Query 000787
Match_columns 1286
No_of_seqs 526 out of 6419
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:19:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000787.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_558-562//hhsearch_pdb/000787hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 683.7 50.6 834 78-1093 379-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 625.9 53.8 833 78-1093 351-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 457.3 30.8 436 166-1095 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 454.7 36.5 444 114-1092 431-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 451.5 29.4 436 166-1095 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 446.4 34.0 215 164-413 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 439.6 29.4 216 855-1107 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 432.5 29.6 201 882-1107 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 371.2 13.8 214 853-1093 413-636 (1321)
10 4a82_A Cystic fibrosis transme 1.0 1 1 337.1 17.8 213 853-1093 337-559 (578)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=683.67 Aligned_cols=834 Identities=19% Similarity=0.251 Sum_probs=426.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC--CCCEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 676688999854205657599999999865321999--995079992249999872376767834788779999897676
Q 000787 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1286)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1286)
++++.+.++|+.++++.+++ +.+. ...+.. ....+|+|+|++|.|+.
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~-~~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSS-SKAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCS-SSCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCC-CCCCCCCCCCCCCEEEEEEEEECCC-------------------------
T ss_conf 99999999999999717853-----4566-6556567788876799985540799-------------------------
Q ss_pred HHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEEC
Q ss_conf 5168764443232041689958749999869999389999999479899997312999968237996666---3299964
Q 000787 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYIS 232 (1286)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~Lag~~~~~~~~~G~v~~nG~~~~~~~~~---~~~~yv~ 232 (1286)
+ ...++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++.... +.++||+
T Consensus 428 -----~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 428 -----R-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp -----S-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred -----C-CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCC
T ss_conf -----9-9874333318862288278998058985778888754565164---486157996501125999850466658
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78998999999999999757117872256769999998861999998867999997522133679999999990995323
Q 000787 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1286)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1286)
| |.++++.|||||+.|+. +...++.+.++++.... . | .+..|+++.
T Consensus 499 Q-~~~Lf~~TI~eNI~~g~----~~~~~~~v~~a~~~a~l---------------------~-----~---~i~~lp~G~ 544 (1321)
T 4f4c_A 499 Q-EPALFNCTIEENISLGK----EGITREEMVAACKMANA---------------------E-----K---FIKTLPNGY 544 (1321)
T ss_dssp S-SCCCCSEEHHHHHHTTC----TTCCHHHHHHHHHHTTC---------------------H-----H---HHHHSTTTT
T ss_pred C-CCEEECCCHHHHHHHHC----CCCHHHHHHHHHHHCCC---------------------H-----H---HHHCCCCCC
T ss_conf 7-53320786167886415----52209999999987565---------------------4-----6---887088888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHC
Q ss_conf 53334644677885676689999997239853422169879999999999999999878139829999943914699652
Q 000787 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1286)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~lf 392 (1286)
||.||+++.. ||||||||++||||++.+|+|++||||||+||+.++..|.++|+++. .++|+|+.. |+.++...+
T Consensus 545 ~T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiia--Hrls~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIA--HRLSTIRNA 619 (1321)
T ss_dssp SSEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEEC--SCTTTTTTC
T ss_pred CCEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEC--CCHHHHHHC
T ss_conf 6075589887-77778799999998725999899845544688789999999999984--798899973--638789868
Q ss_pred CCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHH--HHCCCHHHHHH--HHHCC---------CCC--CCC
Q ss_conf 9299963983999719667999998379978999996-78998--61181124455--42038---------987--668
Q 000787 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQ--EVTSRKDQRQY--WAHKE---------KPY--RFV 456 (1286)
Q Consensus 393 D~iilL~~G~ivy~G~~~~~~~~F~~~Gf~cp~~~~~-ADfl~--ev~s~~~~~~~--~~~~~---------~~~--~~~ 456 (1286)
|+|++|++|+|+++|+++++++ ..+. ++... ......+.... ..... ... ...
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~-----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMA-----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQAS 688 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHT-----------TTCHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred CEEEEEECCEEECCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9899963996513689999998-----------53279999996221222233233443322321112222234222222
Q ss_pred CHHHHHHHHHHCHHHHH----HHHHHCCCCCCCCHH--HCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99899999982511244----787513976665010--0011-3565678589999999999999962053899999999
Q 000787 457 TVQEFAEAFQSFHVGQK----ISDELRTPFDKSKSH--RAAL-TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQ 529 (1286)
Q Consensus 457 ~~~e~~~~~~~s~~~~~----~~~~l~~~~~~~~~~--~~~l-~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~ 529 (1286)
..++.....+.+..+.. ..++........... +... .......+.+ +-+...+..+..++.-++.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 760 (1321)
T 4f4c_A 689 EMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMST 760 (1321)
T ss_dssp ---------------------------CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 21102211101321245677402577753154038999999997078631099--------9999987789999999999
Q ss_pred HHHHHHHH------HHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHCCCCCCHHHH
Q ss_conf 99999999------988724458-88643354212468899999999--9687999998710224566411555590337
Q 000787 530 IAFVAVVY------MTLFLRTKM-HKDTVTDGGIFAGATFFAITMVN--FNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600 (1286)
Q Consensus 530 ~~i~a~i~------gtif~~~~~-~~~~~~~~~~~~g~lff~i~~~~--~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay 600 (1286)
.++.+.+. ..-++.... +.........+.+.+|+.+.... +..+...........+
T Consensus 761 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~--------------- 825 (1321)
T 4f4c_A 761 ATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESL--------------- 825 (1321)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf 99999999999999999998751793455667899999999999999999999999999999999---------------
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHH----HCCCHHHH
Q ss_conf 88899986019999899997665333578773678999999999---------999999999999977----13647889
Q 000787 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLL---------GVNQMASALFRFIAV----TGRNMVVA 667 (1286)
Q Consensus 601 ~la~~i~~iP~~~~~~~i~~~i~Y~~~Gl~~~~~~ff~~~l~l~---------l~~~~~~slf~~iaa----~~~~~~iA 667 (1286)
..++-..++..++-..+.||-.- ....|+....+.-.. ........++.++++ ..-+..++
T Consensus 826 -----~~~lr~~l~~~il~~~~~ffd~~-~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 826 -----TRDLRNKLFRNVLSQHIGFFDSP-QNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp -----HHHHHHHHHHHHHTSCSSSTTSG-GGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -----HHHHHHHHHHHHHCCCCHHHCCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
T ss_conf -----99999999888734993332167-888488885025059999999999999999986537777022137868999
Q ss_pred HHHHHHHHHHHHHHHEECC----CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9999999999998640104----856657889999855299999999999861289654445788640346655015855
Q 000787 668 NTFGSFALLVLLSLGGFIL----SREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFF 743 (1286)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i----~~~~ip~w~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~ 743 (1286)
.. .+.+++++.+..++. ........-.... ...+..++ ..|...++.++..
T Consensus 900 lv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~--------------------l~gi~tIra~~~e 954 (1321)
T 4f4c_A 900 LL--IIAILPIVAFGQYLRGRRFTGKNVKSASEFAD---SGKIAIEA--------------------IENVRTVQALARE 954 (1321)
T ss_dssp HH--HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH---HHHHHHHH--------------------HHTHHHHHHTTTH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------------------HHHHHHHHHCCCH
T ss_conf 99--99988899999999999999999999999888---98899999--------------------9627988861414
Q ss_pred CCC-------------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCC-CCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 456-------------------21578899999999-999999999988129888-886201010112211112478643
Q 000787 744 AHE-------------------YWYWLGLGALFGFV-LLLNFAYTLALTFLDPFE-KPRAVITEEIESNEQDDRIGGNVQ 802 (1286)
Q Consensus 744 ~~~-------------------~~~w~~~g~L~~~~-i~f~~~~~l~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1286)
... .+.+...+...... +...+.++++........ .............
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~----------- 1023 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYA----------- 1023 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-----------
T ss_conf 889999999999999999999999999999999999999999998757887537654214789999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHCCCC-CCCCCCCCCCCCEEEEECEEEEEECCCHHHHCCCCCCC
Q ss_conf 33457989888888988754454564100-13443202788-77886667778135781204475156101432434685
Q 000787 803 LSTLGGSSNHNTRSGSTDDIRGQQSSSQS-LSLAEAEASRP-KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 880 (1286)
Q Consensus 803 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~ 880 (1286)
+............. .+ ........... .......+..+ .......+.....++|+||++.|+..+ .
T Consensus 1024 ~~~~~~~l~~~~~~-~~-~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~----------~ 1091 (1321)
T 4f4c_A 1024 ITISTSTLGFATSY-FP-EYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERP----------E 1091 (1321)
T ss_dssp HHTTTSSTTGGGGH-HH-HHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSC----------S
T ss_pred HHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC----------C
T ss_conf 98778899999999-99-999999999989998607665777667787888888189998798579999----------8
Q ss_pred EEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HCCCCEEEEECCCCCCCCCCC
Q ss_conf 69944353333698099998269994888996460897786379899995944881---001245899615998999999
Q 000787 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 957 (1286)
Q Consensus 881 ~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 957 (1286)
..+|+|+|+.++||+.+||+|+||||||||+++|.|... +.+|.|.+||.+... ..+++.++||+|++.++. -|
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gT 1168 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CS 1168 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CC
T ss_conf 821245169988989999989999819999999956863--899789999998654999999854599878997327-23
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999998863069999988999999999998399753-------23324799988789889999999999960998789
Q 000787 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1286)
Q Consensus 958 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iLl 1030 (1286)
++||+.|+. .+.+.++ +.++++++..++.+. .|+.+|..| ..||||||||++|||+|+++|+||+
T Consensus 1169 IreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1169 IAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp HHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHCCC---CCCCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999974549---9999999----9999999982984999717678999823889-1569999999999999971799899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 929999999999999999999987389989999269758999742879899259499995799
Q 000787 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1286)
Q Consensus 1031 LDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1286)
||||||+||+.+...|++.+++.. .|+|+|+++|+++. ...+|++++|++ |+++.+|+.
T Consensus 1241 LDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp EESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEEC-CEEEEECCH
T ss_conf 968111578999999999999973-99989996068999--996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=625.89 Aligned_cols=833 Identities=19% Similarity=0.251 Sum_probs=404.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCCEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6766889998542056575999999998653219--99995079992249999872376767834788779999897676
Q 000787 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVG--IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1286)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1286)
.+.+.+..+|+.++.+..++ ... ....+ .+....+++|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPS-----IDS-FSKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCC-----CSS-CCSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCC-CCCCCCCCCCCCCEEEEEEEEEECCC-------------------------
T ss_conf 99999999999999728986-----776-66567777777771899998997699-------------------------
Q ss_pred HHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 516876444323204168995874999986999938999999947989999731299996823799666---63299964
Q 000787 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1286)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~Lag~~~~~~~~~G~v~~nG~~~~~~~~---~~~~~yv~ 232 (1286)
+ ...++|+|+|+.++||+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+
T Consensus 400 -----~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 400 -----R-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp -----T-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred -----C-CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEEC
T ss_conf -----9-9871012545897599889998999997999999980788999---738999999877579999986548986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78998999999999999757117872256769999998861999998867999997522133679999999990995323
Q 000787 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1286)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1286)
|+. +++..||+||+.|+.. ....+.+.++++.... .+ .+..|++..
T Consensus 471 Q~~-~l~~~ti~eNi~~g~~----~~~~~~~~~~~~~~~~--------------------------~~---~i~~l~~g~ 516 (1284)
T 3g5u_A 471 QEP-VLFATTIAENIRYGRE----DVTMDEIEKAVKEANA--------------------------YD---FIMKLPHQF 516 (1284)
T ss_dssp SSC-CCCSSCHHHHHHHHCS----SCCHHHHHHHHHHTTC--------------------------HH---HHHHSTTGG
T ss_pred CCC-CCCCCCHHHHHHCCCC----CCCHHHHHHHHHHHCC--------------------------HH---HHHHCCCCC
T ss_conf 887-5377669999745798----9999999999998296--------------------------99---997465633
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHC
Q ss_conf 53334644677885676689999997239853422169879999999999999999878139829999943914699652
Q 000787 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1286)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~lf 392 (1286)
||.+|+.+. .||||||||++|||+++.+|++++|||||++||+.++..+.+.++... .++|+++ +.|... +...+
T Consensus 517 ~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~-~i~~~ 591 (1284)
T 3g5u_A 517 DTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLS-TVRNA 591 (1284)
T ss_dssp GCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHH-HHTTC
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHH-HHHCC
T ss_conf 450147878-659999999999999952999899979877779999999999999973--9998999-940778-99749
Q ss_pred CCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHH-HHH---HHCCCCCCCCCHHHHHHH-HHH
Q ss_conf 929996398399971966799999837997899999678998611811244-554---203898766899899999-982
Q 000787 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQR-QYW---AHKEKPYRFVTVQEFAEA-FQS 467 (1286)
Q Consensus 393 D~iilL~~G~ivy~G~~~~~~~~F~~~Gf~cp~~~~~ADfl~ev~s~~~~~-~~~---~~~~~~~~~~~~~e~~~~-~~~ 467 (1286)
|+|++|++|+++++|+++++++- .|. .+..+..-....... ... .................. ...
T Consensus 592 d~i~vl~~G~i~~~g~~~~l~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1284)
T 3g5u_A 592 DVIAGFDGGVIVEQGNHDELMRE---KGI-------YFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRR 661 (1284)
T ss_dssp SEEEECSSSCCCCEECHHHHHHT---TSH-------HHHHHHHTC-----------------------------------
T ss_pred CEEEEEECCEEEEECCHHHHHHC---CCH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999989999997889999867---877-------99999974300221113333332222234433333333200034
Q ss_pred CHHHHHHHHHHCCCCC--CCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHH
Q ss_conf 5112447875139766--6501000113565678589999999999999962053899999999999-------999999
Q 000787 468 FHVGQKISDELRTPFD--KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAF-------VAVVYM 538 (1286)
Q Consensus 468 s~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~i-------~a~i~g 538 (1286)
... ......+.. ................+.+..++. .++.+..+..-++..++ ...+.+
T Consensus 662 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1284)
T 3g5u_A 662 RST----RKSICGPHDQDRKLSTKEALDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFS 729 (1284)
T ss_dssp --------------------------CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 543----33445642233211024555313662589999998--------451579999999999999999999999999
Q ss_pred H---HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHH
Q ss_conf 8---8724458886433542124688999999999--6879999987102245664115555903378889998601999
Q 000787 539 T---LFLRTKMHKDTVTDGGIFAGATFFAITMVNF--NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613 (1286)
Q Consensus 539 t---if~~~~~~~~~~~~~~~~~g~lff~i~~~~~--~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~ 613 (1286)
. .|.... ..........+...+++.+....+ ..............+-.+-| ..+-..+...|+.+
T Consensus 730 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr---------~~l~~~ll~~~~~f 799 (1284)
T 3g5u_A 730 KVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLR---------YMVFKSMLRQDVSW 799 (1284)
T ss_dssp HHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHCCSHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCCHHH
T ss_conf 9999985568-5033677999999999999999999999999999999999999999---------99999998399888
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9899997665333578773678999999--------------99999999999999997713647889999999999999
Q 000787 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYA--------------LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLL 679 (1286)
Q Consensus 614 ~~~~i~~~i~Y~~~Gl~~~~~~ff~~~l--------------~l~l~~~~~~slf~~iaa~~~~~~iA~~~~~~~~l~~~ 679 (1286)
++. . ....++....+. ..+.... ....+.++.++.-+...+. ..++.++++
T Consensus 800 f~~-----------~-~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~-~~~~~~~i~~~~~~~~l~l--v~l~~~p~~ 864 (1284)
T 3g5u_A 800 FDD-----------P-KNTTGALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGTGIIISLIYGWQLTL--LLLAIVPII 864 (1284)
T ss_dssp HHS-----------C-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSSSHH--HHHHHHHHH
T ss_pred HCC-----------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 757-----------8-998899999999999999999999999999999-9999999999999699999--999999999
Q ss_pred HHHEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC--------------
Q ss_conf 864010485665788999985529999999999986128965444578864034665501585545--------------
Q 000787 680 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAH-------------- 745 (1286)
Q Consensus 680 l~~Gf~i~~~~ip~w~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~-------------- 745 (1286)
++.+++.. .+........--.+...+-...|.... ...++.++....
T Consensus 865 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~l~g--------------i~ti~a~~~e~~~~~~~~~~~~~~~~ 925 (1284)
T 3g5u_A 865 AIAGVVEM-----KMLSGQALKDKKELEGSGKIATEAIEN--------------FRTVVSLTREQKFETMYAQSLQIPYR 925 (1284)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT--------------CTTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999-----999999999999999999999999988--------------99999846599999999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCEEECCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---621578899999999999999-99998812988888620101011-22-1111247864333457989888888988
Q 000787 746 ---EYWYWLGLGALFGFVLLLNFA-YTLALTFLDPFEKPRAVITEEIE-SN-EQDDRIGGNVQLSTLGGSSNHNTRSGST 819 (1286)
Q Consensus 746 ---~~~~w~~~g~L~~~~i~f~~~-~~l~L~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 819 (1286)
....|.+ ...++......+ ..+.+.+-...- .....+.... .. ....... ..+..+... .+
T Consensus 926 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lv-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~ 992 (1284)
T 3g5u_A 926 NAMKKAHVFG--ITFSFTQAMMYFSYAAAFRFGAYLV-TQQLMTFENVLLVFSAIVFGA--MAVGQVSSF--------AP 992 (1284)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCC-SSSCSCSTTHHHHHHHHHHHH--HHHHHHTSS--------SC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH--HHHHHHHHH--------HH
T ss_conf 9999999999--9999999999999999999999999-909806999999999999999--999999999--------99
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCEE
Q ss_conf 75445456410013443202788--7788666777813578120447515610143243468569944353333698099
Q 000787 820 DDIRGQQSSSQSLSLAEAEASRP--KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897 (1286)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ 897 (1286)
..................++... ...+...+.....++++|+++.++..+ ...+|+|+|+.++|||++
T Consensus 993 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v 1062 (1284)
T 3g5u_A 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTL 1062 (1284)
T ss_dssp CSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC----------CCEEECCEEEEECCCCEE
T ss_conf 9999999999999998388766665556654567778579999899779999----------870020305997699889
Q ss_pred EEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 998269994888996460897786379899995944881---00124589961599899999999999998863069999
Q 000787 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974 (1286)
Q Consensus 898 al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~ 974 (1286)
||+|+||||||||+++|+|... +.+|+|.+||.+... ...++.++||+|++.+++ .||+||+.++... ...
T Consensus 1063 ~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~ 1136 (1284)
T 3g5u_A 1063 ALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVV 1136 (1284)
T ss_dssp EEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCC
T ss_pred EEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCC-CCHHHHHHCCCCC---CCC
T ss_conf 9988999978999999946867--899779899998000789999702689877874066-6699997466877---899
Q ss_pred CHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 9889999999999983997-------532332479998878988999999999996099878992999999999999999
Q 000787 975 DSETRKMFIDEVMELVELN-------PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047 (1286)
Q Consensus 975 ~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iLlLDEPTsgLD~~s~~~i~ 1047 (1286)
+.++ +.+.++..++. +-.|+.+|..| ..||||||||++|||+|+.+|+||+|||||+|||+.+...|+
T Consensus 1137 ~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~ 1211 (1284)
T 3g5u_A 1137 SYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211 (1284)
T ss_dssp CHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHH
T ss_pred CHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 9999----99999983959999727042456117888-933899999999999997499999986875557999999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 9999987389989999269758999742879899259499995799
Q 000787 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1286)
Q Consensus 1048 ~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1286)
+.+++. ..|+|||+++|+++. + ..+|++++|++ |+++..|+.
T Consensus 1212 ~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1212 EALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp HHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred HHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 999986-799989999558799-9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=457.28 Aligned_cols=436 Identities=23% Similarity=0.282 Sum_probs=309.3
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 23204168995874999986999938999999947989999731299---------9968237996-----666329996
Q 000787 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1286)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~Lag~~~~~~~~~G~v---------~~nG~~~~~~-----~~~~~~~yv 231 (1286)
.+|+++| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... .....++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47899899---999999999975711787225676999999886199999886799999752213367999999999099
Q 000787 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1286)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL 308 (1286)
.|.-...+ ..||+|++.... . ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~------~-------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD------E-------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC------C-------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHH------H-------------------------------------HHHHHHHHHHCCC
T ss_conf 32043130220050999963167------9-------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 53235333464467788567668999999723985342216987999999999999999987813982999994391469
Q 000787 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1286)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1286)
++..|..++ .|||||||||+||++|+.+|++|+|||||++||..+...+.+.|+++.. .+.| |+.+.|....+
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t-vIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKA-VLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCE-EEEECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998-99996485898
Q ss_pred HHHCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 96529299963983999719667999998379978999996789986118112445542038987668998999999825
Q 000787 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1286)
Q Consensus 389 ~~lfD~iilL~~G~ivy~G~~~~~~~~F~~~Gf~cp~~~~~ADfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s 468 (1286)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 11244787513976665010001135656785899999999999999620538999999999999999998872445888
Q 000787 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1286)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~i~a~i~gtif~~~~~~~ 548 (1286)
+. . +.... .+.
T Consensus 315 ----------------------------~~--~---------~~~i~------------------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGIN------------------------EFL------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHHH------------------------HHH------
T ss_pred ----------------------------HH--H---------HHHHH------------------------HHH------
T ss_conf ----------------------------32--7---------99999------------------------997------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 64335421246889999999996879999987102245664115555903378889998601999989999766533357
Q 000787 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1286)
Q Consensus 549 ~~~~~~~~~~g~lff~i~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~G 628 (1286)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 87736789999999999999999999999771364788999999999999986401048566578899998552999999
Q 000787 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1286)
Q Consensus 629 l~~~~~~ff~~~l~l~l~~~~~~slf~~iaa~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isP~~y~~ 708 (1286)
.|+..
T Consensus 326 -----------------------------------------------------~~~~~---------------------- 330 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK---------------------- 330 (607)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCH----------------------
T ss_conf -----------------------------------------------------51013----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 99999861289654445788640346655015855456215788999999999999999999881298888862010101
Q 000787 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1286)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~L~~~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~ 788 (1286)
... . .+... +..
T Consensus 331 ------------------~~~-------~---~~~~~------------------------------~~~---------- 342 (607)
T 3bk7_A 331 ------------------DEN-------V---RFRPY------------------------------EIR---------- 342 (607)
T ss_dssp ------------------TTT-------E---ECCSS------------------------------CCC----------
T ss_pred ------------------HHH-------H---HCCCC------------------------------CCC----------
T ss_conf ------------------455-------4---30121------------------------------234----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECC
Q ss_conf 12211112478643334579898888889887544545641001344320278877886667778135781204475156
Q 000787 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1286)
Q Consensus 789 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~v~y~~~~~ 868 (1286)
. ....+ . .. ......++++|+++.+.
T Consensus 343 --~-----------------------~~~~~-------------------~--~~------~~~~~~l~~~~l~~~~~-- 368 (607)
T 3bk7_A 343 --F-----------------------TKLSE-------------------R--VD------VERETLVEYPRLVKDYG-- 368 (607)
T ss_dssp --C-----------------------CCSTT-------------------S--CC------CCCCEEEEECCEEEECS--
T ss_pred --C-----------------------CCCCC-------------------C--CC------CCCCEEEEEECEEEEEC--
T ss_conf --5-----------------------65777-------------------5--44------46752899913098744--
Q ss_pred CHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECC
Q ss_conf 10143243468569944353333698099998269994888996460897786379899995944881001245899615
Q 000787 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1286)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q 948 (1286)
. ..|+++++.+++|+++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|
T Consensus 369 -----------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q 424 (607)
T 3bk7_A 369 -----------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQ 424 (607)
T ss_dssp -----------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEEC
T ss_conf -----------3-48993515327998999999999899999999966988--88628999----------027999805
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 99899999999999998863069999988999999999998399753233247999887898899999999999609987
Q 000787 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1286)
Q Consensus 949 ~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~i 1028 (1286)
+....+.+||.|++........ .....++++++.+++.+..+..+ ..||||||||+.||++|+.+|++
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 7667789849999975312587-------78999999998769933754992-----23799999999999999748998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 89929999999999999999999987-38998999926975899974287989925-949999579986
Q 000787 1029 IFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1286)
Q Consensus 1029 LlLDEPTsgLD~~s~~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~ 1095 (1286)
|+|||||+|||..++..+++.+++++ +.|.|||+++|++. .+...+|++++|.. .|+.+..|++..
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 99968744789999999999999999747989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=454.71 Aligned_cols=444 Identities=20% Similarity=0.253 Sum_probs=311.5
Q ss_pred CCCEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHH
Q ss_conf 99507999224999987237676783478877999989767651687644432320416899587499998699993899
Q 000787 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1286)
Q Consensus 114 ~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKST 193 (1286)
.+..++...|+++.+. ...+|+|+|+.+++|+.++|+|||||||||
T Consensus 431 ~~~~~L~~~~ls~~yg----------------------------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKST 476 (986)
T 2iw3_A 431 DEGEDLCNCEFSLAYG----------------------------------AKILLNKTQLRLKRARRYGICGPNGCGKST 476 (986)
T ss_dssp SSSCEEEEEEEEEEET----------------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEEEEEEEEC----------------------------------CEEEEECCEEEECCCCEEEEECCCCCCHHH
T ss_conf 3115248953899989----------------------------------987674126998189789999999987999
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999479899997312999968237996666329996478-99899999999999975711787225676999999886
Q 000787 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1286)
Q Consensus 194 LL~~Lag~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1286)
||++|+| |+| +|.+... ....+|++|+ +..++.+||.|++.+ ...+ .
T Consensus 477 LLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~--~-------------- 524 (986)
T 2iw3_A 477 LMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG--T-------------- 524 (986)
T ss_dssp HHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS--C--------------
T ss_pred HHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC--H--------------
T ss_conf 9999948---------986--7976635---41699973564324557809999998--6127--9--------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 1999998867999997522133679999999990995-323533346446778856766899999972398534221698
Q 000787 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1286)
Q Consensus 273 ~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL~-~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEpt 351 (1286)
...++.+++.+||+ +..+..++ .||||||||+.||++|+.+|++|+|||||
T Consensus 525 -----------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 525 -----------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp -----------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred -----------------------HHHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -----------------------99999999986998446439802-----07999999999999996499999997976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCCEEEECCCEEE-EECCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 79999999999999999878139829999943914699652929996398399-97196679999983799789999967
Q 000787 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV-YQGPRELVLEFFASMGFRCPKRKGVA 430 (1286)
Q Consensus 352 sgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~lfD~iilL~~G~iv-y~G~~~~~~~~F~~~Gf~cp~~~~~A 430 (1286)
+|||..+..++.+.|++ .+.|+ +.+.|...++.+++|+|++|.+|+++ |.|+.+++...
T Consensus 577 s~LD~~~~~~l~~~L~~----~g~tv-IivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~--------------- 636 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT----CGITS-ITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK--------------- 636 (986)
T ss_dssp TTCCHHHHHHHHHHHHH----SCSEE-EEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH---------------
T ss_pred CCCCHHHHHHHHHHHHH----CCCEE-EEEECCHHHHHHHCCEEEEEECCEEECCCCCHHHHHHH---------------
T ss_conf 67999999999999986----79989-99979889999868999999799442677999999861---------------
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89986118112445542038987668998999999825112447875139766650100011356567858999999999
Q 000787 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANIS 510 (1286)
Q Consensus 431 Dfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~ 510 (1286)
.+ .. .. +
T Consensus 637 --------------------~~-------------------------------------~~--~~-~------------- 643 (986)
T 2iw3_A 637 --------------------CP-------------------------------------AA--KA-Y------------- 643 (986)
T ss_dssp --------------------CG-------------------------------------GG--GG-S-------------
T ss_pred --------------------HH-------------------------------------HH--HH-H-------------
T ss_conf --------------------48-------------------------------------89--99-9-------------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 99999620538999999999999999998872445888643354212468899999999968799999871022456641
Q 000787 511 RELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQR 590 (1286)
Q Consensus 511 R~~~~~~R~~~~~~~r~~~~~i~a~i~gtif~~~~~~~~~~~~~~~~~g~lff~i~~~~~~~~~~l~~~~~~~~vf~kqr 590 (1286)
+ .+... ...
T Consensus 644 -------------------------------~--~l~~~---~~~----------------------------------- 652 (986)
T 2iw3_A 644 -------------------------------E--ELSNT---DLE----------------------------------- 652 (986)
T ss_dssp -------------------------------S--STTTC---CCC-----------------------------------
T ss_pred -------------------------------H--HHHHH---HHH-----------------------------------
T ss_conf -------------------------------8--64454---432-----------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 15555903378889998601999989999766533357877367899999999999999999999997713647889999
Q 000787 591 DFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670 (1286)
Q Consensus 591 ~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~Gl~~~~~~ff~~~l~l~l~~~~~~slf~~iaa~~~~~~iA~~~ 670 (1286)
T Consensus 653 -------------------------------------------------------------------------------- 652 (986)
T 2iw3_A 653 -------------------------------------------------------------------------------- 652 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999999986401048566578899998552999999999998612896544457886403466550158554562157
Q 000787 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYW 750 (1286)
Q Consensus 671 ~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w 750 (1286)
..+. .+ +.
T Consensus 653 ------------------------------------------------~~~p--~~--------------~~-------- 660 (986)
T 2iw3_A 653 ------------------------------------------------FKFP--EP--------------GY-------- 660 (986)
T ss_dssp ------------------------------------------------CCCC--CC--------------CC--------
T ss_pred ------------------------------------------------CCCC--CC--------------CC--------
T ss_conf ------------------------------------------------0356--55--------------54--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999999999999999999881298888862010101122111124786433345798988888898875445456410
Q 000787 751 LGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQ 830 (1286)
Q Consensus 751 ~~~g~L~~~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1286)
.
T Consensus 661 --------------------------------------------------------------------~----------- 661 (986)
T 2iw3_A 661 --------------------------------------------------------------------L----------- 661 (986)
T ss_dssp --------------------------------------------------------------------C-----------
T ss_pred --------------------------------------------------------------------C-----------
T ss_conf --------------------------------------------------------------------3-----------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 01344320278877886667778135781204475156101432434685699443533336980999982699948889
Q 000787 831 SLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 910 (1286)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTL 910 (1286)
. . .. +....-+..+|+++.++. ..+.+|+|+|+.+++|+++||+||||||||||
T Consensus 662 -----~--~---~~-----~~~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTL 715 (986)
T 2iw3_A 662 -----E--G---VK-----TKQKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTL 715 (986)
T ss_dssp -----T--T---CC-----STTSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHH
T ss_pred -----C--C---CC-----CCCCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHH
T ss_conf -----3--4---56-----678706999846998189-----------87413432279982897899989999879999
Q ss_pred HHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHHH------------CC---
Q ss_conf 964608977863798999959448810012458996159989----99999999999988630------------69---
Q 000787 911 MDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH----SPFVTIYESLLFSAWLR------------LS--- 971 (1286)
Q Consensus 911 l~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~lTV~E~l~f~a~lr------------~~--- 971 (1286)
+++|+|... +.+|+|.++|.. .+||++|+..+ ....|++|++.+.-... ..
T Consensus 716 LklLaGll~--P~sG~I~~~~~~--------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed 785 (986)
T 2iw3_A 716 INVLTGELL--PTSGEVYTHENC--------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINEND 785 (986)
T ss_dssp HHHHTTSSC--CSEEEEEECTTC--------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSC
T ss_pred HHHHHCCCC--CCCEEEEECCCC--------CEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
T ss_conf 999957988--886089986864--------2576313024332100114799998877504502555543321034355
Q ss_pred -------------------------------------------------CCC----------------------------
Q ss_conf -------------------------------------------------999----------------------------
Q 000787 972 -------------------------------------------------PEV---------------------------- 974 (1286)
Q Consensus 972 -------------------------------------------------~~~---------------------------- 974 (1286)
...
T Consensus 786 ~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~ 865 (986)
T 2iw3_A 786 AEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKE 865 (986)
T ss_dssp SSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54420001123201234444555431222002100025543200000123432344321016777666766554432455
Q ss_pred ------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf ------98899999999999839975-3-233247999887898899999999999609987899299999999999999
Q 000787 975 ------DSETRKMFIDEVMELVELNP-L-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046 (1286)
Q Consensus 975 ------~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iLlLDEPTsgLD~~s~~~i 1046 (1286)
.....+..++++++.++|.. . .+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+
T Consensus 866 ~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L 940 (986)
T 2iw3_A 866 ALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL 940 (986)
T ss_dssp HHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
T ss_conf 5430223234799999999976998054448980-----42399999999999999839999999798657799999999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 9999998738998999926975899974287989925949999579
Q 000787 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1286)
Q Consensus 1047 ~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~ 1092 (1286)
++.+++. |.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 941 ~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 941 SKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 9999974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=451.53 Aligned_cols=436 Identities=23% Similarity=0.290 Sum_probs=307.1
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 23204168995874999986999938999999947989999731299---------9968237996-----666329996
Q 000787 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1286)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~Lag~~~~~~~~~G~v---------~~nG~~~~~~-----~~~~~~~yv 231 (1286)
.+|+++| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.++... .....++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47899899---999999999975711787225676999999886199999886799999752213367999999999099
Q 000787 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1286)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL 308 (1286)
.|+....+ ..||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 53235333464467788567668999999723985342216987999999999999999987813982999994391469
Q 000787 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1286)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1286)
++..+..++ .|||||||||.||++|+.+|++|+|||||++||..+..++.+.|+++.. .+.| |+.+.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t-vi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKS-VLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE-EEEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5987-99994788999
Q ss_pred HHHCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 96529299963983999719667999998379978999996789986118112445542038987668998999999825
Q 000787 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1286)
Q Consensus 389 ~~lfD~iilL~~G~ivy~G~~~~~~~~F~~~Gf~cp~~~~~ADfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~s 468 (1286)
..++|+|++|.+|...|.- + ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~~--------------------------------------~---~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYGI--------------------------------------F---SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEEE--------------------------------------E---CCC----------------
T ss_pred HHHCCEEEEECCCCCCCCC--------------------------------------C---CCH----------------
T ss_conf 9768899998686324402--------------------------------------2---553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 11244787513976665010001135656785899999999999999620538999999999999999998872445888
Q 000787 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1286)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~i~a~i~gtif~~~~~~~ 548 (1286)
+. . +... .. +.
T Consensus 245 ----------------------------~~--~---------~~~~----------~~--------------~~------ 255 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNGI----------NE--------------FL------ 255 (538)
T ss_dssp ----------------------------EE--H---------HHHH----------HH--------------HH------
T ss_pred ----------------------------HH--H---------HHHH----------HH--------------HH------
T ss_conf ----------------------------55--8---------9999----------98--------------76------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 64335421246889999999996879999987102245664115555903378889998601999989999766533357
Q 000787 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1286)
Q Consensus 549 ~~~~~~~~~~g~lff~i~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~G 628 (1286)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 87736789999999999999999999999771364788999999999999986401048566578899998552999999
Q 000787 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1286)
Q Consensus 629 l~~~~~~ff~~~l~l~l~~~~~~slf~~iaa~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isP~~y~~ 708 (1286)
.|+..
T Consensus 256 -----------------------------------------------------~~~~~---------------------- 260 (538)
T 1yqt_A 256 -----------------------------------------------------RGYLK---------------------- 260 (538)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCC----------------------
T ss_conf -----------------------------------------------------40230----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 99999861289654445788640346655015855456215788999999999999999999881298888862010101
Q 000787 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1286)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~L~~~~i~f~~~~~l~L~~l~~~~~~~~~~~~~~ 788 (1286)
... .. .+.... ..
T Consensus 261 ------------------~~~--~~---~~~~~~---------------------------------~~----------- 273 (538)
T 1yqt_A 261 ------------------DEN--VR---FRPYEI---------------------------------KF----------- 273 (538)
T ss_dssp ------------------TTT--EE---CSSSCC---------------------------------CC-----------
T ss_pred ------------------HHH--HC---CCCCCC---------------------------------CC-----------
T ss_conf ------------------023--20---344455---------------------------------54-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECC
Q ss_conf 12211112478643334579898888889887544545641001344320278877886667778135781204475156
Q 000787 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1286)
Q Consensus 789 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~v~y~~~~~ 868 (1286)
. .+ . .. . . +.....++.+|+++.+.
T Consensus 274 --------------------------~--~~------------~---~~-~---~------~~~~~~l~~~~l~~~~~-- 298 (538)
T 1yqt_A 274 --------------------------T--KT------------G---ER-V---E------IERETLVTYPRLVKDYG-- 298 (538)
T ss_dssp --------------------------C--CS------------S---GG-G---S------SCCCEEEEECCEEEEET--
T ss_pred --------------------------C--CC------------C---CC-C---C------CCCCEEEEEEEEEEEEC--
T ss_conf --------------------------5--57------------7---65-5---6------67871899930799989--
Q ss_pred CHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECC
Q ss_conf 10143243468569944353333698099998269994888996460897786379899995944881001245899615
Q 000787 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1286)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q 948 (1286)
. ..|+++++.+++|+++||+|+||||||||+++|+|... +.+|+|.+ .+.+||++|
T Consensus 299 -----------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q 354 (538)
T 1yqt_A 299 -----------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQ 354 (538)
T ss_dssp -----------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEEC
T ss_conf -----------9-89990744128998999988999999999999967998--99718998----------746999826
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 99899999999999998863069999988999999999998399753233247999887898899999999999609987
Q 000787 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1286)
Q Consensus 949 ~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~i 1028 (1286)
+....+.+||.|++......... ..+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 77678888599999864036887-------8999999999749915653994-----44899999999999999728998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 899299999999999999999999873-8998999926975899974287989925-949999579986
Q 000787 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1286)
Q Consensus 1029 LlLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~ 1095 (1286)
|+|||||+|||..++..+++.++++++ .|.|||+++|++. ++...+|++++|.+ .|+.+..|++..
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99939801089999999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=446.37 Aligned_cols=215 Identities=21% Similarity=0.276 Sum_probs=152.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCEEEEEECCCC
Q ss_conf 43232041689958749999869999389999---------------------99947989999----731299996823
Q 000787 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTL----KVSGTVTYNGHD 218 (1286)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~Lag~~~~~~----~~~G~v~~nG~~ 218 (1286)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...|+. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 799666632999647899-------------------8999999999999757117872256769999998861999998
Q 000787 219 MDEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279 (1286)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~ 279 (1286)
.... +++.++||+|... .++.+||+|++.+......... ......
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~--------~~~~~~------- 173 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK--------EAQIAR------- 173 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH--------HHHHHH-------
T ss_conf 1025-500004651125667777753111123444333457859999997520364314--------567788-------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCH
Q ss_conf 86799999752213367999999999099532-35333464467788567668999999723985--3422169879999
Q 000787 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1286)
Q Consensus 280 d~d~~~~a~~~~~~~~~~~~d~il~~lgL~~~-~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~--vl~lDEptsgLDs 356 (1286)
. ..++..... .+++.+||++. .|..++ .|||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 174 -------~---~~~~~~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 174 -------L---ILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -------H---HHHHHHHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -------8---899999999-899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCCEEEE------CCCEEEEECCHHHHH
Q ss_conf 999999999999878139829999943914699652929996------398399971966799
Q 000787 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1286)
Q Consensus 357 ~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~lfD~iilL------~~G~ivy~G~~~~~~ 413 (1286)
.+..++.+.|+++.. .+.|+|+ +.|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4998999-9578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=439.57 Aligned_cols=216 Identities=21% Similarity=0.244 Sum_probs=167.0
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 35781204475156101432434685699443533336980999982699948889964608977863798999959448
Q 000787 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1286)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 934 (1286)
.+.+++++..+. . ..|+++++.+++|++++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE--
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--99818999984--
Q ss_pred CHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81001245899615998999999999999988630699999889999999999983997532332479998878988999
Q 000787 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1286)
Q Consensus 935 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrk 1014 (1286)
.++|++|+.......||+|++.+...... . .....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDAL----S--TSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTT----C--TTSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCC----C--HHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------56761400034547779999987553112----1--16999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECC
Q ss_conf 99999999609987899299999999999999999999873-89989999269758999742879899259-49999579
Q 000787 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1092 (1286)
Q Consensus 1015 rl~Ia~~L~~~P~iLlLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~g-G~~~y~G~ 1092 (1286)
|+.||++|+.+|++|+|||||+|||+.++..+++.++++++ .|.|||+++|++. ++...+|++++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 986501478888719
Q 000787 1093 LGRHSCHLISYFEAI 1107 (1286)
Q Consensus 1093 ~~~~~~~~~~yf~~~ 1107 (1286)
+..-...+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.55 Aligned_cols=201 Identities=17% Similarity=0.172 Sum_probs=154.7
Q ss_pred EEEECCCCCCCCC-----CEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCC
Q ss_conf 9944353333698-----09999826999488899646089778637989999594488100124589961599899999
Q 000787 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1286)
Q Consensus 882 ~iL~~vs~~i~~G-----~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 956 (1286)
..++++++.+.+| ++++|+||||||||||+++|+|... +.+|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 4468658997068514651899988889869999999965787--878858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999886306999998899999999999839975323324799988789889999999999960998789929999
Q 000787 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1286)
Q Consensus 957 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iLlLDEPTs 1036 (1286)
||+|++... .+. ... ....++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 999999999999999987-389989999269758999742879899259-49999579986501478888719
Q 000787 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPLGRHSCHLISYFEAI 1107 (1286)
Q Consensus 1037 gLD~~s~~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~g-G~~~y~G~~~~~~~~~~~yf~~~ 1107 (1286)
|||+.++..+++.+++++ +.|.|||+++|++. ++...+|++++|..+ |+.+..|++..--.....++..+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=371.19 Aligned_cols=214 Identities=28% Similarity=0.389 Sum_probs=179.7
Q ss_pred CCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 81357812044751561014324346856994435333369809999826999488899646089778637989999594
Q 000787 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1286)
Q Consensus 853 ~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 932 (1286)
...++|+|++++++..+ ...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP----------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSST----------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCCC----------CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 87679998554079999----------8743333188622882789980589857788887545651--64486157996
Q ss_pred CCCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 4881---001245899615998999999999999988630699999889999999999983997-------532332479
Q 000787 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGL 1002 (1286)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~ 1002 (1286)
+.+. ..+++.++||+|++.++. -|++||+.|+. ++.+. +.+.++++..++. +-.++.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 5011259998504666587533207-86167886415-----52209----99999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 99887898899999999999609987899299999999999999999999873899899992697589997428798992
Q 000787 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1286)
Q Consensus 1003 ~~~~~LSgGqrkrl~Ia~~L~~~P~iLlLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~ 1082 (1286)
.| ..||||||||++|||+++.+|+|++||||||+||+.+...+++.++++. .|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 98-8777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 59499995799
Q 000787 1083 RGGQEIYVGPL 1093 (1286)
Q Consensus 1083 ~gG~~~y~G~~ 1093 (1286)
+ |+++..|+.
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=337.12 Aligned_cols=213 Identities=24% Similarity=0.392 Sum_probs=173.5
Q ss_pred CCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 81357812044751561014324346856994435333369809999826999488899646089778637989999594
Q 000787 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1286)
Q Consensus 853 ~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 932 (1286)
+..++++|+++.++. +...+|+|+|+.+++|+++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEECCC-----------CCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE
T ss_conf 880799999997589-----------99741343379987999999989999859999999846788--99967999999
Q ss_pred CCCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC-------CCCCCC
Q ss_conf 4881---001245899615998999999999999988630699999889999999999983997532-------332479
Q 000787 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 1002 (1286)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~ 1002 (1286)
+... ..+++.+|||+|++.+++. ||+||+.++. +..+. +.+.++++..++.+.. ++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EHHHCCHHHHHHHEEEEECCCCCCCC-CHHHHHHCCC-----CCCCH----HHHHHHHHHHCCHHHHHHCCCHHHHHHCC
T ss_conf 84427899996006899289834764-5999985279-----99889----99999998809599997573301025306
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 99887898899999999999609987899299999999999999999999873899899992697589997428798992
Q 000787 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1286)
Q Consensus 1003 ~~~~~LSgGqrkrl~Ia~~L~~~P~iLlLDEPTsgLD~~s~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~ 1082 (1286)
.+ ..||||||||++|||+|+.+|++|+|||||++||+.++..+++.++++. .++|+|+++|+++. .+.+|++++|+
T Consensus 474 ~g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEE
T ss_conf 88-9679999999999999974999999978654579999999999999980-89979998317899--97199899998
Q ss_pred CCCEEEEECCC
Q ss_conf 59499995799
Q 000787 1083 RGGQEIYVGPL 1093 (1286)
Q Consensus 1083 ~gG~~~y~G~~ 1093 (1286)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
T ss_conf 9-989998889
Done!