Query 000783
Match_columns 1287
No_of_seqs 125 out of 127
Neff 4.8
Searched_HMMs 13730
Date Tue Mar 26 17:14:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000783.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_553-557//hhsearch_scop/000783hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dwka2 d.72.1.1 (A:87-156) Cy 15.6 2.3 0.00017 17.3 -4.2 47 1145-1211 8-54 (70)
2 d3e9oa1 c.55.3.14 (A:1835-2087 4.1 89 0.0065 5.7 1.3 42 621-677 113-154 (253)
3 d1bb8a_ d.10.1.1 (A:) DNA-bind 4.0 92 0.0067 5.6 1.2 20 421-442 37-56 (71)
4 d3enba1 c.55.3.14 (A:1771-1989 3.8 97 0.0071 5.5 0.9 44 621-679 105-148 (219)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 3.3 1.2E+02 0.0086 4.9 5.4 38 790-827 12-52 (68)
6 d3euga_ c.18.1.1 (A:) Uracil-D 3.3 31 0.0023 9.0 -2.9 37 156-192 15-53 (225)
7 d1cqxa3 c.25.1.5 (A:262-403) F 3.3 1.2E+02 0.0086 4.8 2.2 102 825-927 11-138 (142)
8 d2ca5a1 a.2.20.1 (A:20-78) Mxi 3.0 1.3E+02 0.0095 4.5 0.7 34 984-1017 25-59 (59)
9 d1re3b1 d.171.1.1 (B:200-458) 3.0 1.3E+02 0.0098 4.4 0.6 56 1139-1195 57-112 (259)
10 d1p65a_ d.254.1.1 (A:) Arteriv 2.8 1.4E+02 0.01 4.3 0.1 16 645-660 31-46 (57)
No 1
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.64 E-value=2.3 Score=17.30 Aligned_cols=47 Identities=30% Similarity=0.429 Sum_probs=33.7
Q ss_pred HHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 7664421200122017999998543247855324889999732233332224101234445410136
Q 000783 1145 FYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAIS 1211 (1287)
Q Consensus 1145 FhRlwSalQf~~c~p~~~~e~~~~e~fGDGl~WaGctiI~LLgQq~rFe~lDF~yHiL~v~~~d~~~ 1211 (1287)
.||+|-++| +|..... -..+|-||||.+ .|.||+-.+-++...+|+|
T Consensus 8 iYR~yE~v~-vYG~~~K---~li~E~FGDGIM----------------SAIdF~~~v~k~~d~~ggd 54 (70)
T d1dwka2 8 MYRFYEMLQ-VYGTTLK---ALVHEKFGDGII----------------SAINFKLDVKKVADPEGGE 54 (70)
T ss_dssp HHHHHHHHH-HHHHHHH---HHHHHHTCSEEE----------------EEEEEEEEEEEEECTTSSE
T ss_pred HHHHHHHHH-HHCHHHH---HHHHHHCCCCEE----------------EEEEEEEEEEEECCCCCCC
T ss_conf 566789998-7468899---999887065477----------------7676014678600898897
No 2
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=4.15 E-value=89 Score=5.74 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHHCHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 640817789862033210355553136881213676761079899886208841023
Q 000783 621 HILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLE 677 (1287)
Q Consensus 621 ~LL~~s~tl~~~~DLS~LWfREfyLEl~~~iQFPIe~SLPWILtdhiL~s~~~~l~E 677 (1287)
|+|||+...-.-||| .++|+--|++. .+.|-||+..+|.|..
T Consensus 113 hlldfPnI~I~~seL--------------~lpF~~~mki~-k~~dlil~ate~qmvl 154 (253)
T d3e9oa1 113 HMLDFPNIAIRPTEL--------------RLPFSAAMSID-KLSDVVMKATEPQMVL 154 (253)
T ss_dssp HTTTCTTSEEECBCS--------------CCCGGGGGGSH-HHHHHHHHCSSCEEEE
T ss_pred HHCCCCCEEEECCCC--------------CCCHHHHHHHH-HHHHHHHCCCCCCEEE
T ss_conf 602389835744102--------------43679884458-8765665058872899
No 3
>d1bb8a_ d.10.1.1 (A:) DNA-binding domain from tn916 integrase {Enterococcus faecalis [TaxId: 1351]}
Probab=4.04 E-value=92 Score=5.64 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=11.7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 7652204688999999884457
Q 000783 421 QCAWKFSRPYKDAVPSETNEAS 442 (1287)
Q Consensus 421 q~aWKl~hP~~~~~~~~~~~~p 442 (1287)
.|||||. |+ |+.+..-++|.
T Consensus 37 vYswkL~-~t-Dk~p~Gk~d~~ 56 (71)
T d1bb8a_ 37 VYSWKLV-AT-DRVPAGKRDCI 56 (71)
T ss_dssp EEESCSS-TT-CCCCTTCCCCC
T ss_pred EEEEEEC-CC-CCCCCCCCCHH
T ss_conf 9864303-46-65555643207
No 4
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.85 E-value=97 Score=5.45 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHCHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 64081778986203321035555313688121367676107989988620884102311
Q 000783 621 HILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESV 679 (1287)
Q Consensus 621 ~LL~~s~tl~~~~DLS~LWfREfyLEl~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~i 679 (1287)
|||||+++.-.-||| .+.|+--|.+. .+.|-+|+..+|.|..+-
T Consensus 105 hllDfPNI~I~~sel--------------~lpF~~~mki~-k~~D~vlka~ep~m~lfn 148 (219)
T d3enba1 105 HLLDFPNIVIKGSEL--------------QLPFQACLKVE-KFGDLILKATEPQMVLFN 148 (219)
T ss_dssp HTTTCTTCEEEECCC--------------CCCGGGGGGSH-HHHHHHHHCSSCEEEEEE
T ss_pred HHCCCCCEEEECCCC--------------CCCHHHHHCHH-HHHHHHHHCCCCCEEEEE
T ss_conf 620189804643102--------------42679884548-887888624787479997
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=3.30 E-value=1.2e+02 Score=4.85 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99899999886208953---399899999999999998751
Q 000783 790 RENLEFLFDRFESQDLC---AIVELEKLLDILKHTHELLSK 827 (1287)
Q Consensus 790 ~~~le~ai~rfEs~dl~---~iveLe~ll~v~r~TH~LLse 827 (1287)
.+.|+-.+.++|+++++ ++-.++..+...|.|++.|.+
T Consensus 12 l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~C~~~L~~ 52 (68)
T d1vp7a_ 12 LAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQ 52 (68)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998679998999999999999999999999999
No 6
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=31 Score=9.02 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHH-HHHHH
Q ss_conf 99999989986-033335688777603678666-75522
Q 000783 156 SMLKLLDVLVQ-LDHLKNAKASIPNDFSWYKRT-FTQVS 192 (1287)
Q Consensus 156 ~La~iLdf~l~-lD~LK~~kasIqNDFS~YRRa-~~r~~ 192 (1287)
.|.++++++.. .+.-+..-|...|=|..|+-+ +..+|
T Consensus 15 yf~~l~~~l~~e~~~~~~i~P~~~~IF~af~~~~~~~vK 53 (225)
T d3euga_ 15 HFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVK 53 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCEESCGGGTTHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCE
T ss_conf 999999999999985995679878999998706975756
No 7
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=3.29 E-value=1.2e+02 Score=4.84 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=43.9
Q ss_pred HHCCCCCCCHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 7517998908999999622788--------77862279999999985211233223556764103898----------86
Q 000783 825 LSKDLSIDSFRLILNEMQENIS--------LVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSK----------VP 886 (1287)
Q Consensus 825 Lse~L~LdpF~~ml~Ean~~~s--------~~s~~gRIt~hv~~eL~~Df~pNy~yn~~T~RFvrs~~----------~~ 886 (1287)
++-+..+.||=+|++++.++-. .-.+...+...-+.++... .+|+.+....-|-..... ..
T Consensus 11 iagGtGIaP~~sil~~~~~~~~~~i~li~~~r~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (142)
T d1cqxa3 11 ISGGVGLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKT-YENLDLFVFYDQPLPEDVQGRDYDYPGLVD 89 (142)
T ss_dssp EESSCCHHHHHHHHHHHTCSSCCCEEEEEEESCSSSCHHHHHHHHHHHH-CTTEEEEEEESSCCTTCCBTTTBSEESSCC
T ss_pred EECCEEHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 9865448999999999997699838998420575651008999889974-787289999723677665201222003648
Q ss_pred CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH--------HCCCCCCCH
Q ss_conf 67788999999987401131426999999870--------037877802
Q 000783 887 LASVQKPSVPYAKPSFYCGTQDLNSAHQSFAR--------LHSGFFGIP 927 (1287)
Q Consensus 887 ~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~--------ly~~F~G~p 927 (1287)
.....+.-.+.....|+||......+...... .|...||+.
T Consensus 90 ~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~G~~~~~i~~E~Fg~~ 138 (142)
T d1cqxa3 90 VKQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEVFGPD 138 (142)
T ss_dssp GGGSHHHHCCTTCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCCSSC
T ss_pred HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 9999851245785499978816899999999985998887999715898
No 8
>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri [TaxId: 623]}
Probab=3.02 E-value=1.3e+02 Score=4.52 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 558999999714366-6411799998999776699
Q 000783 984 TGCMRLVKEQLNWGT-KSELKAEVLHGIKEIGSVL 1017 (1287)
Q Consensus 984 ~g~~~~~~~~L~~~~-~~dlk~~v~q~frElGN~i 1017 (1287)
|.++.-||+.|-.+. |.-.++.....||.|+.+|
T Consensus 25 p~~LA~YQ~klsEYnlyRNAQSstVK~~KDid~aI 59 (59)
T d2ca5a1 25 PQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAI 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999999872155889997530139
No 9
>d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]}
Probab=2.95 E-value=1.3e+02 Score=4.43 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=0.0
Q ss_pred ECCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 134620766442120012201799999854324785532488999973223333222
Q 000783 1139 ITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELF 1195 (1287)
Q Consensus 1139 id~~~eFhRlwSalQf~~c~p~~~~e~~~~e~fGDGl~WaGctiI~LLgQq~rFe~l 1195 (1287)
.|-+..|+|-|..-.-.|--|..++....-.. -+|=+|=|-..||.|-.|...|+.
T Consensus 57 ~dGs~~F~R~W~eYk~GFG~~~~~~~~~~~~~-l~gEfWLGle~ih~LT~~~~~~Lr 112 (259)
T d1re3b1 57 QDGSVDFGRKWDPYKQGFGNVATNTDGKNYCG-LPGEYWLGNDKISQLTRMGPTELL 112 (259)
T ss_dssp SSSCSCCCCCHHHHHHCEECSEECCTTCSSCC-EECSEECCHHHHHHHHTSSCEEEE
T ss_pred CCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCC-CCCHHHHCHHHHHHHHCCCCEEEE
T ss_conf 17733553377888406597100245554444-560120043078751167876789
No 10
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=2.83 E-value=1.4e+02 Score=4.26 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=0.0
Q ss_pred HCCCCEEECCCCCCCH
Q ss_conf 1368812136767610
Q 000783 645 LESSRVIQFPIECSLP 660 (1287)
Q Consensus 645 LEl~~~iQFPIe~SLP 660 (1287)
|--+++|.|++|.+||
T Consensus 31 Ls~SG~i~~~VeFmLP 46 (57)
T d1p65a_ 31 LSDSGRISYTVEFSLP 46 (57)
T ss_dssp ECTTSCEEEEEEECCC
T ss_pred EECCCCEEEEEEEECC
T ss_conf 8338954369999733
Done!