Query 000783
Match_columns 1287
No_of_seqs 125 out of 127
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 17:05:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000783.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_553-557//hhsearch_pdb/000783hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_A Cytoplasmic FMR1-intera 1.0 1 1 3389.5 84.9 1220 2-1280 3-1252(1253)
2 3p8c_B NCK-associated protein 1.0 1 1 52.8 50.3 801 58-1030 10-927 (1128)
3 1dw9_A Cyanate lyase; cyanate 1.0 1 1 25.4 -4.2 60 1123-1209 79-138 (156)
4 2pfc_A Hypothetical protein RV 1.0 1 1 19.6 1.9 18 708-725 76-93 (183)
5 3uf7_A UDG, uracil-DNA glycosy 1.0 1 1 17.7 -2.7 18 174-191 38-56 (237)
6 3fci_A UDG, uracil-DNA glycosy 1.0 1 1 17.7 -2.7 18 174-191 38-56 (223)
7 1tue_A Replication protein E1; 1.0 1 1 16.5 1.1 52 920-986 18-69 (212)
8 1yku_A Hypothetical protein PX 1.0 1 1 13.9 2.2 20 708-730 114-133 (136)
9 4a94_C Carboxypeptidase inhibi 1.0 1 1 13.8 0.7 18 16-33 1-18 (53)
10 2xa0_A BCL-2, apoptosis regula 1.0 1 1 13.6 0.8 16 1169-1186 136-151 (207)
No 1
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=3389.47 Aligned_cols=1220 Identities=30% Similarity=0.508 Sum_probs=1155.0
Q ss_pred CCCCHHHH---HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHCCH---HHHHHHHHHHHHHHHHHHH
Q ss_conf 86588889---96314688988886556896217521588899985455210010434---6799999999999988999
Q 000783 2 AAVPVEEA---IAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLS---EDTKALNQLNTLIQEGKEM 75 (1287)
Q Consensus 2 ~~v~~~~a---v~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~~nf~Dr~a~~t~~~---eE~~~~~~ln~vL~eg~~~ 75 (1287)
+.||++|| |++|++|+||||||||||+|+||.| ++||||||+||+||+||++ ||+++|++||+||++|+++
T Consensus 3 ~~~~~~~a~~~v~~L~~~~l~d~qP~ie~~~~~~~y---~~~~~tnf~D~~a~~t~~~k~~eE~e~~~~v~~vL~eg~~~ 79 (1253)
T 3p8c_A 3 AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLY---QPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEY 79 (1253)
T ss_dssp --CCHHHHHHHHHHHTTCCC-------------------------------------CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 622099998677776347898888766678763365---32688761057778864677788999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99984031110115789888898805889989776532799889999999999999999998623511003788457999
Q 000783 76 ASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLW 155 (1287)
Q Consensus 76 l~~LyTyRscsraIpqa~sn~qpn~~eiye~t~~vL~PeV~KLk~f~~Fs~~a~~~l~~~l~~l~h~E~~~~~~se~~L~ 155 (1287)
+++|||||||||||||+++|+|||++|+||+||+||+|+|+|||+||+||.+++++||++|++||+.|++++++++++++
T Consensus 80 l~~LytYrgcsraIpqa~~n~qpn~~el~e~t~~vL~PeV~KLk~F~~Fs~~~~~~~~~~l~~L~~~e~~~~~~sqAl~~ 159 (1253)
T 3p8c_A 80 AVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLI 159 (1253)
T ss_dssp HHHHHTCCCSGGGSCCCCSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99988641027651757566798888999999998636999999999999999999999999865521123423289999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99999989986033335688777603678666755220037942279876110012023024899998861036884768
Q 000783 156 SMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDI 235 (1287)
Q Consensus 156 ~La~iLdf~l~lD~LK~~kasIqNDFS~YRRa~~r~~~~~~d~~~i~~E~~~LSlFlA~~~pil~~L~~~l~~i~~~edv 235 (1287)
||++||||+++||+||||||||||||||||||+++++ +++|++.+ +|+++||||||++|||+++|++++..|+||||+
T Consensus 160 qLa~iLdf~l~lD~LKn~k~sIqNDFS~YRRt~s~lk-~~~d~~~~-~E~~~lSlFlA~~~pil~~L~~~~~~I~~~edi 237 (1253)
T 3p8c_A 160 TLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLR-KMADPQSI-QESQNLSMFLANHNKITQSLQQQLEVISGYEEL 237 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT-CCCCHHHH-HHHHHHHHHHHSTTHHHHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHH-CCCCHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999998874123332034899998988874-16730778-899878899834338999999987067769899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHEEECEEEEEECCCCCCHHHHH-----HHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999999999841114466874311112341233356238888503578-----673234788642119951468986569
Q 000783 236 LQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLY-----KRVKINRLINIFKSDPVIPAFPDLHLS 310 (1287)
Q Consensus 236 L~tianvC~~mlE~~~y~~p~ekh~lLRVM~~~iiL~D~v~~~~~ni~-----Kri~l~r~~kifK~~pVVPlfGDm~i~ 310 (1287)
|+||||+|++|+|+++|++|+|||||||||||+|||||| +..||| |||||+|++||||++|||||||||||+
T Consensus 238 L~tmanvC~~mlE~~~y~~peEk~~lLRVMv~~iiL~D~---~~~ni~k~~~~Kri~l~rl~kIfK~~pVVPl~gDm~i~ 314 (1253)
T 3p8c_A 238 LADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDG---SVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIE 314 (1253)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSS---SSCCHHHHHHTTSSCHHHHHHHHHHSCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEECC---CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999997445446826663544023204677348---70114566431114678999998718854476765058
Q ss_pred HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 78999631133442210001356899999994000000003687630356785587999999998668887311797614
Q 000783 311 PAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADI 390 (1287)
Q Consensus 311 ~~s~ik~~~~y~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~y~i~~~l~~ir~~h~~~~~~la~~~n~~~~~~~~~~~d~ 390 (1287)
|++|+|+++||+.++ |+|++ +++ ..++||+|++||++||++|++|+++||+++|++++++.. +.|.
T Consensus 315 p~s~lk~~~~~~~~~---s~wp~---~~~-------~~~~~y~i~~~l~~~r~~~~~~~~~la~~~n~~~~~~~~-~~~~ 380 (1253)
T 3p8c_A 315 LARYIKTSAHYEENK---SRWTC---TSS-------GSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSG-RQEA 380 (1253)
T ss_dssp THHHHHTSTTTGGGG---GGCST---TCC--------------CHHHHHHHHHHHHHHHHHHHHTC-------------C
T ss_pred HHHHHHHCCCCCCCH---HCCCC---CCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC
T ss_conf 999985488865320---01889---987-------754115098615899999999999999875178761120-1357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 56686433138999999898766589999876522046889999998844577730358888607997889999999999
Q 000783 391 EWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSY 470 (1287)
Q Consensus 391 ~~~~~~~~~~~~~~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIam 470 (1287)
.++..+++++|+++++||||||+||++|||||||||+||+ |++ .|++||+++++||||||||||++||+||||+|||
T Consensus 381 ~~s~~~~~~~~~~~l~GlqlLS~Wt~~V~Eq~awKl~~P~-~~~--~n~~~p~~a~~YEravRYNYs~~Er~alve~Iam 457 (1253)
T 3p8c_A 381 QKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPT-DKY--SNKDCPDSAEEYERATRYNYTSEEKFALVEVIAM 457 (1253)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CTT--TCTTCCTTSCHHHHHTGGGCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCC--CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 7770466799999999999999999999999999971888-876--5545886214788889808898999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 9999997755349999999999999999999998999999983042139-999999989775321079999034310123
Q 000783 471 IKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDL-SRILSDMRTLSADWMANNSRPEAEQQSMHH 549 (1287)
Q Consensus 471 IK~l~~ll~~~e~~~~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~-~~il~~iR~~~~Dw~~g~~~~~~~~~~~~~ 549 (1287)
||||+++|.++|++++++||++||+++|+|||++|++|||+|.||||++ .++|++||++||||++|.+|+++++.++.+
T Consensus 458 IK~l~~ll~~~e~~~~~~i~~~I~~evQ~Fvq~~L~~~L~~a~kkKK~~~~~iL~~iR~~~~DW~~~~~p~~~~~~k~~k 537 (1253)
T 3p8c_A 458 IKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFNDPALRGEK 537 (1253)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHTTCHHHHHHHHHHHHHHCCCSSSSCCTTCHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999987999999999999999999999999999999986145678999999999985760388887652002577
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 57788885456777797766799999999866239975556886678899999110799999998522458640817789
Q 000783 550 VGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATV 629 (1287)
Q Consensus 550 ~~~~~~~~~~~~r~v~Ps~tQL~ml~~li~~~~~~~~~~k~~g~f~~~~~~l~~~~~~~i~~F~~~s~~~~~LL~~s~tl 629 (1287)
+.+.+.++.+|+|+||||+|||||+|+|+++++++++ +|.+ .+||+|+++++++|++||++|+||++||||++||
T Consensus 538 ~~~~~~~~~~~~R~v~PsstQL~~lRt~l~sli~~~s----~~~~-~~~k~l~~~~~~~i~~F~~~s~~~~~LL~~~~tl 612 (1253)
T 3p8c_A 538 DPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS----GSKK-TLRSSLEGPTILDIEKFHRESFFYTHLINFSETL 612 (1253)
T ss_dssp CC---CCCCCCCCSCCCCHHHHHHHHHHHHHHHC----------C-CTTTTSCHHHHHHHHHHHHHGGGHHHHHTHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC----CCCC-CCCCCCCHHHHHHHHHHHHHHCCHHHHHCHHHHH
T ss_conf 8777767445667899977799999999999836556----6655-5424488768999999999751289885649899
Q ss_pred HHHCCCCCHHHHHHHHCC--CCEEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 862033210355553136--881213676761079899886208841023110221113157999999985434389999
Q 000783 630 STLTDLGFLWFREFYLES--SRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIE 707 (1287)
Q Consensus 630 ~~~~DLS~LWfREfyLEl--~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qfLYDEIE 707 (1287)
++|||||||||||||||+ |++||||||||||||||||||++++|+|+|+||||||||||||++||++|||||||||||
T Consensus 613 ~~~~DLS~LWfREfyLElt~~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qfLYDEIE 692 (1253)
T 3p8c_A 613 QQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIE 692 (1253)
T ss_dssp HHHSCCGGGSCCHHHHHHTTTSCSSCCGGGCHHHHHHHHHHHHTCGGGTTTHHHHHTHHHHHHHHHHHTSCBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98633788899999875235842772511276299999787269813688785006677289999999998876289999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCC-CHHHHHHHHCCCCEECCCCCCHHHHHHHHH
Q ss_conf 9885279999999999999999987632104920101124-78875569-702899863036133351211224999999
Q 000783 708 AEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD-NGEKYSVQ-PMRLSALFKMTRVKLLGRSINLRSLIAERM 785 (1287)
Q Consensus 708 AEvnLCFDqlv~kLsd~iF~~yK~~Aas~lLd~~f~~~~~-~~~~~~~~-~~Ry~~LL~QrhvqLLGRsIDL~~LItQRl 785 (1287)
||||||||||||||||+||+|||++|+|++|||+|+++|+ .|.++..| ++||++|||||||||||||||||+||+||+
T Consensus 693 AEvnLCfDqlv~kLSd~iF~~yK~~Aas~lLD~~f~~e~~~~~~~~~~p~~~Ry~~ll~QrhvqLLGRsIDL~~LI~QRl 772 (1253)
T 3p8c_A 693 AEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRV 772 (1253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCCCCCCCCCCCHHHHTCSCEEETTEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99969899999999999999999999987448777877763365546884145899999878888176411999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999989999988620895339989999999999999875179989089999996227887786227999999998521
Q 000783 786 NKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSD 865 (1287)
Q Consensus 786 n~~~~~~le~ai~rfEs~dl~~iveLe~ll~v~r~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D 865 (1287)
|++|+++||+||+||||+|||||||||++|+++|+||+||||||+|||||+||+|||||+| ||+||||+||||||++|
T Consensus 773 n~~~~~~Le~aI~rFEs~dL~~iveLe~ll~i~r~tH~LLse~l~Ld~F~~ml~Ean~~vs--s~~gRIt~hv~~eL~~D 850 (1253)
T 3p8c_A 773 SAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVS--APYGRITLHVFWELNYD 850 (1253)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHTTCSS--SSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC--CCCHHHHHHHHHHHHCC
T ss_conf 9999999999999985258730999999999999999999971798989999998606888--74026999999998603
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 12332235567641038988667788999999987401131426999999870037877802699999972899979999
Q 000783 866 FLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLI 945 (1287)
Q Consensus 866 f~pNy~yn~~T~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~ly~~F~G~pH~~ai~RLLg~~gia~v~ 945 (1287)
|+||||||++||||||++.+|+++++|+++|+++|+|+||||+||+||++++++|++|||.|||+||||||||+|||||+
T Consensus 851 f~PNy~yn~~T~RFvr~~~~~~~~~~R~~~P~~~~~~~~Gsk~ln~A~~~~~~~~~~FvG~~H~~ai~rLlg~~~l~~vi 930 (1253)
T 3p8c_A 851 FLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVM 930 (1253)
T ss_dssp HHHHEEEETTTTEEEECCGGGCCCCCCCCCCCCCGGGTTSSHHHHHHHHHHGGGGGSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 24441103765433378766567556788999760130044999999999975355655848999999992888769999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999997773-5899999997378544866777660558999999714366-6411799998999776699999999
Q 000783 946 RALLDHMSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGT-KSELKAEVLHGIKEIGSVLYWMGLL 1023 (1287)
Q Consensus 946 ~ell~~~~~~i~~-~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~L~~~~-~~dlk~~v~q~frElGN~i~~~~ll 1023 (1287)
+||+++++++|++ ++|||++++++|||+||||++|||++|||+||++||+|++ |+|||++|||+|||+||+|+||++|
T Consensus 931 ~ell~~~~~~i~~~~~~yv~~l~~~mPk~~klP~~dyGs~G~~~~y~~~L~~~~~y~dlk~ev~q~fReiGN~i~f~~lL 1010 (1253)
T 3p8c_A 931 EELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLI 1010 (1253)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCSBCCCCCGGGCHHHHHHHHHHHTHHHHSCTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998999999999739552079975578648999999987657308377999999999986899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC---CCCC----CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98852354688875204468877988---8554----4578999813444567778652299999983143666866587
Q 000783 1024 DIVLREVDTTHFMQTAPWLGFLPGAD---GQIS----YHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAA 1096 (1287)
Q Consensus 1024 e~aL~qee~~d~~~aaPf~gi~P~~~---~~~~----~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~A~~~ 1096 (1287)
|++|+|+|++||+|||||+||+|+++ ||++ ++++.||+|+. .+++++++|++. | +.+|+||
T Consensus 1011 d~aL~q~e~~~~~~aaPf~gi~P~~~~~~~~~~~~k~~~l~~k~~~~~------~v~~~~~~~~~~---q---~~~a~ea 1078 (1253)
T 3p8c_A 1011 EQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLH------LVPLIERLGTPQ---Q---IAIAREG 1078 (1253)
T ss_dssp HHHHHHHHHHHHHHHGGGGTCCCCCCCCTTCCHHHHHHHHHHHTGGGC------HHHHHHHHSCHH---H---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC------CCHHHHHCCCHH---H---HHHHHHH
T ss_conf 998638999999961661478798777764351034678885257631------015776228688---9---9999887
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCCC
Q ss_conf 56432003640-179999999999970048865468-9987033134620766442120012201799999854324785
Q 000783 1097 DLLYKANMNTG-SVLEYALAFTSAALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDS 1174 (1287)
Q Consensus 1097 dll~k~rl~~g-sife~~L~~~~~~L~~~~~~W~g~-p~nGv~~id~~~eFhRlwSalQf~~c~p~~~~e~~~~e~fGDG 1174 (1287)
|+||||||||| |+||++|+|+|++|++ ++|+|| |+|||||||||+|||||||||||+||+|++++|+++||+||||
T Consensus 1079 dlL~k~rl~~glSife~~L~~~~~~L~~--~~W~g~~P~nGvi~id~~~eF~RlwSalQf~~c~p~~~~e~~~~e~FGDg 1156 (1253)
T 3p8c_A 1079 DLLTKERLCCGLSMFEVILTRIRSFLDD--PIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDG 1156 (1253)
T ss_dssp HHHHHCCGGGTEESHHHHHHHHHTTCCS--TTTTCSCCTTSSCCSSBCCSHHHHHHHHHHHHHSCCCTTSCCHHHHHBTH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC
T ss_conf 7875665504624999999999987271--12579999997574000016999999877762156788877679884675
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 53248899997322333322241012344454101367877789877768899999999999976789999751088986
Q 000783 1175 VAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLED 1254 (1287)
Q Consensus 1175 l~WaGctiI~LLgQq~rFe~lDF~yHiL~v~~~d~~~~~~~~~~p~~~~~l~~~v~~~r~~~~LN~~iFsiL~~~~p~~d 1254 (1287)
|+|||||||+|||||+|||+||||||||||+++|+||+. +.|++|++||+||||||+|||||||||++|||..|
T Consensus 1157 l~WaGctiI~LLGQq~rFE~lDF~YHiL~V~~~d~k~~~------~~g~~l~~~~~~~r~~~~LN~~iFs~L~~~~~~~~ 1230 (1253)
T 3p8c_A 1157 LHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEI------IKNVPLKKMVERIRKFQILNDEIITILDKYLKSGD 1230 (1253)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCHHHHHHHHHHHHCCCCE------ETTEEHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 201178999983306662476569888688874146655------56754999999999999988799999998658987
Q ss_pred CHHHHHCCCCCCCCCCC---CCCCHHHHH
Q ss_conf 00111015899743455---787634641
Q 000783 1255 KTACAIKQSGAPLHRIK---FENTVSAFE 1280 (1287)
Q Consensus 1255 ~~~~~~~~~~~~~~~~~---~~~~~s~~~ 1280 (1287)
.. +.|++||| ||+|+|.+.
T Consensus 1231 ~~-------~~~~~~vr~f~pp~~~~~~~ 1252 (1253)
T 3p8c_A 1231 GE-------GTPVEHVRCFQPPIHQSLAS 1252 (1253)
T ss_dssp -------------CCCCCCCCCCCTTC--
T ss_pred CC-------CCCCCCCCCCCCCCCCCCCC
T ss_conf 66-------77533301479997523356
No 2
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=52.76 Aligned_cols=801 Identities=15% Similarity=0.189 Sum_probs=409.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CC----------------------CCCCCCCCCCCCCC----HHHHHHHHHH
Q ss_conf 799999999999988999999840311-10----------------------11578988889880----5889989776
Q 000783 58 DTKALNQLNTLIQEGKEMASVLYTYRS-CV----------------------KALPQLPNSMKHSQ----ADLYLETYQV 110 (1287)
Q Consensus 58 E~~~~~~ln~vL~eg~~~l~~LyTyRs-cs----------------------raIpqa~sn~qpn~----~eiye~t~~v 110 (1287)
+.++-.++-.+-+.|++++.-||+-+- |+ |-.|......+... .....+..+.
T Consensus 10 ~~KlaEkl~iLn~r~~g~LtrlYnikk~~~~~k~kp~fl~dk~~e~~iK~i~kKFP~id~~~~~~~~~~~~~~~~ei~~~ 89 (1128)
T 3p8c_B 10 QQKLAEKLTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRKFPAVETRNNNQQLAQLQKEKSEILKN 89 (1128)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSCGGGTCTTTHHHHHHHHHHTTCCC----CCTTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 65366787569977778999999998750599878876771326999999970499987523421226788779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCHHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 5327998899999999999999999986235110037-88457999---9999998998603333568877760367866
Q 000783 111 LDLEMSRLREIQRWQASAASKLAADMQRFSRPERRIN-GPTITHLW---SMLKLLDVLVQLDHLKNAKASIPNDFSWYKR 186 (1287)
Q Consensus 111 L~PeV~KLk~f~~Fs~~a~~~l~~~l~~l~h~E~~~~-~~se~~L~---~La~iLdf~l~lD~LK~~kasIqNDFS~YRR 186 (1287)
|.|...-+.+.|+|++.+.+.+-..-...++.+-..+ .-...+|. +++++.-|+-.++..|+.- ..|..
T Consensus 90 L~~yY~tf~Dl~dfrd~~~elL~~i~s~~~~ldi~~N~~lT~~yLdL~v~yvkv~lllsri~drK~ll-------~lyn~ 162 (1128)
T 3p8c_B 90 LALYYFTFVDVMEFKDHVCELLNTIDVCQVFFDITVNFDLTKNYLDLIITYTTLMILLSRIEERKAII-------GLYNY 162 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHH
T ss_conf 98999999999999999999999865045664123489999999999999999999998503199999-------99999
Q ss_pred HHHHHHHCCCCCHHHHHHHHH-CCHHCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHH------HHCCCCCC----
Q ss_conf 675522003794227987611-001202302489999886103688-476899999999984------11144668----
Q 000783 187 TFTQVSVQWQDTDSMREELDD-LQIFLSTRWAILLNLHVEMFRVNN-VEDILQVLIVFAVES------LELDFALL---- 254 (1287)
Q Consensus 187 a~~r~~~~~~d~~~i~~E~~~-LSlFlA~~~pil~~L~~~l~~i~~-~edvL~tianvC~~m------lE~~~y~~---- 254 (1287)
+....+.. .++ .-++ -+|+..+ .+-++.|.+...++.. ..+.|..+.-++... .-+...++
T Consensus 163 a~~~~~~~-~ep-----sy~RL~q~i~~y-d~PlkkL~eef~p~~~~I~~aL~Sl~~~~~~r~~~a~~wR~~~~LSl~~~ 235 (1128)
T 3p8c_B 163 AHEMTHGA-SDR-----EYPRLGQMIVDY-ENPLKKMMEEFVPHSKSLSDALISLQMVYPRRNLSADQWRNAQLLSLISA 235 (1128)
T ss_dssp HHHTTSSS-CCT-----THHHHHHHHHHT-SSHHHHHHHHTTTTHHHHHHHHHGGGGTHHHHSCCHHHHHHTTTTCSSSS
T ss_pred HHHHHCCC-CCC-----CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
T ss_conf 99997388-998-----779999999984-13888887888777889999999858999871674998863686787678
Q ss_pred C---------CCCHHHH-------EEECEEEEEECCCCCCHHHHHH-HHCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7---------4311112-------3412333562388885035786-732347886421199514689865697899963
Q 000783 255 F---------PERHILL-------RVLPVLVVLATSSEKDSESLYK-RVKINRLINIFKSDPVIPAFPDLHLSPAAILKE 317 (1287)
Q Consensus 255 p---------~ekh~lL-------RVM~~~iiL~D~v~~~~~ni~K-ri~l~r~~kifK~~pVVPlfGDm~i~~~s~ik~ 317 (1287)
| ++....+ |-..++..+. |.. ... .-.++-....++...|+|||+|-.+.+-.+++.
T Consensus 236 P~~~~~pa~~d~~~~ells~e~m~~WIifg~L~c-p~~-----L~~~~~~~~l~~~aL~~~~vl~LfRdevi~iH~~~q~ 309 (1128)
T 3p8c_B 236 PSTMLNPAQSDTMPCEYLSLDAMEKWIIFGFILC-HGI-----LNTDATALNLWKLALQSSSCLSLFRDEVFHIHKAAED 309 (1128)
T ss_dssp GGGTTSCCCCTTHHHHHSCHHHHHHHHHHHHHHT-THH-----HHHCHHHHHHHHHHHTTCSEEEEETTEEEEHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEEEC-CHH-----HCCCHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHH
T ss_conf 1651786565522088873989988780211224-434-----3238139999999951497787742200329899999
Q ss_pred HCHHHHHHHH-HCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHH
Q ss_conf 1133442210-0013568999999940000000036876303567855879999999986688873-1179761456686
Q 000783 318 LSMYFQKFSA-QTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLL-KSTDNADIEWCKE 395 (1287)
Q Consensus 318 ~~~y~~~~~~-~~~~~~~p~~~~~~~~e~~~~~~~y~i~~~l~~ir~~h~~~~~~la~~~n~~~~~-~~~~~~d~~~~~~ 395 (1287)
+++..+. +.+.. + .+|+.+ + -+.+-+.+..|...|+...-+ ++... .+.++.-. +
T Consensus 310 ---~~~s~K~y~K~v~------~--ikE~~~----~-A~~~a~~~HreRR~~LR~~Lk---el~~i~~DqPgLLg-P--- 366 (1128)
T 3p8c_B 310 ---LFVNIRGYNKRIN------D--IRECKE----A-AVSHAGSMHRERRKFLRSALK---ELATVLSDQPGLLG-P--- 366 (1128)
T ss_dssp ---HHTTCGGGTTHHH------H--HHHHHH----H-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCGGGGT-T---
T ss_pred ---HHHHHHHHHHHHH------H--HHHHHH----H-HHHHCCHHHHHHHHHHHHHHH---HHHHHHHCCCCCCC-H---
T ss_conf ---9999876425699------9--999999----9-998475334999999999999---99999704975457-0---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43313899999989876658999987652204688999999884457773035888860799788999999999999999
Q 000783 396 VKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIG 475 (1287)
Q Consensus 396 ~~~~~~~~~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~ 475 (1287)
...+++.|+-+ -.+-.-|=+-|-.+ .+ .+ +.+||- -.-+.|+|-.+--+.
T Consensus 367 ----K~~~v~~aLs~-------ArdEV~W~~rH~~~-~p---kk----~~~d~~-----------D~~i~eLLf~m~eLr 416 (1128)
T 3p8c_B 367 ----KALFVFMALSF-------ARDEIIWLLRHADN-MP---KK----SADDFI-----------DKHIAELIFYMEELR 416 (1128)
T ss_dssp ----THHHHHHHHHH-------HHHHHHHHHHHHHH-SC---CS----STTTTC-----------CTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH-------HHHHHHHHHHCCCC-CC---CC----CCCCCH-----------HHHHHHHHHHHHHHH
T ss_conf ----58999999999-------99999999970566-88---88----833210-----------314899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 97755349999999999999999999998999999983042139999999989775321079999034310123577888
Q 000783 476 SMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESR 555 (1287)
Q Consensus 476 ~ll~~~e~~~~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~Dw~~g~~~~~~~~~~~~~~~~~~~ 555 (1287)
.++.+...++...--.++.. |--..|.+.++....=..+.+.|++++-.+... -. +.... ++
T Consensus 417 ~Lv~k~~~vIqrYy~qyLs~----~Da~~L~~~iq~l~~~p~ees~i~ss~~~tl~~----L~-~~q~e----~~----- 478 (1128)
T 3p8c_B 417 AHVRKYGPVMQRYYVQYLSG----FDAVVLNELVQNLSVCPEDESIIMSSFVNTMTS----LS-VKQVE----DG----- 478 (1128)
T ss_dssp HHHHHSHHHHHHHHHHHHHH----THHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHT----CC-HHHHH----TT-----
T ss_pred HHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CC-HHHHC----CC-----
T ss_conf 99999999999999999853----237889999987406988899999999999871----89-65404----47-----
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHCC
Q ss_conf 85456777797766799999999866239975556886678899999110799999998522458640817-78986203
Q 000783 556 GNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYT-ATVSTLTD 634 (1287)
Q Consensus 556 ~~~~~~r~v~Ps~tQL~ml~~li~~~~~~~~~~k~~g~f~~~~~~l~~~~~~~i~~F~~~s~~~~~LL~~s-~tl~~~~D 634 (1287)
..+ .-+.-.|.-+|.+-.- |.. +..+.=.+...|-.+.+...||..+.|.- +.|++-||
T Consensus 479 -~~~-----Df~~lRlDW~Rlqa~~--S~~------------~~~l~l~~~~~l~~~mN~~~fhsk~VD~lde~L~e~sd 538 (1128)
T 3p8c_B 479 -EVF-----DFRGMRLDWFRLQAYT--SVS------------KASLGLADHRELGKMMNTIIFHTKMVDSLVEMLVETSD 538 (1128)
T ss_dssp -CCC-----CCHHHHHHHHHHHHHH--HST------------TCSSCGGGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred -CCC-----CCHHHHHHHHHHHHHH--HCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -888-----8289999999999999--713------------46767310078999988999999888559999998455
Q ss_pred CCCHHHHHHHHC-C-CCEEECC----CCCCCHHHHHHHHHHCCCCCHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 321035555313-6-8812136----7676107989988620884102311022---11131579999999854343899
Q 000783 635 LGFLWFREFYLE-S-SRVIQFP----IECSLPWMLVDHVLESQNAGLLESVMMP---FDIYNDSAQQALVVLKQRFLYDE 705 (1287)
Q Consensus 635 LS~LWfREfyLE-l-~~~iQFP----Ie~SLPWILtdhiL~s~~~~l~E~ilyP---LdlYNDAA~~AL~~lk~qfLYDE 705 (1287)
||.|||-.-.+| + .+..++| =-++.|-|...+.-.. .+ +.| --|=++|..+|-.- .||
T Consensus 539 Ls~l~FY~~~~~~~F~~cl~~p~q~ry~~af~~ics~F~~~~-h~------~cPEE~~~i~~~sl~~~~~f------Le~ 605 (1128)
T 3p8c_B 539 LSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFMSCT-HE------LCPEERHHIGDRSLSLCNMF------LDE 605 (1128)
T ss_dssp CGGGGGCHHHHHHHHHHHHHSHHHHTTTTHHHHHGGGGGGGC-CT------TCGGGHHHHHHHHHHHHHHH------HHH
T ss_pred HHHEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHCCC-CC------CCHHHHHHHHHHHHHHHHHH------HHH
T ss_conf 322210158999999997357432018999999971212047-86------68667999988999999999------999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCC-------CCCCCCCHH--------HHH--
Q ss_conf 9998852799999---9999999999998763210----492010112478-------875569702--------899--
Q 000783 706 IEAEVDHCFDIFV---SRLCETIFTYYKSWAASEL----LDPSFLFSSDNG-------EKYSVQPMR--------LSA-- 761 (1287)
Q Consensus 706 IEAEvnLCFDqlv---~kLsd~iF~~yK~~Aas~l----Ld~~f~~~~~~~-------~~~~~~~~R--------y~~-- 761 (1287)
|..++.-|...+. ..|++|.- -|. ||..+ ..|.-+..-..| +.-..+.+| ...
T Consensus 606 ia~~~~~~i~~i~~~~~~l~~qLl--P~~-aA~~i~~~~~~k~kk~~~~k~~~~~~~PG~ES~r~~r~~~t~~dkl~~~L 682 (1128)
T 3p8c_B 606 MAKQARNLITDICTEQCTLSDQLL--PKH-CAKTISQAVNKKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTAL 682 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS--GGG-GHHHHHHHTTC--------------CCTTGGGCCSCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--HHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999999866876018--799-99999999987513556766777889998214566758786589999999
Q ss_pred ------HHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf ------863036133351211224999999999999899999886--208953399899999999999998751799890
Q 000783 762 ------LFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRF--ESQDLCAIVELEKLLDILKHTHELLSKDLSIDS 833 (1287)
Q Consensus 762 ------LL~QrhvqLLGRsIDL~~LItQRln~~~~~~le~ai~rf--Es~dl~~iveLe~ll~v~r~TH~LLse~L~Ldp 833 (1287)
+=..+.+.+.-..+--+--+.|++-..+++.+-..+. | +++++.-=-|++..|..-=-.=+.+..+..+|-
T Consensus 683 teLc~aln~~~~i~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~-~~~~~~~i~RPSell~~l~a~m~vlq~~e~~v~iDv 761 (1128)
T 3p8c_B 683 SELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKSIVGMTM-YNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDI 761 (1128)
T ss_dssp HHHHHHHTSCSCEEETTEEECHHHHHHHHHHHHHHHHHHHHTT-CBTTTTBCCCHHHHHHHHHHHHHHHHHGGGTSSCCH
T ss_pred HHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999986568871688635561999999999999999999854-688766668869999999999999998998814129
Q ss_pred HH----HHHHHHHCCCCCCCCCHHHH---HHHHHHHHHCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89----99999622788778622799---999999852112------332235567641038988667788999999987
Q 000783 834 FR----LILNEMQENISLVSFSSRLA---SQIWSEMQSDFL------PNFILCNTTQRFIRSSKVPLASVQKPSVPYAKP 900 (1287)
Q Consensus 834 F~----~ml~Ean~~~s~~s~~gRIt---~hv~~eL~~Df~------pNy~yn~~T~RFvrs~~~~~~~~~r~~~P~~~~ 900 (1287)
=. .++.+.+..++ +|.-| .=.-|.+ |++ ++.+|.-+-+.||..+. + +.+|- .+
T Consensus 762 t~~i~~vLLqqtq~~D~----~G~~tit~~yt~WYl--e~llr~~s~~~iv~sp~~~~Fvs~~~------~-g~~~f-~A 827 (1128)
T 3p8c_B 762 TRVFNNVLLQQTQHLDS----HGEPTITSLYTNWYL--ETLLRQVSNGHIAYFPAMKAFVNLPT------E-NELTF-NA 827 (1128)
T ss_dssp HHHHHHHHHHTTSSBCT----TSCBCHHHHHHHHHH--HTHHHHHHTTSEEEETTTTEEEECSS------S-CCCCS-CT
T ss_pred HHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHH--HHHHHHCCCCCEEECCHHHHHHCCCC------C-CCCCC-CH
T ss_conf 99999999982775103----798507999999999--99997546786687547887646898------7-88985-87
Q ss_pred CCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 40113142699999987003787780269999997289997999999999999977735899999997378544866777
Q 000783 901 SFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFD 980 (1287)
Q Consensus 901 ~~l~Gsk~Ln~A~~~i~~ly~~F~G~pH~~ai~RLLg~~gia~v~~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~d 980 (1287)
+ .|.-...++|+|+|+|+-|+-.+-+.|+.++-+.++.++-.|..=++++ ...+.-
T Consensus 828 -----------------E---~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~~N~~~L----~~lr~~ 883 (1128)
T 3p8c_B 828 -----------------E---EYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVL----TQMRTS 883 (1128)
T ss_dssp -----------------H---HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHHHC
T ss_pred -----------------H---HCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_conf -----------------7---6189999999999967456899999999999999999999999839999----999985
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66055899999971436664117999989997766999999999885235
Q 000783 981 SGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREV 1030 (1287)
Q Consensus 981 yG~~g~~~~~~~~L~~~~~~dlk~~v~q~frElGN~i~~~~lle~aL~qe 1030 (1287)
+..+..+ .+.|+-+. | -..+++-.-.+|+++-|=.++-.||+..
T Consensus 884 ~~~~~~m---~~~lk~l~--~-~d~~l~r~~~iG~iL~FR~ll~eAl~~V 927 (1128)
T 3p8c_B 884 FDKPDQM---AALFKRLS--S-VDSVLKRMTIIGVILSFRSLAQEALRDV 927 (1128)
T ss_dssp TTCHHHH---HHHHTTCC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5888999---99999601--2-9899999999999999999999999999
No 3
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=1.00 E-value=1 Score=25.37 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 04886546899870331346207664421200122017999998543247855324889999732233332224101234
Q 000783 1123 KYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1202 (1287)
Q Consensus 1123 ~~~~~W~g~p~nGv~~id~~~eFhRlwSalQf~~c~p~~~~e~~~~e~fGDGl~WaGctiI~LLgQq~rFe~lDF~yHiL 1202 (1287)
.+|..|...||+. --.||+|-++| +|..+.- -..+|-||||.+ .+-||+-.|-
T Consensus 79 P~rg~~~~~~ptd-------P~iYR~yE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~ 131 (156)
T 1dw9_A 79 PLRGCIDDRIPTD-------PTMYRFYEMLQ-VYGTTLK---ALVHEKFGDGII----------------SAINFKLDVK 131 (156)
T ss_dssp CCCCCCSSSSCCS-------HHHHHHHHHHH-HHHHHHH---HHHHHHTCSEEE----------------EEEEEEEEEE
T ss_pred CCCCCCCCCCCCC-------CEEHHHHHHHH-HHHHHHH---HHHHHHCCCCEE----------------EEEEEEEEEE
T ss_conf 9678899989999-------81023899998-7568999---999877076567----------------6655004667
Q ss_pred HHHHHHC
Q ss_conf 4454101
Q 000783 1203 NVAEVEA 1209 (1287)
Q Consensus 1203 ~v~~~d~ 1209 (1287)
|+..-+|
T Consensus 132 k~~dp~G 138 (156)
T 1dw9_A 132 KVADPEG 138 (156)
T ss_dssp EEECTTS
T ss_pred EECCCCC
T ss_conf 6218998
No 4
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=19.58 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 988527999999999999
Q 000783 708 AEVDHCFDIFVSRLCETI 725 (1287)
Q Consensus 708 AEvnLCFDqlv~kLsd~i 725 (1287)
-|.|+||.|+.|-+=.+.
T Consensus 76 VEfniCfNQlaY~l~A~~ 93 (183)
T 2pfc_A 76 VELILCFNQLAYSAFAPA 93 (183)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHH
T ss_conf 642222788999999999
No 5
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=1.00 E-value=1 Score=17.72 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=7.6
Q ss_pred CCCCCCCHHHHHHH-HHHH
Q ss_conf 88777603678666-7552
Q 000783 174 KASIPNDFSWYKRT-FTQV 191 (1287)
Q Consensus 174 kasIqNDFS~YRRa-~~r~ 191 (1287)
=|...+=|+.++-+ +..+
T Consensus 38 yP~~~~iF~af~~~p~~~v 56 (237)
T 3uf7_A 38 YPPQKDVFNAFRFTELGDV 56 (237)
T ss_dssp ESCGGGTTHHHHHSCGGGC
T ss_pred CCCHHHHHHHHHCCCCCCE
T ss_conf 1986999999726585661
No 6
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=1.00 E-value=1 Score=17.70 Aligned_cols=18 Identities=17% Similarity=0.339 Sum_probs=7.2
Q ss_pred CCCCCCCHHHHHHH-HHHH
Q ss_conf 88777603678666-7552
Q 000783 174 KASIPNDFSWYKRT-FTQV 191 (1287)
Q Consensus 174 kasIqNDFS~YRRa-~~r~ 191 (1287)
-|.-.+=|++++.+ +..+
T Consensus 38 ~P~~~~iF~a~~~tp~~~v 56 (223)
T 3fci_A 38 YPPPHQVFTWTQMCDIKDV 56 (223)
T ss_dssp ESCGGGTTGGGTSSCGGGC
T ss_pred CCCHHHHHHHHHCCCCCCE
T ss_conf 3987899998742684624
No 7
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=1.00 E-value=1 Score=16.48 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 3787780269999997289997999999999999977735899999997378544866777660558
Q 000783 920 HSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGC 986 (1287)
Q Consensus 920 y~~F~G~pH~~ai~RLLg~~gia~v~~ell~~~~~~i~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~ 986 (1287)
.....|..+.+.|+++|.|||+-.+ ..+..++.++ .++||. --..=||.||+
T Consensus 18 ~~~~~~~~~w~~I~~~l~yq~~~~~---------~f~~~l~~~~----~~iPkk--n~ili~GPPGt 69 (212)
T 1tue_A 18 CSKIDEGGDWRPIVQFLRYQQIEFI---------TFLGALKSFL----KGTPKK--NCLVFCGPANT 69 (212)
T ss_dssp HHTSCSCCCSHHHHHHHHHTTCCHH---------HHHHHHHHHH----HTCTTC--SEEEEESCGGG
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCHH---------HHHHHHHHHH----HCCCCC--CEEEEECCCCC
T ss_conf 9872479999999999987696789---------9999999998----629865--27999889998
No 8
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=1.00 E-value=1 Score=13.87 Aligned_cols=20 Identities=25% Similarity=0.687 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98852799999999999999999
Q 000783 708 AEVDHCFDIFVSRLCETIFTYYK 730 (1287)
Q Consensus 708 AEvnLCFDqlv~kLsd~iF~~yK 730 (1287)
.+.|.|||+|.|. .|+.|+.
T Consensus 114 ~kIN~~FD~fly~---aV~~Yte 133 (136)
T 1yku_A 114 KKINQFFDHLIYY---TVHSYYE 133 (136)
T ss_dssp HHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHH
T ss_conf 9999999999999---9988876
No 9
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=1.00 E-value=1 Score=13.77 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCEEE
Q ss_conf 889888865568962175
Q 000783 16 FSLEDEQPEVQGPSVLVS 33 (1287)
Q Consensus 16 ~~l~d~qP~ie~~~~~l~ 33 (1287)
|-+|||.|||.+--++++
T Consensus 1 fhvpddrpcinpgrcplv 18 (53)
T 4a94_C 1 FHVPDDRPCINPGRCPLV 18 (53)
T ss_dssp --CCCCBCCSSCCCCTTS
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 978878765388757645
No 10
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=1.00 E-value=1 Score=13.65 Aligned_cols=16 Identities=31% Similarity=0.852 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHHHHH
Q ss_conf 324785532488999973
Q 000783 1169 KVLGDSVAWGGCTIIYLL 1186 (1287)
Q Consensus 1169 e~fGDGl~WaGctiI~LL 1186 (1287)
|+|.||++||= |+.|+
T Consensus 136 elF~DGiNWGR--IVaLf 151 (207)
T 2xa0_A 136 ELFRDGVNWGR--IVAFF 151 (207)
T ss_dssp HHHTTCCCHHH--HHHHH
T ss_pred HHHCCCCCHHH--HHHHH
T ss_conf 99557997899--99999
Done!