BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000790
(1283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 21/646 (3%)
Query: 582 RQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPR 639
R+ LP+ + RDE L++ + NQ GETGSGKTTQ+ Q++L D + N V CTQPR
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 640 RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKY 699
RVAAMSVA+RV+EEMD +LG++VGY+IRFE+ T T++KYMTDG+LLRE ++D DL +Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 700 RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 759
I++DEAHER+L+TD+L G+LK+VV RR D K+I+ SATL+A+KF +F P+ +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 760 RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 819
RT+PV Y+ DY+++A++ + IH T GDIL+F+TG+DEIE A + +Q
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 820 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGT-----RKCIVATNIAETSLTVDG 874
L+ L + P+Y LP Q +IFE A E RK +++TNIAETSLT+DG
Sbjct: 330 LVREEG--CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387
Query: 875 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLN 934
I YV+D G+ K KVYNP++ +++L V P+S C+RLYTE A+
Sbjct: 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQK 447
Query: 935 EMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNV 994
E++ PEI R+NL + V FDFMDPP E ++ ++ +L L L++
Sbjct: 448 ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507
Query: 995 GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 1054
G LT LG +FPLDP LA ML+ + C E+LTIV+MLSVP+VF RP + +D
Sbjct: 508 GNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567
Query: 1055 AREKFFVQESDHLTLLYVYQQWKE---HQYR-GDWCEEHYLHVKSLRKAREVRSQLLDIL 1110
A+ F + DH+TLL VY +K ++Y WC +HYL+ +SL A +RSQL ++
Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627
Query: 1111 KTLKIPLTSSGHD----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAI 1165
+ L ++ ++ FD +RKA+ S +F A+ + G YI ++ +HPS+
Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV- 686
Query: 1166 YGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 1211
LG+ E+V+Y+E +LT+K Y++ T+V P+WL E+ P ++ + +
Sbjct: 687 --LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 21/646 (3%)
Query: 582 RQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPR 639
R+ LP+ + RDE L++ + NQ GETGSGKTTQ+ Q++L D + N V CTQPR
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 640 RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKY 699
RVAAMSVA+RV+EEMD +LG++VGY+IRFE+ T T++KYMTDG+LLRE ++D DL +Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 700 RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 759
I++DEAHER+L+TD+L G+LK+VV RR D K+I+ SATL+A+KF +F P+ +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 760 RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 819
RT+PV Y+ DY+++A++ + IH T GDIL+F+TG+DEIE A + +Q
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 820 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGT-----RKCIVATNIAETSLTVDG 874
L+ L + P+Y LP Q +IFE A E RK +++TNIAETSLT+DG
Sbjct: 330 LVREEG--CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387
Query: 875 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLN 934
I YV+D G+ K KVYNP++ +++L V P+S C+RLYTE A+
Sbjct: 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQK 447
Query: 935 EMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNV 994
E++ PEI R+NL + V FDFMDPP E ++ ++ +L L L++
Sbjct: 448 ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507
Query: 995 GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 1054
G LT LG +FPLDP LA ML+ + C E+LTIV+MLSVP+VF RP + +D
Sbjct: 508 GNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567
Query: 1055 AREKFFVQESDHLTLLYVYQQWKE---HQYR-GDWCEEHYLHVKSLRKAREVRSQLLDIL 1110
A+ F + DH+TLL VY +K ++Y WC +HYL+ +SL A +RSQL ++
Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627
Query: 1111 KTLKIPLTSSGHD----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAI 1165
+ L ++ ++ FD +RKA+ S +F A+ + G YI ++ +HPS+
Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV- 686
Query: 1166 YGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 1211
LG+ E+V+Y+E +LT+K Y++ T+V P+WL E+ P ++ + +
Sbjct: 687 --LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 159/240 (66%), Gaps = 2/240 (0%)
Query: 974 PQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIV 1033
P E ++ +M QL+ LGAL++ G LT LG +M EFPL+P L KML+M LGC +E+LTIV
Sbjct: 16 PMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIV 75
Query: 1034 SMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHV 1093
SMLSV +VF+RPKD+ +D + KF E DHLTLL VY WK +++ WC E+++
Sbjct: 76 SMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQA 135
Query: 1094 KSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRN 1153
+SLR+A+++R Q+L I+ K+ + S G V+KAICS +F NAA+ Y +
Sbjct: 136 RSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLID 195
Query: 1154 GMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSD 1213
++HPSSA++ PE+VVYHEL+LTTKEYM+ T ++P+WL E P FF V + D
Sbjct: 196 QQVVYIHPSSALF--NRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVD 253
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 119 bits (299), Expect = 8e-27, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 7/187 (3%)
Query: 576 KTLAEQRQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLEDGYTTNGIVGC 635
+ + ++R+ LP+ E+L+ I +N G TG GKTTQ+ Q++L+D + C
Sbjct: 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAEC 110
Query: 636 ----TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG-PSTLIKYMTDGVLLRET 690
TQPRR++A+SVA+RV+ E E G GY++RFE + P I + T GVLLR+
Sbjct: 111 NIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL 170
Query: 691 LKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFG 750
++ + +++DE HER ++TD L +L+ VV + ++++ SAT++ F ++F
Sbjct: 171 --EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFF 228
Query: 751 SVPIFHI 757
+ PI +
Sbjct: 229 NCPIIEV 235
>pdb|2Z83|A Chain A, Crystal Structure Of Catalytic Domain Of Japanese
Encephalitis Virus Ns3 HelicaseNUCLEOSIDE TRIPHOSPHATASE
At A Resolution 1.8
Length = 459
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 596 QVIRENQXXXXXGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 655
++R+ Q GSGKT ++ +++D Q R A ++ + V+ EM
Sbjct: 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKD--------AIQQRLRTAVLAPTRVVAAEMA 67
Query: 656 TELGDKVGYAIRFEDVT-----GPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH 708
L G +R++ + ++ M L + + + Y + VMDEAH
Sbjct: 68 EAL---RGLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAH 122
>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
Length = 168
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 632 IVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETL 691
I+G QP + V K+++EE+D E+ +G A + + P T + + +++ ++L
Sbjct: 5 IIGRFQPFHKGHLEVIKKIAEEVD-EIIIGIGSAQKSHTLENPFTAGERI---LMITQSL 60
Query: 692 KDSDLDKYRVIVMD 705
KD DL Y + + D
Sbjct: 61 KDYDLTYYPIPIKD 74
>pdb|1GFF|2 Chain 2, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 177
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 636 TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP-STLIKYMTDGVLLRETLKDS 694
T P A+S+A +S D + +AIRFE G T + + D V ET +
Sbjct: 65 TNPTNHHALSIAGSLSNVP----ADMIAFAIRFEVADGVVPTAVPALYD-VYPIETFNNG 119
Query: 695 DLDKYRVIVMDEAHERSLSTDVLFGIL 721
++ V ++H R++ DV GI+
Sbjct: 120 KAISFKDAVTIDSHPRTVGNDVYAGIM 146
>pdb|3F72|A Chain A, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|B Chain B, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|C Chain C, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|D Chain D, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|E Chain E, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|F Chain F, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
Length = 122
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 487 TSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVG 546
T D++ +S+ A+ E R K T + EL + NILGV T +
Sbjct: 26 TVDISGVSQILKAIADENRAKITYALCQDE--ELCVCDIANILGV--TIANASHHLRTLY 81
Query: 547 EQGEIDFREDAKFSQHMKKGEAV 569
+QG ++FR++ K + + GEA+
Sbjct: 82 KQGVVNFRKEGKLALYSLGGEAI 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,619,440
Number of Sequences: 62578
Number of extensions: 1458424
Number of successful extensions: 3733
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3713
Number of HSP's gapped (non-prelim): 16
length of query: 1283
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1173
effective length of database: 8,089,757
effective search space: 9489284961
effective search space used: 9489284961
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)