NISRFIMHDLINDLAQF 500 (1287)
Q Consensus 422 k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~-~~~~~~mH~lv~~~a~~ 500 (1287)
+--|..++.|..++.-. ...|.+-|-... .+.......+..+++.+++..... +...|+.-+-+|.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998776644 234444432211 122344555677888888865432 34567777777777765
Q ss_pred hccc
Q 000782 501 AAGE 504 (1287)
Q Consensus 501 ~~~~ 504 (1287)
+..+
T Consensus 313 eL~r 316 (414)
T COG3903 313 ELHR 316 (414)
T ss_pred HHHh
Confidence 5443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1.2e-09 Score=116.93 Aligned_cols=110 Identities=14% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCcceeEEecCCCCc--ccccccCCCCCcceEEeccCCCcccc-----CCC-CCCCCcceEEEecCCCCCc-CcccCCC
Q 000782 1150 SSRLKMLEICNCMDLI--SLPDDLYNFICLDKLLISNCPKLVSF-----PAG-GLPPNLKSLSISDCENLVT-LPNQMQS 1220 (1287)
Q Consensus 1150 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~-----~~~-~~~~~L~~L~Ls~n~~~~~-~~~~l~~ 1220 (1287)
+..|+.|++..|..+. .+...-.+++.|+.|.+++|..+... ... ..+..|++|.|++|+.+.. .-+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 4455566665555443 23333456788888888888765443 111 4567899999999987763 3345778
Q ss_pred CCCcCeEeeccCCCCcCCCCCCCCCCcceeeeccCcCcc
Q 000782 1221 MTSLQDLTISNCIHLESFPEGGLPPNLKSLCIIECINLE 1259 (1287)
Q Consensus 1221 l~~L~~L~l~~n~~l~~lp~~~~~~~L~~L~i~~c~~L~ 1259 (1287)
+++|+.+++-+|+.++.-+...+-..+..+.+.......
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~ 463 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPV 463 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceehhhccCC
Confidence 899999999999887665543344555555555544333
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=6.4e-09 Score=105.77 Aligned_cols=86 Identities=24% Similarity=0.245 Sum_probs=63.7
Q ss_pred cCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEE
Q 000782 571 KNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLD 650 (1287)
Q Consensus 571 ~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 650 (1287)
..++.|..|||++|.|+.+.+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++|. +..+...-.+|-+.+.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 35667888888888888888888888888888888888887743 7778888888888874 555555555677777777
Q ss_pred ecCCcccc
Q 000782 651 IRGCNLQQ 658 (1287)
Q Consensus 651 l~~n~l~~ 658 (1287)
+++|.+..
T Consensus 359 La~N~iE~ 366 (490)
T KOG1259|consen 359 LAQNKIET 366 (490)
T ss_pred hhhhhHhh
Confidence 77765443
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=7.5e-10 Score=115.92 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=132.5
Q ss_pred cccCCCCCCCeEEEecCCCCCccC-----CccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCCCCcCCCC
Q 000782 1013 DGLHSLKSLNTLKIINCPSLAALP-----EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDG 1087 (1287)
Q Consensus 1013 ~~~~~l~~L~~L~L~~n~~~~~~~-----~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 1087 (1287)
..+..++.|+.|+||+|-+-...+ -+..+..|++|.+.+|.+....-..++. .|.+|. .... .
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~----al~~l~--~~kk------~ 153 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR----ALFELA--VNKK------A 153 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH----HHHHHH--HHhc------c
Confidence 356677888888998887755443 2456788888888888754332222211 111111 0011 1
Q ss_pred CCCCCccEEEeeCCCCCCcCCC----CcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCC
Q 000782 1088 ELPLTLQHLKISNCPNLNFLPA----GLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMD 1163 (1287)
Q Consensus 1088 ~~~~~L~~L~ls~~~~l~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~ 1163 (1287)
..++.|+++....|.. ...+. ..|...+.|+.+.++.|.|..-.. .+-...+..+++|+.|+|.+|..
T Consensus 154 ~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-------~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-------TALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred CCCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchh-------HHHHHHHHhCCcceeeecccchh
Confidence 1334788888888844 33322 245666788888888887664211 11123445688889999988876
Q ss_pred Cc----ccccccCCCCCcceEEeccCCCccccCC------CCCCCCcceEEEecCCCCCc----CcccCCCCCCcCeEee
Q 000782 1164 LI----SLPDDLYNFICLDKLLISNCPKLVSFPA------GGLPPNLKSLSISDCENLVT----LPNQMQSMTSLQDLTI 1229 (1287)
Q Consensus 1164 ~~----~~~~~~~~l~~L~~L~Ls~n~~~~~~~~------~~~~~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~l 1229 (1287)
.. .+...+..+++|+.|++++|.+...-.. ....++|++|.+.+|.++.. +...+...+.|..|+|
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNL 305 (382)
T ss_pred hhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcC
Confidence 65 4466777889999999999987643221 14578999999999998762 3334566899999999
Q ss_pred ccCCC
Q 000782 1230 SNCIH 1234 (1287)
Q Consensus 1230 ~~n~~ 1234 (1287)
++|.+
T Consensus 306 ngN~l 310 (382)
T KOG1909|consen 306 NGNRL 310 (382)
T ss_pred Ccccc
Confidence 99998
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=4e-07 Score=101.29 Aligned_cols=60 Identities=28% Similarity=0.541 Sum_probs=39.3
Q ss_pred CCCCcceEEEecCCCCCcCcccCCCCCCcCeEeeccCCCC-cCCCCCCCCCCcceeeeccCcCcc
Q 000782 1196 LPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHL-ESFPEGGLPPNLKSLCIIECINLE 1259 (1287)
Q Consensus 1196 ~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~l-~~lp~~~~~~~L~~L~i~~c~~L~ 1259 (1287)
.+++|++|++++|.... +|..+. .+|++|+++.|... -.++...+|+++ .|.+.+|..+.
T Consensus 154 LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 45688888888877553 444443 58888888776432 234555677788 88888875543
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.1e-05 Score=98.25 Aligned_cols=202 Identities=22% Similarity=0.155 Sum_probs=122.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc---ceeEEEEecCC---CCHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF---ELKAWAFVSDE---FDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~ 240 (1287)
+++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 6899999999888877433 34579999999999999999998753322222 12334444321 122221
Q ss_pred HH---------------HHHHHccCCC----------------CCCC-ChHHHHHHHHHHcCCCeEEEEEeCCCCCChhh
Q 000782 241 TK---------------AILESLGESC----------------GHIT-QLEPLQSALKRKLTLKRYLLVLDDLWGENYNE 288 (1287)
Q Consensus 241 ~~---------------~i~~~l~~~~----------------~~~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 288 (1287)
.. ..++..+... ++.. -....+..+.+.+.++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 11 1112212110 0111 12235778888899999999988888777677
Q ss_pred HhHhcccCCCCCCCcEEEE--EcCchhh-HhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhh
Q 000782 289 WEVLQLPFRGGAHGSKIIV--TTRSENV-AQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKK 364 (1287)
Q Consensus 289 ~~~~~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~ 364 (1287)
|+.+...+....+...|+| ||++... ...+ .....+.+.+++.++.++++.+.+-... ..-..++.+.|++.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~----v~ls~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN----VHLAAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHC
Confidence 8888776666655555555 6665432 1111 2334688999999999999998764221 11123455566666
Q ss_pred cCCchhHHHHHHhh
Q 000782 365 CKGLPLAAKALGGL 378 (1287)
Q Consensus 365 ~~g~PLai~~~~~~ 378 (1287)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 55446666655544
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=9.6e-08 Score=77.58 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=28.2
Q ss_pred cccEEEecCCCCcccC-ccccCCCccceEecCCCCCcccc-hhhhcccCccEEeecCc
Q 000782 575 RLRVLSLSHYEIVELP-DLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSC 630 (1287)
Q Consensus 575 ~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n 630 (1287)
+|++|++++|++..+| ..|.++++|++|++++|.|+.+| ..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4455555555555544 34455555555555555555443 34455555555555554
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=3.6e-09 Score=113.28 Aligned_cols=272 Identities=19% Similarity=0.248 Sum_probs=131.7
Q ss_pred eeEEEEecCCCCCCCCC---CCCcccccceeeccCcceeEeCCccccCCccccccccccceeeccCCCCCCcccCCC-CC
Q 000782 777 LVFLSLINCRNCTYLPP---LGQLPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPD-VG 852 (1287)
Q Consensus 777 L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~-~~ 852 (1287)
|+.|.+.+|.-.+.-+. ...+|+++.|.+.+|..+... .+.. .-..+++|+.|.+..|..|++..... ..
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~--s~~s----la~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS--SLLS----LARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH--HHHH----HHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 44555555544332221 345666666666666532211 0000 01336667777776666666543332 24
Q ss_pred CCCccceEeecCCCCCccc-CCCCCCCcCEEEEc---cCCCccc------cCCCCccceeeeeccchhhhhh----hccc
Q 000782 853 EFPHLHELCIENCPKFSKE-IPRSLVSLKTLEIL---NCRELSW------IPCLPQIQNLILEECGQVILES----IVDL 918 (1287)
Q Consensus 853 ~~~~L~~L~l~~c~~l~~~-~p~~l~~L~~L~~l---~~~~~~~------~~~lp~L~~L~l~~~~~~~~~~----~~~l 918 (1287)
.+++|++|+++.|+.+++. +-....+++.++-+ .|..... -...+.+..+++.+|....... -..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 5777777777777766641 11111222222111 2222110 0122233344444443222121 1235
Q ss_pred Cccceeeeccccccccchh-hhhccCCCccceEeeccccccccccccccccccccccceeccccccccc-ccccccCcCC
Q 000782 919 TSLVKLRLYKILSLRCLAS-EFFHRLTVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLW-PEEGHALPDL 996 (1287)
Q Consensus 919 ~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~~ 996 (1287)
..|+.|..+++..+++... ....+..+|+.|.+++|+.........-..+.+.|+.+++..+...... -.......+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 6677777777766555442 3445667777777777766544333333345566666666666432111 1112222245
Q ss_pred CcEEEeccccCcCCC-----CcccCCCCCCCeEEEecCCCCCccC--CccCcCCcceEEeccCcc
Q 000782 997 LECLEIGHCDNLHKL-----PDGLHSLKSLNTLKIINCPSLAALP--EIDASSSLRYLQIQQCEA 1054 (1287)
Q Consensus 997 L~~L~l~~~~~~~~l-----~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~L~ls~n~~ 1054 (1287)
|++|.+++|...+.. ...-..+..|..+.+++|+.+.... .+..+++|+.+++.+|+.
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 666666666555443 2333455566666666666654432 344555666666666543
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=2.1e-08 Score=99.43 Aligned_cols=103 Identities=30% Similarity=0.355 Sum_probs=37.5
Q ss_pred CCCcccEEEecCCCCcccCcccc-CCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCC-CCCCCceEE
Q 000782 572 NFSRLRVLSLSHYEIVELPDLIG-DLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHM-GDLFNLRFL 649 (1287)
Q Consensus 572 ~~~~Lr~L~L~~~~i~~lp~~~~-~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~-~~L~~L~~L 649 (1287)
+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|++. .++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 5557899999999999885 455 6899999999999999995 6889999999999999754 444334 368999999
Q ss_pred EecCCccccCCc--CCCCCCCCCccCceec
Q 000782 650 DIRGCNLQQLPP--HMGGLKNLRTLPSFLV 677 (1287)
Q Consensus 650 ~l~~n~l~~lp~--~i~~L~~L~~L~~~~~ 677 (1287)
++++|.|..+.. .+..+++|+.|++..+
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 999999876532 3566777777765544
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.52 E-value=8.2e-07 Score=95.44 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=101.4
Q ss_pred chhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccC
Q 000782 171 REEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGE 250 (1287)
Q Consensus 171 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 250 (1287)
.+..++++.+++... ..+.+.|+|.+|+|||++|+.+++. ........+++.+..-... ...+
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~------ 84 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEV------ 84 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHH------
Confidence 445667777765432 4578899999999999999999874 2222334555555432110 0111
Q ss_pred CCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChh-hH-hHhcccCCC-CCCCcEEEEEcCchh---------hHhHh
Q 000782 251 SCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYN-EW-EVLQLPFRG-GAHGSKIIVTTRSEN---------VAQIV 318 (1287)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~ilvTtR~~~---------v~~~~ 318 (1287)
...+.+ .-+||+||++.-... .| +.+...+.. ...+.++|+||+... +...+
T Consensus 85 ---------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 ---------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ---------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 111222 238999999654322 22 233332221 122347888887532 22222
Q ss_pred cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhh
Q 000782 319 GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGL 378 (1287)
Q Consensus 319 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 378 (1287)
.....+++.++++++...++...+-... .+-..+..+.|++.++|.|..+.-+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2345799999999999999987653221 1223466788888999999877666443
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.52 E-value=1.1e-07 Score=77.21 Aligned_cols=60 Identities=38% Similarity=0.539 Sum_probs=55.1
Q ss_pred CccceEecCCCCCcccc-hhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecCCcc
Q 000782 597 KHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNL 656 (1287)
Q Consensus 597 ~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l 656 (1287)
++|++|++++|+|+.+| ..|.++++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57999999999999997 5889999999999999988777788999999999999999974
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=1.9e-07 Score=90.62 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=79.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccc---cccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVN---DHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRK 268 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 268 (1287)
+.+++.|+|.+|+|||+++++++++.... ..-..++|+.+....+...+...++++++.......+.+.+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999842110 003456799998888999999999999988765555677777888887
Q ss_pred cCCC-eEEEEEeCCCCC-ChhhHhHhcccCCCCCCCcEEEEEcCc
Q 000782 269 LTLK-RYLLVLDDLWGE-NYNEWEVLQLPFRGGAHGSKIIVTTRS 311 (1287)
Q Consensus 269 l~~k-~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~ 311 (1287)
+... ..+||+|++..- ....++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7654 459999999543 3333444433332 456677777665
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.8e-06 Score=96.21 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=109.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc-------------------cceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-------------------FELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 227 (1287)
+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++....... +....
T Consensus 17 ~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred hccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 7899999999999888654 23467789999999999999999873211100 11111
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV 307 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 307 (1287)
++..+....+. ..+++++.+.. .-..+++-++|+|++..-....++.+...+.......++|+
T Consensus 92 ~~~~~~~~~v~-~ir~i~~~~~~----------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 92 EIDAASRTKVE-EMREILDNIYY----------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred EecccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 11111111111 11122111100 00124556999999976655567777766665555667777
Q ss_pred EcCch-hhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhH
Q 000782 308 TTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 308 TtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
+|.+. .+...+ +....+++.+++.++..+.+...+...+ ....++.+..|++.++|.|-.
T Consensus 155 ~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g----~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 155 ATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES----IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHH
Confidence 66543 333222 2346899999999999988887663321 112345677899999998853
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=3.4e-06 Score=94.99 Aligned_cols=177 Identities=13% Similarity=0.174 Sum_probs=117.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccc----ccccccceeEEEEe-cCCCCHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDE----KVNDHFELKAWAFV-SDEFDLVKVT 241 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~ 241 (1287)
+++|.+..++.+...+..+ .-.+...++|+.|+||||+|+.+++.. ....|.|...|... +....++. .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 5789999999999998654 345677899999999999999988731 22345666555442 22233333 2
Q ss_pred HHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhH-hH-hc
Q 000782 242 KAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVA-QI-VG 319 (1287)
Q Consensus 242 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~-~~-~~ 319 (1287)
+++.+.+.... ..+++-++|+|++...+...+..+...+.....++.+|++|.+.+.. .. ..
T Consensus 79 r~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 33333332110 12455567777776556678888988888877888888888765422 21 22
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
.+..+.+.++++++....+.+... + ...+.++.++..++|.|..+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~-~-------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN-D-------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc-C-------CCHHHHHHHHHHcCCCHHHHH
Confidence 457899999999999887765431 1 113346788999999887554
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.4e-06 Score=91.95 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=131.6
Q ss_pred cCCCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccc--eeEEEEecCCCCHHH
Q 000782 162 SLVDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFE--LKAWAFVSDEFDLVK 239 (1287)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~ 239 (1287)
.++++.+.+|+++++++...|...... ....-+.|+|.+|.|||+.++.+.+. ++.... .+++|.+-...+...
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHH
Confidence 345557999999999999988764322 22334899999999999999999983 333321 178899999999999
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHc--CCCeEEEEEeCCCCCChhhHhHhcccCCCCC-CCcEE--EEEcCchhh
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKL--TLKRYLLVLDDLWGENYNEWEVLQLPFRGGA-HGSKI--IVTTRSENV 314 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~-~gs~i--lvTtR~~~v 314 (1287)
++..|+.+++..........+....+.+.+ .++.++||||++..--...-+.+-..+.... .+++| |..+-+...
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 999999999754444555666667777766 4589999999994321111022222222221 13443 334444333
Q ss_pred HhHhc-------CcCeEEccCCChhhHHHHHHHHHcCCCCC-CCCchhhHHHHHHHhhcC-CchhHHHHHH
Q 000782 315 AQIVG-------TVPVFHLQELSDNDCWSLFAQHAFSKLNP-EARPSLESIGKEIAKKCK-GLPLAAKALG 376 (1287)
Q Consensus 315 ~~~~~-------~~~~~~l~~L~~~~a~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~-g~PLai~~~~ 376 (1287)
...+. ....+..+|-+.+|-...+..++-.+..+ ...+..-++...++..-+ ---.||..+-
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 32221 12348899999999999999887432221 222333334444444444 4445555543
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.47 E-value=9.7e-07 Score=89.11 Aligned_cols=181 Identities=22% Similarity=0.232 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
++|||.+..++.+.-++... ........-+..+|++|+||||||.-+++ .....|. +.+...-....+ +..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa-~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~d-l~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAA-KKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGD-LAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHH-HCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHH-HHHHH
T ss_pred HHccCcHHHHhhhHHHHHHH-HhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHH-HHHHH
Confidence 48999999888876555321 11124577889999999999999999998 4454442 222211111111 11222
Q ss_pred HHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCC--------CCC-----------cEEE
Q 000782 246 ESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGG--------AHG-----------SKII 306 (1287)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~--------~~g-----------s~il 306 (1287)
.. + +++-+|.+|+++.-+...-+.+..++.++ +++ +-|=
T Consensus 97 ~~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TN---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hh---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 21 1 23446777888665433333333222211 111 1233
Q ss_pred EEcCchhhHhHhcCc--CeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 307 VTTRSENVAQIVGTV--PVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 307 vTtR~~~v~~~~~~~--~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
.|||...+...+... -..+++..+.+|-.++..+.+.. -.-+-.++.+.+|++++.|-|--..-+-...
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 488876554443322 24579999999999999876632 2223556889999999999996544443333
No 62
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=2.4e-05 Score=86.28 Aligned_cols=162 Identities=12% Similarity=0.167 Sum_probs=99.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
.|+||+++++++...|... + ....+++.|+|++|+|||||++.+..... + .+++.-.. +..++++.++.
T Consensus 263 ~FVGReaEla~Lr~VL~~~-d--~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRL-D--TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred CCCCcHHHHHHHHHHHhcc-C--CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHHH
Confidence 8999999999999999643 1 23456999999999999999999986322 2 23333333 67999999999
Q ss_pred HccCCCCCCCChHHHHHHHHHHc------CCCeEEEEEeCCCCCCh-hhHhHhcccCCCCCCCcEEEEEcCchhhHhHh-
Q 000782 247 SLGESCGHITQLEPLQSALKRKL------TLKRYLLVLDDLWGENY-NEWEVLQLPFRGGAHGSKIIVTTRSENVAQIV- 318 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~- 318 (1287)
+||.+.. ....++...|.+.+ ++++.+||+-==...+. ..+.+.. .+.....-|.|++----+......
T Consensus 332 ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 332 ALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcc
Confidence 9997432 22233444444333 26777777652211110 1111111 222333456777654443322111
Q ss_pred --cCcCeEEccCCChhhHHHHHHHHH
Q 000782 319 --GTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 319 --~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
..-..|-+++++.++|.++-.+..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 122468899999999998877643
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.2e-07 Score=111.73 Aligned_cols=95 Identities=32% Similarity=0.417 Sum_probs=77.0
Q ss_pred cEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhccc-CccEEeecCcccccccCCCCCCCCCceEEEecCCc
Q 000782 577 RVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALY-NLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCN 655 (1287)
Q Consensus 577 r~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~-~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~ 655 (1287)
..|++..+.+...+..+..+..+..|++.+|.++.+|..+..+. +|+.|++++|+ +..+|..++.+++|+.|++++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 45788888875555566777889999999999999998888885 99999999985 67777778999999999999999
Q ss_pred cccCCcCCCCCCCCCcc
Q 000782 656 LQQLPPHMGGLKNLRTL 672 (1287)
Q Consensus 656 l~~lp~~i~~L~~L~~L 672 (1287)
+..+|...+.+++|+.|
T Consensus 175 l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 175 LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhhhhhhhhhhhhhhhe
Confidence 98888766555555555
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.9e-06 Score=101.71 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=114.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc-------------------cceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-------------------FELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 227 (1287)
++||.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++...-... |..++
T Consensus 17 dIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred HhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 7899999999999888654 22355689999999999999999874211110 11112
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV 307 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 307 (1287)
++.......+. .++++.+.+. ..-..+++-++|+|++.......+..+...+-......++|+
T Consensus 92 EidAas~~kVD-dIReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVD-DTRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHH-HHHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 22111111111 1122222211 011246778999999977776777787777765555666666
Q ss_pred EcCc-hhhHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHH
Q 000782 308 TTRS-ENVAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKAL 375 (1287)
Q Consensus 308 TtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 375 (1287)
+|.+ ..+... ...+..|++++++.++..+.+.+.+-... .....+.+..|++.++|.|- |+.++
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 444322 23457899999999999999988663311 12334677889999999885 44443
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.5e-06 Score=98.09 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=111.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc-------------------cccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN-------------------DHFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 227 (1287)
++||.+...+.|..++... .-.+.+.++|+.|+||||+|+.+++...-. +.|..++
T Consensus 16 dVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 16 ELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 7899999999999998654 234788999999999999999988631110 0111112
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHH----HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCc
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKR----KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGS 303 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 303 (1287)
.+..+.. ...++....+.. -..+++-++|+|+|..-+......+...+.....+.
T Consensus 91 EIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v 149 (702)
T PRK14960 91 EIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHV 149 (702)
T ss_pred Eeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCc
Confidence 2222111 112222221111 123566789999997766566777776666555566
Q ss_pred EEEEEcCch-hhHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 304 KIIVTTRSE-NVAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 304 ~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
++|++|.+. .+... ...+..+++++++.++..+.+.+.+-..+ .....+....|++.++|.+-.+
T Consensus 150 ~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg----I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 150 KFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ----IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 777777653 23222 23457899999999999998887763322 1233556788999999977433
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=1.1e-05 Score=96.01 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=115.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccc-------------------ccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND-------------------HFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 227 (1287)
++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+.+...... .|..++
T Consensus 17 EVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred HHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 7899999999999998654 2345667999999999999998876321111 111122
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCc
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGS 303 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 303 (1287)
++..+... ..+++...+... ..++.-++|+|++...+...|..+...+.....+.
T Consensus 92 EIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 92 EMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred Eecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 22222111 122222222111 13455688999998776667888877776655677
Q ss_pred EEEEEcCchh-hHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch-hHHHHHHh
Q 000782 304 KIIVTTRSEN-VAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP-LAAKALGG 377 (1287)
Q Consensus 304 ~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 377 (1287)
++|+||++.. +... ...+..+++++++.++..+.+.+.+.... .....+....|++.++|.. -|+..+-.
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg----I~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER----IAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8777777643 3222 23457899999999999999988763221 1233567788999998855 46655433
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.8e-07 Score=104.39 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=115.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|.+...+.|..++... .-.+.+.++|++|+||||+|+.+++.....+.+...+|.+.+... +..-...-+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 6899999999998888654 234667999999999999999998743211222222222211100 0000000000
Q ss_pred HccCCCCCCCChHHHHHHHHHH-----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcC-chhhHhHh-c
Q 000782 247 SLGESCGHITQLEPLQSALKRK-----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTR-SENVAQIV-G 319 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR-~~~v~~~~-~ 319 (1287)
.+... .....+... .+++. ..+++-++|+|+++......+..+...+......+.+|++|. ...+...+ .
T Consensus 89 el~~~--~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 89 EIDAA--SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred Eeccc--ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000 011122211 12222 234566899999977666677777777765544555555554 33433322 2
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHHhh
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALGGL 378 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 378 (1287)
....+++.+++.++..+.+.+.+...+- ...++.+..|++.++|.+- |+..+-..
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4568999999999999999987743221 1235678899999999885 44444343
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=3.4e-07 Score=112.45 Aligned_cols=98 Identities=28% Similarity=0.510 Sum_probs=86.9
Q ss_pred cccEEEecCCCCc-ccCccccCCCccceEecCCCCCc-ccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEec
Q 000782 575 RLRVLSLSHYEIV-ELPDLIGDLKHLRYLDLSNTSIK-SLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIR 652 (1287)
Q Consensus 575 ~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 652 (1287)
.++.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..++.+++|++|+|++|++.+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999998 78999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred CCccc-cCCcCCCCC-CCCCcc
Q 000782 653 GCNLQ-QLPPHMGGL-KNLRTL 672 (1287)
Q Consensus 653 ~n~l~-~lp~~i~~L-~~L~~L 672 (1287)
+|.++ .+|..++.+ .++..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCcccccCChHHhhccccCceE
Confidence 99987 788777653 244444
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=2e-06 Score=85.71 Aligned_cols=125 Identities=18% Similarity=0.094 Sum_probs=72.3
Q ss_pred ccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHc
Q 000782 169 YGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESL 248 (1287)
Q Consensus 169 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 248 (1287)
+||+..++++...+... ..+.+.|+|.+|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999998888653 346889999999999999999998422 222345666655443322211111000
Q ss_pred cCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHh---cccCCCC---CCCcEEEEEcCchh
Q 000782 249 GESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVL---QLPFRGG---AHGSKIIVTTRSEN 313 (1287)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~---~~~l~~~---~~gs~ilvTtR~~~ 313 (1287)
............++.++|+||++.........+ ...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345678999999975322222222 2222221 35778888888653
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=7.5e-06 Score=96.03 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=112.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccce-eEEEEecCCCCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFEL-KAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 245 (1287)
+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.......... ..+..+... .....+.
T Consensus 22 dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 7899999999888877654 23467889999999999999999873211100000 000000000 0000010
Q ss_pred HHccC-----CCCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE-EcCchhhH
Q 000782 246 ESLGE-----SCGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV-TTRSENVA 315 (1287)
Q Consensus 246 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~ 315 (1287)
..... ........+++...+... ..+++-++|+|+++.-....+..+...+....+.+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000 000111222222222111 245677899999987766778888777766555666554 55555554
Q ss_pred hHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 316 QIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 316 ~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
..+ .....+++.+++.++....+.+.+.... .....+....|++.++|.+-
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg----i~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQEN----LKTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHH
Confidence 433 2456799999999999999998874322 11234567789999999774
No 71
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.36 E-value=4.7e-07 Score=94.03 Aligned_cols=47 Identities=30% Similarity=0.457 Sum_probs=32.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+||||+++++++...+... .....+.+.|+|.+|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999521 2345699999999999999999999874
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=7.5e-06 Score=94.21 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=107.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccc-eeEEEEecCCCCH-HHHHH--
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFE-LKAWAFVSDEFDL-VKVTK-- 242 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~-- 242 (1287)
.++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..+.+.+++.... ...+.
T Consensus 16 ~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcC
Confidence 6899999999999888543 334678999999999999999987321 11121 2233443321100 00000
Q ss_pred -HHHHHccCC-CCCCCChHHHHHHHHHH---c--CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hh
Q 000782 243 -AILESLGES-CGHITQLEPLQSALKRK---L--TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NV 314 (1287)
Q Consensus 243 -~i~~~l~~~-~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v 314 (1287)
.....++.. .......+.....++.. . .+.+-+||+||+..-.......+...+......+++|+||... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 00001112222222221 1 2345589999996544334444554444333456787777543 22
Q ss_pred HhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 315 AQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 315 ~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
...+ .....+++.+++.++..+.+.+.+....- .-..+.++.+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2222 23457889999999999999887643221 1235678889999988765443
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.34 E-value=1e-05 Score=86.42 Aligned_cols=149 Identities=20% Similarity=0.106 Sum_probs=90.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.|+|.+|+|||.||+++++. ...+...++|+.+.+ ....+. ..+. .+. +
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l~-~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-ALE-G 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HHh-c
Confidence 356999999999999999999873 333333556665432 111111 1111 111 2
Q ss_pred eEEEEEeCCCCCC-hhhHhH-hcccCCC-CCCCcEEEEEcCch---------hhHhHhcCcCeEEccCCChhhHHHHHHH
Q 000782 273 RYLLVLDDLWGEN-YNEWEV-LQLPFRG-GAHGSKIIVTTRSE---------NVAQIVGTVPVFHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 273 ~~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~lf~~ 340 (1287)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++..++.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3489999995321 123332 2222211 12356799999842 2233334456899999999999999998
Q ss_pred HHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 341 HAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
++.... -.-.+++...|++.++|-.-.+
T Consensus 174 ~a~~~~----l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRG----LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcC----CCCCHHHHHHHHHhCCCCHHHH
Confidence 775422 1233567788889888766544
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.5e-06 Score=95.53 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=112.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc------------------------cc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN------------------------DH 222 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~------------------------~~ 222 (1287)
++||.+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+++...-. +.
T Consensus 17 dVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 7899999999999998755 234667899999999999999987632110 00
Q ss_pred cceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCC
Q 000782 223 FELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRG 298 (1287)
Q Consensus 223 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~ 298 (1287)
|..++++.... ....+++.+.+... ..++.-++|+|++...+...+..+...+..
T Consensus 92 hpDviEIdAas---------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 92 FVDYIEMDAAS---------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred CCcceEecccc---------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 11111221111 11223222222221 145667999999987776777777777765
Q ss_pred CCCCcEEEE-EcCchhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 299 GAHGSKIIV-TTRSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 299 ~~~gs~ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
...+.++|+ ||....+...+ ..+..+.++.++.++..+.+.+.+..... ....+..+.|++.++|.|.-..
T Consensus 151 PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 151 PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 445566555 55444444332 24578999999999999988876632211 1223456789999999886443
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=95.14 Aligned_cols=185 Identities=19% Similarity=0.145 Sum_probs=113.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc-------------------cccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN-------------------DHFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 227 (1287)
+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-. +.|...+
T Consensus 17 diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 7899999999999888654 234567899999999999999998621100 0122223
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKR-KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKII 306 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 306 (1287)
++.......++. .++++ ..+.. -..+++-++|+|++..-....+..+...+......+.+|
T Consensus 92 eidaas~~gvd~-ir~ii-----------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 92 EIDAASRTGVEE-TKEIL-----------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EeecccccCHHH-HHHHH-----------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 332222112211 12222 22211 123566799999997766667777777776655566555
Q ss_pred -EEcCchhhHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch-hHHHHHHhh
Q 000782 307 -VTTRSENVAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP-LAAKALGGL 378 (1287)
Q Consensus 307 -vTtR~~~v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~ 378 (1287)
+||....+... ...+..+++++++.++..+.+.+.+-..+ ....++....|++.++|.+ -|+..+-..
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45544444423 23457899999999998888877553211 1233556778999999966 455555433
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.3e-06 Score=95.69 Aligned_cols=192 Identities=16% Similarity=0.080 Sum_probs=111.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++||.+..+..|..++... .-.+.+.++|+.|+||||+|+.+++...-. +... ...+.....-..+......
T Consensus 19 dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGISS 90 (484)
T ss_pred HHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCCc
Confidence 7899999999999888654 223568999999999999999998732111 1000 0001111111111111000
Q ss_pred Hc---cC-CCCCCCChHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE-EcCchhhHhHh-c
Q 000782 247 SL---GE-SCGHITQLEPLQSALKR-KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV-TTRSENVAQIV-G 319 (1287)
Q Consensus 247 ~l---~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~~~~-~ 319 (1287)
.+ .. ......+..++...+.. -..++.-++|+|++..-....+..+...+........+|+ ||....+...+ .
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 00 00 00001111222222221 1245667999999987777778888776655444555554 44444443332 3
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
.+..|.+.+++.++..+.+.+.+-..+ .....+....|++.++|.+-
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Eg----i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIEN----VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCChHH
Confidence 456799999999999988887763221 12235677889999999884
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=6.9e-06 Score=92.66 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=104.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccce-eEEEEecCCCCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFEL-KAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 245 (1287)
+++|.++.++.|..++... +.+.+.++|++|+||||+|+.+++.. ....|.. ++-+..++.... +..++++
T Consensus 14 ~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHH
Confidence 6889998888888877543 34457799999999999999998731 1222221 111222222222 1222222
Q ss_pred HHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-cCcCe
Q 000782 246 ESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-GTVPV 323 (1287)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~ 323 (1287)
+.+..... ..-.++.-++|+|++..-.......+...+......+++++++... .+.... .....
T Consensus 86 ~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 22110000 0002456799999997655455555555444434456777766442 222211 23457
Q ss_pred EEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 324 FHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 324 ~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
++++++++++....+...+-..+- .-..+....|++.++|..-
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 999999999999988887633221 1224567889999988663
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.31 E-value=1.4e-05 Score=85.36 Aligned_cols=156 Identities=14% Similarity=0.147 Sum_probs=93.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
.+.+.|+|++|+|||+|++.+++. ....-..+.++.+..... . ..+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~-----------------~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---F-----------------VPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---h-----------------hHHHHHHhhh-----
Confidence 357899999999999999999873 222223455665543100 0 0111111211
Q ss_pred eEEEEEeCCCCCC-hhhHhH-hcccCCC-CCCC-cEEEEEcCch---------hhHhHhcCcCeEEccCCChhhHHHHHH
Q 000782 273 RYLLVLDDLWGEN-YNEWEV-LQLPFRG-GAHG-SKIIVTTRSE---------NVAQIVGTVPVFHLQELSDNDCWSLFA 339 (1287)
Q Consensus 273 ~~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~lf~ 339 (1287)
--+|++||+.... ...|+. +...+.. -..| .++|+||+.. +...++....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 1378999995432 134443 2222211 1123 3799999854 344455566789999999999999998
Q ss_pred HHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 340 QHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
+++.... -.-.+++..-|++++.|..-++..+-..+
T Consensus 178 ~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8664321 12345778889999988766554444333
No 79
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.2e-07 Score=96.77 Aligned_cols=109 Identities=28% Similarity=0.341 Sum_probs=91.4
Q ss_pred HHHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCc
Q 000782 567 HDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNL 646 (1287)
Q Consensus 567 ~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L 646 (1287)
.....-.+.+|+|++++|.|..+.+ +..|++|..||||+|.++++-..=.+|-|.++|.|++|. +..+ ..+++|.+|
T Consensus 300 DESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~L-SGL~KLYSL 376 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETL-SGLRKLYSL 376 (490)
T ss_pred hhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhh
Confidence 4456678899999999999998854 899999999999999999886666789999999999994 5555 358999999
Q ss_pred eEEEecCCccccCC--cCCCCCCCCCccCceecC
Q 000782 647 RFLDIRGCNLQQLP--PHMGGLKNLRTLPSFLVS 678 (1287)
Q Consensus 647 ~~L~l~~n~l~~lp--~~i~~L~~L~~L~~~~~~ 678 (1287)
..||+++|+|..+. .+||+|+.|+++.+..+.
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 99999999988664 469999999999665543
No 80
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.28 E-value=1.1e-05 Score=85.12 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
++..-+.+||++|+||||||+.+....+-.. ..||..|....-..-.+.|+++-. =...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 4678889999999999999999997432222 456777765544444555555421 123456
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE--EcCchhhH---hHhcCcCeEEccCCChhhHHHHHHHHHc--
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV--TTRSENVA---QIVGTVPVFHLQELSDNDCWSLFAQHAF-- 343 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~~a~~lf~~~a~-- 343 (1287)
++|.+|.+|.|..-+..+.+. .+|.-..|.-++| ||.++..- ..+..+.++.|++|..++-..++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999996543322222 3555566877666 77776532 2234678899999999999988877321
Q ss_pred C-CCCC--CCCc----hhhHHHHHHHhhcCCchh
Q 000782 344 S-KLNP--EARP----SLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 344 ~-~~~~--~~~~----~~~~~~~~i~~~~~g~PL 370 (1287)
+ ...+ ..+. -...+.+-++..|+|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 1111 1111 234566677788888653
No 81
>PF13173 AAA_14: AAA domain
Probab=98.28 E-value=2e-06 Score=82.41 Aligned_cols=120 Identities=24% Similarity=0.198 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
.+++.|.|+-|+||||++++++++.. .-..++++...+........ .+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 36899999999999999999997432 23456666665432211000 00 223334434447
Q ss_pred eEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHh------cCcCeEEccCCChhhH
Q 000782 273 RYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIV------GTVPVFHLQELSDNDC 334 (1287)
Q Consensus 273 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~~a 334 (1287)
+.+|++|++.. ..+|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 78999999954 356777666666655667999999987665331 1234688999988764
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=2.6e-06 Score=94.85 Aligned_cols=133 Identities=26% Similarity=0.489 Sum_probs=88.9
Q ss_pred CCccEEEeeCCCCCCcCCCCcCCCCCCcceEEecCc-cCCcccccccccCccccCCCCCCCCCcceeEEecCCCCccccc
Q 000782 1091 LTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGC-SLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPD 1169 (1287)
Q Consensus 1091 ~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~ 1169 (1287)
.+++.|++++| .+..+|. -.++|++|.+++| .++.+|. ..+.+|+.|++++|..+..+|.
T Consensus 52 ~~l~~L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~--------------~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPG--------------SIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred cCCCEEEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCc--------------hhhhhhhheEccCccccccccc
Confidence 47889999998 6667772 2456999999886 4554442 1145788999998877766664
Q ss_pred ccCCCCCcceEEeccCCCccccCCCCCCCCcceEEEecCCCCC--cCcccCCCCCCcCeEeeccCCCCcCCCCCCCCCCc
Q 000782 1170 DLYNFICLDKLLISNCPKLVSFPAGGLPPNLKSLSISDCENLV--TLPNQMQSMTSLQDLTISNCIHLESFPEGGLPPNL 1247 (1287)
Q Consensus 1170 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~l~~n~~l~~lp~~~~~~~L 1247 (1287)
+|+.|+++++... .++ ..+++|+.|.+.+++... .+|..+ .++|++|++++|..+ .+| ..+|.+|
T Consensus 113 ------sLe~L~L~~n~~~-~L~--~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP-~~LP~SL 179 (426)
T PRK15386 113 ------SVRSLEIKGSATD-SIK--NVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILP-EKLPESL 179 (426)
T ss_pred ------ccceEEeCCCCCc-ccc--cCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCc-ccccccC
Confidence 5777777765442 222 355688888886543221 122111 268999999999975 456 4689999
Q ss_pred ceeeeccC
Q 000782 1248 KSLCIIEC 1255 (1287)
Q Consensus 1248 ~~L~i~~c 1255 (1287)
+.|.+..+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 99998764
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.26 E-value=2.1e-05 Score=89.69 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=104.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEe--cCCCCHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFV--SDEFDLVKVTKAI 244 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i 244 (1287)
+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++.. ....+. ..++.+ +...... ..++.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRNK 88 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHHH
Confidence 6899999999999988643 33457999999999999999998742 111121 122222 2211111 11111
Q ss_pred HHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-cCcC
Q 000782 245 LESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-GTVP 322 (1287)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~ 322 (1287)
+..+.... ......+-+||+|++..-.......+...+......+++|+++... .+.... ....
T Consensus 89 i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11111000 0001245689999986544444555555554444456777766432 222211 2334
Q ss_pred eEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhH
Q 000782 323 VFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 323 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
.+++.++++++....+...+...+- .-.++.+..+++.++|.+--
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 6899999999999988887743221 12356788899999998754
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.5e-05 Score=95.60 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=112.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++||.+..++.|...+... .-.+.+.++|..|+||||+|+.+++...-...+. ......-...+.|..
T Consensus 17 divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 17 EVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 7899999999999888654 2235568999999999999999987321110000 000000011111110
Q ss_pred Hcc-----CCCCCCCChHHHHHHHHH----HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhHh
Q 000782 247 SLG-----ESCGHITQLEPLQSALKR----KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVAQ 316 (1287)
Q Consensus 247 ~l~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~ 316 (1287)
.-. .........++....+.+ -..+++-++|+|++..-.......+...+.......++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000 000000112222211111 12466779999999777666777777776665556666555554 44432
Q ss_pred H-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHH
Q 000782 317 I-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKAL 375 (1287)
Q Consensus 317 ~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 375 (1287)
. ...+..+++++++.++..+.+.+.+-... .....+....|++.++|.+- |+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 23457899999999999999887652211 11234566789999999876 44443
No 85
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.9e-05 Score=88.90 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=115.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccc--ccceeEEEEecCCCCHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND--HFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
.++|.++..+.+...+... .-.+.+.|+|+.|+||||+|..+++...-.. .+.... ...........+.+
T Consensus 24 ~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i 95 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQI 95 (351)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHH
Confidence 7999999999999998655 3456789999999999999999887321100 011110 00011111122333
Q ss_pred HHH-------ccCCC-------CCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcE-
Q 000782 245 LES-------LGESC-------GHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSK- 304 (1287)
Q Consensus 245 ~~~-------l~~~~-------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~- 304 (1287)
... +..+. ...-.+++. +.+.+++ .+++-++|+|++...+......+...+........
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 221 10000 011123333 2344443 35667999999977776666777666655434445
Q ss_pred EEEEcCchhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 305 IIVTTRSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 305 ilvTtR~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
|++|++...+.... .....+++.+++.++..+++.+.+.. . . ...+.+..|++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~-~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q-G---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 45554443333222 24568999999999999999874311 1 1 22445778999999999865544
No 86
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=1.2e-06 Score=93.18 Aligned_cols=89 Identities=20% Similarity=0.114 Sum_probs=61.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC--CCHHHHHHHHHHHccCCCCCCCChH------HHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE--FDLVKVTKAILESLGESCGHITQLE------PLQS 263 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 263 (1287)
....++|+|++|+|||||+++++++.... +|+.++|+.+... .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999964433 8999999997776 7899999998433322211111111 1122
Q ss_pred HHHHH-cCCCeEEEEEeCC
Q 000782 264 ALKRK-LTLKRYLLVLDDL 281 (1287)
Q Consensus 264 ~l~~~-l~~k~~LlVlDdv 281 (1287)
....+ -.++++++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22222 2589999999999
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1e-08 Score=104.58 Aligned_cols=177 Identities=21% Similarity=0.197 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCCCccC--CccCcCCcceEEeccCccccccCCCcccCCCCcccEEEEcCCCCCCcCCCCCCCCCccEEE
Q 000782 1020 SLNTLKIINCPSLAALP--EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDGELPLTLQHLK 1097 (1287)
Q Consensus 1020 ~L~~L~L~~n~~~~~~~--~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 1097 (1287)
.|+.|||++..++...- .+..|.+|+.|.+.++++...+...++... +|+.|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-------------------------~L~~ln 240 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-------------------------NLVRLN 240 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-------------------------cceeec
Confidence 47777887766654322 456677888888888877766655555433 455556
Q ss_pred eeCCCCCCcCCC-CcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCc---ccccccCC
Q 000782 1098 ISNCPNLNFLPA-GLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLI---SLPDDLYN 1173 (1287)
Q Consensus 1098 ls~~~~l~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~ 1173 (1287)
++.|..++.... -++.+++.|..|+|++|.++.-- .........++|..|++++|...- .+..-...
T Consensus 241 lsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~---------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 241 LSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK---------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred cccccccchhHHHHHHHhhhhHhhcCchHhhccchh---------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 665555443321 24566777777777777554311 011111223445555555543221 12222234
Q ss_pred CCCcceEEeccCCCccccC--CCCCCCCcceEEEecCCCCCcCcc---cCCCCCCcCeEeeccC
Q 000782 1174 FICLDKLLISNCPKLVSFP--AGGLPPNLKSLSISDCENLVTLPN---QMQSMTSLQDLTISNC 1232 (1287)
Q Consensus 1174 l~~L~~L~Ls~n~~~~~~~--~~~~~~~L~~L~Ls~n~~~~~~~~---~l~~l~~L~~L~l~~n 1232 (1287)
+|+|..||||.|....... ....++.|++|.++.|. ..+|+ .+...|+|.+||+-||
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 5556666665554432211 11444555555555554 22333 2344555555555554
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2.4e-05 Score=89.24 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=107.1
Q ss_pred ccccchhhHHHHHHHHhcCcc----cCCCCeEEEEEEcCCCChHHHHHHHHhccccccc------------------ccc
Q 000782 167 RIYGREEDADKLIDFLLKDVE----ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND------------------HFE 224 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~----~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f~ 224 (1287)
+++|.+..++.+..++..+.. ....-.+.+.++|++|+|||++|+.+++...-.. .+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 688999999999999876410 0001346788999999999999999876211100 011
Q ss_pred eeEEEEecC-CCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCc
Q 000782 225 LKAWAFVSD-EFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGS 303 (1287)
Q Consensus 225 ~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 303 (1287)
.+.++.... ...++. .+++.+.+.. .-..+++-++|+|++...+......+...+.....+.
T Consensus 86 D~~~i~~~~~~i~i~~-iR~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~ 148 (394)
T PRK07940 86 DVRVVAPEGLSIGVDE-VRELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRT 148 (394)
T ss_pred CEEEeccccccCCHHH-HHHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCC
Confidence 111221110 011111 1111111110 0012455588889997766556666666665555566
Q ss_pred EEEEEcCch-hhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 304 KIIVTTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 304 ~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
.+|++|.+. .+...+ .....+.+.+++.++..+.+.+... ...+.+..+++.++|.|.....+
T Consensus 149 ~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 149 VWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred eEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 666655553 444332 3457899999999999988874321 11345778999999999755433
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.1e-05 Score=92.07 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=108.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc-------------------cceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-------------------FELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 227 (1287)
++||.+...+.+...+..+ .-.+.+.++|++|+||||+|+.+++....... +..+.
T Consensus 15 divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 7899998888888877554 23356789999999999999999873211100 00122
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV 307 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 307 (1287)
.+..+.......+ +.+.+.... .-..+++-++|+|++..-.......+...+........+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2222211112111 122211110 01234667999999965443445556555554333444444
Q ss_pred -EcCchhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCC-chhHHHHHHhhh
Q 000782 308 -TTRSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKG-LPLAAKALGGLL 379 (1287)
Q Consensus 308 -TtR~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~l 379 (1287)
||....+...+ .....+++.+++.++....+.+.+....- .-..++...|++.++| .+.|+..+....
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44333443333 24568999999999999988887643211 1234567788887764 567777776543
No 90
>PRK04195 replication factor C large subunit; Provisional
Probab=98.23 E-value=6.2e-05 Score=90.01 Aligned_cols=246 Identities=16% Similarity=0.165 Sum_probs=136.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|.++.++++.+|+.... .+...+.+.|+|++|+||||+|+.++++. . |+ ++-+.+++.... .....++.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHHH
Confidence 69999999999999987541 11236789999999999999999999842 2 22 233344433222 22233332
Q ss_pred HccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCCh----hhHhHhcccCCCCCCCcEEEEEcCch-hhHh-Hh-c
Q 000782 247 SLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENY----NEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQ-IV-G 319 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~-~~-~ 319 (1287)
...... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+. .... .. .
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc
Confidence 211100 01113678999999965321 234445444432 233466665432 2211 11 2
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhhcCC-C--CHhHHHHHHcccc
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSK-S--NVDEWQHILNSEV 396 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~--~~~~w~~~l~~~~ 396 (1287)
....+.+.+++.++....+.+.+....- ....++...|++.++|..-.+......+... . +.+....+..
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi----~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--- 223 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGI----ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--- 223 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---
Confidence 3467999999999999988877643221 1224678899999999776544333333322 1 2333332321
Q ss_pred cCCCCCCCCchhHHHhhhc-CCCCChhhHhhhhcccCCCceechHHHHHHHHHcCcccc
Q 000782 397 WELPDEKTGILPGLALSYH-HLPSHLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYE 454 (1287)
Q Consensus 397 ~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~i~~ 454 (1287)
.+...+++.++..-+. .-+......+.. ..++.+ .+-.|+.|.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1222446777665554 222222222211 223333 4668999998753
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.6e-05 Score=87.16 Aligned_cols=192 Identities=14% Similarity=0.097 Sum_probs=113.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeE------EEEecCCCCHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKA------WAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~------wv~~~~~~~~~~~ 240 (1287)
+++|.++..+.+.+.+..+ .-.+.+.++|+.|+||+|+|..+++..--........ =..+.... ..
T Consensus 20 ~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred hccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 7899999999999988664 2346788999999999999998876311111000000 00000000 11
Q ss_pred HHHHHHHccCC----------CC----CCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCC
Q 000782 241 TKAILESLGES----------CG----HITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAH 301 (1287)
Q Consensus 241 ~~~i~~~l~~~----------~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~ 301 (1287)
.+.+...-..+ .. ..-.+++ .+.+.+.+ .+.+-++|+||+...+......+...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111100000 00 0112333 23333333 25677999999987777777777777766555
Q ss_pred CcEEEEEcCchh-hHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 302 GSKIIVTTRSEN-VAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 302 gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
++.+|++|.... +...+ .....+.+.+++.++..+.+.+.... . ..+....+++.++|.|.....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~---~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L---PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 666677666553 33222 34578999999999999999875411 1 1122267899999999866544
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=3.4e-05 Score=79.88 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCC
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNP 348 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 348 (1287)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456789999996655556677777776655566777776643 332222 23468999999999999888776 1
Q ss_pred CCCchhhHHHHHHHhhcCCchhH
Q 000782 349 EARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
..++.+..|++.++|.|..
T Consensus 169 ----i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred ----CCHHHHHHHHHHcCCCccc
Confidence 1145688999999998853
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.9e-05 Score=93.93 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=107.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccc-------------------ccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND-------------------HFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 227 (1287)
++||.+..++.|..++... .-.+.+.++|..|+||||+|+.+++...... .|..++
T Consensus 17 dIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 7999999999999998754 2346789999999999999999876311110 011111
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHH----HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCc
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKR----KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGS 303 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 303 (1287)
.+..... ...+.+...+.. -..+++-++|+|++..........+...+......+
T Consensus 92 EidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 92 EIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred EEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 2221111 112222222211 013466789999996655445556666665444456
Q ss_pred EEEEEcCch-hhHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 304 KIIVTTRSE-NVAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 304 ~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
++|++|.+. .+... .+.+..+.+++++.++....+.+.+-..+ .....+....|++.++|.+.-+
T Consensus 151 ~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg----i~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK----IAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCCHHHH
Confidence 666666543 33222 23345788999999999999887764322 1223457789999999988533
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=1.2e-05 Score=98.78 Aligned_cols=171 Identities=22% Similarity=0.235 Sum_probs=98.3
Q ss_pred ccccchhhHH---HHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 167 RIYGREEDAD---KLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 167 ~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
+|+|++..+. .+...+... +...+.++|++|+||||+|+.+++ ....+|.. +.+.. ....+ .++
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~---lna~~-~~i~d-ir~ 95 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIAN--HTRAHFSS---LNAVL-AGVKD-LRA 95 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH--HhcCccee---ehhhh-hhhHH-HHH
Confidence 6889988774 455555433 456778999999999999999997 33444411 11110 00111 111
Q ss_pred HHHHccCCCCCCCChHHHHHHHHHHc--CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEE--cCchh--hHhH
Q 000782 244 ILESLGESCGHITQLEPLQSALKRKL--TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVT--TRSEN--VAQI 317 (1287)
Q Consensus 244 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvT--tR~~~--v~~~ 317 (1287)
......+.+ .+++.+||+||++.-....++.+...+. .|+.++|+ |.+.. +...
T Consensus 96 -----------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 96 -----------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -----------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 111121111 2467899999997655555555554433 35555553 44331 2111
Q ss_pred h-cCcCeEEccCCChhhHHHHHHHHHcCCC---CCCCCchhhHHHHHHHhhcCCchh
Q 000782 318 V-GTVPVFHLQELSDNDCWSLFAQHAFSKL---NPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 318 ~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~---~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
. .....+.+++++.++...++.+.+-... ......-..+....|++.+.|..-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1 2346799999999999999987653100 001112335567788888888643
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.5e-05 Score=92.17 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=109.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|++..++.+.+++..+ .-.+.+.++|+.|+||||+|+.+++...-.. |... .....-...+.+..
T Consensus 17 dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 7899999999999988654 2346788999999999999999986321111 1110 00001111111111
Q ss_pred HccCC-----CCCCCChHHHHH---HHHHH-cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc-CchhhHh
Q 000782 247 SLGES-----CGHITQLEPLQS---ALKRK-LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT-RSENVAQ 316 (1287)
Q Consensus 247 ~l~~~-----~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v~~ 316 (1287)
..... .......++... .+... ..+++-++|+|++..-....+..+...+......+.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 00000 000011222111 11110 12234469999997665566777777665544455555544 4444433
Q ss_pred H-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHHh
Q 000782 317 I-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALGG 377 (1287)
Q Consensus 317 ~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 377 (1287)
. ...+..+++.++++++....+...+-..+. ....+.+..+++.++|.+- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 234568999999999999888876632211 1224567889999999664 5544443
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=1.5e-05 Score=85.42 Aligned_cols=153 Identities=19% Similarity=0.130 Sum_probs=89.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
..+.+.|+|.+|+|||+||+.+++... .... ..++++..... .. + ....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~~- 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFDP- 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhcc-
Confidence 346789999999999999999987421 1111 33444443211 00 0 1111
Q ss_pred CeEEEEEeCCCCCChhhHhHhcccCCC-CCCCc-EEEEEcCchhhH--------hHhcCcCeEEccCCChhhHHHHHHHH
Q 000782 272 KRYLLVLDDLWGENYNEWEVLQLPFRG-GAHGS-KIIVTTRSENVA--------QIVGTVPVFHLQELSDNDCWSLFAQH 341 (1287)
Q Consensus 272 k~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs-~ilvTtR~~~v~--------~~~~~~~~~~l~~L~~~~a~~lf~~~ 341 (1287)
..-+||+||+..-+...-..+...+.. ...+. .||+|++..... ..+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 234788999954332222333333322 11233 467776643221 12233468999999998877777664
Q ss_pred HcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 342 AFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
+-... ..-.+++.+.+++.+.|.+..+..+...+
T Consensus 170 ~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 42211 12335678889999999999887776665
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.1e-05 Score=90.00 Aligned_cols=179 Identities=19% Similarity=0.136 Sum_probs=112.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccc------cc-------------ccccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDE------KV-------------NDHFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~------~~-------------~~~f~~~~ 227 (1287)
++||.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.. .. .+.+..++
T Consensus 14 dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 7899999999888887654 234578899999999999999887521 00 01122233
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV 307 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 307 (1287)
.+..+....+.+ .+++++..... -..+++-++|+|++..-.......+...+....+.+++|+
T Consensus 89 eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 89 EIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 343333223222 22232221100 0134566899999976655667777777766556676666
Q ss_pred EcC-chhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhH
Q 000782 308 TTR-SENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 308 TtR-~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
+|. ...+...+ .....+++++++.++..+.+.+.+...+. ....+.+..|++.++|.+-.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 554 34444333 34578999999999999999887743221 23345677899999987753
No 98
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=5.5e-08 Score=102.24 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=63.4
Q ss_pred CccEEEeeCCCCCCcC---CCCcCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcc--
Q 000782 1092 TLQHLKISNCPNLNFL---PAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLIS-- 1166 (1287)
Q Consensus 1092 ~L~~L~ls~~~~l~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~-- 1166 (1287)
.|+.+.++.|.+...- -...|..+++|++|||.+|-++.--...+ ...+..+++|++|++++|..-..
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-------akaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-------AKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-------HHHhcccchheeecccccccccccH
Confidence 5666666665432110 01125667777777777776653221111 12233456677777777766542
Q ss_pred --ccccc-CCCCCcceEEeccCCCccccCC-----CCCCCCcceEEEecCCC
Q 000782 1167 --LPDDL-YNFICLDKLLISNCPKLVSFPA-----GGLPPNLKSLSISDCEN 1210 (1287)
Q Consensus 1167 --~~~~~-~~l~~L~~L~Ls~n~~~~~~~~-----~~~~~~L~~L~Ls~n~~ 1210 (1287)
+...+ ...|+|+.|.+.+|.++..-.. ....+.|+.|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11222 2467888888888877643211 13467888888888887
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=2.2e-06 Score=105.41 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=67.9
Q ss_pred cceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecCCCCcccccccCCCCCcceEEeccCCCccccCCC-CC
Q 000782 1118 LECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG-GL 1196 (1287)
Q Consensus 1118 L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~ 1196 (1287)
++.|+|++|.++...+.. +..+++|+.|++++|.....+|..+..+++|+.|+|++|++.+.+|.. ..
T Consensus 420 v~~L~L~~n~L~g~ip~~-----------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-----------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEECCCCCccccCCHH-----------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 677777777776432221 123556666777666666666666666677777777777666666653 56
Q ss_pred CCCcceEEEecCCCCCcCcccCCCC-CCcCeEeeccCCCCcC
Q 000782 1197 PPNLKSLSISDCENLVTLPNQMQSM-TSLQDLTISNCIHLES 1237 (1287)
Q Consensus 1197 ~~~L~~L~Ls~n~~~~~~~~~l~~l-~~L~~L~l~~n~~l~~ 1237 (1287)
+++|+.|+|++|++.+.+|..+..+ .++..+++.+|+.+..
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 6667777777766666666665442 3555666666665443
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.7e-05 Score=92.06 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=110.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc--ceeEEEEecCCCCHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF--ELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 244 (1287)
++||-+..++.|.+++... .-.+.+.++|..|+||||+|+.+++...-.... ....+ .....-...+.|
T Consensus 17 dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 7899999999999988654 234677899999999999999986521110000 00000 000000111111
Q ss_pred HHHc-----cCCCCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc-Cchhh
Q 000782 245 LESL-----GESCGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT-RSENV 314 (1287)
Q Consensus 245 ~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v 314 (1287)
-..- ..........++..+.+... ..++.-++|+|+|+......+..+...+.......++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 00000011222222222111 13455689999998777677777777776655566666555 43444
Q ss_pred HhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 315 AQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 315 ~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
... ......+++++++.++..+.+.+.+...+- ....+....|++.++|.+--+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 322 234578999999999999988877633211 123456788999999877443
No 101
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=6e-05 Score=87.36 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=109.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc--------------------ccccee
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN--------------------DHFELK 226 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~ 226 (1287)
+++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.++....-. .+++.
T Consensus 15 ~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 6899999999999988654 234678899999999999999887631100 02221
Q ss_pred EEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEE
Q 000782 227 AWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKII 306 (1287)
Q Consensus 227 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 306 (1287)
+++........ +..+++++.+... -..+++-++|+|++..-.......+...+......+.+|
T Consensus 89 ~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 89 IEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 22222111111 1112222221100 012455588999985544445666666665544566666
Q ss_pred EEcCchh-hHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 307 VTTRSEN-VAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 307 vTtR~~~-v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
++|.+.. +...+ .....+++.++++++..+.+...+-..+. .-.++.+..+++.++|.|..+...
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHH
Confidence 6665443 32222 23467899999999999988887633221 122467888999999988655443
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.1e-05 Score=91.81 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=110.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc-------------------cccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN-------------------DHFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 227 (1287)
++||-+..++.|..++... .-.+.+.++|+.|+||||+|+.+++..--. +.|..++
T Consensus 17 divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 7899999999999999654 234567899999999999999988732111 1122233
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV 307 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 307 (1287)
.+..+....++++ +++++.+.. .-..++.-++|+|+|..-.......+...+......+++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3332222222221 222222111 01135666899999977666677777776666555676666
Q ss_pred EcCc-hhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 308 TTRS-ENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 308 TtR~-~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
+|.+ ..+...+ .....+++++++.++....+.+.+-..+ .....+....|++.++|.+--+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg----i~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN----VEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCcHHHH
Confidence 5543 3333222 2346789999999998887776653221 1123455678899999977533
No 103
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=2.4e-05 Score=82.69 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=88.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
.+.+.|+|.+|+|||+|++.++... . ..+++.. .+..+++..+ . +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~~~~-----------------~----~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAANAA-----------------A----E- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHHHhh-----------------h----c-
Confidence 3678999999999999999988632 1 1233221 1111111111 1 1
Q ss_pred eEEEEEeCCCCC--ChhhHhHhcccCCCCCCCcEEEEEcCc---------hhhHhHhcCcCeEEccCCChhhHHHHHHHH
Q 000782 273 RYLLVLDDLWGE--NYNEWEVLQLPFRGGAHGSKIIVTTRS---------ENVAQIVGTVPVFHLQELSDNDCWSLFAQH 341 (1287)
Q Consensus 273 ~~LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~lf~~~ 341 (1287)
-+|++||+... +...+-.+...+. ..|..||+|++. ++...++.....++++++++++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999432 1222222222222 236679998873 344555566788999999999999999988
Q ss_pred HcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHh
Q 000782 342 AFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGG 377 (1287)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 377 (1287)
+-... -.--+++..-|++++.|..-++..+-.
T Consensus 166 ~~~~~----~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQ----LYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcC----CCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 74321 123356788889988887776654333
No 104
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.11 E-value=5.4e-06 Score=91.31 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=65.5
Q ss_pred HHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC--CHHHHHHHHHHHccCCCCC
Q 000782 177 KLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF--DLVKVTKAILESLGESCGH 254 (1287)
Q Consensus 177 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 254 (1287)
++++.+..- +.-+...|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.+...+-....+
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455655443 344678899999999999999999964433 89999999999887 6778888776332222211
Q ss_pred CCChHHH------HHHHHHH-cCCCeEEEEEeCC
Q 000782 255 ITQLEPL------QSALKRK-LTLKRYLLVLDDL 281 (1287)
Q Consensus 255 ~~~~~~~------~~~l~~~-l~~k~~LlVlDdv 281 (1287)
.....+. ...-+.+ -.+++++|++|++
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 1111111 1111111 3689999999999
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.5e-05 Score=89.42 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=111.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEe-cCCCCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFV-SDEFDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 245 (1287)
+++|.+..++.|..++..+ .-.+.+.++|++|+||||+|+.+++...-...++...|..- ......-...+.+.
T Consensus 17 eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 7899999999998888654 23355789999999999999998873211111111001000 00000001111111
Q ss_pred HHccCC-----CCCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc-Cchhh
Q 000782 246 ESLGES-----CGHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT-RSENV 314 (1287)
Q Consensus 246 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v 314 (1287)
...... .......+++.+ +.+.+ .+++-++|+|++..-....+..+...+....+.+.+|++| +...+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 000000 001111233222 22222 3456688999997655567777777776655566666555 44444
Q ss_pred HhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHH
Q 000782 315 AQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALG 376 (1287)
Q Consensus 315 ~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 376 (1287)
.... .....+++.++++++..+.+...+-..+ ..-..+.+..|++.++|.+- |+..+-
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3322 2335789999999999888887663211 12335678899999999774 444433
No 106
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.3e-08 Score=100.12 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccC---CccCcCCcceEEeccCccccccCCCcccCCCCcccE
Q 000782 996 LLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP---EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEF 1072 (1287)
Q Consensus 996 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~ 1072 (1287)
.|+.|.+.++...+.+...+..-.+|+.|+|+.|.-.+... .+..++.|+.|+++.|.............
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h------- 283 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH------- 283 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh-------
Confidence 45555555555555454555555666666666665544433 34556666666666665544332211111
Q ss_pred EEEcCCCCCCcCCCCCCCCCccEEEeeCCCCCCcC--CCCcCCCCCCcceEEecCc-cCCcccccccccCccccCCCCCC
Q 000782 1073 FELDGCSSLISFPDGELPLTLQHLKISNCPNLNFL--PAGLLHKNTCLECLQISGC-SLNSFPVICSSNLSSLSASSPKS 1149 (1287)
Q Consensus 1073 L~l~~c~~l~~~~~~~~~~~L~~L~ls~~~~l~~~--~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~l~~~~~~~ 1149 (1287)
..++|+.|++++|...-.. -..+...+++|.+||||+| .++. +++ ..+..
T Consensus 284 ----------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~--------~~~~k 336 (419)
T KOG2120|consen 284 ----------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCF--------QEFFK 336 (419)
T ss_pred ----------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc---hHH--------HHHHh
Confidence 1124455555544221000 0012234555666666655 2221 111 11223
Q ss_pred CCCcceeEEecCCCCc-ccccccCCCCCcceEEeccC
Q 000782 1150 SSRLKMLEICNCMDLI-SLPDDLYNFICLDKLLISNC 1185 (1287)
Q Consensus 1150 ~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~n 1185 (1287)
+..|++|.++.|..+. ..--.+...|+|.+|++.+|
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4556666666666543 11113456778888888776
No 107
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=8.1e-05 Score=82.16 Aligned_cols=212 Identities=16% Similarity=0.119 Sum_probs=126.9
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
..++||+.|++.+..++....+ ....+-+.|.|.+|.|||.+...++.+..-...=..++++.+-.-....+++..|.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 3789999999999999876532 34567889999999999999999997532222113456666665566777888887
Q ss_pred HHccCCCCCCCChHHHHHHHHHHcCC--CeEEEEEeCCCCCChhhHhHhcccCCC-CCCCcEEEEEcCch--h----hHh
Q 000782 246 ESLGESCGHITQLEPLQSALKRKLTL--KRYLLVLDDLWGENYNEWEVLQLPFRG-GAHGSKIIVTTRSE--N----VAQ 316 (1287)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilvTtR~~--~----v~~ 316 (1287)
..+...........+.+..+.++..+ +.+|+|+|....-.-..-..+...|.+ .-+++|+|+.---. + ...
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 77622221122224455566666543 368999998833211111222222322 23566665532211 0 111
Q ss_pred Hh-----cCcCeEEccCCChhhHHHHHHHHHcCCCCC-CCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 317 IV-----GTVPVFHLQELSDNDCWSLFAQHAFSKLNP-EARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 317 ~~-----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
.. .....+..+|.+.++-.++|..+.-..... ..+...+-.|++++.-.|.+--|+.+.-+.+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 134578899999999999999887433221 2223444555555555566666666665544
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=6.5e-05 Score=80.21 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=93.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.|+|..|+|||.|++++++. ....-..++|++..+ +... . ..+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999999873 222223456666532 1110 0 1222223222
Q ss_pred eEEEEEeCCCCCC-hhhHhH-hcccCCC-CCCCcEEEEEcCchh---------hHhHhcCcCeEEccCCChhhHHHHHHH
Q 000782 273 RYLLVLDDLWGEN-YNEWEV-LQLPFRG-GAHGSKIIVTTRSEN---------VAQIVGTVPVFHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 273 ~~LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~lf~~ 340 (1287)
. +||+||+.... ...|+. +...+.. ...|..||+|++... ...++.....++++++++++-.++++.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67889995321 134443 3333221 124667899887532 223333456799999999999999997
Q ss_pred HHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 341 HAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
++.... -.-.+++..-|++++.|..-++..+-..|
T Consensus 178 ka~~~~----~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG----LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 664321 11235778889999988776655544444
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=8e-05 Score=89.59 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=112.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccc--eeEEEEecCCCCHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFE--LKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i 244 (1287)
+++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++......... ...+-.++. -.-.+.|
T Consensus 25 dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i 95 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAI 95 (598)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHH
Confidence 7999999999999988654 3345788999999999999999987321111000 000000000 0111111
Q ss_pred HHHccCC-----CCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc-Cchhh
Q 000782 245 LESLGES-----CGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT-RSENV 314 (1287)
Q Consensus 245 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v 314 (1287)
.+....+ .......+++...+... ..+++-++|+|++..........+...+.....++.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 1111000 00111222222211111 12455678999996665556667777666555566665544 44444
Q ss_pred HhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHH
Q 000782 315 AQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKA 374 (1287)
Q Consensus 315 ~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 374 (1287)
...+ ..+..+++.+++.++....+.+.+-.... ....+.+..|++.++|.+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3332 24568999999999999999887632211 12346778899999998865433
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=7.2e-07 Score=104.91 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=58.7
Q ss_pred CCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEe
Q 000782 572 NFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDI 651 (1287)
Q Consensus 572 ~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l 651 (1287)
.+..+..+++..|.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|.+... . .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-c-chhhccchhhhee
Confidence 4455556667777776655557777778888888887777755577777777777777754333 2 2666666777777
Q ss_pred cCCccccC
Q 000782 652 RGCNLQQL 659 (1287)
Q Consensus 652 ~~n~l~~l 659 (1287)
++|.+..+
T Consensus 148 ~~N~i~~~ 155 (414)
T KOG0531|consen 148 SGNLISDI 155 (414)
T ss_pred ccCcchhc
Confidence 77776655
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.4e-05 Score=88.85 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=109.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc-------------------cccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN-------------------DHFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~ 227 (1287)
+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-. +.|...+
T Consensus 17 divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 6899999999999988654 234567899999999999999987632111 0111122
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV 307 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv 307 (1287)
++..+....++ ..+++++.+.. .-..+++-++|+|++..-.......+...+......+.+|+
T Consensus 92 ei~~~~~~~vd-~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 92 EVDAASNTQVD-AMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred EeeccccCCHH-HHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 22221111111 11222221110 01135667999999976655566667666665445566665
Q ss_pred EcCc-hhhHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHH
Q 000782 308 TTRS-ENVAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALG 376 (1287)
Q Consensus 308 TtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 376 (1287)
+|.+ +.+... ...+..+++++++.++..+.+.+.+-..+ ....++.+..|++.++|.+- |+..+-
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg----i~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN----IPFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5543 333322 12346789999999999988877653221 11234566889999999774 444443
No 112
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=0.00011 Score=78.28 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=119.0
Q ss_pred hhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc----cccceeEEEEecCCCCHHHHHHHHHHHc
Q 000782 173 EDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN----DHFELKAWAFVSDEFDLVKVTKAILESL 248 (1287)
Q Consensus 173 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 248 (1287)
+.++++.+++..+ ...+...+.|||.+|+|||++++++.+..-.. ..--.++.|.+...++...++..|++++
T Consensus 44 ~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 4456666666544 34566789999999999999999998632111 1112577788889999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHcCC-CeEEEEEeCCCCC---ChhhHhH---hcccCCCCCCCcEEEEEcCchhhHhHh---
Q 000782 249 GESCGHITQLEPLQSALKRKLTL-KRYLLVLDDLWGE---NYNEWEV---LQLPFRGGAHGSKIIVTTRSENVAQIV--- 318 (1287)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~---~~~~l~~~~~gs~ilvTtR~~~v~~~~--- 318 (1287)
+.+.........+.......++. +-=+||+|.+.+- ...+-.. ....+.+.-.-+-|.|-|+...-+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 99876666666666555555543 3458899999542 1111122 223333333345566666643222111
Q ss_pred --cCcCeEEccCCChh-hHHHHHHHHHc--CCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 319 --GTVPVFHLQELSDN-DCWSLFAQHAF--SKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 319 --~~~~~~~l~~L~~~-~a~~lf~~~a~--~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
+...++.++.-..+ +...|+..... .-.. ...-...+++..|...++|+.=-+
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 12346667666554 44555543221 1111 112245688999999999976433
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=2.1e-06 Score=100.92 Aligned_cols=104 Identities=25% Similarity=0.326 Sum_probs=85.5
Q ss_pred HhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceE
Q 000782 569 LLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRF 648 (1287)
Q Consensus 569 ~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 648 (1287)
.+..+++|..|++.+|.|..+...+..+++|++|+|++|.|+.+ ..+..|..|+.|++++|.+ ..++ .+..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i-~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLI-SDIS-GLESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcc-hhcc-CCccchhhhc
Confidence 35788999999999999999877689999999999999999998 4588889999999999964 3343 3677999999
Q ss_pred EEecCCccccCCcC-CCCCCCCCccCce
Q 000782 649 LDIRGCNLQQLPPH-MGGLKNLRTLPSF 675 (1287)
Q Consensus 649 L~l~~n~l~~lp~~-i~~L~~L~~L~~~ 675 (1287)
+++++|.+..+... ...+.+|+.+.+.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 99999998887654 4666677766443
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00015 Score=86.10 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=112.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++...-....+. ..+..-...+.+..
T Consensus 17 dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 6889998888888888654 22467788999999999999998874211110000 00000011111110
Q ss_pred HccCC-----CCCCCChHHHHHHHHHH-----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhH
Q 000782 247 SLGES-----CGHITQLEPLQSALKRK-----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVA 315 (1287)
Q Consensus 247 ~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~ 315 (1287)
..... .......+... .+.+. ..+++-+||+|++..-....+..+...+........+|++|.. ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00000 00001112111 12221 2356679999999766556667777766544345556555544 4444
Q ss_pred hHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch-hHHHHHHhhh
Q 000782 316 QIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP-LAAKALGGLL 379 (1287)
Q Consensus 316 ~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 379 (1287)
..+ .....+++++++.++..+.+...+..... ....+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 23467899999999999988876643221 123467788999999965 6777776544
No 115
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.5e-06 Score=61.08 Aligned_cols=38 Identities=37% Similarity=0.586 Sum_probs=18.7
Q ss_pred cccEEEecCCCCcccCccccCCCccceEecCCCCCccc
Q 000782 575 RLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSL 612 (1287)
Q Consensus 575 ~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~l 612 (1287)
+|++|++++|+|+.+|..+++|++|++|++++|.|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555554455555555555555555443
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00014 Score=84.21 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=106.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc------ccccceeEE-EEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV------NDHFELKAW-AFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~------~~~f~~~~w-v~~~~~~~~~~ 239 (1287)
+++|.+..++.+.+.+... .-.+.+.++|++|+||||+|+.+++.... ...|...+. +........ +
T Consensus 18 ~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 91 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-D 91 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-H
Confidence 6899999999999988654 23468889999999999999999773111 011211111 111111111 1
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc-CchhhHhHh
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT-RSENVAQIV 318 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v~~~~ 318 (1287)
..+.+++++... -..+++-++|+|++.......+..+...+......+.+|++| ....+....
T Consensus 92 ~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 92 DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 112222221100 012345579999985544445666655554433445555554 433333222
Q ss_pred -cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHH
Q 000782 319 -GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALG 376 (1287)
Q Consensus 319 -~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 376 (1287)
.....++++++++++....+...+...+- .-..+.++.|++.++|.+- |+..+-
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23457999999999999888887643221 1234678889999998654 444443
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00015 Score=87.46 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=109.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc---c----ceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH---F----ELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---f----~~~~wv~~~~~~~~~~ 239 (1287)
+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--... + .|... ....++.
T Consensus 19 dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~--~~~~~Dv-- 89 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN--VNNSLDI-- 89 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh--hcCCCcE--
Confidence 7899999999999988654 23466789999999999999998763111000 0 00000 0000000
Q ss_pred HHHHHHHHccCCCCCCCChH---HHHHHHHHH-cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEE-EEcCchhh
Q 000782 240 VTKAILESLGESCGHITQLE---PLQSALKRK-LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKII-VTTRSENV 314 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtR~~~v 314 (1287)
+..........+ ++...+... ..+++-++|+|++..-....+..+...+......+.+| +||+...+
T Consensus 90 --------ieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 90 --------IEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred --------EEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 000000001122 122221111 13566689999997666667777777666544455544 45555555
Q ss_pred HhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHH
Q 000782 315 AQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALG 376 (1287)
Q Consensus 315 ~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 376 (1287)
... ...+..+++.+++.++..+.+...+-..+- ....+.+..|++.++|.+- |+..+.
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 433 234578999999999999888876532211 1224567889999998664 444443
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.99 E-value=0.00023 Score=73.53 Aligned_cols=175 Identities=22% Similarity=0.241 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
++|||.++.++.+.=.+... ...+....-+.++|++|.||||||.-+++ +....+.. +.+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AA-k~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~----tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAA-KKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI----TSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHH-HhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe----cccccccChhhHHHHH
Confidence 38999999888887666543 22345677899999999999999999998 44433321 1111111112222333
Q ss_pred HHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCC--------CCCCCcE-----------EE
Q 000782 246 ESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFR--------GGAHGSK-----------II 306 (1287)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~--------~~~~gs~-----------il 306 (1287)
..+.. .=++.+|.++.-....-+.+-.++. ..++++| |=
T Consensus 99 t~Le~----------------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNLEE----------------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcCCc----------------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 33222 1133445543332211111111111 1122333 33
Q ss_pred EEcCchhhHhHhc--CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 307 VTTRSENVAQIVG--TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 307 vTtR~~~v~~~~~--~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
-|||.-.+..... -..+.+++-.+.+|-.++..+.|..-. -+..++.+.+|+++..|-|--..
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHH
Confidence 4888655443332 124678999999999999998873221 22345678999999999996443
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00013 Score=87.97 Aligned_cols=201 Identities=13% Similarity=0.110 Sum_probs=111.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE-ecCCCCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF-VSDEFDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 245 (1287)
++||.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++...-...++.-.|.. +......-...+.+.
T Consensus 17 eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 7899999999999888654 2345688999999999999998876321111111001110 000000001111111
Q ss_pred HHccCC-----CCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE-EcCchhhH
Q 000782 246 ESLGES-----CGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV-TTRSENVA 315 (1287)
Q Consensus 246 ~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~ 315 (1287)
..-... .......+++...+... ..+++-++|+|++..-.....+.+...+......+.+|+ |++...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 000000 00111123333222221 234455789999976655566777777766545555554 54444444
Q ss_pred hHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHH
Q 000782 316 QIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALG 376 (1287)
Q Consensus 316 ~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 376 (1287)
..+ .....+++.+++.++....+.+.+-..+ ..-..+.++.|++.++|..- |+..+-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg----i~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEG----IQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 332 3467899999999998888877653211 11234678889999999554 444443
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00013 Score=90.99 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=109.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc---------------------ce
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF---------------------EL 225 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~~ 225 (1287)
++||.+..++.|..++... .-.+.+.++|..|+||||+|+.+++...-.... ..
T Consensus 16 eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 7899999999999998654 234567899999999999999987642111100 00
Q ss_pred eEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHH-----HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCC
Q 000782 226 KAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKR-----KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGA 300 (1287)
Q Consensus 226 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~ 300 (1287)
++++..... ..++++.. +++ -..+++-++|+|++.......+..+...+....
T Consensus 91 v~eidaas~---------------------~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 91 VTEIDAASH---------------------GGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred EEEeccccc---------------------CCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 111211111 11222221 211 123556688999997777777778887777655
Q ss_pred CCcEEEEEcC-chhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhH
Q 000782 301 HGSKIIVTTR-SENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 301 ~gs~ilvTtR-~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
..+.+|++|. ...+...+ ..+..|++..++.++..+.+.+.+-... .....+....|++.++|.+..
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG----v~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG----VPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHH
Confidence 5666665554 44444333 3457899999999999888877652211 112344567899999998743
No 121
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=5.6e-05 Score=87.09 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=98.2
Q ss_pred ccccchhhHHHHHHHHhcCccc-------CCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEA-------TDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++.|+++.++++.+.+...... +-...+-+.++|++|+|||++|+++++ .....| +.+.. ..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----SE 191 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----HH
Confidence 7899999999998877422100 112345688999999999999999998 333333 22211 11
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHH-HcCCCeEEEEEeCCCCC-----------Chhh---HhHhcccCC--CCCCC
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKR-KLTLKRYLLVLDDLWGE-----------NYNE---WEVLQLPFR--GGAHG 302 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----------~~~~---~~~~~~~l~--~~~~g 302 (1287)
+..... + ........+.+ .-...+.+|++||++.- +... +..+...+. ....+
T Consensus 192 l~~~~~---g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 192 LVRKYI---G-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHhh---h-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 111110 0 01111112222 22346789999998532 1111 112221121 11246
Q ss_pred cEEEEEcCchhhHh-Hh----cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch
Q 000782 303 SKIIVTTRSENVAQ-IV----GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP 369 (1287)
Q Consensus 303 s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (1287)
.+||.||....... .+ .-...+.++..+.++..++|..++.+..... ... ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 67888887543221 11 1235789999999999999998875433211 112 356777777654
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.0002 Score=85.70 Aligned_cols=197 Identities=13% Similarity=0.083 Sum_probs=112.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++...-....+ +-.++. -...+.+..
T Consensus 14 eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~----C~~C~~i~~ 81 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGV----CESCVALAP 81 (584)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccc----cHHHHHhhc
Confidence 7899999999999998654 2345678999999999999999886321100000 000000 000111100
Q ss_pred H-------ccCCCCCCCChHHH---HHHHHHH-cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEc-Cchhh
Q 000782 247 S-------LGESCGHITQLEPL---QSALKRK-LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTT-RSENV 314 (1287)
Q Consensus 247 ~-------l~~~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-R~~~v 314 (1287)
. +..........++. .+.+... ..+++-++|+|++..-.......+...+........+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 00000000112221 1111111 13456688999997776677777777776655566655544 44444
Q ss_pred HhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh-HHHHHHhhh
Q 000782 315 AQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL-AAKALGGLL 379 (1287)
Q Consensus 315 ~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 379 (1287)
...+ .....+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+- |+..+-..+
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 34578999999999998888876633221 1224566788999999774 555554443
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00024 Score=86.75 Aligned_cols=193 Identities=15% Similarity=0.154 Sum_probs=110.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++||.+..++.|..++... .-.+.+.++|..|+||||+|+.+++......... .......-...+.+..
T Consensus 17 eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 7899999999998888654 2345678999999999999999986321100000 0000111122222222
Q ss_pred HccCC-----CCCCCChHHHHHHHHHH-----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhH
Q 000782 247 SLGES-----CGHITQLEPLQSALKRK-----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVA 315 (1287)
Q Consensus 247 ~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~ 315 (1287)
..+.. .......+.+.. +.+. ..+++-++|+|++..-.....+.+...+......+.+|++|.. ..+.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 11110 001112222221 1121 1245678999999655545566666666554455666665543 3333
Q ss_pred hHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 316 QIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 316 ~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
..+ .....+.+.+++.++....+...+...+. ....+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 322 23467889999999999888877643221 123467889999999988654433
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.0003 Score=83.03 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=106.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc--c-----------------cccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV--N-----------------DHFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~-----------------~~f~~~~ 227 (1287)
+++|.+..++.+..++... .-.+...++|+.|+||||+|+.++....- . +.|...+
T Consensus 17 diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 6889999999999988654 23456678999999999999998763110 0 0011112
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHH-HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEE
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKR-KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKII 306 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 306 (1287)
++..+...... +...+...+.. -..+++-++|+|++..-.......+...+........+|
T Consensus 92 eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 22111111111 11111111111 113566799999996655555666666665544455555
Q ss_pred EEc-CchhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHH
Q 000782 307 VTT-RSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKA 374 (1287)
Q Consensus 307 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 374 (1287)
++| +...+.... .....+.+.+++.++....+.+.+-..+- ....+.+..|++.++|.+-.+..
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 544 443443322 24467999999999998888876632221 12345677889999997654433
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=6.5e-05 Score=79.11 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=93.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhccccccccc--ceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF--ELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
....+.|+|..|+|||.|.+++++. ..+.. ..++++++ .+....+...+.. ... ..+++.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~~~~~~~~~-----~~~----~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIREFADALRD-----GEI----EEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHHHHHHHHHT-----TSH----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHHHHHHHHHc-----ccc----hhhhhhh
Confidence 3456889999999999999999983 33322 13445443 3455555554432 112 2344444
Q ss_pred CCCeEEEEEeCCCCCCh-hhHhH-hcccCCC-CCCCcEEEEEcCch---------hhHhHhcCcCeEEccCCChhhHHHH
Q 000782 270 TLKRYLLVLDDLWGENY-NEWEV-LQLPFRG-GAHGSKIIVTTRSE---------NVAQIVGTVPVFHLQELSDNDCWSL 337 (1287)
Q Consensus 270 ~~k~~LlVlDdv~~~~~-~~~~~-~~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~l 337 (1287)
++ -=+|++||++.-.. ..|.. +...+.. ...|-+||+|++.. +...++...-.++++++++++-.++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 33788999955322 22332 2222211 12466899999643 2334445667899999999999999
Q ss_pred HHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHH
Q 000782 338 FAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALG 376 (1287)
Q Consensus 338 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 376 (1287)
+.+.+-...- .--+++++-|++++.+..-.+.-+-
T Consensus 175 l~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 175 LQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9998853322 1335677778888776655554433
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.00013 Score=85.62 Aligned_cols=170 Identities=11% Similarity=0.048 Sum_probs=102.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.|+|..|+|||.|++++++.......-..+++++. .++...+...+.... .....+++.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 456899999999999999999873211111123344433 356666666554210 122334444443
Q ss_pred eEEEEEeCCCCCC--hhhHhHhcccCCC-CCCCcEEEEEcCch---------hhHhHhcCcCeEEccCCChhhHHHHHHH
Q 000782 273 RYLLVLDDLWGEN--YNEWEVLQLPFRG-GAHGSKIIVTTRSE---------NVAQIVGTVPVFHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 273 ~~LlVlDdv~~~~--~~~~~~~~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~lf~~ 340 (1287)
.-+||+||+.... ....+.+...+.. ...|..||+|+... .+..++...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3478899995432 1122333332221 12345688887642 2333444556788999999999999998
Q ss_pred HHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhh
Q 000782 341 HAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGL 378 (1287)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 378 (1287)
.+-..+- ...-.+++..-|++.++|.|-.+.-+...
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8743211 01244678899999999999777655443
No 127
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=3.5e-06 Score=86.50 Aligned_cols=81 Identities=27% Similarity=0.284 Sum_probs=44.5
Q ss_pred cccEEEecCCCCcccC--ccc-cCCCccceEecCCCCCcc---cchhhhcccCccEEeecCcccccccCCCC-CCCCCce
Q 000782 575 RLRVLSLSHYEIVELP--DLI-GDLKHLRYLDLSNTSIKS---LPESIAALYNLQTLILYSCRYLIQLPKHM-GDLFNLR 647 (1287)
Q Consensus 575 ~Lr~L~L~~~~i~~lp--~~~-~~l~~Lr~L~Ls~n~i~~---lp~~i~~L~~L~~L~L~~n~~~~~lp~~~-~~L~~L~ 647 (1287)
-+..|.+.++.|...- ..| ....+++.|||.+|.|+. +-.-+.+|+.|++|+|+.|.....+ +.. ..+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceE
Confidence 3445556666655432 223 234567777777777763 3334456777777777776532211 111 3455677
Q ss_pred EEEecCCcc
Q 000782 648 FLDIRGCNL 656 (1287)
Q Consensus 648 ~L~l~~n~l 656 (1287)
+|-|.|..+
T Consensus 125 ~lVLNgT~L 133 (418)
T KOG2982|consen 125 VLVLNGTGL 133 (418)
T ss_pred EEEEcCCCC
Confidence 777776653
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00032 Score=82.51 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=110.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc--ccc----------------cc-eeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV--NDH----------------FE-LKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~----------------f~-~~~ 227 (1287)
+++|-+...+.+...+... .-.++..++|+.|+||||+|+.+++..-- ... +. .++
T Consensus 15 eiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 7899999999999988654 23456789999999999999987763110 000 00 111
Q ss_pred EEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHH--H--cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCc
Q 000782 228 WAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKR--K--LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGS 303 (1287)
Q Consensus 228 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~--l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 303 (1287)
.+...... ..+.+...+.. + ..+++-++|+|++..........+...+......+
T Consensus 90 eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 90 EMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred Eecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 11111111 12222222211 0 12456688999997766666777777666555567
Q ss_pred EEEEEcCch-hhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHH
Q 000782 304 KIIVTTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKA 374 (1287)
Q Consensus 304 ~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 374 (1287)
++|++|.+. .+.... .....+++.+++.++..+.+.+.+-..+ ....++.++.|++.++|.+--+..
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG----i~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG----VSYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCcHHHHHH
Confidence 777666553 222211 2356899999999999988877663221 122356788999999998854433
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=0.0001 Score=93.23 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=94.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc------cceeEE-EEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH------FELKAW-AFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~~ 239 (1287)
+++||+.++++++..|... ...-+.++|.+|+||||+|+.+++. +... ....+| +..+.-
T Consensus 188 ~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l----- 254 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL----- 254 (852)
T ss_pred cccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh-----
Confidence 7899999999999998654 3345569999999999999999873 2211 122333 222210
Q ss_pred HHHHHHHHccCCCCCCCChH-HHHHHHHHHc-CCCeEEEEEeCCCCCC-------hhhHhH-hcccCCCCCCCcEEEEEc
Q 000782 240 VTKAILESLGESCGHITQLE-PLQSALKRKL-TLKRYLLVLDDLWGEN-------YNEWEV-LQLPFRGGAHGSKIIVTT 309 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-~~~~l~~~~~gs~ilvTt 309 (1287)
........+.+ .+...+.+.- .+++.+|++|++..-. ..+-.. +...+..+ .-++|-||
T Consensus 255 ---------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaT 323 (852)
T TIGR03345 255 ---------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAAT 323 (852)
T ss_pred ---------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEec
Confidence 00000001111 1122222221 2468999999984421 111112 22222222 34566666
Q ss_pred CchhhHhHh-------cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCc
Q 000782 310 RSENVAQIV-------GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGL 368 (1287)
Q Consensus 310 R~~~v~~~~-------~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (1287)
...+..... .....+.+++++.++..+++....-.-..........+....+++.+.+.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 654321111 23468999999999999998654321111011122344555666666543
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00025 Score=83.14 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=107.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc---------------------cccce
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN---------------------DHFEL 225 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~~ 225 (1287)
+++|.+..++.+..++..+ .-.+.+.++|+.|+||||+|+.+++...-. .+++
T Consensus 18 diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 7899999999999988654 234677899999999999999987631110 0111
Q ss_pred eEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEE
Q 000782 226 KAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKI 305 (1287)
Q Consensus 226 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 305 (1287)
.+++........++ .+.+.+.+. ..-..+++-++|+|++..........+...+.....++.+
T Consensus 92 ~~~i~g~~~~gid~-ir~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGASHRGIED-IRQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeeccccCCHHH-HHHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 11111111111111 111111110 0001255678899998554444555566666554446666
Q ss_pred EEEcC-chhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch-hHHHHHH
Q 000782 306 IVTTR-SENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP-LAAKALG 376 (1287)
Q Consensus 306 lvTtR-~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 376 (1287)
|++|. ...+...+ .....+++.++++++....+.+.+-..+ .....+.++.|++.++|.+ .|+..+-
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg----~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG----IETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66553 33333222 2456799999999999888887653211 1123467888999999966 4554443
No 131
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.87 E-value=8.3e-05 Score=77.62 Aligned_cols=189 Identities=20% Similarity=0.194 Sum_probs=115.7
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEE-EEecCCCCHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAW-AFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 244 (1287)
++++|.+..+.-+.+.+... .......+|++|.|||+-|..+++...-.+-|.+++- .++|...... +.++=
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 37899999888888888653 5678899999999999999998874333455665543 2333332211 11100
Q ss_pred HHHccCCCCCCCChHHHHHHHHHHc--CCCe-EEEEEeCCCCCChhhHhHhcccCCCCCCCcEEE-EEcCchhhHhHh-c
Q 000782 245 LESLGESCGHITQLEPLQSALKRKL--TLKR-YLLVLDDLWGENYNEWEVLQLPFRGGAHGSKII-VTTRSENVAQIV-G 319 (1287)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtR~~~v~~~~-~ 319 (1287)
..+.+.+........ ..++ -.+|||++.....+.|..+...+......++.+ ||+--..+...+ .
T Consensus 109 ----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 ----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001111000000000 1123 478899998888889999988887755566654 444433332222 2
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCc-hhHHHHH
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGL-PLAAKAL 375 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 375 (1287)
...-++.++|.+++...-++..+-..+- +...+..+.|++.++|- --|+.++
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 3456899999999999988887743322 23346677899999883 3344433
No 132
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.87 E-value=4.5e-05 Score=84.76 Aligned_cols=90 Identities=18% Similarity=0.118 Sum_probs=62.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC--CCHHHHHHHHHHHccCCCCCCCChH------HHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE--FDLVKVTKAILESLGESCGHITQLE------PLQS 263 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 263 (1287)
.-+.++|+|++|.|||||++.+++... ..+|+..+|+.+.+. .++.++++.++..+-....+..... ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 457899999999999999999998533 337999999999866 6889999998654433222211111 1111
Q ss_pred HHHHH-cCCCeEEEEEeCCC
Q 000782 264 ALKRK-LTLKRYLLVLDDLW 282 (1287)
Q Consensus 264 ~l~~~-l~~k~~LlVlDdv~ 282 (1287)
..+.. -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 11222 36899999999993
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.87 E-value=0.00012 Score=83.01 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=85.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++. .... ...+..+. ... +..+..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l~ 89 (316)
T PHA02544 22 ECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRLT 89 (316)
T ss_pred HhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHHH
Confidence 7899999999999988644 33567888999999999999999873 2222 23334433 111 11111111
Q ss_pred HccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHhHhcccCCCCCCCcEEEEEcCchhh-HhHh-cCcCe
Q 000782 247 SLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGE-NYNEWEVLQLPFRGGAHGSKIIVTTRSENV-AQIV-GTVPV 323 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v-~~~~-~~~~~ 323 (1287)
.+... ....+.+-+||+||+... .......+...+.....++++|+||..... ...+ .....
T Consensus 90 ~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 90 RFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 11000 001134557899999654 222233344334444457788888865431 1111 23346
Q ss_pred EEccCCChhhHHHHHHH
Q 000782 324 FHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 324 ~~l~~L~~~~a~~lf~~ 340 (1287)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777888887766554
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00039 Score=84.49 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=110.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccc---------------------cccccce
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEK---------------------VNDHFEL 225 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~f~~ 225 (1287)
+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.++.... ...+|+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 7899999999999998654 2346688999999999999998776311 0112322
Q ss_pred eEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEE
Q 000782 226 KAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKI 305 (1287)
Q Consensus 226 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 305 (1287)
..+.......+.+ ++++++++... - ..+++=++|+|++..-....+..+...+.....++.+
T Consensus 93 -~~ld~~~~~~vd~-Ir~li~~~~~~---------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 93 -HELDAASNNSVDD-IRNLIEQVRIP---------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred -EEecccccCCHHH-HHHHHHHHhhC---------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 1222221111111 12222221110 0 1234558899999776666777787777665556665
Q ss_pred EE-EcCchhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 306 IV-TTRSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 306 lv-TtR~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
|+ ||+...+...+ ..+..+++.++++++....+.+.+-..+ .....+.+..|++.++|..-
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg----i~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG----ITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHH
Confidence 55 54545554433 3457899999999999988887663321 11234567889999999664
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2e-05 Score=58.14 Aligned_cols=37 Identities=43% Similarity=0.511 Sum_probs=29.1
Q ss_pred CccceEecCCCCCcccchhhhcccCccEEeecCcccc
Q 000782 597 KHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYL 633 (1287)
Q Consensus 597 ~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~ 633 (1287)
++|++|++++|+|+.+|..+++|++|++|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4788889998888888888888888888888888643
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.81 E-value=0.0001 Score=83.56 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=72.0
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++++.++..+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.+++..+..+.+..+-
T Consensus 176 d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r- 246 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR- 246 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC-
Confidence 6788899999999988643 5778899999999999999998544445678899999999888776654321
Q ss_pred HccCCCCCCC-ChHHHHHHHHHHc--CCCeEEEEEeCCCCCC
Q 000782 247 SLGESCGHIT-QLEPLQSALKRKL--TLKRYLLVLDDLWGEN 285 (1287)
Q Consensus 247 ~l~~~~~~~~-~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~ 285 (1287)
....... ......+.+.+.. .++++++|+|++...+
T Consensus 247 ---P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 ---PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ---CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1100000 0111222222222 2478999999995544
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.80 E-value=0.00018 Score=90.55 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=85.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccc---cccccc-ceeEEEEecCCCCHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDE---KVNDHF-ELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~~~ 242 (1287)
+++||+++++++++.|... ...-+.++|++|+|||++|+.+++.. .+...+ +..+|. +. ...+..
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~a 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLLA 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHhh
Confidence 7899999999999988654 23345799999999999999998731 111111 233332 11 111111
Q ss_pred HHHHHccCCCCCCCChHHHHHHHHHHc-CCCeEEEEEeCCCCCC---------hhhHhHhcccCCCCCCCcEEEEEcCch
Q 000782 243 AILESLGESCGHITQLEPLQSALKRKL-TLKRYLLVLDDLWGEN---------YNEWEVLQLPFRGGAHGSKIIVTTRSE 312 (1287)
Q Consensus 243 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilvTtR~~ 312 (1287)
. . ....+.+.....+.+.+ ..++.+|++|++..-. .+.-..+...+..+ .-++|-+|...
T Consensus 252 ----~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~ 321 (731)
T TIGR02639 252 ----G---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE 321 (731)
T ss_pred ----h---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH
Confidence 0 0 00112222233333332 3468899999985210 11112233333221 23455555543
Q ss_pred hhHhH-------hcCcCeEEccCCChhhHHHHHHHHH
Q 000782 313 NVAQI-------VGTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 313 ~v~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
+.... ......+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 1234579999999999999998654
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00067 Score=81.45 Aligned_cols=190 Identities=13% Similarity=0.075 Sum_probs=110.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--...... ..+..-.+- +.+..
T Consensus 17 diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~ 84 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDN 84 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHc
Confidence 7899999999999998654 34467889999999999999999874211100000 000000000 11100
Q ss_pred HccC-----CCCCCCChHHHHHHH---HH-HcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhHh
Q 000782 247 SLGE-----SCGHITQLEPLQSAL---KR-KLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVAQ 316 (1287)
Q Consensus 247 ~l~~-----~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~ 316 (1287)
.-.. ........+...... .. -..+++-++|+|++..-....+..+...+......+.+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 0000 000011222222211 11 12356668999999766666677777777665556666665543 33333
Q ss_pred Hh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 317 IV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 317 ~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
.+ .....+++.+++.++..+.+.+.+...+ ....++.+..|++.++|.+-.+
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg----i~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ----IKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 2456789999999999888887764322 1233567778999999977544
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00068 Score=82.42 Aligned_cols=193 Identities=13% Similarity=0.144 Sum_probs=109.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|.+...+.|..++... .-.+.+.++|..|+||||+|+.+++...-. ..+... ......-...+.+..
T Consensus 17 ~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 17 ELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIAA 86 (620)
T ss_pred hccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHhc
Confidence 6899999999999988654 223567899999999999999998742111 110000 000111112222221
Q ss_pred HccCC-----CCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcC-chhhHh
Q 000782 247 SLGES-----CGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTR-SENVAQ 316 (1287)
Q Consensus 247 ~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR-~~~v~~ 316 (1287)
..... .......+.+.+.+... ..+++-++|+|++..-....+..+...+......+.+|++|. ...+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 11100 00111222222222111 124556889999976665667777777665444555555444 333333
Q ss_pred Hh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 317 IV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 317 ~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
.+ .....+++.+++.++....+...+..... ....+.+..|++.++|.+..+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 24567889999999888877766532211 1223567889999999875443
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=9.2e-06 Score=83.50 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=80.2
Q ss_pred cccccceecccccccccc--cccccCcCCCcEEEeccccCcCCCCcccCCCCCCCeEEEecCCCCCccC--CccCcCCcc
Q 000782 970 SSLRRLAIWKCSISLLWP--EEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAALP--EIDASSSLR 1045 (1287)
Q Consensus 970 ~~L~~L~l~~n~~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~l~~L~ 1045 (1287)
+.++.+|+..|.++.... .....+| .|+.|++++|+....+-..-..+.+|+.|-|.+..+.-... .+..+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 445555555555543211 1112233 56666666665544332222345677777776665533221 345667777
Q ss_pred eEEeccCccccccCC--CcccCCCCcccEEEEcCCCCCCcCC---CCCCCCCccEEEeeCCCCCCcCCCCcCCCCCCcce
Q 000782 1046 YLQIQQCEALRSLPA--GLTCNKNLSLEFFELDGCSSLISFP---DGELPLTLQHLKISNCPNLNFLPAGLLHKNTCLEC 1120 (1287)
Q Consensus 1046 ~L~ls~n~~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~ 1120 (1287)
.|++|.|..-...-. .... -...+..++...|....-.. .+..++++..+.+..||.-+.-....+..++.+-.
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~-~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIED-WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccc-cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 777777732211100 0000 01134444555544221111 12445578888888887655444445566666777
Q ss_pred EEecCccCCc
Q 000782 1121 LQISGCSLNS 1130 (1287)
Q Consensus 1121 L~Ls~n~i~~ 1130 (1287)
|+|+.|+|.+
T Consensus 229 LnL~~~~ids 238 (418)
T KOG2982|consen 229 LNLGANNIDS 238 (418)
T ss_pred hhhccccccc
Confidence 7777777665
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.73 E-value=0.0014 Score=72.06 Aligned_cols=135 Identities=11% Similarity=0.061 Sum_probs=73.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.++|.+|+||||+|+.+++.....+.-...-|+.++. .+ +.....+. ........+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~-----~~~~~~~~l~~a-~-- 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGH-----TAPKTKEVLKKA-M-- 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhcc-----chHHHHHHHHHc-c--
Confidence 34588999999999999999976311111111122454542 12 22222111 011122233332 2
Q ss_pred eEEEEEeCCCCC---------ChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHh--------cCcCeEEccCCChhhHH
Q 000782 273 RYLLVLDDLWGE---------NYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIV--------GTVPVFHLQELSDNDCW 335 (1287)
Q Consensus 273 ~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~a~ 335 (1287)
.-+|++|++..- .......+...+.....+.+||+++....+.... .-...+++++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 248999999531 1112223333444444456777777644332111 12357999999999999
Q ss_pred HHHHHHHc
Q 000782 336 SLFAQHAF 343 (1287)
Q Consensus 336 ~lf~~~a~ 343 (1287)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888764
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.001 Score=74.02 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=112.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc-------------ccccceeEEEEecC
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV-------------NDHFELKAWAFVSD 233 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~ 233 (1287)
+++|.+..++.+...+..+ .-.+..-++|+.|+||+++|..+++..-- ...+....|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 6889999999999988654 23478999999999999999888663110 11223334443210
Q ss_pred CCCHHHHHHHHHHHccC--CCCCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEE
Q 000782 234 EFDLVKVTKAILESLGE--SCGHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKII 306 (1287)
Q Consensus 234 ~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~il 306 (1287)
..+-..+-...++..+. .....-..++. +.+.+.+ .+++-++|+|++...+......+...+.....+.-|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 00000010111111110 00011112222 2333333 3566789999997666666777777665544333344
Q ss_pred EEcCchhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHH
Q 000782 307 VTTRSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKA 374 (1287)
Q Consensus 307 vTtR~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 374 (1287)
+|++...+...+ ..+..+++.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 444444444333 3567899999999999999987642110 011135789999999975544
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.00061 Score=79.96 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=91.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhccccccccc--ceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF--ELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
...+.|+|.+|+|||.||+++++. ..... ..++++++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 456899999999999999999984 33322 23455543 23344454444321 2222 333333
Q ss_pred CCeEEEEEeCCCCCChhh-H-hHhcccCCC-CCCCcEEEEEcCch-h--------hHhHhcCcCeEEccCCChhhHHHHH
Q 000782 271 LKRYLLVLDDLWGENYNE-W-EVLQLPFRG-GAHGSKIIVTTRSE-N--------VAQIVGTVPVFHLQELSDNDCWSLF 338 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~-~-~~~~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~lf 338 (1287)
+ .-+||+||+....... + +.+...+.. ...|..+|+|+... . +..++.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 2388899995432111 1 222222211 11345677777642 1 2222223457899999999999999
Q ss_pred HHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 339 AQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
.+.+..... .-.+++...|++.+.|.+-.+.
T Consensus 278 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGL----ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHH
Confidence 988744221 2235678888888888765443
No 144
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.69 E-value=0.00052 Score=75.02 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=80.7
Q ss_pred ccccchhhHHHHHHHHhc---------CcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCH
Q 000782 167 RIYGREEDADKLIDFLLK---------DVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDL 237 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 237 (1287)
.++|.+..+++|.+.... ..-...+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 578888777666543211 00011234567889999999999999999863110011111123333221
Q ss_pred HHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCC--------hhhHhHhcccCCCCCCCcEEEEEc
Q 000782 238 VKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGEN--------YNEWEVLQLPFRGGAHGSKIIVTT 309 (1287)
Q Consensus 238 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~ilvTt 309 (1287)
++.. ...+ .........+.+. . .-+|++|++..-. ......+...+........+|+++
T Consensus 84 -~l~~----~~~g-----~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVG----EYIG-----HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhh----hhcc-----chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 1100 1111222222222 2 2488999995411 112233433333333333555565
Q ss_pred CchhhHh------Hh-c-CcCeEEccCCChhhHHHHHHHHHc
Q 000782 310 RSENVAQ------IV-G-TVPVFHLQELSDNDCWSLFAQHAF 343 (1287)
Q Consensus 310 R~~~v~~------~~-~-~~~~~~l~~L~~~~a~~lf~~~a~ 343 (1287)
...+... .. . -...+++++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4433211 11 1 124688999999999999987764
No 145
>PRK06620 hypothetical protein; Validated
Probab=97.69 E-value=0.0003 Score=73.64 Aligned_cols=137 Identities=14% Similarity=0.021 Sum_probs=80.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
+.+.|+|++|+|||+|++.+++.. .. .++. ..... + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 678999999999999999988732 11 1111 00000 0 0111 22
Q ss_pred EEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchh-------hHhHhcCcCeEEccCCChhhHHHHHHHHHcCCC
Q 000782 274 YLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSEN-------VAQIVGTVPVFHLQELSDNDCWSLFAQHAFSKL 346 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~ 346 (1287)
-++++||+..-.....-.+...+. ..|..||+|++... ...++...-+++++++++++-.+++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478889995221111111111122 34668999988432 233344556899999999998888887764221
Q ss_pred CCCCCchhhHHHHHHHhhcCCchhHHHH
Q 000782 347 NPEARPSLESIGKEIAKKCKGLPLAAKA 374 (1287)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~PLai~~ 374 (1287)
-.--+++.+-|++++.|---.+.-
T Consensus 165 ----l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 ----VTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred ----CCCCHHHHHHHHHHccCCHHHHHH
Confidence 123356788888888876554433
No 146
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.68 E-value=0.00028 Score=81.50 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=96.2
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++.|+++.++++.+.+..... -+-...+-|.++|++|+|||++|+++++. ....| +.++. ..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~-----i~v~~----~~ 200 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----SE 200 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCE-----EEeeh----HH
Confidence 789999999999887642110 01134566889999999999999999973 33322 22221 11
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHH-cCCCeEEEEEeCCCCC-----------ChhhHhHhcccC---CC--CCCC
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRK-LTLKRYLLVLDDLWGE-----------NYNEWEVLQLPF---RG--GAHG 302 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-----------~~~~~~~~~~~l---~~--~~~g 302 (1287)
+ .....+ ........+.+. -...+.+|++||+..- +...+..+...+ .. ...+
T Consensus 201 l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 201 L----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred H----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1 111110 011112222222 2346789999999431 011111222222 11 1235
Q ss_pred cEEEEEcCchhhHhH-h-c---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCc
Q 000782 303 SKIIVTTRSENVAQI-V-G---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGL 368 (1287)
Q Consensus 303 s~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (1287)
.+||.||...+.... + . -...+.+++.+.++-.++|+.+..+..-. .... ...+++.+.|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCC
Confidence 677878876543221 1 1 23578999999999999999877433211 1112 34566666664
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00063 Score=82.53 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=108.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++||.+..++.|...+... .-.+.+.++|+.|+||||+|+.+++...-....+. .....-...+.|..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred HccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 7899999999999988654 23466789999999999999998763111100000 00000000011100
Q ss_pred HccC-----CCCCCCChHHHHHHHHHH-----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE-EcCchhhH
Q 000782 247 SLGE-----SCGHITQLEPLQSALKRK-----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV-TTRSENVA 315 (1287)
Q Consensus 247 ~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~ 315 (1287)
.-.. ........++. +.+.+. ..+++-++|+|++..-.......+...+......+.+|+ ||....+.
T Consensus 85 g~~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCCCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000 00000111111 112221 124556889999976655666777776665545666655 44444454
Q ss_pred hHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch-hHHHHHHh
Q 000782 316 QIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP-LAAKALGG 377 (1287)
Q Consensus 316 ~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 377 (1287)
..+ ..+..+++++++.++....+...+-..+ .....+.+..|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg----i~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEG----ISISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 332 2456788999999998888876553221 1123456778999999865 45555433
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=1.2e-06 Score=100.27 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=42.3
Q ss_pred ccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecCCccccCCc
Q 000782 598 HLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLPP 661 (1287)
Q Consensus 598 ~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l~~lp~ 661 (1287)
.|...+.++|.+..+-+++.-|+.|+.|||++|++...- .+..|++|+||||++|.++.+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccc
Confidence 455666666777666667777777777777777644432 56677777777777777776664
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.67 E-value=0.00024 Score=90.45 Aligned_cols=155 Identities=16% Similarity=0.126 Sum_probs=85.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccc---ccccc-ceeEEEEecCCCCHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEK---VNDHF-ELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~ 242 (1287)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++.... +.... +..+|. + +...++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA 248 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc
Confidence 6899999999999999754 233456999999999999999987311 11111 234442 1 1111111
Q ss_pred HHHHHccCCCCCCCChHHHHHHHHH-HcCCCeEEEEEeCCCCC-------ChhhHhHhcccCCCCCCCcEEEEEcCchhh
Q 000782 243 AILESLGESCGHITQLEPLQSALKR-KLTLKRYLLVLDDLWGE-------NYNEWEVLQLPFRGGAHGSKIIVTTRSENV 314 (1287)
Q Consensus 243 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v 314 (1287)
+.. ...+.++....+.+ .-..++.+|++|++..- ...+...+..+.... ..-++|.+|.....
T Consensus 249 -------g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey 319 (821)
T CHL00095 249 -------GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEY 319 (821)
T ss_pred -------cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHH
Confidence 111 11122222222222 22356899999998321 001112222222211 12456666665543
Q ss_pred HhH-------hcCcCeEEccCCChhhHHHHHHHH
Q 000782 315 AQI-------VGTVPVFHLQELSDNDCWSLFAQH 341 (1287)
Q Consensus 315 ~~~-------~~~~~~~~l~~L~~~~a~~lf~~~ 341 (1287)
... .....++.+.+.+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 221 123457889999999988888653
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0013 Score=79.45 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=107.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
+++|.+...+.+..++... .-.+...++|+.|+||||+|+.+++..--...-+ ....+.-...+.+..
T Consensus 17 ~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 7899999999999998654 2346677899999999999999876311000000 000000011111111
Q ss_pred HccCC-----CCCCCChHHHHHHHHHH-----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEE-EcCchhhH
Q 000782 247 SLGES-----CGHITQLEPLQSALKRK-----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIV-TTRSENVA 315 (1287)
Q Consensus 247 ~l~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-TtR~~~v~ 315 (1287)
....+ .......++.. .+++. ..+++-++|+|++..-....+..+...+........+|+ ||....+.
T Consensus 85 g~~~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred CCCCCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 00000 00011122211 12221 235667889999976655667777766655444555554 44444443
Q ss_pred hHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 316 QIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 316 ~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
..+ .....+++.+++.++....+...+-..+ .....+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg----i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEG----IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 322 2456788999999999888887663221 1123456778899998877533
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00088 Score=73.71 Aligned_cols=133 Identities=13% Similarity=0.097 Sum_probs=71.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
.-+.++|++|+|||++|+.+++.....+.....-|+.++. .+ +...+.+. ........+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-----~~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-----TAPKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-----chHHHHHHHHHc---cC
Confidence 3688999999999999987765211111111122444442 12 22222211 112222233332 23
Q ss_pred EEEEEeCCCCC---------ChhhHhHhcccCCCCCCCcEEEEEcCchhhHhHhc--------CcCeEEccCCChhhHHH
Q 000782 274 YLLVLDDLWGE---------NYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIVG--------TVPVFHLQELSDNDCWS 336 (1287)
Q Consensus 274 ~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~a~~ 336 (1287)
-+|++|++..- ....+..+...+.....+.+||+++.......... -...+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999521 11223344444444445667777765432221111 13568999999999999
Q ss_pred HHHHHH
Q 000782 337 LFAQHA 342 (1287)
Q Consensus 337 lf~~~a 342 (1287)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 988876
No 152
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0022 Score=65.95 Aligned_cols=183 Identities=19% Similarity=0.218 Sum_probs=107.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEec-CCCCHHHHHHHHHHHccCCCCCC--CChHHHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVS-DEFDLVKVTKAILESLGESCGHI--TQLEPLQSALKR 267 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~ 267 (1287)
++.+++.++|.-|.|||.++++.... ..+ +.++-+.+. +..+...+...++..+..+.... ...++..+.+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 35679999999999999999954431 111 112223333 33566778888888877632111 122333334444
Q ss_pred Hc-CCCe-EEEEEeCCCCCChhhHhHhcccCCCCCCCc---EEEEEcCch-------hhHhHhc-CcCe-EEccCCChhh
Q 000782 268 KL-TLKR-YLLVLDDLWGENYNEWEVLQLPFRGGAHGS---KIIVTTRSE-------NVAQIVG-TVPV-FHLQELSDND 333 (1287)
Q Consensus 268 ~l-~~k~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs---~ilvTtR~~-------~v~~~~~-~~~~-~~l~~L~~~~ 333 (1287)
.. +++| ..+++||.........+.++....-...++ +|+..-..+ .+..... .... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 5677 999999997766666666554332111111 233322211 0111111 2233 9999999999
Q ss_pred HHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhh
Q 000782 334 CWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGL 378 (1287)
Q Consensus 334 a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 378 (1287)
...++..+..+... ..+---.+....|.....|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99998887654432 222233456778999999999999877643
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0011 Score=74.06 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=65.7
Q ss_pred CeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchh-hHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCCC
Q 000782 272 KRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSEN-VAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPE 349 (1287)
Q Consensus 272 k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~ 349 (1287)
++-++|+|++...+......+...+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+..... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c----
Confidence 344556799987777777778777766556777777776653 3323 23467899999999999998876531 1
Q ss_pred CCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 350 ARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 350 ~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
...+.+..++..++|.|.....+
T Consensus 181 ---~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ---SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567789999999755444
No 154
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.61 E-value=0.0018 Score=70.09 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=102.1
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
+.|.+|+.+++.+..++... + ..-+..|.|.|-+|.|||.+.+++.+.. .. ..+|+++-+-++.+..+..|+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~-~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN-S--CTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred cCccchHHHHHHHHHHhCCC-C--cccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHH
Confidence 36789999999999988655 1 1234567999999999999999999843 22 358999999999999999999
Q ss_pred HHcc-CCCCC-CCCh--HH---HHHHHHHH--c--CCCeEEEEEeCCCCCChhhHhH-hcc-c--CCC-CCCCcEEEEEc
Q 000782 246 ESLG-ESCGH-ITQL--EP---LQSALKRK--L--TLKRYLLVLDDLWGENYNEWEV-LQL-P--FRG-GAHGSKIIVTT 309 (1287)
Q Consensus 246 ~~l~-~~~~~-~~~~--~~---~~~~l~~~--l--~~k~~LlVlDdv~~~~~~~~~~-~~~-~--l~~-~~~gs~ilvTt 309 (1287)
.+++ .+.+. .... +. ....+.++ . +++.++||||++..- .+.+. +.. . +.. .....-+|+++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 9985 22211 1111 21 22222221 1 256899999999432 11111 111 0 000 11123344444
Q ss_pred CchhhHhH---hcC--cCeEEccCCChhhHHHHHHHH
Q 000782 310 RSENVAQI---VGT--VPVFHLQELSDNDCWSLFAQH 341 (1287)
Q Consensus 310 R~~~v~~~---~~~--~~~~~l~~L~~~~a~~lf~~~ 341 (1287)
-..--... ++. ..++.....+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43222222 232 246778889999999988753
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.59 E-value=0.00057 Score=87.44 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=84.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc------ceeEEEEecCCCCHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF------ELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~ 240 (1287)
.++||+.++++++..|... ...-+.++|.+|+|||++|+.+++. +...+ ...+|.. ++..+
T Consensus 174 ~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l 240 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL 240 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH
Confidence 6999999999999999654 3345568999999999999998873 22111 2233321 11111
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHc-C-CCeEEEEEeCCCCCC-------hhhHhHhcccCCCCCCCcEEEEEcCc
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKL-T-LKRYLLVLDDLWGEN-------YNEWEVLQLPFRGGAHGSKIIVTTRS 311 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtR~ 311 (1287)
.. +.. ...+.+.....+.+.+ + +++.+|++|++..-. ..+...+..+....+ .-++|-+|..
T Consensus 241 ~a------~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~ 311 (852)
T TIGR03346 241 IA------GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTL 311 (852)
T ss_pred hh------cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcH
Confidence 10 000 0112222222222222 2 468999999995321 011122222222221 2345555554
Q ss_pred hhhHhH-------hcCcCeEEccCCChhhHHHHHHHHH
Q 000782 312 ENVAQI-------VGTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 312 ~~v~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
...... .....++.++..+.++..+++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 433211 1234578899999999999987654
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.0018 Score=75.79 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=87.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.|+|+.|+|||+||+++++. +......+++++. ..+...+...+... . ...+++.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHccc-
Confidence 457889999999999999999984 3222233445442 23444444444321 1 1234444443
Q ss_pred eEEEEEeCCCCCChhhH--hHhcccCCC-CCCCcEEEEEcCch---------hhHhHhcCcCeEEccCCChhhHHHHHHH
Q 000782 273 RYLLVLDDLWGENYNEW--EVLQLPFRG-GAHGSKIIVTTRSE---------NVAQIVGTVPVFHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 273 ~~LlVlDdv~~~~~~~~--~~~~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~lf~~ 340 (1287)
.-+|++||+.......| +.+...+.. ...|..||+||... .+..++.....+.+.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34788899854321111 222222211 01245688887542 2223333456889999999999999988
Q ss_pred HHcCCCCCCCCchhhHHHHHHHhhcCCc
Q 000782 341 HAFSKLNPEARPSLESIGKEIAKKCKGL 368 (1287)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (1287)
.+-... ..--+++..-|++.+.|.
T Consensus 283 k~~~~~----~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS----IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC----CCCCHHHHHHHHHhcCCC
Confidence 874322 112345666677766644
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0013 Score=77.09 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=93.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhccccccccc-c-eeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF-E-LKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
...+.|+|.+|+|||.||+++++. ....+ . .++|++. .++..++...+... ..+ .+++..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 446999999999999999999983 33322 2 3555544 34555555554321 122 2333333
Q ss_pred CCeEEEEEeCCCCCC-hhhH-hHhcccCCC-CCCCcEEEEEcC-chhh--------HhHhcCcCeEEccCCChhhHHHHH
Q 000782 271 LKRYLLVLDDLWGEN-YNEW-EVLQLPFRG-GAHGSKIIVTTR-SENV--------AQIVGTVPVFHLQELSDNDCWSLF 338 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~-~~~~-~~~~~~l~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~L~~~~a~~lf 338 (1287)
.+.-+||+||+.... ...+ +.+...+.. ...|..||+||. .+.- ..++.....+++++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999995321 1111 222222211 112446888875 3221 122234457899999999999999
Q ss_pred HHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 339 AQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
.+.+....- .--+++...|++.+.|.--.+.
T Consensus 273 ~~~~~~~~~----~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHG----ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCC----CCCHHHHHHHHhccccCHHHHH
Confidence 988743211 1235678889998888654443
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.52 E-value=0.00099 Score=79.18 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=93.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhccccccccc--ceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF--ELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
....+.|+|.+|+|||+||+++++. ...++ ..+++++.. ++...+...+... .. ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 3456899999999999999999983 43433 234455443 3333444443211 12 2233333
Q ss_pred CCCeEEEEEeCCCCCChh--hHhHhcccCCC-CCCCcEEEEEcCchh---------hHhHhcCcCeEEccCCChhhHHHH
Q 000782 270 TLKRYLLVLDDLWGENYN--EWEVLQLPFRG-GAHGSKIIVTTRSEN---------VAQIVGTVPVFHLQELSDNDCWSL 337 (1287)
Q Consensus 270 ~~k~~LlVlDdv~~~~~~--~~~~~~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~l 337 (1287)
+ +.-+||+||+...... ..+.+...+.. -..|..||+|+.... +..++.....+++++++.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 2348899999542111 11223222211 112445778776431 223333446799999999999999
Q ss_pred HHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHH
Q 000782 338 FAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAK 373 (1287)
Q Consensus 338 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 373 (1287)
+.+.+.... ..-.+++...|++.++|..-.+.
T Consensus 289 l~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEG----IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcC----CCCCHHHHHHHHcCcCCCHHHHH
Confidence 999874321 12335678889999998776443
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=1.5e-05 Score=72.43 Aligned_cols=92 Identities=25% Similarity=0.309 Sum_probs=72.7
Q ss_pred hcCCCcccEEEecCCCCcccCcccc-CCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceE
Q 000782 570 LKNFSRLRVLSLSHYEIVELPDLIG-DLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRF 648 (1287)
Q Consensus 570 ~~~~~~Lr~L~L~~~~i~~lp~~~~-~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 648 (1287)
+.+...|...+|++|.+..+|..|. +.+.+..|+|++|.|+.+|.++..++.|+.|+++.|. +...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 4456677788888888888887664 4457888888888888888888888888888888885 5667777777888888
Q ss_pred EEecCCccccCCcC
Q 000782 649 LDIRGCNLQQLPPH 662 (1287)
Q Consensus 649 L~l~~n~l~~lp~~ 662 (1287)
|+..+|.+..+|-.
T Consensus 128 Lds~~na~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENARAEIDVD 141 (177)
T ss_pred hcCCCCccccCcHH
Confidence 88888877777655
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0033 Score=69.55 Aligned_cols=96 Identities=9% Similarity=0.108 Sum_probs=65.5
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCC
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNP 348 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 348 (1287)
+++-++|+|++...+...-..+...+.....++.+|++|.. ..+...+ ..+..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 45678999999766656666677777665567777776664 3343332 345789999999999988886531 1
Q ss_pred CCCchhhHHHHHHHhhcCCchhHHHHHH
Q 000782 349 EARPSLESIGKEIAKKCKGLPLAAKALG 376 (1287)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 376 (1287)
+ +..+..++..++|.|+....+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2236678999999998665443
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.46 E-value=0.0012 Score=84.00 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=83.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc------cceeEE-EEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH------FELKAW-AFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~~ 239 (1287)
+++||+.+++++++.|... ...-+.++|.+|+|||++|+.++.. +... ....+| +.++.
T Consensus 179 ~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~------ 244 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGA------ 244 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhh------
Confidence 6999999999999999664 3345669999999999999999873 2111 112222 22221
Q ss_pred HHHHHHHHccCCCCCCCChHH-HHHHHHHHc-CCCeEEEEEeCCCCCC-------hhhHhHhcccCCCCCCCcEEEEEcC
Q 000782 240 VTKAILESLGESCGHITQLEP-LQSALKRKL-TLKRYLLVLDDLWGEN-------YNEWEVLQLPFRGGAHGSKIIVTTR 310 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtR 310 (1287)
+.. +. ....+.+. +...+.+.- .+++.+|++|++..-. ..+-..+..+.... ..-++|-||.
T Consensus 245 l~a-------g~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt 315 (857)
T PRK10865 245 LVA-------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATT 315 (857)
T ss_pred hhh-------cc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCC
Confidence 110 00 00111122 222222221 2578999999984321 00112222222222 1345666655
Q ss_pred chhhHhHh-------cCcCeEEccCCChhhHHHHHHHHH
Q 000782 311 SENVAQIV-------GTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 311 ~~~v~~~~-------~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
........ .....+.+...+.++..++++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 54432111 123467788889999999887654
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00061 Score=84.40 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=86.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc-----cceeEEEEecCCCCHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-----FELKAWAFVSDEFDLVKVT 241 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~ 241 (1287)
.++||+++++++++.|... ...-+.++|.+|+|||++|+.+++.. +... .++.+|.. +...
T Consensus 187 ~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~-- 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGS-- 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHH--
Confidence 6899999999999999764 22344689999999999999998731 1111 13444421 1111
Q ss_pred HHHHHHccCCCCCCCChHHHHHHHHHHc-CCCeEEEEEeCCCCC--------ChhhHhHhcccCCCCCCCcEEEEEcCch
Q 000782 242 KAILESLGESCGHITQLEPLQSALKRKL-TLKRYLLVLDDLWGE--------NYNEWEVLQLPFRGGAHGSKIIVTTRSE 312 (1287)
Q Consensus 242 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~ilvTtR~~ 312 (1287)
++. +. ....+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...
T Consensus 253 --lla---G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 253 --LLA---GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred --Hhc---cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 110 10 01112222222232222 346789999999421 112222233333322 134555555544
Q ss_pred hhHhH-------hcCcCeEEccCCChhhHHHHHHHHH
Q 000782 313 NVAQI-------VGTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 313 ~v~~~-------~~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
+.... ......+.+++++.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43211 1233579999999999999998654
No 163
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=7.4e-06 Score=74.30 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=84.8
Q ss_pred CcccEEEecCCCCcccCcc---ccCCCccceEecCCCCCcccchhhhcc-cCccEEeecCcccccccCCCCCCCCCceEE
Q 000782 574 SRLRVLSLSHYEIVELPDL---IGDLKHLRYLDLSNTSIKSLPESIAAL-YNLQTLILYSCRYLIQLPKHMGDLFNLRFL 649 (1287)
Q Consensus 574 ~~Lr~L~L~~~~i~~lp~~---~~~l~~Lr~L~Ls~n~i~~lp~~i~~L-~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 649 (1287)
+.+..+||+.|.+..+++. +.+..+|...+|++|.++..|+.|... +.+++|+|.+|. +..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 4466789999988877654 456678888999999999999888654 599999999995 78889999999999999
Q ss_pred EecCCccccCCcCCCCCCCCCccCc
Q 000782 650 DIRGCNLQQLPPHMGGLKNLRTLPS 674 (1287)
Q Consensus 650 ~l~~n~l~~lp~~i~~L~~L~~L~~ 674 (1287)
+++.|.+...|.-|..|.+|-.|+.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcC
Confidence 9999999999988888888777743
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.44 E-value=0.005 Score=63.77 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=62.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
.++|.|++++.|++-...=. .+....-+-++|..|.|||++++++.+...-++ .--|.+.+.
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------------ 89 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------------ 89 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH------------
Confidence 89999999998876543210 112456677899999999999999987322111 112233221
Q ss_pred HccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHhHhcccCC
Q 000782 247 SLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGE-NYNEWEVLQLPFR 297 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~ 297 (1287)
+..+...+.+.++. +..||+|.+||+--+ .......++..+.
T Consensus 90 -------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 -------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 22233334444442 457999999998332 2344555555443
No 165
>PF14516 AAA_35: AAA-like domain
Probab=97.42 E-value=0.0038 Score=70.56 Aligned_cols=199 Identities=12% Similarity=0.065 Sum_probs=116.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-----CCHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-----FDLVKVT 241 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 241 (1287)
-.|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++..- .+....+
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred cccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHH
Confidence 5678886667777777543 368999999999999999998874222 233 4456776542 2455555
Q ss_pred HHHHH----HccCCCC-------CCCChHHHHHHHHHHc---CCCeEEEEEeCCCCCCh-----hhHhHhcccCCC-C--
Q 000782 242 KAILE----SLGESCG-------HITQLEPLQSALKRKL---TLKRYLLVLDDLWGENY-----NEWEVLQLPFRG-G-- 299 (1287)
Q Consensus 242 ~~i~~----~l~~~~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~-----~~~~~~~~~l~~-~-- 299 (1287)
+.++. +++.... ...........+.+++ .+++.+|++|+|...-. .++-.+.+.+-. .
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 55554 4433220 1122233344455543 26899999999943210 111111111111 0
Q ss_pred --CCCc-EEEE-EcCchhhHhH-----hcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 300 --AHGS-KIIV-TTRSENVAQI-----VGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 300 --~~gs-~ilv-TtR~~~v~~~-----~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
.... ++++ -+........ ......++|++++.+|...|..++-..- -....++|...+||+|.
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------CHHHHHHHHHHHCCCHH
Confidence 0111 1222 2111111111 1123579999999999999998764221 12238899999999999
Q ss_pred HHHHHHhhhcCC
Q 000782 371 AAKALGGLLRSK 382 (1287)
Q Consensus 371 ai~~~~~~l~~~ 382 (1287)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999764
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.41 E-value=0.001 Score=80.16 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=39.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+++|.++.++++..++... .......+++.|+|++|.||||+++.++..
T Consensus 85 el~~~~~ki~~l~~~l~~~-~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQ-VLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HhcCcHHHHHHHHHHHHhc-ccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999998654 112234468999999999999999999873
No 167
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00022 Score=69.87 Aligned_cols=81 Identities=26% Similarity=0.317 Sum_probs=49.5
Q ss_pred cEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecCCcc
Q 000782 577 RVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNL 656 (1287)
Q Consensus 577 r~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l 656 (1287)
+.++|.+..+..+..-=.-+.+...+||++|++..++ .|..+..|.+|.|++|++...-|.--..+++|..|.+.+|+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 4566666655443321112345667778888777663 366677777777777776666665445566677777777655
Q ss_pred cc
Q 000782 657 QQ 658 (1287)
Q Consensus 657 ~~ 658 (1287)
.+
T Consensus 101 ~~ 102 (233)
T KOG1644|consen 101 QE 102 (233)
T ss_pred hh
Confidence 43
No 168
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.004 Score=70.33 Aligned_cols=162 Identities=10% Similarity=0.063 Sum_probs=89.8
Q ss_pred cccc-chhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 167 RIYG-REEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+++..--....... .++.- ...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 4566 666777887777544 345677899999999999999886631111100000 00000 0000000
Q ss_pred HHcc------CCCCCCCChHHHHHHHHHH----cCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hh
Q 000782 246 ESLG------ESCGHITQLEPLQSALKRK----LTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NV 314 (1287)
Q Consensus 246 ~~l~------~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v 314 (1287)
..-. ...+.....+++.+.+... ..+.+=++|+|++...+......+...+.....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 0000111122222222111 23455678999997666666677777777666677777777653 33
Q ss_pred HhHh-cCcCeEEccCCChhhHHHHHHH
Q 000782 315 AQIV-GTVPVFHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 315 ~~~~-~~~~~~~l~~L~~~~a~~lf~~ 340 (1287)
...+ .....+++.++++++..+.+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3322 3457899999999999888765
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=1.2e-05 Score=92.38 Aligned_cols=86 Identities=29% Similarity=0.347 Sum_probs=45.1
Q ss_pred HHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccch-hhhcccCccEEeecCcccccccCCCCCCCCCc
Q 000782 568 DLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPE-SIAALYNLQTLILYSCRYLIQLPKHMGDLFNL 646 (1287)
Q Consensus 568 ~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L 646 (1287)
..+.-++.|+.|||++|+++... .+..|++|+.|||++|.+..+|. +...+. |+.|++++|. +..+- .+.+|++|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhh-hHHhhhhh
Confidence 33444555566666666555543 55555666666666666555552 222233 5666665553 33332 25556666
Q ss_pred eEEEecCCccc
Q 000782 647 RFLDIRGCNLQ 657 (1287)
Q Consensus 647 ~~L~l~~n~l~ 657 (1287)
+.||+++|-+.
T Consensus 257 ~~LDlsyNll~ 267 (1096)
T KOG1859|consen 257 YGLDLSYNLLS 267 (1096)
T ss_pred hccchhHhhhh
Confidence 66666665443
No 170
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.31 E-value=0.0048 Score=73.32 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=91.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhccccccccc--ceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHF--ELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
..+.|+|..|.|||.|++++++. ....+ ..++|++. .++..++...+.. ... ..+++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~-----~~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRD-----GKG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----ccH----HHHHHHhhc
Confidence 45899999999999999999983 33222 23445543 3344444433321 111 223333433
Q ss_pred CeEEEEEeCCCCCCh-hhHh-HhcccCCC-CCCCcEEEEEcCch---------hhHhHhcCcCeEEccCCChhhHHHHHH
Q 000782 272 KRYLLVLDDLWGENY-NEWE-VLQLPFRG-GAHGSKIIVTTRSE---------NVAQIVGTVPVFHLQELSDNDCWSLFA 339 (1287)
Q Consensus 272 k~~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~lf~ 339 (1287)
.=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-.+++++.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788899954322 2222 22222221 12345688888752 233444456789999999999999999
Q ss_pred HHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 340 QHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
+++-...- ..-+++++-|++++.+..-.+
T Consensus 457 kka~~r~l----~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQL----NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCC----CCCHHHHHHHHHhccCCHHHH
Confidence 88743221 223567777888877664433
No 171
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0067 Score=68.46 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=82.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
....+.|+|..|.|||-|++++.+ ....+......+.++. +.....++..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 578999999999999999999998 4445554333333332 2333333333321 1123455554
Q ss_pred CeEEEEEeCCCCCCh-hhH-hHhcccCCC-CCCCcEEEEEcCc---------hhhHhHhcCcCeEEccCCChhhHHHHHH
Q 000782 272 KRYLLVLDDLWGENY-NEW-EVLQLPFRG-GAHGSKIIVTTRS---------ENVAQIVGTVPVFHLQELSDNDCWSLFA 339 (1287)
Q Consensus 272 k~~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~lf~ 339 (1287)
.-=++++||++--.. ..| +.+...|.. ...|-.||+|++. +++..++...-.+++.+++.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 333888999954211 122 223332221 1224489999964 3344555666789999999999999999
Q ss_pred HHHcC
Q 000782 340 QHAFS 344 (1287)
Q Consensus 340 ~~a~~ 344 (1287)
+.+..
T Consensus 255 kka~~ 259 (408)
T COG0593 255 KKAED 259 (408)
T ss_pred HHHHh
Confidence 87743
No 172
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.29 E-value=0.012 Score=74.66 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=85.5
Q ss_pred CCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
+++++|.++.+++|.+++.........+..++.++|++|+|||++|+.+++ .....|-. +.++...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~~---i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFVR---FSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeEE---EeCCCcccHHHHcC--
Confidence 346889999999998876432111112345899999999999999999998 33333322 22232222222210
Q ss_pred HHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChh----hHhHhccc--------CCCC-------CCCcEE
Q 000782 245 LESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYN----EWEVLQLP--------FRGG-------AHGSKI 305 (1287)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~~~~~--------l~~~-------~~gs~i 305 (1287)
. ...........+...+.+.-. ++-+|+||++..-... ....+... |.+. ..+..+
T Consensus 392 --~--~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 392 --H--RRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred --C--CCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 000001112233344444333 3347899998443210 00111111 1111 123344
Q ss_pred EEEcCchh-hHhH-hcCcCeEEccCCChhhHHHHHHHHH
Q 000782 306 IVTTRSEN-VAQI-VGTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 306 lvTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
|.||.... +... ......+++.+++.++-.+++.++.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55554432 1111 1234578999999998888887654
No 173
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.01 Score=65.91 Aligned_cols=175 Identities=7% Similarity=0.025 Sum_probs=100.2
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc------ce--eEEEEecCCCCHHHHHHHHHH
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF------EL--KAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~--~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
-+.+...+..+ .-.+...++|+.|+||+++|+.++...--.... .| .-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 34556666443 234677899999999999999987631110000 00 000111111111100
Q ss_pred HccCCCCCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-c
Q 000782 247 SLGESCGHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-G 319 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~ 319 (1287)
....+..-.+++.. .+.+.+ .+++=++|+|++..........+...+.....++.+|++|... .+...+ .
T Consensus 80 --~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 00000111223222 222222 3566688899997777777778888887766777777777654 444332 3
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
....+.+.++++++..+.+...... . ...+...++.++|.|..+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHH
Confidence 4678999999999999888875411 1 113556788999999633
No 174
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.28 E-value=0.0014 Score=75.75 Aligned_cols=157 Identities=14% Similarity=0.111 Sum_probs=87.0
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++.|.+..++++.+.+.-... -+-...+-+.++|++|.|||++|+++++ .....| +.+... .
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----e 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----E 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----h
Confidence 678999999988887642100 0112345678999999999999999998 344444 222111 1
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCC--------C---hhh---HhHhcccCCC--CCCCc
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGE--------N---YNE---WEVLQLPFRG--GAHGS 303 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~---~~~~~~~l~~--~~~gs 303 (1287)
+ .....+ .....+...+.....+.+.+|++|++... . ... ...+...+.. ...+.
T Consensus 253 L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 1 111110 01111222222233457889999987321 0 000 0111111111 12356
Q ss_pred EEEEEcCchhhHhHh-----cCcCeEEccCCChhhHHHHHHHHHc
Q 000782 304 KIIVTTRSENVAQIV-----GTVPVFHLQELSDNDCWSLFAQHAF 343 (1287)
Q Consensus 304 ~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~lf~~~a~ 343 (1287)
+||+||...+..... .-...+.+...+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 788888765544332 1235789999999999999998764
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.27 E-value=0.0026 Score=63.43 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=78.2
Q ss_pred cchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccc---cc---------------cccceeEEEEe
Q 000782 170 GREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEK---VN---------------DHFELKAWAFV 231 (1287)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~---------------~~f~~~~wv~~ 231 (1287)
|-+...+.+.+.+..+ .-.+.+.++|..|+||+++|..+++..- .. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4566677777777554 3345789999999999999999876311 11 11223333332
Q ss_pred cCC---CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEE
Q 000782 232 SDE---FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVT 308 (1287)
Q Consensus 232 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvT 308 (1287)
... ..++.+ +++.+.+.... ..+++=++|+||+.......+..+...+.....++++|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 122222 23333322111 1245668999999877778888888888777778898888
Q ss_pred cCchh-hHhHh-cCcCeEEccCCC
Q 000782 309 TRSEN-VAQIV-GTVPVFHLQELS 330 (1287)
Q Consensus 309 tR~~~-v~~~~-~~~~~~~l~~L~ 330 (1287)
|++.. +.... .....+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88765 33322 345567776654
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.27 E-value=0.00096 Score=65.67 Aligned_cols=88 Identities=19% Similarity=0.018 Sum_probs=46.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC-
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK- 272 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 272 (1287)
..+.|+|++|+||||+|+.++.. .......++++..+........... ...................+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999984 2222223455554443322221111 111111111222222233333433333
Q ss_pred eEEEEEeCCCCCC
Q 000782 273 RYLLVLDDLWGEN 285 (1287)
Q Consensus 273 ~~LlVlDdv~~~~ 285 (1287)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999996643
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.24 E-value=0.0042 Score=65.21 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=74.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE----ecCC-----CCH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF----VSDE-----FDL 237 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~-----~~~ 237 (1287)
.+.+|......+..++... .++.++|.+|.|||+||.+++.+.-..+.|+.++... +++. -+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 5678888888888888543 4999999999999999999887422234455444321 1110 011
Q ss_pred ----HHHHHHHHHHccCCCCCCCChHHHHHHH-----------HHHcCCCeE---EEEEeCCCCCChhhHhHhcccCCCC
Q 000782 238 ----VKVTKAILESLGESCGHITQLEPLQSAL-----------KRKLTLKRY---LLVLDDLWGENYNEWEVLQLPFRGG 299 (1287)
Q Consensus 238 ----~~~~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~k~~---LlVlDdv~~~~~~~~~~~~~~l~~~ 299 (1287)
.-.++-+.+.+..-.+ .+.....+ -.+++++.+ +||+|++...+......+... -
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~----~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~ 200 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLG----ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---L 200 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhC----hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---c
Confidence 1112222222211000 01111111 135567654 999999977665554444433 3
Q ss_pred CCCcEEEEEcCch
Q 000782 300 AHGSKIIVTTRSE 312 (1287)
Q Consensus 300 ~~gs~ilvTtR~~ 312 (1287)
+.+|++|+|--..
T Consensus 201 g~~sk~v~~GD~~ 213 (262)
T PRK10536 201 GENVTVIVNGDIT 213 (262)
T ss_pred CCCCEEEEeCChh
Confidence 5689999986544
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00023 Score=87.21 Aligned_cols=111 Identities=25% Similarity=0.268 Sum_probs=85.4
Q ss_pred ccCCCceEEecCCCCCcccccchhchHHHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccc--hhhhc
Q 000782 541 RSHKYLRTFLPLDGGFGICRITKKVTHDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP--ESIAA 618 (1287)
Q Consensus 541 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp--~~i~~ 618 (1287)
.-++.||+|.+.+..+. ..-....+.+|++|+.||+|+++++.+ .++++|++|+.|.+.+-.+..-+ ..+.+
T Consensus 145 ~~LPsL~sL~i~~~~~~-----~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFD-----NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hhCcccceEEecCceec-----chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 35789999988764331 222456788999999999999999988 78999999999999988877543 57889
Q ss_pred ccCccEEeecCcccccc------cCCCCCCCCCceEEEecCCccc
Q 000782 619 LYNLQTLILYSCRYLIQ------LPKHMGDLFNLRFLDIRGCNLQ 657 (1287)
Q Consensus 619 L~~L~~L~L~~n~~~~~------lp~~~~~L~~L~~L~l~~n~l~ 657 (1287)
|++|++||+|..+.... --+.-..|++||.||.+++.+.
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999999998653221 1122345899999999998654
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.011 Score=65.52 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc-------cceeEEEEecCCCCHHHHHHHHHHH
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-------FELKAWAFVSDEFDLVKVTKAILES 247 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------f~~~~wv~~~~~~~~~~~~~~i~~~ 247 (1287)
.+++.+.+..+ .-.+.+-++|+.|+||+++|..++...--... -...-++..+..+|...+
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------- 79 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------- 79 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-------
Confidence 45555555443 34568889999999999999988762110000 000000001111111000
Q ss_pred ccCC-CCCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-c
Q 000782 248 LGES-CGHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-G 319 (1287)
Q Consensus 248 l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~ 319 (1287)
... .+..-.+++.. .+.+.+ .+++=++|+|++..........+...+.....++.+|++|.+. .+...+ +
T Consensus 80 -~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 80 -KPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred -ecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000 00111223222 222222 2445588899997777777788888777766677776666654 444333 3
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
....+.+.+++++++.+.+.... . + .+..+++.++|.|+....+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~---~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG---I---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC---C---c------hHHHHHHHcCCCHHHHHHH
Confidence 56789999999999998886531 0 1 1356789999999876544
No 180
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.00045 Score=67.72 Aligned_cols=103 Identities=24% Similarity=0.297 Sum_probs=77.1
Q ss_pred CcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhh-cccCccEEeecCccccc--ccCCCCCCCCCceEEE
Q 000782 574 SRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIA-ALYNLQTLILYSCRYLI--QLPKHMGDLFNLRFLD 650 (1287)
Q Consensus 574 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~n~~~~--~lp~~~~~L~~L~~L~ 650 (1287)
.....+||++|.+..++ .|..++.|..|.|++|+|+.+-..+. -+++|++|.|.+|++.. .+ .-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 34567899999888774 57788899999999999998854454 56779999999986432 22 2367788999999
Q ss_pred ecCCccccCCcC----CCCCCCCCccCceecC
Q 000782 651 IRGCNLQQLPPH----MGGLKNLRTLPSFLVS 678 (1287)
Q Consensus 651 l~~n~l~~lp~~----i~~L~~L~~L~~~~~~ 678 (1287)
+-+|.++.-+.. +.++++|++|+...+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999987755433 6788888888665553
No 181
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.0005 Score=66.55 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 000782 196 IPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~ 216 (1287)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 182
>PRK08116 hypothetical protein; Validated
Probab=97.18 E-value=0.0013 Score=71.52 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=58.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
..+.++|.+|+|||.||.++++. ...+...++++++ .+++..+........ .... ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 45889999999999999999984 3222334555553 345555554433211 1111 22334444334
Q ss_pred EEEEEeCCCCCChhhHhH--hcccCCC-CCCCcEEEEEcCch
Q 000782 274 YLLVLDDLWGENYNEWEV--LQLPFRG-GAHGSKIIVTTRSE 312 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtR~~ 312 (1287)
||||||+..+...+|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995443345543 3222221 12355689998754
No 183
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.17 E-value=0.0082 Score=65.48 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 173 EDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 173 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
+-++++..++..+ +.|.+.|.+|+|||++|+.+++ ..... .+++++....+..++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHH
Confidence 3445555555432 3566899999999999999986 33322 344555554444443
No 184
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.16 E-value=0.005 Score=70.81 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++.|.+..+++|.+.+.-... .+-...+-+.++|++|.|||++|+++++. ....| +.+.. ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----SE 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----HH
Confidence 688999888888876642100 01134567889999999999999999983 33333 22211 11
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCC-----------Chh---hHhHhcccCCC--CCCCc
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGE-----------NYN---EWEVLQLPFRG--GAHGS 303 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~~~~~l~~--~~~gs 303 (1287)
+ .....+ .....+...+.......+.+|++|++..- +.. .+..+...+.. ...+.
T Consensus 215 l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 F----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred H----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1 111111 01112222233333467899999997421 000 01112222211 22356
Q ss_pred EEEEEcCchhhHhH-h-c---CcCeEEccCCChhhHHHHHHHHH
Q 000782 304 KIIVTTRSENVAQI-V-G---TVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 304 ~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
.||+||...+.... + . -...+.++..+.++..++|..+.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 78888876544322 1 1 23468899999999888888665
No 185
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.14 E-value=0.004 Score=78.08 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred CCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
++..+|.++.+++|.++|............++.++|++|+||||+|+.++. .....|-. +..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 447899999999999888642111122446899999999999999999996 33333322 2333333332221110
Q ss_pred HHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhh----HhHhcccCCC---------------CCCCcEE
Q 000782 245 LESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNE----WEVLQLPFRG---------------GAHGSKI 305 (1287)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~~~~~l~~---------------~~~gs~i 305 (1287)
.... ......+...+.+.- ...-+++||.+..-.... ...+...+.. .-+...+
T Consensus 396 -~~~~-----g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYI-----GSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccC-----CCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0000 011222333343322 233478899984432111 1222222211 1134445
Q ss_pred EEEcCchhhHhHh-cCcCeEEccCCChhhHHHHHHHHH
Q 000782 306 IVTTRSENVAQIV-GTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 306 lvTtR~~~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
|.|+....+.... .....+.+.++++++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5566544332222 244678999999999988887765
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.10 E-value=0.02 Score=73.24 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=74.7
Q ss_pred CccccchhhHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 242 (1287)
+.++|.+..++.+...+.... ...+....++.++|+.|+|||++|+.+++. .-..-...+.+.++..... ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~-~~-- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK-HS-- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-hh--
Confidence 368999999999988876420 011223357889999999999999999863 2111122344444432111 11
Q ss_pred HHHHHccCCCCCCCChHHHHHHHHHHcCC-CeEEEEEeCCCCCChhhHhHhcccCCCC----C-------CCcEEEEEcC
Q 000782 243 AILESLGESCGHITQLEPLQSALKRKLTL-KRYLLVLDDLWGENYNEWEVLQLPFRGG----A-------HGSKIIVTTR 310 (1287)
Q Consensus 243 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~~~~~l~~~----~-------~gs~ilvTtR 310 (1287)
+.+-+|.+.+.. ..+. ...+.+.++. ..-+|+|||+...+...+..+...+..+ + ..+.||+||.
T Consensus 643 -~~~LiG~~pgy~-g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 643 -VSRLVGAPPGYV-GYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred -HHHHhCCCCccc-ccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 111123222111 1110 1122333322 2359999999766667777666555332 1 1233777877
Q ss_pred c
Q 000782 311 S 311 (1287)
Q Consensus 311 ~ 311 (1287)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.014 Score=65.48 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc---ccccce-----eEEEEecCCCCHHHHHHHHHH
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV---NDHFEL-----KAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~-----~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
-+++...+..+ .-.+..-+.|+.|+||+++|.+++...-- ...-.| ..++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 45666666543 34577889999999999999987663110 000000 001111111111100
Q ss_pred HccCCCC-CCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhH-h
Q 000782 247 SLGESCG-HITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQI-V 318 (1287)
Q Consensus 247 ~l~~~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~-~ 318 (1287)
..... ..-.+++..+ +.+.+ .+++=++|+|++...+......+...+.....++.+|++|.+. .+... .
T Consensus 80 --~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 --TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred --ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 1112233222 22222 3566789999997777677777877777666677776666654 44433 2
Q ss_pred cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 319 GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 319 ~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
+....+.+.+++++++.+.+.... + ...+.+..+++.++|.|...
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~--------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T--------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C--------CCHHHHHHHHHHcCCCHHHH
Confidence 355688999999999988876532 1 11233678899999999644
No 188
>CHL00176 ftsH cell division protein; Validated
Probab=97.00 E-value=0.0071 Score=73.73 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=95.6
Q ss_pred ccccchhhHHHHHHH---HhcCcc---cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 167 RIYGREEDADKLIDF---LLKDVE---ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
+++|.++..+++.+. +..... .+....+-+.++|++|.|||++|++++.. .... |+.++.. ++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----EF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----HH
Confidence 677887666655544 332200 01123456899999999999999999873 2222 2333211 11
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCC----------hhhHh----HhcccCCC--CCCCcE
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGEN----------YNEWE----VLQLPFRG--GAHGSK 304 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~----~~~~~l~~--~~~gs~ 304 (1287)
. ....+ .....+...+.+.....+.+|++||+..-. ...++ .+...+.. ...+..
T Consensus 253 ~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 V----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred H----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1 11000 111223334455556788999999994310 11121 22222211 234556
Q ss_pred EEEEcCchhhHhH-h-c---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCC
Q 000782 305 IIVTTRSENVAQI-V-G---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKG 367 (1287)
Q Consensus 305 ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 367 (1287)
||.||...+.... + . -...+.+...+.++-.++++.++-.... ........+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 7777766543322 1 1 2357889999999999999888743211 112235677888777
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.018 Score=64.92 Aligned_cols=150 Identities=18% Similarity=0.248 Sum_probs=88.6
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 190 DDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 190 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
..+...+.+.|++|.|||+||..++. ...|+.+--++...-..+.+ ......+........
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhh
Confidence 35677888999999999999999986 34566554433222111111 011112233344455
Q ss_pred CCCeEEEEEeCCCCCChhhHhHhcccC------------CC-CCCCcE--EEEEcCchhhHhHhcC----cCeEEccCCC
Q 000782 270 TLKRYLLVLDDLWGENYNEWEVLQLPF------------RG-GAHGSK--IIVTTRSENVAQIVGT----VPVFHLQELS 330 (1287)
Q Consensus 270 ~~k~~LlVlDdv~~~~~~~~~~~~~~l------------~~-~~~gs~--ilvTtR~~~v~~~~~~----~~~~~l~~L~ 330 (1287)
+..--.||+||+. ...+|..+...+ .. ...|-| |+-||....+...|+- ...|+++.++
T Consensus 596 kS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 6677899999993 334554443321 11 122334 4557777888888862 3578999998
Q ss_pred h-hhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhc
Q 000782 331 D-NDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKC 365 (1287)
Q Consensus 331 ~-~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~ 365 (1287)
. ++..+.++..- .-.+...+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77878777643 111224455666666666
No 190
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.97 E-value=0.0071 Score=69.94 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=82.8
Q ss_pred cchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHcc
Q 000782 170 GREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLG 249 (1287)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 249 (1287)
.|..-..++.+.+... ..++.|+|+-++||||+++.+... ..+. .+++...+......-+.+..
T Consensus 21 ~~~~~~~~l~~~~~~~-------~~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~---- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLR-------PFIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL---- 84 (398)
T ss_pred hHHhhhHHHHhhcccC-------CcEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH----
Confidence 3444455565555332 129999999999999999777652 2222 44444433211111111111
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHhH-----h-cCcCe
Q 000782 250 ESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQI-----V-GTVPV 323 (1287)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~-----~-~~~~~ 323 (1287)
..+.+.-..++..++||.|.. ...|......+.+.++. +|++|+-+...... . |....
T Consensus 85 -------------~~~~~~~~~~~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 85 -------------RAYIELKEREKSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred -------------HHHHHhhccCCceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 111111112788999999955 46788887777776555 88888887554322 1 34467
Q ss_pred EEccCCChhhHHHHH
Q 000782 324 FHLQELSDNDCWSLF 338 (1287)
Q Consensus 324 ~~l~~L~~~~a~~lf 338 (1287)
+++.||+-.|...+-
T Consensus 149 ~~l~PlSF~Efl~~~ 163 (398)
T COG1373 149 LELYPLSFREFLKLK 163 (398)
T ss_pred EEECCCCHHHHHhhc
Confidence 999999999987653
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.97 E-value=0.0035 Score=69.65 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=64.5
Q ss_pred hHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccc-ccce-eEEEEecCCC-CHHHHHHHHHHHccC
Q 000782 174 DADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND-HFEL-KAWAFVSDEF-DLVKVTKAILESLGE 250 (1287)
Q Consensus 174 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~ 250 (1287)
...++++.+..- ++-+.+.|+|.+|+|||||++.+++. +.. +-+. ++|+.+.+.. ++.++++.+...+..
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 345577777643 23356699999999999999998873 322 2233 4677777654 578888888887765
Q ss_pred CCCCCCChHH-----HHHHHHHHc--CCCeEEEEEeCC
Q 000782 251 SCGHITQLEP-----LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 251 ~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
...+...... ....+-+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4322222111 111222222 689999999998
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.97 E-value=0.0033 Score=72.18 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=36.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHH
Confidence 5899999999999888765 4678999999999999999987
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.96 E-value=0.0011 Score=69.34 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=29.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFV 231 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 231 (1287)
-.++|+|..|.||||++..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4678999999999999999987 46778877776644
No 194
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.96 E-value=0.0055 Score=71.94 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=88.3
Q ss_pred ccccchhhHHHHHHHHhcCc-------ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccc-----cceeEEEEecCC
Q 000782 167 RIYGREEDADKLIDFLLKDV-------EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-----FELKAWAFVSDE 234 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~ 234 (1287)
++.|.+..++++.+.+.-+. ..+-...+-+.++|++|.|||++|+++++. .... +....|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccch
Confidence 57789999999888764210 001123456889999999999999999984 2222 123344444321
Q ss_pred CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHH-cCCCeEEEEEeCCCCCC-------hhhH-----hHhcccCCC--C
Q 000782 235 FDLVKVTKAILESLGESCGHITQLEPLQSALKRK-LTLKRYLLVLDDLWGEN-------YNEW-----EVLQLPFRG--G 299 (1287)
Q Consensus 235 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~~~~~l~~--~ 299 (1287)
+++....+. .......+....++. -.+++++|+||+++..- ..+. ..+...+.. .
T Consensus 261 --------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 --------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred --------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111110000 000111122222222 23578999999995310 0111 122222221 1
Q ss_pred CCCcEEEEEcCchhhHhH-h-c---CcCeEEccCCChhhHHHHHHHHH
Q 000782 300 AHGSKIIVTTRSENVAQI-V-G---TVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 300 ~~gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
..+..||.||...+.... + . -...++++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 234456666665543221 1 1 13468999999999999999886
No 195
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0022 Score=75.29 Aligned_cols=164 Identities=17% Similarity=0.239 Sum_probs=91.7
Q ss_pred CCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
+.+.+|-++..++|++.|.-......-+-.++++||++|+|||+|++.+++ .....|-. ++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 447899999999999998643111223457999999999999999999998 45555633 334443333222
Q ss_pred HHHccCCCC--CCCChHHHHHHHHHHcCCCeEEEEEeCCCCC------Ch----------hhHhHhcccCCCCC-CCcE-
Q 000782 245 LESLGESCG--HITQLEPLQSALKRKLTLKRYLLVLDDLWGE------NY----------NEWEVLQLPFRGGA-HGSK- 304 (1287)
Q Consensus 245 ~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~----------~~~~~~~~~l~~~~-~gs~- 304 (1287)
.+... -..-+..+.+.+++. +.+.-+++||.+... ++ ++-..+......-. -=|.
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 11100 011222333334333 456778889988321 11 11111111111000 0123
Q ss_pred EEEEcCc-hh-h-HhHhcCcCeEEccCCChhhHHHHHHHHH
Q 000782 305 IIVTTRS-EN-V-AQIVGTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 305 ilvTtR~-~~-v-~~~~~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
+.|||-+ -+ + +..+....++++.+.+++|=.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3444433 22 2 2223456789999999999888877765
No 196
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.93 E-value=0.0067 Score=60.72 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
++||-++.++++.-.-.+ ++..-+.|.||+|+||||-+..+++
T Consensus 28 dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 789999999998766543 3677889999999999998888876
No 197
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.93 E-value=8.3e-05 Score=75.67 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=64.9
Q ss_pred cCCCcccEEEecCCCCc-----ccCccccCCCccceEecCCCCCc----ccc-------hhhhcccCccEEeecCccccc
Q 000782 571 KNFSRLRVLSLSHYEIV-----ELPDLIGDLKHLRYLDLSNTSIK----SLP-------ESIAALYNLQTLILYSCRYLI 634 (1287)
Q Consensus 571 ~~~~~Lr~L~L~~~~i~-----~lp~~~~~l~~Lr~L~Ls~n~i~----~lp-------~~i~~L~~L~~L~L~~n~~~~ 634 (1287)
..+..+..++||||.|. .+...+.+-.+|+..+++.-... ++| +.+-+|++|++.+||.|-+-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34778889999999886 35567777788999988854221 333 456788999999999997655
Q ss_pred ccCCC----CCCCCCceEEEecCCccccC
Q 000782 635 QLPKH----MGDLFNLRFLDIRGCNLQQL 659 (1287)
Q Consensus 635 ~lp~~----~~~L~~L~~L~l~~n~l~~l 659 (1287)
..|.. ++.-+.|.||.+++|.+-.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 55543 56778899999998875433
No 198
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00036 Score=85.52 Aligned_cols=110 Identities=27% Similarity=0.256 Sum_probs=79.8
Q ss_pred chHHHhcCCCcccEEEecCCCCc--ccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCccccc-ccCCCCC
Q 000782 565 VTHDLLKNFSRLRVLSLSHYEIV--ELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLI-QLPKHMG 641 (1287)
Q Consensus 565 ~~~~~~~~~~~Lr~L~L~~~~i~--~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~-~lp~~~~ 641 (1287)
.+...-..+|.|+.|.+.+-.+. ++.....++++|+.||+|+++|+.+ ..+++|+||++|.+.+=.+.. .--..+.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 34455567899999999987664 3445667889999999999999999 889999999999997643322 1123478
Q ss_pred CCCCceEEEecCCccccCCc-------CCCCCCCCCccCce
Q 000782 642 DLFNLRFLDIRGCNLQQLPP-------HMGGLKNLRTLPSF 675 (1287)
Q Consensus 642 ~L~~L~~L~l~~n~l~~lp~-------~i~~L~~L~~L~~~ 675 (1287)
+|++|++||+|......-+. .-..|++|+.|+..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 89999999999875332221 12336677777443
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.022 Score=63.70 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhHhH-hcCcCeEEccCCChhhHHHHHHHHHcCCCCC
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVAQI-VGTVPVFHLQELSDNDCWSLFAQHAFSKLNP 348 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~ 348 (1287)
+++=++|+|++...+...+..+...+....+++.+|++|.+ ..+... .+....+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 45568889999887778888888888776667766655554 444433 2345789999999999998887641 11
Q ss_pred CCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 349 EARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
. ...++..++|.|.....+
T Consensus 207 ----~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ----D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----h----HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999755443
No 200
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0087 Score=69.96 Aligned_cols=105 Identities=20% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHH
Q 000782 163 LVDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 242 (1287)
..+++.+|.++-.++|.+++.-..--+.-+-++++.+|++|||||++|+.+++ .....|.. ++++.-.+..+|-
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeIk- 481 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEIK- 481 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhhc-
Confidence 35668999999999999988633111234568999999999999999999997 44444522 4566555554431
Q ss_pred HHHHHccCCCC--CCCChHHHHHHHHHHcCCCeEEEEEeCC
Q 000782 243 AILESLGESCG--HITQLEPLQSALKRKLTLKRYLLVLDDL 281 (1287)
Q Consensus 243 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv 281 (1287)
+... -..-+..+.+.+++. +-..-|+.+|.|
T Consensus 482 -------GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 482 -------GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred -------ccceeeeccCChHHHHHHHhh-CCCCceEEeehh
Confidence 1100 011223334444433 334567888888
No 201
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00049 Score=70.80 Aligned_cols=109 Identities=26% Similarity=0.303 Sum_probs=74.2
Q ss_pred HhcCCCcccEEEecCCCCcccCccccCCCccceEecCCC--CCc-ccchhhhcccCccEEeecCcccc--cccCCCCCCC
Q 000782 569 LLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNT--SIK-SLPESIAALYNLQTLILYSCRYL--IQLPKHMGDL 643 (1287)
Q Consensus 569 ~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~n~~~--~~lp~~~~~L 643 (1287)
....+..|..|++.+..++.+ ..+..|++|++|++|.| .+. .++-...++++|++|+|++|++. ..++ .+.++
T Consensus 38 l~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhh
Confidence 344566667777777766655 34667888999999988 555 56655667799999999998643 2222 25667
Q ss_pred CCceEEEecCCccccCCcC----CCCCCCCCccCceecCC
Q 000782 644 FNLRFLDIRGCNLQQLPPH----MGGLKNLRTLPSFLVSK 679 (1287)
Q Consensus 644 ~~L~~L~l~~n~l~~lp~~----i~~L~~L~~L~~~~~~~ 679 (1287)
.+|..|++..|..+.+-.. +.-+++|..|+.+.+..
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 7788888888875544322 56677888887776653
No 202
>PRK08118 topology modulation protein; Reviewed
Probab=96.85 E-value=0.0005 Score=68.95 Aligned_cols=34 Identities=35% Similarity=0.626 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccc-cccceeEE
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKDEKVN-DHFELKAW 228 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 228 (1287)
.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854333 45677775
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.85 E-value=0.0013 Score=72.81 Aligned_cols=55 Identities=18% Similarity=0.466 Sum_probs=44.1
Q ss_pred cCCCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 162 SLVDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 162 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+.++++++|.++.++++++++.......+.+.+++.++|++|.||||||+.+++.
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455589999999999999997642212345689999999999999999999874
No 204
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.83 E-value=0.016 Score=69.89 Aligned_cols=177 Identities=17% Similarity=0.174 Sum_probs=92.1
Q ss_pred ccccchhhHHHHHHHHh---cCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 167 RIYGREEDADKLIDFLL---KDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
+++|.++.++++.+.+. ... ..+....+-+.++|++|.|||++|+.++.. ....| +.++.. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~i~~~----~~ 124 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISGS----DF 124 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----eeccHH----HH
Confidence 68888877666655432 110 001123345889999999999999999973 22222 222211 11
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCC----------hhhHhH----hcccCC--CCCCCcE
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGEN----------YNEWEV----LQLPFR--GGAHGSK 304 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----~~~~l~--~~~~gs~ 304 (1287)
.. ...+ .....+...+.......+.+|++||+..-. ...+.. +...+. ....+-.
T Consensus 125 ~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 125 VE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 11 1100 111223333444445577899999983310 011111 111111 1223455
Q ss_pred EEEEcCchhhHh-Hh----cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCc
Q 000782 305 IIVTTRSENVAQ-IV----GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGL 368 (1287)
Q Consensus 305 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (1287)
||.||....... .+ .-...+.++..+.++-.++|..+...... ... .....+++.+.|.
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGF 259 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCC
Confidence 666776543221 11 12357889999998888899887633221 111 1234777777774
No 205
>PRK04296 thymidine kinase; Provisional
Probab=96.76 E-value=0.0023 Score=65.87 Aligned_cols=113 Identities=11% Similarity=-0.051 Sum_probs=62.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCC--CCChHHHHHHHHHHcCC
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGH--ITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 271 (1287)
.++.|+|..|.||||+|..++. +...+...++.+. ..++.......++.+++..... ....+++...+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999998887 3333333333331 1112222233445555532221 2334455555555 334
Q ss_pred CeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchh
Q 000782 272 KRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSEN 313 (1287)
Q Consensus 272 k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 313 (1287)
+.-+||+|.+..-+..+...+...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5568999999543222222333322 235778999998754
No 206
>PRK08181 transposase; Validated
Probab=96.74 E-value=0.0042 Score=67.12 Aligned_cols=100 Identities=24% Similarity=0.199 Sum_probs=53.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
.-+.++|++|+|||.||.++++. .......++|+++ .+++..+..... ....+.. +. .+. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~-~l~-~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IA-KLD-KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HH-HHh-cC
Confidence 45899999999999999999873 2223334555543 344444433211 1122222 22 222 33
Q ss_pred EEEEEeCCCCCChhhHh--HhcccCCCC-CCCcEEEEEcCch
Q 000782 274 YLLVLDDLWGENYNEWE--VLQLPFRGG-AHGSKIIVTTRSE 312 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~--~~~~~l~~~-~~gs~ilvTtR~~ 312 (1287)
=|||+||+.......|. .+...+... ..+ .+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 49999999544332332 232222211 123 588888764
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.73 E-value=0.079 Score=62.46 Aligned_cols=208 Identities=15% Similarity=0.115 Sum_probs=124.2
Q ss_pred CCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccc---c---ccccceeEEEEecCCCCHH
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEK---V---NDHFELKAWAFVSDEFDLV 238 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~---~~~f~~~~wv~~~~~~~~~ 238 (1287)
++.+-+||.|..+|-+.+..--+. ......+.|.|.+|.|||+.+..|.+... . -..|+. +.+..-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHH
Confidence 345669999999998888654222 23445999999999999999999987321 1 122432 334444456789
Q ss_pred HHHHHHHHHccCCCCCCCChHHHHHHHHHHcC-----CCeEEEEEeCCCCCChhhHhHhcccCCC-CCCCcEEEEEcC--
Q 000782 239 KVTKAILESLGESCGHITQLEPLQSALKRKLT-----LKRYLLVLDDLWGENYNEWEVLQLPFRG-GAHGSKIIVTTR-- 310 (1287)
Q Consensus 239 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilvTtR-- 310 (1287)
+++..|.+++.+.. .......+.+..+.. .+..+|++|++..---...+.+-..|.| ..++||++|-+=
T Consensus 473 ~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999997653 233344455555553 4578888998721100011223333333 346777666432
Q ss_pred chhhH---------hHhcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 311 SENVA---------QIVGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 311 ~~~v~---------~~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
..+.. ..+ ....+...|.+.++-.++...+..+.. .-.....+-+|++|+.-.|-.-.|+.+.-++.
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11111 111 224678888998888888877664331 12233455566666666666666665554443
No 208
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.038 Score=59.79 Aligned_cols=189 Identities=16% Similarity=0.129 Sum_probs=106.5
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++-|-++.+++|.+...-+.. -+-..++=|.++|++|.|||-||++|++ +....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc------
Confidence 456788888888887642211 1224566788999999999999999999 455444 33322
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcC-CCeEEEEEeCCCCC-----------Chh-h--HhHhcccCCCC--CCC
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLT-LKRYLLVLDDLWGE-----------NYN-E--WEVLQLPFRGG--AHG 302 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----------~~~-~--~~~~~~~l~~~--~~g 302 (1287)
.++.+..-+. -..+.+.+.+..+ ..+..|.+|.+... +.+ + .-++...+..+ ...
T Consensus 219 --SElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 1233322221 1234444444443 46889999988321 101 1 11122222222 235
Q ss_pred cEEEEEcCchhhHhHh--c---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch----hHHH
Q 000782 303 SKIIVTTRSENVAQIV--G---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP----LAAK 373 (1287)
Q Consensus 303 s~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai~ 373 (1287)
-|||..|...++.... . -.+.++++.-+.+.-.++|+-|+-.-. ..+.-+++ .+++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCchHHHHHHH
Confidence 6899988877665432 2 345788886666666677877763322 22333444 4555555543 4666
Q ss_pred HHHhhhcC
Q 000782 374 ALGGLLRS 381 (1287)
Q Consensus 374 ~~~~~l~~ 381 (1287)
+=|++++-
T Consensus 366 tEAGm~Ai 373 (406)
T COG1222 366 TEAGMFAI 373 (406)
T ss_pred HHHhHHHH
Confidence 66777643
No 209
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.69 E-value=0.0016 Score=66.03 Aligned_cols=101 Identities=27% Similarity=0.259 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
..-+.++|.+|+|||.||.++++.. +. +=..+.|+.+ .+++..+- ... .....+.. +.+. . +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~-~g~~v~f~~~------~~L~~~l~----~~~-~~~~~~~~---~~~l-~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IR-KGYSVLFITA------SDLLDELK----QSR-SDGSYEEL---LKRL-K-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HH-TT--EEEEEH------HHHHHHHH----CCH-CCTTHCHH---HHHH-H-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-cc-CCcceeEeec------Cceecccc----ccc-cccchhhh---cCcc-c-c
Confidence 3569999999999999999998742 22 2224556554 23444332 221 11222222 2222 2 2
Q ss_pred eEEEEEeCCCCCChhhHhH--hcccCCCC-CCCcEEEEEcCch
Q 000782 273 RYLLVLDDLWGENYNEWEV--LQLPFRGG-AHGSKIIVTTRSE 312 (1287)
Q Consensus 273 ~~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtR~~ 312 (1287)
-=||||||+-.....+|.. +...+... ..+ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3478899996655445543 11111110 123 478888754
No 210
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.65 E-value=0.021 Score=72.15 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=69.0
Q ss_pred ccccchhhHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
.++|.+..++.+...+.... ........++.++|++|+|||++|+.++.. . +...+.+..++..+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc----
Confidence 57899999998888876320 011223457899999999999999999873 2 22334555544322111
Q ss_pred HHHHccCCCCC--CCChHHHHHHHHHHcCC-CeEEEEEeCCCCCChhhHhHhcccCCC
Q 000782 244 ILESLGESCGH--ITQLEPLQSALKRKLTL-KRYLLVLDDLWGENYNEWEVLQLPFRG 298 (1287)
Q Consensus 244 i~~~l~~~~~~--~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~~~~~l~~ 298 (1287)
+...++.+.+. ...... +.+.++. ..-+|+||+++..++..+..+...+..
T Consensus 526 ~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11112222211 111222 3333333 345999999987777767766665543
No 211
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.63 E-value=0.0056 Score=67.79 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=68.3
Q ss_pred cchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHcc
Q 000782 170 GREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLG 249 (1287)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 249 (1287)
+|....+...+++..- .. ....+-+.++|..|+|||.||.++++. ....-..+.|+++. .++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~-~~-~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAY-PP-GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHh-hc-cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 4555555555555432 11 123467899999999999999999984 22222345566553 44455544432
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhH--hcccC-CCC-CCCcEEEEEcCc
Q 000782 250 ESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEV--LQLPF-RGG-AHGSKIIVTTRS 311 (1287)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--~~~~l-~~~-~~gs~ilvTtR~ 311 (1287)
. .... ..+.. +. +-=||||||+-.+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~-----~~~~---~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVK---EKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHH---HHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1122 22322 32 34589999997665566753 33333 211 124457888864
No 212
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.00015 Score=73.80 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=73.4
Q ss_pred hhhcccCccceeeeccccccccchhhhhccCCCccceEeeccccccc------cccc-----cccccccccccceecccc
Q 000782 913 ESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLV------LSNQ-----FGLLRNSSLRRLAIWKCS 981 (1287)
Q Consensus 913 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~-----~~~~~~~~L~~L~l~~n~ 981 (1287)
..+..+..+..++||+|..-+.........+.+-+.|.+.+....-. ++.. -.+..||.|+.+++|+|-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 44555778888888888444433333333333333333333211110 0111 134578888888888888
Q ss_pred cccccccccc---cCcCCCcEEEeccccCcCCCCc-------------ccCCCCCCCeEEEecCCCCCccC-----CccC
Q 000782 982 ISLLWPEEGH---ALPDLLECLEIGHCDNLHKLPD-------------GLHSLKSLNTLKIINCPSLAALP-----EIDA 1040 (1287)
Q Consensus 982 ~~~~~~~~~~---~l~~~L~~L~l~~~~~~~~l~~-------------~~~~l~~L~~L~L~~n~~~~~~~-----~~~~ 1040 (1287)
+..-.|+... .-.+.|.+|.+++|..-..-.. -..+-|.|+...+..|++..... .+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 7654443222 2224677777777754332111 12345667777777766643221 1222
Q ss_pred cCCcceEEeccCcc
Q 000782 1041 SSSLRYLQIQQCEA 1054 (1287)
Q Consensus 1041 l~~L~~L~ls~n~~ 1054 (1287)
-.+|+.+.+..|.+
T Consensus 184 h~~lk~vki~qNgI 197 (388)
T COG5238 184 HENLKEVKIQQNGI 197 (388)
T ss_pred hcCceeEEeeecCc
Confidence 24666676766654
No 213
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.00057 Score=70.32 Aligned_cols=108 Identities=20% Similarity=0.087 Sum_probs=54.2
Q ss_pred cCCCCCCcceEEecCccCCcccccccccCccccCCCCCCCCCcceeEEecC--CCCcccccccCCCCCcceEEeccCCCc
Q 000782 1111 LLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNC--MDLISLPDDLYNFICLDKLLISNCPKL 1188 (1287)
Q Consensus 1111 ~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~Ls~n~~~ 1188 (1287)
++..+..|+.|.+.++.++++. .+..+++|+.|.++.| .....++.....+|+|++|++++|.+.
T Consensus 38 l~d~~~~le~ls~~n~gltt~~-------------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT-------------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccccchhhhhhhccceeecc-------------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444555666666666555422 2333555566666555 333334434445566666666666654
Q ss_pred c--ccCCCCCCCCcceEEEecCCCCCcC---cccCCCCCCcCeEeecc
Q 000782 1189 V--SFPAGGLPPNLKSLSISDCENLVTL---PNQMQSMTSLQDLTISN 1231 (1287)
Q Consensus 1189 ~--~~~~~~~~~~L~~L~Ls~n~~~~~~---~~~l~~l~~L~~L~l~~ 1231 (1287)
. .+.....+.+|..|++.+|..+..- -..|.-+++|++||-..
T Consensus 105 ~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 105 DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 2 1222244555666666666554411 01234455555555443
No 214
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.60 E-value=0.066 Score=60.30 Aligned_cols=199 Identities=18% Similarity=0.160 Sum_probs=122.2
Q ss_pred chhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHH-HHHhcccccccccceeEEEEecCC---CCHHHHHHHHHH
Q 000782 171 REEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLA-QVVYKDEKVNDHFELKAWAFVSDE---FDLVKVTKAILE 246 (1287)
Q Consensus 171 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 246 (1287)
|.+.+++|..||.+. .-..|.|.|+-|.||+.|+ .++..+.+. +..+.|.+- .+-...++.++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 667889999999765 3469999999999999999 777764222 455554432 223344555555
Q ss_pred HccCC-----------------------CCC-CCChHH-HHH-------HHHH-------------------Hc---CCC
Q 000782 247 SLGES-----------------------CGH-ITQLEP-LQS-------ALKR-------------------KL---TLK 272 (1287)
Q Consensus 247 ~l~~~-----------------------~~~-~~~~~~-~~~-------~l~~-------------------~l---~~k 272 (1287)
++|-- ... ..+.+. +.. .|++ ++ ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 54321 111 122222 111 1221 11 123
Q ss_pred eEEEEEeCCCCCC---------hhhHhHhcccCCCCCCCcEEEEEcCchhhHhHhc------CcCeEEccCCChhhHHHH
Q 000782 273 RYLLVLDDLWGEN---------YNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIVG------TVPVFHLQELSDNDCWSL 337 (1287)
Q Consensus 273 ~~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~------~~~~~~l~~L~~~~a~~l 337 (1287)
|-+||+|+.-... ..+|..... ..+-.+||++|-+........ ..+.+.|.-.+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6789999984421 234443221 124557999998876555442 346788999999999999
Q ss_pred HHHHHcCCCCC------------CCC----chhhHHHHHHHhhcCCchhHHHHHHhhhcCCCCH
Q 000782 338 FAQHAFSKLNP------------EAR----PSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNV 385 (1287)
Q Consensus 338 f~~~a~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~ 385 (1287)
...+....... ... .....-....++..||==.-+..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 99887432110 000 1234455677888999999999999999887554
No 215
>PRK07261 topology modulation protein; Provisional
Probab=96.59 E-value=0.0044 Score=62.59 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=39.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccc-cccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKDEKVN-DHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
.|.|+|++|+||||||+++....... -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48899999999999999998632211 133444442111 12233445555666666555
Q ss_pred EEEEEeCCC
Q 000782 274 YLLVLDDLW 282 (1287)
Q Consensus 274 ~LlVlDdv~ 282 (1287)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778774
No 216
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.58 E-value=0.01 Score=76.23 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=76.6
Q ss_pred ccccchhhHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
.++|.+..++.+...+.... ........++.++|++|+|||++|+.++.. ....-...+.+.++.......+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~--- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV--- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH---
Confidence 68999999999999886530 011123467889999999999999999873 2111123334444433221111
Q ss_pred HHHHccCCCCC--CCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCC-----------CCcEEEEEcC
Q 000782 244 ILESLGESCGH--ITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGA-----------HGSKIIVTTR 310 (1287)
Q Consensus 244 i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtR 310 (1287)
..-++.+.+. ......+...++. ....+|+||++...++..+..+...+..+. ..+-||+||.
T Consensus 641 -~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 641 -ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred -HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1112222211 1111223333332 233489999998777777777766654331 2344777776
Q ss_pred c
Q 000782 311 S 311 (1287)
Q Consensus 311 ~ 311 (1287)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 4
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.0065 Score=77.22 Aligned_cols=137 Identities=19% Similarity=0.244 Sum_probs=76.1
Q ss_pred CccccchhhHHHHHHHHhcC---cccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKD---VEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~---~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 242 (1287)
+.++|.+..++.+.+.+... .........++.++|++|+|||.+|+.++.. .-+.....+-+.++...+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 47899999999999888532 0112334568899999999999999988763 2111112222233221111 1
Q ss_pred HHHHHccCCCCCC--CChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCC-----------CCcEEEEEc
Q 000782 243 AILESLGESCGHI--TQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGA-----------HGSKIIVTT 309 (1287)
Q Consensus 243 ~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTt 309 (1287)
.+..-++.+.+.. .....+...+++ ...-+|+||++...++..+..+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 1111122222111 112223333433 455799999997766666666665554432 345567776
Q ss_pred Cc
Q 000782 310 RS 311 (1287)
Q Consensus 310 R~ 311 (1287)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 54
No 218
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.0088 Score=69.68 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=110.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
++||-+.....|...+... .-..--...|+-|+||||+|+-++...--.. | ........-...++|-.
T Consensus 17 evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 6799999999999988765 2334456789999999999998876311110 0 00111111111122211
Q ss_pred H-----ccCCCCCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhH
Q 000782 247 S-----LGESCGHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVA 315 (1287)
Q Consensus 247 ~-----l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~ 315 (1287)
. +..+......+++.. .|.+.. ++|.=+.|+|.|+-.....|..+...+.....+.+.|+.|++. .+.
T Consensus 85 g~~~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 1 000000112233322 222222 4566688999997777778888888877666677766666654 343
Q ss_pred h-HhcCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch
Q 000782 316 Q-IVGTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP 369 (1287)
Q Consensus 316 ~-~~~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (1287)
. ....++.|.++.++.++-...+...+-... -....+....|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~----I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG----INIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcC----CccCHHHHHHHHHHcCCCh
Confidence 3 234567899999999998888887763322 2233456667777777744
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.01 Score=67.81 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=86.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccc-------------------ccceeE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND-------------------HFELKA 227 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 227 (1287)
.++|-+....++..+.... ....+.+-++|++|+||||+|..+++...-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhc----CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 3567777888888888654 12334599999999999999999987421111 112344
Q ss_pred EEEecCCCC---HHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcE
Q 000782 228 WAFVSDEFD---LVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSK 304 (1287)
Q Consensus 228 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 304 (1287)
.+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444433 23333444333322110 35678999999966555555566666665566778
Q ss_pred EEEEcCch-hhHhHh-cCcCeEEccCCChh
Q 000782 305 IIVTTRSE-NVAQIV-GTVPVFHLQELSDN 332 (1287)
Q Consensus 305 ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~ 332 (1287)
+|++|... .+...+ ..+..+++.+.+..
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHH
Confidence 88887743 333322 23456777773333
No 220
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.55 E-value=0.013 Score=70.68 Aligned_cols=43 Identities=33% Similarity=0.379 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999998876543 334668999999999999999975
No 221
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.55 E-value=0.0035 Score=64.05 Aligned_cols=130 Identities=20% Similarity=0.220 Sum_probs=63.8
Q ss_pred chhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC----CC-----C----H
Q 000782 171 REEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD----EF-----D----L 237 (1287)
Q Consensus 171 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----~~-----~----~ 237 (1287)
+..+-....+.|.. ..++.+.|++|.|||.||.+.+-+.-..++|+.++++.-.- .. + .
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44555666666653 35999999999999999998887655557888887764221 10 0 0
Q ss_pred HHHHHHHHHHccCCCCCCCChHHHHHH------HHHHcCCC---eEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEE
Q 000782 238 VKVTKAILESLGESCGHITQLEPLQSA------LKRKLTLK---RYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVT 308 (1287)
Q Consensus 238 ~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvT 308 (1287)
.-.+.-+.+.+..-. .....+.+... --.+++|+ ..+||+|++.+....++..+... .+.|||||++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 001111122221110 11112221110 01234554 56999999977666666666444 4568999998
Q ss_pred cCch
Q 000782 309 TRSE 312 (1287)
Q Consensus 309 tR~~ 312 (1287)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 6544
No 222
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.0037 Score=67.23 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=51.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
.-+.++|++|+|||+||..+..... +..+ .+.|+ +..++...+..... ... ....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--ccC
Confidence 4689999999999999999987321 1122 23332 23344444433211 111 12233332 234
Q ss_pred EEEEEeCCCCCChhhHh--HhcccCCC-CCCCcEEEEEcCch
Q 000782 274 YLLVLDDLWGENYNEWE--VLQLPFRG-GAHGSKIIVTTRSE 312 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~ilvTtR~~ 312 (1287)
-+||+||+.......+. .+...+.. -..++ +||||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999543222222 22222211 11244 88888764
No 223
>PRK09183 transposase/IS protein; Provisional
Probab=96.46 E-value=0.006 Score=66.10 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=51.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
..+.|+|++|+|||+||..++.... ..-..+.++.+ .++...+...... .. ....+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 5677999999999999999976321 11123334432 2333333222110 11 122333322 345
Q ss_pred EEEEEeCCCCCChhhHh--HhcccCCC-CCCCcEEEEEcCch
Q 000782 274 YLLVLDDLWGENYNEWE--VLQLPFRG-GAHGSKIIVTTRSE 312 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~--~~~~~l~~-~~~gs~ilvTtR~~ 312 (1287)
-++|+||+.......+. .+...+.. -..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999654333332 23222211 12344 88888754
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.009 Score=63.88 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 45689999999999999999999873 32334678899887 5555443
No 225
>PRK06921 hypothetical protein; Provisional
Probab=96.40 E-value=0.009 Score=64.89 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccc-cceeEEEEe
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-FELKAWAFV 231 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 231 (1287)
...+.++|.+|+|||.||.++++. +..+ ...++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999984 3332 345566664
No 226
>PRK12377 putative replication protein; Provisional
Probab=96.40 E-value=0.0071 Score=64.45 Aligned_cols=102 Identities=22% Similarity=0.113 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.++|.+|+|||.||.++++. .......++++++. +++..+-..... ....+ .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cC
Confidence 357899999999999999999984 33333345666553 344444333211 11111 222223 24
Q ss_pred eEEEEEeCCCCCChhhHhH--hcccCCCC-CCCcEEEEEcCc
Q 000782 273 RYLLVLDDLWGENYNEWEV--LQLPFRGG-AHGSKIIVTTRS 311 (1287)
Q Consensus 273 ~~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtR~ 311 (1287)
-=|||+||+.......|.. +...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5689999995443344443 22222211 112236777764
No 227
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.01 Score=72.17 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=75.2
Q ss_pred CccccchhhHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc---ceeEEEEecCCCCHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF---ELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 239 (1287)
+.++|.+..++.+.+.+.... .......++...+|+.|||||-||++++.. -| +..+-+..|+.-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~Ek-- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEK-- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHH--
Confidence 378999999999998876431 122455678888999999999999998862 22 23333344432111
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeE-EEEEeCCCCCChhhHhHhcccCCCC
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLTLKRY-LLVLDDLWGENYNEWEVLQLPFRGG 299 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~~~~~l~~~ 299 (1287)
..+.+-+|.+.+-.. .++ -..|.+..+.++| +|.||+|...+++....+...+.++
T Consensus 564 --HsVSrLIGaPPGYVG-yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 --HSVSRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHhCCCCCCce-ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 112222344332111 111 2345556666877 8889999777777777776666553
No 228
>PHA00729 NTP-binding motif containing protein
Probab=96.37 E-value=0.013 Score=60.62 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+...|.|+|.+|+||||||..+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999987
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.027 Score=63.10 Aligned_cols=71 Identities=7% Similarity=0.059 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchh-hHhHh-cCcCeEEccCCChhhHHHHHHHH
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSEN-VAQIV-GTVPVFHLQELSDNDCWSLFAQH 341 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~a~~lf~~~ 341 (1287)
+++-++|+|++..-+......+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556688876665555566555544334565666666543 44332 24578999999999998888653
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.34 E-value=0.031 Score=59.74 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc-cccccccceeEEEEecCCCCH-HHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD-EKVNDHFELKAWAFVSDEFDL-VKVTKAI 244 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 244 (1287)
.++|-.++..++-.++... .--+...-|.|+|+.|.|||+|...+..+ .+++++| +-|........ .-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt--~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQT--ILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHH--HHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 4788888888888877543 11234467889999999999998877764 2344444 33444443322 2234444
Q ss_pred HHHc----cCCCCCCCChHHHHHHHHHHcC------CCeEEEEEeCCCCCChhhHhHhcccC-----CCCCCCcEEEEEc
Q 000782 245 LESL----GESCGHITQLEPLQSALKRKLT------LKRYLLVLDDLWGENYNEWEVLQLPF-----RGGAHGSKIIVTT 309 (1287)
Q Consensus 245 ~~~l----~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~~~~~l-----~~~~~gs~ilvTt 309 (1287)
..++ ........+..+....+-..|+ +-+++.|+|.+.-...-.-..+..-+ ....|-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4443 2222122223333334444442 34688888877332111111111111 1134667788999
Q ss_pred CchhhH-------hHhcCcCeEEccCCChhhHHHHHHHHH
Q 000782 310 RSENVA-------QIVGTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 310 R~~~v~-------~~~~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
|-.... .+..-..++-++.+.-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 964322 222222355567778888888887765
No 231
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0089 Score=72.57 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=84.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc-----ceeEEEEecCCCCHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF-----ELKAWAFVSDEFDLVKVT 241 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~ 241 (1287)
.++||++|++++++.|... . .++ -.++|.+|+|||++|.-++.. -+.+.- +..++ +. ++..
T Consensus 171 PvIGRd~EI~r~iqIL~RR-~--KNN---PvLiGEpGVGKTAIvEGLA~r-Iv~g~VP~~L~~~~i~-sL----D~g~-- 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRR-T--KNN---PVLVGEPGVGKTAIVEGLAQR-IVNGDVPESLKDKRIY-SL----DLGS-- 236 (786)
T ss_pred CCcChHHHHHHHHHHHhcc-C--CCC---CeEecCCCCCHHHHHHHHHHH-HhcCCCCHHHcCCEEE-Ee----cHHH--
Confidence 6899999999999999765 1 111 246799999999998877762 111111 11111 00 1111
Q ss_pred HHHHHHccCCCCCCCChHHHHHHHHHHc-CCCeEEEEEeCCCCC---------ChhhHhHhcccCCCCCCCcEEEEEcCc
Q 000782 242 KAILESLGESCGHITQLEPLQSALKRKL-TLKRYLLVLDDLWGE---------NYNEWEVLQLPFRGGAHGSKIIVTTRS 311 (1287)
Q Consensus 242 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtR~ 311 (1287)
+.....-..+.++....+.+.+ +.++..+++|.++.- ..+.-.-+..++..+ .--.|=.||-+
T Consensus 237 ------LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~ 309 (786)
T COG0542 237 ------LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLD 309 (786)
T ss_pred ------HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHH
Confidence 1111112334455555554444 345899999998431 011112223333332 22224445543
Q ss_pred hhhHhHh-------cCcCeEEccCCChhhHHHHHHHHH
Q 000782 312 ENVAQIV-------GTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 312 ~~v~~~~-------~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
+. -..+ ...+.+.+...+.+++..+++-..
T Consensus 310 EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 32 1111 245789999999999999987644
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.018 Score=61.67 Aligned_cols=88 Identities=14% Similarity=0.054 Sum_probs=53.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhccccccccc------ceeEEEEecCCCCHHHHHHHHHHHccCCC---------CCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF------ELKAWAFVSDEFDLVKVTKAILESLGESC---------GHI 255 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~ 255 (1287)
..-.++.|+|.+|.|||++|.+++.. ..... ..++|+.....++...+. .+.+..+... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45679999999999999999998763 22222 467888887776665443 3333322110 012
Q ss_pred CChHHHHHHHHHHcC----CCeEEEEEeCC
Q 000782 256 TQLEPLQSALKRKLT----LKRYLLVLDDL 281 (1287)
Q Consensus 256 ~~~~~~~~~l~~~l~----~k~~LlVlDdv 281 (1287)
.+.+++...+++... .+.-+||+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 344455555544432 34558888887
No 233
>PRK04132 replication factor C small subunit; Provisional
Probab=96.31 E-value=0.068 Score=66.70 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=95.9
Q ss_pred CCCChHHHHHHHHhccccccccc-ceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEe
Q 000782 201 MGGVGKTTLAQVVYKDEKVNDHF-ELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLD 279 (1287)
Q Consensus 201 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 279 (1287)
+.++||||+|..++++. ..+.+ ..++-+.+++..... ..+++++.+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78999999999999842 12222 234556666644444 334444332211000 01245799999
Q ss_pred CCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHH
Q 000782 280 DLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESI 357 (1287)
Q Consensus 280 dv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~ 357 (1287)
++..-+......+...+......+++|++|.+. .+.... ..+..+.+.++++++-.+.+...+.... -....+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg----i~i~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG----LELTEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC----CCCCHHH
Confidence 998777677777777776544566666655543 343332 3467899999999999888877653211 1122457
Q ss_pred HHHHHhhcCCchh-HHHHH
Q 000782 358 GKEIAKKCKGLPL-AAKAL 375 (1287)
Q Consensus 358 ~~~i~~~~~g~PL-ai~~~ 375 (1287)
...|++.++|.+- |+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 714 LQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 8899999999885 44433
No 234
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.31 E-value=0.0094 Score=62.92 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 242 (1287)
..-.++.|+|.+|+|||++|.+++.. .......++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998863 333346789998876 55555443
No 235
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.29 E-value=0.013 Score=58.72 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=32.2
Q ss_pred cccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 168 IYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 168 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+||....+.++++.+..-. ... ..|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh---CCC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 4788888888888775531 122 45669999999999999999974
No 236
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.28 E-value=0.00041 Score=84.63 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCCCCeEEEecCCCCCccC---CccCcCCcceEEeccCccc
Q 000782 1018 LKSLNTLKIINCPSLAALP---EIDASSSLRYLQIQQCEAL 1055 (1287)
Q Consensus 1018 l~~L~~L~L~~n~~~~~~~---~~~~l~~L~~L~ls~n~~~ 1055 (1287)
|++|+.|.+.+|...+... ....+++|++|++++|...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 5666666666665322221 2334566666666666543
No 237
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.0082 Score=61.33 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEE
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWA 229 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 229 (1287)
+..+|.++|++|.||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 444455555554
No 238
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.23 E-value=0.12 Score=58.90 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 172 EEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 172 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+.-.+.+.+.+... ......+|+|.|.=|.|||++.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44556777777654 1256789999999999999999998874
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.23 E-value=0.021 Score=60.80 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=55.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
...+.++|.+|+|||+||.++++. ....-..++++++ .+++..+-..... .....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 357899999999999999999984 2222334555543 3444444333311 111122 2333344 3
Q ss_pred eEEEEEeCCCCCChhhHhH--hcccCCCC-CCCcEEEEEcCc
Q 000782 273 RYLLVLDDLWGENYNEWEV--LQLPFRGG-AHGSKIIVTTRS 311 (1287)
Q Consensus 273 ~~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtR~ 311 (1287)
.=+||+||+......+|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889996655555654 22211110 112347777764
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.23 E-value=0.0045 Score=60.18 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccc-ccccceeEEEEecCCCCHHHHHHHHHHH
Q 000782 169 YGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV-NDHFELKAWAFVSDEFDLVKVTKAILES 247 (1287)
Q Consensus 169 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 247 (1287)
||+...++++.+.+..- ......|.|+|..|+||+++|+.++..... ...|..+ .+... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~----a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL----AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLE- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHH----HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHH-
T ss_pred CCCCHHHHHHHHHHHHH----hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHH-
Confidence 56667777777766543 123356789999999999999988874221 1222111 11110 0 11111
Q ss_pred ccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCC-CCCCcEEEEEcCch
Q 000782 248 LGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRG-GAHGSKIIVTTRSE 312 (1287)
Q Consensus 248 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilvTtR~~ 312 (1287)
+ . +.--++++|+..-+......+...+.. .....|+|.||+..
T Consensus 67 -------------------~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 -------------------Q-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------------H-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------------H-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 1 334577899866655555556555543 24677999999854
No 241
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.22 E-value=0.022 Score=73.02 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=75.7
Q ss_pred CccccchhhHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 242 (1287)
+.++|.+..++.+...+.... .........+.++|+.|+|||+||+.+++. .-+.-...+-+..+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 368999999999988875320 011223456778999999999999999862 1111122333444432221111
Q ss_pred HHHHHccCCCCC--CCChHHHHHHHHHHcCCCe-EEEEEeCCCCCChhhHhHhcccCCCC-----------CCCcEEEEE
Q 000782 243 AILESLGESCGH--ITQLEPLQSALKRKLTLKR-YLLVLDDLWGENYNEWEVLQLPFRGG-----------AHGSKIIVT 308 (1287)
Q Consensus 243 ~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvT 308 (1287)
..-++.+.+. ...... +.+.++.++ -+|+||++...++..+..+...+..+ -..+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1112222111 111222 334444444 58899999777777777776665543 134456666
Q ss_pred cCc
Q 000782 309 TRS 311 (1287)
Q Consensus 309 tR~ 311 (1287)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 242
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.22 E-value=0.089 Score=53.63 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=68.9
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
.++|.|...+.+++--..= ..+...--|.++|.-|+|||+|++++.+ .+.+..-. -|.|.+. +
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F--~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-d---------- 123 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQF--AEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-D---------- 123 (287)
T ss_pred HHhCchHHHHHHHHHHHHH--HcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-H----------
Confidence 6899999888887643221 0112345678999999999999999988 33333322 2333321 0
Q ss_pred HccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHhHhcccCCCC---CCCcEEEEEcCch
Q 000782 247 SLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWG-ENYNEWEVLQLPFRGG---AHGSKIIVTTRSE 312 (1287)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~~~---~~gs~ilvTtR~~ 312 (1287)
..+...+...|+. ..+||+|..||.-- ++...+..+...+..+ .+...++..|.++
T Consensus 124 --------l~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 --------LATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------HhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1111122222222 35899999999943 2345666776666542 3444455555443
No 243
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.16 E-value=0.017 Score=56.53 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=61.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC---CCHHHHHHHHH----HHccCCC-CCCCChHH-----
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE---FDLVKVTKAIL----ESLGESC-GHITQLEP----- 260 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~----~~l~~~~-~~~~~~~~----- 260 (1287)
..|-|++..|.||||+|...+- +..++=..+.++..-+. .....+++.+- .+.+... ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4778888899999999988775 33333334444443332 23333333320 0001100 00011111
Q ss_pred --HHHHHHHHcC-CCeEEEEEeCCCC---CChhhHhHhcccCCCCCCCcEEEEEcCchh
Q 000782 261 --LQSALKRKLT-LKRYLLVLDDLWG---ENYNEWEVLQLPFRGGAHGSKIIVTTRSEN 313 (1287)
Q Consensus 261 --~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 313 (1287)
..+..++.+. ++-=|||||++-. -.....+.+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2222334443 3455999999822 122344455555555556778999999854
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.16 E-value=0.017 Score=61.44 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD 236 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 236 (1287)
..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999999863 223334677887655443
No 245
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.038 Score=54.13 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=71.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE---------------------ecCCC---------------
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF---------------------VSDEF--------------- 235 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~~~~~--------------- 235 (1287)
.-..+.++|++|.||||+.+.+|..++... ..+|+. |-+++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 446899999999999999999997543221 223321 01111
Q ss_pred ------CHHHH---HHHHHHHccCCC------CCCCChHHHHHHHHHHcCCCeEEEEEeCCCC--CChhhHhHhcccCCC
Q 000782 236 ------DLVKV---TKAILESLGESC------GHITQLEPLQSALKRKLTLKRYLLVLDDLWG--ENYNEWEVLQLPFRG 298 (1287)
Q Consensus 236 ------~~~~~---~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~~~l~~ 298 (1287)
...++ ..+.++.++... .+-+.-++..-.|.+.+-+++-+++-|.--. +....|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 11222 222333333221 1223334445567777778899999995411 222455544322222
Q ss_pred CCCCcEEEEEcCchhhHhHhc
Q 000782 299 GAHGSKIIVTTRSENVAQIVG 319 (1287)
Q Consensus 299 ~~~gs~ilvTtR~~~v~~~~~ 319 (1287)
+..|+.||++|-+..+...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 446899999999998877764
No 246
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.08 E-value=0.0033 Score=61.39 Aligned_cols=86 Identities=26% Similarity=0.190 Sum_probs=45.8
Q ss_pred EEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEE
Q 000782 196 IPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYL 275 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 275 (1287)
|.++|.+|+|||+||+.+++ .... ...-+.++...+..++....--. ... ..-....+...++ +..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~~-----~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAMR-----KGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTHH-----EEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-ccc--ccccccccccccc-----ceeE
Confidence 67999999999999999997 3322 22335677777776554322111 000 0000000000111 7899
Q ss_pred EEEeCCCCCChhhHhHhcc
Q 000782 276 LVLDDLWGENYNEWEVLQL 294 (1287)
Q Consensus 276 lVlDdv~~~~~~~~~~~~~ 294 (1287)
+|||++...+...+..+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEESSCGG--HHHHHTTHH
T ss_pred EEECCcccCCHHHHHHHHH
Confidence 9999996544444444443
No 247
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.028 Score=62.77 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=50.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
+.++|+++|++|+||||++..++.. ...+-..+.++..... .....-++...+.++.+.....+.+.+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4589999999999999999999863 2222123444544322 123333444445555443223455556555554432
Q ss_pred C-CeEEEEEeCCC
Q 000782 271 L-KRYLLVLDDLW 282 (1287)
Q Consensus 271 ~-k~~LlVlDdv~ 282 (1287)
. +.=+|++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 23467778663
No 248
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.06 E-value=0.025 Score=60.54 Aligned_cols=88 Identities=19% Similarity=0.111 Sum_probs=53.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhccccccccc-ceeEEEEecCCCC-HHHHHHHHHHHccCC-------CCCCCChHH--
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF-ELKAWAFVSDEFD-LVKVTKAILESLGES-------CGHITQLEP-- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 260 (1287)
+-+.++|.|.+|+||||||+++++ .++.+| +.++++-+++... +.++.+++.+.=... ..+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999998 454455 3456666766543 455555554321111 011111111
Q ss_pred ---HHHHHHHHc--C-CCeEEEEEeCC
Q 000782 261 ---LQSALKRKL--T-LKRYLLVLDDL 281 (1287)
Q Consensus 261 ---~~~~l~~~l--~-~k~~LlVlDdv 281 (1287)
..-.+.+++ + ++.+|+|+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112244454 3 89999999998
No 249
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.06 E-value=0.027 Score=60.82 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhccccccc----ccceeEEEEecCCCCHHHHHHHHHHHc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVND----HFELKAWAFVSDEFDLVKVTKAILESL 248 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 248 (1287)
..-.++.|+|.+|.|||++|.+++....... .-..++|++....++..++ .++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 4568999999999999999999975322222 1357899998887765544 3344443
No 250
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0025 Score=38.92 Aligned_cols=20 Identities=45% Similarity=0.810 Sum_probs=10.5
Q ss_pred cceEecCCCCCcccchhhhc
Q 000782 599 LRYLDLSNTSIKSLPESIAA 618 (1287)
Q Consensus 599 Lr~L~Ls~n~i~~lp~~i~~ 618 (1287)
|++|||++|+|+.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555544443
No 251
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.04 E-value=0.02 Score=63.07 Aligned_cols=88 Identities=25% Similarity=0.179 Sum_probs=48.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
+.++++++|++|+||||++..++.....+..-..+..++..... .....+....+.++.+.....+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999988632222111244555544321 223333444444454433334445555555443 3
Q ss_pred CCeEEEEEeCC
Q 000782 271 LKRYLLVLDDL 281 (1287)
Q Consensus 271 ~k~~LlVlDdv 281 (1287)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.03 E-value=0.0045 Score=58.72 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|+|+|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 253
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.01 E-value=0.089 Score=57.89 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=41.2
Q ss_pred ccCCCCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCH
Q 000782 161 TSLVDDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDL 237 (1287)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 237 (1287)
.+..++.++=..+....+...+... +.|.|.|.+|+||||+|+.++. +....| +.|.+....+.
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~ 103 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSR 103 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCCh
Confidence 3444555555555566677777433 4689999999999999999987 333332 23445544443
No 254
>PRK06696 uridine kinase; Validated
Probab=96.00 E-value=0.014 Score=62.21 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=35.2
Q ss_pred cchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 170 GREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 170 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.|++.+++|.+.+... ..++..+|+|.|.+|.||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3677788888888653 234678999999999999999999987
No 255
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.00 E-value=0.012 Score=65.68 Aligned_cols=102 Identities=23% Similarity=0.220 Sum_probs=53.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
.-+.++|.+|+|||.||.++++. ....-..++|+++.. ++..+...-.. ...+... .+ +.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~~---~~~~~~~---~~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRFN---NDKELEE---VY-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHhc---cchhHHH---HH-HHhcc-C
Confidence 66999999999999999999984 222223556665532 33333221110 1111111 12 22222 2
Q ss_pred EEEEEeCCCCCChhhHhH--hcccCCCC-CCCcEEEEEcCc
Q 000782 274 YLLVLDDLWGENYNEWEV--LQLPFRGG-AHGSKIIVTTRS 311 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtR~ 311 (1287)
=|||+||+..+....|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999996554334432 33222211 124458888875
No 256
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.96 E-value=0.015 Score=62.71 Aligned_cols=135 Identities=20% Similarity=0.249 Sum_probs=74.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc-cccccccceeEE----EEecCCC------
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD-EKVNDHFELKAW----AFVSDEF------ 235 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~------ 235 (1287)
.+-+|..+-.--.++|..+ .+..|.+.|.+|.|||.||.+..=. ...++.|..++- +.++++.
T Consensus 225 Gi~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred ccCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 3446666666667778765 7899999999999999998765432 123344544332 2233321
Q ss_pred ---CHHHHHHHHHHH---ccCCCCCCCChHHHHHHHH---------HHcCCC---eEEEEEeCCCCCChhhHhHhcccCC
Q 000782 236 ---DLVKVTKAILES---LGESCGHITQLEPLQSALK---------RKLTLK---RYLLVLDDLWGENYNEWEVLQLPFR 297 (1287)
Q Consensus 236 ---~~~~~~~~i~~~---l~~~~~~~~~~~~~~~~l~---------~~l~~k---~~LlVlDdv~~~~~~~~~~~~~~l~ 297 (1287)
.+.-.+..|..- +..... .....+...+. .+.+|+ +-+||+|.+.+-.+. ++...+.
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTilt 373 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILT 373 (436)
T ss_pred hhhhccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHH
Confidence 122233333322 222111 11111111111 123453 569999999765443 3444455
Q ss_pred CCCCCcEEEEEcCch
Q 000782 298 GGAHGSKIIVTTRSE 312 (1287)
Q Consensus 298 ~~~~gs~ilvTtR~~ 312 (1287)
..+.||||+.|--..
T Consensus 374 R~G~GsKIVl~gd~a 388 (436)
T COG1875 374 RAGEGSKIVLTGDPA 388 (436)
T ss_pred hccCCCEEEEcCCHH
Confidence 567899999886543
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.012 Score=63.30 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=49.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
+..-+.++|.+|+|||.||.++.++ +...--.+.++++. +++.++...... ......+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDE--------GRLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHhh-
Confidence 4567889999999999999999984 33333345555543 455555544432 111223333222
Q ss_pred CeEEEEEeCCCCCChhhHh
Q 000782 272 KRYLLVLDDLWGENYNEWE 290 (1287)
Q Consensus 272 k~~LlVlDdv~~~~~~~~~ 290 (1287)
+-=||||||+-.+....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2238999999665444444
No 258
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.14 Score=62.05 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=100.5
Q ss_pred ccccchh---hHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 167 RIYGREE---DADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~---~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
++.|-|+ |+.++++.|..+. +-+..-++=+-++|++|.|||-||++++-.. . +=|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--g-----VPF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--G-----VPFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--C-----CceeeechH------
Confidence 5667664 4566666665441 0123345678899999999999999999742 2 234555542
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHc-CCCeEEEEEeCCCCCC---------------hhhHhHhcccCCCCC--CC
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKL-TLKRYLLVLDDLWGEN---------------YNEWEVLQLPFRGGA--HG 302 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------------~~~~~~~~~~l~~~~--~g 302 (1287)
+..+.+.+.. ....+.+.... ...+.+|.+|++.... .....++...+.... .+
T Consensus 379 --EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2233322211 11122222222 3467888888773210 112223322222222 22
Q ss_pred cEEEEEcCchhhHhHh--c---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhH
Q 000782 303 SKIIVTTRSENVAQIV--G---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLA 371 (1287)
Q Consensus 303 s~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 371 (1287)
--++-+|+..++.... . -++.+.++.-+...-.++|..++-..... .+..++++ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 3344466666654432 1 24578899999999999999988544332 24445565 88888887744
No 259
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.092 Score=60.64 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=101.8
Q ss_pred ccccchhhHHHHHHHHhcCcc------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
++-|.++.++++.+++..--. -+-...+=|.++|++|.|||.||++++.+ ..-. |+.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vP-----f~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVP-----FLSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCc-----eEeecch------
Confidence 677899999998887753210 01234567889999999999999999984 3322 3444332
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCCh-hhH----------hHhccc---CCC-CCCCcEE
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENY-NEW----------EVLQLP---FRG-GAHGSKI 305 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~----------~~~~~~---l~~-~~~gs~i 305 (1287)
+|+..+. ....+.+.+.+.+.-..-++++++|++.-..+ .+| .++... +.. ...|-.|
T Consensus 258 --eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 258 --EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred --hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 2222221 12334444445555567899999999843211 011 111111 111 1113333
Q ss_pred EE---EcCchhhHhHh---c-CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCC----chhHHHH
Q 000782 306 IV---TTRSENVAQIV---G-TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKG----LPLAAKA 374 (1287)
Q Consensus 306 lv---TtR~~~v~~~~---~-~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g----~PLai~~ 374 (1287)
|| |+|...+-... + -.+.|.+.--++.+-.+++...+-+-.- ...-++. +|++..-| -=.|+..
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d~~----qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFDFK----QLAKLTPGFVGADLMALCR 405 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcCHH----HHHhcCCCccchhHHHHHH
Confidence 33 44544332222 2 2356788877777777777766533222 1122333 45555444 3456666
Q ss_pred HHhhhcC
Q 000782 375 LGGLLRS 381 (1287)
Q Consensus 375 ~~~~l~~ 381 (1287)
.|+..+-
T Consensus 406 ~Aa~vAi 412 (802)
T KOG0733|consen 406 EAAFVAI 412 (802)
T ss_pred HHHHHHH
Confidence 6655543
No 260
>PHA02244 ATPase-like protein
Probab=95.89 E-value=0.052 Score=60.31 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=30.6
Q ss_pred CCCCccccchhhH----HHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 163 LVDDRIYGREEDA----DKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 163 ~~~~~~vGr~~~~----~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.++..++|..... .++..++... .-|.|+|++|+|||++|+++++
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHH
Confidence 3444666654443 4444444332 3567899999999999999997
No 261
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.89 E-value=0.045 Score=69.48 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++.|.++.++++.+++.-... -+-...+-+.++|++|+|||++|+.+++. ....| +.++.. .
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP----E 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----H
Confidence 688999999998887642100 01123456889999999999999999873 33222 222211 1
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCC-----------hhhHhHhcccCCCC-CCCcEEEE
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGEN-----------YNEWEVLQLPFRGG-AHGSKIIV 307 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~~~~~l~~~-~~gs~ilv 307 (1287)
+ ..... ....+.+...+.......+.+|++|++.... ......+...+... ..+..++|
T Consensus 248 i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 I----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred H----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 1 10000 0111222233333335567899999983210 00111222222211 12333444
Q ss_pred -EcCchh-hHhHhc----CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 308 -TTRSEN-VAQIVG----TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 308 -TtR~~~-v~~~~~----~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
||.... +...+. -...+.+...+.++-.+++..+.-...- .. ......+++.+.|.--
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc----ccCHHHHHHhCCCCCH
Confidence 554332 211111 1246778888888888888865422111 11 1124577888887653
No 262
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.88 E-value=0.018 Score=59.28 Aligned_cols=87 Identities=24% Similarity=0.130 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCC---CCCChHH-HHHHHHH
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCG---HITQLEP-LQSALKR 267 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~~ 267 (1287)
++++.++|+.|+||||.+.+++... +.+-..+..++.... ....+-++..++.++.+.. ...+..+ +.+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999999888777632 222335666665432 3456677778888876532 1222323 2233443
Q ss_pred HcCCCeEEEEEeCC
Q 000782 268 KLTLKRYLLVLDDL 281 (1287)
Q Consensus 268 ~l~~k~~LlVlDdv 281 (1287)
.-..+.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32222336777755
No 263
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.88 E-value=0.08 Score=67.30 Aligned_cols=178 Identities=16% Similarity=0.141 Sum_probs=93.4
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVK 239 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 239 (1287)
++.|.+..++++.+.+.-... .+-...+-+.++|++|.|||++|+++++. ....| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~----- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP----- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH-----
Confidence 577888888777776542100 01123455788999999999999999983 33333 222211
Q ss_pred HHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCC--------Ch----hhHhHhcccCCC--CCCCcEE
Q 000782 240 VTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGE--------NY----NEWEVLQLPFRG--GAHGSKI 305 (1287)
Q Consensus 240 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~~~~~~l~~--~~~gs~i 305 (1287)
+++....+ .....+...+...-...+.+|++|++..- +. .....+...+.. ...+.-|
T Consensus 522 ---~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 522 ---EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ---HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 11111110 11112222223333456899999998321 00 011122222221 1234456
Q ss_pred EEEcCchhhHhHh-----cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCch
Q 000782 306 IVTTRSENVAQIV-----GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLP 369 (1287)
Q Consensus 306 lvTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (1287)
|.||...+..... .-...+.++..+.++-.++|+.+.-+..- ....+ ...+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 6677665443221 12357888999999988999866532211 11112 345677777654
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.82 E-value=0.0068 Score=70.50 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+++|.++.+++|++.|......-..+.+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6899999999999998432111234568999999999999999999986
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.79 E-value=0.023 Score=62.64 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=55.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCC-----CCCCChHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESC-----GHITQLEPLQSAL 265 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 265 (1287)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++... .+....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33334567788777665543 345554332 1233455555555
Q ss_pred HHHcC-CCeEEEEEeCC
Q 000782 266 KRKLT-LKRYLLVLDDL 281 (1287)
Q Consensus 266 ~~~l~-~k~~LlVlDdv 281 (1287)
....+ +..-+||+|-|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55553 45679999988
No 266
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.74 E-value=0.033 Score=69.36 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=67.0
Q ss_pred ccccchhhHHHHHHHHhcCc---ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDV---EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
.++|.++.++.|.+.+...- .........+.++|++|+|||++|+.++.. ... ..+.+.++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----c
Confidence 57899999999988876320 011233567899999999999999999873 222 23344444332211 1
Q ss_pred HHHHccCCCCCCCChHHHHHHHHHHcC-CCeEEEEEeCCCCCChhhHhHhcccCC
Q 000782 244 ILESLGESCGHITQLEPLQSALKRKLT-LKRYLLVLDDLWGENYNEWEVLQLPFR 297 (1287)
Q Consensus 244 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~~~l~ 297 (1287)
+.+-++.+.+.... + ....+.+.++ ...-+|+||++...+...+..+...+.
T Consensus 530 ~~~LiG~~~gyvg~-~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 VSRLIGAPPGYVGF-D-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHHcCCCCCcccc-c-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11222322211110 0 0112223332 234699999997766666666655443
No 267
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.031 Score=65.84 Aligned_cols=83 Identities=27% Similarity=0.287 Sum_probs=56.0
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 190 DDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 190 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
.+..+++.+.|++|+||||||.-++++.- | .++=+.+|+.-+...+-..|...+... ..+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~---------------s~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNH---------------SVL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhc---------------ccc
Confidence 45678999999999999999999987422 2 355677787777666666555544322 122
Q ss_pred --CCCeEEEEEeCCCCCChhhHhHh
Q 000782 270 --TLKRYLLVLDDLWGENYNEWEVL 292 (1287)
Q Consensus 270 --~~k~~LlVlDdv~~~~~~~~~~~ 292 (1287)
.+++.-||+|.+........+.+
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHH
Confidence 26889999999965543333333
No 268
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.71 E-value=0.19 Score=51.75 Aligned_cols=176 Identities=18% Similarity=0.177 Sum_probs=95.6
Q ss_pred ccccchhhH---HHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 167 RIYGREEDA---DKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 167 ~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
++||.++.. .-|.+.|..+..-++-..+-|..+|++|.|||-+|+++++. .+-.| +.+-. ..-
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka-------t~l 187 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA-------TEL 187 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech-------HHH
Confidence 688987665 34566676553334556789999999999999999999984 33222 22211 111
Q ss_pred HHHHccCCCCCCCChHHHHHHHHHHc-CCCeEEEEEeCCCCCC--------hhhH----hHhcccCCC--CCCCcEEEEE
Q 000782 244 ILESLGESCGHITQLEPLQSALKRKL-TLKRYLLVLDDLWGEN--------YNEW----EVLQLPFRG--GAHGSKIIVT 308 (1287)
Q Consensus 244 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~~~~----~~~~~~l~~--~~~gs~ilvT 308 (1287)
|-+.+| +....+..+.+.. +.-++++.+|.+.... ..+. ..+...+.. .+.|...|-.
T Consensus 188 iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 222222 1222233333332 3468999999873210 0111 112212211 2346555666
Q ss_pred cCchhhHhHhc---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCc
Q 000782 309 TRSENVAQIVG---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGL 368 (1287)
Q Consensus 309 tR~~~v~~~~~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (1287)
|.........- -...++..--+++|-.+++..++-.-.-+.+ .-.+.++++.+|.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-----~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-----ADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc-----cCHHHHHHHhCCC
Confidence 66655543321 1245777777889999999888733221111 1145566666664
No 269
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.70 E-value=0.036 Score=58.35 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=70.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC-----CCCHHHHHHHHHHHccCCCC------CCCChHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD-----EFDLVKVTKAILESLGESCG------HITQLEP 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 260 (1287)
+-.+++|||.+|.||||+|+.+.. ..+--.+.+++.-.+ .....+...++++.++.... ..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 447999999999999999999986 222222333333211 22234456677777764431 1112222
Q ss_pred H-HHHHHHHcCCCeEEEEEeCCCCC-ChhhHhHhcccCCC--CCCCcEEEEEcCchhhHhHhc
Q 000782 261 L-QSALKRKLTLKRYLLVLDDLWGE-NYNEWEVLQLPFRG--GAHGSKIIVTTRSENVAQIVG 319 (1287)
Q Consensus 261 ~-~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 319 (1287)
. .-.+.+.+.-++-++|.|..-+. |...-.++...+.+ ...|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 2 33466777888999999986321 11111222222221 223556777777777776654
No 270
>PTZ00494 tuzin-like protein; Provisional
Probab=95.68 E-value=1.3 Score=49.79 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
..+|.|++|-..+.+.|... ....++++.+.|.-|.||++|.+.....+.. ..++|.+... ++.++.+.
T Consensus 371 ~~~V~R~~eE~~vRqvL~ql---d~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQM---APSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred ccccchhhHHHHHHHHHhhc---cCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHHH
Confidence 37999999988888888665 2346799999999999999999988764332 3566777654 45678888
Q ss_pred HHccCCCCCC--CChHHHHHHHH---HHcCCCeEEEEEeCCCCCC-hhhHhHhcccCCCCCCCcEEEEEcCchhhHhHh-
Q 000782 246 ESLGESCGHI--TQLEPLQSALK---RKLTLKRYLLVLDDLWGEN-YNEWEVLQLPFRGGAHGSKIIVTTRSENVAQIV- 318 (1287)
Q Consensus 246 ~~l~~~~~~~--~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~-~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~~- 318 (1287)
+.++.+..+. +-++.+.+..+ ....++.-+||+-==...+ ...+.+.. .+.....-|.|++----+.+....
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhc
Confidence 8888765322 23333333333 2345666666654211111 01111111 222233456677654433322111
Q ss_pred --cCcCeEEccCCChhhHHHHHHHHH
Q 000782 319 --GTVPVFHLQELSDNDCWSLFAQHA 342 (1287)
Q Consensus 319 --~~~~~~~l~~L~~~~a~~lf~~~a 342 (1287)
..-..|-+++++.++|.++-.+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 123468899999999998877653
No 271
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.68 E-value=0.0006 Score=68.00 Aligned_cols=91 Identities=23% Similarity=0.191 Sum_probs=81.3
Q ss_pred hHHHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCC
Q 000782 566 THDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFN 645 (1287)
Q Consensus 566 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~ 645 (1287)
+..-+..++..++||++.|++..+-..|..+..|..|+++.|.|..+|+.++.+..+..+++..|. ....|.+++++++
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPH 112 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCC
Confidence 333456788999999999999988888999999999999999999999999999999999998874 7889999999999
Q ss_pred ceEEEecCCccc
Q 000782 646 LRFLDIRGCNLQ 657 (1287)
Q Consensus 646 L~~L~l~~n~l~ 657 (1287)
++++++.+|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999998754
No 272
>PRK13695 putative NTPase; Provisional
Probab=95.68 E-value=0.011 Score=60.30 Aligned_cols=22 Identities=41% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 273
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.67 E-value=0.027 Score=62.21 Aligned_cols=84 Identities=20% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCC-----CCCCChHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESC-----GHITQLEPLQSAL 265 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 265 (1287)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+. .+..+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999998763 33334567888887766643 344444321 1233455555555
Q ss_pred HHHcC-CCeEEEEEeCC
Q 000782 266 KRKLT-LKRYLLVLDDL 281 (1287)
Q Consensus 266 ~~~l~-~k~~LlVlDdv 281 (1287)
...++ +..-+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55553 45678999987
No 274
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.63 E-value=0.072 Score=62.92 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=80.1
Q ss_pred ccccchhhHHHHHHHHh---cC-cccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHH
Q 000782 167 RIYGREEDADKLIDFLL---KD-VEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTK 242 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---~~-~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 242 (1287)
++.|.+..++.+.+... .. ...+-...+-|.++|++|.|||.+|+++++. ....| +-+..+ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~--- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K--- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H---
Confidence 56777766655544221 10 0011234567889999999999999999983 33222 111111 1
Q ss_pred HHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCC-------hh-hH----hHhcccCCCCCCCcEEEEEcC
Q 000782 243 AILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGEN-------YN-EW----EVLQLPFRGGAHGSKIIVTTR 310 (1287)
Q Consensus 243 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~-~~----~~~~~~l~~~~~gs~ilvTtR 310 (1287)
+..... ......+.+.+...-...+++|++|++..-- .. .- ..+...+.....+--||.||.
T Consensus 295 -l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 295 -LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred -hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 110000 0111122222222223578999999984210 00 00 111111222233444566776
Q ss_pred chhhH-hHh----cCcCeEEccCCChhhHHHHHHHHHcC
Q 000782 311 SENVA-QIV----GTVPVFHLQELSDNDCWSLFAQHAFS 344 (1287)
Q Consensus 311 ~~~v~-~~~----~~~~~~~l~~L~~~~a~~lf~~~a~~ 344 (1287)
..... ..+ .-...+.++..+.++-.++|..+...
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 54321 122 12357889989999999999887644
No 275
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.63 E-value=0.038 Score=61.44 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=43.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccc----cccceeEEEEecCCCCHHHHHHHHHHHccCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVN----DHFELKAWAFVSDEFDLVKVTKAILESLGES 251 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 251 (1287)
..-.++-|+|.+|+|||+++.+++-..... +.=..++|++....++.+++. +++++++.+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 355899999999999999999876422211 112478999999888888764 456666543
No 276
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.63 E-value=0.014 Score=58.50 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=43.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccC---CCCCCCChHHHHHHHHHHcCC
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGE---SCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
++.|.|.+|.||||+|..+... ... .++++.-....+ .+..+.|...... ..........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999999863 111 233443333333 3344444322221 111122233344555554433
Q ss_pred CeEEEEEeCC
Q 000782 272 KRYLLVLDDL 281 (1287)
Q Consensus 272 k~~LlVlDdv 281 (1287)
.-++|+|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237889987
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.58 E-value=0.079 Score=54.22 Aligned_cols=122 Identities=18% Similarity=0.134 Sum_probs=63.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEec--CCCCHHHHH------HHHHHHccCCCC------CCCC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVS--DEFDLVKVT------KAILESLGESCG------HITQ 257 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~i~~~l~~~~~------~~~~ 257 (1287)
+-.+++|+|..|.|||||++.++... ......+++.-. ...+..... .++++.++.... .-..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34699999999999999999998632 122333333211 111111111 124455443211 1122
Q ss_pred hHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHhHhcccCCCC-CC-CcEEEEEcCchhhHh
Q 000782 258 LEPLQSALKRKLTLKRYLLVLDDLWG-ENYNEWEVLQLPFRGG-AH-GSKIIVTTRSENVAQ 316 (1287)
Q Consensus 258 ~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~~~-~~-gs~ilvTtR~~~v~~ 316 (1287)
-+...-.+.+.+-..+-++++|+.-. -|....+.+...+..- .. |..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22233345555666788999998732 2333334444433321 12 567888887766543
No 278
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.56 E-value=0.067 Score=52.27 Aligned_cols=106 Identities=21% Similarity=0.161 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
-.+++|+|..|.|||||++.+..-.. .....+|+.-.. .++.-. +-..-+...-.+.+.+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999986321 122333331100 000000 0111122223345555567
Q ss_pred eEEEEEeCCCC-CChhhHhHhcccCCCCCCCcEEEEEcCchhhHhH
Q 000782 273 RYLLVLDDLWG-ENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQI 317 (1287)
Q Consensus 273 ~~LlVlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~~ 317 (1287)
+-++++|+.-. -|......+...+... +..||++|.+......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77899998732 2333344444433332 2357777776655433
No 279
>PRK09354 recA recombinase A; Provisional
Probab=95.56 E-value=0.034 Score=61.89 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCC-----CCCCChHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESC-----GHITQLEPLQSAL 265 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 265 (1287)
+.-+++-|+|++|+||||||.+++.. ....-..++|+.....++.. .+++++.+. .+....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33344567899888777653 345554432 1233455555555
Q ss_pred HHHcC-CCeEEEEEeCC
Q 000782 266 KRKLT-LKRYLLVLDDL 281 (1287)
Q Consensus 266 ~~~l~-~k~~LlVlDdv 281 (1287)
...++ +..-+||+|-|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55553 45679999988
No 280
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.56 E-value=0.043 Score=55.25 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD 236 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 236 (1287)
++.|+|.+|+||||+|..++.. ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 222334677777765543
No 281
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.39 Score=56.57 Aligned_cols=55 Identities=25% Similarity=0.176 Sum_probs=36.4
Q ss_pred ccccchhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc
Q 000782 167 RIYGREEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF 223 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f 223 (1287)
++-|-|+.+.++.+...-+.. -+-...+-|-.+|+||.|||++|+++++ ..+..|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 444566666666554432211 1224567888999999999999999998 444445
No 282
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.54 E-value=0.08 Score=61.69 Aligned_cols=87 Identities=21% Similarity=0.146 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
.+++.++|++|+||||++..++........-..+..++....- .....++...+.++.+.....+.+.+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4699999999999999988887532201222345566553321 122233444444554433334445555555543 3
Q ss_pred CeEEEEEeCC
Q 000782 272 KRYLLVLDDL 281 (1287)
Q Consensus 272 k~~LlVlDdv 281 (1287)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3467888976
No 283
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.064 Score=60.52 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccc----cceeEEEEecCCCCHHHHHHHHHHHcc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH----FELKAWAFVSDEFDLVKVTKAILESLG 249 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 249 (1287)
....++-|+|.+|+|||++|.+++........ =..++|++....++..++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 35689999999999999999999863222111 1478999998888877664 4445554
No 284
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0007 Score=69.45 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=34.3
Q ss_pred cccEEEecCCCCcccCccccCCCccceEecCCCCCcccchhhhcccCccEEeecCccccccc-CCCCCCCCCceEEEecC
Q 000782 575 RLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQL-PKHMGDLFNLRFLDIRG 653 (1287)
Q Consensus 575 ~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~l-p~~~~~L~~L~~L~l~~ 653 (1287)
+.+.|++-||.++.+ ..+.+|+.|++|.||-|.|++| +.+..+++|+.|+|+.|.+...- -..+.+|++||.|-|..
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 344444444444443 2233445555555555555544 23445555555555544321110 01234444555555444
Q ss_pred C
Q 000782 654 C 654 (1287)
Q Consensus 654 n 654 (1287)
|
T Consensus 98 N 98 (388)
T KOG2123|consen 98 N 98 (388)
T ss_pred C
Confidence 4
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.49 E-value=0.092 Score=60.99 Aligned_cols=88 Identities=17% Similarity=0.070 Sum_probs=48.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCC---CCChHHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGH---ITQLEPLQSALK 266 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 266 (1287)
....+|.++|.+|+||||+|..++.. ....-..++.+++... +...+.++.+.++++.+... ..+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999873 2222123444444321 22344556666666543221 122222222222
Q ss_pred HHcCCCeEEEEEeCC
Q 000782 267 RKLTLKRYLLVLDDL 281 (1287)
Q Consensus 267 ~~l~~k~~LlVlDdv 281 (1287)
+.+.+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 233333 46777776
No 286
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.48 E-value=0.039 Score=61.55 Aligned_cols=87 Identities=23% Similarity=0.185 Sum_probs=52.0
Q ss_pred CeEEEEEEcCCCChHHH-HHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 192 GMCVIPLVGMGGVGKTT-LAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
+.++|++||+.|+|||| ||+..++-.. ...=..+..++.... .....-++..++-++.+.....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999996 6666654221 122235666665443 2344556666777776655555666665555443
Q ss_pred CCCeEEEEEeCC
Q 000782 270 TLKRYLLVLDDL 281 (1287)
Q Consensus 270 ~~k~~LlVlDdv 281 (1287)
+++ =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34555655
No 287
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.48 Score=52.25 Aligned_cols=158 Identities=10% Similarity=0.024 Sum_probs=90.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhccc---c---cc--cccceeEEEEe-cCCCCHHHHHHHHHHHccCCCCCCCChHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDE---K---VN--DHFELKAWAFV-SDEFDLVKVTKAILESLGESCGHITQLEPLQ 262 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 262 (1287)
-.++.-++|..|.||+++|..+.+.. . .. .|=+...++.. +....++++ +++.+.+....
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 34677799999999999999887631 0 01 11112222221 111222222 22333221110
Q ss_pred HHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcC-chhhHhH-hcCcCeEEccCCChhhHHHHHHH
Q 000782 263 SALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTR-SENVAQI-VGTVPVFHLQELSDNDCWSLFAQ 340 (1287)
Q Consensus 263 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR-~~~v~~~-~~~~~~~~l~~L~~~~a~~lf~~ 340 (1287)
+-++++=++|+|++..........+...+.....++.+|++|. ...+... ...+..+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 0124677888999866655566777777776666777776554 4444433 34567899999999999887765
Q ss_pred HHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHH
Q 000782 341 HAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKAL 375 (1287)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 375 (1287)
.. . .++.++.++...+|.=-|+..+
T Consensus 161 ~~---~-------~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 KN---K-------EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred cC---C-------ChhHHHHHHHHcCCHHHHHHHH
Confidence 31 1 1234666676777733555553
No 288
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.47 E-value=0.079 Score=53.49 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=63.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhccc---ccccc---cc--eeEEEEecCCCCHHHHHHHHHHHccCCCC----CCC---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDE---KVNDH---FE--LKAWAFVSDEFDLVKVTKAILESLGESCG----HIT--- 256 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~--- 256 (1287)
.-.+++|+|+.|.|||||.+.+..+. ++... |. .+.| +.+ .+.++.++.... ...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321 11111 11 1222 222 355666654321 111
Q ss_pred ChHHHHHHHHHHcCCC--eEEEEEeCCCC-CChhhHhHhcccCCC-CCCCcEEEEEcCchhhHhHhcCcCeEEc
Q 000782 257 QLEPLQSALKRKLTLK--RYLLVLDDLWG-ENYNEWEVLQLPFRG-GAHGSKIIVTTRSENVAQIVGTVPVFHL 326 (1287)
Q Consensus 257 ~~~~~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l 326 (1287)
.-+...-.+.+.+-.+ +-++++|+.-. -+....+.+...+.. ...|..||++|.+...... ..+.+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1122223344445555 67888898632 223333334333332 1135668888887766542 3344444
No 289
>PRK08233 hypothetical protein; Provisional
Probab=95.45 E-value=0.036 Score=57.00 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 290
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.45 E-value=0.08 Score=54.08 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
-.+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999863
No 291
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.033 Score=63.13 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC-CCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD-EFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
+..++.++|++|+||||+|.+++........+ .+..++... .......++..++.++.+.....+...+...++ +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 35789999999999999999998632222222 233333222 122334445555555543322222222333332 1
Q ss_pred CCeEEEEEeCC
Q 000782 271 LKRYLLVLDDL 281 (1287)
Q Consensus 271 ~k~~LlVlDdv 281 (1287)
...=+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 23345888843
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.013 Score=55.73 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.--|+|.|++|+||||+++.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 456899999999999999999973
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.043 Score=61.93 Aligned_cols=89 Identities=21% Similarity=0.132 Sum_probs=52.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC-CCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD-EFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
+.+++.++|+.|+||||++.+++.....+.....+.+++... .....+-++...+.++.+.....+...+...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 347999999999999999999987321111123455555332 2234555666666666654333343444444443 34
Q ss_pred CCeEEEEEeCCC
Q 000782 271 LKRYLLVLDDLW 282 (1287)
Q Consensus 271 ~k~~LlVlDdv~ 282 (1287)
++ =+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456689874
No 294
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.40 E-value=0.06 Score=53.86 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=43.4
Q ss_pred EEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH--HccCC-CCCCCChHHHHHHHHHHcCCC
Q 000782 196 IPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE--SLGES-CGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~--~l~~~-~~~~~~~~~~~~~l~~~l~~k 272 (1287)
+.|.|.+|.|||++|.++... ....++++.-.+.++.+ ..+.|.. +.... .........+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999999863 22356666666666542 3333322 11111 11122233344444222 2 2
Q ss_pred eEEEEEeCC
Q 000782 273 RYLLVLDDL 281 (1287)
Q Consensus 273 ~~LlVlDdv 281 (1287)
.-.|++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.057 Score=62.93 Aligned_cols=89 Identities=21% Similarity=0.113 Sum_probs=47.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
..++++|+|.+|+||||++.+++.....+.....+..++.... ......++...+.++.......+...+...+++. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 4579999999999999999888762111111233444544221 1222333333344443322233444455445443 3
Q ss_pred CCeEEEEEeCCC
Q 000782 271 LKRYLLVLDDLW 282 (1287)
Q Consensus 271 ~k~~LlVlDdv~ 282 (1287)
+ .=+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4578888773
No 296
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.18 Score=51.19 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=100.5
Q ss_pred ccccc-hhhHHHHHHHHhcCcc-------cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHH
Q 000782 167 RIYGR-EEDADKLIDFLLKDVE-------ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLV 238 (1287)
Q Consensus 167 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 238 (1287)
++||+ +..+++|.+.+.-+.. -+-.+.+-+.++|++|.|||-||++|+++ ....|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 56664 6666766665432210 02245677889999999999999999973 34556777653
Q ss_pred HHHHHHHHHccCCCCCCCChHHHHHHHHHHc-CCCeEEEEEeCCCCC-----------C-hhhHh--HhcccCCC--CCC
Q 000782 239 KVTKAILESLGESCGHITQLEPLQSALKRKL-TLKRYLLVLDDLWGE-----------N-YNEWE--VLQLPFRG--GAH 301 (1287)
Q Consensus 239 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~-~~~~~--~~~~~l~~--~~~ 301 (1287)
++.+..-+.. ..+.+.+.-.. ..-+-+|.+|.+.+. + ..+.. ++...+.. ..+
T Consensus 216 ----elvqk~igeg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ----ELVQKYIGEG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred ----HHHHHHhhhh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 2222221110 11111111111 235678888877431 0 01111 11112221 234
Q ss_pred CcEEEEEcCchhhHhHh--c---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHH
Q 000782 302 GSKIIVTTRSENVAQIV--G---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALG 376 (1287)
Q Consensus 302 gs~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 376 (1287)
.-+||+.|..-++.... . ..+.++..+-+++.-.++++-+.-.-. -...-.++.+|+++....|.--.++.+=|
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn-l~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN-LTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc-hhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 56788877665554332 1 345688888888887788776542211 11122456666665544444445555555
Q ss_pred hhh
Q 000782 377 GLL 379 (1287)
Q Consensus 377 ~~l 379 (1287)
++.
T Consensus 365 gm~ 367 (404)
T KOG0728|consen 365 GMY 367 (404)
T ss_pred hHH
Confidence 554
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=95.38 E-value=0.078 Score=59.28 Aligned_cols=88 Identities=22% Similarity=0.166 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC--CHHHHHHHHHHHccCCCCC---CCChHH-HHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF--DLVKVTKAILESLGESCGH---ITQLEP-LQSAL 265 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~---~~~~~~-~~~~l 265 (1287)
+..++.++|++|+||||++..++.... ...+ .++.+.. +.+ .....++...+.++.+... ..+... ....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876321 1223 3333432 222 2334456666776654321 122222 22333
Q ss_pred HHHc-CCCeEEEEEeCCCC
Q 000782 266 KRKL-TLKRYLLVLDDLWG 283 (1287)
Q Consensus 266 ~~~l-~~k~~LlVlDdv~~ 283 (1287)
+..- .+.. +|++|-+-.
T Consensus 216 ~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHhCCCC-EEEEECCCc
Confidence 3322 2333 888998744
No 298
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.36 E-value=0.071 Score=61.69 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=47.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCC---CCCChHHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCG---HITQLEPLQSALKR 267 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 267 (1287)
...++.++|.+|+||||.|..++.....+..+ .++.|++... +...+.++...++.+.+.. ...++..+.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998887632111222 3333443321 1223344455555554321 12334344333333
Q ss_pred HcCCCeE-EEEEeCCC
Q 000782 268 KLTLKRY-LLVLDDLW 282 (1287)
Q Consensus 268 ~l~~k~~-LlVlDdv~ 282 (1287)
....+.| +||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3333334 77777663
No 299
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.36 E-value=0.21 Score=48.15 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=59.4
Q ss_pred chhhHHHHHHHHHHHHhcChHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHHhhhhHhH
Q 000782 3 VAEVFLSAFLQVLFDRLASPELLNVATRWKIDAELKNLTLLASKINVVLRDAEEKQV-KDMAVRMWLDELRDVADDAEDV 81 (1287)
Q Consensus 3 ~a~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~ 81 (1287)
+|+.+++|+++.+++.+.........+....+.-+++|+.+++.|.-++++.+.... .+..-+.-++++.+...+++++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 566666666666666655554444444445678899999999999999999887432 2222256788888999999999
Q ss_pred Hhhhh
Q 000782 82 LDEFS 86 (1287)
Q Consensus 82 ld~~~ 86 (1287)
+..|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 98874
No 300
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.039 Score=58.50 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=49.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhccc--ccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDE--KVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
-|+|.++|+||.|||+|.+++++.. |..+.|....-+.+....-..+. ..+ ....+..+.+.|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKW----FsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKW----FSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHH----Hhh------hhhHHHHHHHHHHHHHh
Confidence 4899999999999999999999864 34455655555555443111111 111 12234455666777766
Q ss_pred CCe--EEEEEeCC
Q 000782 271 LKR--YLLVLDDL 281 (1287)
Q Consensus 271 ~k~--~LlVlDdv 281 (1287)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 45567888
No 301
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0016 Score=66.84 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=66.6
Q ss_pred cCCCceEEecCCCCCcccccchhchHHHhcCCCcccEEEecCCCCcccCccccCCCccceEecCCCCCcccc--hhhhcc
Q 000782 542 SHKYLRTFLPLDGGFGICRITKKVTHDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSLP--ESIAAL 619 (1287)
Q Consensus 542 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~Ls~n~i~~lp--~~i~~L 619 (1287)
++.+.+.|.+++... . .-.++.+++.|+||.|+-|.|+.+ ..+..+.+|+.|.|+.|.|..+- .-+.+|
T Consensus 17 dl~~vkKLNcwg~~L-----~---DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGL-----D---DISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCc-----c---HHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 344555565555322 1 123567899999999999999988 46889999999999999999874 457899
Q ss_pred cCccEEeecCcccccccC
Q 000782 620 YNLQTLILYSCRYLIQLP 637 (1287)
Q Consensus 620 ~~L~~L~L~~n~~~~~lp 637 (1287)
++|++|-|..|.-.+.-+
T Consensus 88 psLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAG 105 (388)
T ss_pred chhhhHhhccCCcccccc
Confidence 999999999987555544
No 302
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.29 E-value=0.056 Score=51.83 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=39.8
Q ss_pred chHHHhcCCCcccEEEecCCCCcccC-ccccCCCccceEecCCCCCcccc-hhhhcccCccEEeecCcccccccCCCCCC
Q 000782 565 VTHDLLKNFSRLRVLSLSHYEIVELP-DLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLIQLPKHMGD 642 (1287)
Q Consensus 565 ~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~~~~ 642 (1287)
+....|..++.|+.+.+.++ +..++ ..|.++..|+++.+.+ .+..++ ..|..+++|+.+++..+ ....-...|.+
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 44455666666666666553 55544 3455555666666654 444443 34555666666666543 33333444555
Q ss_pred CCCceEEEecCCccccCCc
Q 000782 643 LFNLRFLDIRGCNLQQLPP 661 (1287)
Q Consensus 643 L~~L~~L~l~~n~l~~lp~ 661 (1287)
. +|+.+.+.. .+..++.
T Consensus 103 ~-~l~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 103 C-NLKEINIPS-NITKIEE 119 (129)
T ss_dssp --T--EEE-TT-B-SS---
T ss_pred C-CceEEEECC-CccEECC
Confidence 5 666666554 3344443
No 303
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.26 E-value=0.071 Score=60.09 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=33.9
Q ss_pred cccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 168 IYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 168 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+||+...+.++.+.+..- .....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~----a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----APLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----hCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777766543 123356789999999999999999863
No 304
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.25 E-value=0.05 Score=56.61 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCC-------CCCCCChHH----
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGES-------CGHITQLEP---- 260 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 260 (1287)
-+.++|.|.+|+|||+|+.++.+.. .-+.++++.+++.. ++.++.+++.+.-... .........
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578899999999999999998743 12344778887663 4555555554321111 011111111
Q ss_pred -----HHHHHHHHcCCCeEEEEEeCC
Q 000782 261 -----LQSALKRKLTLKRYLLVLDDL 281 (1287)
Q Consensus 261 -----~~~~l~~~l~~k~~LlVlDdv 281 (1287)
..++++. +++++|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 1122333 799999999998
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.24 E-value=0.06 Score=57.92 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=53.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-----------------
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG----------------- 253 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 253 (1287)
+...++.|+|.+|+|||++|.++... ...+=..++|++..+. ...+.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45689999999999999999998653 1123346788888654 34444443 33321110
Q ss_pred ---CCCChHHHHHHHHHHcCC-CeEEEEEeCC
Q 000782 254 ---HITQLEPLQSALKRKLTL-KRYLLVLDDL 281 (1287)
Q Consensus 254 ---~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 281 (1287)
.....+.+...+.+.+.. +.-++|+|.+
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 112334556666666643 5568999987
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.079 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||.+.++.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999986
No 307
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.24 E-value=0.052 Score=56.31 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=102.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccc----ccccccceeEEEEecCC--------
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDE----KVNDHFELKAWAFVSDE-------- 234 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~-------- 234 (1287)
.+.++++...++...... +...-+.++|++|.||-|.+..+.++. -.+-+-+.+.|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 356677766776665532 356788899999999999887766531 11122344555544332
Q ss_pred -------------CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeE-EEEEeCCCCCChhhHhHhcccCCCCC
Q 000782 235 -------------FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRY-LLVLDDLWGENYNEWEVLQLPFRGGA 300 (1287)
Q Consensus 235 -------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~~~~~l~~~~ 300 (1287)
..-+.+.+++++++....+ .+ .-..+.| ++|+-.+.+-..++...++.....-.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1122333444443332110 00 0012344 45555554433444555555444334
Q ss_pred CCcEEEEEcCch-hhHhHh-cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCc-hhHHHHH
Q 000782 301 HGSKIIVTTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGL-PLAAKAL 375 (1287)
Q Consensus 301 ~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 375 (1287)
..+|+|+...+. .+.... ...-.+++...+++|-...+++.+-...- ..-.+++.+|+++++|. --|+-++
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l----~lp~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL----QLPKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc----cCcHHHHHHHHHHhcccHHHHHHHH
Confidence 566776643321 121112 23346889999999999999887633221 12267899999999885 4455444
No 308
>PRK07667 uridine kinase; Provisional
Probab=95.23 E-value=0.03 Score=57.94 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.+++.+.+... .++..+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666666544 34558999999999999999999987
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.07 Score=59.53 Aligned_cols=91 Identities=16% Similarity=0.059 Sum_probs=56.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
.+.++++++|+.|+||||++..++... ..+-..+.++++... .....-++...+.++.+.....+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999999988632 222234566665433 22345566666666654333455666655555432
Q ss_pred -CCCeEEEEEeCCCC
Q 000782 270 -TLKRYLLVLDDLWG 283 (1287)
Q Consensus 270 -~~k~~LlVlDdv~~ 283 (1287)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13346778887743
No 310
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.036 Score=56.60 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=44.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccC--CCCCCCChHHHHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGE--SCGHITQLEPLQSALKRK 268 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~ 268 (1287)
.++.+|+|.|.+|.||||+|+.++. .++... ++-++-...+. ..-.....+.... .....-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4578999999999999999999997 444332 11122111111 1111111111111 122345666777788888
Q ss_pred cCCCe
Q 000782 269 LTLKR 273 (1287)
Q Consensus 269 l~~k~ 273 (1287)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 311
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.17 E-value=0.039 Score=57.14 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc---
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKL--- 269 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 269 (1287)
-+++.|.|.+|.||||+++.+... ....= ..+.+..... .....+.+..+... ... ...+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g-~~v~~~apT~----~Aa~~L~~~~~~~a---~Ti---~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAG-KRVIGLAPTN----KAAKELREKTGIEA---QTI---HSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT---EEEEESSH----HHHHHHHHHHTS-E---EEH---HHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCC-CeEEEECCcH----HHHHHHHHhhCcch---hhH---HHHHhcCCccc
Confidence 367889999999999999988763 22221 2233333222 22222333332211 011 01111000
Q ss_pred ------CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch
Q 000782 270 ------TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE 312 (1287)
Q Consensus 270 ------~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~ 312 (1287)
..++-+||+|++.-.+...+..+...... .|+|+|+.--..
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999976665666666665544 477888765433
No 312
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.011 Score=36.11 Aligned_cols=19 Identities=37% Similarity=0.810 Sum_probs=10.2
Q ss_pred ceEEEecCCccccCCcCCC
Q 000782 646 LRFLDIRGCNLQQLPPHMG 664 (1287)
Q Consensus 646 L~~L~l~~n~l~~lp~~i~ 664 (1287)
|++||+++|+++.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555444
No 313
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.14 E-value=0.099 Score=58.71 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccc----cccceeEEEEecCCCCHHHHHHHHHHHccC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVN----DHFELKAWAFVSDEFDLVKVTKAILESLGE 250 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 250 (1287)
....++-|+|.+|+|||++|..++-..... +.-..++|++....++.+++ .++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 346788999999999999999887422211 11136899999998888776 456666654
No 314
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.036 Score=64.89 Aligned_cols=72 Identities=28% Similarity=0.274 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC--CHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF--DLVKVTKAILESLGESCGHITQLEPLQSALKRKL 269 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 269 (1287)
...-|.|.|..|+|||+||+++++... +...-.+.+|+++.-. ..+.+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 456788999999999999999998533 5555566677776431 12222222 223344556
Q ss_pred CCCeEEEEEeCC
Q 000782 270 TLKRYLLVLDDL 281 (1287)
Q Consensus 270 ~~k~~LlVlDdv 281 (1287)
...+-+|||||+
T Consensus 492 ~~~PSiIvLDdl 503 (952)
T KOG0735|consen 492 WYAPSIIVLDDL 503 (952)
T ss_pred hhCCcEEEEcch
Confidence 778999999999
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.12 E-value=0.095 Score=56.31 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
..-.++.|.|.+|.|||++|.++... ....-..++|++... +...+.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 45689999999999999999997752 113345688888765 34444444
No 316
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.12 E-value=0.1 Score=63.84 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+.++|....+.++.+.+..- ......|.|+|..|+|||++|+.+++.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~----a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVV----ARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHH----hCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 47999999999988877543 123356789999999999999999874
No 317
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.23 Score=60.19 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=75.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
...+.+-++|++|.|||.||+++++ ..+.+|-.+.+ . .++... -......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 4556899999999999999999998 44445533221 1 111110 01111222333344446
Q ss_pred CCeEEEEEeCCCC-----CCh------hhHhHhcccCCC--CCCCcEEEEEcCchhhHhHh-----cCcCeEEccCCChh
Q 000782 271 LKRYLLVLDDLWG-----ENY------NEWEVLQLPFRG--GAHGSKIIVTTRSENVAQIV-----GTVPVFHLQELSDN 332 (1287)
Q Consensus 271 ~k~~LlVlDdv~~-----~~~------~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~ 332 (1287)
..+..|.+|++.. ... ....++...+.. ...+..||-||-........ .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999832 110 112223333322 22333445555544433321 12357889999999
Q ss_pred hHHHHHHHHHc
Q 000782 333 DCWSLFAQHAF 343 (1287)
Q Consensus 333 ~a~~lf~~~a~ 343 (1287)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 318
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.10 E-value=0.034 Score=57.78 Aligned_cols=110 Identities=14% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHH-HHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLV-KVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
+++.|+|+.|.||||++..+... ........++. +.+..... .-...+..+-. ...+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeecc----cCCCccCHHHHHHHHhcCC
Confidence 57899999999999999987762 32233334433 22221110 00000111100 0112233556677777777
Q ss_pred eEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhH
Q 000782 273 RYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVA 315 (1287)
Q Consensus 273 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~ 315 (1287)
+=.+++|++.+ ........... ..|..++.|+-..++.
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 78999999943 23333322222 2355577776655443
No 319
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.09 E-value=0.072 Score=57.60 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccc----cccceeEEEEecCCCCHHHHHHHHHHHcc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVN----DHFELKAWAFVSDEFDLVKVTKAILESLG 249 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 249 (1287)
...+.=|+|.+|+|||.|+.+++-..... +.=..++|++-...++.+++. +|+++.+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 34688999999999999998886432222 222468999999989887774 5666654
No 320
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.059 Score=61.44 Aligned_cols=90 Identities=20% Similarity=0.161 Sum_probs=55.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccc--cccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVN--DHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRK 268 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 268 (1287)
..+++.++|+.|+||||.+..++...... .+-..+..+++... ......++..++.++.+.......+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45799999999999999998887632211 11224555555432 2233446666666766544444556665555554
Q ss_pred cCCCeEEEEEeCCCC
Q 000782 269 LTLKRYLLVLDDLWG 283 (1287)
Q Consensus 269 l~~k~~LlVlDdv~~ 283 (1287)
.+.-+|++|.+-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998743
No 321
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.05 E-value=0.057 Score=54.96 Aligned_cols=21 Identities=57% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999886
No 322
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.99 E-value=0.12 Score=58.99 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCChHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG-----HITQLEPLQSALK 266 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 266 (1287)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+ +.-+++++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999999863 2223346777766543 2222 223445553321 1233444444443
Q ss_pred HHcCCCeEEEEEeCC
Q 000782 267 RKLTLKRYLLVLDDL 281 (1287)
Q Consensus 267 ~~l~~k~~LlVlDdv 281 (1287)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235668899987
No 323
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.98 E-value=0.062 Score=53.89 Aligned_cols=117 Identities=19% Similarity=0.109 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC--CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE--FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
-.+++|+|..|.|||||.+.++.-. ......+++.-..- .+..+..+ ..++.-. +-..-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 3689999999999999999998632 22334444322111 11111111 1111100 11222233334555566
Q ss_pred CCeEEEEEeCCCC-CChhhHhHhcccCCCC-CCCcEEEEEcCchhhHh
Q 000782 271 LKRYLLVLDDLWG-ENYNEWEVLQLPFRGG-AHGSKIIVTTRSENVAQ 316 (1287)
Q Consensus 271 ~k~~LlVlDdv~~-~~~~~~~~~~~~l~~~-~~gs~ilvTtR~~~v~~ 316 (1287)
.++-++++|+.-. -|......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6778889998732 2333334444333321 23566888888766443
No 324
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.97 E-value=0.059 Score=60.85 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=36.5
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.++|+...+.++.+.+..- .....-|.|+|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~----a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRL----APLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 6899999998888877654 12335688999999999999999986
No 325
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.96 E-value=0.12 Score=57.61 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=40.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccc----cccceeEEEEecCCCCHHHHHHHHHHHccC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVN----DHFELKAWAFVSDEFDLVKVTKAILESLGE 250 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 250 (1287)
....++.|+|.+|+|||+++..++...... +.-..++|++....++..++ .++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 456899999999999999999887521111 11235789998887777763 445555543
No 326
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.95 E-value=0.14 Score=64.62 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=71.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILE 246 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 246 (1287)
.++|+...+.++.+.+..- ......|.|+|..|+|||++|+.+++..... -...+.+.+..-. ...+-..+.
T Consensus 377 ~liG~S~~~~~~~~~~~~~----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~-~~~~~~~lf- 448 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV----AQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP-AGLLESDLF- 448 (686)
T ss_pred ceeecCHHHHHHHHHHHHH----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC-hhHhhhhhc-
Confidence 6899999888887766533 1233578899999999999999998742211 1123344444322 111111221
Q ss_pred HccCCCCCCCC-hHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCC-----------CCCcEEEEEcCch
Q 000782 247 SLGESCGHITQ-LEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGG-----------AHGSKIIVTTRSE 312 (1287)
Q Consensus 247 ~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTtR~~ 312 (1287)
+...+.... .......+. ....-.|+||+|..-.......+...+..+ ..+.|||.||...
T Consensus 449 --g~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 --GHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred --CcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 211111000 011111221 122356999999766555555555444321 1345888888654
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.33 Score=56.29 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLK 272 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 272 (1287)
..=|.++|++|.|||-||++|++ +.+.+| ++|-.. +++.... | .........+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkYV---G------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKYV---G------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcCC
Confidence 45577899999999999999999 455555 444332 1221111 1 11122223333333567
Q ss_pred eEEEEEeCCCCC-----ChhhH------hHhcccCCC--CCCCcEEEEEcCchhhHhHh--c---CcCeEEccCCChhhH
Q 000782 273 RYLLVLDDLWGE-----NYNEW------EVLQLPFRG--GAHGSKIIVTTRSENVAQIV--G---TVPVFHLQELSDNDC 334 (1287)
Q Consensus 273 ~~LlVlDdv~~~-----~~~~~------~~~~~~l~~--~~~gs~ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~a 334 (1287)
+++|.||.+..- +...| .++...+.. ...|.-||-.|..+++.... . -...+-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998321 11111 222222222 23466677777766664432 2 235677888888999
Q ss_pred HHHHHHHHcCCCCC-CCCchhhHHHHHHHhhcCCch
Q 000782 335 WSLFAQHAFSKLNP-EARPSLESIGKEIAKKCKGLP 369 (1287)
Q Consensus 335 ~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~g~P 369 (1287)
.++++...-....+ ..+-++.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99998876432222 222345544432 3455543
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.89 E-value=0.078 Score=57.84 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=49.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCH--HHHHHHHHHHccCCC---CCCCCh-HHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDL--VKVTKAILESLGESC---GHITQL-EPLQSA 264 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~~~~~ 264 (1287)
.+.+++.++|++|+||||++..++.. ....-..+.++.+.. +.. ..-++...+..+.+. ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 35689999999999999999988863 333323455555432 322 233344455554321 111222 222344
Q ss_pred HHHHcCCCeEEEEEeCCC
Q 000782 265 LKRKLTLKRYLLVLDDLW 282 (1287)
Q Consensus 265 l~~~l~~k~~LlVlDdv~ 282 (1287)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444443445578888763
No 329
>PRK10867 signal recognition particle protein; Provisional
Probab=94.88 E-value=0.066 Score=61.99 Aligned_cols=24 Identities=46% Similarity=0.526 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
...++.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998888776
No 330
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.88 E-value=0.12 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 36999999999999999999986
No 331
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.88 E-value=0.16 Score=60.37 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=42.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF 230 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 230 (1287)
+++--.+-++++..||.... .+....+++.+.|++|.||||.++.++++. .|+.+=|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~-~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMF-SGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHh-ccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 45555677889999987541 223346799999999999999999998731 355566653
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.88 E-value=0.16 Score=51.06 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=58.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhccccc-ccc--cc---eeEEEEecCCCCH--HHHHHHHHHHccCCCCCCCChHHHHHH
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKV-NDH--FE---LKAWAFVSDEFDL--VKVTKAILESLGESCGHITQLEPLQSA 264 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 264 (1287)
-.+++|+|..|.|||||++.++.-... .+. ++ .+.+ +.+.+.. ..+...+.-. ....-..-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 468999999999999999999873211 111 11 1222 2333221 1222222210 11122222333344
Q ss_pred HHHHcCCCeEEEEEeCCCC-CChhhHhHhcccCCCCCCCcEEEEEcCchhhH
Q 000782 265 LKRKLTLKRYLLVLDDLWG-ENYNEWEVLQLPFRGGAHGSKIIVTTRSENVA 315 (1287)
Q Consensus 265 l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~ 315 (1287)
+.+.+-.++=++++|+--. -|......+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5555556777888997632 1223333333333322 34577777776554
No 333
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.88 E-value=0.11 Score=51.37 Aligned_cols=118 Identities=17% Similarity=0.048 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeE---EEEecCCCCHHHHHHHHH---HHccCCC-CCCCC-------h
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKA---WAFVSDEFDLVKVTKAIL---ESLGESC-GHITQ-------L 258 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~---~~l~~~~-~~~~~-------~ 258 (1287)
...|-|++..|.||||.|..++- +..++=..+. |+.-........+++.+. .+.+... ....+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 36788888899999999988776 3333322333 333222233333333320 0011110 00111 1
Q ss_pred HHHHHHHHHHcC-CCeEEEEEeCCCC---CChhhHhHhcccCCCCCCCcEEEEEcCch
Q 000782 259 EPLQSALKRKLT-LKRYLLVLDDLWG---ENYNEWEVLQLPFRGGAHGSKIIVTTRSE 312 (1287)
Q Consensus 259 ~~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~ilvTtR~~ 312 (1287)
.......++.+. ++-=+||||.+-. -...+.+.+...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122233444444 4455999999821 11233445555555555677899999976
No 334
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.86 E-value=0.13 Score=62.34 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccc-cccccceeEEEEecCCCCHHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEK-VNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
.++|+...+.++.+.+..- ......|.|+|..|+|||++|+.+++... ... ..+.|.+..-.+ ..+-..+
T Consensus 188 ~iig~s~~~~~~~~~i~~~----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~---p~v~v~c~~~~~-~~~e~~l- 258 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVV----AASDLNVLILGETGVGKELVARAIHAASPRADK---PLVYLNCAALPE-SLAESEL- 258 (509)
T ss_pred ceeecCHHHHHHHHHHHHH----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCC---CeEEEEcccCCh-HHHHHHh-
Confidence 6899999998888887654 22345788999999999999999987422 222 234455554332 1111122
Q ss_pred HHccCCCCCCCC-hHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhHhcccCCCCC-----------CCcEEEEEcCch
Q 000782 246 ESLGESCGHITQ-LEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEVLQLPFRGGA-----------HGSKIIVTTRSE 312 (1287)
Q Consensus 246 ~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvTtR~~ 312 (1287)
++...+.... .......+.. . ..--|+||+|..-.......+...+..+. ...|||.||...
T Consensus 259 --fG~~~g~~~ga~~~~~g~~~~--a-~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 --FGHVKGAFTGAISNRSGKFEL--A-DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred --cCccccccCCCcccCCcchhh--c-CCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1211110000 0000001111 1 22347899997665555555655443321 245888888654
No 335
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.85 E-value=0.1 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
++..+++|.|.+|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999986
No 336
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.83 E-value=0.16 Score=57.05 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhccccc----ccccceeEEEEecCCCCHHHHHHHHHHHccCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKV----NDHFELKAWAFVSDEFDLVKVTKAILESLGES 251 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 251 (1287)
....+.-|+|.+|+|||+|+.+++-.... .+.-..++|++....++.+++.+ ++++++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 35578899999999999999988642222 11224789999999889887644 56666543
No 337
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.78 E-value=0.032 Score=54.32 Aligned_cols=36 Identities=31% Similarity=0.219 Sum_probs=26.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF 230 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 230 (1287)
..+|.|+|.+|.||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 4433333444443
No 338
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.74 E-value=0.0029 Score=77.20 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=7.8
Q ss_pred CCCcceeEEecCCCCc
Q 000782 1150 SSRLKMLEICNCMDLI 1165 (1287)
Q Consensus 1150 ~~~L~~L~l~~~~~~~ 1165 (1287)
+..+..+++.+|....
T Consensus 426 ~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVIT 441 (482)
T ss_pred hhccccCCccCccccc
Confidence 3445555555555443
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.055 Score=51.56 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=32.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCC
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGES 251 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 251 (1287)
+|.|.|.+|.||||+|+.++++...+ | + +.-.+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-------v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-------V----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-------e----eccHHHHHHHHHcCCC
Confidence 68999999999999999999742221 1 1 2236788888887654
No 340
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.67 E-value=0.11 Score=56.07 Aligned_cols=88 Identities=20% Similarity=0.148 Sum_probs=56.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHH-ccCC-CCCCCChHH---HHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILES-LGES-CGHITQLEP---LQSAL 265 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~---~~~~l 265 (1287)
+..+++=|+|+.|.||||+|.+++- ..+..-..++|++....++++++.. +... +..- ..+..+.++ +...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 5678999999999999999999876 3344444889999999999876533 3333 2111 012233333 33333
Q ss_pred HHHcCCCeEEEEEeCC
Q 000782 266 KRKLTLKRYLLVLDDL 281 (1287)
Q Consensus 266 ~~~l~~k~~LlVlDdv 281 (1287)
......+--|+|+|.|
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333334678999988
No 341
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.67 E-value=0.2 Score=55.33 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILES 247 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 247 (1287)
.-.++.|.|.+|+||||++.+++... ...+-..++|++... +..++.+.+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 34688899999999999999987632 122234678887765 345555555544
No 342
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.66 E-value=0.084 Score=54.78 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 343
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.096 Score=53.19 Aligned_cols=120 Identities=18% Similarity=0.108 Sum_probs=59.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccC--CCC---C---------CCC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGE--SCG---H---------ITQ 257 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~---~---------~~~ 257 (1287)
.-.+++|+|..|.|||||++.++.... .....+++.-....... ..+...++. +.. . -..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 346899999999999999999986321 12233332111000000 011111110 000 0 011
Q ss_pred hHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHhHhcccCCCC-CCCcEEEEEcCchhhHhH
Q 000782 258 LEPLQSALKRKLTLKRYLLVLDDLWG-ENYNEWEVLQLPFRGG-AHGSKIIVTTRSENVAQI 317 (1287)
Q Consensus 258 ~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~~~-~~gs~ilvTtR~~~v~~~ 317 (1287)
-+...-.+...+..++=++++|+.-. -|......+...+... ..|..||++|.+......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 11222345556667788999998733 2233333343333321 236678888887765543
No 344
>PRK05439 pantothenate kinase; Provisional
Probab=94.59 E-value=0.16 Score=55.93 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=45.0
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhcccccccc--cceeEEEEecCCCCHHHHHH--HHHHHccCCCCCCCChHHHHHHH
Q 000782 190 DDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH--FELKAWAFVSDEFDLVKVTK--AILESLGESCGHITQLEPLQSAL 265 (1287)
Q Consensus 190 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~l 265 (1287)
.+..-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+. .++..-+ .+..-+.+.+.+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHH
Confidence 35678999999999999999998876 22221 12344444444333322222 1111111 12345666666666
Q ss_pred HHHcCCCe
Q 000782 266 KRKLTLKR 273 (1287)
Q Consensus 266 ~~~l~~k~ 273 (1287)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66666654
No 345
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.58 E-value=0.16 Score=62.96 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=81.1
Q ss_pred ccccchhhHHHHHHHHh---cCcc---cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 167 RIYGREEDADKLIDFLL---KDVE---ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
++.|.+...+++.+.+. .... ....-.+-+.++|++|.|||++|+.++. +....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------h
Confidence 56777766665555432 1100 0011123488999999999999999987 333333 1222211 1
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCC----------hhhHhH----hcccCCC--CCCCcE
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGEN----------YNEWEV----LQLPFRG--GAHGSK 304 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----~~~~l~~--~~~gs~ 304 (1287)
.. ...+ .........+...-...+.+|++|+++.-. ...+.. +...+.. ...+.-
T Consensus 222 ~~----~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE----MFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH----hhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 11 1100 111222333333334578899999984320 011211 1111111 123445
Q ss_pred EEEEcCchhhHhHh--c---CcCeEEccCCChhhHHHHHHHHHc
Q 000782 305 IIVTTRSENVAQIV--G---TVPVFHLQELSDNDCWSLFAQHAF 343 (1287)
Q Consensus 305 ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~a~~lf~~~a~ 343 (1287)
||.||...+..... . -.+.+.+...+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 66677766543322 1 235678888888888888887763
No 346
>PTZ00035 Rad51 protein; Provisional
Probab=94.57 E-value=0.22 Score=56.18 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=40.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhccccc----ccccceeEEEEecCCCCHHHHHHHHHHHccC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKV----NDHFELKAWAFVSDEFDLVKVTKAILESLGE 250 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 250 (1287)
....++.|+|.+|.||||++..++-.... .+.=..++|++....++.+++ .+++++++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 45689999999999999999988753221 111235678888777777664 445665543
No 347
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.57 E-value=0.17 Score=57.08 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccc----cccceeEEEEecCCCCHHHHHHHHHHHcc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVN----DHFELKAWAFVSDEFDLVKVTKAILESLG 249 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 249 (1287)
....++-|+|.+|+|||+++.+++...... ..=..++|++....++.+++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 346899999999999999999997642221 111278999998888877654 4455554
No 348
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.55 E-value=0.1 Score=55.09 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 349
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.53 E-value=0.13 Score=54.74 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
...++.|.|.+|.||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999987766532 1222 3456666433 445555554
No 350
>PRK13948 shikimate kinase; Provisional
Probab=94.47 E-value=0.17 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999987
No 351
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.47 E-value=0.04 Score=60.07 Aligned_cols=33 Identities=39% Similarity=0.524 Sum_probs=25.4
Q ss_pred HHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 176 DKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 176 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
..+++.+... -+-+.++|+.|+|||++++...+
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhc
Confidence 4455555543 35678999999999999999886
No 352
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.44 E-value=0.053 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
...+.++|+|++|.|||.+|++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999983
No 353
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.43 E-value=0.023 Score=52.56 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcccccccccce
Q 000782 196 IPLVGMGGVGKTTLAQVVYKDEKVNDHFEL 225 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 225 (1287)
|-|+|.+|+||||+|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57899999999999999998 56666743
No 354
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.43 E-value=0.36 Score=52.35 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=48.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCC-----C--CCCChHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESC-----G--HITQLEPLQS 263 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~--~~~~~~~~~~ 263 (1287)
.+..++.|+|.+|.|||||+..+.+ ....... ++.+ ..+..+..+ .+.++..+.+. + -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4789999999999999999999987 3333332 2222 222222222 12233333221 1 1123344555
Q ss_pred HHHHHcCCCeEEEEEeCCC
Q 000782 264 ALKRKLTLKRYLLVLDDLW 282 (1287)
Q Consensus 264 ~l~~~l~~k~~LlVlDdv~ 282 (1287)
.+...-....-++|+++|-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5655544445677889984
No 355
>PTZ00301 uridine kinase; Provisional
Probab=94.42 E-value=0.041 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
..+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 356
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.40 E-value=0.096 Score=50.16 Aligned_cols=102 Identities=14% Similarity=0.273 Sum_probs=64.4
Q ss_pred hHHHhcCCCcccEEEecCCCCcccC-ccccCCCccceEecCCCCCcccc-hhhhcccCccEEeecCcccccccCCCCCCC
Q 000782 566 THDLLKNFSRLRVLSLSHYEIVELP-DLIGDLKHLRYLDLSNTSIKSLP-ESIAALYNLQTLILYSCRYLIQLPKHMGDL 643 (1287)
Q Consensus 566 ~~~~~~~~~~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L 643 (1287)
...+|..+++|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ....-...|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-cccccccccccc
Confidence 445788899999999985 577775 57889989999999885 88776 57888989999999763 444445678889
Q ss_pred CCceEEEecCCccccCCcC-CCCCCCCCcc
Q 000782 644 FNLRFLDIRGCNLQQLPPH-MGGLKNLRTL 672 (1287)
Q Consensus 644 ~~L~~L~l~~n~l~~lp~~-i~~L~~L~~L 672 (1287)
++|+.+++..+ +..++.. +.+. +|+.+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 99999999765 6666554 5554 66655
No 357
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.35 E-value=0.029 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+++|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 358
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.35 E-value=0.18 Score=54.63 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG- 253 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 253 (1287)
.+.+...+... ++..-++|+|..|.||||+.+.++.. +. .....+++.- +.....+...++......-..
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhcccccc
Confidence 44455555433 34578999999999999999999973 22 1222233211 000000111233222211100
Q ss_pred ---C---C-CChHHHHHHHHHHcC-CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCchhhHh
Q 000782 254 ---H---I-TQLEPLQSALKRKLT-LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQ 316 (1287)
Q Consensus 254 ---~---~-~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~v~~ 316 (1287)
. . +.... ...+...+. ..+=++|+|.+-. ...+..+...+. .|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 0 01111 112222222 4788999999843 344555544442 4677999998766543
No 359
>PRK06547 hypothetical protein; Provisional
Probab=94.35 E-value=0.052 Score=54.61 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
....+|+|.|.+|.||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999863
No 360
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.16 Score=56.26 Aligned_cols=82 Identities=26% Similarity=0.260 Sum_probs=53.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCChHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG-----HITQLEPLQSALK 266 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 266 (1287)
.-.++.|-|-+|||||||..+++. +...+- .+.+|+-.+. ... .+--+++++.... ...+.+...+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 347899999999999999999987 444333 6677665543 222 2334566664332 2345555555554
Q ss_pred HHcCCCeEEEEEeCCC
Q 000782 267 RKLTLKRYLLVLDDLW 282 (1287)
Q Consensus 267 ~~l~~k~~LlVlDdv~ 282 (1287)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 4 688999999983
No 361
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.34 E-value=0.52 Score=50.30 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=66.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCe
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKR 273 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 273 (1287)
+.+.|+|+.|+|||+-++.+++. ....+.+..+..+....++..+........ ..........+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccCc
Confidence 48899999999999999999973 122334566666777666666665544332 2333444555666668888
Q ss_pred EEEEEeCCCCCChhhHhHhcccCCC
Q 000782 274 YLLVLDDLWGENYNEWEVLQLPFRG 298 (1287)
Q Consensus 274 ~LlVlDdv~~~~~~~~~~~~~~l~~ 298 (1287)
-+|+.|+...-.....+.+......
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHh
Confidence 8999999876666677777654433
No 362
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.31 E-value=0.029 Score=53.80 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 000782 196 IPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~ 216 (1287)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 363
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.30 E-value=0.23 Score=53.29 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=30.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE 234 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 234 (1287)
..-.++.|.|.+|.||||+|.+++... . ..-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 345899999999999999999876531 1 22346788877443
No 364
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.30 E-value=0.059 Score=59.24 Aligned_cols=51 Identities=25% Similarity=0.575 Sum_probs=43.2
Q ss_pred CCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.+.|+|.++.++++++.+.......+.+-+|+.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 448999999999999999765333356679999999999999999999876
No 365
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.29 E-value=0.18 Score=58.20 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=48.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCC-----CC-CCCChHH-----
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGES-----CG-HITQLEP----- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~-~~~~~~~----- 260 (1287)
.-..++|+|..|.|||||++.+.... .....++|+.-.+..++..+....+...... .. +......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34689999999999999999888632 2222444443333444544444443332111 01 1111111
Q ss_pred HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 ~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111233343 589999999998
No 366
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.26 E-value=0.14 Score=58.57 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC-HHHHHHHHHHHccCCC-----CCCCC--hHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD-LVKVTKAILESLGESC-----GHITQ--LEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-----~~~~~--~~~--- 260 (1287)
.-..++|+|..|+|||||++.+++.. ..+.++++-+++... +.++.+.++..-+... ...++ ...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998631 124566666766543 4445555443311110 01111 111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 111234444 689999999999
No 367
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.24 E-value=0.14 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 368
>PRK04328 hypothetical protein; Provisional
Probab=94.23 E-value=0.13 Score=55.61 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE 234 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 234 (1287)
..-.++.|.|.+|.|||++|.++... ....-..++|++..+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 34579999999999999999998763 2223456788887664
No 369
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.41 Score=48.91 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCC-ChhhHhHhcc---cCCCCCCCcEEEEEcCchhhHhHhcCcCeE
Q 000782 261 LQSALKRKLTLKRYLLVLDDLWGE-NYNEWEVLQL---PFRGGAHGSKIIVTTRSENVAQIVGTVPVF 324 (1287)
Q Consensus 261 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~---~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~ 324 (1287)
-...+.+.+--++-+.|||...+- |.+..+.+.. .+.. +|+-++|.|-.+.++....+...+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~--~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE--EGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHhhcCCCEEE
Confidence 344555555557889999987442 2333333332 2333 366677777888888887655443
No 370
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.22 E-value=0.28 Score=52.90 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+..|+|+||+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999875
No 371
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.19 E-value=0.19 Score=52.99 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=66.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccc-----cc---c---cc---ceeEEEEecC----CC--CH---------------
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEK-----VN---D---HF---ELKAWAFVSD----EF--DL--------------- 237 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~-----~~---~---~f---~~~~wv~~~~----~~--~~--------------- 237 (1287)
-.+++|+|+.|.|||||.+.+..-.+ +. . .+ ..+.||.=.. .+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37999999999999999999976110 10 0 01 1344432110 00 01
Q ss_pred -------HHHHHHHHHHccCCCCC-----C-CChHHHHHHHHHHcCCCeEEEEEeCCCC-CCh---hhHhHhcccCCCCC
Q 000782 238 -------VKVTKAILESLGESCGH-----I-TQLEPLQSALKRKLTLKRYLLVLDDLWG-ENY---NEWEVLQLPFRGGA 300 (1287)
Q Consensus 238 -------~~~~~~i~~~l~~~~~~-----~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~---~~~~~~~~~l~~~~ 300 (1287)
.+...+.+++++...-. . +.-+...-.|.+.|..++=|+|||.--. .|. ...-.+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 24445556666543211 1 1222233346677888899999996422 122 2222333333333
Q ss_pred CCcEEEEEcCchhhHhH
Q 000782 301 HGSKIIVTTRSENVAQI 317 (1287)
Q Consensus 301 ~gs~ilvTtR~~~v~~~ 317 (1287)
|..||++|-+-.....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 7788888887655443
No 372
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.12 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999985
No 373
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.18 E-value=0.19 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998874
No 374
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.34 Score=60.30 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=70.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCC--CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATD--DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
.++|.++.+..|.+.+........ .....+.+.|+.|+|||-||++++. .+-+..+..+-+..+.. .. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-h
Confidence 578888888888888865411111 2567888999999999999999886 33222333344444432 12 2
Q ss_pred HHHccCCCCCCCChHHHHHHHHHHcCCCeE-EEEEeCCCCCChhhHhHhcccCC
Q 000782 245 LESLGESCGHITQLEPLQSALKRKLTLKRY-LLVLDDLWGENYNEWEVLQLPFR 297 (1287)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~~~~~l~ 297 (1287)
.+-.+.+.+- -..+....|.+.++.++| +|+||||...++.....+...+.
T Consensus 634 skligsp~gy--vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 634 SKLIGSPPGY--VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhccCCCccc--ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 2323332211 111223356777777776 66689997666555554444443
No 375
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.17 E-value=0.26 Score=49.78 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=67.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEe-------------------cCCC-----------------
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFV-------------------SDEF----------------- 235 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------------------~~~~----------------- 235 (1287)
.-.|++|+|++|.|||||.+.+..= ...=...+|+.- -+.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3469999999999999999988652 222223344322 1111
Q ss_pred --------CHHHHHHHHHHHccCCCC------CCCChHHHHHHHHHHcCCCeEEEEEeCCCCC-ChhhHhHhcccCCC-C
Q 000782 236 --------DLVKVTKAILESLGESCG------HITQLEPLQSALKRKLTLKRYLLVLDDLWGE-NYNEWEVLQLPFRG-G 299 (1287)
Q Consensus 236 --------~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~-~ 299 (1287)
..++...+++++++.... +-+.-++..-.|.+.|.=++=++.+|..-+. |++...++...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 123333444555544321 1122333444577777778889999988432 23333333322221 2
Q ss_pred CCCcEEEEEcCchhhHhHhc
Q 000782 300 AHGSKIIVTTRSENVAQIVG 319 (1287)
Q Consensus 300 ~~gs~ilvTtR~~~v~~~~~ 319 (1287)
..|-..||.|-....|..+.
T Consensus 184 ~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HcCCeEEEEechhHHHHHhh
Confidence 34555666666666666543
No 376
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.13 E-value=0.25 Score=60.80 Aligned_cols=88 Identities=23% Similarity=0.191 Sum_probs=53.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
.++++++|+.|+||||.+.+++...........+..+..... ....+-++...+.++.+.....+.+++...+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 479999999999999999888863211111124444443321 224455666667776655444456666655554 444
Q ss_pred CeEEEEEeCCC
Q 000782 272 KRYLLVLDDLW 282 (1287)
Q Consensus 272 k~~LlVlDdv~ 282 (1287)
+. +|++|=.-
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 77778664
No 377
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.11 E-value=0.33 Score=50.40 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHhHhcccCCC--CCCCcEEEEEcCchhhHhHhc
Q 000782 259 EPLQSALKRKLTLKRYLLVLDDLWG-ENYNEWEVLQLPFRG--GAHGSKIIVTTRSENVAQIVG 319 (1287)
Q Consensus 259 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 319 (1287)
++..-.+.+.+-..+-+|+.|+--. -|...-+.+...+.. ...|..||+.|-++.++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3444567777788888999996411 122222333333332 234778999999999988654
No 378
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.11 E-value=0.19 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 379
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.10 E-value=0.32 Score=53.72 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=40.9
Q ss_pred HHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHH
Q 000782 178 LIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAIL 245 (1287)
Q Consensus 178 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 245 (1287)
+++.+..- .+-+.++|.|..|+|||+|++++++.. +-+.++++-+++.. .+.+++.++-
T Consensus 147 vID~l~Pi-----~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPV-----VKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccc-----cCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 45555433 234688999999999999999999742 23567888887764 3555655543
No 380
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.10 E-value=0.18 Score=53.95 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=54.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhccccc--ccccceeEEEEecCCC-CHHHHHHHHHHHccCCC-------CCCCChHH-
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKV--NDHFELKAWAFVSDEF-DLVKVTKAILESLGESC-------GHITQLEP- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~- 260 (1287)
+-+.++|.|-.|+|||+|+.++.++... +++-+.++++-+++.. ++.++..++.+.=.... ........
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999998874321 1234678888888765 35556665554311110 01111111
Q ss_pred ----HHHHHHHHc--C-CCeEEEEEeCC
Q 000782 261 ----LQSALKRKL--T-LKRYLLVLDDL 281 (1287)
Q Consensus 261 ----~~~~l~~~l--~-~k~~LlVlDdv 281 (1287)
..-.+.+++ + ++++|+|+||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 112244554 3 78999999998
No 381
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.09 E-value=0.043 Score=57.95 Aligned_cols=21 Identities=48% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.|.|+|++|+||||+|+.++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999986
No 382
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.09 E-value=0.068 Score=50.55 Aligned_cols=40 Identities=35% Similarity=0.274 Sum_probs=28.8
Q ss_pred hhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 173 EDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 173 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
++.+++.+.+... -....++.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~----l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKP----LDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHh----CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455555555432 123468999999999999999999974
No 383
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.07 E-value=0.068 Score=56.10 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998873
No 384
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.06 E-value=0.035 Score=55.78 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
..+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 385
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.06 E-value=0.27 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-..++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 36899999999999999999854
No 386
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=0.2 Score=57.58 Aligned_cols=88 Identities=23% Similarity=0.212 Sum_probs=46.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC-CCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD-EFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLT 270 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 270 (1287)
+..+++++|..|+||||++..++.........+.+.++.... .....+-+....+.++.+.....+..++...+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 347999999999999999988775211111123344443322 1223334455555655544333444444333333 44
Q ss_pred CCeEEEEEeCC
Q 000782 271 LKRYLLVLDDL 281 (1287)
Q Consensus 271 ~k~~LlVlDdv 281 (1287)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 34556655
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=94.04 E-value=0.19 Score=53.11 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=33.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAI 244 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 244 (1287)
+..++.|.|.+|+|||++|.+++... ..+-..+++++.... ...+...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHHH
Confidence 44688999999999999999987632 222345677766654 34444443
No 388
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.04 E-value=0.12 Score=58.45 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=48.9
Q ss_pred CCccccchhhHHHHHHHHhcCc------c--cCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc---ceeEEEEe-c
Q 000782 165 DDRIYGREEDADKLIDFLLKDV------E--ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF---ELKAWAFV-S 232 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~------~--~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 232 (1287)
+..++|.++.++.+...+.... + ......+-|.++|++|+|||++|+.++. .....| +...|... .
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCc
Confidence 4468899888888876665310 0 0111246788999999999999999987 334333 22222221 1
Q ss_pred CCCCHHHHHHHHHHH
Q 000782 233 DEFDLVKVTKAILES 247 (1287)
Q Consensus 233 ~~~~~~~~~~~i~~~ 247 (1287)
...+.+.+++.+.+.
T Consensus 89 vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 89 VGRDVESMVRDLTDA 103 (441)
T ss_pred ccCCHHHHHHHHHHH
Confidence 223566666666544
No 389
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.04 E-value=0.085 Score=55.21 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000782 174 DADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD 236 (1287)
Q Consensus 174 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 236 (1287)
+..++++.+... .++..+|+|.|+||+|||||..++....+.+++=-.++=|.-|..++
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 345566666543 34678999999999999999999887433333222333343344444
No 390
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.1 Score=59.21 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=36.2
Q ss_pred ccccch---hhHHHHHHHHhcCccc---CCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 167 RIYGRE---EDADKLIDFLLKDVEA---TDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 167 ~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
++-|-| .|+++|+++|.++..- ++.=++=|.++|++|.|||-||++|+-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 445654 5678888888654211 2233567889999999999999999974
No 391
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.02 E-value=0.041 Score=63.97 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred HHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccccee-EEEEecCCCC-HHHHHHHHHHHccCCCCC
Q 000782 177 KLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELK-AWAFVSDEFD-LVKVTKAILESLGESCGH 254 (1287)
Q Consensus 177 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~i~~~l~~~~~~ 254 (1287)
++++.+..- +.-+...|+|.+|+|||||++.+++... ..+-++. +.+-|.+... +.++.+.+-..+-....+
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 455555443 3446788999999999999999998321 1122222 3455555543 333322221111111111
Q ss_pred CCCh-----HHHHHHHHHHc--CCCeEEEEEeCC
Q 000782 255 ITQL-----EPLQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 255 ~~~~-----~~~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
.... ..+.-.+-+++ .++.+||++|++
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111 11222234444 689999999998
No 392
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.99 E-value=0.044 Score=57.79 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.+..+|+|+|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 393
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.98 E-value=0.085 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
...+++|+|.+|.||||+|++++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 394
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.96 E-value=0.046 Score=57.42 Aligned_cols=25 Identities=36% Similarity=0.516 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 395
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.94 E-value=0.27 Score=56.88 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=52.7
Q ss_pred CeEEEEEEcCCCChHHHHH-HHHhccccc-----ccccceeEEEEecCCCCHHHHHHHHHHHccCCC------CCCCC--
Q 000782 192 GMCVIPLVGMGGVGKTTLA-QVVYKDEKV-----NDHFELKAWAFVSDEFDLVKVTKAILESLGESC------GHITQ-- 257 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~-- 257 (1287)
+-+.++|.|..|+|||+|| ..+.+...+ .++-+.++++-+++..+...-+.+.+++-+.-. ...++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 555664322 124456788888887654333444444433111 01111
Q ss_pred hHH-----HHHHHHHHc--CCCeEEEEEeCC
Q 000782 258 LEP-----LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 258 ~~~-----~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..+ ..-.+-+++ +++.+|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 111233333 589999999999
No 396
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.13 Score=50.98 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 397
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.93 E-value=0.16 Score=51.19 Aligned_cols=120 Identities=18% Similarity=0.070 Sum_probs=63.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC---CCHHHHHHHH--HH--HccCCC-CCCCChH----
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE---FDLVKVTKAI--LE--SLGESC-GHITQLE---- 259 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i--~~--~l~~~~-~~~~~~~---- 259 (1287)
....|-|+|..|-||||.|..++- +..++=..+..+..-+. ......++.+ +. +.+... ....+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 347899999999999999988776 33333223333333322 2333333321 00 011110 0111111
Q ss_pred ---HHHHHHHHHcC-CCeEEEEEeCCCC---CChhhHhHhcccCCCCCCCcEEEEEcCchh
Q 000782 260 ---PLQSALKRKLT-LKRYLLVLDDLWG---ENYNEWEVLQLPFRGGAHGSKIIVTTRSEN 313 (1287)
Q Consensus 260 ---~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~ilvTtR~~~ 313 (1287)
......++.+. ++-=+||||.+-. -.....+++...+.....+..||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233344443 4556999999821 122344555555655556779999999763
No 398
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.85 E-value=0.21 Score=57.90 Aligned_cols=89 Identities=20% Similarity=0.112 Sum_probs=53.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
+-+.++|.|.+|+|||||+.+++...... +=+.++++-+++.. .+.++++++...=.... .+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999887532211 11356777776654 35566666654311110 11111111
Q ss_pred --HHHHHHHHc---CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL---TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l---~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 122345555 679999999999
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.84 E-value=0.3 Score=57.18 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=46.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
.+|++++|+.|+||||++.+++.....+..-..+..+..... ....+-++...+.++.+.....+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 479999999999999999998863222211123444544321 2233344444555554432222222222222 23444
Q ss_pred CeEEEEEeCC
Q 000782 272 KRYLLVLDDL 281 (1287)
Q Consensus 272 k~~LlVlDdv 281 (1287)
+ ..+++|-.
T Consensus 335 ~-d~VLIDTa 343 (484)
T PRK06995 335 K-HIVLIDTI 343 (484)
T ss_pred C-CeEEeCCC
Confidence 4 36677766
No 400
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.80 E-value=0.55 Score=45.36 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHccCCCC------CCCChHHHHHHHHHHcCCCeEEEEEeCCCC-CChhhHhHhcccCC--CCCCCcEE
Q 000782 235 FDLVKVTKAILESLGESCG------HITQLEPLQSALKRKLTLKRYLLVLDDLWG-ENYNEWEVLQLPFR--GGAHGSKI 305 (1287)
Q Consensus 235 ~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~--~~~~gs~i 305 (1287)
.+.....+..+++++.... +-..-++..-.|.+.+..++-+++-|.--. -|...-+.+...+. ....|+..
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~Tl 200 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceE
Confidence 3456667778888775431 223445555667888888888888886411 11122223332221 23468888
Q ss_pred EEEcCchhhHhHhcC
Q 000782 306 IVTTRSENVAQIVGT 320 (1287)
Q Consensus 306 lvTtR~~~v~~~~~~ 320 (1287)
++.|-++.++..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 888889999888753
No 401
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.79 E-value=0.27 Score=53.23 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcC-
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESCGHITQLEPLQSALKRKLT- 270 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 270 (1287)
..+++++|.+|+||||++..+... ...+=..+.+++..... ....-++...+.++.+.....+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 469999999999999999988763 22211245555544321 22223334444444332223344555444443322
Q ss_pred CCeEEEEEeCCCC
Q 000782 271 LKRYLLVLDDLWG 283 (1287)
Q Consensus 271 ~k~~LlVlDdv~~ 283 (1287)
.+.=++++|..-.
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 2456788898744
No 402
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.79 E-value=0.027 Score=56.56 Aligned_cols=42 Identities=24% Similarity=0.157 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccc-cccceeEEEEecCCCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVN-DHFELKAWAFVSDEFD 236 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~ 236 (1287)
..++.+.|+.|+|||.+|+.+++ ... +.....+-+.++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46889999999999999999987 333 3344555556655444
No 403
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.78 E-value=0.28 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.-.+++|+|..|.|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998763
No 404
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.76 E-value=0.049 Score=53.38 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 405
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.75 E-value=0.094 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|+|.|.+|.||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 406
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.73 E-value=0.067 Score=56.68 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHH
Q 000782 176 DKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVT 241 (1287)
Q Consensus 176 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 241 (1287)
.+++..+... .++..+|+|.|.||+|||||.-.+......+++=-.++=|.-|..++--.++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4455555443 3677899999999999999999888754444443445555555555543333
No 407
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.69 E-value=0.14 Score=56.38 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCChHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG-----HITQLEPLQSAL 265 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 265 (1287)
+.-+++-|+|..|+||||||.++.. ..+..-..++|+.....++.. .+++++.+.. +....++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 3457999999999999999999886 344445578899988876653 3445554332 223445555555
Q ss_pred HHHcC-CCeEEEEEeCC
Q 000782 266 KRKLT-LKRYLLVLDDL 281 (1287)
Q Consensus 266 ~~~l~-~k~~LlVlDdv 281 (1287)
...++ +..-++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 55554 34458899988
No 408
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.68 E-value=0.082 Score=53.39 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 409
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.65 E-value=0.26 Score=58.09 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=48.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCChHHHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG-----HITQLEPLQSALK 266 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 266 (1287)
.-.++.|.|.+|+|||||+.+++.. ...+-..++|++..+. ...+. .-+++++.... ...+.+.+.+.++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4579999999999999999999873 2222235677776543 23332 22455543211 1233444444333
Q ss_pred HHcCCCeEEEEEeCC
Q 000782 267 RKLTLKRYLLVLDDL 281 (1287)
Q Consensus 267 ~~l~~k~~LlVlDdv 281 (1287)
+ .+.-+||+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34557888876
No 410
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.65 E-value=0.33 Score=57.22 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG- 253 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 253 (1287)
+.++-+.|... -..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+. .-+++++....
T Consensus 80 i~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~-~ra~rlg~~~~~ 150 (454)
T TIGR00416 80 FGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIK-MRAIRLGLPEPN 150 (454)
T ss_pred cHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHH-HHHHHcCCChHH
Confidence 34454555332 234579999999999999999998763 2222235778776543 32222 22334432211
Q ss_pred ----CCCChHHHHHHHHHHcCCCeEEEEEeCC
Q 000782 254 ----HITQLEPLQSALKRKLTLKRYLLVLDDL 281 (1287)
Q Consensus 254 ----~~~~~~~~~~~l~~~l~~k~~LlVlDdv 281 (1287)
...+.+.+...+.+ .+.-++|+|.+
T Consensus 151 l~~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 151 LYVLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred eEEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 12334443333332 24556788876
No 411
>PRK06762 hypothetical protein; Provisional
Probab=93.59 E-value=0.053 Score=54.74 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.+|.|+|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 412
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.58 E-value=1.9 Score=47.20 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCch-hhHhHh-cCcCeEEccCCChhhHHHHHH
Q 000782 271 LKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSE-NVAQIV-GTVPVFHLQELSDNDCWSLFA 339 (1287)
Q Consensus 271 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~lf~ 339 (1287)
+++=++|+||+.......+..+...+.....++.+|++|.+. .+...+ .....+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 556689999998777778888888887766667777766554 444433 3456777866 6666666654
No 413
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.57 E-value=1.6 Score=47.64 Aligned_cols=131 Identities=10% Similarity=-0.002 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccc-----------cccceeEEEEecCCCCHHHHHHH
Q 000782 175 ADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVN-----------DHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
-+++...+..+ .-.+...++|+.|+||+++|..++...--. +..+...|+.-....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 34556666443 345677899999999999999887631100 001111111100000
Q ss_pred HHHHccCCCCCCCChHHHHHHHHHHc-----CCCeEEEEEeCCCCCChhhHhHhcccCCCCCCCcEEEEEcCc-hhhHhH
Q 000782 244 ILESLGESCGHITQLEPLQSALKRKL-----TLKRYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRS-ENVAQI 317 (1287)
Q Consensus 244 i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtR~-~~v~~~ 317 (1287)
..-..++. +.+.+.+ .+++=++|+|++.......+..+...+.....++.+|++|.. ..+...
T Consensus 73 ----------~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 73 ----------RLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ----------CcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 00112222 2233332 345568889999777777888888877766667766666655 444433
Q ss_pred -hcCcCeEEccCC
Q 000782 318 -VGTVPVFHLQEL 329 (1287)
Q Consensus 318 -~~~~~~~~l~~L 329 (1287)
...+..+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 234556777665
No 414
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.59 Score=51.32 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
=+-|..+|++|.|||-||++|+.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHH
Confidence 46778999999999999999997
No 415
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.51 E-value=0.041 Score=50.55 Aligned_cols=21 Identities=48% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 000782 196 IPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~ 216 (1287)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998873
No 416
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.50 E-value=0.45 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999875
No 417
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.46 E-value=0.12 Score=50.85 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
++.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 418
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.45 E-value=0.15 Score=56.86 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 000782 196 IPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 196 v~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+++.|++|.||||+|+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999863
No 419
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.45 E-value=0.27 Score=56.62 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=48.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC-CCCHHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD-EFDLVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
+-..++|+|..|+|||||++.++.... ....++ +.+++ ...+.++.++.+..-+... .+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999886322 122233 33333 3345555554443321111 11111111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112244444 589999999998
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.42 E-value=0.22 Score=57.34 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 421
>PRK03839 putative kinase; Provisional
Probab=93.34 E-value=0.056 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999973
No 422
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.32 E-value=0.19 Score=54.59 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD 233 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 233 (1287)
..-.++.|.|.+|+|||++|.+++.. ....-..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 35579999999999999999998763 212234678888764
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.29 E-value=0.32 Score=58.38 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=41.4
Q ss_pred HHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHcc
Q 000782 176 DKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLG 249 (1287)
Q Consensus 176 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 249 (1287)
+++-+.|... -..-.++.|.|.+|+|||||+.+++.. ...+-..+++++..+. ...+.+.+ +.++
T Consensus 250 ~~lD~~lgGG----~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGG----FFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCC----ccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 4455555332 245689999999999999999999873 3233345677766553 44444442 4444
No 424
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.26 E-value=0.13 Score=58.43 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=45.3
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHH
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVT 241 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 241 (1287)
.++|+++.+..+...+... +.+.+.|.+|+|||+||+.++. .....| .++.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~~~~---~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALGLPF---VRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecCCCCCHHHhc
Confidence 5788888888887777654 5678999999999999999997 333333 455666665555543
No 425
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.26 E-value=0.14 Score=62.52 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=55.9
Q ss_pred CccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHH
Q 000782 166 DRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAIL 245 (1287)
Q Consensus 166 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 245 (1287)
++++|.++.++.+...+... +.+.++|.+|+||||+|+.+++. -...+++..+|..- ...+....++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 37899999888888777543 36889999999999999999873 23344677888655 3446777778887
Q ss_pred HHccC
Q 000782 246 ESLGE 250 (1287)
Q Consensus 246 ~~l~~ 250 (1287)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76654
No 426
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.25 E-value=0.25 Score=59.73 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.++|....+.++++.+..- ...-..|.|+|..|+||+.+|+.+++
T Consensus 205 ~~ig~s~~~~~~~~~~~~~----A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKL----AMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHH----hCCCCCEEEECCCCccHHHHHHHHHH
Confidence 6899988888887766432 11224578999999999999999875
No 427
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.25 E-value=0.052 Score=30.63 Aligned_cols=14 Identities=64% Similarity=0.831 Sum_probs=4.7
Q ss_pred cceEecCCCCCccc
Q 000782 599 LRYLDLSNTSIKSL 612 (1287)
Q Consensus 599 Lr~L~Ls~n~i~~l 612 (1287)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 428
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.25 E-value=0.21 Score=58.10 Aligned_cols=89 Identities=19% Similarity=0.094 Sum_probs=54.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
+-+.++|.|.+|+|||||+.++++... +.+-+.++++-+++.. .+.++..++...-.... .+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446889999999999999998887422 2245677777777654 35556555554211110 01111111
Q ss_pred --HHHHHHHHc---CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL---TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l---~~k~~LlVlDdv 281 (1287)
..-.+.+++ .++++|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 122344555 379999999999
No 429
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.22 E-value=0.16 Score=54.31 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHH-HHHhccccccccccee-EEEEecCCC-CHHHHHHHHHHHccCCC-------CCCCChHH-
Q 000782 192 GMCVIPLVGMGGVGKTTLA-QVVYKDEKVNDHFELK-AWAFVSDEF-DLVKVTKAILESLGESC-------GHITQLEP- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~- 260 (1287)
+-+.++|.|.+|+|||+|| ..+.+. . +-+.+ +++-+++.. .+.++.+++.+.=.... .+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4467899999999999996 556542 1 22333 666666654 35556665553211110 11111111
Q ss_pred ----HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 ----LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 ----~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++.+|||+||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 011223333 589999999999
No 430
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.21 E-value=0.3 Score=50.67 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=27.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhccccccccc--------ceeEEEEecCC
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHF--------ELKAWAFVSDE 234 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 234 (1287)
.++.|+|.+|+||||++.+++.+......| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999999887643222222 35777776665
No 431
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.21 E-value=0.45 Score=52.88 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
.-..++|+|..|.|||||.+.+..... -+..+..-++.. .++.++.......-+... .+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999999987322 123344444433 345555554444321110 11111111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ ++|.+|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 111233333 589999999998
No 432
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.21 E-value=0.11 Score=53.98 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=59.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHH---HHHHHHH
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPL---QSALKRK 268 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~~ 268 (1287)
..+++.|.|+.|.||||+.+.++.... ..+ ...++.+.. .. -.+...|...++............ ...+...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~-la~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAI-MAQ--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HHH--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 347899999999999999998864211 111 111111111 11 122233333333221111111111 1111221
Q ss_pred --cCCCeEEEEEeCCCCC-ChhhH----hHhcccCCCCCCCcEEEEEcCchhhHhHhc
Q 000782 269 --LTLKRYLLVLDDLWGE-NYNEW----EVLQLPFRGGAHGSKIIVTTRSENVAQIVG 319 (1287)
Q Consensus 269 --l~~k~~LlVlDdv~~~-~~~~~----~~~~~~l~~~~~gs~ilvTtR~~~v~~~~~ 319 (1287)
+..++-|+++|..-.. +..+. ..+...+.. .|+.+|+||-+.+++..+.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2356789999997332 12221 122223332 3778999999988877654
No 433
>PRK00625 shikimate kinase; Provisional
Probab=93.15 E-value=0.062 Score=54.08 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.|.++|++|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 434
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.10 E-value=0.2 Score=56.72 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCccccchhhHHHHHHHHhcC--------cccCCCCeEEEEEEcCCCChHHHHHHHHhccccccccc---ceeEEEEe-c
Q 000782 165 DDRIYGREEDADKLIDFLLKD--------VEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHF---ELKAWAFV-S 232 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 232 (1287)
+..++|.++.++.+..++... ........+.+.++|++|+|||++|+.++. .....| +...|... .
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCc
Confidence 446899999999888777431 000011236789999999999999999987 333333 22222221 1
Q ss_pred CCCCHHHHHHHHHHH
Q 000782 233 DEFDLVKVTKAILES 247 (1287)
Q Consensus 233 ~~~~~~~~~~~i~~~ 247 (1287)
...+.+.+.+.+.+.
T Consensus 92 vG~d~e~~ir~L~~~ 106 (443)
T PRK05201 92 VGRDVESIIRDLVEI 106 (443)
T ss_pred ccCCHHHHHHHHHHH
Confidence 223555666666544
No 435
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.10 E-value=0.24 Score=57.22 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=54.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC-HHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD-LVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
+-+.++|.|.+|+|||+|+.++.+... +.+-+.++|+-+++... +.++.+++...=.... .+......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 446889999999999999999887422 22346788888877653 4555555554211110 11111111
Q ss_pred --HHHHHHHHc---CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL---TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l---~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 112344554 468999999999
No 436
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.09 E-value=0.78 Score=48.19 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.-.+++|+|..|.|||||++.++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 437
>PRK04040 adenylate kinase; Provisional
Probab=93.06 E-value=0.071 Score=54.63 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 438
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.05 E-value=0.73 Score=48.67 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.-.+++|+|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 439
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.99 E-value=0.57 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.-.+++|.|..|.|||||.+.++.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999986
No 440
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.98 E-value=0.6 Score=52.19 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.+..+++++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999873
No 441
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.98 E-value=0.072 Score=30.08 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=8.0
Q ss_pred CcceEEecCccCCccc
Q 000782 1117 CLECLQISGCSLNSFP 1132 (1287)
Q Consensus 1117 ~L~~L~Ls~n~i~~~~ 1132 (1287)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4667777777666543
No 442
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.94 E-value=0.57 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.-.+++|+|+.|.|||||.+.+..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999876
No 443
>PRK06217 hypothetical protein; Validated
Probab=92.94 E-value=0.15 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 444
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.93 E-value=0.16 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.343 Sum_probs=18.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
..|.|.|.||.||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999873
No 445
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.93 E-value=0.092 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988775
No 446
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.92 E-value=0.62 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999886
No 447
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.89 E-value=0.08 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+..+|+|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 448
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.22 Score=49.62 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=59.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC--HHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD--LVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
.+++|+|..|.|||||++.+.... ......+++....... .... ...++.-. +-..-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 699999999999999999998732 2233444433221111 1111 11111100 011122333335555556
Q ss_pred CeEEEEEeCCCCC-ChhhHhHhcccCCC-CCCCcEEEEEcCchhhHhH
Q 000782 272 KRYLLVLDDLWGE-NYNEWEVLQLPFRG-GAHGSKIIVTTRSENVAQI 317 (1287)
Q Consensus 272 k~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtR~~~v~~~ 317 (1287)
.+-++++|+.-.. |......+...+.. ...+..++++|-+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999987431 22333333333322 1124567888877666554
No 449
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.79 E-value=0.5 Score=51.27 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.-.+++|+|..|.|||||++.++.-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 450
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.76 E-value=0.22 Score=60.97 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhccccccc-ccceeEEEEecCCCCHHHHHHH
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVND-HFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
-++++|.++.++.+...+... +.+.++|++|+||||+|+.+++ .... .|...+++.-+ ..+...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHH
Confidence 347899998888877777543 2555999999999999999997 3332 33334433322 2344556777
Q ss_pred HHHHccC
Q 000782 244 ILESLGE 250 (1287)
Q Consensus 244 i~~~l~~ 250 (1287)
++..++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 7766654
No 451
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.76 E-value=0.61 Score=52.08 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=35.0
Q ss_pred eEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHH
Q 000782 323 VFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAA 372 (1287)
Q Consensus 323 ~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 372 (1287)
++++++++.+|+..++..++-.+--. .....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998877433221 11344556777777789998644
No 452
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.75 E-value=0.1 Score=57.10 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=35.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE 234 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 234 (1287)
+..+++.|+|.+|+|||++|.++.. ....+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4668999999999999999999987 45555888999988775
No 453
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.73 E-value=0.14 Score=48.01 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=39.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCC
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTL 271 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 271 (1287)
..-|.|.|-||+||||+|.+++.- . ..-|+++|+-..-..++...=+... ...-+.+.+.+.|..++.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~gyDE~y~---c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEGYDEEYK---CHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhccccccc---CccccHHHHHHHHHHHHhc
Confidence 345789999999999999999852 1 1235666654322222221111111 1234556666666666644
No 454
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.70 E-value=0.37 Score=55.60 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCC-------CCCCCChHHH--
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGES-------CGHITQLEPL-- 261 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 261 (1287)
.-..++|+|..|+|||||++.++... +.+..+++.+++. ..+.+.+.+..+.=... .......+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998632 2344555555554 34445555443210000 0111111111
Q ss_pred ---HHHHHHHc--CCCeEEEEEeCC
Q 000782 262 ---QSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 262 ---~~~l~~~l--~~k~~LlVlDdv 281 (1287)
.-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 11234444 589999999999
No 455
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.67 E-value=0.14 Score=56.62 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=35.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHH
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKA 243 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 243 (1287)
.+++.+.|.||+||||+|.+.+- ........+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47999999999999999988654 33333345777777777666665543
No 456
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.66 E-value=0.11 Score=55.66 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccc-cceeEEEEecCC
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDH-FELKAWAFVSDE 234 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~ 234 (1287)
.-.++.|.|.+|+|||++|.+++.. .... =..++|++..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC
Confidence 4579999999999999999998753 2222 346778877654
No 457
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.65 E-value=0.55 Score=54.20 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCC-HHHHHHHHHHHccCCC-----CCCCC--hHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFD-LVKVTKAILESLGESC-----GHITQ--LEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~-----~~~~~--~~~--- 260 (1287)
+-+.++|+|..|+|||||++++++... -+.++++-+++... +.+...+.+..-+... ...++ ...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999987322 23455566666543 4444444443321111 01111 111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 111234444 589999999999
No 458
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.58 E-value=0.49 Score=49.00 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999985
No 459
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.56 E-value=0.091 Score=50.99 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 000782 195 VIPLVGMGGVGKTTLAQVVY 214 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~ 214 (1287)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 460
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.56 E-value=0.88 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
-.+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 461
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.53 E-value=0.62 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.-.+++|+|..|.|||||++.+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999876
No 462
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.51 E-value=0.077 Score=66.66 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+.+++.|+|+.|.||||+.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347999999999999999998864
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.50 E-value=0.09 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.+++|+|++|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 464
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.45 E-value=0.33 Score=60.05 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=57.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCCCC-----CCCChHHHHHHH
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGESCG-----HITQLEPLQSAL 265 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 265 (1287)
..-+++-|.|.+|+||||||.+++.. ....-..++|+.....++. ..+++++.+.. .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45688999999999999999887652 2223356789888777664 35666665432 234445555566
Q ss_pred HHHcC-CCeEEEEEeCC
Q 000782 266 KRKLT-LKRYLLVLDDL 281 (1287)
Q Consensus 266 ~~~l~-~k~~LlVlDdv 281 (1287)
...++ ++.-+||+|-+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 66553 46778999988
No 465
>PLN02348 phosphoribulokinase
Probab=92.43 E-value=0.35 Score=54.56 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
++..+|+|.|.+|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 466
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.43 E-value=0.13 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
...+++|+|..|.|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999873
No 467
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.43 E-value=0.19 Score=54.49 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.|.++|.+|+||||+|+++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 468
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.40 E-value=0.68 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
-.+++|+|..|.|||||++.++.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999998874
No 469
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.39 E-value=0.08 Score=53.79 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|+|.|.+|.||||+|+.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 470
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.37 E-value=0.69 Score=53.41 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=49.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecC-CCCHHHHHHHHHHHccCCC-------CCCCChH----
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSD-EFDLVKVTKAILESLGESC-------GHITQLE---- 259 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 259 (1287)
.-+.++|+|..|.|||||++.++..... ...++. .+++ ...+.+.++..+..-+... .+.....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 4468899999999999999999874321 122332 3333 3556666665554422111 0111111
Q ss_pred -HHHHHHHHHc--CCCeEEEEEeCC
Q 000782 260 -PLQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 260 -~~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
.....+.+++ +++++|||+||+
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 1112233343 579999999998
No 471
>PRK08149 ATP synthase SpaL; Validated
Probab=92.35 E-value=0.64 Score=53.63 Aligned_cols=86 Identities=12% Similarity=0.239 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCC-------CCCCChH----
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESC-------GHITQLE---- 259 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 259 (1287)
+-..++|+|..|.|||||+..++.... -+.++...+... .++..+..+..+...... .+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346889999999999999999987322 223334444443 345555555554322111 1111111
Q ss_pred -HHHHHHHHHc--CCCeEEEEEeCC
Q 000782 260 -PLQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 260 -~~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
.....+.+++ ++|++||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1112233343 589999999999
No 472
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.32 E-value=0.82 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-.+++|+|..|.|||||++.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999986
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.31 E-value=0.096 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
...|.++|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.30 E-value=0.082 Score=55.18 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|+|.|.+|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 475
>PRK15453 phosphoribulokinase; Provisional
Probab=92.28 E-value=0.52 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+..+|+|.|.+|.||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999885
No 476
>PRK05922 type III secretion system ATPase; Validated
Probab=92.27 E-value=0.58 Score=53.98 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=48.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCC-CCHHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDE-FDLVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
+-..++|+|..|+|||||.+.+.... .-+..+++-+++. ..+.+.+.+......... .+......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34578999999999999999998632 1233344444443 334444444443322211 01111111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 589999999999
No 477
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.96 Score=44.77 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
..+.|.|..|+|||||-+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 5788999999999999999875
No 478
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.26 E-value=0.13 Score=52.72 Aligned_cols=37 Identities=32% Similarity=0.345 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEe
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFV 231 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 231 (1287)
.+++.|+|+.|+|||||++.+.. ....+|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999997 45566755554443
No 479
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=92.26 E-value=0.73 Score=57.67 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHHHHHHHHHccCC
Q 000782 172 EEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKVTKAILESLGES 251 (1287)
Q Consensus 172 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 251 (1287)
...+++|.+.+... .|+.|+|..|.||||-.-+++.+.-. .....+-+.-.+......+.+.++++++..
T Consensus 52 ~~~~~~i~~ai~~~--------~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQN--------QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHhC--------CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 45577888888554 79999999999999988887764222 122344344344445667778888888765
Q ss_pred CCC-------------------CCChHHHHHHHH-HHcCCCeEEEEEeCCCCCChhhHhHh----cccCCCCCCCcEEEE
Q 000782 252 CGH-------------------ITQLEPLQSALK-RKLTLKRYLLVLDDLWGENYNEWEVL----QLPFRGGAHGSKIIV 307 (1287)
Q Consensus 252 ~~~-------------------~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~~----~~~l~~~~~gs~ilv 307 (1287)
.++ ..+...+.++++ +.+-.+--.||+|.+++-... -+-+ ...+....+.-||||
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~-tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN-TDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHH-HHHHHHHHHHHHhhcCCCceEEE
Confidence 321 012223333333 233344558999999764321 1111 111222222479999
Q ss_pred EcCchhh
Q 000782 308 TTRSENV 314 (1287)
Q Consensus 308 TtR~~~v 314 (1287)
+|=.-+.
T Consensus 201 mSATld~ 207 (845)
T COG1643 201 MSATLDA 207 (845)
T ss_pred EecccCH
Confidence 8875443
No 480
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.24 E-value=0.0054 Score=61.47 Aligned_cols=87 Identities=22% Similarity=0.204 Sum_probs=77.2
Q ss_pred CcccC-ccccCCCccceEecCCCCCcccchhhhcccCccEEeecCcccccccCCCCCCCCCceEEEecCCccccCCcCCC
Q 000782 586 IVELP-DLIGDLKHLRYLDLSNTSIKSLPESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNLQQLPPHMG 664 (1287)
Q Consensus 586 i~~lp-~~~~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l~~lp~~i~ 664 (1287)
++.+| ..+.....-+.||++.|++..+-..|+.++.|..||++.|. +..+|..++.+..++++++..|+.+..|..++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 34555 45677789999999999999888889999999999999985 78899999999999999999999999999999
Q ss_pred CCCCCCccC
Q 000782 665 GLKNLRTLP 673 (1287)
Q Consensus 665 ~L~~L~~L~ 673 (1287)
+++.++.++
T Consensus 109 k~~~~k~~e 117 (326)
T KOG0473|consen 109 KEPHPKKNE 117 (326)
T ss_pred ccCCcchhh
Confidence 999998874
No 481
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.23 E-value=0.5 Score=54.47 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCC-----CCCCC--hHHH--
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESC-----GHITQ--LEPL-- 261 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~--~~~~-- 261 (1287)
+-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++....+..-+... ...++ ....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999997422 2466777777664 34444444332211110 01111 1111
Q ss_pred ---HHHHHHHc--CCCeEEEEEeCC
Q 000782 262 ---QSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 262 ---~~~l~~~l--~~k~~LlVlDdv 281 (1287)
.-.+.+++ +++++|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233444 689999999999
No 482
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.19 E-value=0.085 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 483
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.18 E-value=0.16 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhc
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.-.+++|+|.+|.||||||+.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346999999999999999999975
No 484
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.14 E-value=1.5 Score=48.84 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=32.7
Q ss_pred CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchhHHHHHHhhh
Q 000782 320 TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLL 379 (1287)
Q Consensus 320 ~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 379 (1287)
...++++...+.+|+.++..-+.-..--....+. ++--+++.=..+|+|--+.-+..++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~-Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG-EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc-ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3457889999999998887655421100000000 2334456666688885555444443
No 485
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.12 E-value=0.26 Score=52.37 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+|+|.|.+|.||||+|+++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998886
No 486
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.11 E-value=0.82 Score=53.59 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=63.5
Q ss_pred EEEEEEcCCCChHHH-HHHHHhcccccccccceeEEEEecCC--CCHHHHHHHHHHHccCCCCC----------C-----
Q 000782 194 CVIPLVGMGGVGKTT-LAQVVYKDEKVNDHFELKAWAFVSDE--FDLVKVTKAILESLGESCGH----------I----- 255 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~----------~----- 255 (1287)
+||.|+|..|.|||| ||+.+|.+-... ... +-+.+. .....+.+.+.+.+++.-+. .
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edGY~~---~Gm--IGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDGYAD---NGM--IGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhccccc---CCe--eeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 799999999999998 677777642111 122 334443 34456677777777554321 0
Q ss_pred -----CChHHHHHHHHHHcCCCeEEEEEeCCCCCChhhHhH----hcccCCCCCCCcEEEEEcCchhh
Q 000782 256 -----TQLEPLQSALKRKLTLKRYLLVLDDLWGENYNEWEV----LQLPFRGGAHGSKIIVTTRSENV 314 (1287)
Q Consensus 256 -----~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~----~~~~l~~~~~gs~ilvTtR~~~v 314 (1287)
.+---+.+.|.+..-+|--.||+|.+.+-.. .-+. +...+ .....-|+|||+-..+.
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~l-arRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVL-ARRRDLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHH-HhhccceEEEeeccccH
Confidence 1111223334444445667899999865421 1111 12222 22346799999876543
No 487
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.10 E-value=0.5 Score=54.55 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=48.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCC-------CCCCChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESC-------GHITQLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 260 (1287)
+-..++|+|..|.|||||++.+..... .+..+.+.+++.. .+.++.......=.... .+......
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 346799999999999999998886321 1334445555543 34444444433211100 11111111
Q ss_pred --HHHHHHHHc--CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL--TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l--~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 111233444 589999999998
No 488
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.08 E-value=0.85 Score=48.54 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcc
Q 000782 193 MCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 193 ~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
-.+++|+|..|.|||||++.++.-
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999863
No 489
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.08 E-value=0.096 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 490
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.08 E-value=0.12 Score=50.05 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+++|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 491
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=1.9 Score=51.63 Aligned_cols=179 Identities=20% Similarity=0.199 Sum_probs=89.9
Q ss_pred ccccchhhHHH---HHHHHhcCcc---cCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCCCHHHH
Q 000782 167 RIYGREEDADK---LIDFLLKDVE---ATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEFDLVKV 240 (1287)
Q Consensus 167 ~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 240 (1287)
++-|.|+.+++ +++.|.++.. .+..-++=|.++|++|.|||.||++++.... -.| ++.|..
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPF-----f~iSGS------ 217 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSISGS------ 217 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCc-----eeccch------
Confidence 67787766554 5555654310 1223356788999999999999999998433 223 222221
Q ss_pred HHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCC----------ChhhHhH----hcccCCCCC--CCcE
Q 000782 241 TKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGE----------NYNEWEV----LQLPFRGGA--HGSK 304 (1287)
Q Consensus 241 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----~~~~l~~~~--~gs~ 304 (1287)
+..+.+-+ .......+...+..+.-+++|++|.+... ..+++++ +........ .|-.
T Consensus 218 --~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 218 --DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred --hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 11111100 01112223334444556789999877321 1123333 222222222 3444
Q ss_pred EEEEcCchhhHhHh--c---CcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCCchh
Q 000782 305 IIVTTRSENVAQIV--G---TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPL 370 (1287)
Q Consensus 305 ilvTtR~~~v~~~~--~---~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 370 (1287)
|+-.|-.++|.... . -.+.+.++..+-..-.+.++-++-...-. ..-++. .|++.+-|.--
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLK----KIARGTPGFSG 356 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHH----HHhhhCCCccc
Confidence 44455556665332 2 23456666666677777777666333221 111222 27777766543
No 492
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.02 E-value=0.24 Score=48.56 Aligned_cols=35 Identities=31% Similarity=0.553 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 173 EDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 173 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
+.++++.+.+. + ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 44677888773 2 68999999999999999999874
No 493
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.99 E-value=0.59 Score=54.01 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEEecCCC-CHHHHHHHHHHHccCCC-----CCCC--ChHH---
Q 000782 192 GMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAFVSDEF-DLVKVTKAILESLGESC-----GHIT--QLEP--- 260 (1287)
Q Consensus 192 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~--~~~~--- 260 (1287)
+-+.++|.|.+|+|||||+.++..... +.+=..++++-+++.. .+.++++++.+.=.... ...+ ....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446889999999999999999876321 1112366777776654 45566666643211110 0111 1111
Q ss_pred --HHHHHHHHc---CCCeEEEEEeCC
Q 000782 261 --LQSALKRKL---TLKRYLLVLDDL 281 (1287)
Q Consensus 261 --~~~~l~~~l---~~k~~LlVlDdv 281 (1287)
..-.+.+++ +++++|+|+||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecch
Confidence 112345555 568999999999
No 494
>PRK13947 shikimate kinase; Provisional
Probab=91.98 E-value=0.1 Score=52.91 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 000782 195 VIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 195 vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 495
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=4 Score=49.36 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred ccCCCC----ccccchhhHHHHHHHHhcCc------ccCCCCeEEEEEEcCCCChHHHHHHHHhcccccccccceeEEEE
Q 000782 161 TSLVDD----RIYGREEDADKLIDFLLKDV------EATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKVNDHFELKAWAF 230 (1287)
Q Consensus 161 ~~~~~~----~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 230 (1287)
+|.++. ++-|-++.+.+|.+-+.-+. ..+-.+..=|.++|++|.|||-+|++|+. +..-.| ++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL~F-----lS 735 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSLNF-----LS 735 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hceeeE-----Ee
Q ss_pred ecCCCCHHHHHHHHHHHccCCCCCCCChHHHHHHHHHHcCCCeEEEEEeCCCCCCh-----------------hhHhHhc
Q 000782 231 VSDEFDLVKVTKAILESLGESCGHITQLEPLQSALKRKLTLKRYLLVLDDLWGENY-----------------NEWEVLQ 293 (1287)
Q Consensus 231 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------------~~~~~~~ 293 (1287)
|-.. +++.... ....+...+...+.-..++++|.||.+.+-.+ .-..++-
T Consensus 736 VKGP----ELLNMYV---------GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD 802 (953)
T KOG0736|consen 736 VKGP----ELLNMYV---------GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD 802 (953)
T ss_pred ecCH----HHHHHHh---------cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh
Q ss_pred ccCCCCCCCcEEEEEcCchhhHhHh-----cCcCeEEccCCChhhHHHHHHHHHcCCCCCCCCchhhHHHHHHHhhcCC
Q 000782 294 LPFRGGAHGSKIIVTTRSENVAQIV-----GTVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKG 367 (1287)
Q Consensus 294 ~~l~~~~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 367 (1287)
..-.....+-=||=.|..++..... .-+..+.+++=+++++..=..+..-+...-+.+-++.++|++.-...-|
T Consensus 803 gls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TG 881 (953)
T KOG0736|consen 803 GLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTG 881 (953)
T ss_pred cccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCch
No 496
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.94 E-value=0.11 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 000782 194 CVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 194 ~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
++|.+.|++|.||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 497
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.89 E-value=0.17 Score=55.71 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=32.4
Q ss_pred ccccchhhHHHHHHHHhcCccc-----------CCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEA-----------TDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+..|-..+...|.+.+.....- .-..-.+++|+|.+|+||||+.+++..
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 4556566666776665321100 112345899999999999999998875
No 498
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.89 E-value=0.15 Score=49.62 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 191 DGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 191 ~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
.+..+|...|.+|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 499
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.86 E-value=0.23 Score=50.61 Aligned_cols=41 Identities=32% Similarity=0.283 Sum_probs=29.8
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK 215 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~ 215 (1287)
+++|.+..+..+.-...+ .+-+.++|.+|+|||++|+.+..
T Consensus 4 dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 578888777776655543 26788999999999999999864
No 500
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.83 E-value=0.58 Score=56.47 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhcCcccCCCCeEEEEEEcCCCChHHHHHHHHhcc
Q 000782 167 RIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKD 216 (1287)
Q Consensus 167 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 216 (1287)
.++|+...+.++.+.+..- ......|.|+|.+|+|||++|+.+++.
T Consensus 139 ~lig~s~~~~~l~~~~~~~----~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRL----SRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHH----hccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 5889888888877766433 123456889999999999999999874
Done!