BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000789
(1283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/1259 (41%), Positives = 762/1259 (60%), Gaps = 46/1259 (3%)
Query: 41 LFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGS-------------SDR- 86
+F +A D + M+VGT++AI G+A P M LIFG + +SF S +D+
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 87 ---SHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIG 143
+ + E++ A + + AG I A++QVS W + RQ +IR + I+ Q+IG
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 144 FFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLA 203
+FD GE+ R++ D I E +G+K+G F Q M+TFFGGF++ RGW L LV+LA
Sbjct: 158 WFDVHDV-GELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 204 CLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNK 263
P + ++ G A I+S + + AY++AG V E+ ++ IRTV +F G+K+ +E+YNN
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 264 LQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMT 323
L+ A R +++ + + I +G L + +Y LA WYG+ L+I K Y+ G V+ V +++
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 324 GGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFR 383
G S+GQ SP + AFA + AAY++F+ I KP ID + SG + I+G +E ++++F
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 384 YPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK 443
YP+R EVQI G +L V SG T ALVG SG GKST + L++R YDP G V IDG DI+
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 444 LQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL 503
+ ++++RE IG+VSQEP+LFAT++ ENI YG+E+ T EI A++ ANA FI KLP
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR 563
DT+ GE G QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE +VQ AL K R
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 564 TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDAL 623
TT+V+AHRL+T+RNAD+IA G IVE+G HDEL+++ +G Y +LV Q E E L
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIE--L 633
Query: 624 ATDADKLDSSFDILDKAMTXXXXXXXXXXXXXXXXXXXXXXXFGFTYGVPGPINVFETEE 683
+A K D LD + + GP +
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK--------------SICGPHDQDRKLS 679
Query: 684 GDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSI 743
+ E P S R+ LN E+P ++G A I+G + P F ++ S +
Sbjct: 680 TKEALDEDVP-------PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732
Query: 744 RMFFE--PEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKV 801
+F P + R++S ++L++L+LGII+ I Q + FG AG L +R+R + F+ +
Sbjct: 733 GVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 802 VHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWI 861
+ Q++SWFDDP N++G++ RL+ DA+ ++ G LA++ QNIA + G+II+ W
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 862 LAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKV 921
L ++LA+ P++ + G + K + G + K E + ++A +A+ + RTV S E+K
Sbjct: 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKF 912
Query: 922 MDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFK 981
+Y + + P +N +++ + G F F+ ++Y + A CF G+ LV TF V
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLL 972
Query: 982 VFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIE 1041
VF A+ A+ V Q S+ APD KA SA+ I I++ P+IDS +G+ + + G ++
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
V F YPTRP + + + L L + G+T+ALVG SG GKSTV+ L+ERFYDP +G V L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 1102 DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXX-XXXXXXSNAHN 1160
D E+ + + WLR Q+G+VSQEP+LF+ +I NIAYG +N H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
FI +LP Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 1221 ALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279
AL++ RT +V+AHRL+TI+NAD+I V++NG + E G+H L+ G Y S+V++
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA-QKGIYFSMVSVQ 1270
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/571 (39%), Positives = 334/571 (58%), Gaps = 5/571 (0%)
Query: 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKV-AVKFLYLAAGTGIAA 111
+VG AI +G P ++IF ++ F + + S + ++ FL L + I
Sbjct: 707 FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITF 766
Query: 112 FLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDT-ETTTGEVIGRMSGDTILIQEAMG 170
FLQ + GE R+R + K++LRQD+ +FD + TTG + R++ D ++ A G
Sbjct: 767 FLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATG 826
Query: 171 EKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAY 230
++ Q ++ G +++L GW L L+LLA +P I IAG ++S + + +
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKEL 886
Query: 231 SEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVI 290
+G + + + RTV S T E++ Y LQ+ YR A+++ V GI +
Sbjct: 887 EGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMY 946
Query: 291 GTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFE 350
+Y +G+ L+ ++ V+ V AI+ G M++GQ S +A +A +
Sbjct: 947 FSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIR 1006
Query: 351 TIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVG 410
I++ P+ID Y T G+ +EG ++ V F YP RP + + G SL V G T ALVG
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066
Query: 411 QSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLREN 470
SG GKSTV+ L+ERFYDP AG V +DG +IK+L ++W+R ++G+VSQEPILF S+ EN
Sbjct: 1067 SSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126
Query: 471 IAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528
IAYG + + +EI A + AN +FID LP +T G+ GTQLSGGQKQRIAIARA+
Sbjct: 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186
Query: 529 LKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGK 588
++ P ILLLDEATSALD ESE++VQ+AL K RT +V+AHRL+TI+NADLI V+ GK
Sbjct: 1187 VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGK 1246
Query: 589 IVEKGTHDELIKDPEGPYTQLVRLQEGSKEA 619
+ E GTH +L+ +G Y +V +Q G+K +
Sbjct: 1247 VKEHGTHQQLLAQ-KGIYFSMVSVQAGAKRS 1276
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/1259 (40%), Positives = 761/1259 (60%), Gaps = 46/1259 (3%)
Query: 41 LFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGS-------------SDR- 86
+F +A D + M+VGT++AI G+A P M LIFG + +SF S +D+
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 87 ---SHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIG 143
+ + E++ A + + AG I A++QVS W + RQ +IR + I+ Q+IG
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 144 FFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLA 203
+FD GE+ R++ D I E +G+K+G F Q M+TFFGGF++ RGW L LV+LA
Sbjct: 158 WFDVHDV-GELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 204 CLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNK 263
P + ++ G A I+S + + AY++AG V E+ ++ IRTV +F G+K+ +E+YNN
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 264 LQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMT 323
L+ A R +++ + + I +G L + +Y LA WYG+ L+I K Y+ G V+ V +++
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 324 GGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFR 383
G S+GQ SP + AFA + AAY++F+ I KP ID + SG + I+G +E ++++F
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 384 YPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKK 443
YP+R EVQI G +L V SG T ALVG SG GKST + L++R YDP G V IDG DI+
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 444 LQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGL 503
+ ++++RE IG+VSQEP+LFAT++ ENI YG+E+ T EI A++ ANA FI KLP
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR 563
DT+ GE G QLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE +VQ AL K R
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 564 TTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDAL 623
TT+V+AHRL+T+RNAD+IA G IVE+G HDEL+++ +G Y +LV Q E E L
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIE--L 633
Query: 624 ATDADKLDSSFDILDKAMTXXXXXXXXXXXXXXXXXXXXXXXFGFTYGVPGPINVFETEE 683
+A K D LD + + GP +
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK--------------SICGPHDQDRKLS 679
Query: 684 GDQGGAERTPLMIEKRQKLSMRRLAYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSI 743
+ E P S R+ LN E+P ++G A I+G + P F ++ S +
Sbjct: 680 TKEALDEDVP-------PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732
Query: 744 RMFFE--PEDKLRKDSRFWALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKV 801
+F P + R++S ++L++L+LGII+ I Q + FG AG L +R+R + F+ +
Sbjct: 733 GVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 802 VHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWI 861
+ Q++SWFDDP N++G++ RL+ DA+ ++ G LA++ QNIA + G+II+ W
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 862 LAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKV 921
L ++LA+ P++ + G + K + G + K E + ++A +A+ + RTV S E+K
Sbjct: 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKF 912
Query: 922 MDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFK 981
+Y + + P +N +++ + G F F+ ++Y + A F G+ LV TF V
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL 972
Query: 982 VFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIE 1041
VF A+ A+ V Q S+ APD KA SA+ I I++ P+IDS +G+ + + G ++
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
V F YPTRP + + + L L + G+T+ALVG SG GKSTV+ L+ERFYDP +G V L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 1102 DNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXX-XXXXXXSNAHN 1160
D E+ + + WLR Q+G+VSQEP+LF+ +I NIAYG +N H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
FI +LP Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ESE+VVQ+
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 1221 ALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279
AL++ RT +V+AHRL+TI+NAD+I V++NG + E G+H L+ G Y S+V++
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA-QKGIYFSMVSVQ 1270
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/571 (39%), Positives = 335/571 (58%), Gaps = 5/571 (0%)
Query: 53 MIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEVSKV-AVKFLYLAAGTGIAA 111
+VG AI +G P ++IF ++ F + + S + ++ FL L + I
Sbjct: 707 FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITF 766
Query: 112 FLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDT-ETTTGEVIGRMSGDTILIQEAMG 170
FLQ + GE R+R + K++LRQD+ +FD + TTG + R++ D ++ A G
Sbjct: 767 FLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATG 826
Query: 171 EKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAY 230
++ Q ++ G +++L GW L L+LLA +P I IAG ++S + + +
Sbjct: 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKEL 886
Query: 231 SEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVI 290
+G + + + RTV S T E++ Y LQ+ YR A+++ V GI +
Sbjct: 887 EGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMY 946
Query: 291 GTYGLAVWYGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFE 350
+Y A +G+ L+ ++ V+ V AI+ G M++GQ S +A +A +
Sbjct: 947 FSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIR 1006
Query: 351 TIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVG 410
I++ P+ID Y T G+ +EG ++ V F YP RP + + G SL V G T ALVG
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066
Query: 411 QSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLREN 470
SG GKSTV+ L+ERFYDP AG V +DG +IK+L ++W+R ++G+VSQEPILF S+ EN
Sbjct: 1067 SSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126
Query: 471 IAYGKEN--ATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAI 528
IAYG + + +EI A + AN +FID LP +T G+ GTQLSGGQKQRIAIARA+
Sbjct: 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186
Query: 529 LKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGK 588
++ P ILLLDEATSALD ESE++VQ+AL K RT +V+AHRL+TI+NADLI V+ GK
Sbjct: 1187 VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGK 1246
Query: 589 IVEKGTHDELIKDPEGPYTQLVRLQEGSKEA 619
+ E GTH +L+ +G Y +V +Q G+K +
Sbjct: 1247 VKEHGTHQQLLAQ-KGIYFSMVSVQAGAKRS 1276
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1279 (36%), Positives = 713/1279 (55%), Gaps = 61/1279 (4%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHL----------INSFGS 83
KV +L+ + + +L+ +GT+ A+ +G P M+++ G + IN+ GS
Sbjct: 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGS 117
Query: 84 S--------DRSHVVHEVSKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLK 135
+ ++ H+V V + + G A + V+C++ E+ R+R ++K
Sbjct: 118 TFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVK 177
Query: 136 TILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGW 195
+ILRQ+I +FDT +G + ++ + ++E G+K+G Q +S F GF+VA W
Sbjct: 178 SILRQEISWFDT-NHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSW 236
Query: 196 FLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQ 255
L LV+LA P + G ++A MS + R + Y++AG VVE+T+S IRTV S G +
Sbjct: 237 QLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296
Query: 256 AIEKYNNKLQVAYRAAVQQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEKGYNGGTVI 315
+E+Y+ ++ A +A V +G+ GI G + + ++ LA + G + + N G ++
Sbjct: 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDML 356
Query: 316 NVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEI 375
++M G M+LG P L Q AA ++E + RKP ID +G KI+G+I
Sbjct: 357 TTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDI 416
Query: 376 ELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVL 435
+ +V+F YP+RP+V I G +L V +G T ALVG SG GKST+ISL+ R+YD G++
Sbjct: 417 TVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT 476
Query: 436 IDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKF 495
IDG+D++ + L+++R+ + +VSQEP LF ++ ENI+ GKE T +E+ A ++ANA KF
Sbjct: 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
I LP G +T+ G+ GTQLSGGQKQRIAIARA+++NPKILLLDEATSALDAESE IVQ A
Sbjct: 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 556 LVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ-- 613
L K RTT+++AHRL+TIRNADLI G++VE G H L+ +G Y LV Q
Sbjct: 597 LDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTF 655
Query: 614 --------EGSKEAEDALA---TDADKLDSSFDILDKAMTXXXXXXXXXXXXXXXXXXXX 662
EG E+++A ++ + L +D M
Sbjct: 656 TDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITN-------- 707
Query: 663 XXXFGFTYGVPGPINVFETEEGDQGGAERTPLMIEKR--QKLSMRRLAYLNKPEFPVLLI 720
GP+ + E + R +E+ QK ++ + Y +P L I
Sbjct: 708 -----------GPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFI 756
Query: 721 GSIAAGIHGVIFPIFGLLLSSSIRMFF-EPEDKLRKDSRFWALIYLVLGIINLIAVPFQN 779
G A I G I+P + + +S + +F P D L + FWAL++LVL I
Sbjct: 757 GMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQ-GHFWALMFLVLAAAQGICSFLMT 815
Query: 780 YFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLA 839
+F G+A L R +R+ F V+ Q I +FD P N+SG + RL+TD +R+ + +
Sbjct: 816 FFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFS 875
Query: 840 LVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEAS 899
V+ + ++ AG+ +AF W +A +I+A+ P++ Y + + G + + + ++
Sbjct: 876 TVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSG 935
Query: 900 QVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNA 959
++A +A+ ++RTV + E+ + + +K + P K ++ + G +G + VLY N
Sbjct: 936 KIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNT 995
Query: 960 FCFYIGSVLVEHGKATFG--QVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEIL 1017
+ +G L+ T +V +V +A+TIS + ++ P+ KA + IF +L
Sbjct: 996 CAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055
Query: 1018 DSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGES 1077
KIDS G G I + V F YP RP+++I + L S+ G+T+ALVG S
Sbjct: 1056 RKISKIDSLSLAGEKKKLYGKVI-FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPS 1114
Query: 1078 GSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIA 1137
G GKSTV+AL+ERFYD G + +D E+ R Q+ +VSQEP LF+ +I NI
Sbjct: 1115 GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII 1174
Query: 1138 YG-KQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLK 1196
YG +N HNFI+ LP G+ET VG+RG QLSGGQKQRIAIARA+++
Sbjct: 1175 YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234
Query: 1197 NPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIA 1256
NPKILLLDEATSALD ESE+VVQ+AL+R RT +V+AHRL T+ NAD IAVV NG I
Sbjct: 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTII 1294
Query: 1257 EQGSHDALMKITDGAYASL 1275
E+G+H LM GAY L
Sbjct: 1295 EKGTHTQLMS-EKGAYYKL 1312
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 222/599 (37%), Positives = 323/599 (53%), Gaps = 28/599 (4%)
Query: 700 QKLSMRRL-AYLNKPEFPVLLIGSIAAGIHGVIFPIFGLLLSSSIRMF------------ 746
K+S+ +L Y E +L IG++ A I G P+ +L + F
Sbjct: 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGS 117
Query: 747 -FEPEDKLRKDSRF--------WALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLT 797
F P + + F W+ + +G+ + Y + ++ R+R
Sbjct: 118 TFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLY--VAEQMNNRLRREF 175
Query: 798 FEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFT 857
+ ++ QEISWFD N SG++ +L + ++ GD + + Q ++ G I+AFT
Sbjct: 176 VKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFT 233
Query: 858 ANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCS 917
+W L V+LAV+P+ + G+ K M F+ L Y +A +V + + SIRTV S
Sbjct: 234 HSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293
Query: 918 EEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFG 977
++ Y E K GV +G+ G FG + + A FYIG V G FG
Sbjct: 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFG 353
Query: 978 QVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVG 1037
+ F ++ + ++ + A+ +A+ I+E+LD KP IDSS G +
Sbjct: 354 DMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIK 413
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G I + V F YP+RPDV I R + L + +G+TVALVG SG GKST+I+L+ R+YD G
Sbjct: 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
+ +D +++ L +LR+ + +VSQEP LFN TI NI+ GK+ G +N
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMAN 532
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
A FI LP+GY T VG+RG QLSGGQKQRIAIARA+++NPKILLLDEATSALDAESE +
Sbjct: 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLV 1276
VQ AL++ RTT+++AHRL+TI+NAD+I KNG + E G H ALM G Y LV
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA-QQGLYYDLV 650
Score = 345 bits (886), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 207/590 (35%), Positives = 324/590 (54%), Gaps = 9/590 (1%)
Query: 34 QKVPFYKLFAFADKQDAVLMIVGTISAIGSGLAHPFMTLIFGHLINSFGSSDRSHVVHEV 93
QK +++ A + A+ + +G +A G +P ++ F +N F + + + + +
Sbjct: 736 QKTNLFEILYHA-RPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVF-AGNPADFLSQG 793
Query: 94 SKVAVKFLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDT-ETTTG 152
A+ FL LAA GI +FL + E +R + +L Q IGFFD+ + +G
Sbjct: 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASG 853
Query: 153 EVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAG 212
++ R++ D ++ A+ + I + + G +A GW +AL+++A LP +
Sbjct: 854 KISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQ 913
Query: 213 GSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAV 272
+ + + ++++G + + + +RTV + E E + KL + ++ A+
Sbjct: 914 YLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973
Query: 273 QQGMVSGIGLGVLMLTVIGTYGLAVWYGSKLIIEK--GYNGGTVINVIMAIMTGGMSLGQ 330
++ + G+ G + A G LII V+ V+ AI +LG
Sbjct: 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGF 1033
Query: 331 TSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEV 390
+ +A A +F +++ KID +G +K+ G++ ++V F YP RPE+
Sbjct: 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEI 1092
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450
+I G S V G T ALVG SG GKSTV++L+ERFYD GE+ IDG +IK L + R
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152
Query: 451 EKIGLVSQEPILFATSLRENIAYGKE--NATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
+I +VSQEP LF S+ ENI YG + + T ++ A LAN FI +LP+G +T G
Sbjct: 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVV 568
+ GTQLSGGQKQRIAIARA+++NPKILLLDEATSALD ESE++VQ+AL + RT +V+
Sbjct: 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272
Query: 569 AHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKE 618
AHRL T+ NAD IAVV G I+EKGTH +L+ + +G Y +L + Q K+
Sbjct: 1273 AHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTEKK 1321
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 222/533 (41%), Positives = 325/533 (60%), Gaps = 24/533 (4%)
Query: 100 FLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMS 159
FL AA I +L +G+R R+R +ILRQ++ FFD +T TGE+I R+S
Sbjct: 72 FLCGAAANAIRVYLM----QTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLS 126
Query: 160 GDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIM 219
DT L+ ++ E + ++ + G + LA +L+ +P + I +
Sbjct: 127 SDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL 186
Query: 220 SKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNK----LQVAYRAA-VQQ 274
K++ Q + ++A + E+ + +RTV +F E IEKY +K +Q+A + A +
Sbjct: 187 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 246
Query: 275 GMVSGIGL-GVLMLTVIGTYGLAVWYGSKLIIEKGY-NGGTVINVIMAIMTGGMSLGQTS 332
G GL G L++ L+V Y L++ + G + + +M G+S+G S
Sbjct: 247 GFFGATGLSGNLIV-------LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 299
Query: 333 PCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEK-IEGEIELRDVYFRYPARPEVQ 391
+ G A +++E ++R+PK+ P++ I EK +G +E ++V+F YPARPEV
Sbjct: 300 SFYSELMKGLGAGGRLWELLEREPKL-PFNEGVILNEKSFQGALEFKNVHFAYPARPEVP 358
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
IF FSL +PSG+ ALVG SGSGKSTV+SL+ R YDP +G + +DG DI++L W+R
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 452 KIGLVSQEPILFATSLRENIAYGKEN---ATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
KIG VSQEPILF+ S+ ENIAYG ++ T +EI+ E+ANA FI P+G +T+ G
Sbjct: 419 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVV 568
E G LSGGQKQRIAIARA+LKNPKILLLDEATSALDAE+E +VQ+AL ++M RT +V+
Sbjct: 479 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVI 538
Query: 569 AHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAED 621
AHRL+TI+NA+++AV+ QGKI E G H+EL+ P G Y +L+ Q AE+
Sbjct: 539 AHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISAAEN 591
Score = 319 bits (818), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 183/504 (36%), Positives = 288/504 (57%), Gaps = 14/504 (2%)
Query: 780 YFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLA 839
Y +G +++ R+R+ F ++ QE+++FD +G + RLS+D + + V ++L+
Sbjct: 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLS 141
Query: 840 LVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEAS 899
++ A + G+ + F + LA +L+V P + + ++++ + + +A+
Sbjct: 142 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT 201
Query: 900 QVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNG-----VRRGILSGAGFGFSFLVL 954
Q+A + +G++RTV +F E ++ Y K + ++ R G G + +VL
Sbjct: 202 QLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVL 261
Query: 955 YCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIF 1014
Y G +L+ T G++ + + S+ + K + ++
Sbjct: 262 SV-----LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLW 316
Query: 1015 EILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALV 1074
E+L+ +PK+ ++ + S GA+E + V F YP RP+V IF++ LSIPSG ALV
Sbjct: 317 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 376
Query: 1075 GESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRT 1134
G SGSGKSTV++L+ R YDP SG + LD ++ + WLR ++G VSQEP+LF+ +I
Sbjct: 377 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436
Query: 1135 NIAYGKQ--GGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192
NIAYG +NA FI P G+ T VGE+GV LSGGQKQRIAIAR
Sbjct: 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496
Query: 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKN 1252
A+LKNPKILLLDEATSALDAE+E +VQ+AL+R+M RT +V+AHRL+TIKNA+++AV+
Sbjct: 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQ 556
Query: 1253 GVIAEQGSHDALMKITDGAYASLV 1276
G I E G H+ L+ +G Y L+
Sbjct: 557 GKITEYGKHEELLSKPNGIYRKLM 580
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/525 (41%), Positives = 321/525 (61%), Gaps = 24/525 (4%)
Query: 100 FLYLAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMS 159
FL AA I +L +G+R R+R +ILRQ++ FFD +T TGE+I R+S
Sbjct: 103 FLCGAAANAIRVYLM----QTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLS 157
Query: 160 GDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIM 219
DT L+ ++ E + ++ + G + LA +L+ +P + I +
Sbjct: 158 SDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL 217
Query: 220 SKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNK----LQVAYRAA-VQQ 274
K++ Q + ++A + E+ + +RTV +F E IEKY +K +Q+A + A +
Sbjct: 218 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 277
Query: 275 GMVSGIGL-GVLMLTVIGTYGLAVWYGSKLIIEKGY-NGGTVINVIMAIMTGGMSLGQTS 332
G GL G L++ L+V Y L++ + G + + +M G+S+G S
Sbjct: 278 GFFGATGLSGNLIV-------LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 330
Query: 333 PCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEK-IEGEIELRDVYFRYPARPEVQ 391
+ G A +++E ++R+PK+ P++ I EK +G +E ++V+F YPARPEV
Sbjct: 331 SFYSELMKGLGAGGRLWELLEREPKL-PFNEGVILNEKSFQGALEFKNVHFAYPARPEVP 389
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
IF FSL +PSG+ ALVG SGSGKSTV+SL+ R YDP +G + +DG DI++L W+R
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 452 KIGLVSQEPILFATSLRENIAYGKENA---TDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
KIG VSQEPILF+ S+ ENIAYG ++ T +EI+ E+ANA FI P+G +T+ G
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVV 568
E G LSGGQKQRIAIARA+LKNPKILLLDEATSALDAE+E +VQ+AL ++M RT +V+
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVI 569
Query: 569 AHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
AH L+TI+NA+++AV+ QGKI E G H+EL+ P G Y +L+ Q
Sbjct: 570 AHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 317 bits (811), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 182/504 (36%), Positives = 287/504 (56%), Gaps = 14/504 (2%)
Query: 780 YFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLA 839
Y +G +++ R+R+ F ++ QE+++FD +G + RLS+D + + V ++L+
Sbjct: 115 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLS 172
Query: 840 LVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEAS 899
++ A + G+ + F + LA +L+V P + + ++++ + + +A+
Sbjct: 173 DGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT 232
Query: 900 QVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNG-----VRRGILSGAGFGFSFLVL 954
Q+A + +G++RTV +F E ++ Y K + ++ R G G + +VL
Sbjct: 233 QLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVL 292
Query: 955 YCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIF 1014
Y G +L+ T G++ + + S+ + K + ++
Sbjct: 293 SV-----LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLW 347
Query: 1015 EILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALV 1074
E+L+ +PK+ ++ + S GA+E + V F YP RP+V IF++ LSIPSG ALV
Sbjct: 348 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 407
Query: 1075 GESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRT 1134
G SGSGKSTV++L+ R YDP SG + LD ++ + WLR ++G VSQEP+LF+ +I
Sbjct: 408 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 467
Query: 1135 NIAYGKQ--GGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIAR 1192
NIAYG +NA FI P G+ T VGE+GV LSGGQKQRIAIAR
Sbjct: 468 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 527
Query: 1193 AVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKN 1252
A+LKNPKILLLDEATSALDAE+E +VQ+AL+R+M RT +V+AH L+TIKNA+++AV+
Sbjct: 528 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQ 587
Query: 1253 GVIAEQGSHDALMKITDGAYASLV 1276
G I E G H+ L+ +G Y L+
Sbjct: 588 GKITEYGKHEELLSKPNGIYRKLM 611
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 295 bits (756), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 288/515 (55%), Gaps = 10/515 (1%)
Query: 103 LAAGTGIAAFLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDT 162
+ A T + +LQ + + R+R + + R +GFFD T G++I R+ D
Sbjct: 86 IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD-RTPHGDIISRVINDV 144
Query: 163 ILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKM 222
I +G + +F + T G ++ L+LV L+ +P V+ ++ K
Sbjct: 145 DNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKY 204
Query: 223 SSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQQGMVSGIGL 282
Q + ++E+ +SG+ + FT E++ +EK++ + + + + SG+ L
Sbjct: 205 FYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGV-L 263
Query: 283 GVLMLTVIGTYGLAVW--YGSKLIIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNAFAG 340
LM ++ G A+ +G L ++ GT+ I L + S N
Sbjct: 264 PPLM-NMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM 322
Query: 341 GQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHV 400
A+A ++FE + + + D D + L ++ GEIE ++V+F Y + V + H+
Sbjct: 323 ALASAERIFEILDLEEEKD--DPDAVELREVRGEIEFKNVWFSYDKKKPV--LKDITFHI 378
Query: 401 PSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEP 460
G ALVG +GSGK+T+++L+ RFYD D G++L+DGIDI+K++ +R IG+V Q+
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438
Query: 461 ILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQ 520
ILF+T+++EN+ YG ATD+EI+ A +L ++ FI LP+G +T+ ++G LS GQ+Q
Sbjct: 439 ILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498
Query: 521 RIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADL 580
+AI RA L NPKIL+LDEATS +D ++E+ +Q A+ K+M +T++++AHRL TI+NADL
Sbjct: 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADL 558
Query: 581 IAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
I V+ G+IVE G HDELI+ G Y +L Q G
Sbjct: 559 IIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592
Score = 254 bits (650), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 187/582 (32%), Positives = 295/582 (50%), Gaps = 28/582 (4%)
Query: 703 SMRRL-AYLNKPEFPVLLIGSIA--AGIHGVIFPIFGLLLSSSIRMFFEPEDKLRKDSRF 759
++RRL YL F ++++ + I GV+ P L+ +I + F P RF
Sbjct: 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVVFVPR-------RF 73
Query: 760 WAL--IYLVLGIIN-LIAVPF--QNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPAN 814
L L+LG I L ++ F Q ++ R+R FEK+ + +FD
Sbjct: 74 DLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RT 131
Query: 815 SSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPL-M 873
G + +R+ D I +++G+S+ I T+A +I+ F N IL+ V L++ PL +
Sbjct: 132 PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV 191
Query: 874 LVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPL 933
L+ ++ K F + +++ + + D G + + F EEK M+ +++ E
Sbjct: 192 LITQIVSSQTRKYFYENQRVLGQLNGIIEEDISG-LTVIKLFTREEKEMEKFDRVNESLR 250
Query: 934 KNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGV 993
K G + I SG +V A G L T G + +
Sbjct: 251 KVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPL 310
Query: 994 SQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRP 1053
++ S A SA IFEILD + + D + + L V G IE + V F Y +
Sbjct: 311 NELSNQFNMIQMALASAERIFEILDLEEEKDDP--DAVELREVRGEIEFKNVWFSYDKKK 368
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
V +++ I G+ VALVG +GSGK+T++ L+ RFYD D G +L+D I++ K K S
Sbjct: 369 PV--LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
LR +G+V Q+ +LF+ T++ N+ YG G + H FI LP GYET +
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH-FIKHLPEGYETVL 485
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233
+ G LS GQ+Q +AI RA L NPKIL+LDEATS +D ++E+ +Q A+ ++M +T+++
Sbjct: 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSII 545
Query: 1234 VAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+AHRL TIKNAD+I V+++G I E G HD L++ G Y L
Sbjct: 546 IAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ-KRGFYYEL 586
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 197/571 (34%), Positives = 322/571 (56%), Gaps = 24/571 (4%)
Query: 53 MIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSDRSHVVHEVSKVAVKFLYLAAGTGIAA 111
+IV ++ I + + FM + L++ FG +DRS +V + V + + L GI +
Sbjct: 27 LIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVW-MPLVVIGLMIL---RGITS 82
Query: 112 FLQVSC--WMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAM 169
++ C W V+G+ T R L+ ++ + FFD ++T G ++ R++ D+ + +
Sbjct: 83 YVSSYCISW-VSGKVVMTMRRRLF-GHMMGMPVSFFDKQST-GTLLSRITYDSEQVASSS 139
Query: 170 GEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIA 229
+ ++ ++ G F++ W L+++L+ P + IA ++ +S Q
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNT 199
Query: 230 YSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRAAVQ-QGMVSGIGLGVLMLT 288
+ T EQ + G + V F G++ ++++ +V+ R +Q MVS + ++
Sbjct: 200 MGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD---KVSNRMRLQGMKMVSASSISDPIIQ 256
Query: 289 VIGTYGLA-VWYGSKL-IIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNA-FAGGQAAA 345
+I + LA V Y + + GT I V+ + M M ++ +NA F G AA
Sbjct: 257 LIASLALAFVLYAASFPSVMDSLTAGT-ITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315
Query: 346 YKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTT 405
+F + + + D +E+ G++E R+V F YP R +V +L +P+G T
Sbjct: 316 QTLFTILDSEQE---KDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKT 371
Query: 406 AALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFAT 465
ALVG+SGSGKST+ SL+ RFYD D GE+L+DG D+++ L +R ++ LVSQ LF
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND 431
Query: 466 SLRENIAYGK-ENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAI 524
++ NIAY + E + ++I A +A A FI+K+ GLDT+ GE+G LSGGQ+QRIAI
Sbjct: 432 TVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI 491
Query: 525 ARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVV 584
ARA+L++ IL+LDEATSALD ESER +Q AL ++ +RT++V+AHRL+TI AD I VV
Sbjct: 492 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVV 551
Query: 585 HQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
G IVE+GTH++L+ + G Y QL ++Q G
Sbjct: 552 EDGVIVERGTHNDLL-EHRGVYAQLHKMQFG 581
Score = 279 bits (714), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 181/524 (34%), Positives = 289/524 (55%), Gaps = 27/524 (5%)
Query: 762 LIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSVGA 821
L+ + L I+ I +Y GK++ +R F ++ +S+FD S+G++ +
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 822 RLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYTQT 881
R++ D+ + S +L VV+ A+I I+ F +W L+ +++ ++P++ + +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 882 KFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRRGI 941
K + S + + + + A + + V F +E ++K G++ +
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMK--M 244
Query: 942 LSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAP 1001
+S + + L + A F + + A+F V A TI+ + S + M P
Sbjct: 245 VSASSISDPIIQLIASLALAFVLYA-------ASFPSVMDSLTAGTITVVFSSMIALMRP 297
Query: 1002 DTT---------KAKDSAASIFEILDSKPKIDSSKDEG-MTLSSVGGAIELRCVSFKYPT 1051
+ + + ++F ILDS+ + KDEG + G +E R V+F YP
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFTILDSEQE----KDEGKRVIERATGDVEFRNVTFTYPG 353
Query: 1052 RPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKL 1111
R DV RN+ L IP+GKTVALVG SGSGKST+ +LI RFYD D G +L+D +L ++ L
Sbjct: 354 R-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTL 412
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
+ LR Q+ LVSQ LFN+T+ NIAY + + A +FI+ + +G +T
Sbjct: 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTT 1231
+GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESER +Q AL+ + NRT+
Sbjct: 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 1232 VVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+V+AHRL+TI+ AD I VV++GVI E+G+H+ L++ G YA L
Sbjct: 533 LVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLE-HRGVYAQL 575
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 203/578 (35%), Positives = 320/578 (55%), Gaps = 38/578 (6%)
Query: 53 MIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSDRSHVVHEVSKVAVKFLYLAAGTGIAA 111
+IV I+ I + + FM + L++ FG +DRS V+ + V + + L GI +
Sbjct: 27 LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS-VLLWMPLVVIGLMIL---RGITS 82
Query: 112 FLQVSC--WMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAM 169
++ C W V+G+ T R L+ ++ + FFD ++T G ++ R++ D+ ++
Sbjct: 83 YISSYCISW-VSGKVVMTMRRRLF-GHMMGMPVAFFDKQST-GTLLSRITYDS---EQVA 136
Query: 170 GEKVGKFIQLM---STFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRG 226
G I ++ ++ G F++ W L+++L+ P + IA ++ +S
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 227 QIAYSEAGTVVEQTVSGIRTVSSFTG---EKQAIEKYNNKLQVAYRAAVQQGM--VSGIG 281
Q + T EQ + G + V F G E + +K +NK+++ QGM VS
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL-------QGMKMVSASS 249
Query: 282 LGVLMLTVIGTYGLA-VWYGSKL-IIEKGYNGGTVINVIMAIMTGGMSLGQTSPCLNA-F 338
+ ++ +I + LA V Y + + GT I V+ + M M ++ +NA F
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGT-ITVVFSSMIALMRPLKSLTNVNAQF 308
Query: 339 AGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSL 398
G AA +F + + + D +++ G++E R+V F YP R EV +L
Sbjct: 309 QRGMAACQTLFAILDSEQE---KDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINL 364
Query: 399 HVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQ 458
+P+G T ALVG+SGSGKST+ SL+ RFYD D G +L+DG D+++ L +R ++ LVSQ
Sbjct: 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 459 EPILFATSLRENIAYGK-ENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGG 517
LF ++ NIAY + E + ++I A +A A FI+K+ GLDT+ GE+G LSGG
Sbjct: 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 518 QKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRN 577
Q+QRIAIARA+L++ IL+LDEATSALD ESER +Q AL ++ +RT++V+AHRL+TI
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 578 ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
AD I VV G IVE+GTH EL+ G Y QL ++Q G
Sbjct: 545 ADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQFG 581
Score = 278 bits (710), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/528 (34%), Positives = 289/528 (54%), Gaps = 28/528 (5%)
Query: 759 FW-ALIYLVLGIINLIAVPFQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSG 817
W L+ + L I+ I +Y GK++ +R F ++ +++FD S+G
Sbjct: 65 LWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTG 122
Query: 818 SVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQG 877
++ +R++ D+ + S +L VV+ A+I I+ F +W L+ +++ ++P++ +
Sbjct: 123 TLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAI 182
Query: 878 YTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGV 937
+K + S + + + + A + + V F +E ++K G+
Sbjct: 183 RVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM 242
Query: 938 RRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGVSQTS 997
+ ++S + + L + A F + + A+F V A TI+ + S +
Sbjct: 243 K--MVSASSISDPIIQLIASLALAFVLYA-------ASFPSVMDSLTAGTITVVFSSMIA 293
Query: 998 AMAPDTT---------KAKDSAASIFEILDSKPKIDSSKDEG-MTLSSVGGAIELRCVSF 1047
M P + + + ++F ILDS+ + KDEG + G +E R V+F
Sbjct: 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE----KDEGKRVIDRATGDLEFRNVTF 349
Query: 1048 KYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP 1107
YP R +V RN+ L IP+GKTVALVG SGSGKST+ +LI RFYD D GH+L+D +L
Sbjct: 350 TYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR 408
Query: 1108 KFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPH 1167
++ L+ LR Q+ LVSQ LFN+T+ NIAY + + A +FI+ + +
Sbjct: 409 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 468
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV 1227
G +T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESER +Q AL+ +
Sbjct: 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 1228 NRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
NRT++V+AHRL+TI+ AD I VV++G+I E+G+H L+ G YA L
Sbjct: 529 NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQL 575
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 270 bits (689), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 183/573 (31%), Positives = 306/573 (53%), Gaps = 28/573 (4%)
Query: 53 MIVGTISAIGSGLAHPFMTLIFGHLINS-FGSSDRSHVVHEVSKVAVKFLYLAAGTGIAA 111
++V TI+ + + A +M + L++ FG+++ S+ + + + + +++ G++
Sbjct: 27 LVVSTIALVINAAADTYMISLLKPLLDEGFGNAE-SNFLRILPFMILGLMFV---RGLSG 82
Query: 112 FLQVSCWMVTGERQATRIRGLYLKTILRQDIGFFDTETTTGEVIGRMSGDTILIQEAMGE 171
F C ++R + + FFD E+T G ++ R++ D+ + A
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGG-LLSRITYDSEQVAGATSR 141
Query: 172 KVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYS 231
+ ++ ++ G + W L+LVL+ P + A ++ K+S Q A
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMG 201
Query: 232 EAGTVVEQTVSGIRTVSSFTG---EKQAIEKYNNKLQVAYRAAVQQGM--VSGIGLGVLM 286
+ EQ + G + V S+ G E++ +K +N ++ QQ M VS + +
Sbjct: 202 HVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR-------QQTMKLVSAQSIADPV 254
Query: 287 LTVIGTYGL--AVWYGSKLIIEKGYNGGTVINVIMAIMTGGMS-LGQTSPCLNAFAGGQA 343
+ +I + L ++ S I GT V+ + M G M L + + F G A
Sbjct: 255 IQMIASLALFAVLFLASVDSIRAELTPGT-FTVVFSAMFGLMRPLKALTSVTSEFQRGMA 313
Query: 344 AAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSG 403
A +F + + + D E++ GE++++DV F Y + E + S +P G
Sbjct: 314 ACQTLFGLMDLETE---RDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQG 369
Query: 404 TTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILF 463
T ALVG+SGSGKST+ +L RFYD D+G + +DG D++ +L +R LVSQ LF
Sbjct: 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 464 ATSLRENIAYGKENA-TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522
++ NIAY E T ++I A A+A +FI+ +P+GLDT+ GE+GT LSGGQ+QR+
Sbjct: 430 NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
Query: 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIA 582
AIARA+L++ +L+LDEATSALD ESER +Q AL ++ ++T +V+AHRL+TI AD I
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549
Query: 583 VVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEG 615
VV +G+I+E+G H +L+ +G Y QL R+Q G
Sbjct: 550 VVDEGEIIERGRHADLLAQ-DGAYAQLHRIQFG 581
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 169/526 (32%), Positives = 277/526 (52%), Gaps = 29/526 (5%)
Query: 762 LIYLVLGIINLIAVP--FQNYFFGVAGGKLIRRIRSLTFEKVVHQEISWFDDPANSSGSV 819
L +++LG++ + + +Y G ++ ++R F +H + +FD S+G +
Sbjct: 67 LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGL 124
Query: 820 GARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLMLVQGYT 879
+R++ D+ + +L +V+ A+I L + F +W L+ V++ V+P++
Sbjct: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 880 QTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPLKNGVRR 939
+K + S + + + A + + V S+ +E E+K + N +R+
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQE-----VERKRFDKVSNSMRQ 239
Query: 940 ---GILSGAGFGFSFLVLYCTNA-----FCFYIGSVLVEHGKATFGQVFKVFFALT--IS 989
++S + + + A F + S+ E TF VF F L +
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLK 299
Query: 990 ALGVSQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKY 1049
AL +++ + + + ++F ++D + + D+ K E V G ++++ V+F Y
Sbjct: 300 AL-----TSVTSEFQRGMAACQTLFGLMDLETERDNGKYEA---ERVNGEVDVKDVTFTY 351
Query: 1050 PTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKF 1109
+ + ++ SIP GKTVALVG SGSGKST+ L RFYD DSG + LD ++ +
Sbjct: 352 QGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY 410
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGY 1169
KL+ LR+ LVSQ LFN+TI NIAY +G ++A FI +P G
Sbjct: 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL 470
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
+T +GE G LSGGQ+QR+AIARA+L++ +L+LDEATSALD ESER +Q AL+ + N+
Sbjct: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
T +V+AHRL+TI+ AD I VV G I E+G H L+ DGAYA L
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA-QDGAYAQL 575
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 239 bits (609), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 170/483 (35%), Positives = 249/483 (51%), Gaps = 29/483 (6%)
Query: 145 FDTETTTGEVIGRMSGDTILIQEAMGEKVGKFIQ--LMSTFFG--GFVVALARGWFL--- 197
F G+VI R+ D E+ FI LM+ + ++AL+ +FL
Sbjct: 111 FYANNQVGQVISRVINDV--------EQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162
Query: 198 -ALVLLACLPAIVIAGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQA 256
L L P ++ + K++ A +E + + V GI V SF E
Sbjct: 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNE 222
Query: 257 IEKYNNKLQVAYRAAVQQGMVSGIGLGVL-MLTVIGTYGLAVWYGSKLIIEKGYNGGTVI 315
+ ++ K A++ + + +T IG + + G+ L I GT+
Sbjct: 223 AKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI-IVIGVGAYLAISGSITVGTLA 281
Query: 316 NVIMAIMTGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDT-SGITLEKIE-- 372
+ + L + A+ ++F+ I + YD +G+ + IE
Sbjct: 282 AFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID-----EDYDIKNGVGAQPIEIK 336
Query: 373 -GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
G I++ V F+Y E I +L + G T A VG SG GKST+I+L+ RFYD +
Sbjct: 337 QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 432 GEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELAN 491
G++LIDG +IK +R +IGLV Q+ ILF+ +++ENI G+ ATD+E+ A ++AN
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
A FI LP+G DT GE G +LSGGQKQR++IAR L NP IL+LDEATSALD ESE I
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 552 VQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
+Q+AL + RTT++VAHRL+TI +AD I V+ G IVE GTH ELI +G Y L
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEHLYS 574
Query: 612 LQE 614
+Q
Sbjct: 575 IQN 577
Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 237/466 (50%), Gaps = 4/466 (0%)
Query: 814 NSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGLIIAFTANWILAFVILAVSPLM 873
N G V +R+ D + + L + + TI L I F + L L + P
Sbjct: 115 NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFY 174
Query: 874 LVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTVASFCSEEKVMDLYEKKCEGPL 933
++ Y ++ + + E ++ V I V SF E+ ++KK L
Sbjct: 175 ILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFL 234
Query: 934 KNGVRRGILSGAGFGFSFLVLYCTNAFCFYIGSVLVEHGKATFGQVFKVFFALTISALGV 993
++ + F V +G+ L G T G + L + +
Sbjct: 235 TRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPL 294
Query: 994 SQTSAMAPDTTKAKDSAASIFEILDSKPKIDSSKDEGMTLSSVGGAIELRCVSFKYPTRP 1053
+ A T++ S +F+++D I + + G I++ VSF+Y
Sbjct: 295 RRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDN- 352
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
+ I +++ LSI G+TVA VG SG GKST+I LI RFYD SG +L+D + F
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 412
Query: 1114 LRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
LR Q+GLV Q+ +LF++T++ NI G+ +NAH+FI LP GY+T V
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM-ANAHDFIMNLPQGYDTEV 471
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVV 1233
GERGV+LSGGQKQR++IAR L NP IL+LDEATSALD ESE ++Q+AL+ + +RTT++
Sbjct: 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 531
Query: 1234 VAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALH 1279
VAHRL+TI +AD I V++NG I E G+H L+ GAY L ++
Sbjct: 532 VAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEHLYSIQ 576
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 261/480 (54%), Gaps = 19/480 (3%)
Query: 151 TGEVIGRMSGDTILIQEAMGEKVGKFIQLMSTFFGGFVVALARGWFLALVLLACLPAIVI 210
T +I R++ D +Q + + ++ F GG V+A++ L+ VL+ +P IV+
Sbjct: 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL 178
Query: 211 AGGSMALIMSKMSSRGQIAYSEAGTVVEQTVSGIRTVSSFTGEKQAIEKYNNKLQVAYRA 270
+ + + + Q + E VV + + G+R V +F E+ Y N+
Sbjct: 179 LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREE-----YENENFRKANE 233
Query: 271 AVQQGMVSGIGLGVLMLTV---IGTYGL--AVWYGSKLIIEKGYNGGTVI---NVIMAIM 322
++++ ++S L V L + I G+ +W+G L+ G+++ N +M IM
Sbjct: 234 SLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM 293
Query: 323 TGGMSLGQTSPCLNAFAGGQAAAYKMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYF 382
M +G LN A+A ++ E + KP I+ D + + L +EG + +V F
Sbjct: 294 FSLMMIGN---ILNFIVRASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEF 349
Query: 383 RYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK 442
RY + + +G + V G+ A++G++GSGKST+++L+ R DP+ G V +D +D++
Sbjct: 350 RYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408
Query: 443 KLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKG 502
++LK +R I V QE +LF+ +++EN+ +G+E+ATD EI A ++A FI LP+G
Sbjct: 409 TVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
D+ G SGGQKQR++IARA++K PK+L+LD+ TS++D +E+ + D L +
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
Query: 563 RTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQEGSKEAEDA 622
TT ++ ++ T AD I V+H+GK+ GTH EL++ + PY ++ Q G+ DA
Sbjct: 529 CTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK-PYREIYESQFGNGVMNDA 587
Score = 199 bits (507), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 243/484 (50%), Gaps = 25/484 (5%)
Query: 793 IRSLTFEKVVHQEISWFDDPANSSGSVGARLSTDASTIRSLVGDSLALVVQNIATIAAGL 852
+R F KV+ IS + SS + RL+ D + +++LV L +VV+ G+
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 853 IIAFTANWILAFVILAVSPLMLVQGYTQTKFMKGFSADAKLMYEEASQVANDAVGSIRTV 912
++A + N L+ V++ + P +++ TK + +E ++V + + +R V
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 913 ASFCSEEKVMDLYEKKCEGPLKNGVRRGILSGAGFGFSFLVLYCTNAFCF---------- 962
+F EE YE + +RR I+S FS L+++ F F
Sbjct: 216 RAFRREE-----YENENFRKANESLRRSIISA----FS-LIVFALPLFIFIVNMGMIAVL 265
Query: 963 YIGSVLVEHGKATFGQVFKVFFALTISALGVSQTSAMAPDTTKAKDSAASIFEILDSKPK 1022
+ G VLV + + G + L + + +A SA + E+L+ KP
Sbjct: 266 WFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325
Query: 1023 IDSSKDEGMTLSSVGGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKS 1082
I+ + D + L +V G++ V F+Y D + + S+ G VA++GE+GSGKS
Sbjct: 326 IEEA-DNALALPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKS 383
Query: 1083 TVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQG 1142
T++ LI R DP+ G V +D +++ KL LR + V QE VLF+ TI+ N+ +G++
Sbjct: 384 TLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443
Query: 1143 GXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILL 1202
+ H+FI +LP GY++ V G SGGQKQR++IARA++K PK+L+
Sbjct: 444 ATDDEIVEAAKI-AQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI 502
Query: 1203 LDEATSALDAESERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHD 1262
LD+ TS++D +E+ + D L+R TT ++ ++ T AD I V+ G +A G+H
Sbjct: 503 LDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562
Query: 1263 ALMK 1266
L++
Sbjct: 563 ELLE 566
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 223 bits (567), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 165/244 (67%), Gaps = 2/244 (0%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IE DV F YP + + + +PSGTT ALVG +GSGKST+ L+ RFYD + G++
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDI 76
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
I G ++ K IR IG+V Q+ ILF +++ NI YGK +ATD+E+ A + A
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
FI+ LPK DT+ G G +LSGG++QRIAIAR +LK+PKI++ DEATS+LD+++E + Q
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 555 ALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQE 614
A+ + +RT +++AHRL+TI +A+ I ++++GKIVEKGTH +L+K G Y ++ +Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEMWNMQS 255
Query: 615 GSKE 618
G +
Sbjct: 256 GGND 259
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Query: 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G IE V+F YP + + + +++ IPSG T ALVG +GSGKST+ L+ RFYD +
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXS 1156
G + + + K+ + +R +G+V Q+ +LFNETI+ NI YGK +
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS-A 132
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
++FI ALP ++T VG +G++LSGG++QRIAIAR +LK+PKI++ DEATS+LD+++E
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
+ Q A+E + NRT +++AHRL+TI +A+ I ++ G I E+G+H L+K+ +G YA +
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEM 250
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 219 bits (558), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 1 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 153/241 (63%), Gaps = 4/241 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 118
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1279 H 1279
Sbjct: 239 Q 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 219 bits (558), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 7 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 153/241 (63%), Gaps = 4/241 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 124
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1279 H 1279
Sbjct: 245 Q 245
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 3 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 153/240 (63%), Gaps = 4/240 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 120
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 7 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 153/241 (63%), Gaps = 4/241 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 124
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1279 H 1279
Sbjct: 245 Q 245
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG++GSGKST+ L++RFY P+ G+
Sbjct: 3 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++AHRL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 153/240 (63%), Gaps = 4/240 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG +GSGKST+ LI+RFY P++G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 120
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++AHRL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 1 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++A RL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 4/241 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 118
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++A RL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1279 H 1279
Sbjct: 239 Q 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
+I R++ FRY V I +L + G +VG+SGSGKST+ L++RFY P+ G+
Sbjct: 7 DITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 434 VLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAA 493
VLIDG D+ W+R ++G+V Q+ +L S+ +NI+ + +++ A +LA A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 494 KFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQ 553
FI +L +G +T+ GE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 554 DALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVRLQ 613
+ KI RT +++A RL+T++NAD I V+ +GKIVE+G H EL+ +PE Y+ L +LQ
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 4/241 (1%)
Query: 1040 IELRCVSFKYPTRPDVQ-IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I R + F+Y +PD I N+ LSI G+ + +VG SGSGKST+ LI+RFY P++G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
VL+D +L +WLR+Q+G+V Q+ VL N +I NI+ G + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 124
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV 1218
H+FIS L GY T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1219 QDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVAL 1278
+ ++ RT +++A RL+T+KNAD I V++ G I EQG H L+ + Y+ L L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1279 H 1279
Sbjct: 245 Q 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/276 (43%), Positives = 170/276 (61%), Gaps = 5/276 (1%)
Query: 347 KMFETIKRKPKIDPYDTSGITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTA 406
MF+ +K + ++ +G L +G IE +V+F Y E S V G T
Sbjct: 27 NMFDLLKEETEVKDLPGAG-PLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTL 83
Query: 407 ALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATS 466
ALVG SG+GKST++ L+ RFYD +G + IDG DI ++ +R IG+V Q+ +LF +
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 467 LRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIAR 526
+ +NI YG+ A + E+ A + A I P+G T GE G +LSGG+KQR+AIAR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 527 AILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQ 586
ILK P I+LLDEATSALD +ER +Q +L K+ +RTT+VVAHRL+T+ NAD I V+
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 587 GKIVEKGTHDELIKDPEGPYTQLVRLQEGSKE-AED 621
G IVE+G H+ L+ G Y + +LQ+G +E +ED
Sbjct: 264 GCIVERGRHEALLSRG-GVYADMWQLQQGQEETSED 298
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G IE V F Y + +++ ++ G+T+ALVG SG+GKST++ L+ RFYD SG
Sbjct: 52 GRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
+ +D ++ + + LR +G+V Q+ VLFN+TI NI YG+ +
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQA-AG 168
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
H+ I A P GY T VGERG++LSGG+KQR+AIAR +LK P I+LLDEATSALD +ER
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 1218 VQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
+Q +L +V NRTT+VVAHRL+T+ NAD I V+K+G I E+G H+AL+ G YA +
Sbjct: 229 IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS-RGGVYADMWQ 287
Query: 1278 LH 1279
L
Sbjct: 288 LQ 289
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 206 bits (523), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 148/223 (66%), Gaps = 3/223 (1%)
Query: 378 RDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLID 437
R V F Y QI S + A G SG GKST+ SL+ERFY P AGE+ ID
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 438 GIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKE-NATDQEIRTAIELANAAKFI 496
G I + L+ R +IG VSQ+ + A ++REN+ YG E + TD+++ ++LA A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 497 DKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL 556
+ +P L+T GE G ++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ESE +VQ AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 557 VKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELI 599
+M RTT+V+AHRL+TI +AD I + +G+I G H+EL+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 143/239 (59%), Gaps = 3/239 (1%)
Query: 1043 RCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD 1102
R V F Y QI R++ +A G SG GKST+ +L+ERFY P +G + +D
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1103 NIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFI 1162
+ L R Q+G VSQ+ + TIR N+ YG +G + A +F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1163 SALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDAL 1222
+P T VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ESE +VQ AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1223 ERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVS 1281
+ +M RTT+V+AHRL+TI +AD I ++ G I G H+ L+ T YA V+ ++
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQLT 240
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 147/241 (60%), Gaps = 3/241 (1%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G ++ + VSF YP P+VQ+ + L ++ GK ALVG +GSGKSTV AL++ Y P G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
VLLD L ++ +L Q+ V QEP+LF + R NIAYG S
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
AH+FIS P GY+T VGE G QLSGGQ+Q +A+ARA+++ P++L+LD+ATSALDA ++
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 1218 VQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
VQ L +RT +++ H+L+ + A I +K G + EQG+H LM+ G Y S+
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCYRSM 253
Query: 1276 V 1276
V
Sbjct: 254 V 254
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
Query: 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP 429
++G ++ +DV F YP P VQ+ G + + G ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 430 DAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIEL 489
G+VL+DG + + ++ ++ V QEP+LF S RENIAYG E TA+ +
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 ANAAK-FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ A FI P+G DT GE G QLSGGQ+Q +A+ARA+++ P++L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 549 ERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
+ VQ L + SRT +++ H+L+ A I + +G + E+GTH +L++
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 152/243 (62%), Gaps = 7/243 (2%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G ++ + VSF YP RPDV + + L ++ G+ ALVG +GSGKSTV AL++ Y P G
Sbjct: 13 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 72
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
+LLD LP+++ +L +Q+ V QEP +F +++ NIAYG S
Sbjct: 73 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG 132
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAES--- 1214
AH+FIS LP GY+T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 1215 -ERVVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYA 1273
E+++ ++ ER +R+ +++ L+ ++ AD I ++ G I E G+H LM+ G Y
Sbjct: 193 VEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCYW 249
Query: 1274 SLV 1276
++V
Sbjct: 250 AMV 252
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 155/249 (62%), Gaps = 4/249 (1%)
Query: 366 ITLEKIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVER 425
+T +EG ++ +DV F YP RP+V + G + + G ALVG +GSGKSTV +L++
Sbjct: 6 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 65
Query: 426 FYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYG-KENATDQEIR 484
Y P G++L+DG + + + +++ ++ V QEP +F SL+ENIAYG + T +EI
Sbjct: 66 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 125
Query: 485 TAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSAL 544
A + A FI LP+G DT E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSAL
Sbjct: 126 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 185
Query: 545 DAESERIVQDALVKIMT--SRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
DA S+ V+ L + SR+ +++ L+ + AD I + G I E GTH +L++
Sbjct: 186 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK- 244
Query: 603 EGPYTQLVR 611
+G Y +V+
Sbjct: 245 KGCYWAMVQ 253
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 3/241 (1%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G ++ + VSF YP P+VQ+ + L ++ GK ALVG +GSGKSTV AL++ Y P G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
VLLD L ++ +L Q+ V QEP+LF + R NIAYG S
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
AH+FIS P GY+T VGE G QLSGGQ+Q +A+ARA+++ P++L+LD ATSALDA ++
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1218 VQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
VQ L +RT +++ +L+ + A I +K G + EQG+H LM+ G Y S+
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCYRSM 253
Query: 1276 V 1276
V
Sbjct: 254 V 254
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 143/234 (61%), Gaps = 3/234 (1%)
Query: 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP 429
++G ++ +DV F YP P VQ+ G + + G ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 430 DAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIEL 489
G+VL+DG + + ++ ++ V QEP+LF S RENIAYG E TA+ +
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 ANAAK-FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ A FI P+G DT GE G QLSGGQ+Q +A+ARA+++ P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 549 ERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
+ VQ L + SRT +++ +L+ A I + +G + E+GTH +L++
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 1038 GAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG 1097
G ++ + VSF YP P+VQ+ + L ++ GK ALVG +GSGKSTV AL++ Y P G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 1098 HVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
VLLD L ++ +L Q+ V QEP+LF + R NIAYG S
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
AH+FIS P GY+T VGE G QL+ GQ+Q +A+ARA+++ P++L+LD ATSALDA ++
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 1218 VQDALERV--MVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
VQ L +RT +++ +L+ + A I +K G + EQG+H LM+ G Y S+
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCYRSM 253
Query: 1276 V 1276
V
Sbjct: 254 V 254
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 142/234 (60%), Gaps = 3/234 (1%)
Query: 370 KIEGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDP 429
++G ++ +DV F YP P VQ+ G + + G ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 430 DAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIEL 489
G+VL+DG + + ++ ++ V QEP+LF S RENIAYG E TA+ +
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 ANAAK-FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
+ A FI P+G DT GE G QL+ GQ+Q +A+ARA+++ P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 549 ERIVQDALVKI--MTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK 600
+ VQ L + SRT +++ +L+ A I + +G + E+GTH +L++
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 20/230 (8%)
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---QL 446
+Q SLHVP+G ++G SG+GKST+I V P G VL+DG ++ L +L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 447 KWIREKIGLVSQE-PILFATSLRENIAYGKE--NATDQEI-RTAIELANAAKFIDKLPKG 502
R +IG++ Q +L + ++ N+A E N E+ R EL + DK
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK---- 133
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
+ + LSGGQKQR+AIARA+ NPK+LL DEATSALD + R + + L+K +
Sbjct: 134 ----HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-LLKDINR 188
Query: 563 R---TTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
R T +++ H + + R D +AV+ G+++E+ T E+ P+ P Q
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 28/228 (12%)
Query: 1047 FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106
F TR +Q N+ L +P+G+ ++G SG+GKST+I + P G VL+D EL
Sbjct: 11 FHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 69
Query: 1107 PKFKLSWL---RQQMGLVSQE-PVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFI 1162
S L R+Q+G++ Q +L + T+ N+A + +
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE----LDNTPKDEVKRRVTELL 125
Query: 1163 SALPHG-----YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
S + G Y +N LSGGQKQR+AIARA+ NPK+LL DEATSALD + R
Sbjct: 126 SLVGLGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1218 VQDALERVMVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+ + L+ +NR T +++ H + +K D +AV+ NG + EQ +
Sbjct: 179 ILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 20/230 (8%)
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---QL 446
+Q SLHVP+G ++G SG+GKST+I V P G VL+DG ++ L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 447 KWIREKIGLVSQE-PILFATSLRENIAYGKE--NATDQEI-RTAIELANAAKFIDKLPKG 502
R +IG++ Q +L + ++ N+A E N E+ R EL + DK
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK---- 156
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
+ + LSGGQKQR+AIARA+ NPK+LL D+ATSALD + R + + L+K +
Sbjct: 157 ----HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-LLKDINR 211
Query: 563 R---TTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
R T +++ H + + R D +AV+ G+++E+ T E+ P+ P Q
Sbjct: 212 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 28/228 (12%)
Query: 1047 FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL 1106
F TR +Q N+ L +P+G+ ++G SG+GKST+I + P G VL+D EL
Sbjct: 34 FHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92
Query: 1107 PKFKLSWL---RQQMGLVSQE-PVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFI 1162
S L R+Q+G++ Q +L + T+ N+A + +
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE----LDNTPKDEVKRRVTELL 148
Query: 1163 SALPHG-----YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERV 1217
S + G Y +N LSGGQKQR+AIARA+ NPK+LL D+ATSALD + R
Sbjct: 149 SLVGLGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 1218 VQDALERVMVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+ + L+ +NR T +++ H + +K D +AV+ NG + EQ +
Sbjct: 202 ILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 20/230 (8%)
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL---QL 446
+Q SLHVP+G ++G SG+GKST+I V P G VL+DG ++ L +L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 447 KWIREKIGLVSQE-PILFATSLRENIAYGKE--NATDQEI-RTAIELANAAKFIDKLPKG 502
R +IG + Q +L + ++ N+A E N E+ R EL + G
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV--------G 152
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS 562
L + + LSGGQKQR+AIARA+ NPK+LL D+ATSALD + R + + L+K +
Sbjct: 153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE-LLKDINR 211
Query: 563 R---TTVVVAHRLTTI-RNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
R T +++ H + R D +AV+ G+++E+ T E+ P+ P Q
Sbjct: 212 RLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 27/220 (12%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWL 1114
+Q N+ L +P+G+ ++G SG+GKST+I + P G VL+D EL S L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1115 ---RQQMGLVSQE-PVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHG-- 1168
R+Q+G + Q +L + T+ N+A + +S + G
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLE----LDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 1169 ---YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV 1225
Y +N LSGGQKQR+AIARA+ NPK+LL D+ATSALD + R + + L+
Sbjct: 157 HDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD- 208
Query: 1226 MVNR----TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+NR T +++ H +K D +AV+ NG + EQ +
Sbjct: 209 -INRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 20/246 (8%)
Query: 1039 AIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
+I +R +F + R D + SIP G VA+VG+ G GKS++++ + D GH
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1099 VLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNA 1158
V + + + V Q+ + N+++R NI +G Q
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACAL 106
Query: 1159 HNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE-SERV 1217
+ LP G T +GE+GV LSGGQKQR+++ARAV N I L D+ SA+DA + +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1218 VQDAL--ERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
++ + + ++ N+T ++V H ++ + D+I V+ G I+E GS+ L+ DGA+A
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEF 225
Query: 1276 VALHVS 1281
+ + S
Sbjct: 226 LRTYAS 231
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
I +R+ F + AR + G + +P G A+VGQ G GKS+++S + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAK 494
I G Q WI+ SLRENI +G + + R+ I+
Sbjct: 63 AIKGSVAYVPQQAWIQND-------------SLRENILFGCQ-LEEPYYRSVIQACALLP 108
Query: 495 FIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQD 554
++ LP G T GE G LSGGQKQR+++ARA+ N I L D+ SA+DA + + +
Sbjct: 109 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 555 ALV---KIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQLVR 611
++ ++ ++T ++V H ++ + D+I V+ GKI E G++ EL+ +G + + +R
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 9/239 (3%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ DV+ + +++ G ++H+ G ++G SGSGKST + + D D GE+
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 435 LIDGIDIK--KLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELAN 491
+IDGI++K L +RE++G+V Q LF ++ NI A A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA--EAK 139
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
A + +DK+ GL A + LSGGQ QR+AIARA+ PKI+L DE TSALD E
Sbjct: 140 AMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197
Query: 552 VQDALVKIMTS-RTTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
V + ++ T VVV H + R D + + G I+E+G ++L P+ T+
Sbjct: 198 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTK 256
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--PKFKLS 1112
+++ + + + I G+ V ++G SGSGKST + + D D G +++D I L L+
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 1113 WLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
+R+++G+V Q LF + T+ NI + A + + G +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPM---KVRKWPREKAEAKAMELLDKV--GLKD 151
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR-- 1229
LSGGQ QR+AIARA+ PKI+L DE TSALD E V +++ + N
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ-LANEGM 210
Query: 1230 TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
T VVV H + + D + + G I E+G + L
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 9/224 (4%)
Query: 390 VQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK--KLQLK 447
+++ G ++H+ G ++G SGSGKST + + D D GE++IDGI++K L
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 448 WIREKIGLVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTM 506
+RE++G+V Q LF ++ NI A A A + +DK+ GL
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA--EAKAMELLDKV--GLKDK 131
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-RTT 565
A + LSGGQ QR+AIARA+ PKI+L DE TSALD E V + ++ T
Sbjct: 132 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 191
Query: 566 VVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
VVV H + R D + + G I+E+G ++L P+ T+
Sbjct: 192 VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTK 235
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL--PKFKLS 1112
+++ + + + I G+ V ++G SGSGKST + + D D G +++D I L L+
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 1113 WLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
+R+++G+V Q LF + T+ NI + A + + G +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPM---KVRKWPREKAEAKAMELLDKV--GLKD 130
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR-- 1229
LSGGQ QR+AIARA+ PKI+L DE TSALD E V +++ + N
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ-LANEGM 189
Query: 1230 TTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
T VVV H + + D + + G I E+G + L
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 19/224 (8%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
+V+ G S V G AL+G SG GK+T + ++ Y P +GE+ D + + + K+
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 449 IREKIGLVSQEPILFA-TSLRENIAY---GKENATDQEIRTAIELANAAKFIDKLPKGLD 504
++G+V Q L+ ++ ENIA+ + + D+ + +E+A K + +D
Sbjct: 75 --REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR--KLL------ID 124
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR- 563
+ TQLSGGQ+QR+A+ARA++K PK+LL DE S LDA + R++ A +K +
Sbjct: 125 NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA-NLRMIMRAEIKHLQQEL 183
Query: 564 --TTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEG 604
T+V V H + + A IAV +QGK+V+ GT DE+ P+
Sbjct: 184 GITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 20/212 (9%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL----PKFKLSWLRQ 1116
+ + G+ VAL+G SG GK+T + ++ Y P SG + D++ + PK++
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR------ 75
Query: 1117 QMGLVSQEPVLFNE-TIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGE 1175
++G+V Q L+ T+ NIA+ + A + + +
Sbjct: 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL------IDNLLDR 129
Query: 1176 RGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVV 1233
+ QLSGGQ+QR+A+ARA++K PK+LL DE S LDA +++ ++ + + T+V
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189
Query: 1234 VAH-RLTTIKNADIIAVVKNGVIAEQGSHDAL 1264
V H + + A IAV G + + G+ D +
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 23/217 (10%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
+L + G AL+G SGSGKST++ + Y P +G++ D D+ +L K +GLV
Sbjct: 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLV 80
Query: 457 SQEPILFA-TSLRENIAYGKE------NATDQEIRTAIELANAAKFIDKLPKGLDTMAGE 509
Q L+ ++ +NIA+ E D+++R ++ + K +++ P
Sbjct: 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP--------- 131
Query: 510 HGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVV 567
QLSGGQ+QR+AIARA++K P++LLLDE S LDA V+ L ++ TTV
Sbjct: 132 --WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 568 VAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDPE 603
V H + + AD IAV+ +G+I++ GT DE+ P+
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 18/214 (8%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117
N+ L I G+ +AL+G SGSGKST++ I Y P SG + D ++ + L +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKDRN 76
Query: 1118 MGLVSQEPVLF-NETIRTNIAYG---KQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
+GLV Q L+ + T+ NIA+ ++ H I L + Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--IDKLLNRYPW-- 132
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTT 1231
QLSGGQ+QR+AIARA++K P++LLLDE S LDA V+ L+R+ + TT
Sbjct: 133 -----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 1232 VVVAH-RLTTIKNADIIAVVKNGVIAEQGSHDAL 1264
V V H + + AD IAV++ G I + G+ D +
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 115/212 (54%), Gaps = 14/212 (6%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
SL V SG ++G +G+GK+ + L+ F+ PD+G +L+DG D+ L + + I
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75
Query: 455 LVSQEPILFA-TSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQ 513
V Q LF ++++N+ +G ++ + ++ A K ++ + +
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK--------IEHLLDRNPLT 127
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TTVVVAHR 571
LSGG++QR+A+ARA++ NPKILLLDE SALD ++ ++ L + T + + H
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 572 LTTIR-NADLIAVVHQGKIVEKGTHDELIKDP 602
T R AD IAVV GK+++ G +E+ + P
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 16/222 (7%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
NL L + SG+ ++G +G+GK+ + LI F+ PDSG +LLD ++ LS + +
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHDIA 75
Query: 1120 LVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERGV 1178
V Q LF + ++ N+ +G + A + + H + N +
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMR---MKKIKDPKRVLDTARDL--KIEHLLDRN----PL 126
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-VNRTTVV-VAH 1236
LSGG++QR+A+ARA++ NPKILLLDE SALD ++ ++ L + N+ TV+ + H
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
Query: 1237 RLTTIK-NADIIAVVKNGVIAEQGSHDALM-KITDGAYASLV 1276
T + AD IAVV +G + + G + + K +G AS V
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 3/230 (1%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
G++ ++D+ +Y I S + G L+G++GSGKST++S R + + G
Sbjct: 18 GQMTVKDLTAKYTEGGNA-ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 75
Query: 433 EVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANA 492
E+ IDG+ + L+ R+ G++ Q+ +F+ + R+N+ + +DQEI +
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH-SDQEIWKVADEVGL 134
Query: 493 AKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIV 552
I++ P LD + + G LS G KQ + +AR++L KILLLDE ++ LD + +I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 553 QDALVKIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+ L + T ++ R+ + D V+ + K+ + + EL P
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 7/231 (3%)
Query: 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
GG + ++ ++ KY T I N+ SI G+ V L+G +GSGKST+++ R + +
Sbjct: 17 GGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXS 1156
G + +D + L R+ G++ Q+ +F+ T R N+
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL--DPNAAHSDQEIWKVADEV 132
Query: 1157 NAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER 1216
+ I P + + + G LS G KQ + +AR+VL KILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1217 VVQDALERVMVNRTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMKI 1267
+++ L++ + T ++ R+ + D V++ + + +D+++++
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ---YDSILEL 240
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 23/218 (10%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIG 454
G S + G L+G SGSGK+T++ L+ P G+V I G + L + + +G
Sbjct: 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVG 90
Query: 455 LVSQEPILFA-TSLRENIAYG------KENATDQEIRTAIELANAAKFIDKLPKGLDTMA 507
LV Q LF ++ +N+++G ++ D +R + + ++ P
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------ 144
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--TT 565
+LSGGQ+QR+A+ARA+ P++LL DE +A+D + R ++ + ++ T+
Sbjct: 145 -----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 566 VVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
V V H + + AD + V+H+G + + GT +E+ + P
Sbjct: 200 VFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 28/220 (12%)
Query: 1059 RNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN---IELPKFKLSWLR 1115
R + I G+ V L+G SGSGK+T++ LI P G V + +LP K
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK----- 86
Query: 1116 QQMGLVSQEPVLFNE-TIRTNIAYGKQGGXXXXXXXXXXXXS-----NAHNFISALPHGY 1169
+ +GLV Q LF T+ N+++G + ++ + PH
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH-- 144
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--V 1227
+LSGGQ+QR+A+ARA+ P++LL DE +A+D + R ++ + +V +
Sbjct: 145 ---------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195
Query: 1228 NRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
T+V V H + ++ AD + V+ G + + G+ + + +
Sbjct: 196 GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 94.4 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 29/233 (12%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I+L++V Y E+ I+A +L++ G ++ G SGSGKST ++++ P G
Sbjct: 2 IKLKNVTKTYKXGEEI-IYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEG 60
Query: 433 EVLIDGIDIKKLQ----LKWIREKIGLVSQE----PILFATSLRENI------AYGKENA 478
EV ID I L K R+KIG V Q+ P+L A EN+ Y +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL---ENVELPLIFKYRGAXS 117
Query: 479 TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538
++ + A+E A+ ++ A QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 118 GEERRKRALECLKXAELEERF-------ANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 539 EATSALDAESERIVQDALVKIMTS--RTTVVVAHRLTTIRNADLIAVVHQGKI 589
E T ALD+++ + L K+ +T VVV H + R + I + G++
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 36/240 (15%)
Query: 1040 IELRCVSFKYPTRPDV-QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L+ V+ Y ++ +N+ L+I G+ V++ G SGSGKST + +I P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1099 VLLDNI--------ELPKFKLSWLRQQMGLVSQE----PVLFN-ETIRTNIAYGKQGGXX 1145
V +DNI EL K + R ++G V Q+ P+L E + + + +G
Sbjct: 62 VYIDNIKTNDLDDDELTKIR----RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAX- 116
Query: 1146 XXXXXXXXXXSNAHNFISALPHGYETNVGERGV-----QLSGGQKQRIAIARAVLKNPKI 1200
S AL + ER QLSGGQ+QR+AIARA+ NP I
Sbjct: 117 ----------SGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 1201 LLLDEATSALDAESERVVQDALERVMVN--RTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
+L DE T ALD+++ + L+++ +T VVV H + + + I +K+G + +
Sbjct: 167 ILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 94.0 bits (232), Expect = 5e-19, Method: Composition-based stats.
Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 408 LVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFA-TS 466
L+G +G+GKS + L+ PD GEV ++G DI L + R IG V Q+ LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 467 LRENIAYGKENATDQEIRTAI----ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRI 522
+ NIAYG N E + E A +D+ P +LSGG++QR+
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRV 135
Query: 523 AIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV--VAHRLTTIRN-AD 579
A+ARA++ P++LLLDE SA+D +++ ++ + L + + V H L AD
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 580 LIAVVHQGKIVEKGTHDELIKDPEGPYTQLV 610
+AV+ G+IVEKG EL G + +
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 23/228 (10%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
D ++ R+ C+ L+G +G+GKS + LI PD G V L+ ++ L
Sbjct: 19 DFEMGRDYCV---------LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPP 67
Query: 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETN 1172
R+ +G V Q+ LF ++ NIAYG + + L
Sbjct: 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------- 120
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRT 1230
+ +LSGG++QR+A+ARA++ P++LLLDE SA+D +++ V+ + L V +
Sbjct: 121 -DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP 179
Query: 1231 TVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMKITDGAYASLVA 1277
+ V H L AD +AV+ NG I E+G L +G A ++
Sbjct: 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 33/235 (14%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
I+L++V Y E+ I+A +L++ G +++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEI-IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 433 EVLIDGIDIKKLQ----LKWIREKIGLVSQE----PILFATSLRENI------AYGKENA 478
EV ID I L K R+KIG V Q+ P+L A EN+ Y +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL---ENVELPLIFKYRGAMS 117
Query: 479 TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538
++ + A+E A+ ++ A QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 118 GEERRKRALECLKMAELEERF-------ANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 539 EATSALDAES-ERIVQDALVKIMTS---RTTVVVAHRLTTIRNADLIAVVHQGKI 589
+ T ALD+++ E+I+Q L+K + +T VVV H + R + I + G++
Sbjct: 171 QPTGALDSKTGEKIMQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 18/231 (7%)
Query: 1040 IELRCVSFKYPTRPDV-QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGH 1098
I+L+ V+ Y ++ +N+ L+I G+ V+++G SGSGKST++ +I P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1099 VLLDNI---ELPKFKLSWLRQ-QMGLVSQE----PVLFN-ETIRTNIAYGKQGGXXXXXX 1149
V +DNI +L +L+ +R+ ++G V Q+ P+L E + + + +G
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1150 XXXXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSA 1209
+ ++ N QLSGGQ+QR+AIARA+ NP I+L D+ T A
Sbjct: 122 RKRALECLKMAELEERFANHKPN------QLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 1210 LDAESERVVQDALERVMVN--RTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
LD+++ + L+++ +T VVV H + + + I +K+G + +
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI--KKLQLKWI 449
+ SL + G ++G SG GK+T++ + F PD+GE+ + G I K L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 450 REKIGLVSQEPILFAT-SLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
++G + QE +LF ++ NIAYG N RTA E ++ G+ +AG
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG---RTAQERQRIEAMLEL--TGISELAG 133
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS--RTTV 566
+ +LSGGQ+QR A+ARA+ +P+++LLDE SALD + R +++ ++ + + ++ V
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 567 VVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
V+H R ++ AD IAV+ QG+I++ + EL + P
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 16/221 (7%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLD--NIELPKFKL 1111
+ + ++ LS+ G+ + ++G SG GK+T++ + F PDSG + L I L
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 1112 SWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPH--G 1168
+++G + QE VLF T+ NIAYG G + I A+ G
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT--------AQERQRIEAMLELTG 127
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVV-QDALERVMV 1227
G +LSGGQ+QR A+ARA+ +P+++LLDE SALD + R + +D + +
Sbjct: 128 ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187
Query: 1228 N-RTTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
N ++ V V+H R ++ AD IAV+K G I + S L +
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 33/235 (14%)
Query: 375 IELRDVYFRYPARPEVQIFA--GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
++L++V Y E+ I+A +L++ G +++G SGSGKST+++++ P G
Sbjct: 2 VKLKNVTKTYKMGEEI-IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 433 EVLIDGIDIKKLQ----LKWIREKIGLVSQE----PILFATSLRENI------AYGKENA 478
EV ID I L K R+KIG V Q+ P+L A EN+ Y +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL---ENVELPLIFKYRGAMS 117
Query: 479 TDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLD 538
++ + A+E A+ ++ A QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 118 GEERRKRALECLKMAELEERF-------ANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 539 EATSALDAES-ERIVQDALVKIMTS---RTTVVVAHRLTTIRNADLIAVVHQGKI 589
+ T ALD+++ E+I+Q L+K + +T VVV H + R + I + G++
Sbjct: 171 QPTWALDSKTGEKIMQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 17/212 (8%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI---ELPKFKLSWL 1114
+N+ L+I G+ V+++G SGSGKST++ +I P G V +DNI +L +L+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1115 RQ-QMGLVSQE----PVLFN-ETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHG 1168
R+ ++G V Q+ P+L E + + + +G +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN 1228
++ N QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+++ + L+++
Sbjct: 141 HKPN------QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 1229 --RTTVVVAHRLTTIKNADIIAVVKNGVIAEQ 1258
+T VVV H + + + I +K+G + +
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 134/258 (51%), Gaps = 32/258 (12%)
Query: 372 EGEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDA 431
E ++ + D++ RY ++ G SL +G +++G SGSGKST + + P
Sbjct: 4 ENKLHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE 60
Query: 432 GEVLIDGIDIK-------------KLQLKWIREKIGLVSQEPILFA-TSLRENIAYGKEN 477
G ++++G +I K QL+ +R ++ +V Q L++ ++ EN+
Sbjct: 61 GAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 120
Query: 478 ATDQEIRTAIELANAAKFIDKLPKGLDTMA-GEHGTQLSGGQKQRIAIARAILKNPKILL 536
A E A K++ K+ G+D A G++ LSGGQ+QR++IARA+ P +LL
Sbjct: 121 VLGLSKHDARE--RALKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176
Query: 537 LDEATSALDAESERIVQDALVKIMTS-----RTTVVVAHRLTTIRN-ADLIAVVHQGKIV 590
DE TSALD E +V + L +IM +T VVV H + R+ + + +HQGKI
Sbjct: 177 FDEPTSALDPE---LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232
Query: 591 EKGTHDELIKDPEGPYTQ 608
E+G +++ +P+ P Q
Sbjct: 233 EEGDPEQVFGNPQSPRLQ 250
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD----AESERVVQDALERV 1225
E G+ V LSGGQ+QR++IARA+ P +LL DE TSALD E R++Q E
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE- 202
Query: 1226 MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGS 1260
+T VVV H + ++ + + + G I E+G
Sbjct: 203 --GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ +L++ G A+ G +GSGK++++ L+ + G + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
++ SQ + +++ENI +G + + ++ ++ + I K + +T+ GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD E++ + + K+M ++T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ +R AD I ++HQG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VSF + + +N+ L+I G+ +A+ G +GSGK++++ LI + G +
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISA 1164
++ SQ + TI+ NI +G I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITK 145
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQDALE 1223
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1224 RVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
++M N+T ++V ++ ++ AD I ++ G
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ +L++ G A+ G +GSGK++++ L+ + G + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
++ SQ + +++ENI +G + + ++ ++ + I K + +T+ GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD E++ + + K+M ++T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ +R AD I ++HQG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VSF + + +N+ L+I G+ +A+ G +GSGK++++ LI + G +
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISA 1164
++ SQ + TI+ NI +G I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITK 145
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQDALE 1223
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1224 RVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
++M N+T ++V ++ ++ AD I ++ G
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 118/216 (54%), Gaps = 18/216 (8%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK---KLQLKWIREKI 453
++++ +G ++G SG+GK+T + ++ P GE+ D + KL + KI
Sbjct: 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84
Query: 454 GLVSQEPILFAT-SLRENIAYGKENA--TDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
G+V Q L+ + ENIA+ N + +EIR +E AK +D + +
Sbjct: 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE--EVAKILD-----IHHVLNHF 137
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR---TTVV 567
+LSGGQ+QR+A+ARA++K+P +LLLDE S LDA R ALVK + SR T +V
Sbjct: 138 PRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLV 196
Query: 568 VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
V+H I AD + V+ +GK+V+ G ++L +P
Sbjct: 197 VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP---KFKLSWLRQ 1116
N+ ++I +G+ ++G SG+GK+T + +I P +G + D+ + K + +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1117 QMGLVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNA-----HNFISALPHGYE 1170
++G+V Q L+ N T NIA+ A H+ ++ P
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR--- 139
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA---ESER-VVQDALERVM 1226
+LSGGQ+QR+A+ARA++K+P +LLLDE S LDA +S R +V++ R+
Sbjct: 140 --------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 1227 VNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSS 1282
V T +VV+H I AD + V+ G + + G + L Y + V++ V+S
Sbjct: 192 V--TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------YDNPVSIQVAS 239
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
+I SQ + +++ENI +G + + R+ I+ + I K + + + GE G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++V
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ ++ AD I ++H+G GT EL
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 81
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGER 1176
++ SQ + TI+ NI +G IS +GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVA 1235
G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T ++V
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 1236 HRLTTIKNADIIAVVKNG 1253
++ +K AD I ++ G
Sbjct: 200 SKMEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
+I SQ + +++ENI +G + + R+ I+ + I K + + + GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ ++ AD I ++H+G GT EL
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 69
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGER 1176
++ SQ + TI+ NI +G IS +GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVA 1235
G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T ++V
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 1236 HRLTTIKNADIIAVVKNG 1253
++ +K AD I ++ G
Sbjct: 188 SKMEHLKKADKILILHEG 205
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
E + SL + G + G +GSGKST++ +V +P +G+VL DG K +
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE--- 77
Query: 449 IREKIGLVSQEP--ILFATSLRENIAYGKEN-ATDQE----IRTAIELA--NAAKFIDKL 499
IR IG+ Q P FA + + +A+ +N D++ ++ A+E + F D++
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 137
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
P LSGG+K+R+AIA I+ P IL+LDE LD E + + + K
Sbjct: 138 P-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 186
Query: 560 MT-SRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIK--DPEGPYTQLVRLQEG 615
T +T ++++H + T I + D + V+ +GK V GT E ++ DP ++++ ++
Sbjct: 187 KTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 246
Query: 616 SKEAEDALATDADKL 630
+ ED + D+L
Sbjct: 247 VLKGEDPFSMSDDEL 261
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 14/241 (5%)
Query: 1038 GAIELRCVS--FKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD 1095
G IE+ VS F T + + N+ L I G+ + + G +GSGKST++ ++ +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1096 SGHVLLDNIELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQGGXXXXXXXXXX 1153
SG VL D + K +R+ +G+ Q P F E + +A+ +
Sbjct: 63 SGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN--FYPDRDPVP 117
Query: 1154 XXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAE 1213
A F+ ++ V LSGG+K+R+AIA ++ P IL+LDE LD E
Sbjct: 118 LVKKAMEFVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 174
Query: 1214 SERVVQDALER-VMVNRTTVVVAHRL-TTIKNADIIAVVKNGVIAEQGSHDALMKITDGA 1271
+ + +E+ + +T ++++H + T I + D + V++ G G+ ++ D
Sbjct: 175 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPR 234
Query: 1272 Y 1272
+
Sbjct: 235 F 235
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
E + SL + G + G +GSGKST++ +V +P +G+VL DG K +
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE--- 75
Query: 449 IREKIGLVSQEP--ILFATSLRENIAYGKEN-ATDQE----IRTAIELA--NAAKFIDKL 499
IR IG+ Q P FA + + +A+ +N D++ ++ A+E + F D++
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 135
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
P LSGG+K+R+AIA I+ P IL+LDE LD E + + + K
Sbjct: 136 P-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184
Query: 560 MT-SRTTVVVAHRL-TTIRNADLIAVVHQGKIVEKGTHDELIK--DPEGPYTQLVRLQEG 615
T +T ++++H + T I + D + V+ +GK V GT E ++ DP ++++ ++
Sbjct: 185 KTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRL 244
Query: 616 SKEAEDALATDADKL 630
+ ED + D+L
Sbjct: 245 VLKGEDPFSMSDDEL 259
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 12/217 (5%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMG 1119
N+ L I G+ + + G +GSGKST++ ++ +P SG VL D + K +R+ +G
Sbjct: 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIRRNIG 81
Query: 1120 LVSQEP--VLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGERG 1177
+ Q P F E + +A+ + A F+ ++ V
Sbjct: 82 IAFQYPEDQFFAERVFDEVAFAVKN--FYPDRDPVPLVKKAMEFVGLDFDSFKDRVP--- 136
Query: 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER-VMVNRTTVVVAH 1236
LSGG+K+R+AIA ++ P IL+LDE LD E + + +E+ + +T ++++H
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
Query: 1237 RL-TTIKNADIIAVVKNGVIAEQGSHDALMKITDGAY 1272
+ T I + D + V++ G G+ ++ D +
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ +L++ G A+ G +GSGK++++ L+ + G + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
++ SQ + +++ENI G + + ++ ++ + I K + +T+ GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD E++ + + K+M ++T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ +R AD I ++HQG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VSF + + +N+ L+I G+ +A+ G +GSGK++++ LI + G +
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISA 1164
+ SW+ P E I ++Y + I+
Sbjct: 101 VSFCSQFSWIM---------PGTIKENIIRGVSYDE------YRYKSVVKACQLQQDITK 145
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQDALE 1223
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1224 RVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
++M N+T ++V ++ ++ AD I ++ G
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ +L++ G A+ G +GSGK++++ L+ + G + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
++ SQ + +++ENI G + + ++ ++ + I K + +T+ GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD E++ + + K+M ++T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ +R AD I ++HQG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VSF + + +N+ L+I G+ +A+ G +GSGK++++ LI + G +
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISA 1164
+ SW+ P E I + ++Y + I+
Sbjct: 101 VSFCSQFSWIM---------PGTIKENIISGVSYDE------YRYKSVVKACQLQQDITK 145
Query: 1165 LPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQDALE 1223
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E+V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1224 RVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
++M N+T ++V ++ ++ AD I ++ G
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIK---KLQLKWIREKI 453
++++ +G ++G SG+GK+T + ++ P GE+ D + KL + KI
Sbjct: 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84
Query: 454 GLVSQEPILFAT-SLRENIAYGKENA--TDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
G+V Q L+ + ENIA+ N + +EIR +E AK +D + +
Sbjct: 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE--EVAKILD-----IHHVLNHF 137
Query: 511 GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR---TTVV 567
+LSG Q+QR+A+ARA++K+P +LLLDE S LDA R ALVK + SR T +V
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLV 196
Query: 568 VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDP 602
V+H I AD + V+ +GK+V+ G ++L +P
Sbjct: 197 VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 1060 NLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELP---KFKLSWLRQ 1116
N+ ++I +G+ ++G SG+GK+T + +I P +G + D+ + K + +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1117 QMGLVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNA-----HNFISALPHGYE 1170
++G+V Q L+ N T NIA+ A H+ ++ P
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR--- 139
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA---ESER-VVQDALERVM 1226
+LSG Q+QR+A+ARA++K+P +LLLDE S LDA +S R +V++ R+
Sbjct: 140 --------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 1227 VNRTTVVVAHRLTTI-KNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSS 1282
V T +VV+H I AD + V+ G + + G + L Y + V++ V+S
Sbjct: 192 V--TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------YDNPVSIQVAS 239
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 114/220 (51%), Gaps = 16/220 (7%)
Query: 393 FAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDG--IDIKKLQLKWIR 450
G ++++ G A++G +G GKST+ P +G +L D ID + + +R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 451 EKIGLVSQEPI--LFATSLRENIAYGKENAT--DQEIRTAIELANAAKFIDKLPKGLDTM 506
E IG+V Q+P LF+ S+ +++++G N + EIR ++ NA K G++ +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD--NALKRT-----GIEHL 136
Query: 507 AGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR--T 564
+ LS GQK+R+AIA ++ PK+L+LDE T+ LD + LV++ T
Sbjct: 137 KDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 565 TVVVAHRLTTIR-NADLIAVVHQGKIVEKGTHDELIKDPE 603
++ H + + D + V+ +G+++ +G E+ + E
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
L+ Y + + ++I G+ A++G +G GKST+ P SG +L
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 1102 DN--IELPKFKLSWLRQQMGLVSQEP--VLFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
DN I+ + + LR+ +G+V Q+P LF+ ++ ++++G
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG----AVNMKLPEDEIRKR 123
Query: 1158 AHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD----AE 1213
N + G E + LS GQK+R+AIA ++ PK+L+LDE T+ LD +E
Sbjct: 124 VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181
Query: 1214 SERVVQDALERVMVNRTTVVVAHRLTTIK-NADIIAVVKNGVIAEQGS 1260
+++ + + + + T ++ H + + D + V+K G + QG+
Sbjct: 182 IMKLLVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 25/218 (11%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
+L + G L+G SG GK+T + ++ +P G + D+ L K I +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 88
Query: 456 VSQEPILFA-TSLRENIAYG------KENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
V Q ++ ++ ENIA+ ++ D+ +R A EL + +++ P
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------- 140
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR---TT 565
QLSGGQ+QR+A+ARAI+ P +LL+DE S LDA+ R+ A +K + + TT
Sbjct: 141 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL-RVAMRAEIKKLQQKLKVTT 196
Query: 566 VVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+ V H ++ + D IAV+++G++++ G+ E+ P
Sbjct: 197 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 234
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
L L+I G+ + L+G SG GK+T + +I +P G + + ++ L + + +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY--LPPKDRNISM 88
Query: 1121 VSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNF-ISALPHGYETNVGERGV 1178
V Q ++ + T+ NIA+ + A I L + Y
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 141
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAH 1236
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ ++ ++++ + TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1237 -RLTTIKNADIIAVVKNGVIAEQGS 1260
++ + D IAV+ G + + GS
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 25/218 (11%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
+L + G L+G SG GK+T + ++ +P G + D+ L K I +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87
Query: 456 VSQEPILFA-TSLRENIAYG------KENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
V Q ++ ++ ENIA+ ++ D+ +R A EL + +++ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------- 139
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSR---TT 565
QLSGGQ+QR+A+ARAI+ P +LL+DE S LDA+ R+ A +K + + TT
Sbjct: 140 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL-RVAMRAEIKKLQQKLKVTT 195
Query: 566 VVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+ V H ++ + D IAV+++G++++ G+ E+ P
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
L L+I G+ + L+G SG GK+T + +I +P G + + ++ L + + +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY--LPPKDRNISM 87
Query: 1121 VSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNF-ISALPHGYETNVGERGV 1178
V Q ++ + T+ NIA+ + A I L + Y
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNRTTVVVAH 1236
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ ++ ++++ + TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1237 -RLTTIKNADIIAVVKNGVIAEQGS 1260
++ + D IAV+ G + + GS
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 17/229 (7%)
Query: 395 GFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPD----AGEVLIDGIDI---KKLQLK 447
G SL + + A+VG+S SGKST+I + + P+ +G VL G D+ ++ +L+
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 448 WIREK-IGLVSQEPILFATSLRENIAYGKENATDQEIRTA----IELANAAKFIDKLPKG 502
IR K I LV Q + I + K+ +R + IE A+ + +L
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRL--N 143
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESE-RIVQDALVKIMT 561
+ + + QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ I+Q
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 562 SRTTVV-VAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ T++ V H + AD +AV++ G +VE + ++ K+P PYT+
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 111/250 (44%), Gaps = 37/250 (14%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPD----SGHVLLDNIELPKFKLSWLRQ 1116
+ L I A+VGES SGKST+I + + P+ SG VL +L + LR+
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 1117 ----QMGLVSQ------EPVL-----FNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNF 1161
++ LV Q P + F +T+ + G S
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH-------GVRWSHSELIEKASEKLRM 139
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE-RVVQD 1220
+ P E + +QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ ++Q
Sbjct: 140 VRLNP---EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 1221 ALERVMVNRTTVV-VAHRLTTIKN-ADIIAVVKNGVIAEQGS-----HDALMKITDGAYA 1273
E + + T++ V H + AD +AV+ G + E S + L T G
Sbjct: 197 LKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLIN 256
Query: 1274 SLVALHVSSS 1283
S++A++ S
Sbjct: 257 SIMAVNADMS 266
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
+I SQ + +++ENI G + + R+ I+ + I K + + + GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++V
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ ++ AD I ++H+G GT EL
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 99
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGER 1176
++ SQ + TI+ NI G IS +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVA 1235
G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T ++V
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 1236 HRLTTIKNADIIAVVKNG 1253
++ +K AD I ++ G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 22/211 (10%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENI---AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
+I SQ + +++ENI +Y + R+ I+ + I K + + + G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVV 567
E G LSGGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
V ++ ++ AD I ++H+G GT EL
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 23/201 (11%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 99
Query: 1117 QMGLVSQEPVLFNETIRTNI---AYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
++ SQ + TI+ NI +Y + IS +
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTV 1232
GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 1233 VVAHRLTTIKNADIIAVVKNG 1253
+V ++ +K AD I ++ G
Sbjct: 214 LVTSKMEHLKKADKILILHEG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 22/211 (10%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENI---AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
+I SQ + +++ENI +Y + R+ I+ + I K + + + G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVV 567
E G LSGGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
V ++ ++ AD I ++H+G GT EL
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 23/201 (11%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 99
Query: 1117 QMGLVSQEPVLFNETIRTNI---AYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
++ SQ + TI+ NI +Y + IS +
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTV 1232
GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 1233 VVAHRLTTIKNADIIAVVKNG 1253
+V ++ +K AD I ++ G
Sbjct: 214 LVTSKMEHLKKADKILILHEG 234
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 22/211 (10%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ +L++ G A+ G +GSGK++++ L+ + G + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENI---AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
++ SQ + +++ENI +Y + ++ ++ + I K + +T+ G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVSY-----DEYRYKSVVKACQLQQDITKFAEQDNTVLG 154
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA-ESERIVQDALVKIMTSRTTVV 567
E G LSGGQ+ RI++ARA+ K+ + LLD LD E++ + + K+M ++T ++
Sbjct: 155 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 214
Query: 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
V ++ +R AD I ++HQG GT EL
Sbjct: 215 VTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 1045 VSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNI 1104
VSF + + +N+ L+I G+ +A+ G +GSGK++++ LI + G +
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1105 ELPKFKLSWLRQQMGLVSQEPVLFNETIRTNI---AYGKQGGXXXXXXXXXXXXSNAHNF 1161
++ SQ + TI+ NI +Y +
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIGVSYDE------YRYKSVVKACQLQQD 141
Query: 1162 ISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDA-ESERVVQD 1220
I+ T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E+V +
Sbjct: 142 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 1221 ALERVMVNRTTVVVAHRLTTIKNADIIAVVKNG 1253
+ ++M N+T ++V ++ ++ AD I ++ G
Sbjct: 202 CVCKLMANKTRILVTSKMEHLRKADKILILHQG 234
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
+I SQ + +++ENI + + R+ I+ + I K + + + GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAH 570
LSGGQ+ RI++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ ++ AD I ++H+G GT EL
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 23/201 (11%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 69
Query: 1117 QMGLVSQEPVLFNETIRTNI---AYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
++ SQ + TI+ NI +Y + IS +
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 123
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTV 1232
GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +E+ + + + ++M N+T +
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 1233 VVAHRLTTIKNADIIAVVKNG 1253
+V ++ +K AD I ++ G
Sbjct: 184 LVTSKMEHLKKADKILILHEG 204
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 27/229 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI-DGIDIKKLQLK 447
EV SL V G L+G SG GK+T + ++ +P G++ I D + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 448 WIREK---IGLVSQEPILFA-TSLRENIAYG------KENATDQEIRTAIELANAAKFID 497
++ K I +V Q L+ ++ +NIA+ DQ +R EL + ++
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
+ P+ +LSGGQ+QR+A+ RAI++ P++ L+DE S LDA+ R+ A +
Sbjct: 135 RKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL-RVRMRAEL 182
Query: 558 KIMTSR---TTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
K + + TT+ V H ++ + D IAV+++G + + G+ DE+ P
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 17/238 (7%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDN--IELPK--F 1109
+V R + L + G+ + L+G SG GK+T + +I +P G + + + + P+
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 1110 KLSWLRQQMGLVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHG 1168
+ + + +V Q L+ + T+ NIA+ + A G
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL------G 128
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--M 1226
+ + +LSGGQ+QR+A+ RA+++ P++ L+DE S LDA+ ++ L+++
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 1227 VNRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASLVALHVSSS 1283
+ TT+ V H ++ + D IAV+ GV+ + GS D ++ D + VA + S
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD---EVYDKPANTFVAGFIGSP 243
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHG 511
+I SQ + +++ENI +G + + R+ I+ + I K + + + GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 512 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVVVAH 570
LS GQ+ +I++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++V
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 571 RLTTIRNADLIAVVHQGKIVEKGTHDEL 598
++ ++ AD I ++H+G GT EL
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 16/198 (8%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 99
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGER 1176
++ SQ + TI+ NI +G IS +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 1177 GVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTVVVA 1235
G+ LS GQ+ +I++ARAV K+ + LLD LD +E+ + + + ++M N+T ++V
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 1236 HRLTTIKNADIIAVVKNG 1253
++ +K AD I ++ G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 31/245 (12%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
IEL V FRY + + +G +VG++GSGK+T++ ++ AGE+
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA-AGEI 67
Query: 435 LIDGIDIKKLQLKWIREKIGLVSQEPI--LFATSLRENIAYG------KENATDQEIRTA 486
+DG L R+ +G V Q P + ++ E++A+ E+ + I+
Sbjct: 68 FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 487 IELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
+EL GL +A LSGGQKQR+AIA + ++ + L LDE S LD
Sbjct: 125 LELV-----------GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 547 ESERIVQDALVKIMTS-RTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIK----D 601
S+R + L + + ++V H L + + D I + G I G+ +E ++ D
Sbjct: 174 PSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDD 233
Query: 602 PEGPY 606
E P+
Sbjct: 234 VEIPF 238
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 20/232 (8%)
Query: 1040 IELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV 1099
IEL VSF+Y + +++ +GK +VG++GSGK+T++ ++ +G +
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA-AGEI 67
Query: 1100 LLDNIELPKFKLSWLRQQMGLVSQEPV--LFNETIRTNIAYGKQGGXXXXXXXXXXXXSN 1157
LD F LR+ +G V Q P + T+ ++A+ + S
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLE--------IMGLDESE 116
Query: 1158 AHNFISALPH--GYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
I + G + LSGGQKQR+AIA + ++ + L LDE S LD S+
Sbjct: 117 MRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 1216 RVVQDALERVMVN-RTTVVVAHRLTTIKNADIIAVVKNGVIAEQGSHDALMK 1266
R + LE + + ++V H L + + D I + NG I GS + ++
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 30/245 (12%)
Query: 373 GEIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAG 432
E++L +++ R+ +V SL + G L+G SG GK+T + + +P G
Sbjct: 5 AEVKLINIWKRFG---DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 433 EVLIDG---IDIKKLQLKWIREK-IGLVSQEPILFA-TSLRENIAYG------KENATDQ 481
++ I+ D +K +E+ + V Q L+ ++ +NIA+ + D+
Sbjct: 62 QIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDK 121
Query: 482 EIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEAT 541
+R E + +++ P+ +LSGGQ+QR+A+ RAI++ PK+ L DE
Sbjct: 122 RVREVAEXLGLTELLNRKPR-----------ELSGGQRQRVALGRAIIRRPKVFLXDEPL 170
Query: 542 SALDAESERIVQDALVKIMTSR---TTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDE 597
S LDA+ R+ A +K + + TT+ V H ++ D IAV ++G++ + GT DE
Sbjct: 171 SNLDAKL-RVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDE 229
Query: 598 LIKDP 602
+ P
Sbjct: 230 VYYKP 234
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL-DNIELPKFKLS 1112
DV ++L L I G+ + L+G SG GK+T + I +P G + + DN+ K
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1113 WL---RQQMGLVSQEPVLF-NETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHG 1168
++ + + V Q L+ + T+ NIA+ + A G
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXL------G 131
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERV--M 1226
+ + +LSGGQ+QR+A+ RA+++ PK+ L DE S LDA+ + L+++
Sbjct: 132 LTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ 191
Query: 1227 VNRTTVVVAH-RLTTIKNADIIAVVKNGVIAEQGSHD 1262
+ TT+ V H ++ D IAV G + + G+ D
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPD 228
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 22/211 (10%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIRE 451
+ + + G A+ G +G+GK++++ ++ +P G++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 452 KIGLVSQEPILFATSLRENI---AYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAG 508
+I SQ + +++ENI +Y + R+ I+ + I K + + + G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 509 EHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESER-IVQDALVKIMTSRTTVV 567
E G LS GQ+ +I++ARA+ K+ + LLD LD +E+ I + + K+M ++T ++
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 568 VAHRLTTIRNADLIAVVHQGKIVEKGTHDEL 598
V ++ ++ AD I ++H+G GT EL
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+ +++ I G+ +A+ G +G+GK++++ +I +P G K K S
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----------KIKHS---G 99
Query: 1117 QMGLVSQEPVLFNETIRTNI---AYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNV 1173
++ SQ + TI+ NI +Y + IS +
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDE------YRYRSVIKACQLEEDISKFAEKDNIVL 153
Query: 1174 GERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESER-VVQDALERVMVNRTTV 1232
GE G+ LS GQ+ +I++ARAV K+ + LLD LD +E+ + + + ++M N+T +
Sbjct: 154 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 1233 VVAHRLTTIKNADIIAVVKNG 1253
+V ++ +K AD I ++ G
Sbjct: 214 LVTSKMEHLKKADKILILHEG 234
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLV 456
SLH+ SG A++G +G+GKST++ L+ + P GE + G ++ Q K + ++
Sbjct: 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90
Query: 457 SQ-EPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLS 515
Q + F S+ E I G+ + R A++ A D L +A LS
Sbjct: 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT--DCL-----ALAQRDYRVLS 143
Query: 516 GGQKQRIAIARAILK------NPKILLLDEATSALDAESERIVQDALVKIMTSRTTVV-- 567
GG++QR+ +AR + + P+ L LDE TSALD ++ L ++ V
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203
Query: 568 VAHRLT-TIRNADLIAVVHQGKIVEKGTHDELI 599
V H L AD I ++ QGK+V GT +E++
Sbjct: 204 VLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSG--HVLLDNIE--LPKFKLS 1112
+ ++ L I SG+ VA++G +G+GKST++ L+ + P G H+L N+ PK L+
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK-ALA 84
Query: 1113 WLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETN 1172
R M S+ F+ + + GG + ++ Y
Sbjct: 85 RTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT--DCLALAQRDYRV- 141
Query: 1173 VGERGVQLSGGQKQRIAIARAVLK------NPKILLLDEATSALD 1211
LSGG++QR+ +AR + + P+ L LDE TSALD
Sbjct: 142 -------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 27/226 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
EV + +L + G VG SG GKST++ ++ +G++ I K++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTP 71
Query: 449 IREK-IGLVSQEPILFAT-SLRENIAYG------KENATDQEIRTAIELANAAKFIDKLP 500
E+ +G+V Q L+ S+ EN+++G K+ +Q + E+ A +D+ P
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE---SERIVQDALV 557
K L SGGQ+QR+AI R ++ P + LLDE S LDA RI L
Sbjct: 132 KAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 558 KIMTSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
K + RT + V H ++ + AD I V+ G++ + G EL P
Sbjct: 181 KRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
+V + +++ L I G+ V VG SG GKST++ +I SG + + + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA- 73
Query: 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
+ +G+V Q L+ ++ N+++G K G N + L H +
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV---NQVAEVLQLAHLLD- 128
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNR 1229
+ LSGGQ+QR+AI R ++ P + LLDE S LDA ++ + R+ + R
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1230 TTVVVAH-RLTTIKNADIIAVVKNGVIAEQG 1259
T + V H ++ + AD I V+ G +A+ G
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 27/226 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
EV + +L + G VG SG GKST++ ++ +G++ I K++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTP 71
Query: 449 IREK-IGLVSQEPILFAT-SLRENIAYG------KENATDQEIRTAIELANAAKFIDKLP 500
E+ +G+V Q L+ S+ EN+++G K+ +Q + E+ A +D+ P
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE---SERIVQDALV 557
K L SGGQ+QR+AI R ++ P + LLDE S LDA RI L
Sbjct: 132 KAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 558 KIMTSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
K + RT + V H ++ + AD I V+ G++ + G EL P
Sbjct: 181 KRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
+V + +++ L I G+ V VG SG GKST++ +I SG + + + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA- 73
Query: 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
+ +G+V Q L+ ++ N+++G K G N + L H +
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV---NQVAEVLQLAHLLD- 128
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNR 1229
+ LSGGQ+QR+AI R ++ P + LLDE S LDA ++ + R+ + R
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1230 TTVVVAH-RLTTIKNADIIAVVKNGVIAEQG 1259
T + V H ++ + AD I V+ G +A+ G
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 27/226 (11%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
EV + +L + G VG SG GKST++ ++ +G++ I K++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTP 71
Query: 449 IREK-IGLVSQEPILFAT-SLRENIAYG------KENATDQEIRTAIELANAAKFIDKLP 500
E+ +G+V Q L+ S+ EN+++G K+ +Q + E+ A +D+ P
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131
Query: 501 KGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE---SERIVQDALV 557
K L SGGQ+QR+AI R ++ P + LLD+ S LDA RI L
Sbjct: 132 KAL-----------SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLH 180
Query: 558 KIMTSRTTVVVAH-RLTTIRNADLIAVVHQGKIVEKGTHDELIKDP 602
K + RT + V H ++ + AD I V+ G++ + G EL P
Sbjct: 181 KRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSW 1113
+V + +++ L I G+ V VG SG GKST++ +I SG + + + +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA- 73
Query: 1114 LRQQMGLVSQEPVLFNE-TIRTNIAYG-KQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
+ +G+V Q L+ ++ N+++G K G N + L H +
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV---NQVAEVLQLAHLLD- 128
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM--VNR 1229
+ LSGGQ+QR+AI R ++ P + LLD+ S LDA ++ + R+ + R
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1230 TTVVVAH-RLTTIKNADIIAVVKNGVIAEQG 1259
T + V H ++ + AD I V+ G +A+ G
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 26/215 (12%)
Query: 382 FRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI 441
F Y A E +F + + G A++GQ+G GKST++ L+ + P G++
Sbjct: 12 FYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------- 62
Query: 442 KKLQLKWIREKIGLVSQ---EPILFATSLRENIAYGKENATDQEIR-TAIELANAAKFID 497
+ + IG V Q P FA S+ + + G+ + + + + A + +D
Sbjct: 63 ------EVYQSIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 498 KLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALV 557
L L +A T LSGGQ+Q I IARAI K++LLDE TSALD ++ IV L+
Sbjct: 115 YL--NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 558 KIMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEK 592
+ S+ VV TT + ++A+ ++ ++ K
Sbjct: 173 DLAQSQNMTVV---FTTHQPNQVVAIANKTLLLNK 204
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 31/206 (15%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQ 1116
+F+ L + G +A++G++G GKST++ L+ + P G + + Q
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQ 66
Query: 1117 QMGLVSQ---EPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNF---ISALPHGYE 1170
+G V Q P F ++ + G+ +H++ + AL +
Sbjct: 67 SIGFVPQFFSSP--FAYSVLDIVLMGR------STHINTFAKPKSHDYQVAMQALDYLNL 118
Query: 1171 TNVGERG-VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
T++ +R LSGGQ+Q I IARA+ K++LLDE TSALD ++ +V L + ++
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 1230 TTVVVAHRLTTIKNADIIAVVKNGVI 1255
VV TT + ++A+ ++
Sbjct: 179 NMTVV---FTTHQPNQVVAIANKTLL 201
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 14/232 (6%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+E++ ++ Y A + G L VP G L+G +G+GK+T +S + G++
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 435 LIDGIDIKKLQLKWI-REKIGLVSQEPILFAT-SLRENIAYGKENATDQE-IRTAIELAN 491
+ +G DI I R I LV + +F ++ EN+ G N D+E I+ +E
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE--- 120
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
+I L L + G LSGG++Q +AI RA+ PK+L DE + L
Sbjct: 121 ---WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSE 177
Query: 552 VQDALVKIMTSRTTVVVAHR--LTTIRNADLIAVVHQGKIVEKGTHDELIKD 601
V + + KI TT+++ + L ++ A V+ G+IV +G EL+ +
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 14/217 (6%)
Query: 1055 VQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIEL---PKFKL 1111
+ + + L +P G+ V L+G +G+GK+T ++ I G ++ + ++ P +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 1112 SWLRQQMGLVSQEPVLFNE-TIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYE 1170
+ R + LV + +F E T+ N+ G + S P E
Sbjct: 79 N--RXGIALVPEGRRIFPELTVYENLXXG-----AYNRKDKEGIKRDLEWIFSLFPRLKE 131
Query: 1171 TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRT 1230
+ + G LSGG++Q +AI RA+ PK+L DE + L V + ++++ T
Sbjct: 132 -RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 1231 TVVVAHR--LTTIKNADIIAVVKNGVIAEQGSHDALM 1265
T+++ + L +K A V++ G I +G L+
Sbjct: 191 TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 17/215 (7%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIR 450
+I G S + G L+G +G+GK+T + ++ P +G V + G ++ + + +R
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87
Query: 451 EKIGLVSQEPILFATSLRENIAY-----GKENATDQEIRTAIELANAAKFIDKLPKGLDT 505
+ I + +E + + I Y G ++ EI +E A GL
Sbjct: 88 KLISYLPEEAGAYRNM--QGIEYLRFVAGFYASSSSEIEEMVERATEIA-------GLGE 138
Query: 506 MAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTT 565
+ + S G +++ IARA++ NP++ +LDE TS LD + R V+ L + T
Sbjct: 139 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 566 VVV-AHRLTTIRN-ADLIAVVHQGKIVEKGTHDEL 598
++V +H + + D IA++H G IVE GT +EL
Sbjct: 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 1056 QIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL---DNIELP---KF 1109
+I + + I G+ L+G +G+GK+T + +I P SG V + + +E P +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 1110 KLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGY 1169
+S+L ++ G AY G S++ +
Sbjct: 89 LISYLPEEAG-----------------AYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1170 E-----TNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALER 1224
E + +R S G +++ IARA++ NP++ +LDE TS LD + R V+ L++
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 1225 VMVNRTTVVV-AHRLTTIKN-ADIIAVVKNGVIAEQGSHDAL 1264
T++V +H + ++ D IA++ NG I E G+ + L
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
E + G S+ V G ++G +GSGKST+I+++ F D G V + DI +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 449 IREKIGLV----SQEPILFATSLRENIAYGKENATDQEIRTAIE---LANAAKFIDKLPK 501
+ G+V + +P+ T L EN+ G+ N + + + + + ++K K
Sbjct: 79 LYH-YGIVRTFQTPQPLKEMTVL-ENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 502 GLDTMAGEH-----GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL 556
L+ + H +LSGGQ + + I RA++ NPK++++DE + + + + D
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIF 193
Query: 557 VKIMTSR----TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
++ + T +++ HRL + N D + V+ G+I+ +G +E IK+
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
+ +S+ G ++G +GSGKST+I +I F D G V +N ++ + + L G+
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 1121 VS--QEPVLFNE-TIRTNIAYGK--QGGXXXXXXXXXXXXSNAHNFISA---------LP 1166
V Q P E T+ N+ G+ G + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESERVVQDALERV 1225
H Y+ GE LSGGQ + + I RA++ NPK++++DE + + + + LE
Sbjct: 145 HLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1226 MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
T +++ HRL + N D + V+ NG I +G + +K
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 23/192 (11%)
Query: 391 QIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDI---KKLQLK 447
+I G SL V G +++G SGSGKST++ ++ P G+V ++G ++ + +L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 448 WIR-EKIGLVSQEPILFA--TSLRENI-----AYGKENATDQEIRTAIELANAAKFIDKL 499
+R K+G V Q L T+L EN+ GK +E + +L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTAL-ENVIVPMLKMGKPKKEAKE--------RGEYLLSEL 128
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
GL +LSGG++QR+AIARA+ P +L DE T LD+ + + V D +KI
Sbjct: 129 --GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 560 MTSRTTVV-VAH 570
T++V V H
Sbjct: 187 NEGGTSIVMVTH 198
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 32/229 (13%)
Query: 1042 LRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLL 1101
LR + K R +I + + LS+ G+ V+++G SGSGKST++ ++ P G V L
Sbjct: 5 LRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 1102 DNIELP---KFKLSWLR-QQMGLVSQ------EPVLFNETIRTNIAYGKQGGXXXXXXXX 1151
+ E+ + +LS LR +++G V Q E I + GK
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKP---------K 114
Query: 1152 XXXXSNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+S L G + + +LSGG++QR+AIARA+ P +L DE T LD
Sbjct: 115 KEAKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 1212 AESERVVQDALERVMVNRTTVV----------VAHRLTTIKNADIIAVV 1250
+ + + V D ++ T++V + HR +K+ ++ +
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEI 221
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
E + G S+ V G ++G +GSGKST+I+++ F D G V + DI +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 449 IREKIGLV----SQEPILFATSLRENIAYGKENATDQEIRTAIE---LANAAKFIDKLPK 501
+ G+V + +P+ T L EN+ G+ N + + + + + ++K K
Sbjct: 79 LYH-YGIVRTFQTPQPLKEMTVL-ENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 502 GLDTMAGEH-----GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL 556
L+ + H +LSGGQ + + I RA++ NPK++++D+ + + + + D
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV---APGLAHDIF 193
Query: 557 VKIMTSR----TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
++ + T +++ HRL + N D + V+ G+I+ +G +E IK+
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
+ +S+ G ++G +GSGKST+I +I F D G V +N ++ + + L G+
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 1121 VS--QEPVLFNE-TIRTNIAYGK--QGGXXXXXXXXXXXXSNAHNFISA---------LP 1166
V Q P E T+ N+ G+ G + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESERVVQDALERV 1225
H Y+ GE LSGGQ + + I RA++ NPK++++D+ + + + + LE
Sbjct: 145 HLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 1226 MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
T +++ HRL + N D + V+ NG I +G + +K
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 389 EVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKW 448
E + G S+ V G ++G +GSGKST+I+++ F D G V + DI +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 449 IREKIGLV----SQEPILFATSLRENIAYGKENATDQEIRTAIE---LANAAKFIDKLPK 501
+ G+V + +P+ T L EN+ G+ + + + + + ++K K
Sbjct: 79 LYH-YGIVRTFQTPQPLKEMTVL-ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 502 GLDTMAGEH-----GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDAL 556
L+ + H +LSGGQ + + I RA++ NPK++++DE + + + + D
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIF 193
Query: 557 VKIMTSR----TTVVVAHRLTTIRN-ADLIAVVHQGKIVEKGTHDELIKD 601
++ + T +++ HRL + N D + V+ G+I+ +G +E IK+
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 21/222 (9%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGL 1120
+ +S+ G ++G +GSGKST+I +I F D G V +N ++ + + L G+
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGI 84
Query: 1121 VS--QEPVLFNE-TIRTNIAYGK--QGGXXXXXXXXXXXXSNAHNFISA---------LP 1166
V Q P E T+ N+ G+ G + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 1167 HGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSAL-DAESERVVQDALERV 1225
H Y+ GE LSGGQ + + I RA++ NPK++++DE + + + + LE
Sbjct: 145 HLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1226 MVNRTTVVVAHRLTTIKN-ADIIAVVKNGVIAEQGSHDALMK 1266
T +++ HRL + N D + V+ NG I +G + +K
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLV--ERFYDPDAGEVLIDGIDIKKLQLK-W 448
I G SL V G A++G +GSGKST+ + + Y+ G V G D+ L +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 449 IREKIGLVSQEPI---------LFATSLRENIAY-GKENATDQEIRTAIELANAAKFIDK 498
E I + Q P+ T+L +Y G+E + + +E A + K
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 151
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
+P+ L T + G SGG+K+R I + + P++ +LDE+ S LD ++ ++V D +
Sbjct: 152 MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209
Query: 559 IMT-SRTTVVVAH--RLTTIRNADLIAVVHQGKIVEKG 593
+ R+ ++V H R+ D + V++QG+IV+ G
Sbjct: 210 LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV-NRTTVVVAH 1236
V SGG+K+R I + + P++ +LDE+ S LD ++ +VV D + + R+ ++V H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 1237 --RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
R+ D + V+ G I + G + ++ + Y L
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWL 263
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI 1088
D I R L L + G+ A++G +GSGKST+ A +
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLV--ERFYDPDAGEVLIDGIDIKKLQLK-W 448
I G SL V G A++G +GSGKST+ + + Y+ G V G D+ L +
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 449 IREKIGLVSQEPI---------LFATSLRENIAY-GKENATDQEIRTAIELANAAKFIDK 498
E I + Q P+ T+L +Y G+E + + +E A + K
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 132
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 558
+P+ L T + G SGG+K+R I + + P++ +LDE+ S LD ++ ++V D +
Sbjct: 133 MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 190
Query: 559 IMT-SRTTVVVAH--RLTTIRNADLIAVVHQGKIVEKG 593
+ R+ ++V H R+ D + V++QG+IV+ G
Sbjct: 191 LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMV-NRTTVVVAH 1236
V SGG+K+R I + + P++ +LDE+ S LD ++ +VV D + + R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 1237 --RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
R+ D + V+ G I + G + ++ + Y L
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWL 244
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 1054 DVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALI 1088
D I R L L + G+ A++G +GSGKST+ A +
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 47
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGE 433
++E+RD+ Y + + ++ + G G +G GK+T++ + + P GE
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 434 VLIDGIDIKKLQLK--WIREKIGL---VSQEPILFATSLRENIAYGKENATDQEIRTAIE 488
++ +G+ I K++ K ++ E+I + +S E L A + + K EI A+E
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-----NEIMDALE 120
Query: 489 LANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
KL +LS G +R+ +A +L N +I +LD+ A+D +S
Sbjct: 121 SVEVLDLKKKL------------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 549 ERIVQDALVKIMTSRTTVVVAHR 571
+ V ++++I+ + V+++ R
Sbjct: 169 KHKVLKSILEILKEKGIVIISSR 191
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Query: 1037 GGAIELRCVSFKYPTRPDVQIFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDS 1096
G +E+R +S Y D + + ++I G V G +G GK+T++ I + P
Sbjct: 8 GSKLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63
Query: 1097 GHVLLDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIA-YGKQGGXXXXXXXXXXXX 1155
G ++ + + + K K ++ + + ++ + YG +
Sbjct: 64 GEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-------------- 109
Query: 1156 SNAHNFISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESE 1215
N + + AL ++ ++ +LS G +R+ +A +L N +I +LD+ A+D +S+
Sbjct: 110 VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 1216 RVVQDALERVMVNRTTVVVAHR 1237
V ++ ++ + V+++ R
Sbjct: 170 HKVLKSILEILKEKGIVIISSR 191
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 34/239 (14%)
Query: 374 EIELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLV--ERFYDPDA 431
++E+RD++ I G +L VP G AL+G +G+GKST+ ++ + Y +
Sbjct: 3 QLEIRDLWASIDGE---TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER 59
Query: 432 GEVLIDGIDIKKLQL-KWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAIEL- 489
GE+L+DG +I +L + R+ + L Q P+ N +R A++
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANF-----------LRLALQAK 108
Query: 490 ----ANAAKFIDKLPKGLDTMAGEH-------GTQLSGGQKQRIAIARAILKNPKILLLD 538
A+F K+ K L+ + + SGG+K+R I + ++ P +LD
Sbjct: 109 LGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD 168
Query: 539 EATSALDAESERIVQDALVKIMTSRT--TVVVAH--RLTTIRNADLIAVVHQGKIVEKG 593
E S LD ++ ++V V M +V+ H R+ D + V+ G++V G
Sbjct: 169 ETDSGLDIDALKVVARG-VNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 16/230 (6%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALI--ERFYDPDSGHVLLDN---IELPKFKL 1111
I + + L +P G+ AL+G +G+GKST+ ++ + Y + G +LLD +EL +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1112 SWLRQQMGLVSQEPVLFNETIRTN---IAYGKQGGXXXXXXXXXXXXSNAHNFISALPHG 1168
+ R+ + L Q PV N +A + G A +
Sbjct: 78 A--RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD-WDES 134
Query: 1169 YETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVM-V 1227
Y + G SGG+K+R I + ++ P +LDE S LD ++ +VV + +
Sbjct: 135 YLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192
Query: 1228 NRTTVVVAH--RLTTIKNADIIAVVKNGVIAEQGSHDALMKITDGAYASL 1275
N +V+ H R+ D + V+ +G + G + +++ Y L
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQ-LKWIREKIG 454
S V +G LVG +G+GKST+++ + G + G ++ K +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAY 77
Query: 455 LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQL 514
L Q+ FAT + + + + T E+ ++A A DKL G QL
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALALDDKL--------GRSTNQL 127
Query: 515 SGGQKQRIAIARAILK-----NP--KILLLDEATSALDAESERIVQDALVKIMTSRTT-- 565
SGG+ QR+ +A +L+ NP ++LLLD+ ++LD Q AL KI+++ +
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQG 183
Query: 566 ---VVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
V+ +H L T+R+A ++ GK++ G +E++ P
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLK-----NP--KILLLDEATSALDAESERVVQDAL 1222
+ +G QLSGG+ QR+ +A VL+ NP ++LLLD+ ++LD + + L
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKIL 176
Query: 1223 ERVMVNRTTVVV-AHRLT-TIKNADIIAVVKNGVIAEQGSHDALM 1265
+ +V+ +H L T+++A ++K G + G + ++
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 37/225 (16%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
S V +G LVG +G+GKST+++ + G + G ++ W K+ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEA----WSATKLAL 73
Query: 456 -----VSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
Q+ FAT + + + + T E+ ++A A DKL G
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALALDDKL--------GRS 123
Query: 511 GTQLSGGQKQRIAIARAILK-----NP--KILLLDEATSALDAESERIVQDALVKIMTSR 563
QLSGG+ QR+ +A +L+ NP ++LLLD+ +LD Q AL KI+++
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSAL 179
Query: 564 TT-----VVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+ V+ +H L T+R+A ++ GK++ G +E++ P
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLK-----NP--KILLLDEATSALDAESERVVQDAL 1222
+ +G QLSGG+ QR+ +A VL+ NP ++LLLD+ +LD + + L
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKIL 176
Query: 1223 ERVMVNRTTVVV-AHRLT-TIKNADIIAVVKNGVIAEQGSHDALM 1265
+ +V+ +H L T+++A ++K G + G + ++
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 37/247 (14%)
Query: 357 KIDPYDTSGITL-EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVP-----SGTTAALVG 410
+ PY+ L E+++ E R+ YP V+ + F L V G +VG
Sbjct: 321 RFRPYEIRFTKLSERVDVE---RETLVEYPRL--VKDYGSFKLEVEPGEIRKGEVIGIVG 375
Query: 411 QSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLREN 470
+G GK+T + ++ +P G+V D K Q +I+ + E + S + N
Sbjct: 376 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYELLSKIDSSKLN 433
Query: 471 IAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530
+ K EL ID + ++ LSGG+ QR+AIA +L+
Sbjct: 434 SNFYK-----------TELLKPLGIIDLYDRNVE--------DLSGGELQRVAIAATLLR 474
Query: 531 NPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGK 588
+ I LLDE ++ LD E V A+ +M +T +VV H + I +V +G
Sbjct: 475 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG- 533
Query: 589 IVEKGTH 595
E G H
Sbjct: 534 --EPGRH 538
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 39/206 (18%)
Query: 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQ 1123
I G+ + +VG +G GK+T + ++ +P G V D +K +++ +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEY----- 416
Query: 1124 EPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISAL--PHG----YETNVGERG 1177
+G N++ + + L P G Y+ NV +
Sbjct: 417 -----------------EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED-- 457
Query: 1178 VQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVA 1235
LSGG+ QR+AIA +L++ I LLDE ++ LD E V A+ +M +T +VV
Sbjct: 458 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
Query: 1236 HRLTTIKNADIIAVVKNGVIAEQGSH 1261
H + I +V G E G H
Sbjct: 516 HDVLMIDYVSDRLIVFEG---EPGRH 538
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1172 NVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-R 1229
NV +R + QLSGG+ QR+AIA A+L+ DE +S LD V + R+ +
Sbjct: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 265
Query: 1230 TTVVVAHRLTTIKN-ADIIAVV 1250
+VV H L + +D+I VV
Sbjct: 266 AVLVVEHDLAVLDYLSDVIHVV 287
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-RTTVVVAHR 571
QLSGG+ QR+AIA A+L+ DE +S LD V + ++ + +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 572 LTTIRN-ADLIAVVH 585
L + +D+I VV+
Sbjct: 274 LAVLDYLSDVIHVVY 288
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKL--QLKWI 449
I S + G L G +G+GK+T+++++ + +G V + G K+ + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 450 REKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI-----------ELANAAKFIDK 498
R+ IG VS SL E G E D I A E+ N A + K
Sbjct: 96 RQHIGFVSH-------SLLEKFQEG-ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLK 147
Query: 499 LPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
L G A ++ LS G+KQR+ IARA+ P++L+LDE + LD
Sbjct: 148 LV-GXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 1057 IFRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPK--FKLSWL 1114
I + + I G L G +G+GK+T++ ++ + SG V L K + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 1115 RQQMGLVSQ---EPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYET 1171
RQ +G VS E E + + G + AH + + G
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV--GXSA 153
Query: 1172 NVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
+ LS G+KQR+ IARA+ P++L+LDE + LD
Sbjct: 154 KAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 37/247 (14%)
Query: 357 KIDPYDTSGITL-EKIEGEIELRDVYFRYPARPEVQIFAGFSLHVP-----SGTTAALVG 410
+ PY+ L E+++ E R+ YP V+ + F L V G +VG
Sbjct: 335 RFRPYEIRFTKLSERVDVE---RETLVEYPRL--VKDYGSFKLEVEPGEIRKGEVIGIVG 389
Query: 411 QSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPILFATSLREN 470
+G GK+T + ++ +P G+V D K Q +I+ + E + S + N
Sbjct: 390 PNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVYELLSKIDSSKLN 447
Query: 471 IAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILK 530
+ K EL ID + ++ LSGG+ QR+AIA +L+
Sbjct: 448 SNFYK-----------TELLKPLGIIDLYDRNVE--------DLSGGELQRVAIAATLLR 488
Query: 531 NPKILLLDEATSALDAESERIVQDALVKIM--TSRTTVVVAHRLTTIRNADLIAVVHQGK 588
+ I LLDE ++ LD E V A+ +M +T +VV H + I +V +G
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG- 547
Query: 589 IVEKGTH 595
E G H
Sbjct: 548 --EPGRH 552
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 1064 SIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQMGLVSQ 1123
I G+ + +VG +G GK+T + ++ +P G V D +K +++ +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVY 435
Query: 1124 EPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHG----YETNVGERGVQ 1179
E + ++ + N SN + P G Y+ NV +
Sbjct: 436 ELLSKIDSSKLN--------------------SNFYKTELLKPLGIIDLYDRNVED---- 471
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVAHR 1237
LSGG+ QR+AIA +L++ I LLDE ++ LD E V A+ +M +T +VV H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 1238 LTTIKNADIIAVVKNGVIAEQGSH 1261
+ I +V G E G H
Sbjct: 532 VLMIDYVSDRLIVFEG---EPGRH 552
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1172 NVGERGV-QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-R 1229
NV +R + QLSGG+ QR+AIA A+L+ DE +S LD V + R+ +
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 279
Query: 1230 TTVVVAHRLTTIKN-ADIIAVV 1250
+VV H L + +D+I VV
Sbjct: 280 AVLVVEHDLAVLDYLSDVIHVV 301
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 513 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-RTTVVVAHR 571
QLSGG+ QR+AIA A+L+ DE +S LD V + ++ + +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 572 LTTIRN-ADLIAVVH 585
L + +D+I VV+
Sbjct: 288 LAVLDYLSDVIHVVY 302
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
S V +G LVG +G+GKST+++ G + G ++ W K+ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEA----WSATKLAL 73
Query: 456 -----VSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
Q+ FAT + + + + T E+ ++A A DKL G
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALALDDKL--------GRS 123
Query: 511 GTQLSGGQKQRIAIARAILK-----NP--KILLLDEATSALDAESERIVQDALVKIMTSR 563
QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD Q AL KI+++
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSAL 179
Query: 564 TT-----VVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
+ V +H L T+R+A ++ GK + G +E++ P
Sbjct: 180 SQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP 224
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 11/64 (17%)
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLK-----NP--KILLLDEATSALDAESERVVQDAL 1222
+ +G QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 1223 ERVM 1226
++++
Sbjct: 173 DKIL 176
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 37/225 (16%)
Query: 396 FSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGL 455
S V +G LVG +G+GKST+++ G + G ++ W K+ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLEA----WSATKLAL 73
Query: 456 -----VSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEH 510
Q+ FAT + + + + T E+ ++A A DKL G
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--DVAGALALDDKL--------GRS 123
Query: 511 GTQLSGGQKQRIAIARAILK-----NP--KILLLDEATSALDAESERIVQDALVKIMTS- 562
QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD Q AL KI+++
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSAL 179
Query: 563 ----RTTVVVAHRLT-TIRNADLIAVVHQGKIVEKGTHDELIKDP 602
V +H L T+R+A ++ GK + G +E++ P
Sbjct: 180 CQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP 224
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 11/64 (17%)
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLK-----NP--KILLLDEATSALDAESERVVQDAL 1222
+ +G QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSAL 172
Query: 1223 ERVM 1226
++++
Sbjct: 173 DKIL 176
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 50/271 (18%)
Query: 382 FRYPARPEVQIFAGFSLHVPSGTTA-----ALVGQSGSGKSTVISLVERFYDPDAGEVLI 436
F YP+ + Q F L+V G + ++G++G+GK+T+I L+ PD G+
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ--- 408
Query: 437 DGIDIKKLQLKWIREKI-----GLVSQEPILFATSLRENIAYGKENATDQEIRTAIELAN 491
DI KL + +KI G V Q LF +R + + +T +
Sbjct: 409 ---DIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQF-------LNPQFQTDV---- 451
Query: 492 AAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERI 551
P +D + + LSGG+ QR+AI A+ I L+DE ++ LD+E +RI
Sbjct: 452 ------VKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE-QRI 504
Query: 552 VQDALVK---IMTSRTTVVVAHRLTTIRNADLIAVVHQGKIVEKGTHDELIKDPEGPYTQ 608
+ +++ + +T +V H +V +G I K H + PE T
Sbjct: 505 ICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG-IPSKNAH---ARAPESLLTG 560
Query: 609 LVR----LQEGSKEAEDALATDADKLDSSFD 635
R L + ++ +KLDS D
Sbjct: 561 CNRFLKNLNVTFRRDPNSFRPRINKLDSQMD 591
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 31/198 (15%)
Query: 1046 SFKYPTRPDVQIFRNLCLSIPSGK-----TVALVGESGSGKSTVIALIERFYDPDSGHVL 1100
+F YP+ Q + L++ G+ + ++GE+G+GK+T+I L+ PD G
Sbjct: 353 AFSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ-- 408
Query: 1101 LDNIELPKFKLSWLRQQMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHN 1160
++PK +S Q++ F T+R + + K G
Sbjct: 409 ----DIPKLNVSMKPQKIA------PKFPGTVR-QLFFKKIRGQFLNPQFQTDVVK---- 453
Query: 1161 FISALPHGYETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQD 1220
P + + + LSGG+ QR+AI A+ I L+DE ++ LD+E +
Sbjct: 454 -----PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK 508
Query: 1221 ALERVMVN--RTTVVVAH 1236
+ R +++ +T +V H
Sbjct: 509 VIRRFILHNKKTAFIVEH 526
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 396 FSLH-VPS---GTTAALVGQSGSGKSTVISLVE--------RFYDPDAGEVLID---GID 440
F LH +P+ G LVG +G GKST + ++ RF DP + +I G +
Sbjct: 92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE 151
Query: 441 IKKLQLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQ-----EIRTAIELANAAKF 495
++ K + + I + +NI + + ++R + ++
Sbjct: 152 LQNYFTKMLEDDIKAI------IKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRY 205
Query: 496 IDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 555
I L L+ + +LSGG+ QR AI + ++ + + DE +S LD + +R+
Sbjct: 206 IKIL--QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK-QRLNAAQ 262
Query: 556 LVK--IMTSRTTVVVAHRLTTIRN-ADLIAVVH 585
+++ + ++ + V H L+ + +D + +++
Sbjct: 263 IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 21/198 (10%)
Query: 1068 GKTVALVGESGSGKSTVIALIE--------RFYDPDSGHVLLDNI---ELPKFKLSWLRQ 1116
G+ + LVG +G GKST + ++ RF DP ++ EL + L
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 1117 QMGLVSQEPVLFNETIRTNIAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVGER 1176
+ + + + N I I Q + +I L NV +R
Sbjct: 163 DIKAIIKPQYVDN--IPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL---QLENVLKR 217
Query: 1177 GVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRT--TVV 1233
++ LSGG+ QR AI + ++ + + DE +S LD + +R+ + R ++ T +
Sbjct: 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK-QRLNAAQIIRSLLAPTKYVIC 276
Query: 1234 VAHRLTTIKN-ADIIAVV 1250
V H L+ + +D + ++
Sbjct: 277 VEHDLSVLDYLSDFVCII 294
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 508 GEHGTQLSGGQKQRIAIARAILKNP---KILLLDEATSALDAESERIVQDALVKIMTS-R 563
G+ T LSGG+ QRI +A + K + +LDE T L E R + + L +++
Sbjct: 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN 859
Query: 564 TTVVVAHRLTTIRNADLIAVV------HQGKIVEKGTHDELIKDP 602
T +V+ H L I+NAD I + G IV GT +E+ K+P
Sbjct: 860 TVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPK---ILLLDEATSALDAESERVVQDALER 1224
GY +G+ LSGG+ QRI +A + K + +LDE T L E R + + L R
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 1225 VMVNR--TTVVVAHRLTTIKNADII 1247
+V+R T +V+ H L IKNAD I
Sbjct: 854 -LVDRGNTVIVIEHNLDVIKNADHI 877
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 512 TQLSGGQKQRIAIARAILKNPK--ILLLDEATSALDA-ESERIVQDALVKIMT-SRTTVV 567
T LSGG+ QRI +A I I +LDE T L ++ER+++ L K+ T +V
Sbjct: 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIV 521
Query: 568 VAHRLTTIRNADLIAVVHQG------KIVEKGTHDELIKDPEGPYT 607
V H IRNAD I + G ++V +GT DEL+K+P+ T
Sbjct: 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLT 567
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 1180 LSGGQKQRIAIARAVLKNPK--ILLLDEATSALDA-ESERVVQDALERVMVNRTTVVVAH 1236
LSGG+ QRI +A + I +LDE T L ++ER+++ + + T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1237 RLTTIKNADIIAVVKNGV------IAEQGSHDALMKITDGA 1271
I+NAD I + G + QG+ D L+K D +
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSS 565
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 387 RPEVQIFAGFSLHVPSGTTA-ALVGQSGSGKSTVI-----SLVERFYDPDA----GEVL- 435
R +V F F L P T ++G++G GK+TV+ ++ F DP++ EVL
Sbjct: 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLK 67
Query: 436 -IDGIDI----KKL---QLKWIREKIGLVSQEPILFATSLRENIAYGKENATDQEIRTAI 487
G +I K+L +LK I KI V ++ E + E E++ +
Sbjct: 68 RFRGKEIYNYFKELYSNELK-IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL 126
Query: 488 ELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAE 547
+ N + + LSGG QR+ +A ++L+ + + D+ +S LD
Sbjct: 127 NMTN--------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172
Query: 548 SERIVQDALVKIMTSRTTVVVAHRLTTIRN-ADLIAVVH 585
+ A+ +++ ++ +VV H L + DLI +++
Sbjct: 173 ERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY 211
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 1170 ETNVGERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNR 1229
E+NV + LSGG+ Q++ IA + K + +LD+ +S LD E +V A++RV R
Sbjct: 380 ESNVND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER 435
Query: 1230 --TTVVVAHRLT 1239
T ++ H L+
Sbjct: 436 KAVTFIIDHDLS 447
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 489 LANAAKFIDKLPKGLD--TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDA 546
L+ ++ F +++ K L+ + + LSGG+ Q++ IA + K + +LD+ +S LD
Sbjct: 359 LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 547 ESERIVQDALVKIMTSR--TTVVVAHRLT 573
E IV A+ ++ R T ++ H L+
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LSGG QR+ +A ++L+ + + D+ +S LD + A+ ++ N+ +VV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 1240 TIKN-ADIIAVV 1250
+ D+I ++
Sbjct: 199 VLDYLTDLIHII 210
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1172 NVGERGVQ-LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN-R 1229
NV ER +Q LSGG+ QR+AIA A+L+N DE +S LD A+ R+ +
Sbjct: 150 NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 1230 TTVVVAHRLTTIKN-ADIIAVV 1250
+ +VV H L + +DII VV
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVV 231
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 500 PKGLDTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKI 559
P G+ + +LSGG+ QR+AIA +L++ I LLDE ++ LD E V A+ +
Sbjct: 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 560 M--TSRTTVVVAHRLTTI 575
+T +VV H + I
Sbjct: 448 XEKNEKTALVVEHDVLXI 465
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 1179 QLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVN--RTTVVVAH 1236
+LSGG+ QR+AIA +L++ I LLDE ++ LD E V A+ + +T +VV H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1237 RLTTI 1241
+ I
Sbjct: 461 DVLXI 465
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 400 VPSGTTAALVGQSGSGKSTVISLV------ERFYDPDAGEVLIDGIDIKKLQLKWIREKI 453
V G +VG +G+GKST + ++ D D+ + +I +LQ + + K
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 454 G---------LVSQEPILFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLD 504
G V P + E + E +E+ A+EL N +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE---------- 153
Query: 505 TMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTS-R 563
LSGG+ QR+AIA A+L+N DE +S LD A+ ++ +
Sbjct: 154 ----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209
Query: 564 TTVVVAHRLTTIRN-ADLIAVVH 585
+ +VV H L + +D+I VV+
Sbjct: 210 SVLVVEHDLAVLDYLSDIIHVVY 232
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
LSGG K ++A+ARAVL+N ILLLDE T+ LD
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 504 DTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALD 545
D M + LSGG K ++A+ARA+L+N ILLLDE T+ LD
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAE 959
Query: 1240 TIKN-ADIIAVVKNGVIAEQGSH 1261
KN + + VK+G + G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ ++ F+YP + QI + + A++G +G+GKST+I+++ P +GEV
Sbjct: 672 VKVTNMEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
LSGG K ++A+ARAVL+N ILLLDE T+ LD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALD 545
LSGG K ++A+ARA+L+N ILLLDE T+ LD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAE 959
Query: 1240 TIKN-ADIIAVVKNGVIAEQGSH 1261
KN + + VK+G G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 502 GLDTMAGEHGT--QLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
GLD H LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ + F+YP + QI + + A++G +G+GKST+I+++ P +GEV
Sbjct: 672 VKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALD 1211
LSGG K ++A+ARAVL+N ILLLDE T+ LD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 514 LSGGQKQRIAIARAILKNPKILLLDEATSALD 545
LSGG K ++A+ARA+L+N ILLLDE T+ LD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 36.6 bits (83), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1180 LSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVVAHRLT 1239
LSGGQK ++ +A + P +++LDE T+ LD +S + AL+ +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAE 953
Query: 1240 TIKN-ADIIAVVKNGVIAEQGSH 1261
KN + + VK+G G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 502 GLDTMAGEHGT--QLSGGQKQRIAIARAILKNPKILLLDEATSALDAES 548
GLD H LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 375 IELRDVYFRYPARPEVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEV 434
+++ + F+YP + QI + + A++G +G+GKST+I+++ P +GEV
Sbjct: 666 VKVTNXEFQYPGTSKPQI-TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 514 LSGGQKQRIAIARAILKN--PKILLLDEATSALDAESERIVQDALVKIMT-SRTTVVVAH 570
LSGG+ QRI +A I + +LDE + L R + + L ++ T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 571 RLTTIRNADLIAVV------HQGKIVEKGTHDELIKDPE 603
TI +AD I + H G+IV G +DEL+++ +
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKD 620
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 1180 LSGGQKQRIAIARAVLKN--PKILLLDEATSALDAESERVVQDALERVM-VNRTTVVVAH 1236
LSGG+ QRI +A + + +LDE + L R + + L R+ + T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1237 RLTTIKNADIIAVV------KNGVIAEQGSHDALMKITD---GAYAS 1274
TI++AD I + G I G +D L++ D GAY S
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLS 628
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 508 GEHGTQLSGGQKQRIAIARAILKNP---KILLLDEATSALDAESERIVQDALVKIMTS-R 563
G+ LSGG+ QR+ +A + K + +LDE T+ L + R + + + ++
Sbjct: 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN 917
Query: 564 TTVVVAHRLTTIRNADLI 581
T +V+ H L I+ +D I
Sbjct: 918 TVIVIEHNLDVIKTSDWI 935
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNP---KILLLDEATSALDAESERVVQDALE- 1223
GY +G+ LSGG+ QR+ +A + K + +LDE T+ L + R + + +
Sbjct: 853 GY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911
Query: 1224 RVMVNRTTVVVAHRLTTIKNADII 1247
V T +V+ H L IK +D I
Sbjct: 912 LVDKGNTVIVIEHNLDVIKTSDWI 935
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPK---ILLLDEATSALDAESERIVQDALVKIMTSRT 564
G+ T+LSGG+ QRI +A + ++ + + +LDE T+ L +Q LVK++ +
Sbjct: 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN 784
Query: 565 TVV-VAHRLTTIRNADLI------AVVHQGKIVEKGTHDELIK 600
TV+ V H++ + +D + A G++V +GT E+ +
Sbjct: 785 TVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 1173 VGERGVQLSGGQKQRIAIARAVLKNPK---ILLLDEATSALD-AESERVVQDALERVMVN 1228
+G+ +LSGG+ QRI +A + ++ + + +LDE T+ L A+ ER+ + ++ V
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 1229 RTTVVVAHRLTTIKNADIIAVVKNGVIAEQG 1259
T + V H++ + +D + + G + G
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGG 814
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPK---ILLLDEATSALDAESERVVQDALER 1224
GY +G+ LSGG+ QR+ +A + + + +LDE T+ L + + D L R
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1225 VMVNRTTV-VVAHRLTTIKNADII 1247
++ N TV V+ H L IK AD I
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYI 917
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPK---ILLLDEATSALDAESERIVQDALVKIMTSRT 564
G+ T LSGG+ QR+ +A + + + +LDE T+ L + + D L +++ +
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 565 TV-VVAHRLTTIRNADLIAVV------HQGKIVEKGTHDEL 598
TV V+ H L I+ AD I + G+IV GT +E+
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 502 GLD--TMAGEHGTQLSGGQKQRIAIARAILKNPK--ILLLDEATSALDA-ESERIVQDAL 556
GLD T++ GT LSGG+ QRI +A I + +LDE + L +++R++
Sbjct: 492 GLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Query: 557 VKIMTSRTTVVVAHRLTTIRNADLI------AVVHQGKIVEKGTHDELIKDP 602
T +VV H T AD + A +H G++V GT +E+ DP
Sbjct: 551 SXRDLGNTLIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEVXNDP 602
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTV 1084
+N+ + IP GK V L G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVI 1085
+N+ + IP G VA+ G SGSGKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLV 423
S+ +P GT A+ G SGSGKST+++ V
Sbjct: 644 SVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPK---ILLLDEATSALDAESERVVQDALER 1224
GY +G+ LSGG+ QR+ +A + + + +LDE T+ L + + D L R
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1225 VMVNRTTV-VVAHRLTTIKNADII 1247
++ N TV V+ H L IK AD I
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYI 917
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPK---ILLLDEATSALDAESERIVQDALVKIMTSRT 564
G+ T LSGG+ QR+ +A + + + +LDE T+ L + + D L +++ +
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 565 TV-VVAHRLTTIRNADLIAVV------HQGKIVEKGTHDEL 598
TV V+ H L I+ AD I + G+IV GT +E+
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
Query: 502 GLD--TMAGEHGTQLSGGQKQRIAIARAILKNPK--ILLLDEATSALDA-ESERIVQDAL 556
GLD T++ GT LSGG+ QRI +A I + +LDE + L +++R++ A
Sbjct: 492 GLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI--AT 548
Query: 557 VKIMTS--RTTVVVAHRLTTIRNADLI------AVVHQGKIVEKGTHDELIKDP 602
+K M T +VV H T+ AD + A +H G++V GT +E++ DP
Sbjct: 549 LKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 602
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTV 1084
+N+ + IP GK V L G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVI 1085
+N+ + IP G VA+ G SGSGKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 397 SLHVPSGTTAALVGQSGSGKSTVISLV 423
S+ +P GT A+ G SGSGKST+++ V
Sbjct: 644 SVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1168 GYETNVGERGVQLSGGQKQRIAIARAVLKNPK---ILLLDEATSALDAESERVVQDALER 1224
GY +G+ LSGG+ QR+ +A + + + +LDE T+ L + + D L R
Sbjct: 533 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 1225 VMVNRTTV-VVAHRLTTIKNADII 1247
++ N TV V+ H L IK AD I
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYI 615
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 508 GEHGTQLSGGQKQRIAIARAILKNPK---ILLLDEATSALDAESERIVQDALVKIMTSRT 564
G+ T LSGG+ QR+ +A + + + +LDE T+ L + + D L +++ +
Sbjct: 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597
Query: 565 TV-VVAHRLTTIRNADLIAVV------HQGKIVEKGTHDEL 598
TV V+ H L I+ AD I + G+IV GT +E+
Sbjct: 598 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
Query: 502 GLD--TMAGEHGTQLSGGQKQRIAIARAILKNPK--ILLLDEATSALDA-ESERIVQDAL 556
GLD T++ GT LSGG+ QRI +A I + +LDE + L +++R++ A
Sbjct: 190 GLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI--AT 246
Query: 557 VKIMTS--RTTVVVAHRLTTIRNADLI------AVVHQGKIVEKGTHDELIKDP 602
+K M T +VV H T+ AD + A +H G++V GT +E++ DP
Sbjct: 247 LKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTV 1084
+N+ + IP GK V L G SGSGKS++
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVI 1085
+N+ + IP G VA+ G SGSGKST++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 402 SGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLIDGIDIKKLQLKWIREKIGLVSQEPI 461
+G ++G +GSGK+T++ + P +G + I+G++++K++ +IR L I
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYSTNLPEAYEI 86
Query: 462 LFATSLRENIAYGKENATDQEIRTAIELANAAKFIDKLPKGLDTMAGEHGTQLSGGQKQR 521
+ +I Y E + +E+ A K +++ + +LS GQ
Sbjct: 87 GVTVN---DIVYLYEELKGLDRDLFLEMLKALKLGEEILR-------RKLYKLSAGQSVL 136
Query: 522 IAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTI 575
+ + A+ P+I+ LDE +DA ++ + + + ++V H L +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 1058 FRNLCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHVLLDNIELPKFKLSWLRQQ 1117
N+ L + +G+ V ++G +GSGK+T++ I P SG++ ++ +E+ K + +++R
Sbjct: 21 LENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77
Query: 1118 MGLVSQEPVLFNETIRTN---IAYGKQGGXXXXXXXXXXXXSNAHNFISALPHGYETNVG 1174
L P + + N Y + G + AL G E +
Sbjct: 78 TNL----PEAYEIGVTVNDIVYLYEELKGLDRDLFL---------EMLKALKLGEEI-LR 123
Query: 1175 ERGVQLSGGQKQRIAIARAVLKNPKILLLDEATSALDAESERVVQDALERVMVNRTTVVV 1234
+ +LS GQ + + A+ P+I+ LDE +DA V+ ++ + ++V
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILV 181
Query: 1235 AHRLTTI 1241
H L +
Sbjct: 182 THELDML 188
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 392 IFAGFSLHVPSGTTAALVGQSGSGKSTVISLVERFYDPDAGEVLI-DGIDIKKLQLKWIR 450
+ A L + +A +VG++ SGK+T ++ + F PDA V I D +IK WI
Sbjct: 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWIA 308
Query: 451 E 451
E
Sbjct: 309 E 309
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1061 LCLSIPSGKTVALVGESGSGKSTVIALIERFYDPDSGHV-LLDNIELPKFKLSWL 1114
L L+I + +VGE+ SGK+T + I F PD+ V + D E+ + +W+
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWI 307
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 503 LDTMAGEHGTQLSGGQKQRIAIARAILKNP-KILLLDEATSALDAESERIVQDALVKIMT 561
+D ++G G Q++ R+AIA A++ N + ++LDE T LD + + K+ +
Sbjct: 278 IDNLSG--GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS 335
Query: 562 SRTTVVVAHRLTTIRNADLIAVVHQGKIVEK 592
+++ H AD+I V + V K
Sbjct: 336 IPQMIIITHHRELEDVADVIINVKKDGNVSK 366
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 1180 LSGGQK------QRIAIARAVLKNP-KILLLDEATSALDAESERVVQDALERVMVNRTTV 1232
LSGG++ R+AIA A++ N + ++LDE T LD + + +V +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 1233 VVAHRLTTIKNADIIAVVK 1251
++ H AD+I VK
Sbjct: 341 IITHHRELEDVADVIINVK 359
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 524 IARAILKNPKILLLDEATSALDAESERIVQDALVKIMTSRTTVVVAHRLTTIRNADLIAV 583
I AI +N L + + L E E+ + DA +K + + + H L + + D+
Sbjct: 40 IVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFP 99
Query: 584 VHQGKIVEKGTHDELIKDPEGPY 606
V G + E GT L K + PY
Sbjct: 100 VVHGNLGEDGTLQGLFKLLDKPY 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,621,439
Number of Sequences: 62578
Number of extensions: 1329043
Number of successful extensions: 4348
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3787
Number of HSP's gapped (non-prelim): 359
length of query: 1283
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1173
effective length of database: 8,089,757
effective search space: 9489284961
effective search space used: 9489284961
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)