Query 000782
Match_columns 1287
No_of_seqs 544 out of 5376
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 16:31:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000782.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_553-557//hhsearch_pdb/000782hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 443.1 35.9 601 566-1260 69-742 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 438.6 29.5 600 568-1237 94-742 (768)
3 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 408.4 23.0 316 169-507 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 379.3 39.7 574 565-1240 40-627 (680)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 374.8 39.8 562 574-1256 25-620 (680)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 363.6 26.4 309 165-505 123-452 (1249)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 351.5 38.1 512 575-1239 34-564 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 348.8 33.4 93 578-672 16-110 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 345.8 41.8 521 572-1239 22-564 (844)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 345.4 34.6 137 1091-1240 424-563 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=443.13 Aligned_cols=601 Identities=19% Similarity=0.154 Sum_probs=358.5
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCH--HHHCCCCCCEEEECCCCCCCCCCCCC-C
Q ss_conf 378725899500999347898545934269886556734788786-4552--23226676487606866642168898-9
Q 000782 566 THDLLKNFSRLRVLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIK-SLPE--SIAALYNLQTLILYSCRYLIQLPKHM-G 641 (1287)
Q Consensus 566 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~--~i~~L~~L~~L~L~~n~~~~~lp~~~-~ 641 (1287)
.+..+..++.|+.++++.+.+..+|..++.+++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 69657316802246786888678703324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCEEEEECCCCCCCCCC-C---CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC
Q ss_conf 99875189844975554786-7---7898889825951207788768213213214779418914468899014655158
Q 000782 642 DLFNLRFLDIRGCNLQQLPP-H---MGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANL 717 (1287)
Q Consensus 642 ~L~~L~~L~l~~n~l~~lp~-~---i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l 717 (1287)
++++|++|++++|.+...++ . +.++++|+.|....+......
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------- 194 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---------------------------------- 194 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC----------------------------------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC----------------------------------
T ss_conf 3889998989798358858715566435898898989788034657----------------------------------
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC-CCC
Q ss_conf 8777888089974289999854888401788889773799423999999797999999710998704789998999-898
Q 000782 718 KDKKYLNKLELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLPP-LGQ 796 (1287)
Q Consensus 718 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-l~~ 796 (1287)
.....++|+.|++.++.....+..+. .+++|+.|++++|.+.+..+. +..
T Consensus 195 ---------------------------~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~ 245 (768)
T 3rgz_A 195 ---------------------------DVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAIST 245 (768)
T ss_dssp ---------------------------BCTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSCCCSCHHHHTTT
T ss_pred ---------------------------CCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf ---------------------------84547868989892882788771112--6999998979488587816577744
Q ss_pred CCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCC
Q ss_conf 666652000247660484974336884344456542366446898887434799987-8862368433798872348987
Q 000782 797 LPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGE-FPHLHELCIENCPKFSKEIPRS 875 (1287)
Q Consensus 797 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~L~~L~l~~c~~l~~~lp~~ 875 (1287)
+++|++|++++|.+...++. ..+++|++|++.++ .+....+..+.. +++|+.|++++ +.+.+.+|..
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~----------~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~-n~l~~~~p~~ 313 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPP----------LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSG-NHFYGAVPPF 313 (768)
T ss_dssp CSSCCEEECCSSCCEESCCC----------CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCS-SEEEECCCGG
T ss_pred CCCCCEEECCCCCCCCCCCC----------CCCCCCCEEECCCC-CCCCCCCHHHHHHCCCCCEEECCC-CCCCCCCCHH
T ss_conf 88889898988866571672----------43687898979178-557725888884468688998968-9677842367
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCC-CCCCEEEECC
Q ss_conf 887678898157886656999862045660342133531024586423542022443334043311678-7550375045
Q 000782 876 LVSLKTLEILNCRELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASEFFHRLT-VLHDLQLVNC 954 (1287)
Q Consensus 876 l~~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 954 (1287)
+.++..|+.++++++...+.+| ...+..+++|+.|++++|.....++..+ ..++ +|+.|++++|
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip--------------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELP--------------MDTLLKMRGLKVLDLSFNEFSGELPESL-TNLSASLLTLDLSSN 378 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECC--------------HHHHTTCTTCCEEECCSSEEEECCCTTH-HHHTTTCSEEECCSS
T ss_pred HHCCCCCCEEECCCCCCCCCCC--------------HHHHHCCCCCCEEECCCCCCCCCCCHHH-HHHHCCCCEEECCCC
T ss_conf 7558776677897885257379--------------7887248888788484784376230989-863227719986278
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 52000001113444663331100125543665211266867773789605358687875468999989388734999886
Q 000782 955 DELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAA 1034 (1287)
Q Consensus 955 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~ 1034 (1287)
......+..+....+++|+.|++++|.+.+..+..+..++ .|++|++++|.....+|..+..+++|+.|++++|.+...
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 7478767666533247761898977846542487775689-879898958846685467774499889898978815471
Q ss_pred CC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 68-766768766677245765234577756688986257987699998757899-9999845898508999875787867
Q 000782 1035 LP-EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDG-ELPLTLQHLKISNCPNLNFLPAGLL 1112 (1287)
Q Consensus 1035 ~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~ls~~~~l~~~~~~~~ 1112 (1287)
+| .+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|......|.. ...++|+.|++++|...+.+|.. +
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l 534 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-L 534 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-G
T ss_pred CCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC--CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-H
T ss_conf 897882877732999019951375887881699--8998975399518968768856899998989789433748877-7
Q ss_pred CCCCCCCEEEECCCCCC-CCCCCCCCCC----------------------------------------------------
Q ss_conf 78887643896276687-6454346667----------------------------------------------------
Q 000782 1113 HKNTCLECLQISGCSLN-SFPVICSSNL---------------------------------------------------- 1139 (1287)
Q Consensus 1113 ~~~~~L~~L~l~~n~i~-~~~~~~~~~l---------------------------------------------------- 1139 (1287)
..+++|+.|++++|.++ .+|...+...
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 08898998989888468827957860421223201345421111344432222332221001355632320023211001
Q ss_pred ------CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEEECCCCCC
Q ss_conf ------6565799998898635478137998656534688888663872059994236999-999994669772688887
Q 000782 1140 ------SSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG-GLPPNLKSLSISDCENLV 1212 (1287)
Q Consensus 1140 ------~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~~~~~L~~L~Ls~n~~~~ 1212 (1287)
.......+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|.. ..+++|+.|+|++|.+.+
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 13310046274334033566579785880155587788414157878486880388789678477789989897880238
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 674237999986807451688886889999888755042045757667
Q 000782 1213 TLPNQMQSMTSLQDLTISNCIHLESFPEGGLPPNLKSLCIIECINLEA 1260 (1287)
Q Consensus 1213 ~~~~~l~~l~~L~~L~ls~n~~l~~~~~~~~~~~L~~L~i~~~~~L~~ 1260 (1287)
.+|..+..+++|++|++++|++...+|.+..+.++....+.+++.|..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCC
T ss_conf 688677578878978796881556089960102489777569832108
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=438.60 Aligned_cols=600 Identities=19% Similarity=0.146 Sum_probs=362.8
Q ss_pred HHHCCCCCCCEEEECCCCCC-CCCC--CCCCCCCCCEEECCCCCCC-CCCHHH-HCCCCCCEEEECCCCCCCCCCCC---
Q ss_conf 87258995009993478985-4593--4269886556734788786-455223-22667648760686664216889---
Q 000782 568 DLLKNFSRLRVLSLSHYEIV-ELPD--LIGDLKHLRYLDLSNTSIK-SLPESI-AALYNLQTLILYSCRYLIQLPKH--- 639 (1287)
Q Consensus 568 ~~~~~l~~Lr~L~L~~~~i~-~lp~--~~~~l~~L~~L~Ls~n~i~-~lp~~i-~~L~~L~~L~L~~n~~~~~lp~~--- 639 (1287)
..|..+++|++|+|++|.+. .+|. .++.+++|++|+|++|.+. .+|..+ .++++|++|++++|.+....|..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 33245788998989898578707896787278899989896882677479778563889998989798358858715566
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
Q ss_conf 89998751898449755547867789888982595120778876821321321477941891446889901465515887
Q 000782 640 MGDLFNLRFLDIRGCNLQQLPPHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKD 719 (1287)
Q Consensus 640 ~~~L~~L~~L~l~~n~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~ 719 (1287)
+.++++|++|++++|.+....+ +..+++|++|+...+..... +.. +..
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~--~~~-----------------------------l~~ 221 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTG--IPF-----------------------------LGD 221 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSC--CCB-----------------------------CTT
T ss_pred HCCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCC--CCC-----------------------------CCC
T ss_conf 4358988989897880346578-45478689898928827887--711-----------------------------126
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCEEEEEEECCCCCCCCCC-CCC-
Q ss_conf 778880899742899998548884017888897737994239999-99797999999710998704789998999-898-
Q 000782 720 KKYLNKLELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAK-FPRWTGDPSYSNLVFLSLINCRNCTYLPP-LGQ- 796 (1287)
Q Consensus 720 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-l~~- 796 (1287)
+.+|+.|.+..+... ......+...++|+.|++.++.... +|.+ .+++|+.|++++|.+.+.+|. +..
T Consensus 222 l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 222 CSALQHLDISGNKLS-----GDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp CCSCCEEECCSSCCC-----SCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred CCCCCEEECCCCCCC-----CCCCHHHHCCCCCCEEECCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf 999998979488587-----816577744888898989888665716724----36878989791785577258888844
Q ss_pred CCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 666652000247660484974336884344456542366446898887434799-9878862368433798872348987
Q 000782 797 LPSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPD-VGEFPHLHELCIENCPKFSKEIPRS 875 (1287)
Q Consensus 797 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~L~~L~l~~c~~l~~~lp~~ 875 (1287)
+++|++|++++|.+...++..+ ..+++|++|++.++. +.+..+.. +..+++|+.|++++ +.+.+.+|..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~--------~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~-n~l~~~~p~~ 362 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFF--------GSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSF-NEFSGELPES 362 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGG--------GGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCS-SEEEECCCTT
T ss_pred CCCCCEEECCCCCCCCCCCHHH--------HCCCCCCEEECCCCC-CCCCCCHHHHHCCCCCCEEECCC-CCCCCCCCHH
T ss_conf 6868899896896778423677--------558776677897885-25737978872488887884847-8437623098
Q ss_pred CCCCC-EEEECCCCCCCCCC---------CCCCCCEEEEECCCHH--HHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 88767-88981578866569---------9986204566034213--353102458642354202244333404331167
Q 000782 876 LVSLK-TLEILNCRELSWIP---------CLPQIQNLILEECGQV--ILESIVDLTSLVKLRLYKILSLRCLASEFFHRL 943 (1287)
Q Consensus 876 l~~L~-~L~~l~~~~~~~~~---------~lp~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 943 (1287)
+.++. .|+.++++++...+ .++.|+.|.+.+|... .+..+..+++|+.|++++| .+....+..+..+
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l 441 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSL 441 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred HHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCCHHHHCC
T ss_conf 986322771998627874787676665332477618989778465424877756898798989588-4668546777449
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87550375045520000011134446633311001255436652112668677737896053586878754689999893
Q 000782 944 TVLHDLQLVNCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNT 1023 (1287)
Q Consensus 944 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~ 1023 (1287)
++|+.|++.+|......+..+. .+++|+.|++++|.+.+..|..+..++ +|+.|++++|.+...+|..+..+++|+.
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCEEECCCCCCCCCCCHHHC--CCCCCEEEEECCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 9889898978815471897882--877732999019951375887881699-8998975399518968768856899998
Q ss_pred EEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEE---------EECCCCCCCCC--------C
Q ss_conf 8873499988668-7667687666772457652345777566889862579---------87699998757--------8
Q 000782 1024 LKIINCPSLAALP-EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFF---------ELDGCSSLISF--------P 1085 (1287)
Q Consensus 1024 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L---------~l~~~~~l~~~--------~ 1085 (1287)
|++++|.+.+.+| .+..+++|+.|++++|++.+.+|..+.... .+..+ .+......... .
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT--TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred EECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC--CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98978943374887770889899898988846882795786042--1223201345421111344432222332221001
Q ss_pred CCC------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 999------99984589850899987578786778887643896276687645434666765657999988986354781
Q 000782 1086 DGE------LPLTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEIC 1159 (1287)
Q Consensus 1086 ~~~------~~~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~ 1159 (1287)
.+. ....+..++++.+...+.+|. .+..+++|+.|++++|.+++..+..+ ..+++|+.|+++
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-~~~~l~~L~~LdLs~N~l~g~ip~~l-----------~~l~~L~~L~Ls 664 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKEI-----------GSMPYLFILNLG 664 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCC-SCSSSBCCCEEECCSSCCBSCCCGGG-----------GGCTTCCEEECC
T ss_pred CCCCCHHHHCCCCCCCCCCCCCEECCCCCH-HHHCCCCCCEEECCCCCCCCCCCHHH-----------HCCCCCCEEECC
T ss_conf 355632320023211001133100462743-34033566579785880155587788-----------414157878486
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 37998656534688888663872059994236999-9999946697726888876742379999868074516888868
Q 000782 1160 NCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG-GLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLES 1237 (1287)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~~l~~ 1237 (1287)
+|.....+|..+..+++|+.|++++|++.+.+|.. ..+++|+.|++++|++.+.+|.. ..+..+....+.+|+.+.-
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCC
T ss_conf 88038878967847778998989788023868867757887897879688155608996-0102489777569832108
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=408.36 Aligned_cols=316 Identities=18% Similarity=0.255 Sum_probs=259.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC--CCCCCCCCCEEEEEEECCCC--CHHHHHHHH
Q ss_conf 00145599999998327556899819999992799809999999824--52222444215999955887--989999999
Q 000782 169 YGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYK--DEKVNDHFELKAWAFVSDEF--DLVKVTKAI 244 (1287)
Q Consensus 169 vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 244 (1287)
|||++++++|.++|... .....++|+|+||||+||||||+++|+ +.+++.+|+.++|+++++.+ +...+++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 78417999999987251---578962899986999988999999998406987466995799997898787999999999
Q ss_pred HHHCCCCCC-------CCCCHHHHHHHHHHHCCCC-EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 998068889-------9899478999999872997-19999809998993347672024788999948999748612676
Q 000782 245 LESLGESCG-------HITQLEPLQSALKRKLTLK-RYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENVAQ 316 (1287)
Q Consensus 245 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~~~~ 316 (1287)
+++++.... ...+.+.+...++++++++ ||||||||+|+.+...|... +||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCC--------CCCEEEEECCCHHHHH
T ss_conf 99985375534555533146999999999997689848999979997144154326--------9988999749779999
Q ss_pred HHC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 736-8481984699956489999999708999999951568889998622896348999986613899976999987112
Q 000782 317 IVG-TVPVFHLQELSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQHILNSE 395 (1287)
Q Consensus 317 ~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 395 (1287)
.++ ...++++++|+.++||+||.+.+++.. .++..++++++|+++|+|+||||+++|+.++.+ . .+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHHHHH
T ss_conf 7088973898999898999999998744899---855689999999999599839999999984434-4-8999875787
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH-----------HHCCCCCCCEECHHHHHHHHHHC--CCCCCCCCCCCHH
Q ss_conf 4479998888016899611389978244753-----------53145899522257799999981--8643678788735
Q 000782 396 VWELPDEKTGILPGLALSYHHLPSHLKPCFA-----------YCAIFPKGYEFEANDLVRLWMAE--GLMYEPRRNMQNE 462 (1287)
Q Consensus 396 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~-----------~~a~fp~~~~i~~~~l~~~w~a~--g~~~~~~~~~~~~ 462 (1287)
.+... ...+..++.+||+.||++.|.||+ |||+||+++.|+ +..|+|+ ||+.........+
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred HHCCC--HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHH
T ss_conf 61364--77789897516202267999997526522336743235608997666----5331101355002677899999
Q ss_pred HHHHHHHHHHHHCCCCEECCC-CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 657579999860774000378-843210036899999753035179
Q 000782 463 DVGSHYFHDLLSRSLFQRSSR-NISRFIMHDLINDLAQFAAGERCL 507 (1287)
Q Consensus 463 ~~~~~~l~~L~~~~Ll~~~~~-~~~~~~mHdli~~~~~~~~~~~~~ 507 (1287)
+.++ |+++|+++||++.... ...+|+|||+||+||+.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999-99999875883671479804999676999999999889899
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=379.32 Aligned_cols=574 Identities=18% Similarity=0.112 Sum_probs=303.0
Q ss_pred CHHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 0378725899500999347898545-9342698865567347887864552-2322667648760686664216889899
Q 000782 565 VTHDLLKNFSRLRVLSLSHYEIVEL-PDLIGDLKHLRYLDLSNTSIKSLPE-SIAALYNLQTLILYSCRYLIQLPKHMGD 642 (1287)
Q Consensus 565 ~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~lp~~~~~ 642 (1287)
++...|..+++|++|+|++|.+..+ |..|.++++|++|+|++|.++.+|. .|.++++|++|++++|.+....|..|+.
T Consensus 40 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 59788717876758878899648569778740667688889998567568545303888898989899668539667415
Q ss_pred CCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
Q ss_conf 9875189844975554786-778988898259512077887682132132147794189144688990146551588777
Q 000782 643 LFNLRFLDIRGCNLQQLPP-HMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKK 721 (1287)
Q Consensus 643 L~~L~~L~l~~n~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ 721 (1287)
+++|++|++++|.+..+++ .++.+++|+.|....+.
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~------------------------------------------- 156 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK------------------------------------------- 156 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-------------------------------------------
T ss_pred CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-------------------------------------------
T ss_conf 6788889898995246672111245567779745884-------------------------------------------
Q ss_pred CCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC----CCCCC
Q ss_conf 88808997428999985488840178888977379942399999979799999971099870478999899----98986
Q 000782 722 YLNKLELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWTGDPSYSNLVFLSLINCRNCTYLP----PLGQL 797 (1287)
Q Consensus 722 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~----~l~~l 797 (1287)
.. ......+.. ...++|+.|++.++....++..... .+++|+.+.+.++.+..... .....
T Consensus 157 -----------l~--~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 157 -----------IQ--ALKSEELDI-FANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp -----------CC--CBCHHHHGG-GTTCEESEEECTTCCCCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred -----------CC--CCCHHHHHC-CCCCCCCEEECCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf -----------36--529788624-4666321798889825655815553-22344554305664680567778777531
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 66652000247660484974336884344456542366446898887434799987886236843379887234898788
Q 000782 798 PSLKNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLV 877 (1287)
Q Consensus 798 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~ 877 (1287)
++|+.|++++|.+....+..+.. ...++|+.|++++ +.+....+..++.+++|+.|++++ +.+.+..|..+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~------l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~ 293 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLG------LKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYFFLEY-NNIQHLFSHSLH 293 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGG------GGGSCCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS-CCBSEECTTTTT
T ss_pred CCCCEEECCCCCCCCCCHHHHHC------CCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCHHHHC
T ss_conf 51008874577436468667514------6767788877878-876756802116741056855778-856765865626
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 76788981578866569998620456603421335310245864235420224433340433116787550375045520
Q 000782 878 SLKTLEILNCRELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDEL 957 (1287)
Q Consensus 878 ~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 957 (1287)
++..|+.+++.++.....++ ....+......+..+++|+.|++++| .+..+....+.++++|+.|++++|...
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~------~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSIS------LASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TCTTCCEEECTTCBCCC------------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred CCCCCCEEECCCHHHHCCCC------CCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCCCHH
T ss_conf 78885577363313213333------35545438656246777888879898-268788557406568728988798014
Q ss_pred C--CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCC
Q ss_conf 0--000111344466333110012554366521126686777378960535868787-5468999989388734999886
Q 000782 958 L--VLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLP-DGLHSLKSLNTLKIINCPSLAA 1034 (1287)
Q Consensus 958 ~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~ 1034 (1287)
. .....+.....++|+.|++++|.+.++.+..+..++ +|+.|++++|.+...++ ..+.++++|+.|++++|++...
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred HHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEE
T ss_conf 432353220245568676688999977767754420778-8888867787575435755325754612784489975422
Q ss_pred CC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 68-766768766677245765234577756688986257987699998757899-9999845898508999875787867
Q 000782 1035 LP-EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDG-ELPLTLQHLKISNCPNLNFLPAGLL 1112 (1287)
Q Consensus 1035 ~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~ls~~~~l~~~~~~~~ 1112 (1287)
.+ .+..+++|+.|++++|.+... ...+.. ...++|+.|++++|... .++...|
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~~~------------------------~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 500 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALKNV------------------------DSSPSPFQPLRNLTILDLSNNNIA-NINDDML 500 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBCT------------------------TCSSCTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred CHHHHHCCCCCCCCHHCCCCCCCC------------------------CCCCCCCCCCCCCCEEECCCCCCC-CCCHHHH
T ss_conf 764550075431011014644225------------------------667764555787899989999877-6794463
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 78887643896276687645434666765657999988986354781379986565346888886638720599942369
Q 000782 1113 HKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFP 1192 (1287)
Q Consensus 1113 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 1192 (1287)
..+++|++|++++|.++.++...+.. .....+..+++|+.|++++|.....-+..+.++++|+.|++++|.+....+
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPG---GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTT---SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHCCC---CCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf 45534688858899730000000467---741423379988888899997887797773466675223899997776797
Q ss_pred CC-CCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCC
Q ss_conf 99-9999946697726888876742379-999868074516888868899
Q 000782 1193 AG-GLPPNLKSLSISDCENLVTLPNQMQ-SMTSLQDLTISNCIHLESFPE 1240 (1287)
Q Consensus 1193 ~~-~~~~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~ls~n~~l~~~~~ 1240 (1287)
.. ..+++|+.|++++|.+....+..+. .+++|+.|++++|++....+.
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 68378988888989999687059668301146657798318970257766
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=374.76 Aligned_cols=562 Identities=17% Similarity=0.077 Sum_probs=308.1
Q ss_pred CCCCEEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 950099934789854593-426988655673478878645-522322667648760686664216889899987518984
Q 000782 574 SRLRVLSLSHYEIVELPD-LIGDLKHLRYLDLSNTSIKSL-PESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDI 651 (1287)
Q Consensus 574 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l 651 (1287)
+++++|+|++|.+..++. .|.++++|++|++++|.++.+ |..+.++++|++|++++|.+....+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEE
Q ss_conf 4975554786-778988898259512077887682132132147794189144688990146551588777888089974
Q 000782 652 RGCNLQQLPP-HMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLELQW 730 (1287)
Q Consensus 652 ~~n~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 730 (1287)
++|.+..+|+ .++++++|++|+...+....
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------------------------------------- 135 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSS------------------------------------------------- 135 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-------------------------------------------------
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCCCCC-------------------------------------------------
T ss_conf 8996685396674156788889898995246-------------------------------------------------
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCC-CCCCCCCCCEEECCC
Q ss_conf 289999854888401788889773799423999999797-999999710998704789998999-898666652000247
Q 000782 731 SSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFPRWT-GDPSYSNLVFLSLINCRNCTYLPP-LGQLPSLKNLIIEGM 808 (1287)
Q Consensus 731 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 808 (1287)
.....+...++|+.|.+.++....++... ....+++|+.|++++|.+.+..+. +..+++|+.|.+.++
T Consensus 136 ----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 136 ----------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp ----------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC
T ss_pred ----------CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf ----------6721112455677797458843652978862446663217988898256558155532234455430566
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 66048497433688434445654236644689888743479998788--6236843379887234898788767889815
Q 000782 809 DAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFP--HLHELCIENCPKFSKEIPRSLVSLKTLEILN 886 (1287)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~L~~L~l~~c~~l~~~lp~~l~~L~~L~~l~ 886 (1287)
........... .....++|+.|.+.+ +.+....+..+..++ +|+.|++++ +++.+..+..+..+..|+.++
T Consensus 206 ~l~~~~~~~~~-----~~l~~~~L~~L~L~~-n~l~~~~~~~~~~l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 206 QLGPSLTEKLC-----LELANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp CCHHHHHHHHH-----HHHTTSCCCEEECTT-SCCCEECTTTTGGGGGSCCCEEECTT-SCCCEECTTTTTTCTTCCEEE
T ss_pred CCCHHHHHHHH-----HHHHHCCCCEEECCC-CCCCCCCHHHHHCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEE
T ss_conf 46805677787-----775315100887457-74364686675146767788877878-876756802116741056855
Q ss_pred CCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCEEEECCCCCCC--------CCHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 78866569998620456603421335310245864235420224433--------3404331167875503750455200
Q 000782 887 CRELSWIPCLPQIQNLILEECGQVILESIVDLTSLVKLRLYKILSLR--------CLASEFFHRLTVLHDLQLVNCDELL 958 (1287)
Q Consensus 887 ~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--------~~~~~~~~~l~~L~~L~l~~~~~~~ 958 (1287)
++++......| ..+..+++|+.|+++++.... .+....+..+++|+.|++++|....
T Consensus 279 L~~n~l~~~~~---------------~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 279 LEYNNIQHLFS---------------HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CCSCCBSEECT---------------TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCCCCCCCH---------------HHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 77885676586---------------562678885577363313213333355454386562467778888798982687
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCC--CCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 00011134446633311001255436--652112668-677737896053586878754689999893887349998866
Q 000782 959 VLSNQFGLLRNSSLRRLAIWKCSISL--LWPEEGHAL-PDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSLAAL 1035 (1287)
Q Consensus 959 ~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~-~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 1035 (1287)
..+..+ ..+++|+.|++++|.+.. +....+... .+.|+.|++++|.+....+..+..+++|+.|++++|.+...+
T Consensus 344 ~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 344 IKSNMF--TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCTTTT--TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCHHHH--CCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 885574--065687289887980144323532202455686766889999777677544207788888867787575435
Q ss_pred C--CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCCCC
Q ss_conf 8--76676876667724576523457775668898625798769999875789999998458985089998--7578786
Q 000782 1036 P--EIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPDGELPLTLQHLKISNCPNL--NFLPAGL 1111 (1287)
Q Consensus 1036 ~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ls~~~~l--~~~~~~~ 1111 (1287)
+ .+..+++|++|++++|.+....+..+. ..++|+.|++++|... +..|. .
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------------------~~~~L~~L~l~~n~l~~~~~~p~-~ 475 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFA-------------------------LVPSLQRLMLRRVALKNVDSSPS-P 475 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTT-------------------------TCTTCCEEECTTSCCBCTTCSSC-T
T ss_pred CCCCCCCCCCCCEEECCCCCCCEECHHHHH-------------------------CCCCCCCCHHCCCCCCCCCCCCC-C
T ss_conf 755325754612784489975422764550-------------------------07543101101464422566776-4
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC--------CCCCCCCCCCCEEEEC
Q ss_conf 77888764389627668764543466676565799998898635478137998656--------5346888886638720
Q 000782 1112 LHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISL--------PDDLYNFICLDKLLIS 1183 (1287)
Q Consensus 1112 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~ls 1183 (1287)
+..+++|+.|++++|.++.++...+ ..+++|++|++++|...... ...+.++++|+.|+++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDML-----------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT-----------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHH-----------CCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECC
T ss_conf 5557878999899998776794463-----------45534688858899730000000467741423379988888899
Q ss_pred CCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC---CCCCCCEEEECCCC
Q ss_conf 5999423699-9999994669772688887674237999986807451688886889999---88875504204575
Q 000782 1184 NCPKLVSFPA-GGLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFPEGG---LPPNLKSLCIIECI 1256 (1287)
Q Consensus 1184 ~n~~~~~~~~-~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~~l~~~~~~~---~~~~L~~L~i~~~~ 1256 (1287)
+|.+....+. ...+++|+.|++++|.+....+..|..+++|+.|++++|.+ +.++... .+++|+.+++.++|
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI-TSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC-CBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC-CCCCHHHHCCCCCCCCEEECCCCC
T ss_conf 9978877977734666752238999977767976837898888898999968-705966830114665779831897
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=363.59 Aligned_cols=309 Identities=20% Similarity=0.323 Sum_probs=243.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCC-CCCC-CEEEEEEECCCCC--HHHH
Q ss_conf 8830001455999999983275568998199999927998099999998245222-2444-2159999558879--8999
Q 000782 165 DDRIYGREEDADKLIDFLLKDVEATDDGMCVIPLVGMGGVGKTTLAQVVYKDEKV-NDHF-ELKAWAFVSDEFD--LVKV 240 (1287)
Q Consensus 165 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~ 240 (1287)
++.||||++++++|.+.|... .++.++|+|+||||+||||||++++++.+. ..+| +.++|+++++... ....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCEECCHHHHHHHHHHHHHHC----CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 864125799999999998613----5887779999189888889999986075678862788179999788572679999
Q ss_pred HHHHHHHCCCCCC----CCCCHHHHHHHHHHHCCCC--EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 9999998068889----9899478999999872997--199998099989933476720247889999489997486126
Q 000782 241 TKAILESLGESCG----HITQLEPLQSALKRKLTLK--RYLLVLDDLWGENYNEWEVLQLPFRGGAHGSKIIVTTRSENV 314 (1287)
Q Consensus 241 ~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~~ 314 (1287)
++.++..+..... .....+.+...++.++.++ |+||||||+|+. ..|..+ .+|++||||||++.+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECCCHHH
T ss_conf 99999986553033347887778999999999735678789999567997--788763-------689789999277899
Q ss_pred HHH-HCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 767-36848198469-9956489999999708999999951568889998622896348999986613899976999987
Q 000782 315 AQI-VGTVPVFHLQE-LSDNDCWSLFAQHAFSKLNPEARPSLESIGKEIAKKCKGLPLAAKALGGLLRSKSNVDEWQHIL 392 (1287)
Q Consensus 315 ~~~-~~~~~~~~l~~-L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l 392 (1287)
+.. +.....+.+++ |+.++|+++|...++... +..++.+++|+++|+|+||||+++|++++.+. ..|...+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l 342 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYL 342 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH-----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHH
T ss_conf 8763488437982588887889999998657981-----34838899999984997799999999862480--5799999
Q ss_pred CCC---CCC-CCC----CCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 112---447-999----888801689961138997824475353145899522257799999981864367878873565
Q 000782 393 NSE---VWE-LPD----EKTGILPGLALSYHHLPSHLKPCFAYCAIFPKGYEFEANDLVRLWMAEGLMYEPRRNMQNEDV 464 (1287)
Q Consensus 393 ~~~---~~~-~~~----~~~~i~~~l~~sy~~L~~~~k~~~~~~a~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~ 464 (1287)
+.. .+. +.. ....+..++.+||+.|+++.|.||+|||+||+++.|+++.++.+|.++ ++.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~ 410 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEE 410 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------HHH
T ss_conf 99865044303465564467799999989986799999999972813799751899999885898------------889
Q ss_pred HHHHHHHHHHCCCCEECCC-CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7579999860774000378-8432100368999997530351
Q 000782 465 GSHYFHDLLSRSLFQRSSR-NISRFIMHDLINDLAQFAAGER 505 (1287)
Q Consensus 465 ~~~~l~~L~~~~Ll~~~~~-~~~~~~mHdli~~~~~~~~~~~ 505 (1287)
++.++++|++++|++.... ...+|+|||+||+|++..+.++
T Consensus 411 ~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 999999997446338963798118996689999987450678
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=351.46 Aligned_cols=512 Identities=15% Similarity=0.128 Sum_probs=311.5
Q ss_pred CCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 500999347898545-93426988655673478878645-5223226676487606866642168898999875189844
Q 000782 575 RLRVLSLSHYEIVEL-PDLIGDLKHLRYLDLSNTSIKSL-PESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIR 652 (1287)
Q Consensus 575 ~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 652 (1287)
.+++|+|++|.+..+ |..|.++++|++|+|++|.+..+ |..|.++++|++|++++|.+....|..|+.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 97555478-67789888982595120778876821321321477941891446889901465515887778880899742
Q 000782 653 GCNLQQLP-PHMGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNKLELQWS 731 (1287)
Q Consensus 653 ~n~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 731 (1287)
+|.+..++ ..++.+++|++|..
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L--------------------------------------------------------- 136 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYL--------------------------------------------------------- 136 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEEC---------------------------------------------------------
T ss_pred CCCCCCCCCCHHCCCCCCCEEEC---------------------------------------------------------
T ss_conf 26766578101223782238988---------------------------------------------------------
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCCCEEEEEEECCCCCCCCCC-CCCCCCCC--CEEEC
Q ss_conf 8999985488840178888977379942399999--9797999999710998704789998999-89866665--20002
Q 000782 732 SGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKF--PRWTGDPSYSNLVFLSLINCRNCTYLPP-LGQLPSLK--NLIIE 806 (1287)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~l~~-l~~l~~L~--~L~L~ 806 (1287)
.++....+ |.+. .+++|+.|++++|.+....+. +..+++|+ .|+++
T Consensus 137 --------------------------~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 137 --------------------------GSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp --------------------------CSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred --------------------------CCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECC
T ss_conf --------------------------79834114765456---8765687776568445549656332215640389667
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC--CEEEE
Q ss_conf 4766048497433688434445654236644689888743479998788623684337988723489878876--78898
Q 000782 807 GMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLVSL--KTLEI 884 (1287)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L--~~L~~ 884 (1287)
+|.+....+. .....+|+.|++++|..+. .....+.++ ..+..
T Consensus 188 ~n~l~~~~~~----------------------------------~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 188 GNDIAGIEPG----------------------------------AFDSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWL 232 (606)
T ss_dssp TCCCCEECTT----------------------------------TTTTCEEEEEECTTCSCHH-HHHHHTTTCEEEEEEC
T ss_pred CCCCCCCCHH----------------------------------HHHHCCCCCCCCCCCHHHH-HHHHHCCCCCHHHEEC
T ss_conf 9814754866----------------------------------7300100135567726677-7765133564422002
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCC--CCCCEEEECCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 1578866569998620456603421335310245--86423542022443334043311678755037504552000001
Q 000782 885 LNCRELSWIPCLPQIQNLILEECGQVILESIVDL--TSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLVNCDELLVLSN 962 (1287)
Q Consensus 885 l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 962 (1287)
..+...... .... ..+..+ .+|+.+++++| .+..++...+..+++|+.|++++|... .++.
T Consensus 233 ~~~~~~~~~------------~i~~---~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 233 GTFEDMDDE------------DISP---AVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp CCCTTSCCC------------CCCG---GGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHHCCCCCC------------CCCH---HHHCHHHCCCEEEEEEECC-CCCCCCHHHHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 011026412------------2686---6743032075059994457-658557777445667888956288267-7782
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCC--C-CC
Q ss_conf 113444663331100125543665211266867773789605358687875-4689999893887349998866--8-76
Q 000782 963 QFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPD-GLHSLKSLNTLKIINCPSLAAL--P-EI 1038 (1287)
Q Consensus 963 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~--~-~~ 1038 (1287)
. +..+++|+.|++++|.+....+..+..++ .|++|++++|.....++. .+..+++|+.|++++|.+.... + .+
T Consensus 296 ~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 296 G--LVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp S--CCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred H--HCCCCCCCEEECCCCCCCCCCHHHHHCCC-CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHC
T ss_conf 1--41654688897716876867602330157-68988898997444346245506675898878899666456752210
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 676876667724576523457775668898625798769999875789--999998458985089998757878677888
Q 000782 1039 DASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPD--GELPLTLQHLKISNCPNLNFLPAGLLHKNT 1116 (1287)
Q Consensus 1039 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~ 1116 (1287)
..+++|+.|++++|.+....+..+..+. +|+.|++++|......+. ....++|+.|++++|..... +...+..++
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 449 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECP--QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLP 449 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCT--TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCC--CCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CHHHHHCCC
T ss_conf 5678889898989967757888734774--5776878888677756521241765588898989855776-877873788
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-C
Q ss_conf 764389627668764543466676565799998898635478137998656534688888663872059994236999-9
Q 000782 1117 CLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLVSFPAG-G 1195 (1287)
Q Consensus 1117 ~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~ 1195 (1287)
+|++|++++|.+++..... ...+..+++|+.|++++|......+..+..+++|+.|++++|.+....+.. .
T Consensus 450 ~L~~L~L~~n~l~~~~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQK--------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TCCEEECTTCBCGGGEECS--------SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred CCCEEECCCCCCCCCCCCC--------CHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 7888989899888543454--------31240488766887999966706864632656788898989806868966847
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 99994669772688887674237999986807451688886889
Q 000782 1196 LPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFP 1239 (1287)
Q Consensus 1196 ~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~~l~~~~ 1239 (1287)
.+++| .|++++|.+....|..+..+++|+.|++++|++....+
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 56651-89876894142687662567787889677998616677
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=348.80 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=53.6
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99934789854593426988655673478878645-52232266764876068666421688989998751898449755
Q 000782 578 VLSLSHYEIVELPDLIGDLKHLRYLDLSNTSIKSL-PESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRFLDIRGCNL 656 (1287)
Q Consensus 578 ~L~L~~~~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~l 656 (1287)
.++.++..+..+|..+.. ++++|++++|.++.+ |.+|.++++|++|++++|.+....|..|..+++|++|++++|.+
T Consensus 16 ~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 377777980628677898--675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCC-CCCCCCCCCCCCC
Q ss_conf 547-8677898889825
Q 000782 657 QQL-PPHMGGLKNLRTL 672 (1287)
Q Consensus 657 ~~l-p~~i~~L~~L~~L 672 (1287)
..+ |..++.+++|++|
T Consensus 94 ~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 94 IFMAETALSGPKALKHL 110 (606)
T ss_dssp SEECTTTTSSCTTCCEE
T ss_pred CCCCHHHHCCCCCCCEE
T ss_conf 54586552344215376
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=345.81 Aligned_cols=521 Identities=18% Similarity=0.114 Sum_probs=312.6
Q ss_pred CCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC-CCCC-CHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 899500999347898545-9342698865567347887-8645-522322667648760686664216889899987518
Q 000782 572 NFSRLRVLSLSHYEIVEL-PDLIGDLKHLRYLDLSNTS-IKSL-PESIAALYNLQTLILYSCRYLIQLPKHMGDLFNLRF 648 (1287)
Q Consensus 572 ~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~Ls~n~-i~~l-p~~i~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 648 (1287)
..+++++|+|++|.+..+ |..|.++.+|++|+|++|. +..+ |.+|.++++|++|+|++|.+....|..|..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EEECCCCCCC-CCCC--CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCE
Q ss_conf 9844975554-7867--789888982595120778876821321321477941891446889901465515887778880
Q 000782 649 LDIRGCNLQQ-LPPH--MGGLKNLRTLPSFLVSKDGGCGIRELKDLSKLKGDLSIIGLENVDKDTDAEDANLKDKKYLNK 725 (1287)
Q Consensus 649 L~l~~n~l~~-lp~~--i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 725 (1287)
|++++|.+.. +|.. +..+++|++|++.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls-------------------------------------------------- 131 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLS-------------------------------------------------- 131 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEE--------------------------------------------------
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECC--------------------------------------------------
T ss_conf 017678897340467645566799988898--------------------------------------------------
Q ss_pred EEEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCC--CCCCCCCCCCEEEEEEECCCCCCCCCC-CCCC--CCC
Q ss_conf 89974289999854888401788889773799423999999--797999999710998704789998999-8986--666
Q 000782 726 LELQWSSGHDGMIDEDVLEALQPHWNLKELSIKQYSGAKFP--RWTGDPSYSNLVFLSLINCRNCTYLPP-LGQL--PSL 800 (1287)
Q Consensus 726 L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~l~~-l~~l--~~L 800 (1287)
++....++ ..+. .+++|+.|++++|.+.+..+. +..+ ++|
T Consensus 132 ---------------------------------~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 132 ---------------------------------KNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp ---------------------------------SCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred ---------------------------------CCCCCCCCCCHHHH--HCCCCCEEECCCCCCCEECHHHCCCCCCCCC
T ss_conf ---------------------------------78642325665576--3889898989898477667887535567750
Q ss_pred CCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC---
Q ss_conf 52000247660484974336884344456542366446898887434799987886236843379887234898788---
Q 000782 801 KNLIIEGMDAISRVGPEFYADSWLSIKSFQSLEALKFKDLPVWEEWISPDVGEFPHLHELCIENCPKFSKEIPRSLV--- 877 (1287)
Q Consensus 801 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~--- 877 (1287)
+.|++++|.+....+..+. .+++ .+ ....|+.|++++ +.+.+..+..+.
T Consensus 177 ~~L~L~~n~l~~~~~~~~~--------~~~~------------------~~-~~~~L~~L~Ls~-n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWG--------KCMN------------------PF-RNMVLEILDVSG-NGWTVDITGNFSNAI 228 (844)
T ss_dssp CCCEECCSBSCCCCCCCCC--------SSSC------------------TT-TTCCBSEEBCSS-CCSSTTTTSGGGGTS
T ss_pred CEEECCCCCCCCCCCCCHH--------HCCC------------------CC-CCCCEEEEECCC-CCCCHHHHHHHHHHC
T ss_conf 3578978866655455332--------2377------------------22-357400796578-868656778887642
Q ss_pred ---CCCEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCC--CCCCCEEEECCCCCCCCCHHHHHCCCCCCCCEEEE
Q ss_conf ---7678898157886656999862045660342133531024--58642354202244333404331167875503750
Q 000782 878 ---SLKTLEILNCRELSWIPCLPQIQNLILEECGQVILESIVD--LTSLVKLRLYKILSLRCLASEFFHRLTVLHDLQLV 952 (1287)
Q Consensus 878 ---~L~~L~~l~~~~~~~~~~lp~L~~L~l~~~~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 952 (1287)
.+..+... .+....... ...........+.. .++|+.|++++| .+..+....+..+++|+.|+++
T Consensus 229 ~~~~l~~L~l~---~~~~~~~~~------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 229 SKSQAFSLILA---HHIMGAGFG------FHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp CSCCBSEEECC---SSCCBCSSS------CSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEE
T ss_pred CCCCCCCEECC---CCCCCCCCC------CCCCCCCCHHHHHCCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCEEECC
T ss_conf 74410011212---122346644------4566889855652555478618989799-4551586345258999999897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 45520000011134446633311001255436652112668677737896053586878754689999893887349998
Q 000782 953 NCDELLVLSNQFGLLRNSSLRRLAIWKCSISLLWPEEGHALPDLLECLEIGHCDNLHKLPDGLHSLKSLNTLKIINCPSL 1032 (1287)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 1032 (1287)
+|......+..+ ..+++|+.|++++|.+....+..+..++ .|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 299 ~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 299 YNKINKIADEAF--YGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCCCCEECTTTT--TTCSSCCEEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCCCHHHH--CCCCCCCEEECCCCCCCCCCHHHHCCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 981898796883--6888999898989978851878846899-9998989899877628666137888999889899778
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC---CCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 866876676876667724576523457775668898625798769999875789---99999845898508999875787
Q 000782 1033 AALPEIDASSSLRYLQIQQCEALRSLPAGLTCNKNLSLEFFELDGCSSLISFPD---GELPLTLQHLKISNCPNLNFLPA 1109 (1287)
Q Consensus 1033 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~ls~~~~l~~~~~ 1109 (1287)
. +..+++|+.|++++|++... |.. ...++.++++++.- ...+. ....++|+.|++++|......+.
T Consensus 376 ~----i~~~~~L~~L~l~~N~l~~l-~~~-----~~~l~~L~ls~N~l-~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 444 (844)
T 3j0a_A 376 T----IHFIPSIPDIFLSGNKLVTL-PKI-----NLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFSSCSGD 444 (844)
T ss_dssp C----CSSCCSCSEEEEESCCCCCC-CCC-----CTTCCEEECCSCCC-CSSTTHHHHTTCTTCCEEEEESCCCCCCCSS
T ss_pred C----CCCCCCCCHHCCCCCCCCCC-CCC-----CCCCCEEECCCCCC-CCCCHHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 6----16889823200589972314-554-----55431221456753-4575566651277666666778712555543
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 86778887643896276687645434666765657999988986354781379986565346888886638720599942
Q 000782 1110 GLLHKNTCLECLQISGCSLNSFPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPDDLYNFICLDKLLISNCPKLV 1189 (1287)
Q Consensus 1110 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 1189 (1287)
..+..+++|+.|++++|.++.++... .....+..+++|+.|++++|......+..+.++++|+.|++++|.+..
T Consensus 445 ~~~~~~~~L~~L~Ls~N~l~~~~~~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 445 QTPSENPSLEQLFLGENMLQLAWETE------LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp SSSCSCTTCCBCEEESCCCSSSCCSC------CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC------CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCC
T ss_conf 33566873100247777364410135------535554475536577788985655395570450122156999997874
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 36999999994669772688887674237999986807451688886889
Q 000782 1190 SFPAGGLPPNLKSLSISDCENLVTLPNQMQSMTSLQDLTISNCIHLESFP 1239 (1287)
Q Consensus 1190 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~~l~~~~ 1239 (1287)
..+. ...++|+.|++++|.+....|..+ ++|+.|++++|++....+
T Consensus 519 l~~~-~~~~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 519 LSHN-DLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCC-CCCSCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCHH-HHHCCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCC
T ss_conf 5710-110045588898884788896683---776889931997025366
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=345.43 Aligned_cols=137 Identities=18% Similarity=0.073 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 9845898508999875787867788876438962766876-454346667656579999889863547813799865653
Q 000782 1091 LTLQHLKISNCPNLNFLPAGLLHKNTCLECLQISGCSLNS-FPVICSSNLSSLSASSPKSSSRLKMLEICNCMDLISLPD 1169 (1287)
Q Consensus 1091 ~~L~~L~ls~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~ 1169 (1287)
++|+.|++++|......| ..+..+++|++|++++|.+++ +.+ ..+..+++|+.|++++|......+.
T Consensus 424 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLS-----------NVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp TTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEEC-----------SCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCHH-----------HHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 137889896897874335-5534778789898989837985467-----------7604578899898988857764865
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCC
Q ss_conf 4688888663872059994236999-9999946697726888876742379999-868074516888868899
Q 000782 1170 DLYNFICLDKLLISNCPKLVSFPAG-GLPPNLKSLSISDCENLVTLPNQMQSMT-SLQDLTISNCIHLESFPE 1240 (1287)
Q Consensus 1170 ~~~~~~~L~~L~ls~n~~~~~~~~~-~~~~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~ls~n~~l~~~~~ 1240 (1287)
.+..+++|+.|++++|++....|.. ..+++|+.|++++|.+. .+|..+..++ +|+.|++++|++....+.
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 6154646898989899578748777068876898889898376-66876752102174887628986647764
Done!