BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000783
(1287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 378/1299 (29%), Positives = 631/1299 (48%), Gaps = 90/1299 (6%)
Query: 2 AAVPVEEAIAA---LSTFSLEDEQPEVQGP-SVLVSTERGATASPIEYSDVNAYRLSLS- 56
A V +E+A++ L L D+QP ++ P S L+ T + D NA+ ++
Sbjct: 3 AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNT----NFEDRNAFVTGIAR 58
Query: 57 --EDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLE 114
E + +N +++EG+E A +LYT+RSC +A+PQ+ + + ++ ++Y +T +VL+ E
Sbjct: 59 YIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPE 118
Query: 115 MSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAK 174
+++L +Q +A + +++R ERR + + +L ++ K +++ LD LKN K
Sbjct: 119 VTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMK 178
Query: 175 ASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVED 234
S+ ND S YKR Q + D S++E +L +FL+ I +L ++ ++ E+
Sbjct: 179 CSVKNDHSAYKRA-AQFLRKMADPQSIQES-QNLSMFLANHNKITQSLQQQLEVISGYEE 236
Query: 235 ILQVLIVFAVESLELDFALLFPERHIXXXXXXXXXXXATSSEKDSESL--YKRVKINRLI 292
+L ++ V+ E L E+H+ S + L KR+ ++++
Sbjct: 237 LLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKID 296
Query: 293 NIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHY 352
FK V+P F D+ + A +K + Y + S T + +P Y
Sbjct: 297 KYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGSSPQ-------------Y 343
Query: 353 LIANHIGGIRAEHDDFTIRFASAMNQLLLLKS----TDNADIEWCKEVKGNMYDMVIEGF 408
I + IR +H F A N ++ S D E+ K ++D+ ++G
Sbjct: 344 NICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRK-----LFDLALQGL 398
Query: 409 QLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELV 468
QLLS+W+A + E +WK P + S +YE+ RYNY++EE+ ALVE++
Sbjct: 399 QLLSQWSAHVMEVYSWKLVHPTDKY---SNKDCPDSAEEYERATRYNYTSEEKFALVEVI 455
Query: 469 SYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSRILSDMR 527
+ IK + +M R +++ A+ T++A +QDF Q TL LR +KKK+ + +L +R
Sbjct: 456 AMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIR 515
Query: 528 TLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPR-AVAPTAAQVHCLQFLIYEVVSGGN 586
DW + P + +S +I PR AV P++ Q++ ++ ++ +++ +
Sbjct: 516 KTVCDWETGHE-PFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS 574
Query: 587 LRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLE 646
K G I E ESFFY H+++++ T+ DL LWFREF+LE
Sbjct: 575 GSKKTLRSSLEGPTILDIEKFHRESFFYT-----HLINFSETLQQCCDLSQLWFREFFLE 629
Query: 647 SS--RVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYD 704
+ R IQFPIE S+PW+L DH+LE++ A ++E V+ D+YNDSA AL ++FLYD
Sbjct: 630 LTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYD 689
Query: 705 EIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDN-GEKYSVQPM-RLSAL 762
EIEAEV+ CFD FV +L + IF YYK A S LLD N G + P R L
Sbjct: 690 EIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETL 749
Query: 763 FKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTH 822
K V+LLGRSI+L LI +R++ ++LE RFES+DL +IVEL+ LL+I + TH
Sbjct: 750 LKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTH 809
Query: 823 ELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRS 882
+LLS+ L++D F + E N+S + R+ ++ E+ DFLPN+ +T RF+R+
Sbjct: 810 KLLSRYLTLDGFDAMFREANHNVS--APYGRITLHVFWELNYDFLPNYCYNGSTNRFVRT 867
Query: 883 SKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLP 942
Q+ P A+P + G++ LN A+ S + F G PH I RLLG + +
Sbjct: 868 VLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIA 927
Query: 943 WLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL-NWGTKS 1000
++ LL + + + T+ + L E +PK L + G G + QL + +
Sbjct: 928 VVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYA 987
Query: 1001 ELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGD 1060
ELK ++E+G+ + + L++ L + + AP+ LP + D
Sbjct: 988 ELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKM 1047
Query: 1061 SPVVNLFKS-ATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-SVLEYALAFTS 1118
+ + + ++ G P + A DLL K + G S+ E L
Sbjct: 1048 KRLESKYAPLHLVPLIERLGTPQQIAI------AREGDLLTKERLCCGLSMFEVILTRIR 1101
Query: 1119 AALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAW 1177
+ LD W P G + + +F+R++S +Q Y + GD + W
Sbjct: 1102 SFLDD--PIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHW 1159
Query: 1178 GGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQ-----GWEALIEAM 1232
GC II LLGQQ F + DF Y +L V QKH + + ++E +
Sbjct: 1160 AGCMIIVLLGQQRRFAVLDFCYHLLKV-----------QKHDGKDEIIKNVPLKKMVERI 1208
Query: 1233 KKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIK 1271
+K + LN+ + ++L DK + G P+ ++
Sbjct: 1209 RKFQILNDEIITIL-------DKYLKSGDGEGTPVEHVR 1240
>pdb|2XBT|A Chain A, Structure Of A Scaffoldin Carbohydrate-Binding Module
Family 3b From The Cellulosome Of Bacteroides
Cellulosolvens: Structural Diversity And Implications
For Carbohydrate Binding
Length = 160
Score = 33.9 bits (76), Expect = 0.61, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 439 NEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQ 498
N S++Y + +RY Y++++ KAL Y+ +IGS + L +HA+
Sbjct: 34 NTGSSTYDLSKITIRYFYTSDDDKALTYYSDYV-SIGSASATFNNL------SPVHAKAN 86
Query: 499 DFVQNTLAT-MLRTTFRKKKDLSRILSDMRTLSADWM-ANNSRPEAEQQSMHHVGEESRG 556
+++ LA+ L + S + R ADW + S + SM GE
Sbjct: 87 KYIEIKLASGTLGAAGAQWPSQSEVTIQGRVAKADWTNVDQSNDYSYPGSMSQFGENKLV 146
Query: 557 NIFYPRAV 564
++Y A+
Sbjct: 147 AVYYNGAL 154
>pdb|1TZN|A Chain A, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|B Chain B, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|C Chain C, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|D Chain D, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|E Chain E, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|F Chain F, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|G Chain G, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|H Chain H, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|I Chain I, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|J Chain J, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|K Chain K, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|L Chain L, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|M Chain M, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|O Chain O, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZO|A Chain A, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|B Chain B, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|C Chain C, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|D Chain D, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|E Chain E, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|F Chain F, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|G Chain G, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|H Chain H, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|I Chain I, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|J Chain J, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|K Chain K, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|L Chain L, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|M Chain M, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|O Chain O, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
Length = 562
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 6 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 60
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 61 SDFEKVTGRIDKNVSPEARHPLV 83
>pdb|3KWV|A Chain A, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|B Chain B, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|D Chain D, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|E Chain E, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 548
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 12 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 66
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 67 SDFEKVTGRIDKNVSPEARHPLV 89
>pdb|3HVD|A Chain A, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|B Chain B, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|C Chain C, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|D Chain D, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|E Chain E, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|F Chain F, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|G Chain G, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|H Chain H, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
Length = 548
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 12 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 66
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 67 SDFEKVTGRIDKNVSPEARHPLV 89
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 180 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 234
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 235 SDFEKVTGRIDKNVSPEARHPLV 257
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARHPLV 256
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARHPLV 256
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARHPLV 256
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARHPLV 256
>pdb|3TEW|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.45-A Resolution
pdb|3TEX|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.7-A Resolution
Length = 715
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARHPLV 256
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIXEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARXPLV 256
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 386 DNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASY 445
DN I EV+G D V LS W + I E+ K YK + P + + AS Y
Sbjct: 179 DNDGIPDSLEVEGYTVD-VKNKRTFLSPWISNIHEK---KGLTKYKSS-PEKWSTASDPY 233
Query: 446 SDYEKV---VRYNYSAEERKALV 465
SD+EKV + N S E R LV
Sbjct: 234 SDFEKVTGRIDKNVSPEARHPLV 256
>pdb|1B4J|H Chain H, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 220
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1041 WLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIV 1075
W+G + +DG++ Y+QD D + + KS++ A +
Sbjct: 47 WIGRIDPSDGEVHYNQDFKDKATLTVDKSSSTAYI 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,860,669
Number of Sequences: 62578
Number of extensions: 1423723
Number of successful extensions: 3246
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3234
Number of HSP's gapped (non-prelim): 16
length of query: 1287
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1177
effective length of database: 8,089,757
effective search space: 9521643989
effective search space used: 9521643989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)