Query 000785
Match_columns 1287
No_of_seqs 276 out of 1294
Neff 5.2
Searched_HMMs 46136
Date Mon Apr 1 23:34:41 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 7.6E-51 1.6E-55 496.4 25.1 295 12-379 79-397 (894)
2 PRK06464 phosphoenolpyruvate s 100.0 1.5E-48 3.2E-53 487.9 29.7 289 969-1286 3-333 (795)
3 PRK06241 phosphoenolpyruvate s 100.0 9.1E-48 2E-52 486.8 29.2 278 970-1286 2-311 (871)
4 TIGR01418 PEP_synth phosphoeno 100.0 1.9E-47 4E-52 478.3 28.7 287 972-1286 1-331 (782)
5 PF01326 PPDK_N: Pyruvate phos 100.0 1.5E-48 3.2E-53 446.5 2.3 269 982-1287 4-303 (327)
6 PRK05878 pyruvate phosphate di 100.0 4.6E-38 9.9E-43 376.9 21.4 246 968-1286 4-297 (530)
7 COG0574 PpsA Phosphoenolpyruva 100.0 5.4E-36 1.2E-40 374.1 17.7 278 972-1286 4-320 (740)
8 TIGR01828 pyru_phos_dikin pyru 100.0 5E-34 1.1E-38 358.3 19.9 242 971-1286 2-337 (856)
9 PRK09279 pyruvate phosphate di 100.0 4.6E-31 1E-35 330.7 22.4 242 970-1286 3-343 (879)
10 PRK05849 hypothetical protein; 99.9 1.1E-25 2.3E-30 280.0 18.3 193 981-1287 5-216 (783)
11 PLN02784 alpha-amylase 99.9 3.8E-25 8.2E-30 272.0 13.9 130 246-376 68-210 (894)
12 PLN02316 synthase/transferase 97.1 0.016 3.6E-07 76.3 19.9 90 23-126 143-239 (1036)
13 PRK05849 hypothetical protein; 96.7 0.02 4.4E-07 73.8 14.6 176 756-938 571-781 (783)
14 PRK06241 phosphoenolpyruvate s 96.3 0.097 2.1E-06 68.9 17.8 93 838-939 773-868 (871)
15 PRK08296 hypothetical protein; 95.9 0.012 2.6E-07 73.8 6.3 97 836-939 503-601 (603)
16 PLN02316 synthase/transferase 95.8 0.3 6.5E-06 64.9 18.7 88 31-126 326-420 (1036)
17 PF00391 PEP-utilizers: PEP-ut 95.6 0.012 2.5E-07 55.2 3.9 68 862-933 9-78 (80)
18 PF03423 CBM_25: Carbohydrate 95.0 0.13 2.8E-06 49.3 8.7 65 288-373 20-86 (87)
19 PRK05865 hypothetical protein; 93.6 0.14 3E-06 67.1 7.5 98 836-941 739-838 (854)
20 PRK06354 pyruvate kinase; Prov 93.3 0.1 2.2E-06 65.8 5.4 95 836-937 486-582 (590)
21 TIGR01418 PEP_synth phosphoeno 93.2 0.14 2.9E-06 66.8 6.5 94 834-934 356-451 (782)
22 PRK05878 pyruvate phosphate di 92.7 0.16 3.6E-06 63.2 6.0 100 832-938 350-452 (530)
23 PRK06464 phosphoenolpyruvate s 92.7 0.13 2.8E-06 67.1 5.3 99 834-940 358-462 (795)
24 PRK11377 dihydroxyacetone kina 92.7 0.16 3.6E-06 62.4 5.9 68 862-939 395-471 (473)
25 PRK09279 pyruvate phosphate di 91.9 0.15 3.2E-06 66.9 4.5 105 834-941 396-511 (879)
26 PF03423 CBM_25: Carbohydrate 91.7 0.48 1E-05 45.5 6.5 67 46-124 18-86 (87)
27 TIGR01828 pyru_phos_dikin pyru 90.5 0.28 6E-06 64.4 5.0 105 834-941 390-505 (856)
28 PRK11177 phosphoenolpyruvate-p 88.9 0.53 1.2E-05 59.4 5.5 78 862-943 153-233 (575)
29 TIGR01417 PTS_I_fam phosphoeno 88.1 0.69 1.5E-05 58.3 5.8 76 862-942 152-231 (565)
30 COG1080 PtsA Phosphoenolpyruva 86.4 1 2.2E-05 56.1 5.7 72 862-943 154-234 (574)
31 COG3848 Phosphohistidine swive 86.0 0.94 2E-05 44.8 4.1 99 835-940 5-105 (111)
32 PRK11061 fused phosphoenolpyru 85.9 0.9 2E-05 59.1 5.3 76 862-943 320-399 (748)
33 PRK03955 hypothetical protein; 80.4 7.3 0.00016 40.4 8.2 96 836-939 6-128 (131)
34 PF11154 DUF2934: Protein of u 67.9 6.5 0.00014 32.7 3.4 35 138-175 5-39 (40)
35 COG0574 PpsA Phosphoenolpyruva 64.0 3.3 7.2E-05 54.0 1.5 126 796-930 305-432 (740)
36 COG3605 PtsP Signal transducti 62.0 5.1 0.00011 50.1 2.5 79 858-941 323-405 (756)
37 PF02786 CPSase_L_D2: Carbamoy 38.5 53 0.0011 36.6 5.5 45 1237-1286 131-179 (211)
38 PF04190 DUF410: Protein of un 31.8 1.4E+02 0.0031 34.3 7.7 87 466-556 53-158 (260)
39 COG5424 Pyrroloquinoline quino 30.9 57 0.0012 37.2 4.1 24 554-578 92-116 (242)
40 KOG3021 Predicted kinase [Gene 26.8 50 0.0011 37.6 2.8 43 461-505 95-137 (313)
41 KOG2122 Beta-catenin-binding p 24.0 1.3E+03 0.027 33.5 14.7 122 695-825 393-522 (2195)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=7.6e-51 Score=496.36 Aligned_cols=295 Identities=24% Similarity=0.466 Sum_probs=238.5
Q ss_pred ceeeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCccccc
Q 000785 12 VHNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQT 77 (1287)
Q Consensus 12 ~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~a~~T 77 (1287)
...|.|.... ++-|-|. .+++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++||||
T Consensus 79 kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT 156 (894)
T PLN02784 79 KETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIET 156 (894)
T ss_pred eeeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEec
Confidence 3467765554 2334443 67788999999866 7788999999999885 89999999 44 8999999
Q ss_pred ccccc--cc-cEEEEEEec-CCcceeEEEEEEeccccccccccCCcccccCCCCCCCCCCCCCchhhHh-hhhhhhhhcc
Q 000785 78 PFVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIE-LRAYQNWERR 152 (1287)
Q Consensus 78 pf~~~--g~-~~~v~ie~~-d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~~~~~~~~~~vpe~lv~-~~a~~~We~~ 152 (1287)
||+++ |+ .+.|+|||+ ++++.||+||||+|++|+|||++|+||+|+||+......+ +++ -+.+..|..
T Consensus 157 ~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~------~~~~~~~~~~~~~- 229 (894)
T PLN02784 157 PLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGN------NVGAKKGFGIWPG- 229 (894)
T ss_pred cccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccc------eeehhhhcCcCcC-
Confidence 99996 44 788889999 9999999999999999999999999999999997665655 333 567788888
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHhhcCCChHHhhhhcccCCCCCCCCCccccccCCCCCCccccchhHhhhhccC--CC
Q 000785 153 GRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYK--GH 230 (1287)
Q Consensus 153 gkp~~~~~~~~~~~~~a~~~l~~~l~~G~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~~--~~ 230 (1287)
.|.++..-+.++ +.++++.+++. .++..+ ....++ |++||+ |+
T Consensus 230 -----------------------------~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~~-~~~~~~~~~~ 274 (894)
T PLN02784 230 -----------------------------ALGQLSNILLKD-EGSPSKEQDKS--SSELDS--AAERKG-LKGFYEEMPI 274 (894)
T ss_pred -----------------------------ccccccchhccC-CCCCcccCCCc--cccccc--cccccc-chhhhhccce
Confidence 666666655554 33333333222 111111 122333 788898 77
Q ss_pred CcCCCCCchhHHHHHHhhcCCCcceeeeeeecceEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 000785 231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP 308 (1287)
Q Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~v~~~k~f~~~~ei~V~v~~~--~g~~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP~ 308 (1287)
.|+ +.++ +.+.|+|+++ ++|++|+|+||+|++|||||||||++++||++||+
T Consensus 275 ~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~ 328 (894)
T PLN02784 275 VKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE 328 (894)
T ss_pred eeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence 776 4455 8899999984 78999999999999999999999999999999999
Q ss_pred CCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 000785 309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (1287)
Q Consensus 309 ~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~-~~~W~k~~G~DF~V~l~~~~~~ 379 (1287)
+++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 999999999999999999999999899988777 7899999999999 6999999999999999987544
No 2
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.5e-48 Score=487.90 Aligned_cols=289 Identities=25% Similarity=0.381 Sum_probs=241.5
Q ss_pred CCceeeeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 000785 969 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 1044 (1287)
Q Consensus 969 ~~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~ 1044 (1287)
+++++++|.++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+...++..+..
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 457889988875 4689999999999998665 59999999999999999999998 7888888877777767765
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHH--------------HhcC-------CCCCCCc-------cHHHHHHHHHH
Q 000785 1045 KL----QEIQEAVLQMSAPLSLIYELKNKM--------------RSSG-------MPWPGDE-------GWNLAWRSIKK 1092 (1287)
Q Consensus 1045 ~L----~~IR~~I~~~~lP~eL~~eL~~a~--------------RSSg-------~s~AG~~-------g~e~l~~AIK~ 1092 (1287)
.+ ++||++|++.++|+++.++|..++ |||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 44 899999999999999999998775 3443 3789988 37999999999
Q ss_pred HHhcCCChHHHHHHHHcCCCCCCcceEEEEEeeeCCc--eeEEEEecCCCCCCCcceeeecccCccccccccccCCCceE
Q 000785 1093 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 1170 (1287)
Q Consensus 1093 VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f 1170 (1287)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+|+.++++|+++|||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999987 99999
Q ss_pred EEecCCCC--CCcccccccccccccCCCceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHH
Q 000785 1171 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 1248 (1287)
Q Consensus 1171 ~v~K~~~~--~~~vl~~~sK~ig~~~~k~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~l 1248 (1287)
.++|.+.. ...+ .++.++. |...+..+..| +.| ...+++++.. +..|+|+|++
T Consensus 239 ~v~~~~~~~~~~~i---~~~~i~~---K~~~~~~~~~~-------~~~-~~~~~~~~~~------~~~~~L~~~~----- 293 (795)
T PRK06464 239 YVHKPTLKAGKPAI---VRRTLGS---KKIKMVYDDGG-------EHG-VKTVDVPEEE------RNRFSLTDEE----- 293 (795)
T ss_pred EEecccccccccce---eeeeccc---cceeeeeccCC-------CCc-eeEEeCCHHH------hhccCCCHHH-----
Confidence 99987542 0112 2445554 22222222111 223 3456665432 4689999998
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 000785 1249 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 1286 (1287)
Q Consensus 1249 l~rLa~la~~IE~~fG~PQDIEwai~d--g~LyILQaRPq 1286 (1287)
+++|++++.+||++||+|||||||+++ |+|||||+||+
T Consensus 294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi 333 (795)
T PRK06464 294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE 333 (795)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence 899999999999999999999999987 99999999997
No 3
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=9.1e-48 Score=486.83 Aligned_cols=278 Identities=23% Similarity=0.419 Sum_probs=230.5
Q ss_pred CceeeeCCCCC---CCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHH-
Q 000785 970 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSK- 1045 (1287)
Q Consensus 970 ~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~- 1045 (1287)
.++++++.++. .+.|||||+||++|++ .|++||+|||||+++|++||+.+ ++.+.|....+.++..+...
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 46788888764 4689999999999999 79999999999999999999987 44444444334444445433
Q ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHH-----------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcC
Q 000785 1046 ---LQEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 1097 (1287)
Q Consensus 1046 ---L~~IR~~I~~~~lP~eL~~eL~~a~-----------RSSg-------~s~AG~~-------g~e~l~~AIK~VWASl 1097 (1287)
.++||++|++.++|+++.++|..++ |||+ .||||++ +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 3799999999999999999999875 5554 3789988 4899999999999999
Q ss_pred CChHHHHHHHHcCCCCCCcceEEEEEeeeCCceeEEEEecCCCCCCCcceeeecccCccccccccccCCCceEEEecCCC
Q 000785 1098 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNL 1177 (1287)
Q Consensus 1098 fn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~v~K~~~ 1177 (1287)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|++++ +
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~ 232 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G 232 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999982 2
Q ss_pred CCCcccccccccccccCCCceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHHHHHHHHHHH
Q 000785 1178 KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGK 1257 (1287)
Q Consensus 1178 ~~~~vl~~~sK~ig~~~~k~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~rLa~la~ 1257 (1287)
.+ .++.++.+ ...++.. +++|+ ..+++++. .++.|+|++++ +.+|+++|.
T Consensus 233 ---~i---~~~~i~~k--~~~~~~~----------~~gg~-~~~~~~~~------~~~~~~L~~~~-----~~~L~~l~~ 282 (871)
T PRK06241 233 ---KI---IDKTIATK--KLAIYAL----------KEGGT-ETKEIEPE------QQKSQTLTDEQ-----ILELARLGR 282 (871)
T ss_pred ---ce---EEEecccc--ceEEEec----------CCCce-EEEECCHH------HhcCCCCCHHH-----HHHHHHHHH
Confidence 23 24455542 2122222 13343 34555432 24579999988 899999999
Q ss_pred HHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000785 1258 IIESLYGYPQDIEGVLKDGLIYVVQARPQ 1286 (1287)
Q Consensus 1258 ~IE~~fG~PQDIEwai~dg~LyILQaRPq 1286 (1287)
+||++||+|||||||+.+|+|||||+||+
T Consensus 283 ~ie~~~g~pqDIEw~~~~~~l~ilQaRPi 311 (871)
T PRK06241 283 KIEAHFGCPQDIEWCLADGTFYILQSRPI 311 (871)
T ss_pred HHHHHcCCCcceEEEEECCEEEEEEcCCc
Confidence 99999999999999999999999999997
No 4
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=1.9e-47 Score=478.29 Aligned_cols=287 Identities=27% Similarity=0.409 Sum_probs=235.2
Q ss_pred eeeeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH-
Q 000785 972 YAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1046 (1287)
Q Consensus 972 ~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L- 1046 (1287)
+++||+++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+.+.++..+.+.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467777764 4689999999999997332 58999999999999999999988 777778777666666666544
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHH----------------HhcC-------CCCCCCc-------cHHHHHHHHHHH
Q 000785 1047 ---QEIQEAVLQMSAPLSLIYELKNKM----------------RSSG-------MPWPGDE-------GWNLAWRSIKKV 1093 (1287)
Q Consensus 1047 ---~~IR~~I~~~~lP~eL~~eL~~a~----------------RSSg-------~s~AG~~-------g~e~l~~AIK~V 1093 (1287)
++||++|++.++|+++.++|..++ |||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 799999999999999999988764 4553 3789987 479999999999
Q ss_pred HhcCCChHHHHHHHHcCCCCCCcceEEEEEeeeCCc--eeEEEEecCCCCCCCcceeeecccCccccccccccCCCceEE
Q 000785 1094 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 1171 (1287)
Q Consensus 1094 WASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~ 1171 (1287)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||+||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 999999
Q ss_pred EecCCCCC--CcccccccccccccCCCceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHHH
Q 000785 1172 TKKNNLKS--PIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVF 1249 (1287)
Q Consensus 1172 v~K~~~~~--~~vl~~~sK~ig~~~~k~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~ll 1249 (1287)
++|.+... ..+ .++.++. |...+..+..| +.+.....++++.. +.+|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i---~~~~~~~---k~~~~~~~~~g-------~~~~~~~~~~~~~~------~~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAI---LERTLGS---KKIKMVYDPDG-------GNVETKIVEVPEEE------RDAFSLSDEE-----I 292 (782)
T ss_pred Eecccccccccce---eeeeccc---cceEEEEccCC-------CCcceEEEeCCHHH------hhccCCCHHH-----H
Confidence 99876420 012 2444443 22222222111 11123455555432 4679999998 8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEE--CCeEEEEeeccC
Q 000785 1250 SKIAETGKIIESLYGYPQDIEGVLK--DGLIYVVQARPQ 1286 (1287)
Q Consensus 1250 ~rLa~la~~IE~~fG~PQDIEwai~--dg~LyILQaRPq 1286 (1287)
++|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 9999999999999999999999999 899999999997
No 5
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=1.5e-48 Score=446.51 Aligned_cols=269 Identities=31% Similarity=0.525 Sum_probs=197.1
Q ss_pred CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCCh----HHHHHHHHHHHcCC
Q 000785 982 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL----SKLQEIQEAVLQMS 1057 (1287)
Q Consensus 982 ~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~----~~L~~IR~~I~~~~ 1057 (1287)
..|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+...+...+. +.+++||++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 458999999999997 79999999999999999999987 788888887654332222 34689999999999
Q ss_pred CCHHHHHHHHHHH------------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 000785 1058 APLSLIYELKNKM------------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 1111 (1287)
Q Consensus 1058 lP~eL~~eL~~a~------------RSSg-------~s~AG~~-------g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi 1111 (1287)
+|+++.++|..++ |||+ .+|||+| +.++|++|||+||||+|++||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 9999999999875 4443 2678877 369999999999999999999999999999
Q ss_pred CCCCcceEEEEEeeeCCceeEEEEecCCCCCCCcc-eeeecccCccccccccccCCCceEEEecCCCCCCcccccccccc
Q 000785 1112 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1190 (1287)
Q Consensus 1112 ~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~e-i~IEav~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~i 1190 (1287)
+++++.|||+||+||++++|||+||+||.+|+.++ ++|++++||||+||+|.+ +|++|++++.++. +. .+.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~~---~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---IR---EREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---HH---EEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---hh---hhhc
Confidence 99999999999999999999999999999999998 999999999999999998 9999999876532 21 2333
Q ss_pred cccCCCceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 000785 1191 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1270 (1287)
Q Consensus 1191 g~~~~k~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~rLa~la~~IE~~fG~PQDIE 1270 (1287)
+. |...+... .++|+ ..++++. ++...++|++++ +++|++++..||++||+|||||
T Consensus 231 ~~---k~~~~~~~---------~~~~~-~~~~~~~------~~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQ---KSVQLVPD---------EGGGL-EEVDVPE------ERQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp ------HCCCCCC---------CTTTE-ECCCHHH------HCHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CC---ceEEEEEc---------CCCce-EEEeCch------hhhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 32 21111111 24453 3443332 235678888877 8999999999999999999999
Q ss_pred EEEECCeEEEEeeccCC
Q 000785 1271 GVLKDGLIYVVQARPQM 1287 (1287)
Q Consensus 1271 wai~dg~LyILQaRPqv 1287 (1287)
||+++|+|||||+||+.
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999984
No 6
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=4.6e-38 Score=376.92 Aligned_cols=246 Identities=18% Similarity=0.274 Sum_probs=195.8
Q ss_pred cCCceeeeCCCCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhCC--
Q 000785 968 FRGKYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFING-- 1040 (1287)
Q Consensus 968 ~~~~~vl~l~e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~--n~~L~~~I~~l~a~l~~-- 1040 (1287)
+..++++++++... +++|||++||++|++ .++|||+|||||+.+|++|++.+. ...++++|....+.++.
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999998754 689999999999998 689999999999999999999863 23466666554432211
Q ss_pred ----C---ChH----------HHHHHHHHHHcCCCCHHHHHHHHHHHHh------cCCCCCCCc-------------cHH
Q 000785 1041 ----G---DLS----------KLQEIQEAVLQMSAPLSLIYELKNKMRS------SGMPWPGDE-------------GWN 1084 (1287)
Q Consensus 1041 ----~---d~~----------~L~~IR~~I~~~~lP~eL~~eL~~a~RS------Sg~s~AG~~-------------g~e 1084 (1287)
+ ++. .+.-+++.|+++.+|++++++|.+..-. +..+|+|+| .++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 1 111 1234999999999999999999764211 112455554 158
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceEEEEEeeeCCc-----eeEEEEecCCCCCCCcceeeecccCccccc
Q 000785 1085 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 1159 (1287)
Q Consensus 1085 ~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~ei~IEav~GLGEtL 1159 (1287)
+|..|||.||||+||+||+.||+++|++++ ..|||+||+||.++ .|||+||+||.+|+...+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~-~~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDD-GGTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCcc-cCcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 999999999999999999999999999875 48999999999664 579999999999998888888899999999
Q ss_pred cccccCCCceEEEecCCCCCCcccccccccccccCCCceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCC
Q 000785 1160 VGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMV 1239 (1287)
Q Consensus 1160 VsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~ig~~~~k~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plL 1239 (1287)
|+|.+ +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99976 5654332110 001
Q ss_pred CCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000785 1240 GDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1286 (1287)
Q Consensus 1240 tD~~~r~~ll~rLa~la~~IE~~fG~PQDIEwai~dg~LyILQaRPq 1286 (1287)
..+.+|++++..||++||.||||||++++|+|||||+||.
T Consensus 258 -------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 -------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred -------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1267999999999999999999999999999999999995
No 7
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-36 Score=374.14 Aligned_cols=278 Identities=26% Similarity=0.428 Sum_probs=222.5
Q ss_pred eeeeCCCC---CCCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH--
Q 000785 972 YAVSVEDF---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 1046 (1287)
Q Consensus 972 ~vl~l~e~---~~~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L-- 1046 (1287)
++.++.+. +..++|||++||++|.+ .|++||+||||++.+|++|++.+ ++.+.+...+..++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 45555554 35899999999999999 79999999999999999999987 677777766655444443333
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHh---------------cC-------CCCCCCc-------cHHHHHHHHHHHHh
Q 000785 1047 --QEIQEAVLQMSAPLSLIYELKNKMRS---------------SG-------MPWPGDE-------GWNLAWRSIKKVWA 1095 (1287)
Q Consensus 1047 --~~IR~~I~~~~lP~eL~~eL~~a~RS---------------Sg-------~s~AG~~-------g~e~l~~AIK~VWA 1095 (1287)
..+|..|...++|+++.+++..++.. |+ .+|+|+. +.++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 68999999999999999999988733 22 2588855 58999999999999
Q ss_pred cCCChHHHHHHHHcCCCCCCcceEEEEEeeeCCc--eeEEEEecCCCCCCCcceeeecccCccccccccccCCCceEEEe
Q 000785 1096 SKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 1173 (1287)
Q Consensus 1096 Slfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~v~ 1173 (1287)
|+||+||+.||.++|+++..+.|||+||.||.++ .|||+||+||.||....+.+++.|||||.+|+|.+ +|+.|.+.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred cCCCCCCcccccccccccccCCCceeeecCCCCcccccccCCCe-eeeeecCCccccccccCCCCCCCCcccchHHHHHH
Q 000785 1174 KNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGL-YDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 1252 (1287)
Q Consensus 1174 K~~~~~~~vl~~~sK~ig~~~~k~li~rsdsnGedLe~~ag~G~-~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~rL 1252 (1287)
|... ..+ ..+++.. .+++-.+. +.+. .+..+++.. ...+..++|.. +.+|
T Consensus 237 k~~~-~~~--~~~~~~~------~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKLI------KLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHHH------HHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHH
Confidence 9653 001 1123221 12221110 1111 112222211 23466788876 8999
Q ss_pred HHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000785 1253 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1286 (1287)
Q Consensus 1253 a~la~~IE~~fG~PQDIEwai~dg~LyILQaRPq 1286 (1287)
++++..||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999999 9999999996
No 8
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=5e-34 Score=358.31 Aligned_cols=242 Identities=19% Similarity=0.278 Sum_probs=188.5
Q ss_pred ceeeeCCCCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC------
Q 000785 971 KYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN------ 1039 (1287)
Q Consensus 971 ~~vl~l~e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~--n~~L~~~I~~l~a~l~------ 1039 (1287)
++++++++.+. .++|||++||++|++ .|+|||+|||||+.+|+.|++.+. ..++++.|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 57888888754 589999999999998 689999999999999999999873 2346666655444332
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCCHHHHHHHHH-------HH---H--------------hc---------
Q 000785 1040 ---GGDLS----------KLQEIQEAVLQMSAPLSLIYELKN-------KM---R--------------SS--------- 1073 (1287)
Q Consensus 1040 ---~~d~~----------~L~~IR~~I~~~~lP~eL~~eL~~-------a~---R--------------SS--------- 1073 (1287)
..++. ....+++.|+++.+|++++++|.+ ++ | ++
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 11111 124899999999999999999986 32 2 11
Q ss_pred ----CC------C----------CCCCc-----------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceEEEE
Q 000785 1074 ----GM------P----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 1122 (1287)
Q Consensus 1074 ----g~------s----------~AG~~-----------g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLV 1122 (1287)
+. + |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 11 1 33333 278999999999999999999999999999996 8999999
Q ss_pred EeeeCCc-----eeEEEEecCCCCCCCcceeeecc-cCccccccccccCCCceEEEecCCCCCCcccccccccccccCCC
Q 000785 1123 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKP 1196 (1287)
Q Consensus 1123 QemV~ad-----~SGVlfT~nP~tgd~~ei~IEav-~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~ig~~~~k 1196 (1287)
|+||.++ .|||+||+||.+|... ++++.. .|+||.||+|.+ +|+.|...+
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~~---------------------- 293 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAME---------------------- 293 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHhh----------------------
Confidence 9999665 7999999999999764 444433 469999999875 554322100
Q ss_pred ceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECC
Q 000785 1197 SIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDG 1276 (1287)
Q Consensus 1197 ~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~rLa~la~~IE~~fG~PQDIEwai~dg 1276 (1287)
.+.++. +.+|++++..||++||+|||||||+++|
T Consensus 294 -----------------------------------------~~~p~~-----~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 294 -----------------------------------------ADMPDV-----YKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred -----------------------------------------hcChHH-----HHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 011122 7899999999999999999999999999
Q ss_pred eEEEEeeccC
Q 000785 1277 LIYVVQARPQ 1286 (1287)
Q Consensus 1277 ~LyILQaRPq 1286 (1287)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 9
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.97 E-value=4.6e-31 Score=330.65 Aligned_cols=242 Identities=24% Similarity=0.391 Sum_probs=180.1
Q ss_pred CceeeeCCC----C---CCCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHH----HHHh
Q 000785 970 GKYAVSVED----F---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKIS----RLYK 1036 (1287)
Q Consensus 970 ~~~vl~l~e----~---~~~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~--n~~L~~~I~----~l~a 1036 (1287)
.++++++++ . ..+++|||++||++|.+ .|+|||+||+||+.+|++|++... ..+++..+. .|..
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 467888743 2 23799999999999998 699999999999999999998762 344554443 3333
Q ss_pred hhCC--CChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HHh----c--------------
Q 000785 1037 FING--GDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MRS----S-------------- 1073 (1287)
Q Consensus 1037 ~l~~--~d~~-------------~L~~IR~~I~~~~lP~eL~~eL~~a----------~RS----S-------------- 1073 (1287)
.... ++.+ ...-+.+.|+++-+.++.+..|.+. ||. .
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 2221 2211 1235666777777777777666542 111 1
Q ss_pred -------------------------------------CCCCCCCccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCc
Q 000785 1074 -------------------------------------GMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNL 1116 (1287)
Q Consensus 1074 -------------------------------------g~s~AG~~g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v 1116 (1287)
|.+|| ++.+++|..||+.||+|+||+||+.||+.+|++++ .
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp-~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~ 237 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFP-QDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-W 237 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-c
Confidence 11122 11388999999999999999999999999999986 8
Q ss_pred ceEEEEEeeeCCc-----eeEEEEecCCCCCCCcceeeec-ccCccccccccccCCCceEEEecCCCCCCcccccccccc
Q 000785 1117 CMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEI-VKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1190 (1287)
Q Consensus 1117 ~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~ei~IEa-v~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~i 1190 (1287)
.|||+||+||.++ .|||+||+||.||+.. ++++. +.|+||.||+|.+ +|+.|. .
T Consensus 238 g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~-~~Ge~l~~aqGedVVsG~~-tp~~~~----~-------------- 297 (879)
T PRK09279 238 GTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKK-LYGEFLINAQGEDVVAGIR-TPQPIP----S-------------- 297 (879)
T ss_pred CceEEEEeccccCCCCCcceEEEEeCCCCCCCCc-eeEEEecCCCChhhhcCcc-CcchhH----H--------------
Confidence 9999999999776 5999999999999865 44444 6799999999976 554330 0
Q ss_pred cccCCCceeeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 000785 1191 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1270 (1287)
Q Consensus 1191 g~~~~k~li~rsdsnGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~rLa~la~~IE~~fG~PQDIE 1270 (1287)
++ . ..++ .+++|++++..||++||.|||||
T Consensus 298 ------------------l~----------------~-----------~~p~-----~~~~L~~~~~~LE~~f~~pqDIE 327 (879)
T PRK09279 298 ------------------LE----------------E-----------AMPE-----VYAELVDIAKKLEKHYRDMQDIE 327 (879)
T ss_pred ------------------Hh----------------h-----------cChH-----HHHHHHHHHHHHHHHhCCCeeeE
Confidence 00 0 0011 27899999999999999999999
Q ss_pred EEEECCeEEEEeeccC
Q 000785 1271 GVLKDGLIYVVQARPQ 1286 (1287)
Q Consensus 1271 wai~dg~LyILQaRPq 1286 (1287)
|++++|+|||||+||.
T Consensus 328 ftie~g~L~iLQtRp~ 343 (879)
T PRK09279 328 FTIERGKLYMLQTRNG 343 (879)
T ss_pred EEEECCEEEEEEeCCc
Confidence 9999999999999995
No 10
>PRK05849 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=280.04 Aligned_cols=193 Identities=20% Similarity=0.173 Sum_probs=142.9
Q ss_pred CCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHHHHHHHHHHcCCCCH
Q 000785 981 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPL 1060 (1287)
Q Consensus 981 ~~~VGgKAanLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L~~IR~~I~~~~lP~ 1060 (1287)
.-.+|+||++|+.|++++ .+++||+++++|...+.+ . ....+ +.|+... +
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~-----~~~~~---------------~~i~~~~-----~- 54 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---N-----KDKVL---------------EEIQNSF-----P- 54 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---C-----HHHHH---------------HHHHHhc-----C-
Confidence 347899999999999976 689999999999874422 1 11111 1111111 0
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCcc---------HHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceEEEEEe
Q 000785 1061 SLIYELKNKMRSSG-------MPWPGDEG---------WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQE 1124 (1287)
Q Consensus 1061 eL~~eL~~a~RSSg-------~s~AG~~g---------~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQe 1124 (1287)
.-.-++|||+ .||||+|. .+++..||++||||+++ ++ .|||+||+
T Consensus 55 ----~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 55 ----ADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred ----CCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 0024578875 47999881 55999999999999766 22 38999999
Q ss_pred eeC-CceeEEEEecCCCCCCCcceeeecccCccccccccccCCCceEEEecCCCCCCcccccccccccccCCCceeeecC
Q 000785 1125 TIC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSD 1203 (1287)
Q Consensus 1125 mV~-ad~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~ig~~~~k~li~rsd 1203 (1287)
||. +.+|||+||+||.+|++..+...+++|+||.||+|.. +|+.+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998665544556999999999975 55544432110
Q ss_pred CCCcccccccCCCeeeeeecCCccccccccCCCCCCCCcccchHHHHHHHHHHHHHHHhcCC-CeeEEEEE-ECCeEEEE
Q 000785 1204 SNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY-PQDIEGVL-KDGLIYVV 1281 (1287)
Q Consensus 1204 snGedLe~~ag~G~~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~rLa~la~~IE~~fG~-PQDIEwai-~dg~LyIL 1281 (1287)
.++++++. +++|+++++.||++||+ |||||||+ .+|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01233333 78999999999999986 99999999 58999999
Q ss_pred eeccCC
Q 000785 1282 QARPQM 1287 (1287)
Q Consensus 1282 QaRPqv 1287 (1287)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999973
No 11
>PLN02784 alpha-amylase
Probab=99.92 E-value=3.8e-25 Score=271.98 Aligned_cols=130 Identities=25% Similarity=0.481 Sum_probs=118.0
Q ss_pred HhhcCCCcceeeeeeecc-eE-----EEEEE-EeeCCceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCccc
Q 000785 246 ENSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSK 316 (1287)
Q Consensus 246 ~~~~~~~~v~~~k~f~~~-~e-----i~V~v-~~~~g~~~V~v~td~~~~lvLHWGv~~~~--~~eW~~PP~~~~P~~S~ 316 (1287)
.+..+.++|+++|+|+++ .| |.|++ ++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+
T Consensus 68 ~~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~ 147 (894)
T PLN02784 68 VETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSI 147 (894)
T ss_pred eeccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcE
Confidence 345568999999999999 66 44555 77899999999999999999999999987 69999999999999999
Q ss_pred cc-cceeeeeeecccCCCceeeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 000785 317 MV-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (1287)
Q Consensus 317 ~~-~~A~eT~f~~~~~~~~~~~~-lei~l~~~~~~gi~FVLk~--~~~W~k~~G~DF~V~l~~~ 376 (1287)
.+ ++||||||++.+.++.++++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 148 ~~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 148 AIKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred EecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 98 89999999999888888886 899885 899999999999 5999999999999999975
No 12
>PLN02316 synthase/transferase
Probab=97.14 E-value=0.016 Score=76.28 Aligned_cols=90 Identities=13% Similarity=0.300 Sum_probs=57.2
Q ss_pred EEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---cccEEEEEEecCC
Q 000785 23 LQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIELRDP 95 (1287)
Q Consensus 23 ~~~~~~~~~~g~~~~v~~~~~~~----~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~---g~~~~v~ie~~d~ 95 (1287)
+-|.=.-...|+.++|-+-..+. ..++++|=|+ ..|...+ .-++++|+ ||.-..++.+++.
T Consensus 143 ~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~Vp~~ 210 (1036)
T PLN02316 143 LFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHIPKE 210 (1036)
T ss_pred EEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEecCcc
Confidence 33333334556666666554442 3456666433 4565532 22333343 7777777777665
Q ss_pred cceeEEEEEEeccccccccccCCcccccCCC
Q 000785 96 KIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (1287)
Q Consensus 96 ~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~ 126 (1287)
+. .|+|||.|+ .+.|=+|+|.||+++++.
T Consensus 211 A~-~ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 211 AY-KMDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred ce-EEEEEEeCC-ccccccCCCCceEEEeCC
Confidence 55 499999998 678999999999999863
No 13
>PRK05849 hypothetical protein; Provisional
Probab=96.65 E-value=0.02 Score=73.79 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHH----HhhCchHHHhhhhcCccchhhccccHHHHhhhhhHH----HHHHHHhhHHH
Q 000785 756 ALQAKAILDRLQLVLA--ERSQTYQ----KKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPV 825 (1287)
Q Consensus 756 AL~~kA~ldR~rr~~~--~~~d~~~----~~~q~~a~~lG~~lg~e~~~v~~FtEe~IRas~~f~----lS~ll~~L~p~ 825 (1287)
...++..++++|..++ +++-... ...-.....+|..||+++.-+--++-+.|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888877 3332222 222333446788889877777667777676522110 11222211111
Q ss_pred HHHH----h--cCC-----------------CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCcccc--CC
Q 000785 826 LRKV----A--NLG-----------------CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEI--PV 880 (1287)
Q Consensus 826 lr~~----a--~~~-----------------~wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEI--P~ 880 (1287)
.++. . ... .=..++||.+.|.++++..-. . ....-.|||+..+|=.=+- ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1111 0 000 012379999999999987542 1 1123569999876421111 12
Q ss_pred CcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEEcCCceE
Q 000785 881 GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1287)
Q Consensus 881 ~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 938 (1287)
+++||||..-+ ..||.+++||.+|||-+.--.....+.+ .+|+.|.+....+.|.
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRIE 781 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEEE
Confidence 69999998776 8999999999999999654321112322 3688888877665443
No 14
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=96.28 E-value=0.097 Score=68.94 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=68.9
Q ss_pred eeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCccchhhhhcccCCceeEEecchH
Q 000785 838 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 915 (1287)
Q Consensus 838 lspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~ 915 (1287)
+++|.+.|.++++.+..+. ......|||+..+++. ..| ..+.||||..-+ .+||.+|.||..|||-++.-. +
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~-~ 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDPG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVE-N 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCHH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEccc-c
Confidence 6889999999998875543 2345679999987763 344 279999887665 999999999999999876443 2
Q ss_pred HHHHHhh-cCCCeEEEEEcCCceEE
Q 000785 916 ILRNLRL-KEGKAVSIRLKSTNLII 939 (1287)
Q Consensus 916 ~~~~l~~-l~Gk~V~l~vs~~~v~l 939 (1287)
. .+. .+|..|.+......|.+
T Consensus 847 ~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H---HhhcCCCCEEEEECCCCEEEE
Confidence 2 233 37999998877655544
No 15
>PRK08296 hypothetical protein; Provisional
Probab=95.86 E-value=0.012 Score=73.79 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCccchhhhhcccCCceeEEecc
Q 000785 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1287)
Q Consensus 836 qvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 913 (1287)
..++||.+.|.+++|.+..+.. ....+.|||+..++- +.+| ..+.||||..-. .+||.++.||..|||-+..-.
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP-~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~ 578 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSP-SWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTG 578 (603)
T ss_pred eecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCH-HHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCc
Confidence 4469999999999998865532 234578999986542 2244 269999998765 899999999999999876654
Q ss_pred hHHHHHHhhcCCCeEEEEEcCCceEE
Q 000785 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (1287)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l~vs~~~v~l 939 (1287)
. +.. +-.+|..|.+..+.+.|.+
T Consensus 579 ~-at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 579 N-ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred c-Hhh--hcCCCCEEEEECCCCEEEE
Confidence 2 221 2247999998887765554
No 16
>PLN02316 synthase/transferase
Probab=95.78 E-value=0.3 Score=64.91 Aligned_cols=88 Identities=14% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCcccccccccccccEEEEEEecCCcceeEEEEEEe
Q 000785 31 SIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKD 106 (1287)
Q Consensus 31 ~~g~~~~v~~~~~~----~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~g~~~~v~ie~~d~~i~ai~Fvl~d 106 (1287)
..|.+++|-.--.| .+.++.+|||.. .|.-..+.+ ..-+.++ .+.|+.-..+|.++.. .+-+.||+.|
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~~-A~~mDfVFsd 397 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPER-ALVLDWVFAD 397 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCCC-ceEEEEEEec
Confidence 34555554443333 377899999995 454433311 0112222 1137767776666644 5789999999
Q ss_pred c---cccccccccCCcccccCCC
Q 000785 107 G---IHDRWLRLNHGNFRIEIPE 126 (1287)
Q Consensus 107 e---~~~~W~k~~g~nf~v~l~~ 126 (1287)
+ ..+.|=+++|.|||++.+.
T Consensus 398 g~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 398 GPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred CCcccccccccCCCcceeeecCC
Confidence 7 3568999999999999874
No 17
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.63 E-value=0.012 Score=55.23 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCCeEEEEeCCCCcccc-C-CCcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEEc
Q 000785 862 RRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 933 (1287)
Q Consensus 862 ~~P~Ill~~~~~G~EEI-P-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs 933 (1287)
..++||+++..+-.+-. . .+++||||.+-. ++||.++.||.+|||.+..-.. ... .-.+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~--~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATE--AIKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHH--HSCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhh--ccCCCCEEEEECC
Confidence 46789999976555433 1 379999998875 8999999999999999776652 222 2236888887543
No 18
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.98 E-value=0.13 Score=49.28 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=37.6
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 000785 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1287)
Q Consensus 288 ~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~-~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~k~~ 365 (1287)
.+.||+|... |..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n~-----W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFNR-----WTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCCC-----CCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 4789999754 987764 12222110 00113345777766655 799999998 8999999
Q ss_pred CcceEEec
Q 000785 366 GENFFVGL 373 (1287)
Q Consensus 366 G~DF~V~l 373 (1287)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 19
>PRK05865 hypothetical protein; Provisional
Probab=93.59 E-value=0.14 Score=67.07 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=69.2
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCccchhhhhcccCCceeEEecc
Q 000785 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1287)
Q Consensus 836 qvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 913 (1287)
..++||.+.|.+++|.. .+ ......+.|||+...+-. .+| ..+.||||..-. .+||.++.||..|||-+.+-.
T Consensus 739 ~~~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp~-~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~ 813 (854)
T PRK05865 739 VGVCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDVG-YTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQ 813 (854)
T ss_pred eeccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCHH-HHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEccc
Confidence 34699999999999972 22 123356789999864311 123 269999998765 899999999999999987654
Q ss_pred hHHHHHHhhcCCCeEEEEEcCCceEEee
Q 000785 914 QNILRNLRLKEGKAVSIRLKSTNLIISD 941 (1287)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l~vs~~~v~l~~ 941 (1287)
. +.. .-.+|..|.+..+...|.+-+
T Consensus 814 ~-at~--~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 814 G-ATR--FLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred c-Hhh--cCCCCCEEEEECCCcEEEEec
Confidence 2 222 123899999988876666543
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=93.26 E-value=0.1 Score=65.76 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=69.1
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCccchhhhhcccCCceeEEecc
Q 000785 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1287)
Q Consensus 836 qvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 913 (1287)
+..+||.+.|.++++....+. .....+.|||++..+- +.+|. .+.||||..-. ..||.++.||.+|||-+..-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 456889999999998875542 2345688999986554 44552 79999998765 899999999999999977654
Q ss_pred hHHHHHHhhcCCCeEEEEEcCCce
Q 000785 914 QNILRNLRLKEGKAVSIRLKSTNL 937 (1287)
Q Consensus 914 ~~~~~~l~~l~Gk~V~l~vs~~~v 937 (1287)
.. .. .-.+|..|.+......|
T Consensus 562 ~~-~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 562 NA-TS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred ch-hh--ccCCCCEEEEECCCCEE
Confidence 22 22 22468988887765433
No 21
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.18 E-value=0.14 Score=66.81 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=68.6
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCccchhhhhcccCCceeEEe
Q 000785 834 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (1287)
Q Consensus 834 ~wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 911 (1287)
.=..++||.+.|.++++....+.. ....+.|||+...+- +++|. .+.||||..-. ..||.++.||+.|||-+..
T Consensus 356 ~G~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg 431 (782)
T TIGR01418 356 TGRAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVG 431 (782)
T ss_pred cCcccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEc
Confidence 345579999999999998876643 344577999985433 22442 79999998776 8999999999999998654
Q ss_pred cchHHHHHHhhcCCCeEEEEEcC
Q 000785 912 FDQNILRNLRLKEGKAVSIRLKS 934 (1287)
Q Consensus 912 ~d~~~~~~l~~l~Gk~V~l~vs~ 934 (1287)
-. +....+ .+|..|.+....
T Consensus 432 ~~-~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 432 TG-DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred cc-chhhcc--cCCCEEEEEcCC
Confidence 32 222222 369999988876
No 22
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=92.69 E-value=0.16 Score=63.15 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=65.8
Q ss_pred CCCcEEeeeeeEEEEEEE-ecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCccchhhhhcccCCcee
Q 000785 832 LGCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCF 908 (1287)
Q Consensus 832 ~~~wqvlspG~A~G~L~~-V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~ 908 (1287)
+..=..++||.+.|+++. .++..+. .....+.|||+...+ -++++. .+.||||..-. ..||.++.||++|||-
T Consensus 350 l~~G~~as~G~a~G~V~~~~~~~~~~--~~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~ 425 (530)
T PRK05878 350 LAKGLPACPGVVSGTAYTDVDEALDA--ADRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVA 425 (530)
T ss_pred eccCeeccCceEEEEEEECHHHHHHH--hhccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCE
Confidence 344566899999999864 2222111 122346788887542 222442 69999998776 8999999999999999
Q ss_pred EEecchHHHHHHhhcCCCeEEEEEcCCceE
Q 000785 909 ATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1287)
Q Consensus 909 at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 938 (1287)
+..-... ...+ .+|..|.+......|.
T Consensus 426 VvG~~~~-~~~~--~~G~~VtvDg~~G~V~ 452 (530)
T PRK05878 426 VVGCGAG-VAAA--LAGKEITVDGYEGEVR 452 (530)
T ss_pred EEcccch-hhcc--CCCCEEEEECCCCEEE
Confidence 8754322 2223 4699998877654443
No 23
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=92.69 E-value=0.13 Score=67.10 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=67.6
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEecCCCCCccchhhhhcccCCceeEE-
Q 000785 834 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT- 910 (1287)
Q Consensus 834 ~wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at- 910 (1287)
.=..++||.++|.++++....+.. ....+.|||++..+= ++++ ..+.||||..-. ..||.++.||++|||-+.
T Consensus 358 ~G~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg 433 (795)
T PRK06464 358 EGRAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVG 433 (795)
T ss_pred eCcccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEc
Confidence 344578999999999998766543 234567888875422 3333 269999998765 899999999999999743
Q ss_pred ecchHHHHHHhhcCCCeEEE---EEcCCceEEe
Q 000785 911 CFDQNILRNLRLKEGKAVSI---RLKSTNLIIS 940 (1287)
Q Consensus 911 ~~d~~~~~~l~~l~Gk~V~l---~vs~~~v~l~ 940 (1287)
|.+ .... -.+|..|.+ ......|...
T Consensus 434 ~~~--~~~~--l~~G~~v~v~~~Dg~~G~v~~~ 462 (795)
T PRK06464 434 TGN--ATEV--LKDGQEVTVSCAEGDTGYVYEG 462 (795)
T ss_pred cCc--ccce--ecCCCEEEEEeccCCCcEEEeC
Confidence 333 2222 236999988 5544444443
No 24
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.65 E-value=0.16 Score=62.39 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEE
Q 000785 862 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (1287)
Q Consensus 862 ~~P~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~v 932 (1287)
+.|.|||++ |+.| +|.||+|..-. ..||.+++||.+|||-+.=-. +.+. .-.+|..|-+..
T Consensus 395 ~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~-~~~~--~~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQG-EKLY--AIQPEETLTLDV 464 (473)
T ss_pred CCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcch-hhHh--hccCCCEEEEEC
Confidence 468899987 5554 69999998776 899999999999999744322 1222 224688888877
Q ss_pred cCCceEE
Q 000785 933 KSTNLII 939 (1287)
Q Consensus 933 s~~~v~l 939 (1287)
....+.+
T Consensus 465 ~~G~v~v 471 (473)
T PRK11377 465 KTQRLNR 471 (473)
T ss_pred CCCEEEe
Confidence 6655543
No 25
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=91.93 E-value=0.15 Score=66.85 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=66.7
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCccchhhhhcccCCceeEEe
Q 000785 834 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (1287)
Q Consensus 834 ~wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 911 (1287)
.=...|||.|+|++++...-..-. .....+.|||...+ --++++- .+.||||..-. ..||.+|.||++|||-++.
T Consensus 396 ~G~~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~et-~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG 472 (879)
T PRK09279 396 KGLPASPGAATGKIVFTADEAEAL-AARGEKVILVRPET-SPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVG 472 (879)
T ss_pred CCcccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECCC-CHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEec
Confidence 334569999999997743321111 12235678877743 3334442 58899998776 8999999999999999654
Q ss_pred cchHHHH---------HHhhcCCCeEEEEEcCCceEEee
Q 000785 912 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 941 (1287)
Q Consensus 912 ~d~~~~~---------~l~~l~Gk~V~l~vs~~~v~l~~ 941 (1287)
-....++ .-.-.+|..|.+..+...|...+
T Consensus 473 ~~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~ 511 (879)
T PRK09279 473 AGALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGE 511 (879)
T ss_pred cCcceEecccCEEEECCEEecCCCEEEEECCCCEEEECC
Confidence 3311110 11224688888887776665544
No 26
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=91.66 E-value=0.48 Score=45.45 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=40.3
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCcccccccccccccEEEEEEecCCcceeEEEEEEeccccccccccCCccccc
Q 000785 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (1287)
Q Consensus 46 ~~~l~lHWGv~~~~~~~W~~P~~-~P-k~~a~~Tpf~~~g~~~~v~ie~~d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~ 123 (1287)
+..+.||+|. +.|..++. .| +..+ + ..++....+|+++..+ ..|+|||+|. .+.|=.++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~a-~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPEDA-YVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TTT-SEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCCc-eEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57977765 22 1111 1 1156677778776544 4799999998 899999999999987
Q ss_pred C
Q 000785 124 I 124 (1287)
Q Consensus 124 l 124 (1287)
+
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 27
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=90.54 E-value=0.28 Score=64.42 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=67.3
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCccchhhhhcccCCceeEEe
Q 000785 834 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 911 (1287)
Q Consensus 834 ~wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 911 (1287)
.=...+||.++|++++...-.... .....+.|||....+ -++++- .+.||||..-. ..||.++.||++|||-++.
T Consensus 390 ~G~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG 466 (856)
T TIGR01828 390 KGLPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSG 466 (856)
T ss_pred cCcccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEc
Confidence 334579999999997763321110 122456788887542 223442 68999998876 8999999999999999664
Q ss_pred cchHHHH---------HHhhcCCCeEEEEEcCCceEEee
Q 000785 912 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 941 (1287)
Q Consensus 912 ~d~~~~~---------~l~~l~Gk~V~l~vs~~~v~l~~ 941 (1287)
-....++ .-.-.+|..|.+..+...|...+
T Consensus 467 ~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~ 505 (856)
T TIGR01828 467 CEELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGE 505 (856)
T ss_pred ccccccccccceeeeCCeEecCCCEEEEECCCCEEEECC
Confidence 4321111 11224688888877765565543
No 28
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=88.89 E-value=0.53 Score=59.41 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCCeEEEEeCCCCcc--ccC-CCcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEEcCCceE
Q 000785 862 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1287)
Q Consensus 862 ~~P~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 938 (1287)
..|.|||++..+-.+ .++ .+|.||||..-. ..||.+++||++|||-+..-. +.... -.+|..|.+......|.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEEE
Confidence 457788887543322 111 269999998776 899999999999999765443 22222 23699999888877777
Q ss_pred EeecC
Q 000785 939 ISDIS 943 (1287)
Q Consensus 939 l~~~~ 943 (1287)
+.+.+
T Consensus 229 ~~P~~ 233 (575)
T PRK11177 229 VNPTN 233 (575)
T ss_pred ECCCH
Confidence 76643
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=88.10 E-value=0.69 Score=58.35 Aligned_cols=76 Identities=22% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEEcCCce
Q 000785 862 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1287)
Q Consensus 862 ~~P~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v 937 (1287)
..|.|||++..+=. ++. .++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.|
T Consensus 152 ~~~~IlVa~~l~Ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v 226 (565)
T TIGR01417 152 QDEVILVAEDLTPS-ETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIV 226 (565)
T ss_pred CCCeEEEecCCCHH-HHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEE
Confidence 45778888743211 221 269999998765 899999999999999765543 22222 2379999998887777
Q ss_pred EEeec
Q 000785 938 IISDI 942 (1287)
Q Consensus 938 ~l~~~ 942 (1287)
.+.+.
T Consensus 227 ~~~P~ 231 (565)
T TIGR01417 227 IFNPS 231 (565)
T ss_pred EeCCC
Confidence 77653
No 30
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=86.40 E-value=1 Score=56.14 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=56.5
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEE
Q 000785 862 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (1287)
Q Consensus 862 ~~P~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~v 932 (1287)
++|.||+++ |+.| .|.|++|..-+ ..||.++.||..+||-+.-.... ...+ .+|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v--~~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAV--KDGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhcc--cCCCEEEEEC
Confidence 467888887 6665 59999997766 88999999999999997766633 3333 3899999988
Q ss_pred cCCceEEeecC
Q 000785 933 KSTNLIISDIS 943 (1287)
Q Consensus 933 s~~~v~l~~~~ 943 (1287)
..+.+.+.+..
T Consensus 224 ~~G~vi~nP~~ 234 (574)
T COG1080 224 INGEVIVNPDE 234 (574)
T ss_pred CCCeEEECcCH
Confidence 88778887643
No 31
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=85.97 E-value=0.94 Score=44.81 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=69.0
Q ss_pred cEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEecCCCCCccchhhhhcccCCceeEEec
Q 000785 835 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 912 (1287)
Q Consensus 835 wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 912 (1287)
=|.|-.|.+.|+.++-++-.+... .+..-.||++.+.|+ |-+|. -..||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 5 GqgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~-d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 5 GQGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDA-DFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred ceeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCCh-hhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 366778899999988877555422 234567888887654 45664 68999999988 99999999999999997744
Q ss_pred chHHHHHHhhcCCCeEEEEEcCCceEEe
Q 000785 913 DQNILRNLRLKEGKAVSIRLKSTNLIIS 940 (1287)
Q Consensus 913 d~~~~~~l~~l~Gk~V~l~vs~~~v~l~ 940 (1287)
+.. .+.+ .+|..|.+..+- ++.++
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY~ 105 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVYE 105 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEEe
Confidence 422 2211 368877765542 45553
No 32
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=85.93 E-value=0.9 Score=59.14 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=52.2
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEEcCCce
Q 000785 862 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1287)
Q Consensus 862 ~~P~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v 937 (1287)
..|.|||++..+-. +++ .+|+||+|..-. ..||.++.||++|||.+.=-+ .... ...|..|.+....+.|
T Consensus 320 ~~~~Ilva~~l~ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTAT-LLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCHH-HHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 45778888742211 111 169999998876 889999999999999754222 2222 2359999988877778
Q ss_pred EEeecC
Q 000785 938 IISDIS 943 (1287)
Q Consensus 938 ~l~~~~ 943 (1287)
.+.+.+
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 777643
No 33
>PRK03955 hypothetical protein; Reviewed
Probab=80.44 E-value=7.3 Score=40.45 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=64.5
Q ss_pred EEeeeeeEEEEEEEeccccc----ccccc-----cC--------CCeEEEEeCCCCccc--------cCCC--cEEEecC
Q 000785 836 QVISPVEVCGFITSVNELIT----LQNKV-----YR--------RPTIIIASRITGEEE--------IPVG--VVAVLTP 888 (1287)
Q Consensus 836 qvlspG~A~G~L~~V~~l~~----v~~~~-----~~--------~P~Ill~~~~~G~EE--------IP~~--VaGVit~ 888 (1287)
..+++|.|.|.+.+.++-.. +.+.+ .. .-.||++....|--- +-.| =+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988764221 11111 01 235899988777621 1112 3688998
Q ss_pred CCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEEEEcCCceEE
Q 000785 889 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 939 (1287)
Q Consensus 889 ~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~l 939 (1287)
+.-+.|||-++-| +||.+...+ .+.|+ +|.+|++..+...|.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 8888999999999 999998666 33332 8999998765544544
No 34
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=67.94 E-value=6.5 Score=32.73 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=26.1
Q ss_pred hhhHhhhhhhhhhccCCCCCChhhhhHHHHHHHHHHHH
Q 000785 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (1287)
Q Consensus 138 e~lv~~~a~~~We~~gkp~~~~~~~~~~~~~a~~~l~~ 175 (1287)
++.|..+||-.||+.|.|+-.++ +....|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788899999999999987663 445556665543
No 35
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=63.96 E-value=3.3 Score=54.02 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=77.1
Q ss_pred chhhccccHHHHhhhhhHHHHHHHHhhHHHHHHHhcCCCcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCc
Q 000785 796 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 875 (1287)
Q Consensus 796 ~~~v~~FtEe~IRas~~f~lS~ll~~L~p~lr~~a~~~~wqvlspG~A~G~L~~V~~l~~v~~~~~~~P~Ill~~~~~G~ 875 (1287)
+|.++- .+-.+|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++.+..+. ......+||+....+.|
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~pd 377 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDPD 377 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCHH
Confidence 455554 5667888887777766655555 111112222 8999999999888776654 22234678888754333
Q ss_pred cccC-C-CcEEEecCCCCCccchhhhhcccCCceeEEecchHHHHHHhhcCCCeEEE
Q 000785 876 EEIP-V-GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSI 930 (1287)
Q Consensus 876 EEIP-~-~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l 930 (1287)
.+| . ...||+|.+-+ ..||-+|.||.+|+|-+.=-......-....+|..+.+
T Consensus 378 -~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~~~~~~~~~~~~~i~~~ 432 (740)
T COG0574 378 -WVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGSATKILKTLKDGTIVTL 432 (740)
T ss_pred -HhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCchhhhhhhhcccceEEEe
Confidence 344 2 35577765555 99999999999999985543323221122234444444
No 36
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=61.97 E-value=5.1 Score=50.09 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=53.1
Q ss_pred ccccCCCeEEEEeCCCCcc--ccC-CCcEEEecCCCCCccchhhhhcccCCceeEEe-cchHHHHHHhhcCCCeEEEEEc
Q 000785 858 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 933 (1287)
Q Consensus 858 ~~~~~~P~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~-~d~~~~~~l~~l~Gk~V~l~vs 933 (1287)
...+.++.|+|++..+-.| |.| ...+||++.+-. .-||+++.||.+|||.+-= -+- ..+..+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECC
Confidence 3456678899998654433 344 269999987754 7899999999999998654 331 123456766665544
Q ss_pred CCceEEee
Q 000785 934 STNLIISD 941 (1287)
Q Consensus 934 ~~~v~l~~ 941 (1287)
...+.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 55566655
No 37
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=38.48 E-value=53 Score=36.64 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=38.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHhcC--CCeeEEEEEE--CCeEEEEeeccC
Q 000785 1237 PMVGDKSFQTSVFSKIAETGKIIESLYG--YPQDIEGVLK--DGLIYVVQARPQ 1286 (1287)
Q Consensus 1237 plLtD~~~r~~ll~rLa~la~~IE~~fG--~PQDIEwai~--dg~LyILQaRPq 1286 (1287)
+.|+++. .++|.+.+.+|-+.+| ++--|||+++ ++++|++...|-
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 4577765 7899999999999988 6999999999 799999988774
No 38
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.78 E-value=1.4e+02 Score=34.27 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHccCCccHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 000785 466 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQRNNG---------CKTG---------MMEEW 526 (1287)
Q Consensus 466 ~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq-~ird~il~i~~~n~---------~k~g---------~~e~W 526 (1287)
+|++..+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ +.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888888999999999888777 777777887 55544433332211 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHHcCCChh
Q 000785 527 HQKLHNNTSPDDIIICEALLNYIRCGFKID 556 (1287)
Q Consensus 527 HQkLhnnttpddv~ICea~l~~l~~~~~~~ 556 (1287)
-++ ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 654
No 39
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=30.90 E-value=57 Score=37.17 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.9
Q ss_pred ChhhHHHHHhhC-CCChhhhhcCCCC
Q 000785 554 KIDAYWQTLNCH-GLSKQKLASYDRP 578 (1287)
Q Consensus 554 ~~~~yw~~l~~~-g~t~e~l~s~dr~ 578 (1287)
|.-++|..+-+. |+|+|++.|++ |
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-p 116 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-P 116 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-C
Confidence 667899999996 99999999999 6
No 40
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=26.77 E-value=50 Score=37.56 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHccCCccHHHHHHHHhhccCCCCCCCchhh
Q 000785 461 ISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRI 505 (1287)
Q Consensus 461 ~~~~q~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq~i 505 (1287)
+++-|..|...||+.+..+-..++..|--..||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 34567889999999999999999988888999999998 56554
No 41
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=24.01 E-value=1.3e+03 Score=33.51 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=67.9
Q ss_pred HHHHHhccccccCCChhhHHHHHHHHHhhccccCCCchhHHHHHHHHHhhhhh----ccCCchHHHHHHHHHHHHHHHHH
Q 000785 695 KTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSES----YRTNDAQWALQAKAILDRLQLVL 770 (1287)
Q Consensus 695 r~~ie~~~~~~~~~~~~~~~~~~~~~l~n~~ls~~~n~~l~~~l~~W~~~~~~----~~~~~~~wAL~~kA~ldR~rr~~ 770 (1287)
|+.||..+-.+.. +|||++-++.-|||||.+-.|.|-- -.|..=..|..+ .+.. ++ -.|||+|--.=.+-
T Consensus 393 rgfMeavVAQL~s-~peeL~QV~AsvLRNLSWRAD~nmK--kvLrE~GsVtaLa~~al~~~-kE--sTLKavLSALWNLS 466 (2195)
T KOG2122|consen 393 RGFMEAVVAQLIS-APEELLQVYASVLRNLSWRADSNMK--KVLRETGSVTALAACALRNK-KE--STLKAVLSALWNLS 466 (2195)
T ss_pred hhHHHHHHHHHhc-ChHHHHHHHHHHHHhccccccccHH--HHHHhhhhHHHHHHHHHHhc-cc--chHHHHHHHHhhhh
Confidence 3344443333333 5899999999999999999886531 111111122111 1111 11 24777877766665
Q ss_pred HHHHHHHHHh--hCchHHHhhhhcCcc--chhhccccHHHHhhhhhHHHHHHHHhhHHH
Q 000785 771 AERSQTYQKK--FQPSVKYLGCLLGVE--KYVIDNFTEELVRAQSEAVLSILINRFEPV 825 (1287)
Q Consensus 771 ~~~~d~~~~~--~q~~a~~lG~~lg~e--~~~v~~FtEe~IRas~~f~lS~ll~~L~p~ 825 (1287)
+..++.=..+ .+..-.+|-+.|.|+ .+...+.-- =+|++-.+|.+|..=.++
T Consensus 467 AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs---aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 467 AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES---AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred hcccccchhhhcccchHHHHHhhccccCCcchhhhhhc---CccHHHHHHhHhhccchH
Confidence 5444433332 456667888888888 444432211 245667777776655554
Done!