Query 000783
Match_columns 1287
No_of_seqs 105 out of 127
Neff 4.7
Searched_HMMs 46136
Date Mon Apr 1 23:31:11 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03099 PIR Protein PIR; Prov 100.0 0E+00 0E+00 3505.2 109.8 1226 3-1285 2-1232(1232)
2 KOG3534 p53 inducible protein 100.0 0E+00 0E+00 3322.4 77.9 1217 2-1285 3-1252(1253)
3 PF05994 FragX_IP: Cytoplasmic 100.0 3E-246 6E-251 2219.6 52.4 804 397-1248 3-820 (820)
4 PF07159 DUF1394: Protein of u 100.0 2E-62 4.2E-67 545.6 18.3 271 41-322 3-293 (303)
5 KOG3951 Uncharacterized conser 100.0 4.4E-54 9.6E-59 456.3 12.7 236 56-299 29-288 (321)
6 PF14745 WASH-7_N: WASH comple 98.8 6.4E-05 1.4E-09 93.0 40.6 508 23-635 26-566 (567)
7 PF09735 Nckap1: Membrane-asso 98.0 0.17 3.7E-06 67.5 46.1 811 58-1030 3-922 (1116)
8 PF14744 WASH-7_mid: WASH comp 90.0 20 0.00043 42.8 18.8 280 678-1027 25-329 (350)
9 KOG3534 p53 inducible protein 53.4 16 0.00036 46.4 4.7 100 70-169 131-230 (1253)
10 PRK02866 cyanate hydratase; Va 50.7 1.9 4E-05 45.6 -3.2 45 1145-1209 86-130 (147)
11 TIGR00673 cynS cyanate hydrata 50.4 1.8 4E-05 45.7 -3.3 45 1145-1209 89-133 (150)
12 COG4741 Predicted secreted end 49.0 9.4 0.0002 40.6 1.6 32 850-886 87-118 (175)
13 COG1513 CynS Cyanate lyase [In 42.1 3.8 8.2E-05 42.4 -2.4 48 1144-1211 88-135 (151)
14 cd00559 Cyanase_C Cyanase C-te 37.4 3.1 6.8E-05 38.6 -3.4 44 1145-1208 8-51 (69)
15 KOG1917 Membrane-associated he 33.6 2.3E+02 0.005 38.0 10.3 99 922-1030 826-924 (1125)
16 PHA02888 hypothetical protein; 33.0 70 0.0015 30.7 4.4 42 565-612 4-47 (96)
17 PF02560 Cyanate_lyase: Cyanat 30.6 3.7 8E-05 38.5 -4.1 45 1145-1209 12-56 (73)
18 PF10107 Endonuc_Holl: Endonuc 30.6 25 0.00054 37.6 1.3 33 850-887 74-106 (156)
19 PF08146 BP28CT: BP28CT (NUC21 30.4 33 0.00071 36.4 2.1 35 703-737 34-72 (153)
20 COG1722 XseB Exonuclease VII s 20.2 1.9E+02 0.0042 28.0 5.0 39 789-827 15-56 (81)
No 1
>PLN03099 PIR Protein PIR; Provisional
Probab=100.00 E-value=0 Score=3505.17 Aligned_cols=1226 Identities=77% Similarity=1.203 Sum_probs=1193.9
Q ss_pred ccCHHHHHhhcccCCCCCCCccccCCcceEeeccCCCCCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000783 3 AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTY 82 (1287)
Q Consensus 3 ~v~~~~av~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~tnf~Dr~a~~t~~~eE~e~~~~ln~vLeeg~~~l~~LytY 82 (1287)
|||++|||++|++||||||||||||+|++|.-+|+++||||||+||+||+||++||++++++||++|+||++++++||||
T Consensus 2 ~~~~~~av~~L~~~~l~d~QP~Ie~~~~~i~~~~y~~~~~tnf~D~~Ay~~~~aEea~~~~~ln~ll~eG~e~a~~LYT~ 81 (1232)
T PLN03099 2 AVPVEEAVAALSTFSLEDEQPDVQGLAVTLSAGRAATESPIDYSDVAAYQLSLSEDTKAINQLNTLIQEGKEMVSILYTY 81 (1232)
T ss_pred CCcHHHHHHHHhcCCCCCCCccccCCCcceecccccccCCCcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 79999999999999999999999999999995555789999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHH
Q 000783 83 RSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLD 162 (1287)
Q Consensus 83 RscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~~~se~~L~~La~iLd 162 (1287)
|||||||||+++|+|||++||||+|++||+|||+||++||+||++|+.+||++|++|||+|||+++|+|+||++|+++||
T Consensus 82 RsCsrAlPq~k~~~q~nr~eiYe~t~eVLepEi~KL~~fm~fq~~Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~ln 161 (1232)
T PLN03099 82 RSCVKALPQLPESMKHSQADLYLETYQVLDLEIGRLREIQRWQSSAASKLAADMQRFSRPERRINGPTVTHMWSMLKLLD 161 (1232)
T ss_pred HHHHhhcCCCCccccccHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCCCCcchhHHhhhHhhhhhccCCchhHHHHhhhcchhccchhhHHHHHHHhhcccCChHhHHHHHHHH
Q 000783 163 VLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF 242 (1287)
Q Consensus 163 f~l~lD~LK~~k~sIqNDFS~YRRa~sr~~~~~~d~~~v~~E~~~LSlFlA~~~pil~~L~~al~~i~~~edvL~t~anv 242 (1287)
|+++||+|||||+||+||||+|||||.++.++|+|++++++|+++|||||||+|.|+.+|++++..|+||||+|++++|+
T Consensus 162 mfa~LD~LKNmKAsi~NDfS~ykRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~gyediL~~ivn~ 241 (1232)
T PLN03099 162 VLLQLDHLKNAKASIPNDFSWYKRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVNNVEDILQVLIVF 241 (1232)
T ss_pred HHHHHHHHhhhhccccccHHHHHHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999999999999888888999999997789999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCccchhhheeeceeeeeecCCCCchhhHHhHhchhHHHhhhhcCCccccCCCcccCHHHHHhhhchhh
Q 000783 243 AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYF 322 (1287)
Q Consensus 243 C~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~Kri~l~r~~kifK~~pVVPlfgDm~i~~~~~~k~~~~~~ 322 (1287)
|++|+|+++|++|+|||+|||||+|+++|+|++++++...+|||||+|++|||
T Consensus 242 C~~~yE~~~yl~p~EKH~LlrVm~f~l~L~ds~~k~~~~~~Kri~i~rldkiF--------------------------- 294 (1232)
T PLN03099 242 CLESLESDFVLLYSERHILLRVLPVLVVLATSSEKEGESLFKRIKINRLINIF--------------------------- 294 (1232)
T ss_pred HHHHhccCceecCccceeEEEeeeeeEEEecccccchHHHhhhccHHHHHHHh---------------------------
Confidence 99999999999999999999999999999998777766678999999999998
Q ss_pred hhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhhhHhhhhhhHH
Q 000783 323 QKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYD 402 (1287)
Q Consensus 323 ~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1287)
++||+|++||++||+||++|++|||+++|+++++++.+++|.++++.+++++|+
T Consensus 295 --------------------------~~~y~I~~~m~~iR~dh~~f~~~~A~~~N~~~~~~~~~~~d~e~~~~~k~~~~d 348 (1232)
T PLN03099 295 --------------------------QREYLIVNHMGAIRAEHDDFCIRFASAMNQLQLLKSADGVDTAWSREIKENMYD 348 (1232)
T ss_pred --------------------------cchHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCccchhhhhhhhHHHHH
Confidence 247899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000783 403 MVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSD 482 (1287)
Q Consensus 403 l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~~lL~~~e 482 (1287)
+||+||||||+||++|||||||||+||++++. .|++||+++++||||||||||+|||+||||+||||||++++|.++|
T Consensus 349 ~~l~GlqLLS~WT~~V~Eq~aWKl~~P~~~~~--~n~e~p~~~eeYEravRyNYt~eEr~aLvelIsmIK~l~~ll~~~e 426 (1232)
T PLN03099 349 VVVEGFQLLSEWTGRIWEQCAWKFSRPAKDAT--PDPERSGSVTDYEKVVRCNYTAEERKALVELIGYIKGVGSMLERCD 426 (1232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--cCCCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996555 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCCCccccCC
Q 000783 483 TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPR 562 (1287)
Q Consensus 483 ~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~~~~~~~r 562 (1287)
++++++||++||+++|||||++|++|||+++||||++++||++||++++||++|.+|.++++.++ ++++...+++++||
T Consensus 427 t~i~~ai~~~I~~~lQdFvQ~~L~~~Lr~~~kkKk~l~~il~~iR~~~~DW~~g~~p~~~~~~~~-~~~~~~~~~~i~pr 505 (1232)
T PLN03099 427 TLVADALWETIHAQVQDFVQNKLATMLRTTFRKKKELSRILSDMRTIAADWMANTRPEEKMPSRQ-RENDESRPNFFYPR 505 (1232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCcccchhhcC-CCCCCCCCcccCcC
Confidence 99999999999999999999999999999999999999999999999999999998888876443 33344567889999
Q ss_pred CCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHHHhhccccchhhhh
Q 000783 563 AVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFRE 642 (1287)
Q Consensus 563 ~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL~~~~DLS~LWfRE 642 (1287)
+||||+|||||+|+||+++++||+.+|++|+||.++++++++++++|++||++|+||+|||||++||++|||||||||||
T Consensus 506 ~v~psstQL~~lr~~l~slis~~s~kk~~g~F~~s~~~i~~~~i~~ie~Fl~~S~~f~~LL~~s~tL~~~~Dls~LWFRE 585 (1232)
T PLN03099 506 PVAPTAAQLHCLQFLIHELVSGGSPKKPGGFFGNNGSEIPVNDLKQLETFFNKLAFFPHILDYRATIGHLTDLGFLWFRE 585 (1232)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCcccccccccccccCCChHHHHHHHHHHHHhhhHHHHhchHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCeeeccCcCcchHHHHHHHhhcCCcchhhhhcccccccchHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHH
Q 000783 643 FYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLC 722 (1287)
Q Consensus 643 fyLEl~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYDEIEAEvnLCFDqlv~kLS 722 (1287)
||||++++||||||||||||||||||++++|+|+|+||||||||||||++||++||||||||||||||||||||||||||
T Consensus 586 fyLE~~~~iQFPIe~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDqlv~kls 665 (1232)
T PLN03099 586 FYLETSRVIQFPIECSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQLVSKLS 665 (1232)
T ss_pred HHHhhcceeecchhcCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCccccccccCCCCcccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 000783 723 ETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFES 802 (1287)
Q Consensus 723 d~iF~~yK~~Aas~lLd~~f~~~~~~~~~~~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~ai~rfEs 802 (1287)
|+||+|||++|+|++||++|+++|++|.++++||+||++|||||||+||||+||||+||+||||++|+++||.||+||||
T Consensus 666 d~iF~~yK~~A~s~~Ld~~f~~~~~~~~~~~~~p~Ry~~LlqQr~v~lLGr~IDL~~LItQRlN~~~~~~Le~~i~rfEs 745 (1232)
T PLN03099 666 ESIFTYYKSRAASKLLDPSFLAAVDNGEKFSVQPKRYDALFKMRRVKILGRTIDLASLIAQRMNKIFRENLDFLFERFES 745 (1232)
T ss_pred HHHHHHHHHHHHHHhhCHHHHhhhhccccCCCChHHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccccccccccCcccccC
Q 000783 803 QDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRS 882 (1287)
Q Consensus 803 ~dl~~iveLe~ll~v~R~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs 882 (1287)
+|||+||||+++|||||+||+||||+|+|||||+||+||||++|++|++||||+||||||++||+||||||++||||||+
T Consensus 746 ~dL~~ivele~ll~ilr~TH~LLse~L~LdpFd~m~~Ean~~~s~~S~~sri~~hv~~el~~Df~PNy~~n~~T~RFVrs 825 (1232)
T PLN03099 746 QDLCSVVELQRLVEILRLTHELLSEHLSIDPFSLMLGEMQENISLVSFSSRLASQIWSEMQNDFLPNFILCNTTQRFVRS 825 (1232)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHhccCCccchhhHHHHHHHHHHhccccccceecCccchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHHH
Q 000783 883 SKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPL 962 (1287)
Q Consensus 883 ~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~~ 962 (1287)
+.+++++++|+++|+++|+|+||||+||+||++|+++|++|||.|||+|||||||||||||||+||||+++++|+++.||
T Consensus 826 ~~~~~~~~~Re~~P~~~~~~~~Gtk~Ln~A~~~~~~ly~~f~G~pH~~ai~rLlG~~~la~vi~~lL~~i~~~i~~l~~~ 905 (1232)
T PLN03099 826 SKVPQRPTRRPSVPSAKPSFLCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKITTLEPM 905 (1232)
T ss_pred ccCcccccccCCCCCCCcceeecchHHHHHHHHHHHHHhcccCcHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcccCccCCCccchhHHHHHHHHhccccccchHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhHHHHhhcccc
Q 000783 963 IMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWL 1042 (1287)
Q Consensus 963 v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~~~dlk~~v~~~frElGN~i~~~~lle~aL~q~e~~d~~~aaPf~ 1042 (1287)
|++|+++|||+|+||++|||++||++||++||+|++.||||+||||+||||||+|+||+|||+||+|+|++||+|||||+
T Consensus 906 v~~L~~~mPk~~~Lp~~dyG~~g~~~~~~~qL~~~~~yelk~ev~q~fREiGn~i~f~~Lld~aL~qee~~~~~~aAPfl 985 (1232)
T PLN03099 906 IEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKYEGKSEVLRGLKEIGSLIFWMSLLDIAMREVETVQFMQVAPWL 985 (1232)
T ss_pred HHHHHHhCccccCCCccccCchHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999855999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhhhHHhhhhhhccccccHHHHHHHHHHHHHc
Q 000783 1043 GFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALD 1122 (1287)
Q Consensus 1043 gi~P~~~~~~~~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a~~~d~l~~~~l~~gs~f~~~L~~~~~~L~ 1122 (1287)
|++|+++||. ++++++|+|++++++++..+|+++|||++|.+|.+|.+||.+||+|||+||||||+||++|+|++++|+
T Consensus 986 gi~P~~~gq~-~~~~~~ys~~~~~~~~~~~~~v~~~~~~~~~~~~~~~kq~~~adlL~kerl~~GSvfe~~L~~~~~~L~ 1064 (1232)
T PLN03099 986 GLVPGKEGQL-QQADDNESPLVSLFKEATSAVVSSPGCLNPSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLAFTSAVLD 1064 (1232)
T ss_pred cCCCCCchhh-hhhhcccchHHHHHHHHhhhhhcCcccCCchhhcchhhhhhhhhHHHHhhcccccHHHHHHHHHHHHHh
Confidence 9999998876 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCeeeecccchHhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhh
Q 000783 1123 KYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1202 (1287)
Q Consensus 1123 ~~~~~W~g~p~ngv~~id~~~ef~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil 1202 (1287)
++|++|++||+||||+||||+||||||||||||||+|++++|+++||+|||||+|||||||+|||||+|||+||||||||
T Consensus 1065 ~~~~~W~~~P~nGvi~Id~~~eFhRlwSalQfv~c~p~~~~e~~~ee~fGDgl~WaGctii~lLgQq~rFe~lDF~yhiL 1144 (1232)
T PLN03099 1065 RHRSKWSAPPKTGFIDITTSKDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLDFIYHVL 1144 (1232)
T ss_pred cccCcccCCCCCCeEecccchHHHHHHHhhhheeeccCCCCcccHHHHhccccccccchHHhhhcchhhhhHHHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCC-----CCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhhccCCCCcccccCCCchh
Q 000783 1203 NVAEVEAISVP-----QSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVS 1277 (1287)
Q Consensus 1203 ~v~~~d~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~s 1277 (1287)
||+++|++|+. ++.++|+.|++|++||+||||||+|||||||+|++|||++|+.||+|||||+||||||||||||
T Consensus 1145 ~V~e~d~~~~~~~~~~~~~k~~~~~~~l~~~~e~~rr~r~LNnqVFs~L~~~~~~~d~~~~~~k~~g~~~~~~~~~~t~s 1224 (1232)
T PLN03099 1145 SVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCPLEDKLASMIKQSGAPVHRVKYPNTPS 1224 (1232)
T ss_pred HHHHHhcccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccCCCcceeeecCCChH
Confidence 99999999983 4556689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCC
Q 000783 1278 AFETLPQR 1285 (1287)
Q Consensus 1278 ~~~~~~~~ 1285 (1287)
+|+||||+
T Consensus 1225 ~~~~lp~~ 1232 (1232)
T PLN03099 1225 AFETLPQK 1232 (1232)
T ss_pred HHhccCCC
Confidence 99999986
No 2
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=100.00 E-value=0 Score=3322.36 Aligned_cols=1217 Identities=30% Similarity=0.529 Sum_probs=1163.8
Q ss_pred CccCHHHH---HhhcccCCCCCCCccccCCcceEeeccCCCCCCCccccccchhhcch---hHHHHHHHHHHHHHHHHHH
Q 000783 2 AAVPVEEA---IAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLS---EDTKALNQLNTLIQEGKEM 75 (1287)
Q Consensus 2 ~~v~~~~a---v~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~tnf~Dr~a~~t~~~---eE~e~~~~ln~vLeeg~~~ 75 (1287)
++|||.|| |.+|+++.+|||+||||+.+.+|.|. .+|+++|+++.||||||+ ||++.|+++|++|+||.++
T Consensus 3 ~~vt~~daisnv~~ldtl~~pdd~p~iea~~~~l~y~---~~f~~~fq~~~afvtgiaky~eeat~ha~~n~ml~eg~~h 79 (1253)
T KOG3534|consen 3 ANVTVDDAISNVNLLDTLAIPDDLPDIEARALPLLYR---NKFKNYFQIKLAFVTGIAKYSEEATRHAQFNDMLSEGLQH 79 (1253)
T ss_pred CceeHHhhhcchhhhhhccCcccccchhhcccccccC---CchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57999999 79999999999999999999999994 689999999999999997 9999999999999999999
Q ss_pred HHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCchHHHH
Q 000783 76 ASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLW 155 (1287)
Q Consensus 76 l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~~~se~~L~ 155 (1287)
+.++||||||||||||++||+|||++||||++++||.|||.||-+||+||++|+++||++++++||.|+|++++||+|++
T Consensus 80 a~~~ytwrccsraip~~ksn~qpnr~ei~e~~vevl~pev~kl~~fmyfqrkaie~f~~ev~rlch~ekr~dfVseayll 159 (1253)
T KOG3534|consen 80 AANMYTWRCCSRAVPMAKSNDQPNRTEINEMVVEVLKPEVSKLGSFMYFQRKAIERFCEEVKRLCHAEKRKDFVSEAYLL 159 (1253)
T ss_pred HHHHHHHhhhhccCCccccCCCCccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCcchhHHhhhHhhhhhccCCchhHHHHhhhcchhccchhhHHHHHHHhhcccCChHhH
Q 000783 156 SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDI 235 (1287)
Q Consensus 156 ~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~sr~~~~~~d~~~v~~E~~~LSlFlA~~~pil~~L~~al~~i~~~edv 235 (1287)
++|++++||+++|+|||||+|+.||||+|||+-..+ +.|.|.++++ |++|+|||||++|.|.++|+..++.|+||||+
T Consensus 160 tlg~finmfavldElknmK~svknd~st~rra~qfl-~~msd~~a~~-~~qnlSmfla~~nki~~~l~~~l~~I~GYEeL 237 (1253)
T KOG3534|consen 160 TLGKFINMFAVLDELKNMKASVKNDFSTYRRAAQFL-TAMSDTQAVQ-ESQNLSMFLATQNKIKDDLKLQLETIEGYEEL 237 (1253)
T ss_pred HHHHHHHHHHHHhHHHHhHHHhhhhHHHHHHHHHHH-HHhccHHHHH-HHhhHHHHHHHhcchhhHHHHHHHhhcCHHHH
Confidence 999999999999999999999999999999995544 4456888887 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCccchhhheeeceeeeeecCCCCchhhHH-----hHhchhHHHhhhhcCCccccCCCcccC
Q 000783 236 LQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLY-----KRVKINRLINIFKSDPVIPAFPDLHLS 310 (1287)
Q Consensus 236 L~t~anvC~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~-----Kri~l~r~~kifK~~pVVPlfgDm~i~ 310 (1287)
|++++|+|++|+|+++|++|+||||+++||+|+++|||+ +.+||+ |||+|+|||||||+++||||||||||.
T Consensus 238 L~DvVNiCv~~yE~kmYLtP~EKHMlvKVmgFgLfLMDg---da~Ni~KLDqKKri~lsriDk~FK~LeVVPLfGDMQI~ 314 (1253)
T KOG3534|consen 238 LCDVVNICVHMYEHKMYLTPNEKHMLVKVMGFGLFLMDG---DAANIAKLDQKKRISLSRIDKIFKTLEVVPLFGDMQIE 314 (1253)
T ss_pred HHHHHHHHHHHHhheeecCcchhhhhHHhhhheeeeecC---chhhHhhhhhhhccCHHHHHHHHhheeeeeccCccchh
Confidence 999999999999999999999999999999999999998 577887 699999999999999999999999999
Q ss_pred HHHHHhhhchhhhhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcch
Q 000783 311 PAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADI 390 (1287)
Q Consensus 311 ~~~~~k~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~ 390 (1287)
|++|||+++||. .|+||+. .....+|||||++||++||+||.+|+++||+++||++++....+.|.
T Consensus 315 ~~~yik~S~Hye-----~SkW~~s---------~s~s~spq~ni~e~~~qIR~DH~~yiselArysNEV~t~~~~~~sDa 380 (1253)
T KOG3534|consen 315 PFRYIKRSAHYE-----ESKWPLS---------SSESISPQYNICEQMQQIREDHERYISELARYSNEVVTGSGEQKSDA 380 (1253)
T ss_pred HHHHhhhhcccC-----cccCCCc---------CcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCeeeecCCCCCCcH
Confidence 999999999885 2467654 12234899999999999999999999999999999888755455565
Q ss_pred hhhHhhhhhhHHHHHHHHHHHhhhHHHHHHHhhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHH
Q 000783 391 EWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSY 470 (1287)
Q Consensus 391 ~~~~~~~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIam 470 (1287)
+ +++++|+||+||||||.|+++|+|.|||||+||| |+. +|++||++||+||||||||||+|||+|+||+|||
T Consensus 381 E-----~R~~~dLAL~GlQLLsqWs~~V~E~ySWKLlhPT-d~~--~NkeCP~~AEEYERATRYNYtseEKfAlievIAM 452 (1253)
T KOG3534|consen 381 E-----NRELFDLALRGLQLLSQWSAHVMEVYSWKLLHPT-DKK--DNKECPENAEEYERATRYNYTSEEKFALIEVIAM 452 (1253)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCC-Ccc--ccccCCccHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4 6799999999999999999999999999999999 787 8999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHhhhhcCCCCCchhhhhccc
Q 000783 471 IKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSR-ILSDMRTLSADWMANNSRPEAEQQSMHH 549 (1287)
Q Consensus 471 IK~l~~lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~-il~~iR~~~~DW~~g~~~~~~~~~~~~k 549 (1287)
|||||++|.|+|++++++||++||+++|||+|.+|++|||+|+||||++++ ||++||++++||..|.+|++++. .|
T Consensus 453 IKGLQvlmgr~Esv~~~aiR~~vY~~LQdF~q~tlrEPLrkAvk~KKdll~Silqsvr~ti~Dwe~G~Ep~~dp~---~k 529 (1253)
T KOG3534|consen 453 IKGLQVLMGRMESVFNNAIRKTVYAELQDFIQVTLREPLRKAVKKKKDLLASILQSVRKTICDWEKGNEPNNDPD---LK 529 (1253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhccCCCCCCcc---cc
Confidence 999999999999999999999999999999999999999999999999876 99999999999999999999998 56
Q ss_pred cCCCCCC---ccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChH
Q 000783 550 VGEESRG---NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYT 626 (1287)
Q Consensus 550 ~~~~~~~---~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s 626 (1287)
|+++|+| |++|+|+||||||||||+|+|++++++.+ .|| .+.+|+++|+..+..|+.||++||||+||||||
T Consensus 530 GkKdPkggfdIkvPRr~vgPsSTQLYMvRTmLESLIaDK----sG~-KktLRk~ldg~~il~I~~Fhr~Sf~~~~L~n~S 604 (1253)
T KOG3534|consen 530 GKKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADK----SGG-KKTLRKSLDGPTILKIEVFHRKSFFWTHLLNFS 604 (1253)
T ss_pred CCcCCCCCcceeccccccCCCcchHHHHHHHHHHHhhcc----cCc-hhhhhhhcCCchhhhHHHHHHhhhHHHHHhhHH
Confidence 6667664 99999999999999999988887777532 111 123799999999999999999999999999999
Q ss_pred HHHHhhccccchhhhhhhhcc--CCeeeccCcCcchHHHHHHHhhcCCcchhhhhcccccccchHHHHHHHHHhhhhhHH
Q 000783 627 ATVSTLTDLGFLWFREFYLES--SRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYD 704 (1287)
Q Consensus 627 ~tL~~~~DLS~LWfREfyLEl--~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYD 704 (1287)
+||++|||||||||||||||| |+|||||||||||||||||||++++|||||+++||||||||||+|||++|+||||||
T Consensus 605 dtlqqccdLSQLWfREFyLEmTMGrRIQFPIEMSMPWILTDhIL~tkEpSmmE~vLY~LDLYNDsA~YaLt~F~KQFLYD 684 (1253)
T KOG3534|consen 605 DTLQQCCDLSQLWFREFYLEMTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTNFNKQFLYD 684 (1253)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccceecchhccCchhhhhhHHhcCChhHHHHhhcchhcccchHHHHHHHHHHHHhHH
Confidence 999999999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccCcccccccc-CCCCcccCC-hhHHHHhhcccceecccccchhhHHH
Q 000783 705 EIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD-NGEKYSVQP-MRLSALFKMTRVKLLGRSINLRSLIA 782 (1287)
Q Consensus 705 EIEAEvnLCFDqlv~kLSd~iF~~yK~~Aas~lLd~~f~~~~~-~~~~~~~~~-~Ry~~LL~QrhvqLLGRsIDL~~LIt 782 (1287)
||||||||||||||||||||||+|||++|+|++|||||+++|. .|..+++|| +||+|||+||||||||||||||+|||
T Consensus 685 EvEAEVNLCFDQFVYKLseqiFa~YK~lAgs~lLDKRfraEc~~~G~~i~~P~~nRyEtLLkQRHVQLLGRSiDLNrlit 764 (1253)
T KOG3534|consen 685 EVEAEVNLCFDQFVYKLSEQIFAHYKQLAGSMLLDKRFRAECKNSGTMIRYPPSNRYETLLKQRHVQLLGRSIDLNRLIT 764 (1253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcCeeeeCCCchhHHHHHHHHHHHHhcccccHHHHHH
Confidence 9999999999999999999999999999999999999999999 489998877 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 000783 783 ERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEM 862 (1287)
Q Consensus 783 QRln~~~~~~l~~ai~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL 862 (1287)
||+|++|.++||.||+||||.||||||||++|||+||+||+|||++|+|||||+|++||||||+ |||||||+||||||
T Consensus 765 QRvnaam~Ksld~AI~rFEsedltsIVELd~Lle~NRl~H~LLs~~l~ld~FD~mf~EANHnV~--aPyGRITLHVFwEL 842 (1253)
T KOG3534|consen 765 QRVNAAMYKSLDLAISRFESEDLTSIVELDGLLEINRLCHKLLSKYLTLDPFDAMFREANHNVS--APYGRITLHVFWEL 842 (1253)
T ss_pred HHHHHHHHHHHHHHHHhhccCCchhhhhhHhHHHHHHHHHHHHHHHhccCchHHHHHHhccccC--CCCceeEEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred hhcccccccccccCcccccCCCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHH
Q 000783 863 QSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLP 942 (1287)
Q Consensus 863 ~~D~~pNy~yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia 942 (1287)
+|||+||||||++||||||+.++|++.++|++||++.|+|+||||+||+||++|++.|++|+|.|||+||||||||||||
T Consensus 843 NyDFlpNycYNgsTnRFvRt~~~fsq~~qReKppq~~~~Yl~GSK~Ln~Ays~iy~~Y~~fvG~pHf~aicRLLgYQGIA 922 (1253)
T KOG3534|consen 843 NYDFLPNYCYNGSTNRFVRTRHPFSQEPQREKPPQVQPYYLWGSKSLNAAYSNIYGSYRNFVGPPHFKAICRLLGYQGIA 922 (1253)
T ss_pred ccccchhhhccCccchhhhhcccccccccccCCCCCCceEEecchHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhcccc-ccchHHHHHHHHHHHhhHHHHH
Q 000783 943 WLIRALLDHMSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGT-KSELKAEVLHGIKEIGSVLYWM 1020 (1287)
Q Consensus 943 ~vi~ell~~~~~~i~~-~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~-~~dlk~~v~~~frElGN~i~~~ 1020 (1287)
+|++||||++++++|+ +.+||++|++.|||+|+|||.+|||+|+++||+|||++|+ |+||||++||+|||+||+|+||
T Consensus 923 VvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN~I~FC 1002 (1253)
T KOG3534|consen 923 VVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGNAILFC 1002 (1253)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999997 9999999999999999999999999999999999999987 7899999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHhhccccCCCCCC---CCccc----ccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhh
Q 000783 1021 GLLDIVLREVDTTHFMQTAPWLGFLPGA---DGQIS----YHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQA 1093 (1287)
Q Consensus 1021 ~lle~aL~q~e~~d~~~aaPf~gi~P~~---~~~~~----~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a 1093 (1287)
++|||||+|||+||++||||||||+|++ +||++ ++++.||+|++ .+.+++++|+++ | +++|
T Consensus 1003 lliEqaLsqEEvcDLlhAA~fqni~Pr~~~ke~e~~~~k~krLE~kya~lh------lv~~iekigt~~---Q---~aIA 1070 (1253)
T KOG3534|consen 1003 LLIEQALSQEEVCDLLHAAPFQNILPRPPAKEGERLEAKMKRLEAKYAPLH------LVPLIEKIGTPQ---Q---AAIA 1070 (1253)
T ss_pred HHHHHHhhHHHHHHHHHhhhhccCCCCCccccchhHHHHHHHHHhhcCcee------ehhHHHHcCChH---H---hHHh
Confidence 9999999999999999999999999995 46655 88999999998 888999999765 4 5699
Q ss_pred hHHhhhhhhccccc-cHHHHHHHHHHHHHcccCCccccCCC-CCeeeecccchHhhhhhhhhceecccCCCCCCCccccc
Q 000783 1094 EAADLLYKANMNTG-SVLEYALAFTSAALDKYCSKWSATPK-TGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVL 1171 (1287)
Q Consensus 1094 ~~~d~l~~~~l~~g-s~f~~~L~~~~~~L~~~~~~W~g~p~-ngv~~id~~~ef~RlwSalqf~~c~p~~~~e~~~~e~f 1171 (1287)
|||||||||||||| |+||++|+||+++|++ ++|.|||| |||||||||+||||||||+|||||+|++.+|+|.||+|
T Consensus 1071 regdLlTkERLCCGLs~FEviL~Riks~L~D--piW~Gp~PtNGv~hvDECvEfhRlwSAlQFvyCiPv~~~E~t~Ee~F 1148 (1253)
T KOG3534|consen 1071 REGDLLTKERLCCGLSMFEVILTRIKSYLDD--PIWRGPPPTNGVMHVDECVEFHRLWSALQFVYCIPVRTNEFTAEELF 1148 (1253)
T ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHHHhcC--ccccCCCCCCCeeeHHHHHHHHHHHHHhheEEEEecCCCeeeHHHHh
Confidence 99999999999999 9999999999999998 99999855 99999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHhccccccccccchhhhhhhhhhhcccCCCCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 000783 1172 GDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCP 1251 (1287)
Q Consensus 1172 Gdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~~~~ 1251 (1287)
||||+||||+||+|||||||||+||||||+||||++||||++ ++||+|++||+||||||+||||||+||++|+.
T Consensus 1149 GdgL~WaGc~iIvLLGQqRRFevlDFCYHllrVqk~DGKDEi------ik~i~LkkMveRIRrfQiLNnqif~IL~kylk 1222 (1253)
T KOG3534|consen 1149 GDGLNWAGCTIIVLLGQQRRFEVLDFCYHLLRVQKADGKDEI------IKGIPLKKMVERIRRFQILNNQIFIILNKYLK 1222 (1253)
T ss_pred CCccccccceeeeeecchhhhHHHHHHHHHHHHhhccCchhh------hcCCcHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999997 67899999999999999999999999999999
Q ss_pred CCcchhhhhccCCCCccccc---CCCchhhhhhcCCC
Q 000783 1252 LEDKTACAIKQSGAPLHRIK---FENTVSAFETLPQR 1285 (1287)
Q Consensus 1252 ~~d~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~ 1285 (1287)
..|+. |+|||||| ||+|||++++..++
T Consensus 1223 ~ge~~-------~~~vEhVRcF~PPiH~s~as~~a~~ 1252 (1253)
T KOG3534|consen 1223 SGEGE-------GSPVEHVRCFQPPIHPSLASSAARR 1252 (1253)
T ss_pred cCCCC-------CCchhheeccCCCCChhhhhhhhcc
Confidence 99999 99999999 99999999998754
No 3
>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family. Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.
Probab=100.00 E-value=2.7e-246 Score=2219.59 Aligned_cols=804 Identities=42% Similarity=0.690 Sum_probs=630.2
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHhhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 000783 397 KGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS 476 (1287)
Q Consensus 397 ~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~~ 476 (1287)
++++|++|++||||||+||++|+||+||||+||++++..+.|++||+++++||||||||||++||+||||+|||||||++
T Consensus 3 n~~~~~~~l~glqlLS~wt~~I~E~~awKl~~P~~~~~~~~n~~~p~~~~~YEravRyNYs~eE~~alveiIamIKsl~~ 82 (820)
T PF05994_consen 3 NRELYDLALRGLQLLSRWTSRILEQYAWKLLHPTDDPPASQNKECPEDAEEYERAVRYNYSSEEKFALVEIIAMIKSLQS 82 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TT---T-TT--TTS-HHHHHTGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccCCcchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999997664467889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCC
Q 000783 477 MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESR 555 (1287)
Q Consensus 477 lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~-~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~ 555 (1287)
+|.++|++++++||++||+++|||||++|++|||+|+||||+ +.+||++||++|+||++|.+|+++++.++ ++++
T Consensus 83 ll~~~e~~~~~~i~~~I~~~~Q~Fvq~~L~~~l~~a~KkKK~~~~~iL~~iR~~~~Dw~~~~~p~~~~~~~~---~k~~- 158 (820)
T PF05994_consen 83 LLQRMEPVLAEAIRRHIYAELQDFVQNTLREPLRHAQKKKKDLISSILSSIRTTCADWMNGMEPPDDPKKKG---KKDP- 158 (820)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTT-HHHHHHHHHHHHHH---SSSS--TT-HHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcccccCCCCCCchhhcc---cCCC-
Confidence 999999999999999999999999999999999999995555 66799999999999999998888876333 2232
Q ss_pred CccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHHHhhccc
Q 000783 556 GNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDL 635 (1287)
Q Consensus 556 ~~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL~~~~DL 635 (1287)
..+|+.++|||+|+|+++++++++..+++|+| +|++++++++++|++||++|+||+|||||++||++||||
T Consensus 159 -------~~~~~i~~l~~lRt~le~li~~~~~~~k~g~~--~~~~l~~~~~~~i~~F~~~s~~~~~LL~~~~tl~~~~Dl 229 (820)
T PF05994_consen 159 -------KSGPSIQVLYMLRTMLESLISEKSGGKKGGLF--SRKDLDSKDLDQIEEFLNKSFFFPHLLNFSETLRQCCDL 229 (820)
T ss_dssp ---------------HHHHHHHHHHHH--------------TTTTS-HHHHHHHHHHHHHGGGHHHHHTHHHHHHHHS--
T ss_pred -------CCCCCcchHHHHHHHHHHHhCCcccccccccc--ccccCCHhHHHHHHHHHHHhcchHHHhCCHHHHHHhccH
Confidence 23455555999999999999998777778888 589999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccCCeeeccCcCcchHHHHHHHhhcCC-cchhhhhcccccccchHHHHHHHHHhhhhhHHHHHHHHhhHH
Q 000783 636 GFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQN-AGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCF 714 (1287)
Q Consensus 636 S~LWfREfyLEl~~~iQFPIe~SLPWILtdhiL~s~~-~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYDEIEAEvnLCF 714 (1287)
|||||||||||++++||||||||||||||||||++++ |+|+|+||||||||||||++||++||||||||||||||||||
T Consensus 230 s~LWfREfyLEl~~~iQFPIe~SLPwILtdhiL~s~~~~~l~E~ilyPLdlYNDAA~~AL~~lk~q~LyDEIEAEv~lcf 309 (820)
T PF05994_consen 230 SQLWFREFYLELTKRIQFPIEMSLPWILTDHILESKDKPSLMEYILYPLDLYNDAAHYALKKLKSQFLYDEIEAEVNLCF 309 (820)
T ss_dssp GGGS--HHHHHHTS-SS--GGG-HHHHHHHHHHHHT--GGGTTTHHHHHTHHHHHHHHHHHTS-BHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhhcccceeecCccCCccHHHHHHHHhcCCcchhHHHHhhhHHHhhHHHHHHHHHHHHhhhHHHHHHHhChhH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccccccccC-CCCc-ccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHH
Q 000783 715 DIFVSRLCETIFTYYKSWAASELLDPSFLFSSDN-GEKY-SVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFREN 792 (1287)
Q Consensus 715 Dqlv~kLSd~iF~~yK~~Aas~lLd~~f~~~~~~-~~~~-~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~ 792 (1287)
|||||||||+||+|||++||+++||++|+.+|.+ +... ..|++||++|||||||||||||||||+||+||||++|+++
T Consensus 310 dqlv~~lsd~if~~yK~~Aa~~~ld~~~~~~~~~~~~~~~~~~~~r~~~ll~Qr~v~lLGRsIDL~~Li~QRln~~~~~~ 389 (820)
T PF05994_consen 310 DQLVFKLSDQIFTHYKSLAASMLLDKRFRAELKNSGIAILYPPANRYETLLQQRHVQLLGRSIDLNRLITQRLNALFRKS 389 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTT-----------HHHHT-S-EEETTEEE-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCcccCCCCcchHHHHHhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 4333 4467999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhccccccc
Q 000783 793 LEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDL-SIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFI 871 (1287)
Q Consensus 793 l~~ai~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L-~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~ 871 (1287)
||.||+||||+|||||||||++|+|+|+||+|||+|+ +|||||+||+||||++||+||+|||++||+|||++||+||||
T Consensus 390 le~ai~rfEs~dl~~ivele~ll~i~r~TH~LLse~l~~Ld~Fd~ml~Ean~~vs~~s~~gRI~~hv~~eL~~D~~PNy~ 469 (820)
T PF05994_consen 390 LEFAISRFESSDLTSIVELEHLLDILRLTHRLLSEHLLSLDPFDDMLREANHNVSPVSPYGRITLHVFWELNYDFLPNYC 469 (820)
T ss_dssp HHHHHHHHHTS-GGGHHHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHTT-SS--SSS-HHHHHHHHHHHHTHHHHEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHhccccccccccHHHHHHHHHHhcccccCce
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHH
Q 000783 872 LCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDH 951 (1287)
Q Consensus 872 yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~ 951 (1287)
||++|+| ..++++++|++||+++++++||+|+||+||++++++|++|||+|||+||||||||+|||+|++||++
T Consensus 470 yn~~T~R-----~~~~~~~~r~k~p~~~~~~~~Gsk~l~~a~~~i~~~~~~FvG~pH~~ai~rLLg~~~la~li~ell~- 543 (820)
T PF05994_consen 470 YNSSTQR-----MVFSEPVQREKPPKAQPSYLFGSKALNAAYQTILSLYRGFVGVPHFKAIVRLLGYRGLAVLIEELLK- 543 (820)
T ss_dssp EETTTTE-----GGG-------------GGGTTSSHHHHHHHHHHGGGGGS-B-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eeCCCCC-----CCCCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHHhCCccChHHHHHHHHHhCCCcHHHHHHHHHH-
Confidence 9999999 5567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhcccc-ccchHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 000783 952 MSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGT-KSELKAEVLHGIKEIGSVLYWMGLLDIVLRE 1029 (1287)
Q Consensus 952 ~~~~i~~-~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~-~~dlk~~v~~~frElGN~i~~~~lle~aL~q 1029 (1287)
+|++ +.|||++++++|||+|++|++|||++|||+||++||++++ |+||| +|||+||||||+++||++||+||+|
T Consensus 544 ---~i~~~~~~~V~~l~~~mPk~~~lP~~dygs~g~~~~y~~~l~~~~~y~dLk-evfq~frEiGN~i~f~~lLd~al~q 619 (820)
T PF05994_consen 544 ---LIQNKIEPYVKALMEAMPKSCKLPPFDYGSAGVYDYYEAQLKDIIQYPDLK-EVFQAFREIGNAIVFCLLLDQALSQ 619 (820)
T ss_dssp ---HHHTHHHHHHHHHHHHS-SB-----GGG-HHHHHHHHHHHTHHHHS-TTTT-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhCCccccCCCccCCCHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6665 8999999999999999999999999999999999999965 88999 9999999999999999999999999
Q ss_pred hhhHHHHhhccccCCCCCCCCcccccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhhhHHhhhhhhccccc-c
Q 000783 1030 VDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-S 1108 (1287)
Q Consensus 1030 ~e~~d~~~aaPf~gi~P~~~~~~~~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a~~~d~l~~~~l~~g-s 1108 (1287)
+|++|++|||||+|++|+++..+...++.+..+..+.+++. ... +.....-||+|||+|+||| |
T Consensus 620 ~e~~~~~~aapf~~~~p~~~~~~~~~~~~~~~~~~~~l~~~-------~~~--------l~~~~~~~dll~k~~l~~~~s 684 (820)
T PF05994_consen 620 EEVCDLLQAAPFQGIIPRPYVKEGEEQETKFDPTFKRLESK-------FAS--------LQVVPGVADLLTKERLCCGLS 684 (820)
T ss_dssp HHHHHHHHHGGGGT--------TT--HHHH----HHHHHHH-------TGG--------G-HHHHHHHHHHH--GGGTEE
T ss_pred HHHHHHHHHhhhcCCCCCccccccchhhhHHHHHHHHHHHH-------HHH--------hhccchHHhhhcHHHHhhHHH
Confidence 99999999999999999976221111222223333222221 111 0111122899999999998 9
Q ss_pred HHHHHHHHHHHHHcccCCccccC-CCCCeeeecccchHhhhhhhhhceecccCC-CCCCCcccccCCcccchHHHHHHHh
Q 000783 1109 VLEYALAFTSAALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESS-QSPSNNHKVLGDSVAWGGCTIIYLL 1186 (1287)
Q Consensus 1109 ~f~~~L~~~~~~L~~~~~~W~g~-p~ngv~~id~~~ef~RlwSalqf~~c~p~~-~~e~~~~e~fGdgl~waGc~ii~LL 1186 (1287)
+||++|++++++|++ |+|+ |+||||+||+|+|||||||||||+||+|+. .++.+++|+||||++|||||||+||
T Consensus 685 lf~~~L~~~~~~L~~----w~g~~p~ngv~~i~~~~eF~RlWSaLQFv~C~p~~~~~~~~~~e~fGDGl~waGctiI~LL 760 (820)
T PF05994_consen 685 LFEYVLARIKSFLES----WSGAPPSNGVMDIDECKEFHRLWSALQFVFCIPEANENEDSVEELFGDGLQWAGCTIIYLL 760 (820)
T ss_dssp SHHHHHHHHHTT--S----TT-S--TTSS--SSB--SHHHHHHHHHHHHHS----TTS--HHHHHBTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh----ccCCCCCCCceecccccHHHHHHHHHHHHHhCCcccCCCcchHHHhcchhhHHHHHHHHHh
Confidence 999999999999997 8886 669999999999999999999999999998 6789999999999999999999999
Q ss_pred ccccccccccchhhhhhhhh----hhcccCCCCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhh
Q 000783 1187 GQQLHFELFDFSYQVLNVAE----VEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKA 1248 (1287)
Q Consensus 1187 gQq~rFe~lDF~yhil~v~~----~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~ 1248 (1287)
|||+|||+||||||||||++ +|++|+. +.|+++++||+||||||+||+|||++|+|
T Consensus 761 gQq~~Fe~ldf~yhil~v~~~e~~~~~~d~~------~~~~~l~~~v~~i~~~~~Ln~qiF~~l~~ 820 (820)
T PF05994_consen 761 GQQRRFEALDFSYHILRVQEVEFAVDGKDEL------IKGVSLKRMVERIRRFQRLNNQIFSILNK 820 (820)
T ss_dssp T-HHHHHHH-HHHHHHHHHH----HH----E------ETTEEHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHhHHHHHHHHHhhhhhhhcchhh------ccCCCHHHHHHHHHHHHHHhcCCcccCCC
Confidence 99999999999999999999 7887765 56799999999999999999999999986
No 4
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=100.00 E-value=2e-62 Score=545.62 Aligned_cols=271 Identities=18% Similarity=0.291 Sum_probs=235.7
Q ss_pred CCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHH
Q 000783 41 SPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLRE 120 (1287)
Q Consensus 41 ~~tnf~Dr~a~~t~~~eE~e~~~~ln~vLeeg~~~l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~ 120 (1287)
+-++||+.. --.+|+++|+++++||++|+++|++||+|||||++||+||++ ||+.|+||+||+||+|+|+|||+
T Consensus 3 ~flDfena~----Pt~~E~ev~~~v~~VL~~~~~iL~~L~~Yrgas~~Ir~Ai~~--Ps~ee~qe~aw~al~P~V~kLk~ 76 (303)
T PF07159_consen 3 IFLDFENAQ----PTEEEREVYNEVNEVLEEGEQILQDLYTYRGASREIRQAISN--PSDEELQEKAWEALEPLVKKLKE 76 (303)
T ss_pred cceecCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHcC--CChHHHHHHHHHHHhhHHHHHHH
Confidence 334566432 135899999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc--ccCCCchHHHH-HHHHHHHHHHhhccccccCCCCCcchhHHhhhHhhhh-hccC
Q 000783 121 IQRWQASAASKLAADMQRFSRPER--RINGPTITHLW-SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVS-VQWQ 196 (1287)
Q Consensus 121 F~~Fs~~a~~~l~~~l~~l~h~E~--~q~~~se~~L~-~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~sr~~-~~~~ 196 (1287)
||+||.++++.|++.|..||+.+. ++.+...++|. |||+||||+++||+|||+||+||||||||||+++|++ .+.+
T Consensus 77 Fy~Fs~~le~~~~~ll~~L~~~~~~~~~~l~~~qAL~kq~a~iL~f~l~fD~LK~~npaIqNDFSyYRRa~sr~k~~~~~ 156 (303)
T PF07159_consen 77 FYEFSQELEKVFPKLLKELCSGPLKPKEHLEQKQALAKQFAEILDFVLKFDELKMMNPAIQNDFSYYRRALSRMKMNNMQ 156 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhccChhhhccHHHHHHHHHHHhhcccc
Confidence 999999999999999999998643 35577666665 9999999999999999999999999999999999987 3333
Q ss_pred C-chhHHHHhhh-cchhccchhhHHHHHHHhhc---------ccCChHhHHHHHHHHHHHhhhcccccC----Cccchhh
Q 000783 197 D-TDSMREELDD-LQIFLSTRWAILLNLHVEMF---------RVNNVEDILQVLIVFAVESLELDFALL----FPERHIL 261 (1287)
Q Consensus 197 d-~~~v~~E~~~-LSlFlA~~~pil~~L~~al~---------~i~~~edvL~t~anvC~~mlE~~~y~~----p~ek~~l 261 (1287)
+ +..+++|++| ||||||+++||+++|+++++ +++|++|+|+||||+|++|+|+++|.+ +++++||
T Consensus 157 ~~~~~v~~elaN~mSlF~A~~tPmlk~L~~at~~~v~~~~~l~i~n~~d~L~t~a~vC~~mle~~~~~sr~~~~et~~f~ 236 (303)
T PF07159_consen 157 EEENEVSDELANRMSLFYAEATPMLKTLSEATTKFVSENKDLPIENTTDVLSTMANVCRVMLENPEYRSRFQSEETVLFC 236 (303)
T ss_pred ccchhhhHHHhhccceeeeeCCcHHHHHHHHHHHHHHcCccCCcccHHHHHHHHHHHHHHHHcCccccccCCCccceeeE
Confidence 3 3467888766 99999999999999999865 589999999999999999999999988 6789999
Q ss_pred heeeceeeeeecCCCCchhhHH-hHhchhHHHhhhhcCCccccCCCcccCHHHHHhhhchhh
Q 000783 262 LRVLPVLVVLATSSEKDSESLY-KRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYF 322 (1287)
Q Consensus 262 LRVM~~~iiL~D~v~~~~~ni~-Kri~l~r~~kifK~~pVVPlfgDm~i~~~~~~k~~~~~~ 322 (1287)
||||||+||||||+++.|++.. ++|++.++.|++|+.|. +-.=.+.+-|+=++-|+
T Consensus 237 lRvM~g~iiLyDhv~~~GaF~k~s~i~ik~~ik~lk~~~~-----~~~~~Lln~lryttkhl 293 (303)
T PF07159_consen 237 LRVMVGAIILYDHVHPVGAFSKKSPIDIKGCIKVLKDQPP-----ESVEGLLNALRYTTKHL 293 (303)
T ss_pred eEhhhceEEEEeccCCCCccccCCCCCHHHHHHHHHhcCc-----hhHHHHHHHHhHhhccC
Confidence 9999999999999999999877 59999999999999885 22334455555555554
No 5
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-54 Score=456.35 Aligned_cols=236 Identities=17% Similarity=0.236 Sum_probs=219.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHH
Q 000783 56 SEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQ---ASAASKL 132 (1287)
Q Consensus 56 ~eE~e~~~~ln~vLeeg~~~l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~F~~Fs---~~a~~~l 132 (1287)
.||+++|++.+++|++++.++.++.+|++.+-+++.++.| |++.++++++|.+|+|.|+|+|+||+|+ +++++++
T Consensus 29 ~eerei~n~~~evl~d~~~vl~d~~~y~~~~~~~r~~iq~--~~d~q~~ekaw~av~PlV~r~k~~ye~~~~lek~v~~l 106 (321)
T KOG3951|consen 29 DEEREIYNMAEEVLQDADLVLADVSSYGNGCYAERNAIQN--PADEQLQEKAWGAVVPLVGRTKSYYEHVAKIEKIVPII 106 (321)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhC--CCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999988899999999 8999999999999999999999999999 5778888
Q ss_pred HHHHHh-----hcccccccCCCchHHHHHHHHHHHHHHhhccccccCCCCCcchhHHhhhHhhhh-hccCCchhHHHHhh
Q 000783 133 AADMQR-----FSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVS-VQWQDTDSMREELD 206 (1287)
Q Consensus 133 ~~~l~~-----l~h~E~~q~~~se~~L~~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~sr~~-~~~~d~~~v~~E~~ 206 (1287)
+++|.+ .+|++++|++++ |||+||+|+++||++||++|+||||||||||+++|+| .+.+.+ .+++|++
T Consensus 107 lg~L~~~pl~~~~~l~~~QalaK-----QfAeil~F~LrFDelKM~tpaIqNDfSYYRRt~sr~rv~~~~~~-ev~~ELa 180 (321)
T KOG3951|consen 107 LGSLSSGPLPLEEQLANKQALAK-----QFAEILHFTLRFDELKMRTPAIQNDFSYYRRTLSRMRVYQDPAN-EVNNELA 180 (321)
T ss_pred HHhhcCCCCCchHHHHHHHHHHH-----HHHHHHHheehhhhhhccChhhccchHHHHHHHHHHHhccChhh-hccHHHH
Confidence 888877 688999998888 9999999999999999999999999999999999999 444443 4556977
Q ss_pred h-cchhccchhhHHHHHHHhhc---------ccCChHhHHHHHHHHHHHhhhcccccC----Cccchhhheeeceeeeee
Q 000783 207 D-LQIFLSTRWAILLNLHVEMF---------RVNNVEDILQVLIVFAVESLELDFALL----FPERHILLRVLPVLVVLA 272 (1287)
Q Consensus 207 ~-LSlFlA~~~pil~~L~~al~---------~i~~~edvL~t~anvC~~mlE~~~y~~----p~ek~~lLRVM~~~iiL~ 272 (1287)
| ||||||++|||+|+|+++++ +|+|++|||+||+++|+.|+|||+|++ +++||+|+|||+|+||||
T Consensus 181 nrmslFyaeatPMLKtLs~at~kfvsenk~lpIeNTTd~l~TmasVCr~MLenpe~~sr~t~eet~~~clrvmvGlvILy 260 (321)
T KOG3951|consen 181 NRMSLFYAEATPMLKTLSNATTKFVSENKNLPIENTTDCLSTMASVCRVMLENPEYLSRFTNEETKMLCLRVMVGLVILY 260 (321)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHhccCCCCccchhHHHHHHHHHHHHHhcCHHHHHHhcchhhhhhhhhhhcceEEee
Confidence 5 99999999999999999966 899999999999999999999999965 899999999999999999
Q ss_pred cCCCCchhhHH-hHhchhHHHhhhhcCC
Q 000783 273 TSSEKDSESLY-KRVKINRLINIFKSDP 299 (1287)
Q Consensus 273 D~v~~~~~ni~-Kri~l~r~~kifK~~p 299 (1287)
|||+++|+++. .+|++..+.|.+|..|
T Consensus 261 DHVhp~GAFv~~s~iDmkgcvrllk~q~ 288 (321)
T KOG3951|consen 261 DHVHPNGAFVSNSSIDMKGCVRLLKLQP 288 (321)
T ss_pred ecccccccccccCcCcHHHHHHHHHcCC
Confidence 99999999988 7999999999999888
No 6
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=98.76 E-value=6.4e-05 Score=93.02 Aligned_cols=508 Identities=15% Similarity=0.188 Sum_probs=281.5
Q ss_pred ccccCCcceEeeccCCCCCCCcccccc----chhh-cchhHHHHHHHHHHHHHHHH-HHHHHHhhccccccccCCCCCCC
Q 000783 23 PEVQGPSVLVSTERGATASPIEYSDVN----AYRL-SLSEDTKALNQLNTLIQEGK-EMASVLYTYRSCVKALPQLPNSM 96 (1287)
Q Consensus 23 P~ie~~~~~l~y~~~~~~~~tnf~Dr~----a~~t-~~~eE~e~~~~ln~vLeeg~-~~l~~LytYRscsraIpqaisn~ 96 (1287)
=+.-..|++|.|.++ -+++..|-- -+.. -++-=+...++++.+-+||+ .+...|+.|.-- +. .+
T Consensus 26 w~~~~~pv~l~~~~~---e~~~l~~li~t~n~~~~Kvl~~la~lc~Ei~~L~~ea~~~f~~~l~~~ge~---~~----~~ 95 (567)
T PF14745_consen 26 WDFHLDPVSLQLGPY---EQISLSDLIKTDNKLLNKVLAVLASLCNEIRKLKEEAETKFYPPLLFYGER---ID----EE 95 (567)
T ss_pred ccCCCCceEEecCch---hhccHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CC----cc
Confidence 345567889998532 222222221 0000 11233456668888889999 899999998422 22 21
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-C----CCchHHHH-HHHHHHHHHHhhccc
Q 000783 97 KHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRI-N----GPTITHLW-SMLKLLDVLVQLDHL 170 (1287)
Q Consensus 97 qpn~~eiye~t~~vL~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q-~----~~se~~L~-~La~iLdf~l~lD~L 170 (1287)
.....|.+..... ..|....|-.|..=...++..+...|..+...++.. . .+.-..++ .||++|-.++.+|++
T Consensus 96 ~~~~ge~~~~i~~-~l~~lq~l~~~~~R~~~Vv~n~v~QLaaly~~~~~~~~~~~~~v~l~~vf~~lg~lL~vlvtlDeI 174 (567)
T PF14745_consen 96 SLPEGEAQIMIGR-MLPFLQDLSCFVNRCREVVKNLVQQLAALYSSQKAPKPIDFKGVHLQTVFDHLGELLRVLVTLDEI 174 (567)
T ss_pred CCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455556666 778888888887777777777777887776664211 1 23334445 999999999999999
Q ss_pred cccCCCCCcchhHHhhhHhhhhhccCCc-hhHHHHhhhcchhccc------hhhHHHHHHHhhcc------cCCh----H
Q 000783 171 KNAKASIPNDFSWYKRTFTQVSVQWQDT-DSMREELDDLQIFLST------RWAILLNLHVEMFR------VNNV----E 233 (1287)
Q Consensus 171 K~~k~sIqNDFS~YRRa~sr~~~~~~d~-~~v~~E~~~LSlFlA~------~~pil~~L~~al~~------i~~~----e 233 (1287)
=..|+++.+.++.|||.+..++.+ |+. ....+++..+.-.++. ...+.+++-++... +.+- +
T Consensus 175 i~~n~~L~~~w~~ykr~l~~v~~n-p~~f~~~~~~l~~le~ll~~le~~ll~g~iF~~~~eq~fd~~~~~~v~~n~~l~e 253 (567)
T PF14745_consen 175 IEQNPSLRDHWSLYKRMLKSVRHN-PSKFGVTEEKLRQLEKLLADLEGQLLDGNIFQRCLEQLFDDKGQVSVSKNKRLSE 253 (567)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcC-hhhcCCCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhcccccceeccccHHHHH
Confidence 999999999999999999888754 221 1111112222111111 11233333333222 2222 3
Q ss_pred hHHHHHHHHHHHhhhcc-cccCCccchhhheeeceeeeeecCCCCchhhHHhHhchhHHHhhhhcCCccccCCCcccCHH
Q 000783 234 DILQVLIVFAVESLELD-FALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPA 312 (1287)
Q Consensus 234 dvL~t~anvC~~mlE~~-~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~Kri~l~r~~kifK~~pVVPlfgDm~i~~~ 312 (1287)
|....+-+.+...-.+- ....-+++..++++.+..++.+=...+ .=||+ +.++-.+.|..|+||++|..-..|.
T Consensus 254 ef~~~l~~~~~~~e~~l~~~~e~~~r~~~igl~~L~vl~~~Lf~~----~Dkkl-~K~vwe~~kk~P~v~l~g~v~w~P~ 328 (567)
T PF14745_consen 254 EFAAYLKELLEELEAKLGEPKELDDRKDFIGLCGLYVLHYHLFPS----VDKKL-FKRVWEVQKKVPAVPLYGNVIWFPD 328 (567)
T ss_pred HHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHHHHccc----cchHH-HHHHHHHhcCCceEEEeccEEechH
Confidence 44444444443333331 112235666788876654444321111 11333 4667888899999999999999999
Q ss_pred HHHhhhchhhhhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhh
Q 000783 313 AILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEW 392 (1287)
Q Consensus 313 ~~~k~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~ 392 (1287)
.|+.+..|.-. +...-|++. ........| +-..-.++-.+=..|..+.+.=+.++.-..... .
T Consensus 329 ~FL~~~~p~~~------k~~d~k~~~-----~~~~~r~~~-l~~~~~~~~~~v~~~~~~vs~W~v~m~s~~~~~-----~ 391 (567)
T PF14745_consen 329 DFLRRHLPKEI------KFLDKKSIE-----AVKQARRAY-LQQRDQSFPKDVQQLYLQVSSWMVEMESILRPQ-----S 391 (567)
T ss_pred HHHHHhCcHHh------hhcccchhH-----HHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCcc-----c
Confidence 99998766531 111101100 000000011 112222233333344444444343333322111 1
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhHHHHHHHhhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHH
Q 000783 393 CKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIK 472 (1287)
Q Consensus 393 ~~~~~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK 472 (1287)
..+.-.....+.++|+.+..+-+..|.....=... - +.+ . |...-.++...|-|+|
T Consensus 392 ~~~~L~~~~~LllqGv~lA~~i~~lv~t~i~LH~~--l-~~p--m-------------------tk~~v~~l~rlvElLK 447 (567)
T PF14745_consen 392 FEEDLQSRCNLLLQGVRLAYQISHLVKTLINLHMS--L-EKP--M-------------------TKSTVRALCRLVELLK 447 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c-cCC--C-------------------CHHHHHHHHHHHHHHH
Confidence 12223366789999999999999888887754432 1 111 2 4467888999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--hhHHHHHHHHHHHHhhhhcCCCCCchhhhhccc
Q 000783 473 NIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTF-RKK--KDLSRILSDMRTLSADWMANNSRPEAEQQSMHH 549 (1287)
Q Consensus 473 ~l~~lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~-KkK--k~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k 549 (1287)
+++....+..+++++.+...++ .+|.-+...|...-.+-. +|| +...++++.+.-.- + ..+
T Consensus 448 aI~~tf~~~~~~ia~~~~~i~Q-~l~~~i~~~L~~~kk~l~~~kk~s~~~ld~lsal~lae-~--------------~L~ 511 (567)
T PF14745_consen 448 AIQHTFHRRSMVIAESISHIVQ-HLQYKILRLLETAKKRLVSDKKYSERKLDVLSALQLAE-R--------------LLN 511 (567)
T ss_pred HHHHHHHHccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-H--------------Hhc
Confidence 9999999999999886554332 233333334443222222 122 11123443333111 0 111
Q ss_pred cCCCCCCccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHH
Q 000783 550 VGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATV 629 (1287)
Q Consensus 550 ~~~~~~~~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL 629 (1287)
| +||+.-+-+++..++... + ++.++.++.+.+..-+++ -.-|-+|.+.+
T Consensus 512 G--------------p~T~~R~~i~~Lal~v~~-~-------------~~~~~~~~~~~~~~~l~r---L~~l~~l~~~i 560 (567)
T PF14745_consen 512 G--------------PPTKERLLILRLALSVAL-Q-------------SKTFSDDELEDLRSLLKR---LDLLSDLQRNI 560 (567)
T ss_pred C--------------CCcHHHHHHHHHHHHHHH-h-------------cCcCCHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 1 134445666676666431 1 234666788777777777 44556678899
Q ss_pred Hhhccc
Q 000783 630 STLTDL 635 (1287)
Q Consensus 630 ~~~~DL 635 (1287)
+++||=
T Consensus 561 ~~~cDc 566 (567)
T PF14745_consen 561 RQACDC 566 (567)
T ss_pred HHhcCC
Confidence 999984
No 7
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=97.99 E-value=0.17 Score=67.47 Aligned_cols=811 Identities=17% Similarity=0.224 Sum_probs=396.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-ccc----------------------cccCCCCCCCC--CCchHHHHHHHHhhh
Q 000783 58 DTKALNQLNTLIQEGKEMASVLYTYR-SCV----------------------KALPQLPNSMK--HSQADLYLETYQVLD 112 (1287)
Q Consensus 58 E~e~~~~ln~vLeeg~~~l~~LytYR-scs----------------------raIpqaisn~q--pn~~eiye~t~~vL~ 112 (1287)
+.++=+++-.+-+.|++++.-||+-+ -|+ +.+|.+..... +-=.....+..+.|.
T Consensus 3 ~~k~aEkl~iln~r~~g~l~rlynikk~~~~~k~kp~fl~dK~~e~~~K~i~kkfp~id~~~~~~~~~~~~~~e~~~~L~ 82 (1116)
T PF09735_consen 3 QQKLAEKLTILNDRGEGMLTRLYNIKKACGDPKSKPSFLSDKFIESAIKYIVKKFPNIDIRSNGLEPLQNRKKEILKSLS 82 (1116)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTS-GGGT-TTTHHHHHHHHHHTT-------TTHHHHHTHHHHHHHHH
T ss_pred cchHHHHHHHHhhcccchhhhccChHhhhcCCCCCCccccccChHHHHHHHHHhCCCCCcccccchHHHHHHHHHHHHHH
Confidence 34455566667789999999999864 452 33444422211 000223566788899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC-CCchHHHH---HHHHHHHHHHhhccccccCCCCCcchhHHhhhH
Q 000783 113 LEMSRLREIQRWQASAASKLAADMQRFSRPERRIN-GPTITHLW---SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTF 188 (1287)
Q Consensus 113 PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~-~~se~~L~---~La~iLdf~l~lD~LK~~k~sIqNDFS~YRRa~ 188 (1287)
|...-+.+.|+|.+.+.+.+-..=...++.+-..+ .-...||. ..++++=++-..++.|+. .-.|..+.
T Consensus 83 ~~Y~tf~D~~df~d~v~elL~~i~~~~~~ldi~~N~~lt~~yLdL~v~yv~~~lllsri~drK~i-------l~lyn~a~ 155 (1116)
T PF09735_consen 83 PYYYTFVDLMDFRDHVYELLTTIDACQITLDITLNFDLTKAYLDLVVNYVSVMLLLSRIEDRKAI-------LGLYNAAY 155 (1116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----TTTSHHHHHHHHHHHHHHHHHHHHHHT-TTHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeeeccccCHHHHHHHHHHHHHHHHHHHHHhhcccHHHH-------HHHHHHHH
Confidence 99999999999999888777755555677666554 22234555 556666666666665553 23465553
Q ss_pred hhhhhccCCchhHHHHhhhc-chhccchhhHHHHHHHhhcccCC-hHhHHHHHHHHH------HHhhhcccccC------
Q 000783 189 TQVSVQWQDTDSMREELDDL-QIFLSTRWAILLNLHVEMFRVNN-VEDILQVLIVFA------VESLELDFALL------ 254 (1287)
Q Consensus 189 sr~~~~~~d~~~v~~E~~~L-SlFlA~~~pil~~L~~al~~i~~-~edvL~t~anvC------~~mlE~~~y~~------ 254 (1287)
... ++..|. .-++| +|+..+ .+.+|.|.+++.++.. ..+.|..+..+- .+-.-+...++
T Consensus 156 ~~~-~g~~e~-----~~~Rl~q~i~~y-~~P~kkL~eef~p~~~~i~~aL~Sl~~~~~rr~~~a~~wR~~~~lsl~~~p~ 228 (1116)
T PF09735_consen 156 EMQ-HGQSEP-----SFPRLGQMILDY-DNPLKKLQEEFQPHSRRIGSALMSLRPIYPRRNLTADQWRSAQLLSLISPPA 228 (1116)
T ss_dssp HTT-SSS--T-----THHHHHHHHHHT-SSHHHHHHHHTTTTHHHHHHHHHGGGGTHHHHS--HHHHHHTTTT-SSSSGG
T ss_pred HHH-cCCCCC-----CHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcCcccCCCChh
Confidence 222 111111 12343 255555 3444566665554321 122222221111 11111122211
Q ss_pred ----Cccchh----------hheeeceeeeeecCCCCchhhHHhHhch-hHHHhhhhcCCccccCCCcccCHHHHHhhhc
Q 000783 255 ----FPERHI----------LLRVLPVLVVLATSSEKDSESLYKRVKI-NRLINIFKSDPVIPAFPDLHLSPAAILKELS 319 (1287)
Q Consensus 255 ----p~ek~~----------lLRVM~~~iiL~D~v~~~~~ni~Kri~l-~r~~kifK~~pVVPlfgDm~i~~~~~~k~~~ 319 (1287)
|..-.. .-|...++..+. |.. ...--.+ +-....++..=|||||+|-.+.+-.+++.
T Consensus 229 ~il~p~~~~~~~~e~lsl~~~~~Wii~g~L~c-p~~-----L~~~~~~~~l~~~aL~~~~~i~LfRde~l~iH~~~~~-- 300 (1116)
T PF09735_consen 229 DILTPAQTDTMACEYLSLEVMERWIIFGFLVC-PQE-----LLQQPSILDLWKLALQDGLVITLFRDEVLNIHKEIET-- 300 (1116)
T ss_dssp GTTS----TTHHHHHS-HHHHHHHHHHHHHHT-THH-----HHH-HHHHHHHHHHHTT-SEEEEETTEEEEHHHHHHH--
T ss_pred hccCCccCcchhhhhhhhhhHHHHHhheeeec-hhh-----hcCChHHHHHHHHHhccCcEEEEeccchhhHHHHHHH--
Confidence 111111 112222222221 110 0000012 22344588899999999999999998876
Q ss_pred hhhhhhhhhc-ccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhhhHhhhh
Q 000783 320 MYFQKFSAQT-RLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKG 398 (1287)
Q Consensus 320 ~~~~~~~~~~-~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~~~~~~~ 398 (1287)
||+..+..+ |... .+|+.+ +-+. +=+.+..|...|+..- ..++.+.-..+|..-.++
T Consensus 301 -~~~~~k~~~Kr~~~--------vkE~~~----~A~~-~~~~~HreRR~~Lr~~---Lkel~~l~~dqPgLLgPK----- 358 (1116)
T PF09735_consen 301 -FFESKKGYSKRLSE--------VKECAE----QALQ-NAGDLHRERRRYLRQA---LKELVLLLTDQPGLLGPK----- 358 (1116)
T ss_dssp -HHTT-GGGTTHHHH--------HHHHHH----HHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHH-GGGGTTT-----
T ss_pred -HHHHhhhhhhhHHH--------HHHHHH----HHHH-hcchhhHHHHHHHHHH---HHHHHHHhhhCccccchh-----
Confidence 443222111 1000 112222 1122 2333444444444322 223333322222211111
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHH--HHHHHHHHHHHHHHH
Q 000783 399 NMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEER--KALVELVSYIKNIGS 476 (1287)
Q Consensus 399 ~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~--~alveiIamIK~l~~ 476 (1287)
..+++.||-+- .+=.-|=+-|-.+.++ +. + . .++ ++|- .-+.|+|-.+--|..
T Consensus 359 --~~~v~~aLs~A-------rdEV~W~~rH~~~~p~-~~-~-----k------~~~---~~d~~D~~i~eLL~~m~eLr~ 413 (1116)
T PF09735_consen 359 --ALMVFAALSFA-------RDEVLWLFRHNDNPPP-KK-K-----K------KKT---DEDYIDRQIPELLFYMEELRS 413 (1116)
T ss_dssp --HHHHHHHHHHH-------HHHHHHHHHHHHHS--------------------SS---TTTT--TTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHH-------HHHHHHHHHccCCCCc-cc-c-----c------cCC---ccccccccHHHHHHHHHHHHH
Confidence 24566665432 2334566555542111 11 0 0 000 1111 137888888888999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCCC
Q 000783 477 MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRG 556 (1287)
Q Consensus 477 lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~~ 556 (1287)
++.++..+++++--.++. .|--..|++.++.-..=..+...+|+++-++...=. .+. .++...
T Consensus 414 Lv~k~~~viqrYy~~yl~----~~Da~~L~~~i~~~~~~~eee~~ilss~~~~l~~l~------~~~-------~e~~~~ 476 (1116)
T PF09735_consen 414 LVRKYSQVIQRYYVQYLS----GYDALVLNELIQNLSVCPEEESVILSSFVQTLSSLS------VKQ-------VENGEK 476 (1116)
T ss_dssp HHHHSHHHHHHHHHHHHH----HTHHHHHHHHHTT-S---HHHHHHHHHHHHHHHT--------HHH-------HHTT--
T ss_pred HHHHHHHHHHHHHHHHhh----cccHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhCC------ccc-------cccCCc
Confidence 999999988864332222 222223333332211112344447777755553321 000 001000
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhC-hHHHHHhhccc
Q 000783 557 NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILD-YTATVSTLTDL 635 (1287)
Q Consensus 557 ~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn-~s~tL~~~~DL 635 (1287)
. .-+.--++-+|.+.. .|.. |..+.=.+.+.|-...+...||..+.| +.+.|++-|||
T Consensus 477 ~-------Df~~lRlDW~RLqa~--~S~~------------~s~l~L~~~~~L~~~mN~i~fHsk~VD~lde~L~etSdL 535 (1116)
T PF09735_consen 477 F-------DFSGLRLDWFRLQAY--TSSS------------RSPLQLRENEKLASLMNTIVFHSKMVDSLDELLRETSDL 535 (1116)
T ss_dssp ----------HHHHHHHHHHHHH--HHST------------T-SS-GGG-HHHHHHHHHHHHHHHHHH-HHHHHHHHH--
T ss_pred C-------chHHHHHHHHHHHHH--Hhhc------------ccccCccchHHHHHHHHHHHHHHhhhchHHHHHHHhcch
Confidence 0 122233555553322 1322 344556788889999999999999987 56777999999
Q ss_pred cchhhhhhhhcc--CCeeecc----CcCcchHHHHHHHhhcCCcchhhhhccc---ccccchHHHHHHHHHhhhhhHHHH
Q 000783 636 GFLWFREFYLES--SRVIQFP----IECSLPWMLVDHVLESQNAGLLESVMMP---FDIYNDSAQQALVVLKQRFLYDEI 706 (1287)
Q Consensus 636 S~LWfREfyLEl--~~~iQFP----Ie~SLPWILtdhiL~s~~~~l~E~ilyP---LdLYNDAA~~AL~~lk~qfLYDEI 706 (1287)
|.|||---.+|- ....++| =-++.|-|+..+. ..-. |.+ | -.|=++|+..|= -+.|||
T Consensus 536 s~lcfY~~~fe~~F~~~l~~psq~ry~iaf~~icshF~-~~~h----~lc--PEE~~~i~~~sl~~a~------~fLeei 602 (1116)
T PF09735_consen 536 SILCFYPRFFEKMFRQCLEGPSQPRYSIAFPLICSHFP-NCLH----ELC--PEEREHIGERSLSLAN------SFLEEI 602 (1116)
T ss_dssp GGGGG-HHHHHHHHHHHHHSHHHHGGGGHHHHHGGGGG-GG------TT---GGGHHHHHHHHHHHHH------HHHHHH
T ss_pred hheeehhHHHHHHHHHHHhccccchHHHHHHHHHHHHH-hhCC----ccC--ccchHHHHHHHHHHHH------HHHHHH
Confidence 999987766664 4455555 1133444444333 2212 222 2 113344444443 345789
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccCcc----cccccc-CCCC-c------ccCChh--------HHH-----
Q 000783 707 EAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPS----FLFSSD-NGEK-Y------SVQPMR--------LSA----- 761 (1287)
Q Consensus 707 EAEvnLCFDqlv~kLSd~iF~~yK~~Aas~lLd~~----f~~~~~-~~~~-~------~~~~~R--------y~~----- 761 (1287)
..++..|+.++.-....-.-.--=+.|| .++.+. .++.-. .|.. . ..+.+| ...
T Consensus 603 ak~~~~~i~~l~~e~~~L~~qLlP~~aA-~~~~~~~~~k~~k~~~k~~~~~~~~PG~ES~r~~r~~~t~ld~l~~~L~eL 681 (1116)
T PF09735_consen 603 AKQTSNVINQLCSEQCSLEDQLLPKHAA-RLISQARNKKKKKQKNKKGEPERVKPGAESYRKNRENLTMLDKLHQALTEL 681 (1116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGGGGH-HHHHHHTT-----------------TTGGG--S-TTS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHhhhcccccCcCCCCCCCCCchhccCCCchhhhhHHHHHHHHHHH
Confidence 9998888766543311111100001111 111110 000000 0100 0 011233 222
Q ss_pred ---HhhcccceecccccchhhHHHHHHHHHHHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCCc---H
Q 000783 762 ---LFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDR-FESQDLCAIVELEKLLDILKHTHELLSKDLSIDS---F 834 (1287)
Q Consensus 762 ---LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~ai~r-fEs~dl~~iveLe~ll~v~R~TH~LLse~L~Ldp---F 834 (1287)
+=..+.|++....+..+--+.|++-..|++.|-..+.- -+++++.-=-|++..|..--..=+.+..+.++|= |
T Consensus 682 c~aln~~~~I~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~~~~~~~~i~RPS~ll~~l~a~m~vlq~le~~v~iDvt~~~ 761 (1116)
T PF09735_consen 682 CSALNHFPSIVVFDHVFVPREYLREHLENRFRRALVSMVMYNPDDQEIARPSELLSSLRAYMSVLQSLENYVSIDVTRLF 761 (1116)
T ss_dssp HHHHTS-S-EEETTEEE-HHHHHHHHHHHHHHHHHHHHT--BTTTTB---HHHHHHHHHHHHHHHHHGGGTSS--HHHHH
T ss_pred HHHHhcCCCeEEEeeEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 22236889999999999999999999999998877752 2467787777888888777777777777888875 1
Q ss_pred -HHHHHHhhcCCCCCCcchHHHHHH----HHHHhhccc-ccccccccCcccccCCCCccCCCCCCCCCCCCCcceecchh
Q 000783 835 -RLILNEMQENISLVSFSSRLASQI----WSEMQSDFL-PNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQD 908 (1287)
Q Consensus 835 -~~ml~Ean~~~s~~s~~gRIt~hv----~~eL~~D~~-pNy~yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~ 908 (1287)
+.++.+....+ ....+.||..+ ..-|..|.- ++.+|..+-+.||..+.. ..|-..
T Consensus 762 ~~vLLqqtq~~d--~~g~~ti~~~yt~WYle~llr~~s~~~ivfSp~~~~FvS~~~~--------~~~f~a--------- 822 (1116)
T PF09735_consen 762 RNVLLQQTQPVD--SHGEKTITTLYTNWYLENLLRDASNGGIVFSPSRKCFVSSRPE--------QGPFNA--------- 822 (1116)
T ss_dssp HHHHHHTTSSB---TTS-B-HHHHHHHHHHHTHHHHHHTTSEEEETTTTEEEE-SSS-----------S-T---------
T ss_pred HHHHHHhcCCcc--cCCcccHHHHHHHHHHHHHHHhccCCcEEeecHHHhhhCCCCc--------cCCcCh---------
Confidence 22333333222 22334444433 223444433 445788888888855321 011001
Q ss_pred hHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccCccCCCccchhHHH
Q 000783 909 LNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMR 988 (1287)
Q Consensus 909 Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~ 988 (1287)
..|.-...++|+|+|+|+-|+..+-+.|+.++-+.++.|+..|..=++. ...-+..|..++.+.
T Consensus 823 ------------e~ytD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~elkk~v~~N~d~----L~~l~~~~~~~~~~~ 886 (1116)
T PF09735_consen 823 ------------EEYTDLNELRALVELIGPYGVKFLDENLMWHVASQVNELKKLVRQNRDV----LEQLRSNFDKPEKME 886 (1116)
T ss_dssp ------------HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHH-TT-HHHHH
T ss_pred ------------HHcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHhcCCHHHHH
Confidence 1234567789999999999999999999999999998877666532222 222344455566666
Q ss_pred HHHHHhccccccchHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 000783 989 LVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREV 1030 (1287)
Q Consensus 989 ~~~~~l~~~~~~dlk~~v~~~frElGN~i~~~~lle~aL~q~ 1030 (1287)
+.++.+. | -..|++-+..+|+++.|=.|+-+||+..
T Consensus 887 ---~~~~~l~--~-~d~vl~r~i~iG~iL~FR~ll~eAl~~V 922 (1116)
T PF09735_consen 887 ---ELLKQLT--D-LDNVLQRMIIIGVILSFRQLLQEALRDV 922 (1116)
T ss_dssp ---HHHTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhhc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222 2 3569999999999999999999998765
No 8
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=90.00 E-value=20 Score=42.77 Aligned_cols=280 Identities=15% Similarity=0.227 Sum_probs=155.8
Q ss_pred hhcccccccchHHHHHH---HHHhhhhhHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhhhhc-cCccccccccCCCCc
Q 000783 678 SVMMPFDIYNDSAQQAL---VVLKQRFLYDEIEAEVDHCFDI-FVSRLCETIFTYYKSWAASEL-LDPSFLFSSDNGEKY 752 (1287)
Q Consensus 678 ~ilyPLdLYNDAA~~AL---~~lk~qfLYDEIEAEvnLCFDq-lv~kLSd~iF~~yK~~Aas~l-Ld~~f~~~~~~~~~~ 752 (1287)
.+-|-+.-.+|++.-+. ..-+..-|++--+.|+.-|++. ++=.|+..|=+.-+=.+=+-+ ++++ .++
T Consensus 25 rl~y~~~Al~d~~~~l~~a~h~~~~~~l~~~~~~~i~~~l~~~~i~plc~~IE~dLRl~~Hshl~~~~~--------np~ 96 (350)
T PF14744_consen 25 RLPYLFSALSDCVPILKSARHLESPEDLLESYDKEIRECLQEEIIDPLCRDIETDLRLHIHSHLKLDDR--------NPF 96 (350)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccC--------CCC
Confidence 33333444455443332 2222344555555566666644 667777776654444333322 2221 122
Q ss_pred ccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000783 753 SVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSID 832 (1287)
Q Consensus 753 ~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~ai~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L~Ld 832 (1287)
+....++..+++-+-+++.|+-||+..-|++=+++.+..=-..|.. |-...-|. +++--+..+|.
T Consensus 97 ~~~~~dl~~~l~l~p~~~~~~~i~ik~~ve~yL~~tFYnLttva~h-----dwktY~eM----------r~lA~~kYgL~ 161 (350)
T PF14744_consen 97 KTGMRDLSRFLRLPPIRFFGRFIDIKEEVEHYLDKTFYNLTTVALH-----DWKTYEEM----------RNLAKQKYGLR 161 (350)
T ss_pred CcchHHHHHHHcCCcccccCeeeeHHHHHHHHHHHHHHhccccchh-----hHHHHHHH----------HHHHHHhcCCc
Confidence 2334677889988999999999999999999999988763333322 22222222 22222233443
Q ss_pred cHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccccccccccCcccccCCCCccCCCCCCCCCCCCCcceecchhhHHH
Q 000783 833 SFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSA 912 (1287)
Q Consensus 833 pF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A 912 (1287)
.-|.=+-. -.--.|--.+.|-.-+. -|..+|+||-.+|-|| +|.| ++|.|
T Consensus 162 l~d~~LP~------~tleQglDVL~ImrNI~-~FVs~Y~YNln~Q~Fv----------Er~S----------~sK~L--- 211 (350)
T PF14744_consen 162 LVDDHLPS------QTLEQGLDVLEIMRNIH-VFVSRYNYNLNNQIFV----------ERSS----------NSKHL--- 211 (350)
T ss_pred cccccCCC------cchhhhhHHHHHHhhhH-HHHHhcccccccceEE----------EecC----------CCcee---
Confidence 32211111 01224655666666664 6899999999999999 2222 33333
Q ss_pred HHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHH----------------HHHHHHHhCCcccCc
Q 000783 913 HQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEP----------------LIMGLQETLPKSIGL 976 (1287)
Q Consensus 913 ~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~----------------~v~~l~~~mP~~~~l 976 (1287)
..+|+.|++.-+|==|-+=+.=.|.-.-.-+++|++...+ |.++-++. ++
T Consensus 212 ---------~tI~i~hianSIRtHG~GImnTtVN~~YqfLrkKf~~fSqFL~De~IksrL~kd~r~~~e~k~~----~~- 277 (350)
T PF14744_consen 212 ---------NTINIRHIANSIRTHGTGIMNTTVNFAYQFLRKKFQTFSQFLFDEHIKSRLLKDIRFFRENKES----KD- 277 (350)
T ss_pred ---------eEeeHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhc----cC-
Confidence 4688999999999888765555555555555555543221 11222211 12
Q ss_pred cCCCccchhHHHHHHHHhccccccchHHHHH----HHHHHHhhHHHHHHHHHHHh
Q 000783 977 LHFDSGVTGCMRLVKEQLNWGTKSELKAEVL----HGIKEIGSVLYWMGLLDIVL 1027 (1287)
Q Consensus 977 p~~dyG~~g~~~~~~~~l~~~~~~dlk~~v~----~~frElGN~i~~~~lle~aL 1027 (1287)
..|-.+=+-.|-.+--+-.+.+|..+ -+ +..-|||||+-+.+|+-.+-
T Consensus 278 --~~Yp~erAekf~k~irkLG~~~dG~s-ylD~FR~LItqIGNA~gyVRmirsgg 329 (350)
T PF14744_consen 278 --QKYPYERAEKFNKGIRKLGLSDDGQS-YLDQFRQLITQIGNAMGYVRMIRSGG 329 (350)
T ss_pred --CCCCHHHHHHHHHHHHHcCCCCCcch-HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34444555555554433222333333 22 23458999999999998873
No 9
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=53.39 E-value=16 Score=46.37 Aligned_cols=100 Identities=5% Similarity=-0.090 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 000783 70 QEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGP 149 (1287)
Q Consensus 70 eeg~~~l~~LytYRscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~~~ 149 (1287)
+.++++.+++++|+.|.|..+.+..+-.++..+.+.......+|..-|..-+++||.-.....+-...+.+|...+....
T Consensus 131 kaie~f~~ev~rlch~ekr~dfVseaylltlg~finmfavldElknmK~svknd~st~rra~qfl~~msd~~a~~~~qnl 210 (1253)
T KOG3534|consen 131 KAIERFCEEVKRLCHAEKRKDFVSEAYLLTLGKFINMFAVLDELKNMKASVKNDFSTYRRAAQFLTAMSDTQAVQESQNL 210 (1253)
T ss_pred HHHHHHHHHHHHHHhHHhcchhHHHHHHHHHHHHHHHHHHHhHHHHhHHHhhhhHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 46889999999999999999999988888888888888888889999999999999766655554555666666655555
Q ss_pred chHHHHHHHHHHHHHHhhcc
Q 000783 150 TITHLWSMLKLLDVLVQLDH 169 (1287)
Q Consensus 150 se~~L~~La~iLdf~l~lD~ 169 (1287)
|.....|...--++.++++.
T Consensus 211 Smfla~~nki~~~l~~~l~~ 230 (1253)
T KOG3534|consen 211 SMFLATQNKIKDDLKLQLET 230 (1253)
T ss_pred HHHHHHhcchhhHHHHHHHh
Confidence 54444455555566666554
No 10
>PRK02866 cyanate hydratase; Validated
Probab=50.69 E-value=1.9 Score=45.61 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=36.6
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhc
Q 000783 1145 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEA 1209 (1287)
Q Consensus 1145 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~ 1209 (1287)
-||+|-++| ||-.+.- --.+|-||||.+ .+.||+.+|-|+..-+|
T Consensus 86 iYR~yE~v~-vYG~~~K---~~i~E~FGDGIM----------------SAIdf~~~v~k~~dp~G 130 (147)
T PRK02866 86 IYRFYEMVQ-VYGTTLK---ALIHEKFGDGIM----------------SAIDFKLDVDKVEDPKG 130 (147)
T ss_pred HHHHHHHHH-HhhHHHH---HHHHHHhCCcee----------------eeeeeceeeeeccCCCC
Confidence 599999999 7776544 267899999986 67999999999876664
No 11
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=50.40 E-value=1.8 Score=45.75 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=36.8
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhc
Q 000783 1145 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEA 1209 (1287)
Q Consensus 1145 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~ 1209 (1287)
-||+|-++| ||-.+.- --.+|-||||.+ .+.||+..|-|+..-+|
T Consensus 89 iYR~yE~v~-vYG~~~K---~~i~E~FGDGIM----------------SAIdF~~~v~k~~dp~G 133 (150)
T TIGR00673 89 MYRFYEMLQ-VYGTTLK---AVVHEKFGDGIM----------------SAIDFKLDVEKVADPGG 133 (150)
T ss_pred HHHHHHHHH-HhhHHHH---HHHHHHhCccee----------------eeeeeceeeeeecCCCC
Confidence 599999999 7776654 267899999986 67999999999876665
No 12
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=49.00 E-value=9.4 Score=40.59 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHhhcccccccccccCcccccCCCCc
Q 000783 850 FSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVP 886 (1287)
Q Consensus 850 ~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~ 886 (1287)
..||+++| |. .|||+|-||.-.-||+-+|..+
T Consensus 87 i~GrVtEq----la-Pffp~f~ynPkD~RfIGTPvD~ 118 (175)
T COG4741 87 ILGRVTEQ----LA-PFFPEFKYNPKDARFIGTPVDF 118 (175)
T ss_pred HhhhhHhh----hc-ccccCCCcCCccceeeCCCceE
Confidence 46888888 55 8999999999999999999764
No 13
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=42.09 E-value=3.8 Score=42.37 Aligned_cols=48 Identities=31% Similarity=0.398 Sum_probs=38.5
Q ss_pred hHhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhccc
Q 000783 1144 DFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAIS 1211 (1287)
Q Consensus 1144 ef~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~~~ 1211 (1287)
--||.|.-+| ||..|.. ..++|.||||.. .+.||+--|-||..-+|.+
T Consensus 88 ~iYRfYE~~q-vYG~~lK---~lihE~FGDGIm----------------SAIdf~ld~ek~~dpeG~~ 135 (151)
T COG1513 88 LIYRFYEMLQ-VYGTTLK---ALIHEKFGDGIM----------------SAIDFKLDVEKVADPEGGE 135 (151)
T ss_pred HHHHHHHHHH-HHchhHH---HHHHHHhccchh----------------hheeeeeeeeeccCCCCCc
Confidence 3699999999 7888765 378899999975 5689999999997666543
No 14
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=37.36 E-value=3.1 Score=38.56 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=32.6
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhh
Q 000783 1145 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVE 1208 (1287)
Q Consensus 1145 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d 1208 (1287)
-||++.++| +|-.... --.+|-||||.+ .+.||+..+-|+....
T Consensus 8 iYRlyE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~k~~dp~ 51 (69)
T cd00559 8 IYRFYEIVQ-VYGPTLK---ALIHEKFGDGIM----------------SAIDFKLDVDKVEDPG 51 (69)
T ss_pred eeehHHHHH-HhhHHHH---HHHHHHcCCcee----------------eeEEeeeeEEeccCCC
Confidence 478988888 4544332 257799999986 6789999988887553
No 15
>KOG1917 consensus Membrane-associated hematopoietic protein [General function prediction only]
Probab=33.55 E-value=2.3e+02 Score=38.00 Aligned_cols=99 Identities=22% Similarity=0.368 Sum_probs=72.1
Q ss_pred CCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhccccccc
Q 000783 922 GFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSE 1001 (1287)
Q Consensus 922 ~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~~~d 1001 (1287)
.|.-+..++|+++|+|+=|+-.+-+.|.=|+.+.|+.++.-|.+=++.+ .--|..+..+..++=---+|+.
T Consensus 826 e~SDl~ElrAlvel~GpYGvk~Lse~LmwHvasqV~elkklv~tn~d~L----~~~rssfdkpd~m~~~~~~l~~----- 896 (1125)
T KOG1917|consen 826 EYSDLSELRALVELLGPYGVKFLSEMLMWHVASQVNELKKLVVTNKDVL----EQARSSFDKPDRMKRLLKRLQI----- 896 (1125)
T ss_pred hcCCHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHhCCCHHHHHHHHHHHhH-----
Confidence 4556778899999999999999988888899999987776665555442 1223334445555544444443
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 000783 1002 LKAEVLHGIKEIGSVLYWMGLLDIVLREV 1030 (1287)
Q Consensus 1002 lk~~v~~~frElGN~i~~~~lle~aL~q~ 1030 (1287)
-..|+|-+-++|=++.|=-++-.||+..
T Consensus 897 -~D~VL~rmtiiGvil~Frdll~Ealr~V 924 (1125)
T KOG1917|consen 897 -ADTVLQRMTIIGVILSFRDLLHEALRDV 924 (1125)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2458999999999999999998888653
No 16
>PHA02888 hypothetical protein; Provisional
Probab=33.03 E-value=70 Score=30.72 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHHHHhhhcCCC-c-cccCCccCCCCCCCCchhHHHHHHH
Q 000783 565 APTAAQVHCLQFLIYEVVSGGN-L-RKPGGLFGNTGSEIPVNELKQLESF 612 (1287)
Q Consensus 565 ~Ps~tQL~ml~~li~~~~s~~~-~-~k~~g~f~~~r~~l~~~~~~~i~~F 612 (1287)
-||++|- .|+..++|.- . +...+-.. .++...++++..|+++
T Consensus 4 lpsscq~-----iin~ving~cffgkc~nkk~~-i~~~mt~~el~yiq~w 47 (96)
T PHA02888 4 LPSSCQH-----IINRVINGECFFGKCENKKLA-IKKAMTPQELAYIQEW 47 (96)
T ss_pred ccHHHHH-----HHHHHccceeeeeeccCccee-eecCCCHHHHHHHHHH
Confidence 4899993 4555555521 0 11111111 3577888888888877
No 17
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=30.59 E-value=3.7 Score=38.52 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=32.6
Q ss_pred HhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhhhhhhhhc
Q 000783 1145 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEA 1209 (1287)
Q Consensus 1145 f~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil~v~~~d~ 1209 (1287)
-||++.++| +|-.... --.+|-||||.+ .+.||..++-|+..-+|
T Consensus 12 iYR~yE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~k~~d~~G 56 (73)
T PF02560_consen 12 IYRLYEIVQ-VYGPAIK---ALIHEKFGDGIM----------------SAIDFKMDVEKVEDPKG 56 (73)
T ss_dssp HHHHHHHHH-HHHHHHH---HHHHHHT-SEEE----------------EEEEEEEEEEEEE-TTS
T ss_pred EeeeehhhH-hhCHHHH---HHHHHhhCcceE----------------EEeeEEEEEEEeeCCCC
Confidence 589999998 6665443 257799999987 56899999888865553
No 18
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=30.59 E-value=25 Score=37.63 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHhhcccccccccccCcccccCCCCcc
Q 000783 850 FSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPL 887 (1287)
Q Consensus 850 ~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs~~~~~ 887 (1287)
.-|+|++| |. .|+|.|-||.+.-||+-+|..|.
T Consensus 74 l~Gkv~Eq----la-P~lp~F~ynP~D~RFlG~PVD~I 106 (156)
T PF10107_consen 74 LKGKVSEQ----LA-PFLPEFPYNPKDARFLGSPVDFI 106 (156)
T ss_pred HcchhHHH----hh-hccCCCCCChhhheecCCCceEE
Confidence 56999998 44 88999999999999999998654
No 19
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=30.42 E-value=33 Score=36.41 Aligned_cols=35 Identities=37% Similarity=0.527 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHhhhhc
Q 000783 703 YDEIEAEVDHCFDIFVSRLCETIFT----YYKSWAASEL 737 (1287)
Q Consensus 703 YDEIEAEvnLCFDqlv~kLSd~iF~----~yK~~Aas~l 737 (1287)
-++||+.|+=||-++|+||+|..|. .-=.||..-+
T Consensus 34 v~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l 72 (153)
T PF08146_consen 34 VDEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGL 72 (153)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccC
Confidence 3699999999999999999999998 2235665533
No 20
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=20.20 E-value=1.9e+02 Score=28.04 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhcCCc---chHHHHHHHHHHHHHHHHHHhc
Q 000783 789 FRENLEFLFDRFESQDL---CAIVELEKLLDILKHTHELLSK 827 (1287)
Q Consensus 789 ~~~~l~~ai~rfEs~dl---~~iveLe~ll~v~R~TH~LLse 827 (1287)
..+.|+..+.++|+|++ .++-.+++-++..|.||+.|.+
T Consensus 15 ~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~~~L~~ 56 (81)
T COG1722 15 ALAELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQ 56 (81)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999 4999999999999999999864
Done!