Query 000790
Match_columns 1283
No_of_seqs 792 out of 3420
Neff 6.1
Searched_HMMs 46136
Date Mon Apr 1 23:31:38 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0924 mRNA splicing factor A 100.0 7E-206 1E-210 1761.2 68.6 874 362-1281 169-1042(1042)
2 KOG0923 mRNA splicing factor A 100.0 4E-153 9E-158 1324.2 52.2 634 574-1213 253-888 (902)
3 KOG0922 DEAH-box RNA helicase 100.0 1E-150 2E-155 1325.9 55.4 630 574-1212 39-671 (674)
4 KOG0925 mRNA splicing factor A 100.0 3E-139 6E-144 1176.9 51.1 632 572-1215 33-674 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 9E-118 2E-122 1134.7 62.4 614 579-1209 67-698 (1294)
6 COG1643 HrpA HrpA-like helicas 100.0 4E-115 9E-120 1079.3 55.2 626 574-1211 38-717 (845)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6E-114 1E-118 1103.7 60.8 616 578-1210 59-689 (1283)
8 KOG0926 DEAH-box RNA helicase 100.0 2E-111 4E-116 989.6 43.9 636 572-1210 242-1025(1172)
9 KOG0920 ATP-dependent RNA heli 100.0 6E-107 1E-111 1000.9 47.5 636 572-1213 159-854 (924)
10 PRK11664 ATP-dependent RNA hel 100.0 9.1E-92 2E-96 885.5 57.5 566 584-1211 3-574 (812)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.8E-91 1.5E-95 875.8 57.1 573 585-1210 1-580 (819)
12 KOG0921 Dosage compensation co 100.0 1E-62 2.2E-67 584.0 24.6 622 575-1206 367-1071(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 3.5E-57 7.5E-62 559.2 38.8 391 589-1022 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 4.7E-42 1E-46 432.7 44.8 425 585-1024 21-494 (674)
15 PRK02362 ski2-like helicase; P 100.0 1.3E-39 2.8E-44 413.8 46.1 518 577-1111 14-622 (737)
16 PRK00254 ski2-like helicase; P 100.0 2.9E-37 6.3E-42 391.4 44.7 518 576-1112 13-614 (720)
17 KOG0330 ATP-dependent RNA heli 100.0 3.7E-39 8E-44 359.8 22.5 309 586-931 83-408 (476)
18 KOG0331 ATP-dependent RNA heli 100.0 2.1E-38 4.6E-43 374.7 28.7 324 576-932 103-450 (519)
19 PTZ00110 helicase; Provisional 100.0 1.4E-37 3E-42 382.3 32.1 322 576-932 142-486 (545)
20 KOG0333 U5 snRNP-like RNA heli 100.0 6.3E-38 1.4E-42 359.4 25.9 367 527-931 209-625 (673)
21 PRK11776 ATP-dependent RNA hel 100.0 2.9E-37 6.2E-42 373.3 33.0 318 579-932 19-351 (460)
22 PRK04837 ATP-dependent RNA hel 100.0 3E-37 6.5E-42 369.3 29.8 318 577-932 21-364 (423)
23 PRK11192 ATP-dependent RNA hel 100.0 1.3E-36 2.7E-41 365.0 32.5 321 576-932 13-354 (434)
24 PRK10590 ATP-dependent RNA hel 100.0 1.1E-36 2.3E-41 367.9 31.8 318 578-932 15-354 (456)
25 PRK04537 ATP-dependent RNA hel 100.0 1.3E-36 2.8E-41 375.1 31.2 315 579-931 24-365 (572)
26 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-36 2.7E-41 372.3 30.6 322 576-932 133-477 (518)
27 COG0513 SrmB Superfamily II DN 100.0 2.1E-36 4.6E-41 368.8 31.3 319 576-930 41-380 (513)
28 PRK11634 ATP-dependent RNA hel 100.0 2.9E-36 6.4E-41 374.4 32.9 320 577-932 19-354 (629)
29 PRK01297 ATP-dependent RNA hel 100.0 7.1E-36 1.5E-40 362.5 31.6 320 575-932 98-444 (475)
30 PTZ00424 helicase 45; Provisio 100.0 2.7E-35 5.8E-40 349.3 30.2 314 583-932 47-376 (401)
31 COG1204 Superfamily II helicas 100.0 7.5E-34 1.6E-38 356.2 36.4 439 587-1042 32-547 (766)
32 TIGR03817 DECH_helic helicase/ 100.0 3E-34 6.5E-39 362.7 33.1 327 575-929 25-385 (742)
33 KOG0345 ATP-dependent RNA heli 100.0 1.5E-34 3.2E-39 329.1 27.1 337 576-947 18-383 (567)
34 KOG0343 RNA Helicase [RNA proc 100.0 5.7E-35 1.2E-39 336.1 20.6 324 573-931 78-423 (758)
35 KOG0342 ATP-dependent RNA heli 100.0 6E-34 1.3E-38 326.5 26.2 320 577-931 95-438 (543)
36 COG1202 Superfamily II helicas 100.0 1.3E-33 2.9E-38 325.9 28.4 448 572-1056 202-699 (830)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.5E-33 7.6E-38 338.5 32.5 302 587-932 12-335 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 3.6E-33 7.9E-38 351.5 30.8 304 586-932 460-789 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 1E-32 2.2E-37 343.4 33.2 302 586-932 25-345 (607)
40 KOG0338 ATP-dependent RNA heli 100.0 1.5E-33 3.3E-38 322.2 21.2 315 583-932 200-535 (691)
41 KOG0339 ATP-dependent RNA heli 100.0 1.1E-32 2.4E-37 314.5 25.6 317 580-932 239-577 (731)
42 KOG0340 ATP-dependent RNA heli 100.0 1.1E-32 2.3E-37 305.3 24.6 308 587-932 30-363 (442)
43 KOG0348 ATP-dependent RNA heli 100.0 2.4E-32 5.2E-37 314.0 25.2 334 584-936 157-562 (708)
44 PRK13767 ATP-dependent helicas 100.0 3.8E-32 8.3E-37 349.6 29.9 312 587-927 33-397 (876)
45 TIGR01389 recQ ATP-dependent D 100.0 1E-31 2.2E-36 334.4 29.6 301 587-932 14-333 (591)
46 KOG0334 RNA helicase [RNA proc 100.0 6.7E-32 1.5E-36 332.7 20.3 336 562-932 363-722 (997)
47 KOG0336 ATP-dependent RNA heli 100.0 9.6E-32 2.1E-36 300.3 19.1 314 584-932 240-574 (629)
48 KOG0328 Predicted ATP-dependen 100.0 5.6E-31 1.2E-35 283.7 21.9 310 587-932 50-375 (400)
49 KOG0335 ATP-dependent RNA heli 100.0 1.5E-31 3.2E-36 312.1 18.9 312 584-928 94-442 (482)
50 TIGR00580 mfd transcription-re 100.0 9.3E-30 2E-34 325.2 34.1 300 585-930 450-770 (926)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.9E-30 1.3E-34 319.2 30.1 341 587-967 16-428 (844)
52 PRK10917 ATP-dependent DNA hel 100.0 2.7E-29 5.9E-34 316.1 34.0 300 584-928 259-587 (681)
53 PRK09751 putative ATP-dependen 100.0 3.9E-30 8.5E-35 336.2 27.2 297 606-924 1-379 (1490)
54 KOG0326 ATP-dependent RNA heli 100.0 7.6E-31 1.6E-35 286.4 16.0 307 588-931 109-430 (459)
55 PRK10689 transcription-repair 100.0 3.2E-29 6.9E-34 326.4 33.5 300 584-929 598-918 (1147)
56 KOG0332 ATP-dependent RNA heli 100.0 4.2E-30 9.2E-35 285.9 21.0 313 588-930 114-443 (477)
57 COG1201 Lhr Lhr-like helicases 100.0 2.4E-29 5.3E-34 312.2 29.5 369 578-987 15-438 (814)
58 KOG0350 DEAD-box ATP-dependent 100.0 4.9E-30 1.1E-34 293.8 20.1 326 577-931 150-541 (620)
59 KOG0952 DNA/RNA helicase MER3/ 100.0 1.5E-28 3.2E-33 300.1 34.0 440 589-1038 113-640 (1230)
60 TIGR01587 cas3_core CRISPR-ass 100.0 1.5E-29 3.2E-34 296.2 24.2 291 603-931 1-337 (358)
61 TIGR00643 recG ATP-dependent D 100.0 7.3E-29 1.6E-33 310.2 31.3 301 586-928 235-564 (630)
62 KOG0347 RNA helicase [RNA proc 100.0 3.7E-30 7.9E-35 296.8 15.4 329 569-932 186-572 (731)
63 KOG0341 DEAD-box protein abstr 100.0 9.2E-30 2E-34 282.9 11.5 321 577-932 183-530 (610)
64 KOG0346 RNA helicase [RNA proc 100.0 1.7E-28 3.6E-33 277.6 21.3 313 583-931 38-411 (569)
65 COG0514 RecQ Superfamily II DN 100.0 2.4E-27 5.2E-32 285.7 26.3 301 589-932 20-339 (590)
66 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-26 3.4E-31 267.9 29.5 312 588-930 17-481 (542)
67 TIGR03158 cas3_cyano CRISPR-as 100.0 1.5E-26 3.2E-31 271.4 29.0 284 590-916 1-357 (357)
68 KOG0344 ATP-dependent RNA heli 100.0 1E-27 2.3E-32 281.2 18.2 309 588-932 160-497 (593)
69 KOG4284 DEAD box protein [Tran 99.9 6.5E-27 1.4E-31 273.0 20.1 316 584-931 45-380 (980)
70 COG1205 Distinct helicase fami 99.9 6.2E-26 1.3E-30 288.6 28.7 328 576-928 60-420 (851)
71 KOG0354 DEAD-box like helicase 99.9 1.5E-25 3.2E-30 272.7 28.8 314 583-929 59-528 (746)
72 PRK13766 Hef nuclease; Provisi 99.9 2.4E-25 5.2E-30 285.6 31.9 313 585-932 14-481 (773)
73 PHA02558 uvsW UvsW helicase; P 99.9 3.3E-25 7.1E-30 270.9 30.2 297 584-922 112-443 (501)
74 KOG0951 RNA helicase BRR2, DEA 99.9 1.7E-24 3.8E-29 266.7 29.7 451 587-1051 310-858 (1674)
75 PRK09401 reverse gyrase; Revie 99.9 5.9E-25 1.3E-29 287.2 26.1 298 578-916 72-429 (1176)
76 KOG0327 Translation initiation 99.9 8.1E-25 1.8E-29 246.6 18.1 306 588-932 50-372 (397)
77 TIGR03714 secA2 accessory Sec 99.9 4.1E-23 8.9E-28 256.1 30.1 311 581-932 63-539 (762)
78 PRK14701 reverse gyrase; Provi 99.9 1.4E-23 2.9E-28 279.7 27.1 313 586-932 79-458 (1638)
79 TIGR00603 rad25 DNA repair hel 99.9 5.7E-23 1.2E-27 254.8 29.3 300 584-932 253-609 (732)
80 PRK12898 secA preprotein trans 99.9 1.2E-22 2.7E-27 249.3 31.0 319 573-931 90-587 (656)
81 KOG0947 Cytoplasmic exosomal R 99.9 1.7E-23 3.8E-28 253.2 22.7 323 585-930 296-723 (1248)
82 COG4581 Superfamily II RNA hel 99.9 2.8E-23 6.1E-28 261.4 24.7 331 583-929 116-536 (1041)
83 KOG0352 ATP-dependent DNA heli 99.9 1.2E-23 2.6E-28 237.0 19.0 304 589-932 23-364 (641)
84 PRK05580 primosome assembly pr 99.9 6.9E-23 1.5E-27 257.7 26.2 316 585-925 143-544 (679)
85 KOG0948 Nuclear exosomal RNA h 99.9 6.5E-24 1.4E-28 251.6 15.6 322 586-930 129-539 (1041)
86 TIGR01054 rgy reverse gyrase. 99.9 9E-23 1.9E-27 267.2 26.9 281 579-888 71-412 (1171)
87 PRK09200 preprotein translocas 99.9 2.5E-22 5.4E-27 251.2 29.4 308 584-932 76-543 (790)
88 KOG0337 ATP-dependent RNA heli 99.9 4.9E-24 1.1E-28 240.8 11.9 308 588-931 45-369 (529)
89 PRK09694 helicase Cas3; Provis 99.9 5.9E-22 1.3E-26 251.8 29.9 299 586-919 286-663 (878)
90 KOG0351 ATP-dependent DNA heli 99.9 4.8E-23 1.1E-27 260.9 19.7 305 589-932 267-594 (941)
91 TIGR00595 priA primosomal prot 99.9 8.9E-23 1.9E-27 248.6 20.0 296 605-925 1-376 (505)
92 TIGR00963 secA preprotein tran 99.9 1.9E-21 4.2E-26 239.9 29.9 311 583-932 51-519 (745)
93 COG4098 comFA Superfamily II D 99.9 4.1E-21 8.9E-26 213.1 27.8 294 592-929 107-416 (441)
94 COG1200 RecG RecG-like helicas 99.9 1.8E-20 3.9E-25 225.9 27.9 309 581-930 255-591 (677)
95 KOG0950 DNA polymerase theta/e 99.9 5E-21 1.1E-25 234.4 22.5 329 584-931 221-612 (1008)
96 COG1061 SSL2 DNA or RNA helica 99.9 3.3E-20 7.1E-25 223.4 27.3 290 582-919 32-377 (442)
97 PRK11448 hsdR type I restricti 99.9 1.3E-19 2.9E-24 236.2 34.8 315 585-928 412-813 (1123)
98 COG1197 Mfd Transcription-repa 99.8 1.8E-19 3.8E-24 227.4 27.5 297 589-931 597-914 (1139)
99 KOG0353 ATP-dependent DNA heli 99.8 3.9E-19 8.5E-24 197.7 24.1 314 576-931 83-468 (695)
100 KOG0921 Dosage compensation co 99.8 7.9E-22 1.7E-26 237.0 -2.9 448 579-1042 399-895 (1282)
101 PRK13104 secA preprotein trans 99.8 4.4E-18 9.6E-23 212.9 27.0 127 581-709 75-213 (896)
102 PRK04914 ATP-dependent helicas 99.8 6E-18 1.3E-22 216.7 27.4 311 586-930 152-605 (956)
103 COG1203 CRISPR-associated heli 99.8 7.7E-18 1.7E-22 214.1 24.0 304 587-927 196-547 (733)
104 PF07717 OB_NTP_bind: Oligonuc 99.8 1.2E-19 2.6E-24 179.1 4.2 101 1104-1206 1-114 (114)
105 PRK12906 secA preprotein trans 99.8 2.6E-17 5.6E-22 205.3 25.2 108 791-931 438-554 (796)
106 PRK12904 preprotein translocas 99.8 5.3E-17 1.1E-21 203.2 24.4 317 582-930 75-573 (830)
107 KOG0329 ATP-dependent RNA heli 99.7 3.1E-17 6.6E-22 175.8 13.6 273 586-931 64-356 (387)
108 KOG0949 Predicted helicase, DE 99.7 3.1E-16 6.7E-21 191.2 21.9 162 585-750 510-682 (1330)
109 PRK13107 preprotein translocas 99.7 1.1E-15 2.3E-20 191.2 24.9 126 582-709 76-213 (908)
110 PF04408 HA2: Helicase associa 99.7 7.9E-17 1.7E-21 156.4 9.7 91 980-1070 1-102 (102)
111 PRK12899 secA preprotein trans 99.7 6E-15 1.3E-19 184.8 27.0 121 587-709 93-226 (970)
112 PF00270 DEAD: DEAD/DEAH box h 99.7 3.9E-16 8.5E-21 162.5 13.7 156 588-746 1-167 (169)
113 KOG0349 Putative DEAD-box RNA 99.7 8.2E-16 1.8E-20 174.1 14.8 269 630-928 286-613 (725)
114 cd00268 DEADc DEAD-box helicas 99.7 2.3E-15 4.9E-20 162.3 17.6 169 584-754 19-200 (203)
115 KOG0953 Mitochondrial RNA heli 99.6 5.3E-15 1.2E-19 172.9 20.7 274 601-930 191-477 (700)
116 COG1198 PriA Primosomal protei 99.6 6.7E-15 1.5E-19 183.2 22.3 315 585-924 197-597 (730)
117 smart00847 HA2 Helicase associ 99.6 3.2E-15 7E-20 141.9 9.2 90 980-1070 1-92 (92)
118 TIGR00348 hsdR type I site-spe 99.6 1.2E-13 2.6E-18 174.5 24.9 284 601-921 263-638 (667)
119 COG4096 HsdR Type I site-speci 99.6 3.1E-13 6.7E-18 165.6 24.8 330 588-957 167-574 (875)
120 TIGR01407 dinG_rel DnaQ family 99.5 1.9E-12 4.1E-17 168.2 30.7 183 731-926 596-811 (850)
121 COG1110 Reverse gyrase [DNA re 99.5 1.8E-12 3.9E-17 160.8 27.0 277 578-887 74-419 (1187)
122 PLN03142 Probable chromatin-re 99.5 1.6E-12 3.4E-17 168.0 26.1 308 587-934 170-603 (1033)
123 smart00487 DEXDc DEAD-like hel 99.5 7.9E-13 1.7E-17 138.8 16.5 164 585-752 7-184 (201)
124 KOG4150 Predicted ATP-dependen 99.4 6.6E-13 1.4E-17 154.6 14.5 320 575-920 275-629 (1034)
125 cd00046 DEXDc DEAD-like helica 99.4 1.4E-12 3.1E-17 128.8 14.1 136 602-740 1-144 (144)
126 TIGR00631 uvrb excinuclease AB 99.4 2.1E-12 4.6E-17 162.0 17.8 114 791-930 440-553 (655)
127 PRK12326 preprotein translocas 99.4 1.7E-11 3.8E-16 150.9 25.1 130 575-708 67-208 (764)
128 PRK07246 bifunctional ATP-depe 99.4 2.1E-10 4.5E-15 147.9 32.2 135 774-926 630-780 (820)
129 PRK05298 excinuclease ABC subu 99.4 7.5E-12 1.6E-16 157.8 17.9 112 792-929 445-556 (652)
130 cd00079 HELICc Helicase superf 99.4 6.2E-12 1.3E-16 124.9 13.5 104 792-926 27-131 (131)
131 PF07652 Flavi_DEAD: Flaviviru 99.4 2.7E-12 6E-17 130.4 11.0 134 600-741 3-137 (148)
132 TIGR02562 cas3_yersinia CRISPR 99.4 7E-11 1.5E-15 149.7 25.6 96 797-920 760-881 (1110)
133 KOG0951 RNA helicase BRR2, DEA 99.3 7.4E-11 1.6E-15 148.0 22.9 329 590-942 1147-1508(1674)
134 COG0556 UvrB Helicase subunit 99.3 3.2E-10 6.9E-15 133.4 26.8 163 731-926 387-553 (663)
135 PRK13103 secA preprotein trans 99.3 5.2E-11 1.1E-15 149.9 21.6 127 581-709 75-213 (913)
136 PRK12900 secA preprotein trans 99.3 3.3E-11 7.1E-16 152.1 17.1 163 731-932 534-713 (1025)
137 PF00271 Helicase_C: Helicase 99.3 1.1E-11 2.4E-16 113.7 7.6 73 829-919 6-78 (78)
138 PF04851 ResIII: Type III rest 99.3 1.8E-11 3.9E-16 128.6 10.1 145 585-740 2-182 (184)
139 CHL00122 secA preprotein trans 99.2 3.4E-10 7.5E-15 142.1 21.3 125 582-708 70-206 (870)
140 PRK12903 secA preprotein trans 99.2 1.5E-09 3.3E-14 135.7 24.1 126 582-709 72-209 (925)
141 PRK08074 bifunctional ATP-depe 99.1 1.2E-08 2.7E-13 133.7 31.0 141 774-926 734-890 (928)
142 PRK12902 secA preprotein trans 99.1 9.3E-09 2E-13 129.2 26.1 127 581-709 78-216 (939)
143 PRK14873 primosome assembly pr 99.1 2.1E-09 4.5E-14 135.2 19.4 133 607-749 166-312 (665)
144 KOG1123 RNA polymerase II tran 99.1 3.4E-10 7.4E-15 131.4 10.8 299 587-931 303-654 (776)
145 smart00490 HELICc helicase sup 99.1 3.4E-10 7.4E-15 103.0 8.1 72 830-919 11-82 (82)
146 TIGR03117 cas_csf4 CRISPR-asso 99.0 1.7E-07 3.7E-12 116.9 32.5 60 592-651 7-67 (636)
147 PF02399 Herpes_ori_bp: Origin 99.0 3.8E-08 8.3E-13 122.8 24.2 291 600-930 48-388 (824)
148 KOG0387 Transcription-coupled 99.0 1.8E-07 3.9E-12 114.7 28.7 200 793-1041 546-747 (923)
149 KOG0385 Chromatin remodeling c 98.9 7.9E-08 1.7E-12 117.2 23.6 115 792-934 486-603 (971)
150 PRK11747 dinG ATP-dependent DN 98.8 1.8E-06 3.8E-11 110.5 32.1 135 774-926 517-671 (697)
151 KOG0390 DNA repair protein, SN 98.8 2.8E-07 6.2E-12 115.5 22.2 85 830-932 619-709 (776)
152 TIGR00604 rad3 DNA repair heli 98.8 9.8E-07 2.1E-11 113.2 26.7 184 732-926 443-671 (705)
153 COG4889 Predicted helicase [Ge 98.7 3.7E-08 8E-13 120.4 11.3 313 587-924 162-578 (1518)
154 COG1199 DinG Rad3-related DNA 98.7 2.6E-06 5.7E-11 108.6 28.3 136 775-926 462-614 (654)
155 PRK12901 secA preprotein trans 98.7 7.7E-07 1.7E-11 113.4 20.9 120 585-708 168-300 (1112)
156 KOG0384 Chromodomain-helicase 98.6 3.4E-06 7.4E-11 107.7 21.7 137 791-958 697-836 (1373)
157 KOG1000 Chromatin remodeling p 98.6 1.1E-05 2.5E-10 94.8 24.1 76 792-880 491-568 (689)
158 PF06862 DUF1253: Protein of u 98.0 0.00096 2.1E-08 80.5 25.5 230 675-932 131-417 (442)
159 PF00448 SRP54: SRP54-type pro 98.0 2.4E-05 5.2E-10 85.2 10.4 123 602-742 2-127 (196)
160 KOG0392 SNF2 family DNA-depend 98.0 0.00053 1.2E-08 88.2 23.0 117 793-934 1340-1458(1549)
161 PF13604 AAA_30: AAA domain; P 98.0 2E-05 4.4E-10 85.7 9.2 122 588-740 3-131 (196)
162 PF13401 AAA_22: AAA domain; P 98.0 5.7E-06 1.2E-10 82.8 4.2 119 599-739 2-125 (131)
163 COG0653 SecA Preprotein transl 98.0 0.00012 2.7E-09 92.7 16.5 125 582-708 74-210 (822)
164 PF00176 SNF2_N: SNF2 family N 98.0 2.9E-05 6.3E-10 88.4 10.2 132 600-740 24-172 (299)
165 COG0610 Type I site-specific r 97.9 0.00046 9.9E-09 91.3 21.6 127 602-740 274-413 (962)
166 COG1419 FlhF Flagellar GTP-bin 97.9 0.00024 5.2E-09 84.0 16.7 128 599-749 201-332 (407)
167 KOG0952 DNA/RNA helicase MER3/ 97.9 8.7E-06 1.9E-10 102.8 3.9 230 583-813 909-1173(1230)
168 PRK12723 flagellar biosynthesi 97.8 0.00015 3.2E-09 86.6 13.2 127 601-750 174-307 (388)
169 PRK11889 flhF flagellar biosyn 97.8 0.00027 5.9E-09 83.7 14.0 130 601-751 241-376 (436)
170 TIGR02768 TraA_Ti Ti-type conj 97.8 0.0036 7.8E-08 81.1 25.2 123 584-737 350-474 (744)
171 KOG0389 SNF2 family DNA-depend 97.7 0.0026 5.6E-08 79.3 21.7 91 829-934 800-892 (941)
172 PRK13889 conjugal transfer rel 97.7 0.0052 1.1E-07 81.1 25.1 127 583-740 343-471 (988)
173 TIGR01447 recD exodeoxyribonuc 97.7 0.00026 5.7E-09 88.8 12.8 136 589-738 148-294 (586)
174 PRK14722 flhF flagellar biosyn 97.7 0.0003 6.4E-09 83.6 12.3 124 598-744 134-261 (374)
175 PRK05703 flhF flagellar biosyn 97.7 0.00053 1.2E-08 83.1 14.7 130 599-751 219-356 (424)
176 PF02562 PhoH: PhoH-like prote 97.7 0.00021 4.6E-09 78.2 10.1 55 586-640 4-59 (205)
177 TIGR01448 recD_rel helicase, p 97.6 0.00039 8.4E-09 89.6 13.3 129 580-740 317-453 (720)
178 PRK10875 recD exonuclease V su 97.6 0.00029 6.4E-09 88.7 11.9 137 589-739 155-301 (615)
179 PRK10536 hypothetical protein; 97.6 0.00016 3.4E-09 81.4 8.1 57 585-641 58-115 (262)
180 PF09848 DUF2075: Uncharacteri 97.6 0.00021 4.6E-09 84.6 9.6 94 602-713 2-97 (352)
181 cd00009 AAA The AAA+ (ATPases 97.6 0.00083 1.8E-08 66.8 12.2 46 592-638 8-55 (151)
182 PF13245 AAA_19: Part of AAA d 97.5 0.00022 4.9E-09 65.9 7.2 54 597-650 6-62 (76)
183 PRK12724 flagellar biosynthesi 97.5 0.001 2.3E-08 79.7 13.9 129 600-752 222-359 (432)
184 KOG1803 DNA helicase [Replicat 97.5 0.0002 4.4E-09 87.0 7.8 63 588-651 187-250 (649)
185 PRK12726 flagellar biosynthesi 97.5 0.0013 2.8E-08 77.8 14.0 130 599-749 204-336 (407)
186 PRK06526 transposase; Provisio 97.4 0.00043 9.4E-09 78.4 9.3 40 596-636 93-132 (254)
187 PRK13826 Dtr system oriT relax 97.3 0.032 7E-07 74.3 25.7 126 584-740 379-506 (1102)
188 KOG2340 Uncharacterized conser 97.3 0.0024 5.2E-08 76.5 13.7 325 579-932 209-670 (698)
189 KOG0386 Chromatin remodeling c 97.3 0.00068 1.5E-08 86.0 9.3 88 830-935 750-843 (1157)
190 TIGR02760 TraI_TIGR conjugativ 97.3 0.057 1.2E-06 76.6 29.0 247 584-855 427-685 (1960)
191 PRK14974 cell division protein 97.3 0.0019 4.2E-08 75.9 12.1 121 601-740 140-264 (336)
192 smart00382 AAA ATPases associa 97.2 0.00099 2.2E-08 65.4 8.2 39 601-640 2-40 (148)
193 PF13086 AAA_11: AAA domain; P 97.2 0.00078 1.7E-08 73.4 8.0 65 588-652 3-75 (236)
194 PRK15483 type III restriction- 97.2 0.0027 5.8E-08 82.6 13.5 136 601-741 59-239 (986)
195 PRK14723 flhF flagellar biosyn 97.2 0.0028 6.2E-08 81.0 13.4 124 600-746 184-311 (767)
196 PRK08181 transposase; Validate 97.2 0.0047 1E-07 70.6 13.8 115 597-751 102-219 (269)
197 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0017 3.8E-08 73.8 10.2 129 577-709 68-208 (266)
198 PRK12727 flagellar biosynthesi 97.1 0.0027 5.8E-08 78.0 12.1 126 597-745 346-474 (559)
199 PRK14721 flhF flagellar biosyn 97.1 0.004 8.7E-08 75.2 12.8 130 599-751 189-325 (420)
200 PF12340 DUF3638: Protein of u 97.1 0.0032 6.9E-08 69.9 11.0 129 578-709 15-183 (229)
201 PRK06995 flhF flagellar biosyn 97.1 0.0047 1E-07 75.7 13.1 129 600-751 255-390 (484)
202 PRK04296 thymidine kinase; Pro 97.1 0.0039 8.5E-08 67.6 11.2 111 601-739 2-115 (190)
203 PF05729 NACHT: NACHT domain 97.0 0.0028 6.2E-08 65.4 9.1 59 701-759 84-149 (166)
204 smart00488 DEXDc2 DEAD-like he 97.0 0.0017 3.8E-08 74.9 8.0 65 586-650 8-81 (289)
205 smart00489 DEXDc3 DEAD-like he 97.0 0.0017 3.8E-08 74.9 8.0 65 586-650 8-81 (289)
206 PRK10416 signal recognition pa 96.9 0.0096 2.1E-07 69.8 13.4 125 600-742 113-246 (318)
207 PRK06731 flhF flagellar biosyn 96.9 0.012 2.5E-07 67.4 13.7 130 600-750 74-209 (270)
208 PF05970 PIF1: PIF1-like helic 96.8 0.0034 7.5E-08 74.8 9.0 57 589-646 4-66 (364)
209 PF13173 AAA_14: AAA domain 96.8 0.0065 1.4E-07 61.4 9.6 27 600-626 1-27 (128)
210 PHA03333 putative ATPase subun 96.8 0.033 7.1E-07 70.1 17.2 141 599-751 185-343 (752)
211 PRK07952 DNA replication prote 96.8 0.017 3.8E-07 65.2 13.5 115 602-751 100-215 (244)
212 PF00580 UvrD-helicase: UvrD/R 96.6 0.0032 6.9E-08 72.1 6.8 67 588-656 2-71 (315)
213 TIGR03015 pepcterm_ATPase puta 96.6 0.0062 1.3E-07 68.9 8.9 24 601-624 43-66 (269)
214 TIGR00064 ftsY signal recognit 96.6 0.02 4.4E-07 65.6 12.9 124 600-742 71-204 (272)
215 KOG4439 RNA polymerase II tran 96.6 0.21 4.6E-06 62.4 21.8 89 829-932 769-860 (901)
216 PRK07003 DNA polymerase III su 96.5 0.0078 1.7E-07 76.5 9.7 49 687-737 108-156 (830)
217 PF13872 AAA_34: P-loop contai 96.5 0.022 4.8E-07 65.6 12.5 140 601-740 62-220 (303)
218 PRK08727 hypothetical protein; 96.5 0.015 3.3E-07 65.0 10.9 35 601-636 41-75 (233)
219 PRK09183 transposase/IS protei 96.5 0.031 6.6E-07 63.7 13.2 38 598-636 99-136 (259)
220 COG1444 Predicted P-loop ATPas 96.5 0.033 7.1E-07 71.1 14.4 121 602-741 232-357 (758)
221 PRK06893 DNA replication initi 96.5 0.021 4.6E-07 63.7 11.6 47 696-744 89-138 (229)
222 TIGR00596 rad1 DNA repair prot 96.4 0.072 1.6E-06 69.4 17.7 66 675-741 7-73 (814)
223 PRK06835 DNA replication prote 96.4 0.05 1.1E-06 64.1 14.6 36 600-636 182-217 (329)
224 TIGR00376 DNA helicase, putati 96.3 0.0085 1.8E-07 76.4 8.3 66 586-652 157-223 (637)
225 KOG1802 RNA helicase nonsense 96.3 0.0057 1.2E-07 75.0 6.2 66 587-652 411-476 (935)
226 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.042 9.2E-07 60.4 12.6 25 599-623 36-60 (226)
227 TIGR02881 spore_V_K stage V sp 96.2 0.022 4.8E-07 64.7 10.4 20 601-620 42-61 (261)
228 cd01120 RecA-like_NTPases RecA 96.2 0.021 4.5E-07 58.5 9.3 35 603-638 1-35 (165)
229 PRK08903 DnaA regulatory inact 96.2 0.031 6.7E-07 61.9 11.2 36 600-636 41-76 (227)
230 TIGR01425 SRP54_euk signal rec 96.2 0.028 6E-07 68.2 11.4 130 602-749 101-235 (429)
231 TIGR00959 ffh signal recogniti 96.2 0.033 7.1E-07 67.8 12.0 122 602-740 100-224 (428)
232 PRK00771 signal recognition pa 96.1 0.035 7.6E-07 67.7 11.9 120 601-740 95-217 (437)
233 PRK07764 DNA polymerase III su 96.1 0.017 3.7E-07 75.3 9.7 44 692-737 114-157 (824)
234 PF01695 IstB_IS21: IstB-like 96.1 0.015 3.2E-07 62.6 7.5 118 597-752 43-161 (178)
235 PRK05642 DNA replication initi 96.1 0.034 7.3E-07 62.4 10.6 35 602-637 46-80 (234)
236 PHA02533 17 large terminase pr 96.1 0.052 1.1E-06 67.9 13.3 155 583-749 56-219 (534)
237 PRK14956 DNA polymerase III su 96.1 0.013 2.9E-07 71.6 7.8 46 694-743 117-162 (484)
238 PRK14949 DNA polymerase III su 96.0 0.018 3.9E-07 74.5 9.3 48 694-745 115-162 (944)
239 TIGR03499 FlhF flagellar biosy 96.0 0.018 3.9E-07 66.4 8.5 86 600-707 193-281 (282)
240 PRK12402 replication factor C 96.0 0.034 7.3E-07 65.0 10.8 33 592-624 25-59 (337)
241 PRK08084 DNA replication initi 96.0 0.06 1.3E-06 60.4 12.4 35 601-636 45-79 (235)
242 PRK08691 DNA polymerase III su 96.0 0.022 4.7E-07 72.4 9.5 43 693-737 114-156 (709)
243 cd01124 KaiC KaiC is a circadi 95.9 0.016 3.6E-07 61.6 7.1 46 603-650 1-46 (187)
244 PRK12323 DNA polymerase III su 95.9 0.0096 2.1E-07 74.8 5.9 45 692-738 118-162 (700)
245 PRK12377 putative replication 95.9 0.11 2.5E-06 58.8 14.0 44 600-645 100-143 (248)
246 COG1484 DnaC DNA replication p 95.9 0.088 1.9E-06 59.9 13.0 117 595-750 99-218 (254)
247 PRK14952 DNA polymerase III su 95.9 0.046 1E-06 68.9 11.5 47 689-737 109-155 (584)
248 PRK07994 DNA polymerase III su 95.8 0.017 3.6E-07 73.3 7.7 46 689-736 110-155 (647)
249 PRK14958 DNA polymerase III su 95.8 0.022 4.7E-07 70.9 8.6 43 693-737 114-156 (509)
250 PRK14964 DNA polymerase III su 95.8 0.033 7.1E-07 68.7 10.0 46 689-736 107-152 (491)
251 PRK10867 signal recognition pa 95.8 0.045 9.6E-07 66.7 10.9 122 602-740 101-225 (433)
252 KOG0391 SNF2 family DNA-depend 95.8 0.05 1.1E-06 70.4 11.3 120 790-937 1273-1394(1958)
253 PRK09112 DNA polymerase III su 95.8 0.025 5.5E-07 67.2 8.4 46 690-737 133-178 (351)
254 PF05127 Helicase_RecD: Helica 95.8 0.0081 1.8E-07 64.5 3.7 116 605-740 1-123 (177)
255 PRK08116 hypothetical protein; 95.8 0.12 2.6E-06 59.2 13.5 35 601-636 114-148 (268)
256 PRK14961 DNA polymerase III su 95.7 0.025 5.4E-07 67.5 8.3 30 594-623 28-60 (363)
257 PRK14957 DNA polymerase III su 95.7 0.025 5.5E-07 70.6 8.5 50 686-737 107-156 (546)
258 cd03247 ABCC_cytochrome_bd The 95.7 0.043 9.3E-07 58.6 9.1 130 598-740 25-157 (178)
259 PRK08939 primosomal protein Dn 95.7 0.18 3.9E-06 59.0 14.8 112 600-749 155-269 (306)
260 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.031 6.8E-07 58.2 7.6 117 598-739 22-139 (157)
261 cd03115 SRP The signal recogni 95.6 0.11 2.4E-06 55.0 11.9 120 603-740 2-124 (173)
262 PRK06921 hypothetical protein; 95.6 0.1 2.2E-06 59.8 12.3 37 600-637 116-153 (266)
263 PF13307 Helicase_C_2: Helicas 95.6 0.014 2.9E-07 62.1 4.8 122 792-926 8-145 (167)
264 PRK06645 DNA polymerase III su 95.6 0.058 1.3E-06 67.0 10.8 29 595-623 34-65 (507)
265 PF05621 TniB: Bacterial TniB 95.6 0.064 1.4E-06 62.0 10.3 119 602-741 62-190 (302)
266 PRK14712 conjugal transfer nic 95.6 0.083 1.8E-06 72.7 13.0 124 586-740 835-968 (1623)
267 PRK14960 DNA polymerase III su 95.5 0.032 7E-07 70.4 8.3 31 593-623 26-59 (702)
268 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.044 9.5E-07 56.7 7.9 104 598-739 23-126 (144)
269 cd03222 ABC_RNaseL_inhibitor T 95.5 0.05 1.1E-06 58.5 8.5 110 597-740 21-132 (177)
270 PRK14969 DNA polymerase III su 95.4 0.07 1.5E-06 66.8 11.0 49 687-737 108-156 (527)
271 TIGR02760 TraI_TIGR conjugativ 95.4 0.073 1.6E-06 75.6 12.1 124 585-739 1018-1149(1960)
272 PRK14951 DNA polymerase III su 95.4 0.064 1.4E-06 68.0 10.5 49 687-737 113-161 (618)
273 COG1875 NYN ribonuclease and A 95.4 0.058 1.3E-06 63.1 9.1 58 582-639 224-285 (436)
274 TIGR02640 gas_vesic_GvpN gas v 95.4 0.036 7.9E-07 63.1 7.6 33 589-621 9-41 (262)
275 PF00004 AAA: ATPase family as 95.4 0.074 1.6E-06 52.8 8.9 19 604-622 1-19 (132)
276 TIGR02880 cbbX_cfxQ probable R 95.3 0.045 9.8E-07 63.2 8.1 36 601-636 58-96 (284)
277 KOG1002 Nucleotide excision re 95.3 0.2 4.4E-06 60.1 13.3 144 584-740 182-354 (791)
278 COG3587 Restriction endonuclea 95.2 0.041 8.9E-07 69.8 7.8 52 856-925 483-537 (985)
279 PRK09111 DNA polymerase III su 95.2 0.081 1.8E-06 67.0 10.5 50 686-737 120-169 (598)
280 KOG0989 Replication factor C, 95.2 0.052 1.1E-06 62.3 7.8 42 695-738 126-167 (346)
281 PRK14962 DNA polymerase III su 95.2 0.09 1.9E-06 64.9 10.5 30 594-623 26-58 (472)
282 PRK05707 DNA polymerase III su 95.2 0.036 7.9E-07 65.3 6.8 37 586-622 3-43 (328)
283 cd03228 ABCC_MRP_Like The MRP 95.2 0.083 1.8E-06 56.0 9.0 128 598-739 25-154 (171)
284 CHL00181 cbbX CbbX; Provisiona 95.2 0.063 1.4E-06 62.1 8.6 21 601-621 59-79 (287)
285 COG0552 FtsY Signal recognitio 95.1 0.14 3.1E-06 59.6 11.2 131 602-750 140-281 (340)
286 PRK13709 conjugal transfer nic 95.1 0.19 4.2E-06 70.0 14.2 126 584-740 965-1100(1747)
287 PRK14959 DNA polymerase III su 95.1 0.057 1.2E-06 68.2 8.4 30 593-622 27-59 (624)
288 PRK00411 cdc6 cell division co 95.0 0.088 1.9E-06 63.1 9.8 22 602-623 56-77 (394)
289 PHA02544 44 clamp loader, smal 95.0 0.2 4.3E-06 58.3 12.3 28 594-621 33-63 (316)
290 cd03229 ABC_Class3 This class 95.0 0.014 3E-07 62.4 2.5 130 598-739 23-160 (178)
291 PRK00149 dnaA chromosomal repl 95.0 0.15 3.3E-06 62.7 11.8 35 602-637 149-185 (450)
292 PTZ00112 origin recognition co 95.0 0.2 4.4E-06 64.7 12.9 20 602-621 782-801 (1164)
293 PRK14088 dnaA chromosomal repl 95.0 0.11 2.3E-06 63.8 10.3 36 602-638 131-168 (440)
294 PRK14963 DNA polymerase III su 94.9 0.051 1.1E-06 67.6 7.5 43 692-736 110-152 (504)
295 TIGR00678 holB DNA polymerase 94.9 0.13 2.8E-06 55.4 9.7 31 593-623 3-36 (188)
296 PRK14955 DNA polymerase III su 94.9 0.078 1.7E-06 64.1 8.7 29 594-622 28-59 (397)
297 cd01130 VirB11-like_ATPase Typ 94.9 0.17 3.6E-06 54.6 10.4 25 596-620 20-44 (186)
298 cd01122 GP4d_helicase GP4d_hel 94.8 0.12 2.5E-06 58.9 9.6 44 594-637 23-66 (271)
299 COG3421 Uncharacterized protei 94.8 0.44 9.6E-06 58.7 14.6 76 673-748 79-175 (812)
300 PF01637 Arch_ATPase: Archaeal 94.8 0.046 1E-06 59.6 6.0 31 593-623 10-42 (234)
301 cd03246 ABCC_Protease_Secretio 94.8 0.059 1.3E-06 57.3 6.7 128 598-740 25-156 (173)
302 cd03238 ABC_UvrA The excision 94.7 0.11 2.3E-06 55.9 8.4 118 598-740 18-149 (176)
303 cd03214 ABC_Iron-Siderophores_ 94.7 0.057 1.2E-06 57.8 6.3 126 598-740 22-158 (180)
304 PRK14965 DNA polymerase III su 94.7 0.082 1.8E-06 66.9 8.5 48 688-737 109-156 (576)
305 PRK14950 DNA polymerase III su 94.6 0.18 3.9E-06 64.1 11.5 29 594-622 28-59 (585)
306 cd03230 ABC_DR_subfamily_A Thi 94.6 0.077 1.7E-06 56.4 7.0 128 598-739 23-154 (173)
307 PF13177 DNA_pol3_delta2: DNA 94.6 0.096 2.1E-06 55.4 7.6 53 686-740 90-142 (162)
308 cd03216 ABC_Carb_Monos_I This 94.6 0.1 2.2E-06 55.1 7.7 124 598-748 23-148 (163)
309 PRK06067 flagellar accessory p 94.6 0.088 1.9E-06 58.7 7.6 51 598-650 22-72 (234)
310 PRK07471 DNA polymerase III su 94.5 0.25 5.4E-06 59.2 11.8 53 686-740 129-181 (365)
311 PRK04195 replication factor C 94.5 0.37 8E-06 59.8 13.7 24 601-624 39-62 (482)
312 PRK11823 DNA repair protein Ra 94.5 0.11 2.3E-06 63.9 8.8 55 598-655 77-131 (446)
313 PHA03368 DNA packaging termina 94.5 0.31 6.8E-06 61.4 12.8 145 592-750 246-400 (738)
314 TIGR03346 chaperone_ClpB ATP-d 94.4 0.8 1.7E-05 60.8 17.2 32 602-634 596-627 (852)
315 TIGR00362 DnaA chromosomal rep 94.4 0.2 4.3E-06 60.7 10.7 35 602-637 137-173 (405)
316 PF05496 RuvB_N: Holliday junc 94.4 0.073 1.6E-06 59.2 6.3 19 602-620 51-69 (233)
317 PLN03025 replication factor C 94.4 0.26 5.7E-06 57.7 11.4 21 602-622 35-55 (319)
318 PF00931 NB-ARC: NB-ARC domain 94.4 0.048 1E-06 62.1 5.1 64 593-656 7-76 (287)
319 TIGR03345 VI_ClpV1 type VI sec 94.3 0.2 4.3E-06 66.2 11.2 119 603-749 598-727 (852)
320 PRK07133 DNA polymerase III su 94.3 0.17 3.6E-06 65.1 10.2 38 686-725 106-143 (725)
321 KOG0388 SNF2 family DNA-depend 94.3 0.22 4.8E-06 61.9 10.6 121 788-936 1039-1160(1185)
322 PRK05563 DNA polymerase III su 94.3 0.11 2.4E-06 65.6 8.4 35 688-724 109-143 (559)
323 PRK09087 hypothetical protein; 94.3 0.23 5E-06 55.5 10.1 20 601-620 44-63 (226)
324 PRK06620 hypothetical protein; 94.2 0.25 5.4E-06 54.8 10.1 18 602-619 45-62 (214)
325 TIGR02928 orc1/cdc6 family rep 94.2 0.16 3.6E-06 60.1 9.3 21 602-622 41-61 (365)
326 PRK05896 DNA polymerase III su 94.2 0.13 2.7E-06 64.9 8.6 30 593-622 27-59 (605)
327 PF00437 T2SE: Type II/IV secr 94.2 0.061 1.3E-06 61.3 5.4 47 594-641 120-166 (270)
328 PRK12900 secA preprotein trans 94.2 0.054 1.2E-06 70.6 5.4 120 585-708 137-268 (1025)
329 PTZ00293 thymidine kinase; Pro 94.2 0.097 2.1E-06 57.8 6.6 39 600-639 3-41 (211)
330 PF03354 Terminase_1: Phage Te 94.1 0.18 3.9E-06 62.5 9.6 147 589-741 1-165 (477)
331 TIGR02868 CydC thiol reductant 94.1 0.17 3.8E-06 63.2 9.6 56 681-737 471-526 (529)
332 PRK14087 dnaA chromosomal repl 94.1 0.35 7.6E-06 59.5 11.9 36 602-638 142-179 (450)
333 KOG0058 Peptide exporter, ABC 94.0 0.08 1.7E-06 66.8 6.3 24 597-620 490-513 (716)
334 PRK08533 flagellar accessory p 94.0 0.18 3.9E-06 56.5 8.5 39 598-637 21-59 (230)
335 COG2256 MGS1 ATPase related to 94.0 0.38 8.3E-06 57.3 11.3 25 596-620 41-67 (436)
336 PF03266 NTPase_1: NTPase; In 94.0 0.32 6.9E-06 52.0 9.9 107 603-726 1-123 (168)
337 cd03223 ABCD_peroxisomal_ALDP 94.0 0.12 2.6E-06 54.7 6.7 118 598-740 24-148 (166)
338 COG1122 CbiO ABC-type cobalt t 93.9 0.15 3.3E-06 57.3 7.7 23 598-620 27-49 (235)
339 TIGR02782 TrbB_P P-type conjug 93.9 0.13 2.8E-06 60.0 7.4 50 592-642 123-174 (299)
340 KOG1805 DNA replication helica 93.9 0.095 2.1E-06 67.4 6.6 61 590-651 674-734 (1100)
341 PRK14948 DNA polymerase III su 93.9 0.13 2.9E-06 65.5 8.1 30 594-623 28-60 (620)
342 COG2804 PulE Type II secretory 93.9 0.18 3.8E-06 61.7 8.6 101 584-714 239-341 (500)
343 PRK07940 DNA polymerase III su 93.8 0.29 6.4E-06 59.1 10.5 51 686-739 105-155 (394)
344 COG1435 Tdk Thymidine kinase [ 93.8 0.23 5.1E-06 53.9 8.4 117 601-742 4-120 (201)
345 PRK11054 helD DNA helicase IV; 93.8 0.14 3E-06 66.1 8.0 76 578-655 188-266 (684)
346 PRK14953 DNA polymerase III su 93.8 0.15 3.2E-06 63.3 8.0 38 686-725 107-144 (486)
347 TIGR03877 thermo_KaiC_1 KaiC d 93.8 0.12 2.6E-06 58.0 6.6 51 598-650 18-68 (237)
348 cd03239 ABC_SMC_head The struc 93.8 0.44 9.4E-06 51.3 10.6 59 681-740 95-158 (178)
349 PRK12422 chromosomal replicati 93.8 0.26 5.7E-06 60.5 10.0 35 602-637 142-176 (445)
350 PRK10919 ATP-dependent DNA hel 93.7 0.11 2.3E-06 67.2 6.9 67 587-655 3-72 (672)
351 PRK13833 conjugal transfer pro 93.7 0.11 2.3E-06 61.2 6.3 48 594-642 137-186 (323)
352 PRK10865 protein disaggregatio 93.7 0.4 8.7E-06 63.6 12.1 31 603-634 600-630 (857)
353 PRK14954 DNA polymerase III su 93.6 0.19 4.1E-06 63.9 8.6 29 594-622 28-59 (620)
354 PRK08451 DNA polymerase III su 93.6 0.21 4.6E-06 62.4 8.8 43 693-737 112-154 (535)
355 cd01393 recA_like RecA is a b 93.5 0.11 2.4E-06 57.3 5.8 40 598-637 16-60 (226)
356 TIGR02397 dnaX_nterm DNA polym 93.5 0.51 1.1E-05 55.7 11.7 37 686-724 105-141 (355)
357 KOG2548 SWAP mRNA splicing reg 93.5 0.11 2.4E-06 62.4 5.8 12 67-78 320-331 (653)
358 COG0542 clpA ATP-binding subun 93.5 1.7 3.7E-05 56.3 16.7 26 602-628 522-547 (786)
359 PF00308 Bac_DnaA: Bacterial d 93.4 0.15 3.2E-06 56.7 6.6 101 602-740 35-140 (219)
360 PF01443 Viral_helicase1: Vira 93.4 0.081 1.8E-06 58.4 4.5 21 604-624 1-21 (234)
361 PRK00440 rfc replication facto 93.3 0.81 1.8E-05 53.0 12.6 20 602-621 39-58 (319)
362 COG1132 MdlB ABC-type multidru 93.2 0.41 8.9E-06 60.5 10.9 49 681-730 466-514 (567)
363 KOG2036 Predicted P-loop ATPas 93.2 5 0.00011 50.7 19.2 313 594-957 265-639 (1011)
364 PRK14970 DNA polymerase III su 93.2 0.28 6E-06 58.5 8.8 29 593-621 28-59 (367)
365 cd01125 repA Hexameric Replica 93.1 0.49 1.1E-05 53.0 10.2 37 601-637 1-48 (239)
366 COG1121 ZnuC ABC-type Mn/Zn tr 93.1 0.44 9.6E-06 54.0 9.7 72 675-751 134-208 (254)
367 cd03213 ABCG_EPDR ABCG transpo 93.1 0.22 4.7E-06 54.1 7.2 60 680-740 111-171 (194)
368 PRK14086 dnaA chromosomal repl 93.1 0.29 6.3E-06 61.8 9.1 36 602-637 315-351 (617)
369 PRK13342 recombination factor 93.1 0.44 9.6E-06 58.0 10.5 19 603-621 38-56 (413)
370 COG1474 CDC6 Cdc6-related prot 93.0 0.38 8.3E-06 57.6 9.5 25 602-627 43-67 (366)
371 COG2812 DnaX DNA polymerase II 93.0 0.16 3.4E-06 63.0 6.3 51 686-740 107-157 (515)
372 COG0553 HepA Superfamily II DN 92.9 0.28 6E-06 64.7 9.1 109 795-934 713-826 (866)
373 PRK14971 DNA polymerase III su 92.9 0.34 7.3E-06 61.9 9.4 49 688-739 111-159 (614)
374 cd03215 ABC_Carb_Monos_II This 92.9 0.31 6.7E-06 52.3 7.9 129 598-740 23-164 (182)
375 COG0470 HolB ATPase involved i 92.9 0.25 5.5E-06 57.2 7.8 49 687-737 98-146 (325)
376 PRK04841 transcriptional regul 92.9 0.34 7.3E-06 64.4 10.0 28 597-624 28-55 (903)
377 KOG0741 AAA+-type ATPase [Post 92.9 0.41 9E-06 58.4 9.4 107 603-747 540-656 (744)
378 PF12775 AAA_7: P-loop contain 92.9 0.29 6.2E-06 56.3 8.0 27 597-623 29-55 (272)
379 PRK11174 cysteine/glutathione 92.9 0.34 7.3E-06 61.5 9.4 59 681-740 486-544 (588)
380 COG0541 Ffh Signal recognition 92.9 0.6 1.3E-05 56.2 10.7 131 602-751 101-237 (451)
381 cd03282 ABC_MSH4_euk MutS4 hom 92.9 0.19 4.2E-06 55.3 6.3 20 600-619 28-47 (204)
382 TIGR01547 phage_term_2 phage t 92.7 0.47 1E-05 57.2 10.0 132 602-741 2-141 (396)
383 PRK13851 type IV secretion sys 92.7 0.17 3.7E-06 60.1 6.0 47 594-642 155-201 (344)
384 cd03369 ABCC_NFT1 Domain 2 of 92.7 0.34 7.3E-06 52.9 7.9 62 678-740 123-184 (207)
385 PRK08769 DNA polymerase III su 92.7 0.33 7.1E-06 57.1 8.2 52 686-739 101-152 (319)
386 KOG2373 Predicted mitochondria 92.7 0.022 4.8E-07 65.6 -1.3 38 589-626 261-298 (514)
387 TIGR03375 type_I_sec_LssB type 92.7 0.38 8.3E-06 62.3 9.7 59 681-740 602-660 (694)
388 cd03263 ABC_subfamily_A The AB 92.6 0.65 1.4E-05 51.1 10.1 69 678-749 131-199 (220)
389 PRK13894 conjugal transfer ATP 92.6 0.2 4.3E-06 58.9 6.2 51 591-642 137-190 (319)
390 PRK11331 5-methylcytosine-spec 92.5 0.61 1.3E-05 57.0 10.4 31 590-620 183-213 (459)
391 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.5 0.52 1.1E-05 51.8 9.1 60 680-740 140-201 (218)
392 PRK06647 DNA polymerase III su 92.4 0.33 7.1E-06 61.3 8.3 31 593-623 27-60 (563)
393 TIGR01074 rep ATP-dependent DN 92.4 0.21 4.6E-06 64.3 6.8 66 588-655 3-71 (664)
394 cd01121 Sms Sms (bacterial rad 92.3 0.19 4.1E-06 60.3 5.8 51 598-650 79-129 (372)
395 COG4555 NatA ABC-type Na+ tran 92.3 0.17 3.6E-06 55.2 4.6 65 682-747 135-201 (245)
396 COG1134 TagH ABC-type polysacc 92.3 0.46 1E-05 53.3 8.2 73 676-751 143-216 (249)
397 TIGR01075 uvrD DNA helicase II 92.2 0.2 4.3E-06 65.2 6.3 67 587-655 5-74 (715)
398 PF05876 Terminase_GpA: Phage 92.2 0.18 3.9E-06 63.6 5.7 66 587-652 17-85 (557)
399 PRK11773 uvrD DNA-dependent he 92.2 0.24 5.3E-06 64.5 7.0 66 587-655 10-79 (721)
400 PRK13341 recombination factor 92.1 0.76 1.6E-05 59.7 11.1 20 602-621 53-72 (725)
401 TIGR00602 rad24 checkpoint pro 92.0 0.44 9.5E-06 60.8 8.8 22 600-621 109-130 (637)
402 TIGR01642 U2AF_lg U2 snRNP aux 92.0 0.37 8.1E-06 59.8 8.2 11 922-932 494-504 (509)
403 PRK13695 putative NTPase; Prov 92.0 0.5 1.1E-05 50.3 8.0 19 603-621 2-20 (174)
404 PRK13900 type IV secretion sys 92.0 0.23 4.9E-06 58.8 5.9 47 594-642 153-199 (332)
405 COG1120 FepC ABC-type cobalami 92.0 0.36 7.9E-06 54.9 7.2 21 598-618 25-45 (258)
406 COG1131 CcmA ABC-type multidru 91.9 0.24 5.3E-06 57.5 5.9 65 675-740 131-197 (293)
407 cd01131 PilT Pilus retraction 91.9 0.21 4.6E-06 54.5 5.2 35 602-636 2-36 (198)
408 COG4962 CpaF Flp pilus assembl 91.9 0.28 6E-06 57.6 6.2 52 589-642 160-212 (355)
409 COG1702 PhoH Phosphate starvat 91.9 0.22 4.7E-06 58.3 5.3 55 584-638 126-181 (348)
410 TIGR03522 GldA_ABC_ATP gliding 91.9 0.27 5.8E-06 57.2 6.3 64 676-740 129-192 (301)
411 PRK13541 cytochrome c biogenes 91.9 0.087 1.9E-06 57.1 2.1 60 680-740 123-183 (195)
412 TIGR02858 spore_III_AA stage I 91.9 1.1 2.3E-05 51.7 10.9 19 602-620 112-130 (270)
413 cd03233 ABC_PDR_domain1 The pl 91.9 0.09 2E-06 57.4 2.2 72 677-749 115-187 (202)
414 TIGR03689 pup_AAA proteasome A 91.8 0.37 8.1E-06 59.9 7.6 19 600-618 215-233 (512)
415 TIGR00635 ruvB Holliday juncti 91.8 1 2.2E-05 52.2 10.8 20 602-621 31-50 (305)
416 cd01129 PulE-GspE PulE/GspE Th 91.8 0.34 7.4E-06 55.5 6.8 49 587-636 64-114 (264)
417 PHA00149 DNA encapsidation pro 91.7 1.7 3.6E-05 49.9 11.8 144 604-750 20-171 (331)
418 KOG1132 Helicase of the DEAD s 91.7 0.61 1.3E-05 59.9 9.3 118 588-708 27-257 (945)
419 PTZ00243 ABC transporter; Prov 91.7 0.46 1E-05 66.9 9.2 58 681-739 1446-1504(1560)
420 cd03227 ABC_Class2 ABC-type Cl 91.7 0.35 7.7E-06 51.0 6.3 21 601-621 21-41 (162)
421 cd03232 ABC_PDR_domain2 The pl 91.7 0.33 7.2E-06 52.5 6.3 60 681-741 109-169 (192)
422 COG1618 Predicted nucleotide k 91.6 0.69 1.5E-05 49.0 8.1 19 602-620 6-24 (179)
423 TIGR02655 circ_KaiC circadian 91.6 0.2 4.3E-06 62.2 5.0 51 598-650 260-310 (484)
424 PRK00080 ruvB Holliday junctio 91.6 0.77 1.7E-05 54.0 9.7 21 602-622 52-72 (328)
425 COG1119 ModF ABC-type molybden 91.5 0.7 1.5E-05 52.0 8.6 59 680-739 171-232 (257)
426 PRK06964 DNA polymerase III su 91.5 0.38 8.3E-06 57.0 7.0 53 685-739 119-171 (342)
427 TIGR02525 plasmid_TraJ plasmid 91.5 0.36 7.8E-06 57.9 6.8 22 599-620 147-168 (372)
428 PF13555 AAA_29: P-loop contai 91.5 0.2 4.2E-06 44.8 3.4 18 601-618 23-40 (62)
429 KOG2228 Origin recognition com 91.5 1.9 4.1E-05 50.5 12.1 127 600-742 48-183 (408)
430 PF12846 AAA_10: AAA-like doma 91.4 0.18 4E-06 57.3 4.1 42 601-643 1-42 (304)
431 TIGR02012 tigrfam_recA protein 91.4 0.35 7.6E-06 56.8 6.4 42 597-639 51-92 (321)
432 COG4608 AppF ABC-type oligopep 91.4 0.67 1.4E-05 52.9 8.3 129 598-740 36-170 (268)
433 COG3973 Superfamily I DNA and 91.4 0.4 8.7E-06 59.4 7.0 61 589-650 215-280 (747)
434 TIGR03864 PQQ_ABC_ATP ABC tran 91.3 1 2.2E-05 50.2 9.9 62 677-740 129-193 (236)
435 PRK06305 DNA polymerase III su 91.3 0.59 1.3E-05 57.6 8.7 31 593-623 28-61 (451)
436 cd03237 ABC_RNaseL_inhibitor_d 91.3 0.24 5.2E-06 56.0 4.9 62 677-740 112-176 (246)
437 cd03226 ABC_cobalt_CbiO_domain 91.2 0.28 6E-06 53.5 5.1 61 677-740 123-186 (205)
438 TIGR01271 CFTR_protein cystic 91.2 0.65 1.4E-05 65.2 9.9 59 681-740 1354-1412(1490)
439 TIGR01189 ccmA heme ABC export 91.1 0.22 4.7E-06 54.1 4.2 60 679-739 126-186 (198)
440 PRK15177 Vi polysaccharide exp 91.1 0.18 3.8E-06 55.7 3.5 33 676-708 100-132 (213)
441 cd01123 Rad51_DMC1_radA Rad51_ 91.1 0.35 7.5E-06 53.7 5.8 29 598-626 16-44 (235)
442 cd03289 ABCC_CFTR2 The CFTR su 91.1 0.49 1.1E-05 54.5 7.2 59 681-740 139-197 (275)
443 TIGR02688 conserved hypothetic 91.1 0.88 1.9E-05 55.2 9.4 27 594-620 202-228 (449)
444 PRK08699 DNA polymerase III su 91.0 1 2.2E-05 53.3 9.8 51 686-738 101-151 (325)
445 TIGR01277 thiQ thiamine ABC tr 91.0 0.21 4.5E-06 54.9 3.9 62 678-740 126-189 (213)
446 PRK13657 cyclic beta-1,2-gluca 91.0 0.55 1.2E-05 59.7 8.2 59 681-740 472-530 (588)
447 PF03237 Terminase_6: Terminas 90.9 2 4.2E-05 50.2 12.2 127 605-740 1-137 (384)
448 PF14532 Sigma54_activ_2: Sigm 90.9 0.68 1.5E-05 47.4 7.3 36 589-625 9-44 (138)
449 cd03258 ABC_MetN_methionine_tr 90.9 0.72 1.6E-05 51.3 8.1 68 679-749 139-208 (233)
450 PRK14257 phosphate ABC transpo 90.8 0.98 2.1E-05 53.4 9.6 70 677-749 222-291 (329)
451 TIGR00957 MRP_assoc_pro multi 90.8 0.66 1.4E-05 65.3 9.4 58 681-739 1422-1479(1522)
452 PLN03232 ABC transporter C fam 90.8 0.59 1.3E-05 65.7 8.9 59 681-740 1372-1430(1495)
453 PF00265 TK: Thymidine kinase; 90.8 0.32 6.9E-06 52.4 5.0 38 601-639 1-38 (176)
454 TIGR02857 CydD thiol reductant 90.8 0.65 1.4E-05 58.2 8.5 59 681-740 459-517 (529)
455 PRK11160 cysteine/glutathione 90.8 0.77 1.7E-05 58.3 9.2 59 681-740 476-534 (574)
456 TIGR02673 FtsE cell division A 90.7 0.65 1.4E-05 50.9 7.5 65 679-748 136-203 (214)
457 TIGR01166 cbiO cobalt transpor 90.7 0.16 3.4E-06 54.8 2.5 59 678-739 125-186 (190)
458 PRK09354 recA recombinase A; P 90.7 0.42 9E-06 56.8 6.2 42 598-640 57-98 (349)
459 KOG0738 AAA+-type ATPase [Post 90.7 0.71 1.5E-05 54.7 7.8 52 565-618 210-262 (491)
460 COG3854 SpoIIIAA ncharacterize 90.7 0.23 5.1E-06 55.0 3.8 25 594-618 128-154 (308)
461 TIGR03608 L_ocin_972_ABC putat 90.6 0.89 1.9E-05 49.4 8.3 60 678-740 132-194 (206)
462 KOG1131 RNA polymerase II tran 90.5 1.1 2.4E-05 54.5 9.5 32 592-623 26-57 (755)
463 PLN03130 ABC transporter C fam 90.5 0.7 1.5E-05 65.3 9.2 59 681-740 1375-1433(1622)
464 PRK13538 cytochrome c biogenes 90.5 0.71 1.5E-05 50.4 7.5 61 678-739 127-188 (204)
465 TIGR01420 pilT_fam pilus retra 90.5 0.36 7.8E-06 57.3 5.5 37 600-637 121-158 (343)
466 KOG1969 DNA replication checkp 90.5 0.54 1.2E-05 59.4 7.1 39 589-627 308-352 (877)
467 TIGR02788 VirB11 P-type DNA tr 90.4 0.42 9.1E-06 55.9 5.9 43 595-639 138-180 (308)
468 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.4 0.38 8.2E-06 53.7 5.3 60 679-739 138-197 (238)
469 cd03225 ABC_cobalt_CbiO_domain 90.4 0.25 5.4E-06 54.0 3.8 61 678-739 132-193 (211)
470 PRK11176 lipid transporter ATP 90.3 0.81 1.8E-05 58.0 8.9 59 681-740 481-539 (582)
471 PRK10436 hypothetical protein; 90.3 0.53 1.1E-05 58.1 6.9 49 585-634 200-250 (462)
472 PRK06871 DNA polymerase III su 90.3 0.71 1.5E-05 54.5 7.7 51 686-738 95-145 (325)
473 PRK10917 ATP-dependent DNA hel 90.3 1.1 2.4E-05 58.1 10.2 79 792-879 309-388 (681)
474 cd03248 ABCC_TAP TAP, the Tran 90.3 0.96 2.1E-05 50.0 8.4 62 678-740 148-209 (226)
475 cd03254 ABCC_Glucan_exporter_l 90.2 0.38 8.2E-06 53.3 5.2 61 679-740 138-198 (229)
476 PRK08058 DNA polymerase III su 90.2 1.4 3E-05 52.2 10.1 47 687-735 99-145 (329)
477 cd03259 ABC_Carb_Solutes_like 90.2 1.4 2.9E-05 48.4 9.4 67 679-748 129-197 (213)
478 KOG4368 Predicted RNA binding 90.2 0.47 1E-05 57.8 6.0 13 46-58 461-473 (757)
479 PRK10584 putative ABC transpor 90.2 1.1 2.3E-05 49.7 8.7 59 680-740 146-207 (228)
480 TIGR01846 type_I_sec_HlyB type 90.1 0.95 2.1E-05 58.8 9.4 59 681-740 594-652 (694)
481 cd03245 ABCC_bacteriocin_expor 90.1 0.17 3.7E-06 55.7 2.2 60 680-740 140-199 (220)
482 CHL00176 ftsH cell division pr 90.1 1.2 2.6E-05 57.1 10.0 21 601-621 216-236 (638)
483 TIGR02982 heterocyst_DevA ABC 90.0 0.26 5.6E-06 54.4 3.6 60 680-741 141-203 (220)
484 PHA03311 helicase-primase subu 90.0 1.5 3.1E-05 56.0 10.2 45 601-651 71-115 (828)
485 CHL00095 clpC Clp protease ATP 89.9 0.92 2E-05 60.0 9.2 24 603-627 541-564 (821)
486 PRK07399 DNA polymerase III su 89.9 2.4 5.1E-05 49.9 11.6 51 685-738 111-161 (314)
487 TIGR01192 chvA glucan exporter 89.9 0.78 1.7E-05 58.4 8.2 59 681-740 472-530 (585)
488 TIGR01642 U2AF_lg U2 snRNP aux 89.9 0.79 1.7E-05 57.0 8.1 20 794-813 465-484 (509)
489 cd03276 ABC_SMC6_euk Eukaryoti 89.9 2 4.3E-05 47.0 10.2 19 602-620 22-40 (198)
490 TIGR02974 phageshock_pspF psp 89.8 1.5 3.2E-05 51.9 9.9 38 589-627 10-47 (329)
491 cd03219 ABC_Mj1267_LivG_branch 89.8 0.32 7E-06 54.1 4.1 67 679-748 142-209 (236)
492 TIGR00960 3a0501s02 Type II (G 89.7 1.3 2.8E-05 48.7 8.7 66 680-748 138-204 (216)
493 TIGR01193 bacteriocin_ABC ABC- 89.7 1.1 2.4E-05 58.2 9.6 58 681-740 612-669 (708)
494 PRK10789 putative multidrug tr 89.7 0.9 2E-05 57.6 8.5 59 681-740 452-510 (569)
495 cd03300 ABC_PotA_N PotA is an 89.7 0.22 4.7E-06 55.6 2.6 62 678-740 128-191 (232)
496 PHA00729 NTP-binding motif con 89.6 0.63 1.4E-05 52.0 6.2 21 602-622 18-38 (226)
497 COG2255 RuvB Holliday junction 89.6 0.58 1.3E-05 53.6 5.9 19 602-620 53-71 (332)
498 COG0593 DnaA ATPase involved i 89.6 1.3 2.8E-05 53.6 9.2 41 698-740 175-218 (408)
499 PF10443 RNA12: RNA12 protein; 89.5 1.4 3.1E-05 53.3 9.4 54 699-752 149-206 (431)
500 cd03251 ABCC_MsbA MsbA is an e 89.5 1 2.2E-05 50.0 7.9 136 598-737 25-194 (234)
No 1
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-206 Score=1761.17 Aligned_cols=874 Identities=65% Similarity=1.088 Sum_probs=827.3
Q ss_pred chhhcccccCCcccCCCCCCccCCChhHHHHHHHHHHHHHhhhcCCcchHHhhhhhhhhccChhHHHHHHHhhcCCcccc
Q 000790 362 DRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGT 441 (1283)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~we~~~~~~~g~~~~~ 441 (1283)
||+|||+||+ +|+.+| ||...+ +|+++.++.+ .++.||++||.|||++|||+++.
T Consensus 169 dR~WYdnde~---~d~~~n-pf~~~~-----~E~~l~~~~~----------------ki~~dn~~we~nrl~~sgvv~~~ 223 (1042)
T KOG0924|consen 169 DREWYDNDEG---GDEVHN-PFSELS-----REAELLEKIQ----------------KINNDNALWETNRLLTSGVVQRM 223 (1042)
T ss_pred chhhhhcCCc---cccccC-chhcch-----hHHHHHHHHH----------------hhcchhhhhhhhcccchhhhhcc
Confidence 7999999999 566677 665433 6778877542 27889999999999999999999
Q ss_pred CCCCCCCccccceeEEeecCCCCcccccchhhcccCCCccCCCCCCChHHHHHhhcChhHHHHHHHHHHHHHHhhhHhhh
Q 000790 442 ELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELA 521 (1283)
Q Consensus 442 ~~~~~~~~~~e~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~k~~~~~~~~~a~~~s~~~~~~~~~~~~~k~~~~~~~~~ 521 (1283)
+|..+|+.+++.+ ++||+++||||+|+.+++++.+||.||+||++++|+.|++||.+|+++|++++.+|..+..|+++
T Consensus 224 e~~~~f~~~e~~~--llv~~i~~~fld~r~~~~k~~~~v~pv~d~~sd~a~~a~~gs~lv~~~r~~~~~~k~~~~~~~~~ 301 (1042)
T KOG0924|consen 224 EVISDFLSDEARE--LLVHNIVPPFLDGREVFTKQAEPVIPVRDPTSDLAISARRGSKLVRERREKEERKKAQKKHWKLA 301 (1042)
T ss_pred cccCccchhhHHH--hhhhcccCCccccceeeecccccccccCCCchhhhhhhhccccHHHHHHHhhhhhhhhhhhhhhc
Confidence 9999998877666 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccccccccCccccccchhhhhhhhccccchhhhhhHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 000790 522 GSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIREN 601 (1283)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~ 601 (1283)
+++|||++|+++..+ +++..+++...+|..|+++.+..+.|+..+.+.+||++|||+.++.+++..|..|
T Consensus 302 ~~~lgn~~glek~~~----------ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq~LPvf~~R~~ll~~ir~n 371 (1042)
T KOG0924|consen 302 GTALGNVMGLEKKND----------EDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQYLPVFACRDQLLSVIREN 371 (1042)
T ss_pred chhhccccccccCcc----------cccccccccchhhhhccccccccccccccchHHHHHhhcchHHHHHHHHHHHhhC
Confidence 999999999987643 4556777788889999998888899999999999999999999999999999999
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEEe
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYM 681 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~ 681 (1283)
++|||+|+||||||||++|||++.+|..+|.|+||||+|++|++||++|++||+..+|..|||.|||++++++.|.|.||
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Ikym 451 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYM 451 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHhCCCCeEeecCcc
Q 000790 682 TDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRT 761 (1283)
Q Consensus 682 T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f~~~pvi~i~gr~ 761 (1283)
|+|+||++.+.+..|.+|++|||||||||++++|+|+++||.++..+.++|+|++|||||+++|++|||+||.|.|+||+
T Consensus 452 TDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpGRT 531 (1042)
T KOG0924|consen 452 TDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRT 531 (1042)
T ss_pred ccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCC
Q 000790 762 FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLP 841 (1283)
Q Consensus 762 ~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~ 841 (1283)
|||++.|.+.+++||+++++++++.||+..++|+||||++|+++|+.+|..|.+.+.++.... ...+.|+|+|++||
T Consensus 532 yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~---~~~L~vlpiYSQLp 608 (1042)
T KOG0924|consen 532 YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP---TTDLAVLPIYSQLP 608 (1042)
T ss_pred cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC---CCceEEEeehhhCc
Confidence 999999999999999999999999999999999999999999999999999999998875432 24899999999999
Q ss_pred HHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCC
Q 000790 842 ADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPG 921 (1283)
Q Consensus 842 ~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G 921 (1283)
.+.|.+||++.+.|.+|||||||||||+||||+|.|||||||+|.++|||+.||++|+++|||+|++.||+|||||+|||
T Consensus 609 ~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG 688 (1042)
T KOG0924|consen 609 ADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPG 688 (1042)
T ss_pred hhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcccccCCCCCHHH
Q 000790 922 TCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLG 1001 (1283)
Q Consensus 922 ~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG 1001 (1283)
.||||||+..|.++|.+.++|||||+||.++||+||+||+++++.|+||||||.+.+..||++||.|||||+.|.||++|
T Consensus 689 ~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG 768 (1042)
T KOG0924|consen 689 TCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLG 768 (1042)
T ss_pred ceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHHHHHHHHhhcccCccHHHHHHHHHHHHhhcc
Q 000790 1002 WKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQY 1081 (1283)
Q Consensus 1002 ~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~~ 1081 (1283)
+.|++|||||.|+||||.|+.+||++|||+||+|||++.+|++|+++.++++++|+||++++||||||||||++|+++++
T Consensus 769 ~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~ 848 (1042)
T KOG0924|consen 769 RKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKY 848 (1042)
T ss_pred HHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccchhhhhcccceeeeecCCcceeeCC
Q 000790 1082 RGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHP 1161 (1283)
Q Consensus 1082 ~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHP 1161 (1283)
+..||++|||+.++|++|+++|.||+.||+.+++++.|| .+||+|++|||+|||+|+|++++.|.|+++++|.+|+|||
T Consensus 849 ~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHP 927 (1042)
T KOG0924|consen 849 SSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHP 927 (1042)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecc
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHHhhCCcccccccCchhHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 000790 1162 SSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQ 1241 (1283)
Q Consensus 1162 sS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 (1283)
+|+|+++ +.|+||||||+++|+|+||+|||.|+|+||+|++|+||++++...+ ++|..+++++..||.+|.......
T Consensus 928 sS~L~g~-y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~s--e~k~~~~ed~~~~e~~~~~~~~~~ 1004 (1042)
T KOG0924|consen 928 SSVLHGL-YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTS--EHKHPVVEDGSDMEEEMFKAARDL 1004 (1042)
T ss_pred hHhhhcC-CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccc--hhccccccccchhhhhHHHHHHHH
Confidence 9999998 8999999999999999999999999999999999999999987655 888899999999999998887666
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccCCCCCCCCccCccCC
Q 000790 1242 ADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPKKF 1281 (1283)
Q Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1281 (1283)
...+.+.+..... ...+..+|.+||.+++. ++++|+|+
T Consensus 1005 ~~~~~~~~~~~~~-~~~~~~k~~~~~~~~e~-~~k~~~r~ 1042 (1042)
T KOG0924|consen 1005 VGRRLESKKASDK-NYKRSTKINEPGEKKEE-PPKKPRRI 1042 (1042)
T ss_pred HHhhccchhcccc-chhhhhhhcCccccccC-CCCCCCCC
Confidence 6554444443332 25567899999999987 55666663
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-153 Score=1324.24 Aligned_cols=634 Identities=53% Similarity=0.941 Sum_probs=618.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCE-EEEecchHHHHHHHHHHHHH
Q 000790 574 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGI-VGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 574 ~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~-Il~tqPrR~LA~qvakrVa~ 652 (1283)
+.++|.+.|+.||||++++++|.+|.+++++||+|+||||||||+||||++.++.++++ |+||||||++|++||.||++
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998876 99999999999999999999
Q ss_pred HhccccCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCce
Q 000790 653 EMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 732 (1283)
Q Consensus 653 e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlk 732 (1283)
+||+.+|..|||+|+|++|++..|.|+|||+||||++++.+|+|..|++|||||||||++++|+|+++++++...||++|
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCcCHHHHHHHhCCCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 000790 733 LIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 812 (1283)
Q Consensus 733 lIlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~ 812 (1283)
++++|||+|+++|+.||+++|||.+||+.|||+++|...|..||+++++..+++||.+++.|+||||++|+++|+.+++.
T Consensus 413 llIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 413 LLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKEN 492 (902)
T ss_pred EEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCC
Q 000790 813 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 892 (1283)
Q Consensus 813 L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~ 892 (1283)
|.+++..+. .....+.|+|+|++||.+.|.+||++.++|.+|||+|||||||||||+||.||||+||+|++.|||+
T Consensus 493 l~~~~~~LG----ski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 493 LKERCRRLG----SKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHhc----cccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 998877663 4567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCC
Q 000790 893 MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDP 972 (1283)
Q Consensus 893 ~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldp 972 (1283)
+||.+|.+.|||++++.||+|||||+|||+||||||...|.+.+...++|||+|+||.++||.||+|||.|+.+||||||
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDp 648 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDP 648 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcC-CCcccCChhhHHH
Q 000790 973 PPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSV-PSVFFRPKDRAEE 1051 (1283)
Q Consensus 973 P~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~-~~~f~~p~~~~~~ 1051 (1283)
||.+++..||++|+.|||||..|+||.+|+.|++||+||+|+|||+.+..++|.+||++||||||+ +++|++|++..-.
T Consensus 649 Pp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ 728 (902)
T KOG0923|consen 649 PPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVH 728 (902)
T ss_pred CChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5799999999999
Q ss_pred HHHHHHhhcccCccHHHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q 000790 1052 SDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAI 1131 (1283)
Q Consensus 1052 ~~~~r~~f~~~~sDhltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l 1131 (1283)
+|+++..|..+.|||+++|++|++|+..+++.+||.+||+++++|.+|++||.||..+|...++.+.||..+.+.|++||
T Consensus 729 ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i 808 (902)
T KOG0923|consen 729 ADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAI 808 (902)
T ss_pred hhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888999999
Q ss_pred HhcccchhhhhcccceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHHhhCCccccccc
Q 000790 1132 CSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 1211 (1283)
Q Consensus 1132 ~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~~p~~~~~~~ 1211 (1283)
.+|||+|+|++...|.|.++...+.|++||.|+||. ..|.|||||+||+|+|+||+.++.|.++||.|++||||+.++
T Consensus 809 ~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~--~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kd 886 (902)
T KOG0923|consen 809 TAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFE--QLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKD 886 (902)
T ss_pred hccccccceeccCCCcceeeccCcceeecCcccccc--cCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhh
Confidence 999999999999999999999999999999999997 678999999999999999999999999999999999999877
Q ss_pred Cc
Q 000790 1212 SD 1213 (1283)
Q Consensus 1212 ~~ 1213 (1283)
..
T Consensus 887 le 888 (902)
T KOG0923|consen 887 LE 888 (902)
T ss_pred cc
Confidence 53
No 3
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-150 Score=1325.89 Aligned_cols=630 Identities=55% Similarity=0.964 Sum_probs=610.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHH
Q 000790 574 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEE 653 (1283)
Q Consensus 574 ~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e 653 (1283)
....+.+||+.|||+.++.+|+..+.+|+++||+|+||||||||+||||++.++...|+|+||||||++|+++|+||++|
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceE
Q 000790 654 MDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 654 ~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlkl 733 (1283)
+++.+|..|||.|||+++++..|+|+|||+|+|||+++.||.|++|++|||||||||+++||+|+++||+++..++++|+
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcCHHHHHHHhCCCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 000790 734 IVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFAL 813 (1283)
Q Consensus 734 IlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L 813 (1283)
|+||||+|+++|++||++||++.|+||.|||+++|.+.+..||+.+++..+++||..+++|+||||++|++||+.+|+.|
T Consensus 199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCC
Q 000790 814 KERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKM 893 (1283)
Q Consensus 814 ~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~ 893 (1283)
.+.++.+. ...+. .++|+||.||.++|.+||++.+.|.+||||||||||||||||||.||||+|++|++.|||++
T Consensus 279 ~e~~~~~~----~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 279 RERAKSLP----EDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHhhhcc----ccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 98876542 22233 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCCC
Q 000790 894 GMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPP 973 (1283)
Q Consensus 894 g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldpP 973 (1283)
||+.|.+.|+|++++.||+|||||++||+|||||++.+| +.|+..++|||+|+||+.++|+||+||++|++.|+|||||
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P 432 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPP 432 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcccccCCCCCH-HHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHH-
Q 000790 974 PQENILNSMYQLWVLGALNNVGALTD-LGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEE- 1051 (1283)
Q Consensus 974 ~~~~i~~al~~L~~lgaLd~~g~LT~-lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~- 1051 (1283)
+.+++..||+.|+.+||||++|.||. +|..|+.|||+|.++|||+.+..+||++|+++||||||+.++|++|.+...+
T Consensus 433 ~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~ 512 (674)
T KOG0922|consen 433 PPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAED 512 (674)
T ss_pred ChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhh
Confidence 99999999999999999999999998 9999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHhhcccCccHHHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q 000790 1052 SDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAI 1131 (1283)
Q Consensus 1052 ~~~~r~~f~~~~sDhltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l 1131 (1283)
++..|.+|..++|||+||||+|..|..++.+..||.+||||.+.|++|.+||+||..++.+++++..+|+.|.+.|++||
T Consensus 513 a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l 592 (674)
T KOG0922|consen 513 ADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCL 592 (674)
T ss_pred hhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcccchhhhhc-ccceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHHhhCCcccccc
Q 000790 1132 CSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVK 1210 (1283)
Q Consensus 1132 ~~g~~~nvA~~~-~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~~p~~~~~~ 1210 (1283)
|+|||.|+|++. +.| |.++.+|.+|+|||||+||. .+|+||||||++.|+|.||++||.|++.||.+++|+||.+.
T Consensus 593 ~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~--~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~ 669 (674)
T KOG0922|consen 593 CAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFR--RKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQS 669 (674)
T ss_pred HHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhc--CCCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhcc
Confidence 999999999997 556 99999999999999999997 45999999999999999999999999999999999998776
Q ss_pred cC
Q 000790 1211 DS 1212 (1283)
Q Consensus 1211 ~~ 1212 (1283)
+.
T Consensus 670 ~~ 671 (674)
T KOG0922|consen 670 DE 671 (674)
T ss_pred cc
Confidence 53
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-139 Score=1176.86 Aligned_cols=632 Identities=48% Similarity=0.849 Sum_probs=604.9
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHH
Q 000790 572 FAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 572 ~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa 651 (1283)
..++..|++.|..||||.++.++++.+.+||.+|++|+||||||||+|||+++........|+||||+|++|+++|.||+
T Consensus 33 s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVa 112 (699)
T KOG0925|consen 33 SQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVA 112 (699)
T ss_pred cHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999877777889999999999999999999
Q ss_pred HHhccccCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCc
Q 000790 652 EEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDF 731 (1283)
Q Consensus 652 ~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dl 731 (1283)
+||...+|..|||.|+|++|++++|.+.|||+|||+++.++++.|..|++||+||||||++.+|+|+++||+++..+|++
T Consensus 113 dEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdL 192 (699)
T KOG0925|consen 113 DEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDL 192 (699)
T ss_pred HHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCcCHHHHHHHhCCCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 732 KLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 732 klIlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
|+|+||||+++.+|..||+++|++.||| ++||+++|...+..||+++++..+++||..+.+|+||||++|.++|+.+|+
T Consensus 193 k~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~ 271 (699)
T KOG0925|consen 193 KLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACR 271 (699)
T ss_pred eEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCC-----CeeEEEecCcccccCCCCCeeEEEEcCCccc
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDGIFYVIDTGYGKM 886 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G-----~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~ 886 (1283)
.+......+. .....+.|+||| +.+|..||++.+.. .+||||+|||||++++|++|.||||+||.|+
T Consensus 272 ~i~re~~~L~----~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kq 343 (699)
T KOG0925|consen 272 KISREVDNLG----PQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQ 343 (699)
T ss_pred HHHHHHHhhc----cccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhh
Confidence 9987665553 456789999999 67788999988643 5899999999999999999999999999999
Q ss_pred eeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccC
Q 000790 887 KVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLD 966 (1283)
Q Consensus 887 ~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~ 966 (1283)
++|||+....+|.+.|||++++.||+|||||+.||+||+|||++.|..+|.+.+.|||+++||+++||+||.+||+++.+
T Consensus 344 kVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvh 423 (699)
T KOG0925|consen 344 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVH 423 (699)
T ss_pred cccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCCh
Q 000790 967 FDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPK 1046 (1283)
Q Consensus 967 f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~ 1046 (1283)
|+|||||.++++.+|++.|..|+|||++|+||++|..|++|||||.+|||||.+++|.|++|+|+|+|||++|+.|++|.
T Consensus 424 fdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~ 503 (699)
T KOG0925|consen 424 FDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPT 503 (699)
T ss_pred CcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hhHHHHHHHHHhhcccCccHHHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCC----
Q 000790 1047 -DRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSG---- 1121 (1283)
Q Consensus 1047 -~~~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~---- 1121 (1283)
+.++.++.+++.|.+..|||+||||||.+|+++.....||.+||||+++|..|..||.||..+|.++++++.+..
T Consensus 504 ~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~ 583 (699)
T KOG0925|consen 504 SSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSR 583 (699)
T ss_pred hhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCCh
Confidence 778889999999999999999999999999999988999999999999999999999999999999999876543
Q ss_pred CChHHHHHHHHhcccchhhhhcccceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHHh
Q 000790 1122 HDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSE 1201 (1283)
Q Consensus 1122 ~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e 1201 (1283)
.+...|+|||++|||++||+....|.|+++.+++.|+|||+++|- .+|+||+|||++.|+|+|||.||.|.|+||.+
T Consensus 584 ~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~---~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~ 660 (699)
T KOG0925|consen 584 DYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD---HKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVE 660 (699)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccC---CCCCeEEEeeEEeeccceeeeecccCHHHHHH
Confidence 346689999999999999999888899999999999999999986 57999999999999999999999999999999
Q ss_pred hCCcccccccCchh
Q 000790 1202 LGPMFFSVKDSDTS 1215 (1283)
Q Consensus 1202 ~~p~~~~~~~~~~~ 1215 (1283)
++|+||...+...+
T Consensus 661 laP~YydlsNfp~~ 674 (699)
T KOG0925|consen 661 LAPQYYDLSNFPPS 674 (699)
T ss_pred hchhhcccccCCch
Confidence 99999988877543
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9e-118 Score=1134.74 Aligned_cols=614 Identities=37% Similarity=0.635 Sum_probs=569.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 579 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 579 ~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
...+..|||+.++.+|+.+|.+|+++||+|+||||||||+|+++++.+....+.|+|+||+|++|.++|.+|+++++..+
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 45677899999999999999999999999999999999999999998766667899999999999999999999999999
Q ss_pred CCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 659 GDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 659 G~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
|..|||.++|++..+.+|.|+|||+|+|++++..++.|.+|++|||||||||++++||++++|+.++..++++|+|+|||
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSA 226 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA 226 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CcCHHHHHHHhCCCCeEeecCcccceeeeecCCCh------hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 000790 739 TLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPC------EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 812 (1283)
Q Consensus 739 Tld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~------~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~ 812 (1283)
|++.+.|++||+++|++.++|+.|||+++|..... .+++...+..+..++ ..++|+|||||||+.+|+.+++.
T Consensus 227 Tid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~ 305 (1294)
T PRK11131 227 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADA 305 (1294)
T ss_pred CCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999999999999999986532 345555544444343 45679999999999999999998
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCC
Q 000790 813 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 892 (1283)
Q Consensus 813 L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~ 892 (1283)
|.+. ..+.+.|+++||+|++++|.++|+. .|.++|||||||||+|||||+|+||||+|++|.+.||+.
T Consensus 306 L~~~----------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 306 LNKL----------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHhc----------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 8652 2345679999999999999999986 578999999999999999999999999999999999999
Q ss_pred CCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCC
Q 000790 893 MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDP 972 (1283)
Q Consensus 893 ~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldp 972 (1283)
+|++.|.+.|+|+++|.||+|||||+++|+||+||++++| ..+.+++.|||+|++|.++||++|++|+.++..|+|+||
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~-~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldp 452 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDF-LSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEA 452 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHH-HhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCC
Confidence 9999999999999999999999999999999999999998 458899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhcccccC-----CCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChh
Q 000790 973 PPQENILNSMYQLWVLGALNNV-----GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKD 1047 (1283)
Q Consensus 973 P~~~~i~~al~~L~~lgaLd~~-----g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~ 1047 (1283)
|+.++|..|++.|+.+||||.+ ++||++|+.|+.|||||.+|||||.|+.+||++|+++||||||++++|++|.+
T Consensus 453 P~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~ 532 (1294)
T PRK11131 453 PDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMD 532 (1294)
T ss_pred CCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCch
Confidence 9999999999999999999864 57999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCccHHHHHHHHHHHHhhcc------chhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000790 1048 RAEESDAAREKFFVQESDHLTLLYVYQQWKEHQY------RGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSG 1121 (1283)
Q Consensus 1048 ~~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~~------~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~ 1121 (1283)
..++++.++.+|..+.||||++||+|+.|..... ...||++||||+.+|+++.+++.||..+++++|++.+++.
T Consensus 533 ~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~ 612 (1294)
T PRK11131 533 KQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEP 612 (1294)
T ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 9999999999999999999999999999975322 2479999999999999999999999999999999998888
Q ss_pred CChHHHHHHHHhcccchhhhhcccc-eeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHH
Q 000790 1122 HDFDVVRKAICSAYFHNAARLKGVG-EYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLS 1200 (1283)
Q Consensus 1122 ~~~~~i~~~l~~g~~~nvA~~~~~g-~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~ 1200 (1283)
.+++.|++|||+|||.|||+....+ .|.+.+ +..|+|||+|+||+ .+|+||||+|++.|++.|||+|+.|+|+||.
T Consensus 613 ~~~~~i~~all~G~~~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~--~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~ 689 (1294)
T PRK11131 613 AEYREIHTALLTGLLSHIGMKDAEKQEYTGAR-NARFSIFPGSGLFK--KPPKWVMVAELVETSRLWGRIAARIEPEWIE 689 (1294)
T ss_pred ccHHHHHHHHHhhcHHHHeeccCCCCeEEccC-CcEEEEcCCccccC--CCCCEEEEEeeeccChhhhhhhcccCHHHHH
Confidence 8999999999999999999876654 577655 77899999999997 5799999999999999999999999999999
Q ss_pred hhCCccccc
Q 000790 1201 ELGPMFFSV 1209 (1283)
Q Consensus 1201 e~~p~~~~~ 1209 (1283)
+++|+||+.
T Consensus 690 ~~a~~l~~~ 698 (1294)
T PRK11131 690 PLAQHLIKR 698 (1294)
T ss_pred HHHHHhccc
Confidence 999999754
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-115 Score=1079.26 Aligned_cols=626 Identities=44% Similarity=0.692 Sum_probs=580.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHH
Q 000790 574 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEE 653 (1283)
Q Consensus 574 ~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e 653 (1283)
+...+.+.+..|||+..+.+|+.+|.+|+++||+||||||||||+|++|++.++..+++|+|+||||++|.++|+||+++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred hccccCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC-Cce
Q 000790 654 MDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFK 732 (1283)
Q Consensus 654 ~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~-dlk 732 (1283)
+++++|..|||.|||++.+++.|+|+|||+|+|+++++.|+.|+.|++|||||||||++++|+++++++.++..++ ++|
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887666 799
Q ss_pred EEEeccCcCHHHHHHHhCCCCeEeecCcccceeeeecCCChhhH-HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 733 LIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDY-VEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 733 lIlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dy-v~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
||+||||+|.++|+.||+++|++.++|++|||+++|.+....+| +..++..++.++...+.|+||||+||+.+|+.+++
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred EEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999888889 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
.|.+. . ....+.|+||||.|+.++|.+||++.+.|++|||+||||||||||||||+||||+|++|++.||+
T Consensus 278 ~L~~~--~-------l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 278 WLEKA--E-------LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHhc--c-------ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 99861 1 11578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccC-cccCCCCC
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKID-NLLDFDFM 970 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~-~l~~f~fl 970 (1283)
++|++.|.+.|||++++.||+|||||++||+|||||++++|. .|+.++.|||+++||+.++|+|++||+. |+..|+|+
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fl 427 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFL 427 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccC
Confidence 999999999999999999999999999999999999999997 8999999999999999999999999995 99999999
Q ss_pred CCCChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCC---cccCChh
Q 000790 971 DPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPS---VFFRPKD 1047 (1283)
Q Consensus 971 dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~---~f~~p~~ 1047 (1283)
|||+..++..|+..|+.|||||+.|.||++|+.|+.||++|++|+||+.|..+||+.++++|||||++++ .|+.+.+
T Consensus 428 d~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~ 507 (845)
T COG1643 428 DPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVK 507 (845)
T ss_pred CCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 6888776
Q ss_pred hHH---HHHHHH-Hhhcc---cCccHHHHHHHHHHHHhhc------cchhhhHhhccChHHHHHHHHHHHHHHHHHHh-c
Q 000790 1048 RAE---ESDAAR-EKFFV---QESDHLTLLYVYQQWKEHQ------YRGDWCEEHYLHVKSLRKAREVRSQLLDILKT-L 1113 (1283)
Q Consensus 1048 ~~~---~~~~~r-~~f~~---~~sDhltll~vf~~w~~~~------~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~-~ 1113 (1283)
... ..+.++ .++.. +.+||+++|++|..|.... ...+||..++++.++|.++..++.+++..+.. .
T Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~ 587 (845)
T COG1643 508 LRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALA 587 (845)
T ss_pred hhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccc
Confidence 655 344333 44555 6899999999999998876 56799999999999999999999999988877 5
Q ss_pred CCCCCCCCC------------------ChHHHHHHHHhcccchhhhhcccce-eeeecCCcceeeCCCCc-ccCCCCCCC
Q 000790 1114 KIPLTSSGH------------------DFDVVRKAICSAYFHNAARLKGVGE-YINCRNGMPCHLHPSSA-IYGLGYTPE 1173 (1283)
Q Consensus 1114 ~~~~~s~~~------------------~~~~i~~~l~~g~~~nvA~~~~~g~-y~~~~~~~~v~lHPsS~-l~~~~~~p~ 1173 (1283)
+..+..... .|+.+++|+++||+.|++++...+. |+++.++..|++||+|+ ++. ..++
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~--~~~~ 665 (845)
T COG1643 588 GRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGL--VLLE 665 (845)
T ss_pred cchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcc--cCcc
Confidence 443332222 3688999999999999999876655 99999999999999994 443 6789
Q ss_pred ceeeehhhcchhhhhh-----------hccccCHHHHHhhCC---ccccccc
Q 000790 1174 YVVYHELILTTKEYMQ-----------CATAVEPQWLSELGP---MFFSVKD 1211 (1283)
Q Consensus 1174 ~vvy~el~~tsk~y~r-----------~vt~I~p~wL~e~~p---~~~~~~~ 1211 (1283)
|++|++++.|++.|++ +++++.+.||.+.++ +|+....
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~~~~~~~~~~ 717 (845)
T COG1643 666 WIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVKGLRGLDGLTK 717 (845)
T ss_pred hHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhccccchhhhhhh
Confidence 9999999999999999 699999999999887 5654443
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.3e-114 Score=1103.66 Aligned_cols=616 Identities=38% Similarity=0.655 Sum_probs=570.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
....+..|||+.++.+|+.+|.+|+++||+|+||||||||+|+++++.+....++|+|+||+|++|.++|.+|++++++.
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC
Confidence 45567789999999999999999999999999999999999999999877667799999999999999999999999999
Q ss_pred cCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 658 LGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 658 lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
+|..|||.++|+++.+.+|.|+|||+|+|++++..++.|.+|++|||||||||++++|+++++++.++..++++|+|+||
T Consensus 139 lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmS 218 (1283)
T TIGR01967 139 LGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITS 218 (1283)
T ss_pred cceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCHHHHHHHhCCCCeEeecCcccceeeeecCCCh------hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 738 ATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPC------EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 738 ATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~------~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
||++.+.|++||+++|++.++|+.|||+++|..... .+++...+..+..++ ...+|+|||||||+.+|+.++.
T Consensus 219 ATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~-~~~~GdILVFLpg~~EI~~l~~ 297 (1283)
T TIGR01967 219 ATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF-AEGPGDILIFLPGEREIRDAAE 297 (1283)
T ss_pred CCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHH-hhCCCCEEEeCCCHHHHHHHHH
Confidence 999999999999999999999999999999976432 134444444333333 3457999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
.|.+. ....+.|++|||+|+.++|.++|..+ +.++|||||||||+|||||+|+||||+|++|.+.||+
T Consensus 298 ~L~~~----------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 298 ILRKR----------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred HHHhc----------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 88753 12467899999999999999999875 3589999999999999999999999999999999999
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCC
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMD 971 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fld 971 (1283)
.+||+.|.+.|+|+++|.||+|||||+++|+||+||++++|. .+.+++.|||+|++|..++|+++++|+.++..|+|+|
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~-~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fld 444 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN-SRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIE 444 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH-hhhhccCcccccccHHHHHHHHHhcCCCCcccccCCC
Confidence 999999999999999999999999999999999999999984 5889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHhcccccCC---CCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhh
Q 000790 972 PPPQENILNSMYQLWVLGALNNVG---ALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDR 1048 (1283)
Q Consensus 972 pP~~~~i~~al~~L~~lgaLd~~g---~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~ 1048 (1283)
||+..+|..|++.|+.+||||++| .||++|+.|+.|||+|++|+|||.|+.++|++++++|||||+++++|.+|.+.
T Consensus 445 pP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~ 524 (1283)
T TIGR01967 445 APDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEK 524 (1283)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchh
Confidence 999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHhhc------cchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 000790 1049 AEESDAAREKFFVQESDHLTLLYVYQQWKEHQ------YRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGH 1122 (1283)
Q Consensus 1049 ~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~------~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~ 1122 (1283)
.++++.++.+|....|||+++||+|+.|.... ....||.+||||+..|+++.+++.||..++++++++.+++..
T Consensus 525 ~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~ 604 (1283)
T TIGR01967 525 QQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPA 604 (1283)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCc
Confidence 99999999999999999999999999997532 225899999999999999999999999999999988877777
Q ss_pred ChHHHHHHHHhcccchhhhhcccceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHHhh
Q 000790 1123 DFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSEL 1202 (1283)
Q Consensus 1123 ~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~ 1202 (1283)
+++.|.+|||+|||+|||+.++.|.|.+. +|..++|||+|+|++ .+|+||||+|++.|++.||++|++|+|+||.++
T Consensus 605 ~~~~i~~~l~~g~~~~iA~~~~~~~y~~~-~g~~~~ihP~S~L~~--~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~ 681 (1283)
T TIGR01967 605 DYDAIHKALLSGLLSQIGMKDEKHEYDGA-RGRKFHIFPGSPLFK--KPPKWVMAAELVETSKLYARLVAKIEPEWVEPV 681 (1283)
T ss_pred cHHHHHHHHHHhhHHHHheeCCCCcEEec-CCcEEEECCCccccC--CCCCEEEEeeecccchheEeeeccCCHHHHHHH
Confidence 88889999999999999998777789865 578899999999987 469999999999999999999999999999999
Q ss_pred CCcccccc
Q 000790 1203 GPMFFSVK 1210 (1283)
Q Consensus 1203 ~p~~~~~~ 1210 (1283)
+|++|...
T Consensus 682 ~~~~~~~~ 689 (1283)
T TIGR01967 682 AGHLIKKN 689 (1283)
T ss_pred hHHHhEec
Confidence 99998755
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-111 Score=989.56 Aligned_cols=636 Identities=40% Similarity=0.680 Sum_probs=570.9
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-----CCEEEEecchHHHHHHH
Q 000790 572 FAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NGIVGCTQPRRVAAMSV 646 (1283)
Q Consensus 572 ~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-----~~~Il~tqPrR~LA~qv 646 (1283)
..+..++++.|..|||+...++|+++|..|.+|||||+||||||||+||||+++++.. +++|+||||||++|+.+
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999875 46999999999999999
Q ss_pred HHHHHHHhccccCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH
Q 000790 647 AKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA 726 (1283)
Q Consensus 647 akrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~ 726 (1283)
|+||+.+++. +|..|||+|||+...++.|.|+|||+|+||+++.+|..|.+|++|||||||||+++||+|+++|.+++.
T Consensus 322 AkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~ 400 (1172)
T KOG0926|consen 322 AKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVP 400 (1172)
T ss_pred HHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hc----------CCceEEEeccCcCHHHHHH---HhCC-CCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCC
Q 000790 727 RR----------RDFKLIVTSATLNAQKFSD---FFGS-VPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSP 792 (1283)
Q Consensus 727 ~r----------~dlklIlmSATld~e~fa~---~f~~-~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~ 792 (1283)
.| ..+|+|+||||+-+..|.+ .|.. .|++.++.|.|||.+||.+....||+..++...+.||...|
T Consensus 401 LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 401 LRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred HHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCC
Confidence 54 2689999999998888873 4543 57899999999999999998888999999999999999999
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHh------------------------------------------------hcc-
Q 000790 793 PGDILIFMTGQDEIEAACFALKERMEQL------------------------------------------------ISS- 823 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~l~~l------------------------------------------------~~~- 823 (1283)
+|.||||++|+.+++.+|..|++.+... ...
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 9999999999999999999998763200 000
Q ss_pred -------------------------------------ccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcc
Q 000790 824 -------------------------------------TTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIA 866 (1283)
Q Consensus 824 -------------------------------------~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIA 866 (1283)
.......+.|+||||-|+.+.|.+||+..+.|.+-||||||+|
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 0011236789999999999999999999999999999999999
Q ss_pred cccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhc
Q 000790 867 ETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQR 946 (1283)
Q Consensus 867 EtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r 946 (1283)
|||||||+|+||||||++|...||..+|++++.+.|+|+|++.||+|||||+|||+|||||+...|.+.|..+..|||++
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk 720 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILK 720 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred cchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCch
Q 000790 947 TNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCL 1026 (1283)
Q Consensus 947 ~~L~~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~ 1026 (1283)
.+.++++|+||+|+|..+.+|||+.||....+..|...|..|||||++|.||+||+.|+.|||.|+++|||+.+.+.+|+
T Consensus 721 ~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~l 800 (1172)
T KOG0926|consen 721 KPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLL 800 (1172)
T ss_pred CcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccCC--------------hh------------------hHHHHHHHHHhhcccCccHHHHHHHHH
Q 000790 1027 DEVLTIVSMLSVPSVFFRP--------------KD------------------RAEESDAAREKFFVQESDHLTLLYVYQ 1074 (1283)
Q Consensus 1027 ~e~l~I~a~ls~~~~f~~p--------------~~------------------~~~~~~~~r~~f~~~~sDhltll~vf~ 1074 (1283)
.-++.+|++||+..+|+.- .+ ++....+++.+|....||-|+||.+..
T Consensus 801 py~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~ 880 (1172)
T KOG0926|consen 801 PYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVS 880 (1172)
T ss_pred hHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 9999999999998777531 11 111233455667777899999999999
Q ss_pred HHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCC-------CCCCC-CC--ChHHHHHHHHhcccchhhhhcc
Q 000790 1075 QWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKI-------PLTSS-GH--DFDVVRKAICSAYFHNAARLKG 1144 (1283)
Q Consensus 1075 ~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~-------~~~s~-~~--~~~~i~~~l~~g~~~nvA~~~~ 1144 (1283)
.+....+...||..|||..++|..++.+|.||..++...++ .+... .. ....++..||+||.++||+.-.
T Consensus 881 a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~ 960 (1172)
T KOG0926|consen 881 AAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVD 960 (1172)
T ss_pred HHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88877777789999999999999999999999999875433 11111 11 2346899999999999999766
Q ss_pred cceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcchhhhhh-hccccCHHHHHhhCCcccccc
Q 000790 1145 VGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQ-CATAVEPQWLSELGPMFFSVK 1210 (1283)
Q Consensus 1145 ~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~tsk~y~r-~vt~I~p~wL~e~~p~~~~~~ 1210 (1283)
.-.|-.+.-+.+++|||+|+|++ ..|+||||.|++.|...||. +||.|+|+||..+++.|..+.
T Consensus 961 ~~~y~~~~i~~~~fl~~~svl~~--~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~ 1025 (1172)
T KOG0926|consen 961 ATEYDAAKIQEPVFLHRWSVLIN--SAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFS 1025 (1172)
T ss_pred ccccchhhhcCceeeeehhhhhc--cCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccc
Confidence 66687777778899999999997 57999999999999887765 699999999999887554443
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=5.6e-107 Score=1000.88 Aligned_cols=636 Identities=36% Similarity=0.598 Sum_probs=566.6
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecchHHHHHHHHHH
Q 000790 572 FAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKR 649 (1283)
Q Consensus 572 ~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~LA~qvakr 649 (1283)
..+++++++.|..||+|.++++||++|.+++++||+|+||||||||+||||++..+.. ...|+||||||+.|+++|+|
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999976543 34799999999999999999
Q ss_pred HHHHhccccCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC
Q 000790 650 VSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 650 Va~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~ 729 (1283)
|+.|.+..+|..|||+||.+...+..|.|.|||+|+||+.++.++.+.+++|||+||+|||++++||++.++|.++..+|
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccCcCHHHHHHHhCCCCeEeecCcccceeeeecCCCh----------hhH---------------------HH
Q 000790 730 DFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPC----------EDY---------------------VE 778 (1283)
Q Consensus 730 dlklIlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~----------~dy---------------------v~ 778 (1283)
++|+|+||||+|++.|++||+++|+++|+|++|||..+|..... ..+ .+
T Consensus 319 ~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 319 DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 99999999999999999999999999999999999998753110 000 11
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCee
Q 000790 779 AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRK 858 (1283)
Q Consensus 779 ~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rK 858 (1283)
.....+..|+.....|.||||+||..+|..++..|..... ..+...+.++|+||.|+..+|+.||...+.|.+|
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~------f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLP------FADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccc------cccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 1222333445556689999999999999999988864210 1122468999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCC
Q 000790 859 CIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLP 938 (1283)
Q Consensus 859 VLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~ 938 (1283)
||+||||||+|||||+|.||||+|++|++.|||..+++.|...|+|++++.||+|||||+.+|+||+||+...|...+..
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~ 552 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLA 552 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777777
Q ss_pred CCcchhhccchhHHHHHHhhcccCcccCC--CCCCCCChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHH
Q 000790 939 SPVPEIQRTNLGNVVLLLKSLKIDNLLDF--DFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKM 1016 (1283)
Q Consensus 939 ~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f--~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ 1016 (1283)
+++|||+|++|.++||++|.+++..+..| ..+|||+.+++..|+..|..+|||+.+.+||+||+.|+.||+||.+|||
T Consensus 553 ~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ 632 (924)
T KOG0920|consen 553 YQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKL 632 (924)
T ss_pred cCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchh
Confidence 99999999999999999999998887766 5799999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHHHHHHHHhhccc-CccHHHHHHHHHHHHhhcc-----chhhhHhhc
Q 000790 1017 LLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQ-ESDHLTLLYVYQQWKEHQY-----RGDWCEEHY 1090 (1283)
Q Consensus 1017 Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~-~sDhltll~vf~~w~~~~~-----~~~wc~~~~ 1090 (1283)
|+.|+.|+|++++++|||+|+++++|+.|.++.+.+++++..|... .||||+++++|+.|..... ..+||.+||
T Consensus 633 ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~f 712 (924)
T KOG0920|consen 633 LLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENF 712 (924)
T ss_pred heehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888755 5999999999999987543 359999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcCCCCCC------------CCCChHHHHHHHHhcccchhhhhcc---cceeeeecCC-
Q 000790 1091 LHVKSLRKAREVRSQLLDILKTLKIPLTS------------SGHDFDVVRKAICSAYFHNAARLKG---VGEYINCRNG- 1154 (1283)
Q Consensus 1091 l~~~~l~~a~~ir~qL~~~l~~~~~~~~s------------~~~~~~~i~~~l~~g~~~nvA~~~~---~g~y~~~~~~- 1154 (1283)
|+..+|+++..++.|+...|..+++...+ +..++++++++||+|||||+|+... ...-+...++
T Consensus 713 Ls~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~ 792 (924)
T KOG0920|consen 713 LSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKA 792 (924)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCC
Confidence 99999999999999999999998874321 2347889999999999999998763 2212222233
Q ss_pred -cceeeCCCCcccCC-CCCCCceeeehhhcchh-hhhhhccccCHHHHHhhCCcccccccCc
Q 000790 1155 -MPCHLHPSSAIYGL-GYTPEYVVYHELILTTK-EYMQCATAVEPQWLSELGPMFFSVKDSD 1213 (1283)
Q Consensus 1155 -~~v~lHPsS~l~~~-~~~p~~vvy~el~~tsk-~y~r~vt~I~p~wL~e~~p~~~~~~~~~ 1213 (1283)
..+++||+|+.+.. ....+|++|+|.+.|++ .|+|++|.|.+.-+..++...+.+...+
T Consensus 793 ~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~~~~~ 854 (924)
T KOG0920|consen 793 DGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTVRMKS 854 (924)
T ss_pred ceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceeecCCC
Confidence 36999999998764 34455999999999999 9999999999999999988666444433
No 10
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.1e-92 Score=885.52 Aligned_cols=566 Identities=31% Similarity=0.483 Sum_probs=496.2
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeee
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VG 663 (1283)
.|||+.+..+|+++|.+++++||+|+|||||||++|+++++.... .++|+|++|||++|+|++++|+++++..+|..||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 499999999999999999999999999999999999999987654 4689999999999999999999999999999999
Q ss_pred EEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCcCH
Q 000790 664 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNA 742 (1283)
Q Consensus 664 y~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATld~ 742 (1283)
|.+++++..+..+.|+|+|+|+|++++..++.|.+|++|||||||||++++|+++++++.++. .++++|+|+||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999988899999999999999999999999999999999999999999999999988865 4789999999999999
Q ss_pred HHHHHHhCCCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhc
Q 000790 743 QKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLIS 822 (1283)
Q Consensus 743 e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~ 822 (1283)
+.|++||++++++.++|+.|||+.+|...+..+++...+..++...+....|+|||||||+.+|+.+++.|.+.+
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~----- 236 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRV----- 236 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999998877777776655555555555567999999999999999999997532
Q ss_pred cccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccc
Q 000790 823 STTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFP 902 (1283)
Q Consensus 823 ~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~P 902 (1283)
..++.++++||+|+.++|.++|..|++|.++|||||||||+|||||+|+||||+|+.|...||+.+|++.|.+.|
T Consensus 237 -----~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 237 -----ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred -----cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 136889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHH
Q 000790 903 VSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSM 982 (1283)
Q Consensus 903 iS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al 982 (1283)
||+++|.||+|||||.++|+||+||++..| ..|.+++.|||++++|++++|.++++|+.++..|+|+|||+..++.+|+
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~ 390 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSKEQA-ERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAK 390 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCHHHH-hhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999998 5699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchH--HHHHHHHHhcCCCcccCChhhHHHHHHHHHhhc
Q 000790 983 YQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLD--EVLTIVSMLSVPSVFFRPKDRAEESDAAREKFF 1060 (1283)
Q Consensus 983 ~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~--e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~ 1060 (1283)
..|+.+||||++|+||++|+.|+.||++|++|+|||.|+.++|.. .++.|+|+|+.+.. ..
T Consensus 391 ~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-----~~------------ 453 (812)
T PRK11664 391 RLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-----SG------------ 453 (812)
T ss_pred HHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-----CC------------
Confidence 999999999999999999999999999999999999999998753 56777777776521 00
Q ss_pred ccCccHHHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccchhh
Q 000790 1061 VQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAA 1140 (1283)
Q Consensus 1061 ~~~sDhltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l~~g~~~nvA 1140 (1283)
.+|....|..+. ..|+ ..+..+.+||.... + . .+++.+..|||+||+++||
T Consensus 454 --~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~-~-----~~~~~~~~~la~aypdriA 504 (812)
T PRK11664 454 --SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G-E-----ADSSLIAPLLALAFPDRIA 504 (812)
T ss_pred --cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c-c-----CChHHHHHHHHHHCHHHHh
Confidence 234333333221 1342 23444555553311 1 1 1345688999999999999
Q ss_pred hhcccceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcch-h--hhhhhccccCHHHHHhhCCccccccc
Q 000790 1141 RLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTT-K--EYMQCATAVEPQWLSELGPMFFSVKD 1211 (1283)
Q Consensus 1141 ~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~ts-k--~y~r~vt~I~p~wL~e~~p~~~~~~~ 1211 (1283)
+.++.+.|..+.+|..++|||+|+|++ .+||||+|++.++ + ..|+.+++|++.||.+++|.+|...+
T Consensus 505 ~~r~~~~~~~l~~G~~a~l~~~~~l~~----~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~~ 574 (812)
T PRK11664 505 RRRGQDGRYQLANGMGAMLDADDALSR----HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQSD 574 (812)
T ss_pred hhcCCCCeEEeeCCCeEEECCCCcccC----CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceeee
Confidence 987665556689999999999999986 6999999997663 3 35778999999999999998876543
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.8e-91 Score=875.79 Aligned_cols=573 Identities=31% Similarity=0.464 Sum_probs=499.3
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
|||+.+..+|+++|.+|+++||+|+|||||||+++++|++... .+++|+|++|||++|.|++++|++++++.+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 8999999999999999999999999999999999999998864 356899999999999999999999999999999999
Q ss_pred EEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCcCHH
Q 000790 665 AIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNAQ 743 (1283)
Q Consensus 665 ~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATld~e 743 (1283)
.+++++..+..++|+|+|+|+|++++..++.|++|++|||||||||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999988889999999999999999999999999999999999999999999999888765 57899999999999999
Q ss_pred HHHHHhCCCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhcc
Q 000790 744 KFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISS 823 (1283)
Q Consensus 744 ~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~ 823 (1283)
.|.+||++++++.++|+.|||+++|......+++...+...+...+....|+|||||||+.+|+.++..|.+.+
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~------ 233 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERL------ 233 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhc------
Confidence 99999999999999999999999998776666655544444444444457999999999999999999987532
Q ss_pred ccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCccccccccc
Q 000790 824 TTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPV 903 (1283)
Q Consensus 824 ~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~Pi 903 (1283)
..++.+++|||+|+.++|..+|+.|++|.++|||||||||+|||||+|+||||+|+.|.+.||+.+|++.|.+.||
T Consensus 234 ----~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 309 (819)
T TIGR01970 234 ----DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRI 309 (819)
T ss_pred ----CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEE
Confidence 1378899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHH
Q 000790 904 SRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMY 983 (1283)
Q Consensus 904 S~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al~ 983 (1283)
|+++|.||+|||||.++|+||+||++++| ..|..++.|||++++|+.++|+|+++|+.++..|+|+|||+..++..|+.
T Consensus 310 Skasa~QR~GRAGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~ 388 (819)
T TIGR01970 310 SQASATQRAGRAGRLEPGVCYRLWSEEQH-QRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQ 388 (819)
T ss_pred CHHHHHhhhhhcCCCCCCEEEEeCCHHHH-HhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999988 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHHHHHHHHhhcccC
Q 000790 984 QLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQE 1063 (1283)
Q Consensus 984 ~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~~ 1063 (1283)
.|..+||||.+|+||++|+.|+.||++|++|+||+.|+.+||.+++++|+|||+.++++-. ..
T Consensus 389 ~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-----------------~~ 451 (819)
T TIGR01970 389 LLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-----------------GG 451 (819)
T ss_pred HHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC-----------------Cc
Confidence 9999999999999999999999999999999999999999999999999999999876421 13
Q ss_pred ccHHHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCC-CC-CCCCChHHHHHHHHhcccchhhh
Q 000790 1064 SDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIP-LT-SSGHDFDVVRKAICSAYFHNAAR 1141 (1283)
Q Consensus 1064 sDhltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~-~~-s~~~~~~~i~~~l~~g~~~nvA~ 1141 (1283)
+|....+..+... ....| ..+..+.+||...+ +.. .. ....+.. +..+|+.||.++||+
T Consensus 452 ~d~~~~~~~~~~~-----~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~g~lla~a~pdria~ 512 (819)
T TIGR01970 452 ADLMNRLHRLQQG-----RQGRG----------QRAQQLAKKLRRRL---RFSQADSGAIASHA-LGLLLALAFPDRIAK 512 (819)
T ss_pred ccHHHHHHHHhhc-----chhhH----------HHHHHHHHHHHHHh---CcCcCCCcccccch-HhHHHhhhChHhhee
Confidence 6766666554321 11112 22344555554432 211 10 1111112 667899999999999
Q ss_pred hccc-ceeeeecCCcceeeCCCCcccCCCCCCCceeeehhhcc---hhhhhhhccccCHHHHHhhCCcccccc
Q 000790 1142 LKGV-GEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILT---TKEYMQCATAVEPQWLSELGPMFFSVK 1210 (1283)
Q Consensus 1142 ~~~~-g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t---sk~y~r~vt~I~p~wL~e~~p~~~~~~ 1210 (1283)
.++. |.|. +.+|..+.|+|.|.|.+ .+|+|..++..+ ....|+.+++|++.||.++++..+...
T Consensus 513 ~r~~~~~y~-l~~G~~~~l~~~~~l~~----~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~~~~ 580 (819)
T TIGR01970 513 RRGQPGRYQ-LANGRGAVLSAEDALAR----EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLVVQV 580 (819)
T ss_pred ccCCCCeEE-CCCCCeeEeCCCCcccC----CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHceEE
Confidence 7765 4576 88999999999999986 599999999644 235688999999999999988765433
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1e-62 Score=584.04 Aligned_cols=622 Identities=30% Similarity=0.507 Sum_probs=520.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCC----EEEEecchHHHHHHHHHHH
Q 000790 575 SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG----IVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 575 ~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~----~Il~tqPrR~LA~qvakrV 650 (1283)
...+.++|..|||..+..+|++++.+|.+++|-++||||||||+.|+||+..+.++. .+.++||||+.|++++++|
T Consensus 367 ~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerv 446 (1282)
T KOG0921|consen 367 LDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERV 446 (1282)
T ss_pred hhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHH
Confidence 456889999999999999999999999999999999999999999999998776532 5778999999999999999
Q ss_pred HHHhccccCCeeeEEEeeeeccC-CCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC
Q 000790 651 SEEMDTELGDKVGYAIRFEDVTG-PSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 651 a~e~~~~lG~~VGy~ir~e~~~s-~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~ 729 (1283)
+.+.+..+|..|||++||++.+. +...|.+||.|.|++.+.+ .|..++|+|+||+|||..++||++.+++.+....+
T Consensus 447 a~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 447 ANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYR 524 (1282)
T ss_pred HHhhHHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccch
Confidence 99999999999999999999775 5678999999999998854 48889999999999999999999999999999999
Q ss_pred CceEEEeccCcCHHHHHHHhCCCCeEeecCcccceeeeecCCC-------------------------hhh---------
Q 000790 730 DFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP-------------------------CED--------- 775 (1283)
Q Consensus 730 dlklIlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~-------------------------~~d--------- 775 (1283)
++++++||||+|.+.|..||..+|.+.+.|++|||..+|.... ..+
T Consensus 525 dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~ 604 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNIL 604 (1282)
T ss_pred hhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccc
Confidence 9999999999999999999999999999999999887653210 000
Q ss_pred ----HHH---------------HHHHHHH--HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEE
Q 000790 776 ----YVE---------------AAVKQAM--TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLIL 834 (1283)
Q Consensus 776 ----yv~---------------~~v~~~l--~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il 834 (1283)
|.. ..+...+ .|....-.|.||||+++...|-.+|..|...-. ......+.++
T Consensus 605 ~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~------fg~~~~y~il 678 (1282)
T KOG0921|consen 605 CDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE------FGQANKYEIL 678 (1282)
T ss_pred cChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh------hccchhcccc
Confidence 000 0011111 122233478999999999999999998865421 1344578899
Q ss_pred EecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcc
Q 000790 835 PIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGR 914 (1283)
Q Consensus 835 ~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGR 914 (1283)
++|+.++..+|.+||+..+.|..|||++|||++++|||+++.||||++.++.+.|-....|....+.|.|+-+..||.||
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred cchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCC--CCCCCCChhhHHHHHHHHHHhcccc
Q 000790 915 AGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDF--DFMDPPPQENILNSMYQLWVLGALN 992 (1283)
Q Consensus 915 AGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f--~fldpP~~~~i~~al~~L~~lgaLd 992 (1283)
+||..+|.||+|.+...| +.+..+-.||+.+++|..+.|.+|.+.+..+..| ..+.||+.+++..+-..|..++++|
T Consensus 759 ~grvR~G~~f~lcs~arF-~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld 837 (1282)
T KOG0921|consen 759 AGRVRPGFCFHLCSRARF-EALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALD 837 (1282)
T ss_pred CceecccccccccHHHHH-HHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhh
Confidence 999999999999999998 5688899999999999999999888766655555 5689999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHHHHHHHHhhccc------CccH
Q 000790 993 NVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQ------ESDH 1066 (1283)
Q Consensus 993 ~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~------~sDh 1066 (1283)
.++.||+||+.++.+|+.|.++||++.+..++|..-|+..|+.++.+.+|+.-..........+.+|.+. .+||
T Consensus 838 ~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~ 917 (1282)
T KOG0921|consen 838 ANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVS 917 (1282)
T ss_pred ccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999998877763111000111123334432 3555
Q ss_pred HHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCC--------CCCC--CChHHHHHHHHhccc
Q 000790 1067 LTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPL--------TSSG--HDFDVVRKAICSAYF 1136 (1283)
Q Consensus 1067 ltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~--------~s~~--~~~~~i~~~l~~g~~ 1136 (1283)
.+++.+|+.|.-.....+||..++++...|......+.||+++|+++.++- .-++ .+.+.++..||.++|
T Consensus 918 v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~ly 997 (1282)
T KOG0921|consen 918 VIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALY 997 (1282)
T ss_pred hhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcC
Confidence 555666666665555569999999999999999999999999999876642 1112 245678889999999
Q ss_pred chhhhhcccceeeeecCCcceeeCCCCccc--C---CCCCCCceeeehhhcchhhhhhhccccCHHHHHhhCCcc
Q 000790 1137 HNAARLKGVGEYINCRNGMPCHLHPSSAIY--G---LGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMF 1206 (1283)
Q Consensus 1137 ~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~--~---~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~~p~~ 1206 (1283)
+|+|...+...-++ .++...-||-+|++- . +.++.+|+||.|.+.|.-.-....|.|.|-.|.-+|..-
T Consensus 998 pn~~~y~ekrkvLt-Te~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrK 1071 (1282)
T KOG0921|consen 998 PNVAYYVEKRKVLT-TEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRK 1071 (1282)
T ss_pred CccceeccceeEEe-ecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhh
Confidence 99998766554443 345556677666653 2 357789999999999988888889999999998887543
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-57 Score=559.19 Aligned_cols=391 Identities=23% Similarity=0.337 Sum_probs=316.4
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHh-----ccc---------CCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED-----GYT---------TNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~-----~~~---------~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
.+|+++++.+.+++++|++|+||||||+|+||+|++. ++. ..+.|+|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999874 111 23589999999999999999997766
Q ss_pred ccccCCeeeEEEeeeeccCC-------CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh
Q 000790 655 DTELGDKVGYAIRFEDVTGP-------STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 727 (1283)
Q Consensus 655 ~~~lG~~VGy~ir~e~~~s~-------~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~ 727 (1283)
+......+.+.+++.+.... ...|+++|+++. .+.|.++++|||||||||+..+|+++++++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 64322223345666654321 346888987642 34689999999999999999999999999877543
Q ss_pred cCCceEEEeccCc--CHHHHHHHhCCCCeEeecCcc-cceeeeecCCCh-----hhHHHHHHHHHHHHhhc---CCCCCE
Q 000790 728 RRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRT-FPVNTLYSKTPC-----EDYVEAAVKQAMTIHIT---SPPGDI 796 (1283)
Q Consensus 728 r~dlklIlmSATl--d~e~fa~~f~~~pvi~i~gr~-~pV~i~y~~~~~-----~dyv~~~v~~~l~i~~~---~~~G~I 796 (1283)
. .|+|+||||+ +.+.|.+||++++++.++|++ +||+.+|..... .+|+......++.++.. ...+++
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 2 3899999999 577899999999999999986 999999875432 23333332233333221 245799
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHh-cCCCeeEEEecCcccccCCCCCe
Q 000790 797 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKA-KEGTRKCIVATNIAETSLTVDGI 875 (1283)
Q Consensus 797 LVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f-~~G~rKVLVATnIAEtGIdIp~V 875 (1283)
||||||+.+|+.++..|.+.+ +++.+++|||+|++.+ .+++.| ++|.++|||||||||+|||||+|
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-----------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V 465 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-----------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNA 465 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-----------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCe
Confidence 999999999999999886531 3688999999999863 455555 78999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccc---hhHH
Q 000790 876 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTN---LGNV 952 (1283)
Q Consensus 876 ~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~---L~~v 952 (1283)
++|||+|+++.. ++..|++ .|+|+++|.||+|||||+++|.||+||+++.+ .| |.+.+ |..+
T Consensus 466 ~~VID~G~~k~p--~~~~g~~----~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L~~~ 530 (675)
T PHA02653 466 THVYDTGRVYVP--EPFGGKE----MFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFLHNY 530 (675)
T ss_pred eEEEECCCccCC--CcccCcc----cccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHHHHH
Confidence 999999988765 3555653 69999999999999999999999999999874 23 55555 8999
Q ss_pred HHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcccccCCCCCHH--HHHHHhCCCChHHHHHHHhhhh
Q 000790 953 VLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDL--GWKMVEFPLDPPLAKMLLMGEQ 1022 (1283)
Q Consensus 953 vL~Lk~lgi~~l~~f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~l--G~~ma~lPldp~lak~Ll~~~~ 1022 (1283)
+|++|+||++.. .+.|+|||+.+++..|++.|..+||+|+ +||.| |+.|+.+ ++||+++.|+.
T Consensus 531 vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 531 ILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999999999544 4569999999999999999999998865 79999 9999999 99999988854
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-42 Score=432.70 Aligned_cols=425 Identities=19% Similarity=0.176 Sum_probs=296.5
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
..++++|.++++.+.+++++||++|||||||+++.+++++.... ++++++++|+++||.|+++.+.. +. .+|..|++
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~-l~-~~g~~v~~ 97 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSR-LR-SLGMRVKI 97 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHH-Hh-hcCCeEEE
Confidence 45799999999999999999999999999999999998887544 56788889999999999999865 32 35666766
Q ss_pred EEeeeecc---CCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCCcCCc--chhHHHHHHHHHHHhcCCceEEEecc
Q 000790 665 AIRFEDVT---GPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSL--STDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 665 ~ir~e~~~---s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHERsl--~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
.+...+.. .....|+++|++.+...+...+ .+.++++|||||||..+- ....+..++..+...++++++|+|||
T Consensus 98 ~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSA 177 (674)
T PRK01172 98 SIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSA 177 (674)
T ss_pred EeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeC
Confidence 54322211 1357899999998877665544 388999999999996421 12233444555545567899999999
Q ss_pred Cc-CHHHHHHHhCCCCeEeecCcccceeee--ecCCChh-hHH--HHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 000790 739 TL-NAQKFSDFFGSVPIFHIPGRTFPVNTL--YSKTPCE-DYV--EAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 812 (1283)
Q Consensus 739 Tl-d~e~fa~~f~~~pvi~i~gr~~pV~i~--y~~~~~~-dyv--~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~ 812 (1283)
|+ |+..+++|++. +.+....+.+|+.+. +...... ... ...+...+.. ....++++||||+++++++.++..
T Consensus 178 Tl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~vLVF~~sr~~~~~~a~~ 255 (674)
T PRK01172 178 TVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKE-TVNDGGQVLVFVSSRKNAEDYAEM 255 (674)
T ss_pred ccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHH-HHhCCCcEEEEeccHHHHHHHHHH
Confidence 99 89999999974 455556666666532 2111100 000 0001111111 123578999999999999999999
Q ss_pred HHHHHHHhhccc-----c-------CCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEE
Q 000790 813 LKERMEQLISST-----T-------REVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVID 880 (1283)
Q Consensus 813 L~e~l~~l~~~~-----~-------~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VID 880 (1283)
|.+.+....... . .......|..+||+|+.++|..|++.|++|.++|||||+++++|||+|+..+||+
T Consensus 256 L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~ 335 (674)
T PRK01172 256 LIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR 335 (674)
T ss_pred HHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc
Confidence 877543211000 0 0001235889999999999999999999999999999999999999999887774
Q ss_pred cCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEecC-hh---hhhhhcCCCCcc--------hhh
Q 000790 881 TGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYT-ES---AYLNEMLPSPVP--------EIQ 945 (1283)
Q Consensus 881 sGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt-~~---~~~~~m~~~~~P--------EI~ 945 (1283)
+. ..|+. ....|+|..+|.||+|||||.| .|.|+.+.. .. .+...+...+.| ++.
T Consensus 336 -~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~ 405 (674)
T PRK01172 336 -DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKV 405 (674)
T ss_pred -Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccH
Confidence 22 23332 2235899999999999999998 477776643 22 222223222222 333
Q ss_pred ccchhHHHHHHhhcccCcccCC---CCC--CCCC---hhhHHHHHHHHHHhcccccCC--CCCHHHHHHHhCCCChHHHH
Q 000790 946 RTNLGNVVLLLKSLKIDNLLDF---DFM--DPPP---QENILNSMYQLWVLGALNNVG--ALTDLGWKMVEFPLDPPLAK 1015 (1283)
Q Consensus 946 r~~L~~vvL~Lk~lgi~~l~~f---~fl--dpP~---~~~i~~al~~L~~lgaLd~~g--~LT~lG~~ma~lPldp~lak 1015 (1283)
+.++...+......+..++..| .|+ +.++ .+.+..+++.|...|+|+.++ .+|++|++++.+||+|..++
T Consensus 406 ~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~ 485 (674)
T PRK01172 406 RFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESAL 485 (674)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHH
Confidence 3333333333333334555544 454 4332 467899999999999998654 67999999999999999999
Q ss_pred HHHhhhhcC
Q 000790 1016 MLLMGEQLG 1024 (1283)
Q Consensus 1016 ~Ll~~~~~g 1024 (1283)
+++.+..-.
T Consensus 486 ~~~~~l~~~ 494 (674)
T PRK01172 486 ILKSAFDHD 494 (674)
T ss_pred HHHHHhhcc
Confidence 998876543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-39 Score=413.81 Aligned_cols=518 Identities=18% Similarity=0.199 Sum_probs=332.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHH-HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 577 TLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~-I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
+.+..+..--++++|.++++. +.+++++|+++|||||||+++.++++.... .++++++++|+++||.|+++.+.. ++
T Consensus 14 ~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~-~~ 91 (737)
T PRK02362 14 EFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFER-FE 91 (737)
T ss_pred HHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHH-hh
Confidence 344444455688999999998 789999999999999999999999888764 467899999999999999999964 43
Q ss_pred cccCCeeeEEEeeeec---cCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCC--cchhHHHHHHHHHHHhcC
Q 000790 656 TELGDKVGYAIRFEDV---TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERS--LSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 656 ~~lG~~VGy~ir~e~~---~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERs--l~tD~ll~lLk~il~~r~ 729 (1283)
.+|..|+......+. ......|+++|++.+...+... ..+.++++|||||+|.-+ -....+..++..+....+
T Consensus 92 -~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 92 -ELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred -cCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 235555432221111 1235789999999987665433 347899999999999421 112233344555555567
Q ss_pred CceEEEeccCc-CHHHHHHHhCCCCeEeecCcccceeee--e------cC----CChhhHHHHHHHHHHHHhhcCCCCCE
Q 000790 730 DFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTL--Y------SK----TPCEDYVEAAVKQAMTIHITSPPGDI 796 (1283)
Q Consensus 730 dlklIlmSATl-d~e~fa~~f~~~pvi~i~gr~~pV~i~--y------~~----~~~~dyv~~~v~~~l~i~~~~~~G~I 796 (1283)
++|+|+||||+ |++.+++|++.. .+....+..++... + .. ...... ...+..+.... ...+++
T Consensus 171 ~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~ 246 (737)
T PRK02362 171 DLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTL--EEGGQC 246 (737)
T ss_pred CCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHHHHH--HcCCCe
Confidence 89999999999 899999999743 22222232232211 1 10 000000 11222222222 357899
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhh----------------cccc-------CCCCCeEEEEecCCCCHHHHHHHHhHhc
Q 000790 797 LIFMTGQDEIEAACFALKERMEQLI----------------SSTT-------REVPELLILPIYSQLPADLQAKIFEKAK 853 (1283)
Q Consensus 797 LVFl~g~~eIe~l~~~L~e~l~~l~----------------~~~~-------~~~~~l~Il~LHs~L~~~er~~I~~~f~ 853 (1283)
||||+++.+++.++..|...+.... .... ...-...|.++||+|+..+|..|++.|+
T Consensus 247 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr 326 (737)
T PRK02362 247 LVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFR 326 (737)
T ss_pred EEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHH
Confidence 9999999999999998876543100 0000 0001246899999999999999999999
Q ss_pred CCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEecChh
Q 000790 854 EGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 930 (1283)
Q Consensus 854 ~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~~ 930 (1283)
+|.++|||||+++++|||+|++.+||+. ...||+..|+ .|++..+|.||+|||||.| .|.||.++...
T Consensus 327 ~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 327 DRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred cCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999963 4568876554 5899999999999999998 39999998653
Q ss_pred ----hhhhhcCCCCcchhhcc------chhHHHHHHhhccc----CcccCC---CCCCCCC------hhhHHHHHHHHHH
Q 000790 931 ----AYLNEMLPSPVPEIQRT------NLGNVVLLLKSLKI----DNLLDF---DFMDPPP------QENILNSMYQLWV 987 (1283)
Q Consensus 931 ----~~~~~m~~~~~PEI~r~------~L~~vvL~Lk~lgi----~~l~~f---~fldpP~------~~~i~~al~~L~~ 987 (1283)
.+...+.. ..|+...+ .|...+|...+.|. .++..| .|+..+. .+.+..+++.|..
T Consensus 398 ~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~ 476 (737)
T PRK02362 398 DELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLER 476 (737)
T ss_pred hhHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHH
Confidence 12122221 12222222 34445555555442 232222 4443332 2458899999999
Q ss_pred hcccccCCC---CCHHHHHHHhCCCChHHHHHHHhhhhcC---chHHHHHHHHHhcC-CCcccCChhhHHHHHHHHH---
Q 000790 988 LGALNNVGA---LTDLGWKMVEFPLDPPLAKMLLMGEQLG---CLDEVLTIVSMLSV-PSVFFRPKDRAEESDAARE--- 1057 (1283)
Q Consensus 988 lgaLd~~g~---LT~lG~~ma~lPldp~lak~Ll~~~~~g---c~~e~l~I~a~ls~-~~~f~~p~~~~~~~~~~r~--- 1057 (1283)
.|+|+.++. +|++|++++.++|+|..+..++.+.... ....+|.+++.... ..+.+++.+..........
T Consensus 477 ~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~ 556 (737)
T PRK02362 477 NGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHED 556 (737)
T ss_pred CCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhccc
Confidence 999987654 8999999999999999999998876532 22334444442221 2233333221111110000
Q ss_pred hhc--cc----CccH------HHHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHH
Q 000790 1058 KFF--VQ----ESDH------LTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILK 1111 (1283)
Q Consensus 1058 ~f~--~~----~sDh------ltll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~ 1111 (1283)
.+. .+ ..++ +-..-+.+.|.+...-...+..+.|....|+.+.+...+|+..+.
T Consensus 557 ~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~ 622 (737)
T PRK02362 557 ELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAE 622 (737)
T ss_pred chhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 010 01 1121 112334567765544455667777777777666555555554443
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-37 Score=391.41 Aligned_cols=518 Identities=17% Similarity=0.166 Sum_probs=320.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH-HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 576 KTLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~-I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
.+.++.+..--.+++|.++++. +.+++++|+++|||||||+++.++++......++++++++|+++||.|+++++.. +
T Consensus 13 ~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~-~ 91 (720)
T PRK00254 13 KRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD-W 91 (720)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH-H
Confidence 4445555666688999999986 8999999999999999999999999887766678999999999999999998864 3
Q ss_pred ccccCCeeeEEEeeee---ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCc-ch-hHHHHHHHHHHHhc
Q 000790 655 DTELGDKVGYAIRFED---VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSL-ST-DVLFGILKKVVARR 728 (1283)
Q Consensus 655 ~~~lG~~VGy~ir~e~---~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl-~t-D~ll~lLk~il~~r 728 (1283)
. .+|..|+......+ .......|+++|++.+...+... ..+.++++|||||+|.-+- .. ..+..++. ...
T Consensus 92 ~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~---~l~ 167 (720)
T PRK00254 92 E-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILT---HML 167 (720)
T ss_pred h-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHH---hcC
Confidence 2 34555553322111 11235789999999987665433 4588999999999995221 11 12222222 234
Q ss_pred CCceEEEeccCc-CHHHHHHHhCCCCeEeecCcccceee--eecC-----CC-hhhHHHHHHHHHHHHhhcCCCCCEEEE
Q 000790 729 RDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNT--LYSK-----TP-CEDYVEAAVKQAMTIHITSPPGDILIF 799 (1283)
Q Consensus 729 ~dlklIlmSATl-d~e~fa~~f~~~pvi~i~gr~~pV~i--~y~~-----~~-~~dyv~~~v~~~l~i~~~~~~G~ILVF 799 (1283)
.+.++|+||||+ |+..+++|++.. .+....+..|+.. ++.. .. ...+.......+... ...++++|||
T Consensus 168 ~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~vLVF 244 (720)
T PRK00254 168 GRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDA--VKKGKGALVF 244 (720)
T ss_pred cCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHH--HHhCCCEEEE
Confidence 578999999999 899999999753 3333344444321 1111 10 001111111111111 1236789999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccc---------------c-----CCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeE
Q 000790 800 MTGQDEIEAACFALKERMEQLISST---------------T-----REVPELLILPIYSQLPADLQAKIFEKAKEGTRKC 859 (1283)
Q Consensus 800 l~g~~eIe~l~~~L~e~l~~l~~~~---------------~-----~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKV 859 (1283)
|+++..++.++..|...+....... . .......|.++||+|++++|..|++.|++|.++|
T Consensus 245 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~V 324 (720)
T PRK00254 245 VNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKV 324 (720)
T ss_pred EcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeE
Confidence 9999999998887765432111000 0 0001246999999999999999999999999999
Q ss_pred EEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEecChhh---hh
Q 000790 860 IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESA---YL 933 (1283)
Q Consensus 860 LVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~~~---~~ 933 (1283)
||||+++++|||+|++.+||... ..|+ ..|+ .+++..+|.||+|||||.| .|.||.+.+... +.
T Consensus 325 LvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~ 394 (720)
T PRK00254 325 ITATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLM 394 (720)
T ss_pred EEeCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHH
Confidence 99999999999999999999532 3454 2222 3566789999999999986 499999886432 22
Q ss_pred hhcCCCCcchhhcc------chhHHHHHHhhcc-cCc---c---cC--CCCCCCCC----hhhHHHHHHHHHHhcccccC
Q 000790 934 NEMLPSPVPEIQRT------NLGNVVLLLKSLK-IDN---L---LD--FDFMDPPP----QENILNSMYQLWVLGALNNV 994 (1283)
Q Consensus 934 ~~m~~~~~PEI~r~------~L~~vvL~Lk~lg-i~~---l---~~--f~fldpP~----~~~i~~al~~L~~lgaLd~~ 994 (1283)
..+.. ..||-... .|...+|...+.+ +.+ + +. |-|...|+ .+.+..++..|...++|..+
T Consensus 395 ~~~~~-~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~ 473 (720)
T PRK00254 395 ERYIF-GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDID 473 (720)
T ss_pred HHHHh-CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEc
Confidence 22211 11221111 1222333333332 221 1 11 22222233 35677889999999999643
Q ss_pred ----CCCCHHHHHHHhCCCChHHHHHHHhhhhc----CchHHHHHHHHHhcC-CCcccCChhhHHHH---HHHHHhhc--
Q 000790 995 ----GALTDLGWKMVEFPLDPPLAKMLLMGEQL----GCLDEVLTIVSMLSV-PSVFFRPKDRAEES---DAAREKFF-- 1060 (1283)
Q Consensus 995 ----g~LT~lG~~ma~lPldp~lak~Ll~~~~~----gc~~e~l~I~a~ls~-~~~f~~p~~~~~~~---~~~r~~f~-- 1060 (1283)
..+|++|++++.++|+|..++++..+..- .....+|.+++.... .++..+..+...-. .....++.
T Consensus 474 ~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~ 553 (720)
T PRK00254 474 LEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFN 553 (720)
T ss_pred CCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhccccccc
Confidence 25699999999999999999999876532 344455555543322 12222222111100 00000111
Q ss_pred cc--C-ccHH------HHHHHHHHHHhhccchhhhHhhccChHHHHHHHHHHHHHHHHHHh
Q 000790 1061 VQ--E-SDHL------TLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKT 1112 (1283)
Q Consensus 1061 ~~--~-sDhl------tll~vf~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~ 1112 (1283)
.+ . .|+- -..-+.+.|.+...-..-+..+.+....++.+.+...+|+..+..
T Consensus 554 ~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~ 614 (720)
T PRK00254 554 IPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIE 614 (720)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 11 0 1222 223445667654433445556667777777666666666555433
No 17
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-39 Score=359.77 Aligned_cols=309 Identities=20% Similarity=0.273 Sum_probs=249.8
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC--CEEEEecchHHHHHHHHHHHHHHhccccCCeee
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VG 663 (1283)
-..++|.++|+.++.|++||+.|+||||||.+|.++|+...+... ..++|+.|+|+||.|++..+ +.+|..+|..|.
T Consensus 83 ~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~ 161 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVA 161 (476)
T ss_pred CCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEE
Confidence 456899999999999999999999999999999999999888754 47899999999999999988 667777777776
Q ss_pred EEEeeeec------cCCCceEEEechhHHHHHHccC--CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEE
Q 000790 664 YAIRFEDV------TGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 735 (1283)
Q Consensus 664 y~ir~e~~------~s~~t~I~~~T~G~LLr~ll~d--~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIl 735 (1283)
..+.+.+. .....+|+++|||.|..++.+. ..|..+.++|+|||+ |.++.||...+=+.+-...++.+.++
T Consensus 162 ~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~L 240 (476)
T KOG0330|consen 162 VLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFL 240 (476)
T ss_pred EEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEE
Confidence 66666552 2467889999999999998743 458899999999999 99999997766655555677899999
Q ss_pred eccCc--CHHHHHHHhCCCCeEeecCcccc----eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHH
Q 000790 736 TSATL--NAQKFSDFFGSVPIFHIPGRTFP----VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAA 809 (1283)
Q Consensus 736 mSATl--d~e~fa~~f~~~pvi~i~gr~~p----V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l 809 (1283)
+|||| .+.++...-...|+-......|. +...|...+..+ -+..+..++. ...++.+||||++....+.+
T Consensus 241 fsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yLV~ll~---e~~g~s~iVF~~t~~tt~~l 316 (476)
T KOG0330|consen 241 FSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVYLLN---ELAGNSVIVFCNTCNTTRFL 316 (476)
T ss_pred EEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhHHHHHH---hhcCCcEEEEEeccchHHHH
Confidence 99999 57777765555555333222222 233343332211 1111111111 12358899999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceec
Q 000790 810 CFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVY 889 (1283)
Q Consensus 810 ~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~y 889 (1283)
+-.|.. .++.+++|||+|++..|.-+|+.|+.|.+.|||||++|.+|+|||.|++||| |
T Consensus 317 a~~L~~-------------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------y 375 (476)
T KOG0330|consen 317 ALLLRN-------------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------Y 375 (476)
T ss_pred HHHHHh-------------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------c
Confidence 888865 3899999999999999999999999999999999999999999999999999 9
Q ss_pred cCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhh
Q 000790 890 NPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 890 D~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
| .|.+..+|+||+||+||+| +|+++.|.|..+
T Consensus 376 D----------iP~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 376 D----------IPTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred C----------CCCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 9 8999999999999999999 699999999843
No 18
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=374.68 Aligned_cols=324 Identities=20% Similarity=0.235 Sum_probs=252.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--------CCCEEEEecchHHHHHHHH
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVA 647 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~LA~qva 647 (1283)
..++..+..--.+++|.+.++.++.++++|.++.||||||+.|+++++.+... .++.++|+.|||+||.|+.
T Consensus 103 ~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~ 182 (519)
T KOG0331|consen 103 MKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQ 182 (519)
T ss_pred HHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHH
Confidence 34555666666789999999999999999999999999999999888776543 2468999999999999999
Q ss_pred HHHHHHhccccC--CeeeEEE-eee---eccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHH
Q 000790 648 KRVSEEMDTELG--DKVGYAI-RFE---DVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGI 720 (1283)
Q Consensus 648 krVa~e~~~~lG--~~VGy~i-r~e---~~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~l 720 (1283)
+.+ .+++..++ ..+-|+- ... .....+..|+++|||.|+.++... -.|++++++|||||+ |+++++|-..+
T Consensus 183 ~~~-~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI 260 (519)
T KOG0331|consen 183 AEA-REFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQI 260 (519)
T ss_pred HHH-HHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHH
Confidence 887 55555555 2222210 000 122346789999999999998654 469999999999999 99999998888
Q ss_pred HHHHHHh-cCCceEEEeccCc--CHHHHHHHhCCCCeEeecCccc--cee--eeecCCChhh-HHHHHHHHHHHHhhcCC
Q 000790 721 LKKVVAR-RRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTF--PVN--TLYSKTPCED-YVEAAVKQAMTIHITSP 792 (1283)
Q Consensus 721 Lk~il~~-r~dlklIlmSATl--d~e~fa~~f~~~pvi~i~gr~~--pV~--i~y~~~~~~d-yv~~~v~~~l~i~~~~~ 792 (1283)
-+.+... +++.++|+.|||. .+..|+.-|.+.|+-..-|..- ... +...-..+.. -....+..++..+....
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~ 340 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDS 340 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccC
Confidence 8887777 6666899999999 4677777665566543333211 100 0000011111 11223344444444667
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCC
Q 000790 793 PGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTV 872 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdI 872 (1283)
.+++||||.++..|+.+...|... .+.+.+|||.+++.+|..+++.|++|...||||||+|++||||
T Consensus 341 ~~KvIIFc~tkr~~~~l~~~l~~~-------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi 407 (519)
T KOG0331|consen 341 EGKVIIFCETKRTCDELARNLRRK-------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV 407 (519)
T ss_pred CCcEEEEecchhhHHHHHHHHHhc-------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC
Confidence 899999999999999999888652 5889999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 873 DGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 873 p~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|+|++||| || +|.+.++|+||+||+||.| .|.+|.||+...+
T Consensus 408 ~dV~lVIn--------yd----------fP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 408 PDVDLVIN--------YD----------FPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred ccccEEEe--------CC----------CCCCHHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 99999999 88 7999999999999999988 5999999998876
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.4e-37 Score=382.25 Aligned_cols=322 Identities=20% Similarity=0.205 Sum_probs=239.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-------CCCEEEEecchHHHHHHHHH
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-------TNGIVGCTQPRRVAAMSVAK 648 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-------~~~~Il~tqPrR~LA~qvak 648 (1283)
.+.+.....-..+++|.++++.++.++++|+++|||||||++++++++..... .+..++|++|||+||.|+.+
T Consensus 142 ~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~ 221 (545)
T PTZ00110 142 LKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIRE 221 (545)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHH
Confidence 33444455667889999999999999999999999999999988887765432 24579999999999999998
Q ss_pred HHHHHhccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHH
Q 000790 649 RVSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGIL 721 (1283)
Q Consensus 649 rVa~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lL 721 (1283)
.+. .++...+..+........ .......|+|+|||.|++.+... ..|.++++||||||| +.++.+|...+.
T Consensus 222 ~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~ 299 (545)
T PTZ00110 222 QCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIR 299 (545)
T ss_pred HHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHH
Confidence 874 444433333322221111 11235689999999999888654 458999999999999 788888777666
Q ss_pred HHHHHhcCCceEEEeccCcC--HHHHHHHhC-CCCeEeecCcc-----cceeeeecCCChhhHHHHHHHHHHHHhhcCCC
Q 000790 722 KKVVARRRDFKLIVTSATLN--AQKFSDFFG-SVPIFHIPGRT-----FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPP 793 (1283)
Q Consensus 722 k~il~~r~dlklIlmSATld--~e~fa~~f~-~~pvi~i~gr~-----~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~ 793 (1283)
+.+...+++.++|++|||+. ...++..+. ..++....+.. ..+...+..... ......+..++... ....
T Consensus 300 ~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~~L~~ll~~~-~~~~ 377 (545)
T PTZ00110 300 KIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRGKLKMLLQRI-MRDG 377 (545)
T ss_pred HHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHHHHHHHHHHh-cccC
Confidence 66666678999999999994 455665544 34443221111 111111111111 11112222222222 1256
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC
Q 000790 794 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD 873 (1283)
Q Consensus 794 G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp 873 (1283)
+++||||+++..++.++..|.. .++.+..+||++++++|..+++.|+.|..+|||||+++++|||||
T Consensus 378 ~k~LIF~~t~~~a~~l~~~L~~-------------~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 378 DKILIFVETKKGADFLTKELRL-------------DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred CeEEEEecChHHHHHHHHHHHH-------------cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 7999999999999999988854 267789999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 874 GIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 874 ~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
+|++||+ || .|.+.++|+||+|||||.| .|.||.||++.+.
T Consensus 445 ~v~~VI~--------~d----------~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 445 DVKYVIN--------FD----------FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred cCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 9999999 66 6999999999999999999 5999999998654
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.3e-38 Score=359.37 Aligned_cols=367 Identities=19% Similarity=0.239 Sum_probs=286.6
Q ss_pred ccccccccccccccccccccccCccccccchhhhhhhhccccchhhhhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEE
Q 000790 527 NILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVV 606 (1283)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII 606 (1283)
..+..+..+++.+.++..+.++..|.++. ....+++.+|+......+...++..-.+.-..++|.++++..++++++|.
T Consensus 209 rhW~~k~l~Em~~rdwri~redynis~kg-~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~ig 287 (673)
T KOG0333|consen 209 RHWSEKVLAEMTERDWRIFREDYNISIKG-GRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIG 287 (673)
T ss_pred cchhhhhHHhcCCccceeeecceeeeecC-CCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeee
Confidence 45556677788888999999988887754 45667788888887777777788888888888999999999999999999
Q ss_pred EccCCCChHHHHHHHHHHhcc-----------cCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE---EEeeeec-
Q 000790 607 VGETGSGKTTQLTQYLLEDGY-----------TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY---AIRFEDV- 671 (1283)
Q Consensus 607 ~gpTGSGKTtqi~q~Lle~~~-----------~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy---~ir~e~~- 671 (1283)
+++||||||.+++.+|+.... ..++..+++.|||+||.|+...- ..+++.+|..+-- +..++..
T Consensus 288 vaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt-~kf~~~lg~r~vsvigg~s~EEq~ 366 (673)
T KOG0333|consen 288 VAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET-NKFGKPLGIRTVSVIGGLSFEEQG 366 (673)
T ss_pred EEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH-HHhcccccceEEEEecccchhhhh
Confidence 999999999998888775422 12567899999999999998765 5566666644332 3334433
Q ss_pred --cCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-----C--------------
Q 000790 672 --TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-----R-------------- 729 (1283)
Q Consensus 672 --~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-----~-------------- 729 (1283)
.+..+.|+++|||.|+..+-+. ..|+++.+||+|||+ |++++.|-..+.+.+.... |
T Consensus 367 fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 367 FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 4678999999999999887544 348999999999999 8999998888777765431 1
Q ss_pred ------CceEEEeccCcC--HHHHHHHhCCCCe-Eeec--Ccccc-eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEE
Q 000790 730 ------DFKLIVTSATLN--AQKFSDFFGSVPI-FHIP--GRTFP-VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 797 (1283)
Q Consensus 730 ------dlklIlmSATld--~e~fa~~f~~~pv-i~i~--gr~~p-V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~IL 797 (1283)
-.+.+.|||||. ++.++.-+...|+ +.|. |+..| ++.......... ..+.++.+.......+||
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~----k~kkL~eil~~~~~ppiI 521 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE----KRKKLIEILESNFDPPII 521 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH----HHHHHHHHHHhCCCCCEE
Confidence 167899999994 6666654444454 4443 33333 222221111111 233333343334467899
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeE
Q 000790 798 IFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFY 877 (1283)
Q Consensus 798 VFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~ 877 (1283)
||+|+++.|+.++..|.+ .++.+..|||+-++++|..+++.|+.|...|+|||++|++|||||+|.+
T Consensus 522 IFvN~kk~~d~lAk~LeK-------------~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 522 IFVNTKKGADALAKILEK-------------AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred EEEechhhHHHHHHHHhh-------------ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccce
Confidence 999999999999998865 3799999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhh
Q 000790 878 VIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 878 VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 931 (1283)
||| || ++.|...|.||+||+||+|. |+++.|||+.+
T Consensus 589 Vin--------yd----------maksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 589 VIN--------YD----------MAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred eee--------cc----------hhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 999 88 78999999999999999996 99999999876
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.9e-37 Score=373.29 Aligned_cols=318 Identities=20% Similarity=0.218 Sum_probs=239.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecchHHHHHHHHHHHHHHhcc
Q 000790 579 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDT 656 (1283)
Q Consensus 579 ~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~LA~qvakrVa~e~~~ 656 (1283)
+.....-..+++|.++++.+.+++++|++||||||||+++.+++++..... ...++|++|+++||.|+++.+......
T Consensus 19 l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 98 (460)
T PRK11776 19 LNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARF 98 (460)
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 334445567899999999999999999999999999999999998875432 347889999999999999988543321
Q ss_pred ccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC
Q 000790 657 ELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 657 ~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~ 729 (1283)
..+..+.....+.. .....+.|+++|||.|+..+... ..+.++++||||||| +.++..+...+...+....+
T Consensus 99 ~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~ 177 (460)
T PRK11776 99 IPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPA 177 (460)
T ss_pred CCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCc
Confidence 11333322221111 12356789999999999987654 458999999999999 56666665554444444556
Q ss_pred CceEEEeccCc--CHHHHHHHhCCCCe-EeecCc--ccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 000790 730 DFKLIVTSATL--NAQKFSDFFGSVPI-FHIPGR--TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQD 804 (1283)
Q Consensus 730 dlklIlmSATl--d~e~fa~~f~~~pv-i~i~gr--~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~ 804 (1283)
+.++|++|||+ ....+...|...|+ +.+... ...+..+|......+.+ ..+..+.....++++||||+++.
T Consensus 178 ~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~ll~~~~~~~~lVF~~t~~ 253 (460)
T PRK11776 178 RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERL----PALQRLLLHHQPESCVVFCNTKK 253 (460)
T ss_pred ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHH----HHHHHHHHhcCCCceEEEECCHH
Confidence 78999999999 45667776665554 333221 12244444433332322 12222222334678999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCc
Q 000790 805 EIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYG 884 (1283)
Q Consensus 805 eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~ 884 (1283)
.++.++..|.+. ++.+.++||+|++.+|..+++.|++|..+|||||+++++|||||+|++||+
T Consensus 254 ~~~~l~~~L~~~-------------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~---- 316 (460)
T PRK11776 254 ECQEVADALNAQ-------------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN---- 316 (460)
T ss_pred HHHHHHHHHHhC-------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----
Confidence 999999988652 678999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 885 KMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 885 K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|| .|.+..+|+||+|||||.| .|.||.|+++.+.
T Consensus 317 ----~d----------~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 317 ----YE----------LARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ----ec----------CCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 55 6899999999999999999 5999999998654
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-37 Score=369.32 Aligned_cols=318 Identities=19% Similarity=0.216 Sum_probs=232.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc---------CCCEEEEecchHHHHHHHH
Q 000790 577 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSVA 647 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~LA~qva 647 (1283)
+.+.....-..+++|.++++.+..++++|++||||||||+++++++++.... .+..++|++|+|+||.|++
T Consensus 21 ~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 21 EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 3344445566789999999999999999999999999999999888875432 2357999999999999998
Q ss_pred HHHHHHhccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHH
Q 000790 648 KRVSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGI 720 (1283)
Q Consensus 648 krVa~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~l 720 (1283)
+.+ ..+....|..++..+.... .......|+|+||+.|+..+... ..+.++.+||||||| +.++..+...+
T Consensus 101 ~~~-~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i 178 (423)
T PRK04837 101 ADA-EPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDI 178 (423)
T ss_pred HHH-HHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHH
Confidence 877 4444455666655444332 11235689999999999887543 458999999999999 55555544333
Q ss_pred HHHHHHhcC---CceEEEeccCcCH--HHHHHHhCCCCe-EeecCcc---cceeeeecCCChhhHHHHHHHHHHHHhhcC
Q 000790 721 LKKVVARRR---DFKLIVTSATLNA--QKFSDFFGSVPI-FHIPGRT---FPVNTLYSKTPCEDYVEAAVKQAMTIHITS 791 (1283)
Q Consensus 721 Lk~il~~r~---dlklIlmSATld~--e~fa~~f~~~pv-i~i~gr~---~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~ 791 (1283)
+.++...+ ..+.+++|||++. ..+..-+.+.|. +.+.... ..+...+......+ .+..+..+....
T Consensus 179 -~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~ 253 (423)
T PRK04837 179 -RWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE----KMRLLQTLIEEE 253 (423)
T ss_pred -HHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHH----HHHHHHHHHHhc
Confidence 33333333 3457899999953 344333333343 3332211 11211111111111 111222222223
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCC
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 871 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGId 871 (1283)
..+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|..|.++|||||+++++|||
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~-------------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiD 320 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAA-------------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLH 320 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHh-------------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCC
Confidence 467899999999999999888864 2678999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 872 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 872 Ip~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
||+|++||+ || .|.+..+|+||+|||||.| .|.|+.|+++++.
T Consensus 321 ip~v~~VI~--------~d----------~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 321 IPAVTHVFN--------YD----------LPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ccccCEEEE--------eC----------CCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 999999999 77 6899999999999999999 5999999998753
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.3e-36 Score=365.01 Aligned_cols=321 Identities=18% Similarity=0.216 Sum_probs=239.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc------CCCEEEEecchHHHHHHHHHH
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT------TNGIVGCTQPRRVAAMSVAKR 649 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~------~~~~Il~tqPrR~LA~qvakr 649 (1283)
.+.+....+...+++|.++++.+..++++|+++|||||||+++.++++..... ....++|++|+++||.|+++.
T Consensus 13 ~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~ 92 (434)
T PRK11192 13 LEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQ 92 (434)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHH
Confidence 34455566677889999999999999999999999999999998888775432 235899999999999999988
Q ss_pred HHHHhccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCCcCCcchhHHHHHHH
Q 000790 650 VSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILK 722 (1283)
Q Consensus 650 Va~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHERsl~tD~ll~lLk 722 (1283)
+.. +....+..++....... ....+..|+|+|+|.|+..+.... .+.++.+||||||| +.+...+...+..
T Consensus 93 ~~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~ 170 (434)
T PRK11192 93 ARE-LAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIET 170 (434)
T ss_pred HHH-HHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHH
Confidence 743 44445555543332221 123467899999999998876553 48899999999999 6666555444433
Q ss_pred HHHHhcCCceEEEeccCcC---HHHHHHHhCCCCeEe-ecCcc---cceeeeecCCChhhHHHHHHHHHHHHhhcCCCCC
Q 000790 723 KVVARRRDFKLIVTSATLN---AQKFSDFFGSVPIFH-IPGRT---FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGD 795 (1283)
Q Consensus 723 ~il~~r~dlklIlmSATld---~e~fa~~f~~~pvi~-i~gr~---~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ 795 (1283)
.....+...++++||||++ ...|..++...|+.. +.... ..+...|....... .....+..+......++
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---~k~~~l~~l~~~~~~~~ 247 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLE---HKTALLCHLLKQPEVTR 247 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCe
Confidence 3334455679999999995 456666666555432 21111 11222222111111 11222222222335688
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCe
Q 000790 796 ILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI 875 (1283)
Q Consensus 796 ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V 875 (1283)
+||||+++..++.++..|.+ .++.+..+||+|+..+|..+++.|++|..+|||||+++++|||||+|
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~-------------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v 314 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRK-------------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDV 314 (434)
T ss_pred EEEEeCChHHHHHHHHHHHh-------------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCC
Confidence 99999999999999998864 26789999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 876 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 876 ~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
.+||+ || .|.+...|+||+|||||.| .|.|+.|++..++
T Consensus 315 ~~VI~--------~d----------~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 315 SHVIN--------FD----------MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred CEEEE--------EC----------CCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 99999 66 6899999999999999998 5999999987765
No 24
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-36 Score=367.89 Aligned_cols=318 Identities=18% Similarity=0.210 Sum_probs=233.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC--------CCEEEEecchHHHHHHHHHH
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--------NGIVGCTQPRRVAAMSVAKR 649 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~--------~~~Il~tqPrR~LA~qvakr 649 (1283)
.+.....--.+++|.++++.+.+++++|+++|||||||+++.+++++..... ...++|++|+++||.|+.+.
T Consensus 15 ~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 94 (456)
T PRK10590 15 AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGEN 94 (456)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHH
Confidence 3444455567899999999999999999999999999999999988765321 23699999999999999999
Q ss_pred HHHHhccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHH
Q 000790 650 VSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILK 722 (1283)
Q Consensus 650 Va~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk 722 (1283)
+.... ..++..+...+.... .......|+|+||+.|+..+... ..++++++||||||| +.++..+...+..
T Consensus 95 ~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~ 172 (456)
T PRK10590 95 VRDYS-KYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRR 172 (456)
T ss_pred HHHHh-ccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHH
Confidence 86543 233322221111111 12345789999999999887654 358999999999999 6666665544444
Q ss_pred HHHHhcCCceEEEeccCcC--HHHHHHHhCCCCe-EeecCccc---ceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCE
Q 000790 723 KVVARRRDFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDI 796 (1283)
Q Consensus 723 ~il~~r~dlklIlmSATld--~e~fa~~f~~~pv-i~i~gr~~---pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~I 796 (1283)
.+.......++|++|||+. ...+...+...|. +.+..... .+..++...... .....+. .+.......++
T Consensus 173 il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~---~l~~~~~~~~~ 248 (456)
T PRK10590 173 VLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK-RKRELLS---QMIGKGNWQQV 248 (456)
T ss_pred HHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH-HHHHHHH---HHHHcCCCCcE
Confidence 4434456788999999995 4566655544443 33322211 122222211111 1111111 12222345789
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCee
Q 000790 797 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIF 876 (1283)
Q Consensus 797 LVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~ 876 (1283)
||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|+
T Consensus 249 lVF~~t~~~~~~l~~~L~~-------------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~ 315 (456)
T PRK10590 249 LVFTRTKHGANHLAEQLNK-------------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP 315 (456)
T ss_pred EEEcCcHHHHHHHHHHHHH-------------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC
Confidence 9999999999999988864 267889999999999999999999999999999999999999999999
Q ss_pred EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 877 YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 877 ~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
+||+ || .|.+..+|+||+|||||.|. |.|+.|++..+.
T Consensus 316 ~VI~--------~~----------~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 316 HVVN--------YE----------LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred EEEE--------eC----------CCCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 9999 66 68999999999999999994 999999987654
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-36 Score=375.09 Aligned_cols=315 Identities=18% Similarity=0.246 Sum_probs=232.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc---------CCCEEEEecchHHHHHHHHHH
Q 000790 579 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSVAKR 649 (1283)
Q Consensus 579 ~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~LA~qvakr 649 (1283)
+..-.+--.+++|.++|+.+++++++|+++|||||||+++++++++.... ....+||++|+++||.|+++.
T Consensus 24 L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~ 103 (572)
T PRK04537 24 LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKD 103 (572)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHH
Confidence 34445556789999999999999999999999999999999998876532 135899999999999999998
Q ss_pred HHHHhccccCCeeeEEEeeeec------cCCCceEEEechhHHHHHHccC--CCCCCCceEEEcCCCcCCcchhHHHHHH
Q 000790 650 VSEEMDTELGDKVGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERSLSTDVLFGIL 721 (1283)
Q Consensus 650 Va~e~~~~lG~~VGy~ir~e~~------~s~~t~I~~~T~G~LLr~ll~d--~~L~~~s~IIIDEaHERsl~tD~ll~lL 721 (1283)
+ ..++..++..++..+..... ......|+|+|++.|+..+... ..+..+++||||||| +.++..+...+
T Consensus 104 ~-~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i- 180 (572)
T PRK04537 104 A-VKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDI- 180 (572)
T ss_pred H-HHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHH-
Confidence 7 45555566655544433221 2235689999999999987653 347889999999999 44444443333
Q ss_pred HHHHHhc---CCceEEEeccCcCH--HHHH-HHhCCCCeEeecCcccc---eeeeecCCChhhHHHHHHHHHHHHhhcCC
Q 000790 722 KKVVARR---RDFKLIVTSATLNA--QKFS-DFFGSVPIFHIPGRTFP---VNTLYSKTPCEDYVEAAVKQAMTIHITSP 792 (1283)
Q Consensus 722 k~il~~r---~dlklIlmSATld~--e~fa-~~f~~~pvi~i~gr~~p---V~i~y~~~~~~dyv~~~v~~~l~i~~~~~ 792 (1283)
..++... .+.++|+||||++. ..+. .++.....+.+...... +...+...... ..+..++.+.....
T Consensus 181 ~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~----~k~~~L~~ll~~~~ 256 (572)
T PRK04537 181 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADE----EKQTLLLGLLSRSE 256 (572)
T ss_pred HHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHH----HHHHHHHHHHhccc
Confidence 2333322 26799999999953 3333 34433222333222211 12222111111 12222333333345
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCC
Q 000790 793 PGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTV 872 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdI 872 (1283)
..++||||+++..++.++..|... ++.+..|||+|+..+|..+++.|++|..+|||||+++++||||
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~-------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH-------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc-------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 678999999999999999888642 6789999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhh
Q 000790 873 DGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 873 p~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
|+|++||+ || .|.+..+|+||+|||||.| .|.|+.|+++.+
T Consensus 324 p~V~~VIn--------yd----------~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 324 DGVKYVYN--------YD----------LPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred cCCCEEEE--------cC----------CCCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 99999999 77 6999999999999999999 599999998754
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-36 Score=372.29 Aligned_cols=322 Identities=18% Similarity=0.181 Sum_probs=236.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc---------CCCEEEEecchHHHHHHH
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSV 646 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~LA~qv 646 (1283)
...+....+--.+++|.++++.+..++++|+++|||||||+++.++++..... .+..++|++|+|+||.|+
T Consensus 133 ~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 133 LLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 34444455667789999999999999999999999999999999988875421 345899999999999998
Q ss_pred HHHHHHHhccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHH
Q 000790 647 AKRVSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFG 719 (1283)
Q Consensus 647 akrVa~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~ 719 (1283)
.+.+. .++..++..+...+.+.. ....+..|+++|||.|+..+... ..+.++.+||||||| +.++..|...
T Consensus 213 ~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~ 290 (518)
T PLN00206 213 EDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQ 290 (518)
T ss_pred HHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHH
Confidence 88774 444444433322222221 11245789999999999887643 458999999999999 5555555433
Q ss_pred HHHHHHHhcCCceEEEeccCc--CHHHHHHHhCCCCeEeecCccc-c---eeeeecCCChhhHHHHHHHHHHHHhhcCCC
Q 000790 720 ILKKVVARRRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTF-P---VNTLYSKTPCEDYVEAAVKQAMTIHITSPP 793 (1283)
Q Consensus 720 lLk~il~~r~dlklIlmSATl--d~e~fa~~f~~~pvi~i~gr~~-p---V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~ 793 (1283)
+ ..++...++.++|++|||+ +.+.++.++...+++...+... + +...+......+.. ..+..++... ....
T Consensus 291 i-~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~-~~l~~~l~~~-~~~~ 367 (518)
T PLN00206 291 V-MQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKK-QKLFDILKSK-QHFK 367 (518)
T ss_pred H-HHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHH-HHHHHHHHhh-cccC
Confidence 3 3444445678999999999 4567888777666543322211 1 12111111111111 1122222111 1224
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC
Q 000790 794 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD 873 (1283)
Q Consensus 794 G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp 873 (1283)
+++||||+++..++.++..|... .++.+..+||+++..+|..+++.|+.|..+|||||+++++|||||
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~------------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVV------------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLL 435 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhc------------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcc
Confidence 68999999999999888877532 367789999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 874 GIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 874 ~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
+|++||+ || .|.+..+|+||+|||||.| .|.||.|++.++.
T Consensus 436 ~v~~VI~--------~d----------~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 436 RVRQVII--------FD----------MPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred cCCEEEE--------eC----------CCCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 9999999 66 6999999999999999999 5999999997654
No 27
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-36 Score=368.84 Aligned_cols=319 Identities=21% Similarity=0.316 Sum_probs=250.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc--cCCC-E-EEEecchHHHHHHHHHHHH
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY--TTNG-I-VGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~--~~~~-~-Il~tqPrR~LA~qvakrVa 651 (1283)
...+....+.-.+++|..+|+.+..++++++.++||||||.+|.+++++... .... . ++|+.|||+||.|+++.+.
T Consensus 41 l~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~ 120 (513)
T COG0513 41 LQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELR 120 (513)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHH
Confidence 3344446677788999999999999999999999999999999999999855 2222 2 8999999999999999884
Q ss_pred HHhcccc-CCeeeEEEeeeec------cCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHH
Q 000790 652 EEMDTEL-GDKVGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKK 723 (1283)
Q Consensus 652 ~e~~~~l-G~~VGy~ir~e~~------~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~ 723 (1283)
.++... +..+...+.+.+. ...+.+|+|+|||.|+.++... ..+.++.++|||||+ |+++..|.-.+.+.
T Consensus 121 -~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I 198 (513)
T COG0513 121 -KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKI 198 (513)
T ss_pred -HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHH
Confidence 444443 3334333333321 1235899999999999988765 569999999999999 89999888888777
Q ss_pred HHHhcCCceEEEeccCcC--HHHHHHHhCCCCe-EeecCc-----ccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCC
Q 000790 724 VVARRRDFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGR-----TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGD 795 (1283)
Q Consensus 724 il~~r~dlklIlmSATld--~e~fa~~f~~~pv-i~i~gr-----~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ 795 (1283)
+....++.+++++|||++ ...++.-+...|+ +.+... .-.+..+|......+ ..+..+..+......+.
T Consensus 199 ~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~ 275 (513)
T COG0513 199 LKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGR 275 (513)
T ss_pred HHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCe
Confidence 777777899999999995 4455555555554 333311 123444554443322 23333333433444567
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCe
Q 000790 796 ILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI 875 (1283)
Q Consensus 796 ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V 875 (1283)
+||||+++..++.++..|... ++.+..|||+|++.+|.++++.|++|..+|||||++|++|||||+|
T Consensus 276 ~IVF~~tk~~~~~l~~~l~~~-------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 276 VIVFVRTKRLVEELAESLRKR-------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 999999999999998888653 6899999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChh
Q 000790 876 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTES 930 (1283)
Q Consensus 876 ~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~ 930 (1283)
.+||| || .|.+...|+||+||+||.|. |.++.|+++.
T Consensus 343 ~~Vin--------yD----------~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 343 SHVIN--------YD----------LPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ceeEE--------cc----------CCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 99999 88 79999999999999999995 9999999864
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.9e-36 Score=374.38 Aligned_cols=320 Identities=20% Similarity=0.233 Sum_probs=239.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 577 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
+.+....+...+++|.++|+.+..++++|++||||||||+++.+++++.... ....+||++|+|+||.|++..+....
T Consensus 19 ~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~ 98 (629)
T PRK11634 19 EALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFS 98 (629)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHH
Confidence 3445566778899999999999999999999999999999999998876533 24589999999999999999986654
Q ss_pred ccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh
Q 000790 655 DTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 727 (1283)
Q Consensus 655 ~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~ 727 (1283)
....+..+........ .....+.|+|+|++.|+..+.... .|+++.+|||||||+ .+...+...+...+...
T Consensus 99 ~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~l 177 (629)
T PRK11634 99 KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQI 177 (629)
T ss_pred hhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhC
Confidence 4333444433222221 123467899999999999887553 489999999999995 45555554444444445
Q ss_pred cCCceEEEeccCcC--HHHHHHHhCCCC-eEeecCccc---ceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcC
Q 000790 728 RRDFKLIVTSATLN--AQKFSDFFGSVP-IFHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMT 801 (1283)
Q Consensus 728 r~dlklIlmSATld--~e~fa~~f~~~p-vi~i~gr~~---pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~ 801 (1283)
....++++||||++ ...+...|...| .+.+..... .+...|......+... ++. .+........+||||+
T Consensus 178 p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~-~L~---~~L~~~~~~~~IVF~~ 253 (629)
T PRK11634 178 PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNE-ALV---RFLEAEDFDAAIIFVR 253 (629)
T ss_pred CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHH-HHH---HHHHhcCCCCEEEEec
Confidence 56789999999994 444555444333 344433221 1222332222212111 222 2222334578999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEc
Q 000790 802 GQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDT 881 (1283)
Q Consensus 802 g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDs 881 (1283)
++..++.++..|.. .++.+..+||.|++.+|..+++.|+.|..+|||||+++++|||||+|.+||+
T Consensus 254 tk~~a~~l~~~L~~-------------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~- 319 (629)
T PRK11634 254 TKNATLEVAEALER-------------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN- 319 (629)
T ss_pred cHHHHHHHHHHHHh-------------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE-
Confidence 99999999998865 2678999999999999999999999999999999999999999999999999
Q ss_pred CCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 882 GYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 882 Gl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
|| .|.+..+|+||+|||||.|. |.|+.|++..+.
T Consensus 320 -------~d----------~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 320 -------YD----------IPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred -------eC----------CCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 77 69999999999999999995 999999987543
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.1e-36 Score=362.51 Aligned_cols=320 Identities=20% Similarity=0.264 Sum_probs=232.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC---------CCEEEEecchHHHHHH
Q 000790 575 SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT---------NGIVGCTQPRRVAAMS 645 (1283)
Q Consensus 575 ~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~---------~~~Il~tqPrR~LA~q 645 (1283)
....+.....--.+++|.++++.+.+|+++|+++|||||||+++.+++++..... ...++|++|+++||.|
T Consensus 98 l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q 177 (475)
T PRK01297 98 LMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQ 177 (475)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHH
Confidence 3444555566668899999999999999999999999999999999988765432 3579999999999999
Q ss_pred HHHHHHHHhccccCCeeeEEEeeee-------ccCCCceEEEechhHHHHHHcc-CCCCCCCceEEEcCCCcCCcchhHH
Q 000790 646 VAKRVSEEMDTELGDKVGYAIRFED-------VTGPSTLIKYMTDGVLLRETLK-DSDLDKYRVIVMDEAHERSLSTDVL 717 (1283)
Q Consensus 646 vakrVa~e~~~~lG~~VGy~ir~e~-------~~s~~t~I~~~T~G~LLr~ll~-d~~L~~~s~IIIDEaHERsl~tD~l 717 (1283)
+++.+.. +...+|..+...+...+ .......|+|+|+++|+..+.. ...|+++++|||||||. .++..++
T Consensus 178 ~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~~ 255 (475)
T PRK01297 178 IAKDAAA-LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR-MLDMGFI 255 (475)
T ss_pred HHHHHHH-hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH-HHhcccH
Confidence 9998854 33334444432222211 1234578999999999887654 35689999999999994 4444443
Q ss_pred HHHHHHHHHh---cCCceEEEeccCc--CHHHHHHHhCCCCe-EeecCccc---ceeeeecCCChhhHHHHHHHHHHHHh
Q 000790 718 FGILKKVVAR---RRDFKLIVTSATL--NAQKFSDFFGSVPI-FHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIH 788 (1283)
Q Consensus 718 l~lLk~il~~---r~dlklIlmSATl--d~e~fa~~f~~~pv-i~i~gr~~---pV~i~y~~~~~~dyv~~~v~~~l~i~ 788 (1283)
. .++.++.. ..+.++|++|||+ +...+...+...|+ +.+..... .+..++......+. ...+..+.
T Consensus 256 ~-~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~ll 330 (475)
T PRK01297 256 P-QVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK----YKLLYNLV 330 (475)
T ss_pred H-HHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH----HHHHHHHH
Confidence 2 23334333 2357999999998 34555555544444 33322111 11222211111111 11122222
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccc
Q 000790 789 ITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAET 868 (1283)
Q Consensus 789 ~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEt 868 (1283)
......++||||+++..++.++..|.. .++.+..+||+++.++|..+++.|++|.++|||||+++++
T Consensus 331 ~~~~~~~~IVF~~s~~~~~~l~~~L~~-------------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~ 397 (475)
T PRK01297 331 TQNPWERVMVFANRKDEVRRIEERLVK-------------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGR 397 (475)
T ss_pred HhcCCCeEEEEeCCHHHHHHHHHHHHH-------------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Confidence 233456899999999999999887754 2577889999999999999999999999999999999999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 869 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 869 GIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|||||+|++||+ || .|.|.++|+||+|||||.| .|.|+.|+++++.
T Consensus 398 GIDi~~v~~VI~--------~~----------~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 398 GIHIDGISHVIN--------FT----------LPEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred CCcccCCCEEEE--------eC----------CCCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 999999999999 55 6999999999999999999 5999999997643
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.7e-35 Score=349.29 Aligned_cols=314 Identities=16% Similarity=0.198 Sum_probs=228.6
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
..--.+++|.++++.+.+++++|++||||||||+++.++++..... .+..+++++|+++||.|+.+.+.. ++..++.
T Consensus 47 ~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~~~~ 125 (401)
T PTZ00424 47 GFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA-LGDYLKV 125 (401)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH-HhhhcCc
Confidence 3444679999999999999999999999999999998888876432 345899999999999999887744 3333333
Q ss_pred eeeEEEeeee------ccCCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceE
Q 000790 661 KVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 661 ~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlkl 733 (1283)
.++..+.... .......|+++|++.|+..+.... .+.++++|||||||. .....+...+...+....+++++
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~~~~~~i~~~~~~~~~~ 204 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFKGQIYDVFKKLPPDVQV 204 (401)
T ss_pred eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchHHHHHHHHhhCCCCcEE
Confidence 3322221111 112346899999999998876543 589999999999994 33333332333333344678999
Q ss_pred EEeccCcC--HHHHHHHhCCCCe-EeecCccc---ceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 000790 734 IVTSATLN--AQKFSDFFGSVPI-FHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 807 (1283)
Q Consensus 734 IlmSATld--~e~fa~~f~~~pv-i~i~gr~~---pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe 807 (1283)
|++|||+. ...+...+...|. +.+..... .+..+|.......+....+ ..+.......++||||+++..++
T Consensus 205 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 205 ALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTL---CDLYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred EEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHH---HHHHHhcCCCeEEEEecCcHHHH
Confidence 99999994 3344444443343 22222211 1223333322223322222 22222334578999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccce
Q 000790 808 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 887 (1283)
Q Consensus 808 ~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~ 887 (1283)
.++..|.+ .++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|+|++||+
T Consensus 282 ~l~~~l~~-------------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~------- 341 (401)
T PTZ00424 282 YLTKKMHE-------------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN------- 341 (401)
T ss_pred HHHHHHHH-------------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE-------
Confidence 99888764 2677999999999999999999999999999999999999999999999998
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 888 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 888 ~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|| .|.|..+|+||+|||||.| .|.||.|+++++.
T Consensus 342 -~~----------~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 342 -YD----------LPASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred -EC----------CCCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 55 6899999999999999998 5999999998765
No 31
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.5e-34 Score=356.24 Aligned_cols=439 Identities=23% Similarity=0.268 Sum_probs=292.3
Q ss_pred CHHHHHHHHHH-HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 587 IFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 587 i~~~Q~eil~~-I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
+++.|++.+.. +.+++|+||++|||||||.++.+.|+......++++++++|+++||.++++.+. .-..+|..|+..
T Consensus 32 l~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~--~~~~~GirV~~~ 109 (766)
T COG1204 32 LFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS--RLEELGIRVGIS 109 (766)
T ss_pred hhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh--hHHhcCCEEEEe
Confidence 44555555544 456799999999999999999999998877767899999999999999999997 223456666644
Q ss_pred Eeeeecc---CCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCCc-----CCcchhHHHHHHHHHHHhcCCceEEEe
Q 000790 666 IRFEDVT---GPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHE-----RSLSTDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 666 ir~e~~~---s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHE-----Rsl~tD~ll~lLk~il~~r~dlklIlm 736 (1283)
.+..+.. -..+.|+|+|++.+-..+.+.+ .+..+++|||||+|. |+. ++..++.+.....+.++||++
T Consensus 110 TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~---~lE~iv~r~~~~~~~~rivgL 186 (766)
T COG1204 110 TGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP---VLESIVARMRRLNELIRIVGL 186 (766)
T ss_pred cCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc---eehhHHHHHHhhCcceEEEEE
Confidence 4333322 3678999999998866555443 478999999999994 444 344455555556677999999
Q ss_pred ccCc-CHHHHHHHhCCCCeEeecCcccc--------eeeeecCCChh--h--HHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 000790 737 SATL-NAQKFSDFFGSVPIFHIPGRTFP--------VNTLYSKTPCE--D--YVEAAVKQAMTIHITSPPGDILIFMTGQ 803 (1283)
Q Consensus 737 SATl-d~e~fa~~f~~~pvi~i~gr~~p--------V~i~y~~~~~~--d--yv~~~v~~~l~i~~~~~~G~ILVFl~g~ 803 (1283)
|||+ |+..++.|++..++ ....+..| ....+...... . .-...+..+ +.....+|++||||+++
T Consensus 187 SATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v--~~~~~~~~qvLvFv~sR 263 (766)
T COG1204 187 SATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELV--LESLAEGGQVLVFVHSR 263 (766)
T ss_pred eeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHH--HHHHhcCCeEEEEEecC
Confidence 9999 99999999987655 21111111 11111111110 1 111122222 22234588999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc--------cC----------------CCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeE
Q 000790 804 DEIEAACFALKERMEQLISST--------TR----------------EVPELLILPIYSQLPADLQAKIFEKAKEGTRKC 859 (1283)
Q Consensus 804 ~eIe~l~~~L~e~l~~l~~~~--------~~----------------~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKV 859 (1283)
..+..++..|...+....... .. ..-...+..||++|+.++|..+.+.|+.|.++|
T Consensus 264 ~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikV 343 (766)
T COG1204 264 KEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKV 343 (766)
T ss_pred chHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceE
Confidence 999999999986443221100 00 011235788999999999999999999999999
Q ss_pred EEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC--C-CEEEEec-C--hhhhh
Q 000790 860 IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG--P-GTCYRLY-T--ESAYL 933 (1283)
Q Consensus 860 LVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g--~-G~cyrLy-t--~~~~~ 933 (1283)
||||++++.|||+|.-.+|| . ....||+..|+ .+++.-++.|++|||||.| + |..+.+. + +..+.
T Consensus 344 lv~TpTLA~GVNLPA~~VII-k---~~~~y~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~ 414 (766)
T COG1204 344 LVSTPTLAAGVNLPARTVII-K---DTRRYDPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYL 414 (766)
T ss_pred EEechHHhhhcCCcceEEEE-e---eeEEEcCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHH
Confidence 99999999999999777776 2 35678875554 6899999999999999999 2 6666555 2 23333
Q ss_pred hhcCCCCcchhhccchh------HHHHHHhhcc-------cCcccCCCCCCC------CChhhHHHHHHHHHHhc-cccc
Q 000790 934 NEMLPSPVPEIQRTNLG------NVVLLLKSLK-------IDNLLDFDFMDP------PPQENILNSMYQLWVLG-ALNN 993 (1283)
Q Consensus 934 ~~m~~~~~PEI~r~~L~------~vvL~Lk~lg-------i~~l~~f~fldp------P~~~~i~~al~~L~~lg-aLd~ 993 (1283)
........||...+.|. ..++.+.+.| ..++..--|..| -....+..+++.|...+ +++.
T Consensus 415 ~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~ 494 (766)
T COG1204 415 AELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDA 494 (766)
T ss_pred HHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeec
Confidence 44445566665222221 1111111111 000000011111 13466788899998886 6654
Q ss_pred C---CCCCHHHHHHHhCCCChHHHHHHHhhhhcCch-HHHHHHHHHhcCCCcc
Q 000790 994 V---GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCL-DEVLTIVSMLSVPSVF 1042 (1283)
Q Consensus 994 ~---g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~-~e~l~I~a~ls~~~~f 1042 (1283)
. -..|.+|+.++.+.++|..++.+......--. ...+.+..+++..+-|
T Consensus 495 ~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~ 547 (766)
T COG1204 495 DWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDL 547 (766)
T ss_pred cccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccc
Confidence 3 35799999999999999999999876543322 1334444555544333
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3e-34 Score=362.67 Aligned_cols=327 Identities=17% Similarity=0.167 Sum_probs=234.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHHHH
Q 000790 575 SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEE 653 (1283)
Q Consensus 575 ~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa~e 653 (1283)
..+.++....-..|++|.++++.+.+++++|+++|||||||+++.+++++..... +..++|+.|+|+||.|+...+...
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 3445556666678999999999999999999999999999999999999876543 458999999999999999998543
Q ss_pred hccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-----CCCCCCceEEEcCCCcC-Cc---chhHHH
Q 000790 654 MDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-----SDLDKYRVIVMDEAHER-SL---STDVLF 718 (1283)
Q Consensus 654 ~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-----~~L~~~s~IIIDEaHER-sl---~tD~ll 718 (1283)
+ ..+..++. ..++. ....+.+|+++||++|...++.. ..|+++++|||||||.- +. +...++
T Consensus 105 -~-~~~i~v~~-~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il 181 (742)
T TIGR03817 105 -T-LRGVRPAT-YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVL 181 (742)
T ss_pred -c-cCCeEEEE-EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHH
Confidence 3 22323321 11111 11235789999999997655432 23789999999999952 21 112233
Q ss_pred HHHHHHHHh-cCCceEEEeccCc-CHHHHHHHhCCCCeEeecCcccc---eeeeecCCCh------------hhHHHHHH
Q 000790 719 GILKKVVAR-RRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFP---VNTLYSKTPC------------EDYVEAAV 781 (1283)
Q Consensus 719 ~lLk~il~~-r~dlklIlmSATl-d~e~fa~~f~~~pvi~i~gr~~p---V~i~y~~~~~------------~dyv~~~v 781 (1283)
..|+.+... ..+.++|++|||+ |...+..++.+.|+..+....-| ....+...+. ........
T Consensus 182 ~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~ 261 (742)
T TIGR03817 182 RRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAA 261 (742)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHH
Confidence 334444332 3568999999999 67777777666666555432222 1111111110 00011111
Q ss_pred HHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEE
Q 000790 782 KQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIV 861 (1283)
Q Consensus 782 ~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLV 861 (1283)
..+..+ .....++||||+++..++.++..|.+.+.... ......+..+||++.+++|.++++.|++|..+|||
T Consensus 262 ~~l~~l--~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-----~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLV 334 (742)
T TIGR03817 262 DLLADL--VAEGARTLTFVRSRRGAELVAAIARRLLGEVD-----PDLAERVAAYRAGYLPEDRRELERALRDGELLGVA 334 (742)
T ss_pred HHHHHH--HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----cccccchhheecCCCHHHHHHHHHHHHcCCceEEE
Confidence 111111 12367899999999999999999877653321 11245688999999999999999999999999999
Q ss_pred ecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecCh
Q 000790 862 ATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTE 929 (1283)
Q Consensus 862 ATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~ 929 (1283)
|||++++||||++|++||+ |+ .|.+.++|+||+|||||.|. |.++.+.+.
T Consensus 335 aTd~lerGIDI~~vd~VI~--------~~----------~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 335 TTNALELGVDISGLDAVVI--------AG----------FPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ECchHhccCCcccccEEEE--------eC----------CCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999 44 69999999999999999995 999988863
No 33
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=329.06 Aligned_cols=337 Identities=20% Similarity=0.233 Sum_probs=254.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-----CC--EEEEecchHHHHHHHHH
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NG--IVGCTQPRRVAAMSVAK 648 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-----~~--~Il~tqPrR~LA~qvak 648 (1283)
++.+..-.+--+.++|...|+.+..|++|++.++||||||++|++++++..+.. .+ ..+|+.|||+||.|+.+
T Consensus 18 ~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~ 97 (567)
T KOG0345|consen 18 LEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE 97 (567)
T ss_pred HHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH
Confidence 444455555567899999999999999999999999999999999999876432 22 57889999999999987
Q ss_pred HHHHHhccccC-----CeeeEEEeeeec---cCCCceEEEechhHHHHHHccC-CC--CCCCceEEEcCCCcCCcchhHH
Q 000790 649 RVSEEMDTELG-----DKVGYAIRFEDV---TGPSTLIKYMTDGVLLRETLKD-SD--LDKYRVIVMDEAHERSLSTDVL 717 (1283)
Q Consensus 649 rVa~e~~~~lG-----~~VGy~ir~e~~---~s~~t~I~~~T~G~LLr~ll~d-~~--L~~~s~IIIDEaHERsl~tD~l 717 (1283)
.+ ..|-..+- ..||-..-.++. ...+..|+++|||.|+..+... .. +..+.++|||||+ |.+++.|.
T Consensus 98 V~-~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe 175 (567)
T KOG0345|consen 98 VA-QPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFE 175 (567)
T ss_pred HH-HHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHH
Confidence 66 44433321 122221111111 2357789999999999988763 22 4589999999999 99999988
Q ss_pred HHHHHHHHHhcCCceEEEeccCc--CHHHHHHHhCCCCe-EeecCcc---cc--eeeeecCCChhhHHHHHHHHHHHHhh
Q 000790 718 FGILKKVVARRRDFKLIVTSATL--NAQKFSDFFGSVPI-FHIPGRT---FP--VNTLYSKTPCEDYVEAAVKQAMTIHI 789 (1283)
Q Consensus 718 l~lLk~il~~r~dlklIlmSATl--d~e~fa~~f~~~pv-i~i~gr~---~p--V~i~y~~~~~~dyv~~~v~~~l~i~~ 789 (1283)
-.+-..+.......+.=++|||. .++.+.......|+ +.+.... -| +..+|...... ..+..++.+..
T Consensus 176 ~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~----eK~~~lv~~L~ 251 (567)
T KOG0345|consen 176 ASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD----EKLSQLVHLLN 251 (567)
T ss_pred HHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH----HHHHHHHHHHh
Confidence 77766666666778899999999 46677777666665 3332222 33 55555543322 22334444444
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCccccc
Q 000790 790 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 869 (1283)
Q Consensus 790 ~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtG 869 (1283)
....+++|||++|...++.....|...+ ....++++||.|.+..|.++++.|.....-|++||++|++|
T Consensus 252 ~~~~kK~iVFF~TCasVeYf~~~~~~~l-----------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 252 NNKDKKCIVFFPTCASVEYFGKLFSRLL-----------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred ccccccEEEEecCcchHHHHHHHHHHHh-----------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 5567899999999999999888776542 57889999999999999999999999888999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEec--ChhhhhhhcCCCCcchhhc
Q 000790 870 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLY--TESAYLNEMLPSPVPEIQR 946 (1283)
Q Consensus 870 IdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLy--t~~~~~~~m~~~~~PEI~r 946 (1283)
||||+|++||+ || .|....+|+||+||+||.|. |.++.|. .+++|.+.|.....|++-+
T Consensus 321 lDip~iD~VvQ--------~D----------pP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 321 LDIPGIDLVVQ--------FD----------PPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred CCCCCceEEEe--------cC----------CCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 99999999998 99 68999999999999999984 7766665 4567766666555666544
Q ss_pred c
Q 000790 947 T 947 (1283)
Q Consensus 947 ~ 947 (1283)
.
T Consensus 383 ~ 383 (567)
T KOG0345|consen 383 I 383 (567)
T ss_pred h
Confidence 3
No 34
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=336.09 Aligned_cols=324 Identities=17% Similarity=0.231 Sum_probs=259.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC------CCEEEEecchHHHHHHH
Q 000790 573 AKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT------NGIVGCTQPRRVAAMSV 646 (1283)
Q Consensus 573 ~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~------~~~Il~tqPrR~LA~qv 646 (1283)
.+.+.-+..-.+.-+..+|.+.|+..++|++||..+.||||||++|+.++++.++.. +--++|+.|||+||.|+
T Consensus 78 ~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~Qt 157 (758)
T KOG0343|consen 78 QKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQT 157 (758)
T ss_pred hHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHH
Confidence 345566667778888999999999999999999999999999999999999987653 34688999999999999
Q ss_pred HHHHHHHhccccCCeeeEEEeeeec-----cCCCceEEEechhHHHHHHccCCCC--CCCceEEEcCCCcCCcchhHHHH
Q 000790 647 AKRVSEEMDTELGDKVGYAIRFEDV-----TGPSTLIKYMTDGVLLRETLKDSDL--DKYRVIVMDEAHERSLSTDVLFG 719 (1283)
Q Consensus 647 akrVa~e~~~~lG~~VGy~ir~e~~-----~s~~t~I~~~T~G~LLr~ll~d~~L--~~~s~IIIDEaHERsl~tD~ll~ 719 (1283)
...+. ..|...+...|..|.+.+. .-...+|++||||.||+++..++.| .++.++|||||+ |.+++.|--.
T Consensus 158 FevL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~t 235 (758)
T KOG0343|consen 158 FEVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKT 235 (758)
T ss_pred HHHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHH
Confidence 98874 3444444445555554442 2356789999999999999888775 678899999999 9999998766
Q ss_pred HHHHHHHhcCCceEEEeccCc--CHHHHHHHhCCCCeEe-ecC---cccc--eeeeecCCChhhHHHHHHHHHHHHhhcC
Q 000790 720 ILKKVVARRRDFKLIVTSATL--NAQKFSDFFGSVPIFH-IPG---RTFP--VNTLYSKTPCEDYVEAAVKQAMTIHITS 791 (1283)
Q Consensus 720 lLk~il~~r~dlklIlmSATl--d~e~fa~~f~~~pvi~-i~g---r~~p--V~i~y~~~~~~dyv~~~v~~~l~i~~~~ 791 (1283)
+-..+-...+..|.+++|||. ++..+++.-...|.+. +.. ..+| +..+|...+..+- +..+.....+.
T Consensus 236 L~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~K----i~~L~sFI~sh 311 (758)
T KOG0343|consen 236 LNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDK----IDMLWSFIKSH 311 (758)
T ss_pred HHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhH----HHHHHHHHHhc
Confidence 666666667788999999999 6888998866666542 221 1122 3445554444433 33333333445
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCC
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 871 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGId 871 (1283)
...++|||+.+.+++..+|+.+... .|++.++.|||.|.+..|..+|..|-...--||+||+++++|||
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rl-----------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRL-----------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLD 380 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhc-----------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCC
Confidence 5778999999999999998877643 37899999999999999999999999888999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhh
Q 000790 872 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 872 Ip~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 931 (1283)
+|.|++||. || ||....+|+||+||+.|.+. |.|+.+.++..
T Consensus 381 FpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 381 FPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred CcccceEEE--------ec----------CchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 999999998 88 99999999999999999995 99999998765
No 35
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6e-34 Score=326.53 Aligned_cols=320 Identities=19% Similarity=0.214 Sum_probs=252.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC------CCEEEEecchHHHHHHHHHHH
Q 000790 577 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT------NGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~------~~~Il~tqPrR~LA~qvakrV 650 (1283)
..+..-...-+.++|+..|+.++.++++++.|.||||||++++++.++..+.. +-.++|+.|||+||+|++..+
T Consensus 95 kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ea 174 (543)
T KOG0342|consen 95 KAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEA 174 (543)
T ss_pred HHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHH
Confidence 34444566678899999999999999999999999999999999988875532 236888999999999999988
Q ss_pred HHHhccccCCeeeEEEeeeecc------CCCceEEEechhHHHHHHccCCC--CCCCceEEEcCCCcCCcchhHHHHHHH
Q 000790 651 SEEMDTELGDKVGYAIRFEDVT------GPSTLIKYMTDGVLLRETLKDSD--LDKYRVIVMDEAHERSLSTDVLFGILK 722 (1283)
Q Consensus 651 a~e~~~~lG~~VGy~ir~e~~~------s~~t~I~~~T~G~LLr~ll~d~~--L~~~s~IIIDEaHERsl~tD~ll~lLk 722 (1283)
.+.+...-+..||+.+.+.+.. ...+.|+|+|||.|+.++.+.+. ..+..++|||||+ |.++..|--.+.+
T Consensus 175 k~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~ 253 (543)
T KOG0342|consen 175 KELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQ 253 (543)
T ss_pred HHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHH
Confidence 7777766678888888877632 34789999999999999987654 5677899999999 9999999888887
Q ss_pred HHHHhcCCceEEEeccCcC--HHHHHHHhCC-CCeE-eec-Cccc----ceeeeecCCChhhHHHHHHHHHHHHhhcCCC
Q 000790 723 KVVARRRDFKLIVTSATLN--AQKFSDFFGS-VPIF-HIP-GRTF----PVNTLYSKTPCEDYVEAAVKQAMTIHITSPP 793 (1283)
Q Consensus 723 ~il~~r~dlklIlmSATld--~e~fa~~f~~-~pvi-~i~-gr~~----pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~ 793 (1283)
.+-......|.+++|||+. ++.++..... .|++ .+. +..- -++.-|.-.+....+. .+-..+.-++. .
T Consensus 254 Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~-ll~~~LKk~~~--~ 330 (543)
T KOG0342|consen 254 IIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS-LLYTFLKKNIK--R 330 (543)
T ss_pred HHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH-HHHHHHHHhcC--C
Confidence 7777777899999999994 5566654433 2332 221 1111 1233333333322221 22222333332 2
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC
Q 000790 794 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD 873 (1283)
Q Consensus 794 G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp 873 (1283)
.+|+|||+|...+..+++.|.. ..+.|+-+||++++..|..+|..|.+...-||||||++++|+|+|
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~-------------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNY-------------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhh-------------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 7899999999999999988863 378899999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhh
Q 000790 874 GIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 874 ~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 931 (1283)
+|+.||+ || .|-...+|+||+||+||.|. |..+.|..++.
T Consensus 398 ~V~~VvQ--------~~----------~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 398 DVDWVVQ--------YD----------PPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred CceEEEE--------eC----------CCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 9999999 66 69999999999999999995 99999988764
No 36
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=325.87 Aligned_cols=448 Identities=20% Similarity=0.186 Sum_probs=320.1
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHH-HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHH
Q 000790 572 FAKSKTLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 572 ~~~~~~l~~~R~~LPi~~~Q~eil~~-I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrV 650 (1283)
..+.+.+++.+..--+.|+|.-++++ +.++.+++|+.+|+||||++..+.=+...+..+++.++++|.-+||+|.+..+
T Consensus 202 pe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF 281 (830)
T COG1202 202 PEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDF 281 (830)
T ss_pred cHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHH
Confidence 45678889988777777788777765 78999999999999999999877766666777889999999999999999999
Q ss_pred HHHhccccCCeeeEEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCC-----cCCcchh
Q 000790 651 SEEMDTELGDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH-----ERSLSTD 715 (1283)
Q Consensus 651 a~e~~~~lG~~VGy~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaH-----ERsl~tD 715 (1283)
.+.+ .++|..+...+.... .++++..|++.|.+-+--.+.....|.+++.|||||+| ||+...|
T Consensus 282 ~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 282 KERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred HHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchh
Confidence 7766 577776655443221 34568899999988665555555789999999999999 4777777
Q ss_pred HHHHHHHHHHHhcCCceEEEeccCc-CHHHHHHHhCCCCeEeecCcccceeeeecCCC----hhhHHHHHHHHHHH-Hhh
Q 000790 716 VLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP----CEDYVEAAVKQAMT-IHI 789 (1283)
Q Consensus 716 ~ll~lLk~il~~r~dlklIlmSATl-d~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~----~~dyv~~~v~~~l~-i~~ 789 (1283)
-+.+.|+. ..|+.|+|.+|||+ |++.++..|+ +..+....|..|++-|..-.. ..+.+...++.-.. ...
T Consensus 361 GLI~RLr~---l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ss 436 (830)
T COG1202 361 GLIGRLRY---LFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESS 436 (830)
T ss_pred hHHHHHHH---hCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhc
Confidence 65555555 57899999999999 9999999998 455667788888776543222 11222222222222 222
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCccccc
Q 000790 790 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 869 (1283)
Q Consensus 790 ~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtG 869 (1283)
..-.|++|||.+++..|+.++..|..+ ++...|+|+||+..+|..|...|..+.+.+||+|..++.|
T Consensus 437 kg~rGQtIVFT~SRrr~h~lA~~L~~k-------------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 437 KGYRGQTIVFTYSRRRCHELADALTGK-------------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred cCcCCceEEEecchhhHHHHHHHhhcC-------------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 334799999999999999999988653 7889999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEecChh-hhhhhcCC-------
Q 000790 870 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES-AYLNEMLP------- 938 (1283)
Q Consensus 870 IdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~~-~~~~~m~~------- 938 (1283)
||+|.-.+|+ +. -.+...|+|..+|.|+.|||||.+ .|++|.|..+. .|...|..
T Consensus 504 VDFPASQVIF----------Es----LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~ 569 (830)
T COG1202 504 VDFPASQVIF----------ES----LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAF 569 (830)
T ss_pred CCCchHHHHH----------HH----HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHH
Confidence 9999655444 32 123447999999999999999998 59999997643 33222221
Q ss_pred ---CCcchhhcc------chhHHHHHH---hhcc-cCcccCCCCCCCCChhhHHHHHHHHHHhcccccCC---CCCHHHH
Q 000790 939 ---SPVPEIQRT------NLGNVVLLL---KSLK-IDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVG---ALTDLGW 1002 (1283)
Q Consensus 939 ---~~~PEI~r~------~L~~vvL~L---k~lg-i~~l~~f~fldpP~~~~i~~al~~L~~lgaLd~~g---~LT~lG~ 1002 (1283)
...||-... .+++++-.. ++.+ +..+....+- ..-....++..|.++|+|+.+| ++|+.|+
T Consensus 570 kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g---~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGr 646 (830)
T COG1202 570 KLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLG---AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGR 646 (830)
T ss_pred HHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhcc---ccCCHHHHHHHHHhcCCeeccCCEeeeccccc
Confidence 112222111 112222111 1111 1112111110 0122478999999999999776 6899999
Q ss_pred HHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhc-CCCcccCChhhHHHHHHHH
Q 000790 1003 KMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLS-VPSVFFRPKDRAEESDAAR 1056 (1283)
Q Consensus 1003 ~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls-~~~~f~~p~~~~~~~~~~r 1056 (1283)
+++..-+.|.-|-.|..++ ....++ +-|++.|. ..+.++.+.-.+.-..+.+
T Consensus 647 ava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~l~pfE~ayls~~l~r~i~~~~~ 699 (830)
T COG1202 647 AVAMSFLGPSEAEFIREGV-LASMDP-LRIAAELEPFENAYLSGFLKRAIESALR 699 (830)
T ss_pred eeEEeecCchHHHHHHHhh-hccCCh-HhHhhccccccccccChHHHHHHHHHhc
Confidence 9999999999999998886 333344 44555554 4555555544444334444
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-33 Score=338.50 Aligned_cols=302 Identities=18% Similarity=0.196 Sum_probs=216.6
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEE
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI 666 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~i 666 (1283)
.+++|.++++++..++++++++|||||||+++.++++.. ++.++|+.|+++|+.++...+.. ++ ..+.+..
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----~~~~lVi~P~~~L~~dq~~~l~~-~g----i~~~~l~ 82 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----DGITLVISPLISLMEDQVLQLKA-SG----IPATFLN 82 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----CCcEEEEecHHHHHHHHHHHHHH-cC----CcEEEEe
Confidence 458999999999999999999999999999988877653 46788999999999999888843 33 2222211
Q ss_pred eee----------eccCCCceEEEechhHHHHHH--ccCC-CCCCCceEEEcCCCcCCcc-hhHHH--HHHHHHHHhcCC
Q 000790 667 RFE----------DVTGPSTLIKYMTDGVLLRET--LKDS-DLDKYRVIVMDEAHERSLS-TDVLF--GILKKVVARRRD 730 (1283)
Q Consensus 667 r~e----------~~~s~~t~I~~~T~G~LLr~l--l~d~-~L~~~s~IIIDEaHERsl~-tD~ll--~lLk~il~~r~d 730 (1283)
... ........|+|+||+.+.... .... .+.++++|||||||..+-. .+|.. ..+..+....++
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPN 162 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCC
Confidence 111 112345789999999874321 1111 4678999999999964322 22322 234445556789
Q ss_pred ceEEEeccCcCHH---HHHHHhC-CCCeEeecCcccceeeeecCC-ChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 000790 731 FKLIVTSATLNAQ---KFSDFFG-SVPIFHIPGRTFPVNTLYSKT-PCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE 805 (1283)
Q Consensus 731 lklIlmSATld~e---~fa~~f~-~~pvi~i~gr~~pV~i~y~~~-~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~e 805 (1283)
.++|++|||++.. .+..+++ ..|.+.......| .+.|... ...+.+...+..+.. ..+...+||||+++++
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~~l~~~l~~---~~~~~~~IIF~~s~~~ 238 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILEDLLRFIRK---EFKGKSGIIYCPSRKK 238 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHHHHHHHHHH---hcCCCceEEEECcHHH
Confidence 9999999999654 4445543 2333333222222 1122111 111222221111111 2234456999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCcc
Q 000790 806 IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGK 885 (1283)
Q Consensus 806 Ie~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K 885 (1283)
++.++..|... ++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+
T Consensus 239 ~e~la~~L~~~-------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----- 300 (470)
T TIGR00614 239 SEQVTASLQNL-------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----- 300 (470)
T ss_pred HHHHHHHHHhc-------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE-----
Confidence 99999988652 678999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 886 MKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 886 ~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|+ .|.|.++|+||+|||||.| +|.|+.+|+..+.
T Consensus 301 ---~~----------~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 301 ---YS----------LPKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred ---eC----------CCCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 55 6899999999999999999 6999999998765
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.6e-33 Score=351.45 Aligned_cols=304 Identities=17% Similarity=0.125 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
-..++|.++|++++.++++|+++|||+|||+++.++++.. .+.+||+.|+++|+.++...+.. .|..+.+.
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----~GiTLVISPLiSLmqDQV~~L~~-----~GI~Aa~L 530 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMNLLQ-----ANIPAASL 530 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHh-----CCCeEEEE
Confidence 4678999999999999999999999999999998888764 46899999999999855544422 23333322
Q ss_pred Eeeee----------cc--CCCceEEEechhHHHH------HHccCCCCCCCceEEEcCCCcCCcc-hhHHHHH--HHHH
Q 000790 666 IRFED----------VT--GPSTLIKYMTDGVLLR------ETLKDSDLDKYRVIVMDEAHERSLS-TDVLFGI--LKKV 724 (1283)
Q Consensus 666 ir~e~----------~~--s~~t~I~~~T~G~LLr------~ll~d~~L~~~s~IIIDEaHERsl~-tD~ll~l--Lk~i 724 (1283)
..... .. .....|+|+||+.|.. .+..-.....+++|||||||+-+-. .||...+ |..+
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L 610 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL 610 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHH
Confidence 21111 11 1457899999998752 2211122455899999999964332 2443332 3344
Q ss_pred HHhcCCceEEEeccCcCH---HHHHHHhCCC-CeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEc
Q 000790 725 VARRRDFKLIVTSATLNA---QKFSDFFGSV-PIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFM 800 (1283)
Q Consensus 725 l~~r~dlklIlmSATld~---e~fa~~f~~~-pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl 800 (1283)
....++.+++++|||++. +.+...++-. +++...+. ....++|...+........+...+ ......+..||||
T Consensus 611 r~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf-~RpNL~y~Vv~k~kk~le~L~~~I--~~~~~~esgIIYC 687 (1195)
T PLN03137 611 KQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF-NRPNLWYSVVPKTKKCLEDIDKFI--KENHFDECGIIYC 687 (1195)
T ss_pred HHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-CccceEEEEeccchhHHHHHHHHH--HhcccCCCceeEe
Confidence 556788999999999954 3455555533 22222222 122333432222111111111111 1122356789999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEE
Q 000790 801 TGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVID 880 (1283)
Q Consensus 801 ~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VID 880 (1283)
.++.+++.++..|.. .++.+.+|||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+
T Consensus 688 ~SRke~E~LAe~L~~-------------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH 754 (1195)
T PLN03137 688 LSRMDCEKVAERLQE-------------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 754 (1195)
T ss_pred CchhHHHHHHHHHHH-------------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE
Confidence 999999999998865 2788999999999999999999999999999999999999999999999999
Q ss_pred cCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 881 TGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 881 sGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|| .|.|.++|+||+|||||.| +|.|+.||+..++
T Consensus 755 --------yd----------lPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 755 --------HS----------LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred --------cC----------CCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 66 6999999999999999999 6999999998766
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1e-32 Score=343.43 Aligned_cols=302 Identities=17% Similarity=0.211 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
..+++|.++++++..++++++++|||||||+++.++++.. .+.++|++|+++|+.++...+.. ++ ..+.+.
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----~g~tlVisPl~sL~~dqv~~l~~-~g----i~~~~~ 95 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----DGLTLVVSPLISLMKDQVDQLLA-NG----VAAACL 95 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----CCCEEEEecHHHHHHHHHHHHHH-cC----CcEEEE
Confidence 3568999999999999999999999999999987777643 45788999999999999888753 33 222221
Q ss_pred Eee----------eeccCCCceEEEechhHHHHH-HccCCCCCCCceEEEcCCCcCCcch-hH--HHHHHHHHHHhcCCc
Q 000790 666 IRF----------EDVTGPSTLIKYMTDGVLLRE-TLKDSDLDKYRVIVMDEAHERSLST-DV--LFGILKKVVARRRDF 731 (1283)
Q Consensus 666 ir~----------e~~~s~~t~I~~~T~G~LLr~-ll~d~~L~~~s~IIIDEaHERsl~t-D~--ll~lLk~il~~r~dl 731 (1283)
... ..+......|+|+||+.|+.. +.......++++|||||||+.+-.. +| .+..|..+....+++
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~ 175 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCC
Confidence 111 112234568999999988743 2222234578999999999744322 22 223455555667899
Q ss_pred eEEEeccCcCHH---HHHHHhC-CCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 000790 732 KLIVTSATLNAQ---KFSDFFG-SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 807 (1283)
Q Consensus 732 klIlmSATld~e---~fa~~f~-~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe 807 (1283)
++|++|||++.. .+...++ ..|.+.+.....| .+.|........+ ..++.+.....++++||||+++++++
T Consensus 176 ~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 176 PFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred cEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 999999999643 3344443 3455444332222 1222211111111 12222222345678999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccce
Q 000790 808 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 887 (1283)
Q Consensus 808 ~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~ 887 (1283)
.++..|.+ .++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+
T Consensus 251 ~la~~L~~-------------~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~------- 310 (607)
T PRK11057 251 DTAARLQS-------------RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH------- 310 (607)
T ss_pred HHHHHHHh-------------CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE-------
Confidence 99998865 2678999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 888 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 888 ~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|| .|.|.++|+||+|||||.| +|.|+.||+..++
T Consensus 311 -~d----------~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 311 -FD----------IPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -eC----------CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 66 6899999999999999999 6999999998765
No 40
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=322.19 Aligned_cols=315 Identities=20% Similarity=0.239 Sum_probs=236.7
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-----CEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
.+.-..++|...|+..+-+++++.||.||||||.+|.+++++.++-.. .+|+|++|||+||+|++....+ +..-
T Consensus 200 Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~q-laqF 278 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQ-LAQF 278 (691)
T ss_pred CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHH-HHhh
Confidence 444667999999999999999999999999999999999999865432 3799999999999998765432 2222
Q ss_pred cCCeeeEEEeeeec------cCCCceEEEechhHHHHHHccCC--CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC
Q 000790 658 LGDKVGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKDS--DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 658 lG~~VGy~ir~e~~------~s~~t~I~~~T~G~LLr~ll~d~--~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~ 729 (1283)
....||..+.+-+. ......|+++|||.|+.++.+.+ .|+++-++|||||+ |++...|.-.+-..+.....
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk 357 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPK 357 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccc
Confidence 23455555555442 23567899999999999998765 48999999999999 99988776555444444456
Q ss_pred CceEEEeccCc--CHHHHHHHhCCCCeEe-ec-Ccccc--eeeeecCC-ChhhHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 000790 730 DFKLIVTSATL--NAQKFSDFFGSVPIFH-IP-GRTFP--VNTLYSKT-PCEDYVEAAVKQAMTIHITSPPGDILIFMTG 802 (1283)
Q Consensus 730 dlklIlmSATl--d~e~fa~~f~~~pvi~-i~-gr~~p--V~i~y~~~-~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g 802 (1283)
+.|.++||||| .+..++..-.+.|+-. +. ....+ +...|... +..+....++...+... .-...++||+.+
T Consensus 358 ~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~r--tf~~~~ivFv~t 435 (691)
T KOG0338|consen 358 NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITR--TFQDRTIVFVRT 435 (691)
T ss_pred cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHH--hcccceEEEEeh
Confidence 78999999999 4778888877777632 22 21111 11112111 11111111111111111 114669999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcC
Q 000790 803 QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTG 882 (1283)
Q Consensus 803 ~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsG 882 (1283)
++.+..+.-+| .. .++.+.-|||+|++++|...++.|+++.+.|||||++|++||||++|..|||
T Consensus 436 Kk~AHRl~Ill-GL------------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN-- 500 (691)
T KOG0338|consen 436 KKQAHRLRILL-GL------------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN-- 500 (691)
T ss_pred HHHHHHHHHHH-HH------------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--
Confidence 99988775433 22 3788999999999999999999999999999999999999999999999999
Q ss_pred CccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 883 YGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 883 l~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|+ +|.+...|+||+||+.|.| .|..+.|..+.+-
T Consensus 501 ------y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 501 ------YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred ------cc----------CchhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 77 8999999999999999999 5999999998753
No 41
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=314.47 Aligned_cols=317 Identities=21% Similarity=0.249 Sum_probs=246.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-------CCCEEEEecchHHHHHHHHHHHHH
Q 000790 580 EQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-------TNGIVGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 580 ~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-------~~~~Il~tqPrR~LA~qvakrVa~ 652 (1283)
..-.+--.+++|.++|+....+++||-+|.||||||-+|..+++.+... .++..+|++|+|+||.||.... +
T Consensus 239 rk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea-K 317 (731)
T KOG0339|consen 239 RKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA-K 317 (731)
T ss_pred hhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHH-H
Confidence 3345567789999999999999999999999999999998888766443 3457788899999999997765 5
Q ss_pred HhccccCCeeeEEEeeee------ccCCCceEEEechhHHHHHHc-cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHH
Q 000790 653 EMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVV 725 (1283)
Q Consensus 653 e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll-~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il 725 (1283)
.|+.-.|..+.....+.. .....+.|++||||.|+.+.. ....|.+++++||||++ |++++.|+.++-....
T Consensus 318 kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 318 KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQ 396 (731)
T ss_pred HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHh
Confidence 555444433322222211 112578999999999999864 44679999999999999 9999999888777777
Q ss_pred HhcCCceEEEeccCc--CHHHHHHHhCCCCeEeecCcccc----e-eeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEE
Q 000790 726 ARRRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFP----V-NTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILI 798 (1283)
Q Consensus 726 ~~r~dlklIlmSATl--d~e~fa~~f~~~pvi~i~gr~~p----V-~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILV 798 (1283)
..+|+.|.|++|||+ .++.+++-|...||-.+.|..-. + ...+........+...+.. +-.....|++||
T Consensus 397 hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~---L~~f~S~gkvli 473 (731)
T KOG0339|consen 397 HIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRH---LVEFSSEGKVLI 473 (731)
T ss_pred hcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHH---hhhhccCCcEEE
Confidence 789999999999999 57888887777777665552211 1 0111111111112221211 112234789999
Q ss_pred EcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEE
Q 000790 799 FMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYV 878 (1283)
Q Consensus 799 Fl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~V 878 (1283)
|++...+++.++..|.- .++.|..+||.+.+.+|.+++..|+.+...|+|||+++++|+||+.+..|
T Consensus 474 fVTKk~~~e~i~a~Lkl-------------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTV 540 (731)
T KOG0339|consen 474 FVTKKADAEEIAANLKL-------------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTV 540 (731)
T ss_pred EEeccCCHHHHHHHhcc-------------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccccee
Confidence 99999999999887743 48999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 879 IDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 879 IDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
|+ || +-.+...+.||+||+||.|. |++|.|.|+.+-
T Consensus 541 vn--------yD----------~ardIdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 541 VN--------YD----------FARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred ec--------cc----------ccchhHHHHHHhhhcccccccceeeEEechhhH
Confidence 99 88 67788999999999999995 999999998765
No 42
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=305.25 Aligned_cols=308 Identities=21% Similarity=0.278 Sum_probs=238.0
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
..++|..+|+.|+.|+++|.+|.||||||++|.+++++..... +-..+|+.|||+||.|+++++ ..+|..++..+..
T Consensus 30 pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF-~alGk~l~lK~~v 108 (442)
T KOG0340|consen 30 PTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQF-IALGKLLNLKVSV 108 (442)
T ss_pred CCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHH-HHhcccccceEEE
Confidence 4589999999999999999999999999999999999876543 336788999999999999999 5677778877777
Q ss_pred EEeeeecc------CCCceEEEechhHHHHHHccCC-----CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCce
Q 000790 665 AIRFEDVT------GPSTLIKYMTDGVLLRETLKDS-----DLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFK 732 (1283)
Q Consensus 665 ~ir~e~~~------s~~t~I~~~T~G~LLr~ll~d~-----~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlk 732 (1283)
.+.+.+.. ....+++++|||.|-..+.++. .+.++.++|||||+ |.+..+|-- .|..+... .+..+
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d-~L~~i~e~lP~~RQ 186 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPD-ILEGIEECLPKPRQ 186 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhh-HHhhhhccCCCccc
Confidence 77777643 4578999999999998887763 38899999999999 888876543 34444433 34459
Q ss_pred EEEeccCcCHHHHHHHhCCCCeE-----e---ecCcccc--eeeeecCCChhhHH-HHHHHHHHHHhhcCCCCCEEEEcC
Q 000790 733 LIVTSATLNAQKFSDFFGSVPIF-----H---IPGRTFP--VNTLYSKTPCEDYV-EAAVKQAMTIHITSPPGDILIFMT 801 (1283)
Q Consensus 733 lIlmSATld~e~fa~~f~~~pvi-----~---i~gr~~p--V~i~y~~~~~~dyv-~~~v~~~l~i~~~~~~G~ILVFl~ 801 (1283)
.+++|||++-. +...|+ +|+- . ++|...+ +...|.. +..++ +..+-.++.....++.+.++||++
T Consensus 187 tLlfSATitd~-i~ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~--~~~~vkdaYLv~~Lr~~~~~~~~simIFvn 262 (442)
T KOG0340|consen 187 TLLFSATITDT-IKQLFG-CPITKSIAFELEVIDGVSTVETLYQGYIL--VSIDVKDAYLVHLLRDFENKENGSIMIFVN 262 (442)
T ss_pred eEEEEeehhhH-HHHhhc-CCcccccceEEeccCCCCchhhhhhheee--cchhhhHHHHHHHHhhhhhccCceEEEEee
Confidence 99999999321 233332 2221 1 1121111 1111111 11222 222233333333446899999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEc
Q 000790 802 GQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDT 881 (1283)
Q Consensus 802 g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDs 881 (1283)
+..+++.++..|... ++.+..+||.|++.+|...+..|+.+..+|||||++|.+|+|||.|.+|||
T Consensus 263 ttr~cQ~l~~~l~~l-------------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN- 328 (442)
T KOG0340|consen 263 TTRECQLLSMTLKNL-------------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN- 328 (442)
T ss_pred hhHHHHHHHHHHhhh-------------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe-
Confidence 999999888877653 889999999999999999999999999999999999999999999999999
Q ss_pred CCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 882 GYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 882 Gl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
|| .|..+..|+||+||+.|+|. |.++.++|+.+.
T Consensus 329 -------~d----------iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 329 -------HD----------IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred -------cC----------CCCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 88 89999999999999999995 999999997664
No 43
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=314.02 Aligned_cols=334 Identities=20% Similarity=0.253 Sum_probs=239.4
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--------CCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
.--...+|.+.|+.|+++++++|.++||||||++++++|++.+.. .+...+|++|||+||.|++..+.+.+.
T Consensus 157 i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 157 ISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred cCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 335678999999999999999999999999999999999886543 245789999999999999999977766
Q ss_pred cccCCeeeEEEeeeeccC------CCceEEEechhHHHHHHccCC--CCCCCceEEEcCCCcCCcchhHHH---HHHHHH
Q 000790 656 TELGDKVGYAIRFEDVTG------PSTLIKYMTDGVLLRETLKDS--DLDKYRVIVMDEAHERSLSTDVLF---GILKKV 724 (1283)
Q Consensus 656 ~~lG~~VGy~ir~e~~~s------~~t~I~~~T~G~LLr~ll~d~--~L~~~s~IIIDEaHERsl~tD~ll---~lLk~i 724 (1283)
..-=..-|+.+.++...+ .+..|++.|||.|++++.+.. .++++..||+||++ |.++..|-- .+|+.+
T Consensus 237 ~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAV 315 (708)
T ss_pred CceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHH
Confidence 432223356666776554 467899999999999998654 47889999999999 666655422 223322
Q ss_pred H----HhcC------CceEEEeccCc--CHHHHHHHhCCCCeEeecCcc----cc-------------------------
Q 000790 725 V----ARRR------DFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRT----FP------------------------- 763 (1283)
Q Consensus 725 l----~~r~------dlklIlmSATl--d~e~fa~~f~~~pvi~i~gr~----~p------------------------- 763 (1283)
- .... .++-+++|||+ .+..+++.-...|++.--... .|
T Consensus 316 ~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeq 395 (708)
T KOG0348|consen 316 HSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQ 395 (708)
T ss_pred hhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHH
Confidence 1 1112 25678999999 477888766555554321000 00
Q ss_pred eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHh-hccc----cC----CCCCeEEE
Q 000790 764 VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQL-ISST----TR----EVPELLIL 834 (1283)
Q Consensus 764 V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l-~~~~----~~----~~~~l~Il 834 (1283)
+...|...|+.-.+-.....+.+.....+..++|||+.+.+.++--+..|.+.+-.- .... .. ....+.++
T Consensus 396 L~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~ 475 (708)
T KOG0348|consen 396 LLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFY 475 (708)
T ss_pred hhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEE
Confidence 011122222222222333333344444556689999999999998888776644220 0000 00 11245689
Q ss_pred EecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcc
Q 000790 835 PIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGR 914 (1283)
Q Consensus 835 ~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGR 914 (1283)
-|||+|.+++|..+|+.|.....-||+||++|++|||+|+|++||. || .|.+.++|+||+||
T Consensus 476 rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd----------~P~s~adylHRvGR 537 (708)
T KOG0348|consen 476 RLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YD----------PPFSTADYLHRVGR 537 (708)
T ss_pred EecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eC----------CCCCHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998 99 79999999999999
Q ss_pred cCCCCC-CEEEEec--Chhhhhhhc
Q 000790 915 AGRTGP-GTCYRLY--TESAYLNEM 936 (1283)
Q Consensus 915 AGR~g~-G~cyrLy--t~~~~~~~m 936 (1283)
+.|.|. |....+. .+.+|.+.+
T Consensus 538 TARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 538 TARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred hhhccCCCceEEEecccHHHHHHHH
Confidence 999994 7665555 455665543
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.8e-32 Score=349.58 Aligned_cols=312 Identities=21% Similarity=0.212 Sum_probs=217.6
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--------CCCEEEEecchHHHHHHHHHHHHHHh----
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAKRVSEEM---- 654 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~LA~qvakrVa~e~---- 654 (1283)
.+++|.++++.+.+++++||++|||||||+++.++++..... .+..++|+.|+|+||.|+.+++.+.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999988876432 23469999999999999988764321
Q ss_pred ------cccc-CCeeeEEEeeeec--------cCCCceEEEechhHHHHHHccCC---CCCCCceEEEcCCCcCCc--ch
Q 000790 655 ------DTEL-GDKVGYAIRFEDV--------TGPSTLIKYMTDGVLLRETLKDS---DLDKYRVIVMDEAHERSL--ST 714 (1283)
Q Consensus 655 ------~~~l-G~~VGy~ir~e~~--------~s~~t~I~~~T~G~LLr~ll~d~---~L~~~s~IIIDEaHERsl--~t 714 (1283)
+..+ +..|+ +...+. ......|+++||+.|...+.... .|.++++|||||||+-.- ..
T Consensus 113 ~~~~~~g~~~~~i~v~--v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG 190 (876)
T PRK13767 113 EIAKERGEELPEIRVA--IRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRG 190 (876)
T ss_pred HHHHhcCCCcCCeeEE--EEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccH
Confidence 2222 22222 222221 12346899999999875553321 378999999999995221 11
Q ss_pred hHHHHHHHHHHHhc-CCceEEEeccCc-CHHHHHHHhCCC-------CeEeecCc---ccceeeeecCC----ChhhHH-
Q 000790 715 DVLFGILKKVVARR-RDFKLIVTSATL-NAQKFSDFFGSV-------PIFHIPGR---TFPVNTLYSKT----PCEDYV- 777 (1283)
Q Consensus 715 D~ll~lLk~il~~r-~dlklIlmSATl-d~e~fa~~f~~~-------pvi~i~gr---~~pV~i~y~~~----~~~dyv- 777 (1283)
..+...+..+.... +++++|++|||+ +.+.++.|+.+. ++..+... .+.+.+..... .....+
T Consensus 191 ~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~ 270 (876)
T PRK13767 191 VHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEIS 270 (876)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhH
Confidence 22233334443333 678999999999 788999988652 22222221 12222211100 000111
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCe
Q 000790 778 EAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR 857 (1283)
Q Consensus 778 ~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~r 857 (1283)
......+..+ ....+++||||+++..++.++..|.+.+... .....+.++||+|+.++|..+++.|++|.+
T Consensus 271 ~~l~~~L~~~--i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~-------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i 341 (876)
T PRK13767 271 EALYETLHEL--IKEHRTTLIFTNTRSGAERVLYNLRKRFPEE-------YDEDNIGAHHSSLSREVRLEVEEKLKRGEL 341 (876)
T ss_pred HHHHHHHHHH--HhcCCCEEEEeCCHHHHHHHHHHHHHhchhh-------ccccceeeeeCCCCHHHHHHHHHHHHcCCC
Confidence 1111111111 1235789999999999999999887643211 124678999999999999999999999999
Q ss_pred eEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC----CCEEEEec
Q 000790 858 KCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG----PGTCYRLY 927 (1283)
Q Consensus 858 KVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g----~G~cyrLy 927 (1283)
+|||||+++++|||||+|++||+ |+ .|.+.++|+||+|||||.+ .|.+|.+.
T Consensus 342 ~vLVaTs~Le~GIDip~Vd~VI~--------~~----------~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 342 KVVVSSTSLELGIDIGYIDLVVL--------LG----------SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred eEEEECChHHhcCCCCCCcEEEE--------eC----------CCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999998 55 6899999999999999863 37777653
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1e-31 Score=334.41 Aligned_cols=301 Identities=19% Similarity=0.193 Sum_probs=217.8
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEE
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI 666 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~i 666 (1283)
..++|.++++++..++++++++|||+|||+++.++++.. ++.++|++|+++|+.+....+.. ++ ..+.+..
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~-~g----i~~~~~~ 84 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRA-AG----VAAAYLN 84 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHH-cC----CcEEEEe
Confidence 458999999999999999999999999999988776643 46788899999999999888854 33 3333221
Q ss_pred eeee----------ccCCCceEEEechhHHHHHHc-cCCCCCCCceEEEcCCCcCCcc-hhHH--HHHHHHHHHhcCCce
Q 000790 667 RFED----------VTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLS-TDVL--FGILKKVVARRRDFK 732 (1283)
Q Consensus 667 r~e~----------~~s~~t~I~~~T~G~LLr~ll-~d~~L~~~s~IIIDEaHERsl~-tD~l--l~lLk~il~~r~dlk 732 (1283)
...+ .......|+|+||+.|..... ......++++|||||||+-+.. .||- +..+..+....++.+
T Consensus 85 s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 85 STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCC
Confidence 1111 123456899999998864322 2223568999999999974432 2332 233445555567778
Q ss_pred EEEeccCcCHH---HHHHHhCC-CCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHH
Q 000790 733 LIVTSATLNAQ---KFSDFFGS-VPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEA 808 (1283)
Q Consensus 733 lIlmSATld~e---~fa~~f~~-~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~ 808 (1283)
+|++|||++.. .+..+++- .+...+.+.. ...+.|......+... .+...+. ....+++||||+++.+++.
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~nl~~~v~~~~~~~~-~l~~~l~---~~~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFD-RPNLRFSVVKKNNKQK-FLLDYLK---KHRGQSGIIYASSRKKVEE 239 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC-CCCcEEEEEeCCCHHH-HHHHHHH---hcCCCCEEEEECcHHHHHH
Confidence 99999999644 45555542 2222222211 1222332111111111 1111121 2235789999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCcccee
Q 000790 809 ACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV 888 (1283)
Q Consensus 809 l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~ 888 (1283)
++..|.. .++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+
T Consensus 240 la~~L~~-------------~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~-------- 298 (591)
T TIGR01389 240 LAERLES-------------QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH-------- 298 (591)
T ss_pred HHHHHHh-------------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------
Confidence 9998864 2677899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 889 YNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 889 yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|| .|.|..+|.||+|||||.| +|.|+.+|+..++
T Consensus 299 ~~----------~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 299 YD----------MPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred cC----------CCCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 55 6899999999999999999 6999999998765
No 46
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.98 E-value=6.7e-32 Score=332.67 Aligned_cols=336 Identities=20% Similarity=0.225 Sum_probs=264.6
Q ss_pred hhhccccchhhhhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-------CCCEEE
Q 000790 562 HMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-------TNGIVG 634 (1283)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-------~~~~Il 634 (1283)
+.+.|.......++...+++-.+-+..++|.++|++|..+++||.+|.||||||..|.++++.+... .++..+
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~l 442 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIAL 442 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEE
Confidence 4455666666667777777777889999999999999999999999999999999998888876543 256788
Q ss_pred EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeecc------CCCceEEEechhHHHHHHccCC----CCCCCceEEE
Q 000790 635 CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT------GPSTLIKYMTDGVLLRETLKDS----DLDKYRVIVM 704 (1283)
Q Consensus 635 ~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~------s~~t~I~~~T~G~LLr~ll~d~----~L~~~s~III 704 (1283)
++.|||+||+|+.+.+.. |.+.+|..+.......+.. ..++.|+|||+|.++..+..+. .|.++.++|+
T Consensus 443 i~aPtrela~QI~r~~~k-f~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 443 ILAPTRELAMQIHREVRK-FLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EEcCCHHHHHHHHHHHHH-HHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeee
Confidence 999999999999999854 4444665544333333321 2468999999999998876543 3777789999
Q ss_pred cCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC--HHHHHHHhCCCCeE-eecCcccc---eeeeecCCChhhHHH
Q 000790 705 DEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN--AQKFSDFFGSVPIF-HIPGRTFP---VNTLYSKTPCEDYVE 778 (1283)
Q Consensus 705 DEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld--~e~fa~~f~~~pvi-~i~gr~~p---V~i~y~~~~~~dyv~ 778 (1283)
|||+ |.+++.|.....+.+...+|+.|+|++|||+. ++.++.-....|+- .+.|+..- |...+.-.+ ..-+
T Consensus 522 deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~--~e~e 598 (997)
T KOG0334|consen 522 DEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCA--IENE 598 (997)
T ss_pred chhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEec--CchH
Confidence 9999 89988888888887777899999999999994 66777766667764 33344321 111111111 1122
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCee
Q 000790 779 AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRK 858 (1283)
Q Consensus 779 ~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rK 858 (1283)
..++....+......+++||||..++.+..|...|.+ .++.+..|||+.++.+|..+++.|+++..+
T Consensus 599 Kf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-------------ag~~~~slHGgv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 599 KFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQK-------------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh-------------cCcchhhhcCCCchHHHHhHHHHHhccCce
Confidence 2333334444455589999999999999999988874 478888899999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 859 CIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 859 VLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
+||||+++++|+|+..+.+||+ || +|...+.|+||+||+||+|+ |.||.|.++++.
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred EEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHHHhcccccCCccceeEEEeChHHh
Confidence 9999999999999999999999 88 89999999999999999996 999999998543
No 47
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=9.6e-32 Score=300.31 Aligned_cols=314 Identities=21% Similarity=0.223 Sum_probs=244.3
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--------CCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
.-...|+|.++++.+++++++|.++.||+|||++++++-+.+... .+..++++.|||+||.|+.-.+.++.-
T Consensus 240 FqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy 319 (629)
T KOG0336|consen 240 FQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY 319 (629)
T ss_pred CCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh
Confidence 344568899999999999999999999999999987764443221 245789999999999999877766543
Q ss_pred cccCCeeeEEE--eeee--ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC
Q 000790 656 TELGDKVGYAI--RFED--VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD 730 (1283)
Q Consensus 656 ~~lG~~VGy~i--r~e~--~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d 730 (1283)
..+-..+-|+. |.+. ....+..|+++|||.|....+.+ ..|..+.++|||||+ |++++.|-.++-+.++..+|+
T Consensus 320 ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPD 398 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPD 398 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCc
Confidence 33322332322 2221 22457789999999999887765 459999999999999 999999999999999999999
Q ss_pred ceEEEeccCc--CHHHHHHHhCCCCeEeecCccc-----ceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 000790 731 FKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTF-----PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ 803 (1283)
Q Consensus 731 lklIlmSATl--d~e~fa~~f~~~pvi~i~gr~~-----pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~ 803 (1283)
.++|++|||. .+..++.-+...|++...|..- .|..++......+.+ ..+...+.. .....++||||..+
T Consensus 399 RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~--ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 399 RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVAN--MSSNDKVIIFVSRK 475 (629)
T ss_pred ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHh--cCCCceEEEEEech
Confidence 9999999999 4677887777778777666543 233333222222222 111111111 24567899999888
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCC
Q 000790 804 DEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGY 883 (1283)
Q Consensus 804 ~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl 883 (1283)
.-++.+...|. ..++..-.|||+-.+.+|+..++.|+.|..+|||||++|.+|||+++|++|+|
T Consensus 476 ~~AD~LSSd~~-------------l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--- 539 (629)
T KOG0336|consen 476 VMADHLSSDFC-------------LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--- 539 (629)
T ss_pred hhhhhccchhh-------------hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec---
Confidence 76666655442 24788889999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 884 GKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 884 ~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
|| +|...+.|+||+||+||+|. |..+.+++..+.
T Consensus 540 -----yD----------FP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 540 -----YD----------FPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred -----cC----------CCccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 88 89999999999999999995 999999998775
No 48
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.6e-31 Score=283.67 Aligned_cols=310 Identities=17% Similarity=0.232 Sum_probs=234.9
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
...+|+.++..|..+++||..+..|+|||..+..-++...-- ....++|+.|+|+||.|+.+.+. .+|...+..+--
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~-alg~~mnvq~ha 128 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVIL-ALGDYMNVQCHA 128 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHH-HhcccccceEEE
Confidence 457899999999999999999999999998765555543211 23479999999999999998884 344333333222
Q ss_pred EEeeee------ccCCCceEEEechhHHHHHHccCCC-CCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 665 AIRFED------VTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 665 ~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d~~-L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+.+.+ ...-+.+++..|||..+.++....+ -..+.++|+|||+| .++-.|--.+........|+.++|++|
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~S 207 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVS 207 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEe
Confidence 222222 2234678899999999988765433 56789999999996 455555555555555667899999999
Q ss_pred cCcC--HHHHHHHhCCCCeEeecCcc-cc---eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 738 ATLN--AQKFSDFFGSVPIFHIPGRT-FP---VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 738 ATld--~e~fa~~f~~~pvi~i~gr~-~p---V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
||++ .-...++|...|+-....+. .+ ++.+|....-++ .....++.++-+..-.+.+|||+++..++.+.+
T Consensus 208 ATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee---wKfdtLcdLYd~LtItQavIFcnTk~kVdwLte 284 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE---WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 284 (400)
T ss_pred ccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhh---hhHhHHHHHhhhhehheEEEEecccchhhHHHH
Confidence 9995 44556677777763332221 22 344454433222 234455555554556679999999999988877
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
.+.+ ..+.|..+||.|++++|.+|...|+.|..+|||+|++-++|||+|.|.+||| ||
T Consensus 285 km~~-------------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YD- 342 (400)
T KOG0328|consen 285 KMRE-------------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD- 342 (400)
T ss_pred HHHh-------------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cC-
Confidence 7655 3789999999999999999999999999999999999999999999999999 88
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
.|.....|+||+||.||.| .|+++-+...++.
T Consensus 343 ---------LP~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 343 ---------LPNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred ---------CCccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 7999999999999999999 5999999988765
No 49
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=312.06 Aligned_cols=312 Identities=20% Similarity=0.182 Sum_probs=231.2
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC------------CCEEEEecchHHHHHHHHHHHH
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT------------NGIVGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~------------~~~Il~tqPrR~LA~qvakrVa 651 (1283)
+--..++|+-.|+.|..++++++||+||||||.++++++++.++.. .+.++++.|||+||.|++.+..
T Consensus 94 ~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~ 173 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR 173 (482)
T ss_pred ccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH
Confidence 3344588999999999999999999999999999999998865542 3578999999999999999986
Q ss_pred HHhcccc-CCeeeEEEeee----eccCCCceEEEechhHHHHHHcc-CCCCCCCceEEEcCCCcCCcc-hhHHHHHHHHH
Q 000790 652 EEMDTEL-GDKVGYAIRFE----DVTGPSTLIKYMTDGVLLRETLK-DSDLDKYRVIVMDEAHERSLS-TDVLFGILKKV 724 (1283)
Q Consensus 652 ~e~~~~l-G~~VGy~ir~e----~~~s~~t~I~~~T~G~LLr~ll~-d~~L~~~s~IIIDEaHERsl~-tD~ll~lLk~i 724 (1283)
+..+... -..++|.-.-. ......+.|+++|+|.|...+-. ...|.++.+||||||+ |+++ +.|...+=+.+
T Consensus 174 k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv 252 (482)
T KOG0335|consen 174 KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIV 252 (482)
T ss_pred hhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHh
Confidence 6544321 12223322110 12346789999999999987754 3569999999999999 8888 77776665555
Q ss_pred HHhc----CCceEEEeccCc--CHHHHHHHhCCC-CeEee---cCccc-ceeeeecCCChhhHHHHHHHHHHHHhh-cCC
Q 000790 725 VARR----RDFKLIVTSATL--NAQKFSDFFGSV-PIFHI---PGRTF-PVNTLYSKTPCEDYVEAAVKQAMTIHI-TSP 792 (1283)
Q Consensus 725 l~~r----~dlklIlmSATl--d~e~fa~~f~~~-pvi~i---~gr~~-pV~i~y~~~~~~dyv~~~v~~~l~i~~-~~~ 792 (1283)
.... ...+.+++|||. +...++.+|... .++.- -|..- .+........ +.+....+..++.... ...
T Consensus 253 ~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~-~~~kr~~Lldll~~~~~~~~ 331 (482)
T KOG0335|consen 253 EQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN-EMEKRSKLLDLLNKDDGPPS 331 (482)
T ss_pred cccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec-chhhHHHHHHHhhcccCCcc
Confidence 4432 367999999999 455566666432 32211 12221 1111111111 1122222222222111 112
Q ss_pred CC-----CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCccc
Q 000790 793 PG-----DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAE 867 (1283)
Q Consensus 793 ~G-----~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAE 867 (1283)
.+ .+||||.+++.+..+...|.. ..+...++||...+.+|...+..|+.|...|||||||++
T Consensus 332 ~~~~~~e~tlvFvEt~~~~d~l~~~l~~-------------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa 398 (482)
T KOG0335|consen 332 DGEPKWEKTLVFVETKRGADELAAFLSS-------------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA 398 (482)
T ss_pred cCCcccceEEEEeeccchhhHHHHHHhc-------------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh
Confidence 34 799999999999999888854 488899999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecC
Q 000790 868 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYT 928 (1283)
Q Consensus 868 tGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt 928 (1283)
+|||||+|++||+ || .|....+|+||+||+||.|. |.++.||.
T Consensus 399 RGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 399 RGLDIPNVKHVIN--------YD----------MPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred cCCCCCCCceeEE--------ee----------cCcchhhHHHhccccccCCCCceeEEEec
Confidence 9999999999999 88 89999999999999999996 99999998
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=9.3e-30 Score=325.24 Aligned_cols=300 Identities=19% Similarity=0.237 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHHHhC------CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 585 LPIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~------qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
...++.|.++++.|..+ .+++|+|+||||||.++..+++.... .+.++++++||++||.|+++.+.+.+. .+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~g~qvlvLvPT~~LA~Q~~~~f~~~~~-~~ 527 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-DGKQVAVLVPTTLLAQQHFETFKERFA-NF 527 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-hCCeEEEEeCcHHHHHHHHHHHHHHhc-cC
Confidence 34579999999999875 78999999999999999888776643 357899999999999999999976554 34
Q ss_pred CCeeeEEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc
Q 000790 659 GDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR 728 (1283)
Q Consensus 659 G~~VGy~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r 728 (1283)
+..++...++.. .......|+++|+..+ ..+..+.++++|||||+|..+. .....+....
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv------~~~~~L~~~~ 597 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGV------KQKEKLKELR 597 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccch------hHHHHHHhcC
Confidence 444443333221 1123578999999543 2345688999999999995322 1222233345
Q ss_pred CCceEEEeccCcCHHHHHHHhCC---CCeEee-cCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 000790 729 RDFKLIVTSATLNAQKFSDFFGS---VPIFHI-PGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQD 804 (1283)
Q Consensus 729 ~dlklIlmSATld~e~fa~~f~~---~pvi~i-~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~ 804 (1283)
++.++|+||||+....+...+.+ ..++.. +....|+..++..... ..+..++. ..+ ..+++++||||+.+
T Consensus 598 ~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~~i~----~el-~~g~qv~if~n~i~ 671 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVREAIR----REL-LRGGQVFYVHNRIE 671 (926)
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHHHHH----HHH-HcCCeEEEEECCcH
Confidence 67899999999976655443322 122222 2223466555543221 11111111 111 23689999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCc
Q 000790 805 EIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYG 884 (1283)
Q Consensus 805 eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~ 884 (1283)
+++.++..|.+. .+++.+..+||+|+..+|..+++.|.+|+.+|||||+++++|||||++++||.
T Consensus 672 ~~e~l~~~L~~~-----------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi---- 736 (926)
T TIGR00580 672 SIEKLATQLREL-----------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII---- 736 (926)
T ss_pred HHHHHHHHHHHh-----------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----
Confidence 999998888653 25688999999999999999999999999999999999999999999999997
Q ss_pred cceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChh
Q 000790 885 KMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTES 930 (1283)
Q Consensus 885 K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~ 930 (1283)
||+. ..+.++|.||+||+||.| .|.||.|++..
T Consensus 737 ----~~a~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ----ERAD---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ----ecCC---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 5521 234568999999999999 59999999754
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=5.9e-30 Score=319.16 Aligned_cols=341 Identities=15% Similarity=0.141 Sum_probs=213.3
Q ss_pred CHHHHHHHHHHHHhCC-eEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecchHHHHHHHHHHHHHHhcccc-----
Q 000790 587 IFSVRDELLQVIRENQ-VVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTEL----- 658 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~q-vvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~LA~qvakrVa~e~~~~l----- 658 (1283)
.+++|.++++.+..|+ ++++.+|||||||.++..|++...... ...+++++|||+||.|+++.+.. ++..+
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~-~~k~l~~~~~ 94 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK-IGERLPDVPE 94 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH-HHHHhcccch
Confidence 8899999999999998 577789999999997766665321111 22566688999999999988744 44332
Q ss_pred ------------------CCeeeEEEeeeec------cCCCceEEEechhHHHHHHccC-------------CCCCCCce
Q 000790 659 ------------------GDKVGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKD-------------SDLDKYRV 701 (1283)
Q Consensus 659 ------------------G~~VGy~ir~e~~------~s~~t~I~~~T~G~LLr~ll~d-------------~~L~~~s~ 701 (1283)
+..|...+.+.+. ......|+++|..++...++.. ..|.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~ 174 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDAL 174 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceE
Confidence 1222222222221 1235689999976665544321 12788999
Q ss_pred EEEcCCCcCCcchhHHHHHHHHHHHhcC---CceEEEeccCcC--HHHHHHHhCCCCe-EeecCcccce--eeeecCCCh
Q 000790 702 IVMDEAHERSLSTDVLFGILKKVVARRR---DFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGRTFPV--NTLYSKTPC 773 (1283)
Q Consensus 702 IIIDEaHERsl~tD~ll~lLk~il~~r~---dlklIlmSATld--~e~fa~~f~~~pv-i~i~gr~~pV--~i~y~~~~~ 773 (1283)
|||||||..+...+.+..+++.+. ..+ ++|+++||||++ ...+...+...++ +.+....... ...|.....
T Consensus 175 LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~ 253 (844)
T TIGR02621 175 IVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSD 253 (844)
T ss_pred EEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecCh
Confidence 999999944333333333333321 122 369999999995 4455555554343 2222211111 112222222
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHH-----HH
Q 000790 774 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQA-----KI 848 (1283)
Q Consensus 774 ~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~-----~I 848 (1283)
...+...+..+..+ .....+++||||+++..++.++..|.+. ++ ..|||.|++.+|. .+
T Consensus 254 e~Kl~~lv~~L~~l-l~e~g~~vLVF~NTv~~Aq~L~~~L~~~-------------g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 254 EKFLSTMVKELNLL-MKDSGGAILVFCRTVKHVRKVFAKLPKE-------------KF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred HHHHHHHHHHHHHH-HhhCCCcEEEEECCHHHHHHHHHHHHhc-------------CC--eEeeCCCCHHHHhhHHHHHH
Confidence 22222223222222 2345688999999999999999988642 22 8899999999999 78
Q ss_pred HhHhcC----CC-------eeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCC
Q 000790 849 FEKAKE----GT-------RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGR 917 (1283)
Q Consensus 849 ~~~f~~----G~-------rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR 917 (1283)
++.|.+ |. .+|||||+++|+||||+. ++||+ ++ .| .++|+||+||+||
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~----------aP--~esyIQRiGRtgR 376 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DL----------AP--FESMQQRFGRVNR 376 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CC----------CC--HHHHHHHhcccCC
Confidence 888976 43 689999999999999997 67775 22 24 5899999999999
Q ss_pred CCC--CEEEEecChhhhhhhc-CCCCcchhhccchhHHHHHHhhcccCcccCC
Q 000790 918 TGP--GTCYRLYTESAYLNEM-LPSPVPEIQRTNLGNVVLLLKSLKIDNLLDF 967 (1283)
Q Consensus 918 ~g~--G~cyrLyt~~~~~~~m-~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f 967 (1283)
.|. |..+.+++.+ +.... ...--|+|+...+..+.+..+..|..+...|
T Consensus 377 ~G~~~~~~i~vv~~~-~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 377 FGELQACQIAVVHLD-LGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred CCCCCCceEEEEeec-cCCCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 985 3324444321 10110 1112367877777666665555554333333
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=2.7e-29 Score=316.12 Aligned_cols=300 Identities=18% Similarity=0.224 Sum_probs=212.9
Q ss_pred cCCCHHHHHHHHHHHHhC------CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 584 YLPIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~------qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
...++++|.++++.|..+ .+++++|+||||||.++..+++.... .+.++++++||++||.|+++.+.+.+ ..
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~g~q~lilaPT~~LA~Q~~~~l~~l~-~~ 336 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-AGYQAALMAPTEILAEQHYENLKKLL-EP 336 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccHHHHHHHHHHHHHHH-hh
Confidence 345789999999999876 48999999999999999888877643 46789999999999999999996554 34
Q ss_pred cCCeeeEEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh
Q 000790 658 LGDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 727 (1283)
Q Consensus 658 lG~~VGy~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~ 727 (1283)
+|..|+....... .......|+++|++.+.. ...+.++++|||||+|.-+.. ....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~------qr~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE------QRLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH------HHHHHHhc
Confidence 5556655444332 123468899999987642 235789999999999952221 11222233
Q ss_pred cCCceEEEeccCcCHHHHHH-HhCCCCeEee---cCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 000790 728 RRDFKLIVTSATLNAQKFSD-FFGSVPIFHI---PGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ 803 (1283)
Q Consensus 728 r~dlklIlmSATld~e~fa~-~f~~~pvi~i---~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~ 803 (1283)
....++|+||||+....++- +++...+..+ +....|+...+......+.+-..+.. . + ..+.+++||||..
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~---~-~-~~g~q~~v~~~~i 481 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIRE---E-I-AKGRQAYVVCPLI 481 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHH---H-H-HcCCcEEEEEccc
Confidence 44678999999996655443 3343333222 22223555554443322222111211 1 1 3467899999976
Q ss_pred HHH--------HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCe
Q 000790 804 DEI--------EAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI 875 (1283)
Q Consensus 804 ~eI--------e~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V 875 (1283)
++. +.+++.|.+. .+.+.+..+||+|+..+|..+++.|.+|..+|||||+++++|||+|++
T Consensus 482 e~s~~l~~~~~~~~~~~L~~~-----------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v 550 (681)
T PRK10917 482 EESEKLDLQSAEETYEELQEA-----------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNA 550 (681)
T ss_pred ccccchhHHHHHHHHHHHHHH-----------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCC
Confidence 543 3344444332 234789999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecC
Q 000790 876 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYT 928 (1283)
Q Consensus 876 ~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt 928 (1283)
++||+ ||+. ....+.+.||+||+||.| +|.||.+++
T Consensus 551 ~~VIi--------~~~~---------r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 551 TVMVI--------ENAE---------RFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cEEEE--------eCCC---------CCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99998 6632 124578999999999999 699999996
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=3.9e-30 Score=336.20 Aligned_cols=297 Identities=19% Similarity=0.222 Sum_probs=201.1
Q ss_pred EEccCCCChHHHHHHHHHHhccc------------CCCEEEEecchHHHHHHHHHHHHHHh----------c-cccCCee
Q 000790 606 VVGETGSGKTTQLTQYLLEDGYT------------TNGIVGCTQPRRVAAMSVAKRVSEEM----------D-TELGDKV 662 (1283)
Q Consensus 606 I~gpTGSGKTtqi~q~Lle~~~~------------~~~~Il~tqPrR~LA~qvakrVa~e~----------~-~~lG~~V 662 (1283)
|++|||||||+++.+++++..+. .+.+++|+.|+++|+.++.+.+...+ + ..++..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 58999999999999988776543 24589999999999999999875421 1 1133444
Q ss_pred eEEEeeee------ccCCCceEEEechhHHHHHHccC--CCCCCCceEEEcCCCcC-----CcchhHHHHHHHHHHHhcC
Q 000790 663 GYAIRFED------VTGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHER-----SLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 663 Gy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d--~~L~~~s~IIIDEaHER-----sl~tD~ll~lLk~il~~r~ 729 (1283)
+....... ......+|+++||+.|...+.+. ..|+++.+|||||+|+- +.+....+..|..++ ..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CC
Confidence 42221111 11235689999999997765543 35899999999999952 222223333333332 35
Q ss_pred CceEEEeccCc-CHHHHHHHhCCC-CeEeec---CcccceeeeecCCChhh------------------HHHHHH-HHHH
Q 000790 730 DFKLIVTSATL-NAQKFSDFFGSV-PIFHIP---GRTFPVNTLYSKTPCED------------------YVEAAV-KQAM 785 (1283)
Q Consensus 730 dlklIlmSATl-d~e~fa~~f~~~-pvi~i~---gr~~pV~i~y~~~~~~d------------------yv~~~v-~~~l 785 (1283)
++|+|++|||+ |.+.+++|+++. ++..+. .+..++.+++......+ .+...+ ..++
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 78999999999 889999999754 432221 12233332221110000 000011 1111
Q ss_pred HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhcc--------------cc------CCCCCeEEEEecCCCCHHHH
Q 000790 786 TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISS--------------TT------REVPELLILPIYSQLPADLQ 845 (1283)
Q Consensus 786 ~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~--------------~~------~~~~~l~Il~LHs~L~~~er 845 (1283)
.. .....++|||||++..++.++..|.+...+.... .. .....+.+..|||+|+.++|
T Consensus 239 ~~--i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DE--VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HH--HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 11 1235789999999999999999997654211000 00 00112447889999999999
Q ss_pred HHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC--CEE
Q 000790 846 AKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP--GTC 923 (1283)
Q Consensus 846 ~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~--G~c 923 (1283)
..|++.|++|.++|||||++++.||||++|++||+ |+ .|.|.++|+||+|||||... +.+
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~g----------sP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VA----------TPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eC----------CCCCHHHHHHHhCCCCCCCCCccEE
Confidence 99999999999999999999999999999999999 44 69999999999999999743 444
Q ss_pred E
Q 000790 924 Y 924 (1283)
Q Consensus 924 y 924 (1283)
+
T Consensus 379 l 379 (1490)
T PRK09751 379 L 379 (1490)
T ss_pred E
Confidence 4
No 54
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.6e-31 Score=286.36 Aligned_cols=307 Identities=20% Similarity=0.263 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC--CEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
.|+|++.|+..+.+++++.-|..|+|||-++..++++..-... -..+|++|+|+||.|+.+.+ .+++..+|..|-..
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc-~~lskh~~i~vmvt 187 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVC-KELSKHLGIKVMVT 187 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHH-HHHhcccCeEEEEe
Confidence 4789999999999999999999999999999999999765433 25688999999999987655 66776776555443
Q ss_pred Eeeeec------cCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 666 IRFEDV------TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 666 ir~e~~------~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
..+.+. .....++++.|||.++...... ..|+++.++|+|||+ ..+..||-..+-+.+....++.+++++||
T Consensus 188 tGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 188 TGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSA 266 (459)
T ss_pred cCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEec
Confidence 333321 2356789999999999987654 459999999999999 78888887666666666777899999999
Q ss_pred Cc--CHHHHHHHhCCCCe-EeecCccc--ceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 000790 739 TL--NAQKFSDFFGSVPI-FHIPGRTF--PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFAL 813 (1283)
Q Consensus 739 Tl--d~e~fa~~f~~~pv-i~i~gr~~--pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L 813 (1283)
|+ .+..|.+-+...|. +..-...- -|..+|.-......+ ..+..++ ....-.+.||||++...++-++..+
T Consensus 267 TFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKv-hCLntLf---skLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 267 TFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKV-HCLNTLF---SKLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred ccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhh-hhHHHHH---HHhcccceEEEeccchHhHHHHHHH
Confidence 99 45666655544443 33322221 233444322111111 1111111 1122457899999999999888877
Q ss_pred HHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCC
Q 000790 814 KERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKM 893 (1283)
Q Consensus 814 ~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~ 893 (1283)
.+. ++.+..+|+.|-++.|.++|..|++|.++.||||+.+.+||||++|++||| ||
T Consensus 343 Tel-------------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD--- 398 (459)
T KOG0326|consen 343 TEL-------------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD--- 398 (459)
T ss_pred Hhc-------------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cC---
Confidence 653 889999999999999999999999999999999999999999999999999 88
Q ss_pred CcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhh
Q 000790 894 GMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 894 g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
+|.+.++|+||+||+||.| .|.++.|.|-++
T Consensus 399 -------fpk~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 399 -------FPKNAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred -------CCCCHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 8999999999999999999 599999998554
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=3.2e-29 Score=326.40 Aligned_cols=300 Identities=18% Similarity=0.193 Sum_probs=212.2
Q ss_pred cCCCHHHHHHHHHHHHhC------CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 584 YLPIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~------qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
....++.|.++++.+..+ .+++++|+||||||.++..+++... ..+.+++|++||++||.|++..+.+.++.
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~- 675 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-ENHKQVAVLVPTTLLAQQHYDNFRDRFAN- 675 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHhhcc-
Confidence 345778999999999887 8999999999999998776655443 34678999999999999999999765542
Q ss_pred cCCeeeEEEeeeec----------cCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh
Q 000790 658 LGDKVGYAIRFEDV----------TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 727 (1283)
Q Consensus 658 lG~~VGy~ir~e~~----------~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~ 727 (1283)
.+..++...++... ......|+|+|++.|. .+..+.++++|||||+|.-+. .....+...
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahrfG~------~~~e~lk~l 745 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHRFGV------RHKERIKAM 745 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhhcch------hHHHHHHhc
Confidence 33344433333221 1235689999997542 334578999999999995322 122233344
Q ss_pred cCCceEEEeccCcCHHHH--HHHh-CCCCeEeecC-cccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 000790 728 RRDFKLIVTSATLNAQKF--SDFF-GSVPIFHIPG-RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ 803 (1283)
Q Consensus 728 r~dlklIlmSATld~e~f--a~~f-~~~pvi~i~g-r~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~ 803 (1283)
.++.++++||||+....+ +... .+..++..+. ...++..++..... ..+ ...+...+ ...|+++|||++.
T Consensus 746 ~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~-~~~----k~~il~el-~r~gqv~vf~n~i 819 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS-LVV----REAILREI-LRGGQVYYLYNDV 819 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCc-HHH----HHHHHHHH-hcCCeEEEEECCH
Confidence 678999999999855433 2222 2333333322 22445443322111 111 11111111 1368899999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCC
Q 000790 804 DEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGY 883 (1283)
Q Consensus 804 ~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl 883 (1283)
+.++.++..|.+.+ +++.|..+||+|++.+|..++..|.+|+.+|||||+++++|||||+|++||.
T Consensus 820 ~~ie~la~~L~~~~-----------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--- 885 (1147)
T PRK10689 820 ENIQKAAERLAELV-----------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--- 885 (1147)
T ss_pred HHHHHHHHHHHHhC-----------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE---
Confidence 99999998887542 4678899999999999999999999999999999999999999999999994
Q ss_pred ccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecCh
Q 000790 884 GKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTE 929 (1283)
Q Consensus 884 ~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~ 929 (1283)
+++. ..+.++|.||+||+||.| .|.||.++..
T Consensus 886 -----~~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 886 -----ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred -----ecCC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 2211 123467999999999999 5999998864
No 56
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.2e-30 Score=285.93 Aligned_cols=313 Identities=21% Similarity=0.261 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHhC--CeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHhccccCCeee
Q 000790 588 FSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~--qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VG 663 (1283)
..+|+.+|+.++.+ +++|..+..|+|||++|.+.++...-. ..+.++|+.|+|+||.|+.+.| ++||...+.+..
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~ 192 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTAS 192 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEE
Confidence 47888899988765 799999999999999999988875432 2357899999999999999888 889987788889
Q ss_pred EEEeeeeccC---CCceEEEechhHHHHHHcc--CCCCCCCceEEEcCCCcCCcchh-HHHHHHHHHHHhcCCceEEEec
Q 000790 664 YAIRFEDVTG---PSTLIKYMTDGVLLRETLK--DSDLDKYRVIVMDEAHERSLSTD-VLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 664 y~ir~e~~~s---~~t~I~~~T~G~LLr~ll~--d~~L~~~s~IIIDEaHERsl~tD-~ll~lLk~il~~r~dlklIlmS 737 (1283)
|.++...... -...|++.|+|.++.++.. -.++.++.++|+|||+ -++++. |--.-++......++.++|++|
T Consensus 193 yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFS 271 (477)
T KOG0332|consen 193 YAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFS 271 (477)
T ss_pred EEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeee
Confidence 9998874332 2457999999999998765 3458899999999999 455554 2222333333345689999999
Q ss_pred cCcC--HHHHHHHh-CCCCeEeecCc---ccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 738 ATLN--AQKFSDFF-GSVPIFHIPGR---TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 738 ATld--~e~fa~~f-~~~pvi~i~gr---~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
||.+ +..|+..+ .+..++.+..+ .++|..+|..-.+.+.--.++. .++-...-|+.||||.++..+..++.
T Consensus 272 ATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~---~lyg~~tigqsiIFc~tk~ta~~l~~ 348 (477)
T KOG0332|consen 272 ATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALV---NLYGLLTIGQSIIFCHTKATAMWLYE 348 (477)
T ss_pred chhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHH---HHHhhhhhhheEEEEeehhhHHHHHH
Confidence 9994 55666544 44444444332 3567777766555443323332 33333446899999999999999988
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
.|.. .+..|..+||.|..++|..|++.|+.|..||||+||+.++|||++.|.+||| ||-
T Consensus 349 ~m~~-------------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydl 407 (477)
T KOG0332|consen 349 EMRA-------------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDL 407 (477)
T ss_pred HHHh-------------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCC
Confidence 8765 3889999999999999999999999999999999999999999999999999 773
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChh
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTES 930 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~ 930 (1283)
... ...-.+.+.|+||+||+||.|. |.+|.|....
T Consensus 408 P~~----~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 408 PVK----YTGEPDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred ccc----cCCCCCHHHHHHHhcccccccccceEEEeeccc
Confidence 332 2234678999999999999995 9999988654
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=312.18 Aligned_cols=369 Identities=20% Similarity=0.227 Sum_probs=262.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-------CEEEEecchHHHHHHHHHHH
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-------GIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-------~~Il~tqPrR~LA~qvakrV 650 (1283)
....+ .--..+.|.++++.|.+|++++|+||||||||.++.++++......+ -.++++.|.|+|+..+-.++
T Consensus 15 ~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL 93 (814)
T COG1201 15 WFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRL 93 (814)
T ss_pred HHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHH
Confidence 33344 55567999999999999999999999999999999999988765541 26899999999999999999
Q ss_pred HHHhccccCCeeeEEEeeeecc--------CCCceEEEechhHHHHHHccC---CCCCCCceEEEcCCCc-----CCcch
Q 000790 651 SEEMDTELGDKVGYAIRFEDVT--------GPSTLIKYMTDGVLLRETLKD---SDLDKYRVIVMDEAHE-----RSLST 714 (1283)
Q Consensus 651 a~e~~~~lG~~VGy~ir~e~~~--------s~~t~I~~~T~G~LLr~ll~d---~~L~~~s~IIIDEaHE-----Rsl~t 714 (1283)
..++..+|..| .++..+.. ..-.+|+++||+.|.-.+... ..|.++.+|||||+|+ |+...
T Consensus 94 -~~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 94 -EEPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred -HHHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhh
Confidence 66667788777 45555532 234689999999987766553 3489999999999996 66666
Q ss_pred hHHHHHHHHHHHhcCCceEEEeccCc-CHHHHHHHhCCC----CeEeecC-cccceeeeecCCChhh---HHHHHHHHHH
Q 000790 715 DVLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFFGSV----PIFHIPG-RTFPVNTLYSKTPCED---YVEAAVKQAM 785 (1283)
Q Consensus 715 D~ll~lLk~il~~r~dlklIlmSATl-d~e~fa~~f~~~----pvi~i~g-r~~pV~i~y~~~~~~d---yv~~~v~~~l 785 (1283)
-+.+.-|+.+. ++++-|++|||+ +.+.+++|+.+. .++.+.+ +.+.+.+........+ .....+..+.
T Consensus 171 sl~LeRL~~l~---~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~ 247 (814)
T COG1201 171 ALSLERLRELA---GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIA 247 (814)
T ss_pred hhhHHHHHhhC---cccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHH
Confidence 55555555543 389999999999 899999999764 3444443 3333444333222111 1122233322
Q ss_pred HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCc
Q 000790 786 TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNI 865 (1283)
Q Consensus 786 ~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnI 865 (1283)
.+. +....+|||+||+..++.++..|.+.. ...+..+||+|+.+.|..+++.|++|..++||||+.
T Consensus 248 ~~v--~~~~ttLIF~NTR~~aE~l~~~L~~~~------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSS 313 (814)
T COG1201 248 ELV--KKHRTTLIFTNTRSGAERLAFRLKKLG------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSS 313 (814)
T ss_pred HHH--hhcCcEEEEEeChHHHHHHHHHHHHhc------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccc
Confidence 222 223589999999999999999887642 377899999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC----CCEEEEecChhhhhhhc-----
Q 000790 866 AETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG----PGTCYRLYTESAYLNEM----- 936 (1283)
Q Consensus 866 AEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g----~G~cyrLyt~~~~~~~m----- 936 (1283)
+|.||||.+|+.||+ |+ .|.+.+.+.||+||+|+.- .|..|... ..+..+..
T Consensus 314 LELGIDiG~vdlVIq--------~~----------SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 314 LELGIDIGDIDLVIQ--------LG----------SPKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred hhhccccCCceEEEE--------eC----------CcHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHHHHHHH
Confidence 999999999999999 44 7999999999999999754 35555554 22221111
Q ss_pred ---CCCCcchhhccchhHHHHHHhhcc------cCccc-----CCCCCCCCChhhHHHHHHHHHH
Q 000790 937 ---LPSPVPEIQRTNLGNVVLLLKSLK------IDNLL-----DFDFMDPPPQENILNSMYQLWV 987 (1283)
Q Consensus 937 ---~~~~~PEI~r~~L~~vvL~Lk~lg------i~~l~-----~f~fldpP~~~~i~~al~~L~~ 987 (1283)
-....++|..-+|+-+.-++-++- ++++. .++|-+ -+.+.+...++.|..
T Consensus 375 a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 375 ALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred HHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 011234555556654444433322 22111 123433 245667777777776
No 58
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.9e-30 Score=293.80 Aligned_cols=326 Identities=21% Similarity=0.252 Sum_probs=232.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHh---------CCeEEEEccCCCChHHHHHHHHHHhcccCC---CEEEEecchHHHHH
Q 000790 577 TLAEQRQYLPIFSVRDELLQVIRE---------NQVVVVVGETGSGKTTQLTQYLLEDGYTTN---GIVGCTQPRRVAAM 644 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~I~~---------~qvvII~gpTGSGKTtqi~q~Lle~~~~~~---~~Il~tqPrR~LA~ 644 (1283)
.++.+...--.|++|..+++.|+. .++|.|.||||||||+++.++|+....... -+++|++|++.||.
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELAL 229 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHH
Confidence 344455556678899998888842 579999999999999999999988765532 36889999999999
Q ss_pred HHHHHHHHHhccccCCeeeEEEeeeec-------cC----CCceEEEechhHHHHHHccC--CCCCCCceEEEcCCCcCC
Q 000790 645 SVAKRVSEEMDTELGDKVGYAIRFEDV-------TG----PSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERS 711 (1283)
Q Consensus 645 qvakrVa~e~~~~lG~~VGy~ir~e~~-------~s----~~t~I~~~T~G~LLr~ll~d--~~L~~~s~IIIDEaHERs 711 (1283)
||+..+ +.+....|..|+......+. .+ ....|++.|||.|.+++-+. ..|.++.++|||||+ |.
T Consensus 230 QV~~~f-~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rl 307 (620)
T KOG0350|consen 230 QVYDTF-KRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RL 307 (620)
T ss_pred HHHHHH-HHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HH
Confidence 999998 44555566666643333221 11 13489999999999998754 459999999999999 55
Q ss_pred cchhH------HHHHHH---------HHHH-------------------hcCCceEEEeccCc--CHHHHHHHhCCCC-e
Q 000790 712 LSTDV------LFGILK---------KVVA-------------------RRRDFKLIVTSATL--NAQKFSDFFGSVP-I 754 (1283)
Q Consensus 712 l~tD~------ll~lLk---------~il~-------------------~r~dlklIlmSATl--d~e~fa~~f~~~p-v 754 (1283)
++.-| ++.+++ .++. ..+.+.-+++|||+ ++.++.++-.+.| +
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl 387 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce
Confidence 54321 111111 1111 12345578899999 8899998877766 5
Q ss_pred EeecCc---ccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCe
Q 000790 755 FHIPGR---TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPEL 831 (1283)
Q Consensus 755 i~i~gr---~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l 831 (1283)
+.+.+. .|.+........+..........+........-..+|+|+++.+.+..++..|.-.++ ....
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~---------~~~~ 458 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC---------SDNF 458 (620)
T ss_pred EEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc---------cccc
Confidence 555431 1211111111110000000001111111223456899999999999999998873332 2355
Q ss_pred EEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHH
Q 000790 832 LILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQR 911 (1283)
Q Consensus 832 ~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QR 911 (1283)
.+-.+.|+|....|.+++..|..|.+.|||||+++++|||+.+|+.||| || .|.+...|+||
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~~~ktyVHR 520 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPASDKTYVHR 520 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCchhhHHHHh
Confidence 6666899999999999999999999999999999999999999999999 99 79999999999
Q ss_pred hcccCCCCC-CEEEEecChhh
Q 000790 912 AGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 912 aGRAGR~g~-G~cyrLyt~~~ 931 (1283)
+||++|+|. |.||.|.+...
T Consensus 521 ~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 521 AGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hcccccccCCceEEEeecccc
Confidence 999999995 99999998654
No 59
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=300.10 Aligned_cols=440 Identities=19% Similarity=0.217 Sum_probs=293.8
Q ss_pred HHHHHHHHHH-HhCCeEEEEccCCCChHHHHHHHHHHhccc---------CCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 589 SVRDELLQVI-RENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 589 ~~Q~eil~~I-~~~qvvII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
.+|.++.+.+ ..|.+.|||||||||||-.+.+.|+..... .+-+|++++|.++||.++++.+.+.++ .+
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cc
Confidence 5777777765 578899999999999999999888876542 345899999999999999998877665 34
Q ss_pred CCeeeEEEeeeecc----CCCceEEEechhHH---HHHHccC-CCCCCCceEEEcCCCc----CCcchhHHHHHHHHHH-
Q 000790 659 GDKVGYAIRFEDVT----GPSTLIKYMTDGVL---LRETLKD-SDLDKYRVIVMDEAHE----RSLSTDVLFGILKKVV- 725 (1283)
Q Consensus 659 G~~VGy~ir~e~~~----s~~t~I~~~T~G~L---Lr~ll~d-~~L~~~s~IIIDEaHE----Rsl~tD~ll~lLk~il- 725 (1283)
|..|+-- .++... -..|+|++.||+-. .|....+ .+++.+.+|||||+|. |+.-.+.+...+.++.
T Consensus 192 gi~v~EL-TGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 192 GISVREL-TGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred cceEEEe-cCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 5555421 112111 24789999999864 2332222 3478899999999993 7766666655544443
Q ss_pred HhcCCceEEEeccCc-CHHHHHHHhCCC---CeEeecCcccceee--eecCCChh--hHHHHHHHHHHH---HhhcCCCC
Q 000790 726 ARRRDFKLIVTSATL-NAQKFSDFFGSV---PIFHIPGRTFPVNT--LYSKTPCE--DYVEAAVKQAMT---IHITSPPG 794 (1283)
Q Consensus 726 ~~r~dlklIlmSATl-d~e~fa~~f~~~---pvi~i~gr~~pV~i--~y~~~~~~--dyv~~~v~~~l~---i~~~~~~G 794 (1283)
.....++||++|||+ |.++++.|++-. .++.+.++..||.. .+...... ......+..++. +.....+.
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~ 350 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGH 350 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCC
Confidence 345679999999999 999999999863 46666666555443 33322221 111111222211 11224578
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCC-CC---------CeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecC
Q 000790 795 DILIFMTGQDEIEAACFALKERMEQLISSTTRE-VP---------ELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN 864 (1283)
Q Consensus 795 ~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~-~~---------~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATn 864 (1283)
++||||+++.+...++..|.+..........-. .+ ...+..+|+||...+|..+...|..|.++|++||.
T Consensus 351 qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTa 430 (1230)
T KOG0952|consen 351 QVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTA 430 (1230)
T ss_pred eEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecc
Confidence 899999999999999999987654332111100 01 14577899999999999999999999999999999
Q ss_pred cccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEecChh--hhhhhcCCC
Q 000790 865 IAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES--AYLNEMLPS 939 (1283)
Q Consensus 865 IAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~~--~~~~~m~~~ 939 (1283)
+++.|+++|+--++| ....+||+..|-- .-.+.-..+|..|||||.+ .|..+.+-+.+ +++..|...
T Consensus 431 TLAwGVNLPA~aViI----KGT~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 431 TLAWGVNLPAYAVII----KGTQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred eeeeccCCcceEEEe----cCCcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcC
Confidence 999999999776666 3468899877632 3456678899999999998 47777666543 222333333
Q ss_pred Cc---------------chhhc---cchhHHHHHHhh------cccCccc---CCCCCC-CCCh-----hhHHHHHHHHH
Q 000790 940 PV---------------PEIQR---TNLGNVVLLLKS------LKIDNLL---DFDFMD-PPPQ-----ENILNSMYQLW 986 (1283)
Q Consensus 940 ~~---------------PEI~r---~~L~~vvL~Lk~------lgi~~l~---~f~fld-pP~~-----~~i~~al~~L~ 986 (1283)
+- .||.- ++++..|=.|+. |+.+... ....+. -|-. +.+..++..|-
T Consensus 503 ~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~ 582 (1230)
T KOG0952|consen 503 QNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELD 582 (1230)
T ss_pred CChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhh
Confidence 22 23322 233333333332 1111100 011111 1221 34455666665
Q ss_pred Hhccc--ccC-C--CCCHHHHHHHhCCCChHHHHHHHhhhh-cCchHHHHHHHHHhcC
Q 000790 987 VLGAL--NNV-G--ALTDLGWKMVEFPLDPPLAKMLLMGEQ-LGCLDEVLTIVSMLSV 1038 (1283)
Q Consensus 987 ~lgaL--d~~-g--~LT~lG~~ma~lPldp~lak~Ll~~~~-~gc~~e~l~I~a~ls~ 1038 (1283)
....+ |.. | ..|++|+.|+.+.|.....+.++.... +--.+++|.|+++-+.
T Consensus 583 ~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeE 640 (1230)
T KOG0952|consen 583 KVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEE 640 (1230)
T ss_pred hhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHh
Confidence 55333 433 2 579999999999999999999999988 6778888888877654
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.5e-29 Score=296.16 Aligned_cols=291 Identities=20% Similarity=0.214 Sum_probs=192.7
Q ss_pred eEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEE------ee-----ee
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI------RF-----ED 670 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~i------r~-----e~ 670 (1283)
+++|+||||||||++++++++..... ...+++|++|+++|+.|+++++...++..+|...|... .. +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 58999999999999999998876432 34689999999999999999998877754442222100 00 00
Q ss_pred c---------cCCCceEEEechhHHHHHHccCCC-------CCCCceEEEcCCCcCCcc-hhHHHHHHHHHHHhcCCceE
Q 000790 671 V---------TGPSTLIKYMTDGVLLRETLKDSD-------LDKYRVIVMDEAHERSLS-TDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 671 ~---------~s~~t~I~~~T~G~LLr~ll~d~~-------L~~~s~IIIDEaHERsl~-tD~ll~lLk~il~~r~dlkl 733 (1283)
. ......|+++|++.++..+..... .-.+++|||||||...-. .+++..+++.+. ..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCE
Confidence 0 012356999999999887665211 112489999999953322 234444444433 357899
Q ss_pred EEeccCcCHHHHHHHhCCCCeEeecCccccee------ee-ecC-CChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 000790 734 IVTSATLNAQKFSDFFGSVPIFHIPGRTFPVN------TL-YSK-TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE 805 (1283)
Q Consensus 734 IlmSATld~e~fa~~f~~~pvi~i~gr~~pV~------i~-y~~-~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~e 805 (1283)
|+||||++ +.+.+|+.......... .++.. .+ +.. ..........+..++. ....++++||||+++++
T Consensus 159 i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 159 LLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEERRFERHRFIKIESDKVGEISSLERLLE--FIKKGGKIAIIVNTVDR 234 (358)
T ss_pred EEEecCch-HHHHHHHhcCCCccccc-CCCCccccccccccceeeccccccCHHHHHHHHH--HhhCCCeEEEEECCHHH
Confidence 99999996 44566654322111110 01100 00 000 0000000111222221 12346899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHH----HHhHhcCCCeeEEEecCcccccCCCCCeeEEEEc
Q 000790 806 IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAK----IFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDT 881 (1283)
Q Consensus 806 Ie~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~----I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDs 881 (1283)
++.++..|.+.. ....+..+||++++.+|.. +++.|++|..+|||||+++++||||+ +++||+
T Consensus 235 ~~~~~~~L~~~~-----------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~- 301 (358)
T TIGR01587 235 AQEFYQQLKENA-----------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT- 301 (358)
T ss_pred HHHHHHHHHhhc-----------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE-
Confidence 999999887541 2356999999999999876 48899999999999999999999997 777775
Q ss_pred CCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-----CEEEEecChhh
Q 000790 882 GYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-----GTCYRLYTESA 931 (1283)
Q Consensus 882 Gl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-----G~cyrLyt~~~ 931 (1283)
| +.+..+|+||+||+||.|. |.+|.++....
T Consensus 302 -------~------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 302 -------E------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -------c------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 2 3456899999999999873 37787776543
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=7.3e-29 Score=310.20 Aligned_cols=301 Identities=17% Similarity=0.210 Sum_probs=207.6
Q ss_pred CCHHHHHHHHHHHHhC------CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccC
Q 000790 586 PIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 659 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~------qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG 659 (1283)
-+++.|.++++.|..+ .+.+|+|+||||||.++.++++.... .+.++++++||++||.|+++.+.+.+. .+|
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~g 312 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-AGYQVALMAPTEILAEQHYNSLRNLLA-PLG 312 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-cCCcEEEECCHHHHHHHHHHHHHHHhc-ccC
Confidence 3678999999999875 36899999999999998887776543 466899999999999999999976543 345
Q ss_pred CeeeEEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC
Q 000790 660 DKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 660 ~~VGy~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~ 729 (1283)
..++....... .......|+++|++.+.. ...+.++++|||||+|..+.. ... .+........
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~--qr~-~l~~~~~~~~ 385 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVE--QRK-KLREKGQGGF 385 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHH--HHH-HHHHhcccCC
Confidence 55544332211 123456899999987743 345789999999999953322 111 1111111112
Q ss_pred CceEEEeccCcCHHHHHH-HhCCCCeE---eecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 000790 730 DFKLIVTSATLNAQKFSD-FFGSVPIF---HIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE 805 (1283)
Q Consensus 730 dlklIlmSATld~e~fa~-~f~~~pvi---~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~e 805 (1283)
..++|+||||+....++. .++...+. ..+....|+...+...... ...+..+.. . ...+.+++|||+..++
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~-~-l~~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEE-E-IAKGRQAYVVYPLIEE 460 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHH-H-HHhCCcEEEEEccccc
Confidence 678999999986554443 22322221 2232234555555433221 111111111 1 1236789999998654
Q ss_pred --------HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeE
Q 000790 806 --------IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFY 877 (1283)
Q Consensus 806 --------Ie~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~ 877 (1283)
++.++..|.+. .+++.|..+||+|+.++|..+++.|.+|..+|||||+++++|||+|++++
T Consensus 461 s~~~~~~~a~~~~~~L~~~-----------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 461 SEKLDLKAAEALYERLKKA-----------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred cccchHHHHHHHHHHHHhh-----------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcE
Confidence 33444444332 25778999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecC
Q 000790 878 VIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYT 928 (1283)
Q Consensus 878 VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt 928 (1283)
||. ||+. ..+.+.+.||+|||||.| +|.||.++.
T Consensus 530 VIi--------~~~~---------r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 530 MVI--------EDAE---------RFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEE--------eCCC---------cCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 997 5531 235678999999999998 699999983
No 62
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=296.83 Aligned_cols=329 Identities=21% Similarity=0.231 Sum_probs=230.0
Q ss_pred chhhhhhHHHHHHHhcCCCHHHHHHHHHHHHhC-CeEEEEccCCCChHHHHHHHHHHhccc-------------CCC--E
Q 000790 569 VSDFAKSKTLAEQRQYLPIFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYT-------------TNG--I 632 (1283)
Q Consensus 569 ~~~~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~-qvvII~gpTGSGKTtqi~q~Lle~~~~-------------~~~--~ 632 (1283)
..........+.+-.+.-..++|...|+++..+ .+|+..|+||||||++|-++|++.... .+. .
T Consensus 186 l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~ 265 (731)
T KOG0347|consen 186 LFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPI 265 (731)
T ss_pred CCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcce
Confidence 333344556667777778889999999988877 899999999999999999999883221 122 4
Q ss_pred EEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeee------eccCCCceEEEechhHHHHHHccCC----CCCCCceE
Q 000790 633 VGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFE------DVTGPSTLIKYMTDGVLLRETLKDS----DLDKYRVI 702 (1283)
Q Consensus 633 Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e------~~~s~~t~I~~~T~G~LLr~ll~d~----~L~~~s~I 702 (1283)
.+|+.|||+||.||.+.+... ....+..|-..+.+- ...+....|+++|||.|+..+..+. .+.++.|+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai-~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcL 344 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAI-AEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCL 344 (731)
T ss_pred eEEecChHHHHHHHHHHHHHh-ccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEE
Confidence 789999999999999888443 222332222111111 1224478899999999998876553 37889999
Q ss_pred EEcCCCcCCcchhH---HHHHHHHHH--HhcCCceEEEeccCcCHHHHHHHhC-----------CCCe---EeecC-ccc
Q 000790 703 VMDEAHERSLSTDV---LFGILKKVV--ARRRDFKLIVTSATLNAQKFSDFFG-----------SVPI---FHIPG-RTF 762 (1283)
Q Consensus 703 IIDEaHERsl~tD~---ll~lLk~il--~~r~dlklIlmSATld~e~fa~~f~-----------~~pv---i~i~g-r~~ 762 (1283)
||||++ |++.-.. |-.+|+.+. ..++..|.+++|||++...+...-. +.++ +.-.| +.-
T Consensus 345 VlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k 423 (731)
T KOG0347|consen 345 VLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK 423 (731)
T ss_pred EEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCC
Confidence 999999 8776543 444555554 2345689999999995433221110 0000 00000 111
Q ss_pred ceeeeecCCChhhHHHHHHHHHH-----------HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCe
Q 000790 763 PVNTLYSKTPCEDYVEAAVKQAM-----------TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPEL 831 (1283)
Q Consensus 763 pV~i~y~~~~~~dyv~~~v~~~l-----------~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l 831 (1283)
| .+.- -.+...-........+ ...+..-+|.+|||||+...|..++-.|.. .++
T Consensus 424 p-kiiD-~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~-------------L~i 488 (731)
T KOG0347|consen 424 P-KIID-LTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN-------------LDI 488 (731)
T ss_pred C-eeEe-cCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh-------------cCC
Confidence 1 1110 1111111111111111 011234589999999999999998887754 267
Q ss_pred EEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHH
Q 000790 832 LILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQR 911 (1283)
Q Consensus 832 ~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QR 911 (1283)
..++||+.|.+.+|.+-++.|....--|||||++|++|||||+|.+||+ |. .|.+...|+||
T Consensus 489 ~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------Yq----------VPrtseiYVHR 550 (731)
T KOG0347|consen 489 PPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQ----------VPRTSEIYVHR 550 (731)
T ss_pred CCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------ee----------cCCccceeEec
Confidence 7889999999999999999999999999999999999999999999999 76 79999999999
Q ss_pred hcccCCCCC-CEEEEecChhhh
Q 000790 912 AGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 912 aGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
.||+.|++. |....|+.+...
T Consensus 551 SGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 551 SGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred ccccccccCCCeEEEEeChHHh
Confidence 999999995 999999887653
No 63
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=9.2e-30 Score=282.87 Aligned_cols=321 Identities=20% Similarity=0.218 Sum_probs=235.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHH----Hhc----c--cCCCEEEEecchHHHHHHH
Q 000790 577 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLL----EDG----Y--TTNGIVGCTQPRRVAAMSV 646 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Ll----e~~----~--~~~~~Il~tqPrR~LA~qv 646 (1283)
..++.....-..++|-+-|+.++.++++|.+|-||||||+.|.++++ +.- + ..++.-++++|.|+||.|.
T Consensus 183 ~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt 262 (610)
T KOG0341|consen 183 RGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQT 262 (610)
T ss_pred HHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHH
Confidence 33444555666789999999999999999999999999998655443 321 1 2345667778999999999
Q ss_pred HHHHHHHhccccC----------Ceee-EEEeee-eccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcc
Q 000790 647 AKRVSEEMDTELG----------DKVG-YAIRFE-DVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLS 713 (1283)
Q Consensus 647 akrVa~e~~~~lG----------~~VG-y~ir~e-~~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~ 713 (1283)
..-+.+.+. .++ ..+| ..++.. +....+.+|+++|||.|..++... -.|.-+.++.+|||+ |.++
T Consensus 263 ~~iie~~~~-~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiD 340 (610)
T KOG0341|consen 263 HDIIEQYVA-ALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMID 340 (610)
T ss_pred HHHHHHHHH-HHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhh
Confidence 887744332 111 1111 111111 123467899999999999988654 347788999999999 9999
Q ss_pred hhHHHHHHHHHHHhcCCceEEEeccCcC--HHHHHHHhCCCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHH-hhc
Q 000790 714 TDVLFGILKKVVARRRDFKLIVTSATLN--AQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTI-HIT 790 (1283)
Q Consensus 714 tD~ll~lLk~il~~r~dlklIlmSATld--~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i-~~~ 790 (1283)
+.|--.+-..+.......+.+++||||. ...|+.--.-.|+..--||.-....... ....|+....+.+..+ ++.
T Consensus 341 mGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldVi--QevEyVkqEaKiVylLeCLQ 418 (610)
T KOG0341|consen 341 MGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVI--QEVEYVKQEAKIVYLLECLQ 418 (610)
T ss_pred ccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHH--HHHHHHHhhhhhhhHHHHhc
Confidence 8876554333333445678999999994 4555554444565544454322211111 1224555444433332 345
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccC
Q 000790 791 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSL 870 (1283)
Q Consensus 791 ~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGI 870 (1283)
....++|||+..+.+++.+.++|-- .++.++.+||+-.+++|...++.|+.|+-.|||||++|..|+
T Consensus 419 KT~PpVLIFaEkK~DVD~IhEYLLl-------------KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGL 485 (610)
T KOG0341|consen 419 KTSPPVLIFAEKKADVDDIHEYLLL-------------KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGL 485 (610)
T ss_pred cCCCceEEEeccccChHHHHHHHHH-------------ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccC
Confidence 5577899999999999999888742 378899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 871 TVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 871 dIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
|+|+|.+||| || .|...++|+||+||+||.|. |.+.+|+.+..-
T Consensus 486 DFp~iqHVIN--------yD----------MP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 486 DFPDIQHVIN--------YD----------MPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred CCccchhhcc--------CC----------ChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 9999999999 88 89999999999999999995 999999887653
No 64
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=277.61 Aligned_cols=313 Identities=21% Similarity=0.237 Sum_probs=229.6
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--------CCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
..--..-+|..+|+.+++|++++..|.||||||.+++++|++..+. .+...++++|||+||.|+++.+.+..
T Consensus 38 G~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 38 GWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred CcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 3344567999999999999999999999999999999999886543 23467889999999999998885543
Q ss_pred ccccCCe---eeEEEeeee-----ccCCCceEEEechhHHHHHHccCC--CCCCCceEEEcCCCcCCcchhHHHHHHHHH
Q 000790 655 DTELGDK---VGYAIRFED-----VTGPSTLIKYMTDGVLLRETLKDS--DLDKYRVIVMDEAHERSLSTDVLFGILKKV 724 (1283)
Q Consensus 655 ~~~lG~~---VGy~ir~e~-----~~s~~t~I~~~T~G~LLr~ll~d~--~L~~~s~IIIDEaHERsl~tD~ll~lLk~i 724 (1283)
. .++.. +.......+ .......|++.||+.|++++.... .+..++++|||||+. .+...+--.+-+..
T Consensus 118 ~-~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADL-llsfGYeedlk~l~ 195 (569)
T KOG0346|consen 118 E-YCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADL-LLSFGYEEDLKKLR 195 (569)
T ss_pred H-HHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhh-hhhcccHHHHHHHH
Confidence 2 11111 100100111 113467899999999999988776 488999999999993 33333333333333
Q ss_pred HHhcCCceEEEeccCc--CHHHHHHHhCCCCeE-eecCcccc----eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEE
Q 000790 725 VARRRDFKLIVTSATL--NAQKFSDFFGSVPIF-HIPGRTFP----VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 797 (1283)
Q Consensus 725 l~~r~dlklIlmSATl--d~e~fa~~f~~~pvi-~i~gr~~p----V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~IL 797 (1283)
....+..|.++||||+ |+..+...|...|++ .+.....| +..++......|-+.-.+ .++. +.--.|++|
T Consensus 196 ~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfllly-allK--L~LI~gKsl 272 (569)
T KOG0346|consen 196 SHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLY-ALLK--LRLIRGKSL 272 (569)
T ss_pred HhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHH-HHHH--HHHhcCceE
Confidence 3456678999999999 788999999888864 33333333 333443333222221111 1111 122369999
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCc------------
Q 000790 798 IFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNI------------ 865 (1283)
Q Consensus 798 VFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnI------------ 865 (1283)
||+|+...+..+.-.|... ++..+.|.|.||...|..|++.|..|...|||||+.
T Consensus 273 iFVNtIdr~YrLkLfLeqF-------------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346|consen 273 IFVNTIDRCYRLKLFLEQF-------------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred EEEechhhhHHHHHHHHHh-------------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccc
Confidence 9999998887776655432 777888999999999999999999999999999992
Q ss_pred -----------------------ccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CC
Q 000790 866 -----------------------AETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PG 921 (1283)
Q Consensus 866 -----------------------AEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G 921 (1283)
+.+|||+..|..||| || .|.+..+|+||+||++|.+ +|
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD----------~P~t~~sYIHRvGRTaRg~n~G 401 (569)
T KOG0346|consen 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FD----------FPETVTSYIHRVGRTARGNNKG 401 (569)
T ss_pred ccccccCCCCccccccccCchhchhccccchheeeeee--------cC----------CCCchHHHHHhccccccCCCCC
Confidence 358999999999999 88 8999999999999999999 59
Q ss_pred EEEEecChhh
Q 000790 922 TCYRLYTESA 931 (1283)
Q Consensus 922 ~cyrLyt~~~ 931 (1283)
.+..|..+..
T Consensus 402 talSfv~P~e 411 (569)
T KOG0346|consen 402 TALSFVSPKE 411 (569)
T ss_pred ceEEEecchH
Confidence 9999887654
No 65
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.4e-27 Score=285.69 Aligned_cols=301 Identities=17% Similarity=0.176 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEee
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF 668 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~ 668 (1283)
+-|.++|+.+.+++++|++.|||+|||+++.++.+-. .|.+||+.|..+|.......+. .. |..+.+.-..
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----~G~TLVVSPLiSLM~DQV~~l~-~~----Gi~A~~lnS~ 90 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----EGLTLVVSPLISLMKDQVDQLE-AA----GIRAAYLNST 90 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----CCCEEEECchHHHHHHHHHHHH-Hc----Cceeehhhcc
Confidence 5688999999999999999999999999876654432 4578999999999887777663 23 3222221111
Q ss_pred ee----------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcch-hHHH--HHHHHHHHhcCCceEE
Q 000790 669 ED----------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLST-DVLF--GILKKVVARRRDFKLI 734 (1283)
Q Consensus 669 e~----------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~t-D~ll--~lLk~il~~r~dlklI 734 (1283)
-+ ......+|+|.+|++|......+ -.-..+++|+|||||+-+-+. ||-. ..|..+....+++.++
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEE
Confidence 00 12235789999999876532211 114568999999999855554 4433 3455666677899999
Q ss_pred EeccCcCHHH---HHHHhC-CCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHH
Q 000790 735 VTSATLNAQK---FSDFFG-SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAAC 810 (1283)
Q Consensus 735 lmSATld~e~---fa~~f~-~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~ 810 (1283)
.+|||.+... +...++ +.+.+.+.+..-| .++|...+..+..... .-+.. ......+..||||.|+..++.++
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q~-~fi~~-~~~~~~~~GIIYc~sRk~~E~ia 247 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQL-AFLAT-VLPQLSKSGIIYCLTRKKVEELA 247 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHHH-HHHHh-hccccCCCeEEEEeeHHhHHHHH
Confidence 9999997543 333333 3333333322221 2222221111111111 11111 22445677899999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceecc
Q 000790 811 FALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYN 890 (1283)
Q Consensus 811 ~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD 890 (1283)
..|.. .++.+.+||++|..++|..+.+.|..+..+|||||+.+.+|||.|||++||+ ||
T Consensus 248 ~~L~~-------------~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~ 306 (590)
T COG0514 248 EWLRK-------------NGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD 306 (590)
T ss_pred HHHHH-------------CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec
Confidence 99975 2789999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 891 PKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 891 ~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
.|.|.++|.|-+|||||.| |..|+.||++.+.
T Consensus 307 ----------lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 307 ----------LPGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred ----------CCCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 7999999999999999999 7999999998775
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.5e-26 Score=267.86 Aligned_cols=312 Identities=19% Similarity=0.192 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEe
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIR 667 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir 667 (1283)
..||..+......+ +++|+.|||-|||+++...+.......+++++++.||+-|+.|.+..+.+.++..-+..+..+-.
T Consensus 17 R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGe 95 (542)
T COG1111 17 RLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGE 95 (542)
T ss_pred HHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCC
Confidence 36888887777665 89999999999999988877765554556899999999999999999999888765554432211
Q ss_pred eee----ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc--
Q 000790 668 FED----VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL-- 740 (1283)
Q Consensus 668 ~e~----~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl-- 740 (1283)
... ..-...+|+|+||.++.+-+... .++.+++|||+|||| |....-....+.+..+....++.+++||||+
T Consensus 96 v~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs 174 (542)
T COG1111 96 VRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS 174 (542)
T ss_pred CChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecCCCC
Confidence 110 01236789999999999887654 569999999999999 7777666667777788888899999999999
Q ss_pred CHHHHHHHhCCCCeEeecCcc----------cceeeeecCCC------------------------------------hh
Q 000790 741 NAQKFSDFFGSVPIFHIPGRT----------FPVNTLYSKTP------------------------------------CE 774 (1283)
Q Consensus 741 d~e~fa~~f~~~pvi~i~gr~----------~pV~i~y~~~~------------------------------------~~ 774 (1283)
+.+.+.+...+-.+-.|.-++ ..+++.+.+.. ..
T Consensus 175 ~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~k 254 (542)
T COG1111 175 DLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKK 254 (542)
T ss_pred CHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHh
Confidence 788887766553332222111 01111111000 00
Q ss_pred -------------------------------------------------hHHHH------------------------HH
Q 000790 775 -------------------------------------------------DYVEA------------------------AV 781 (1283)
Q Consensus 775 -------------------------------------------------dyv~~------------------------~v 781 (1283)
.|+.. ++
T Consensus 255 dl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al 334 (542)
T COG1111 255 DLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRAL 334 (542)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHH
Confidence 00000 00
Q ss_pred HHH-------------------HHHhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEe-----
Q 000790 782 KQA-------------------MTIHI-TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPI----- 836 (1283)
Q Consensus 782 ~~~-------------------l~i~~-~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~L----- 836 (1283)
... +.-++ ..+...||||..-+..++.+...|.+.. +...+.++
T Consensus 335 ~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~-----------~~~~~rFiGQa~r 403 (542)
T COG1111 335 RLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG-----------IKARVRFIGQASR 403 (542)
T ss_pred HHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC-----------CcceeEEeecccc
Confidence 000 00011 1234589999999999998888886531 12222222
Q ss_pred --cCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcc
Q 000790 837 --YSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGR 914 (1283)
Q Consensus 837 --Hs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGR 914 (1283)
..||++.+|..+++.|+.|..+|||||+|+|.|||||++++||- |+| -.|..-++||.||
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEp----------vpSeIR~IQR~GR 465 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEP----------VPSEIRSIQRKGR 465 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecC----------CcHHHHHHHhhCc
Confidence 36799999999999999999999999999999999999999995 884 4577889999999
Q ss_pred cCCCCCCEEEEecChh
Q 000790 915 AGRTGPGTCYRLYTES 930 (1283)
Q Consensus 915 AGR~g~G~cyrLyt~~ 930 (1283)
+||..+|..|.|.++.
T Consensus 466 TGR~r~Grv~vLvt~g 481 (542)
T COG1111 466 TGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccCCCCeEEEEEecC
Confidence 9999999999999876
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.5e-26 Score=271.35 Aligned_cols=284 Identities=17% Similarity=0.169 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhCC--eEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc---cCCeeeE
Q 000790 590 VRDELLQVIRENQ--VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE---LGDKVGY 664 (1283)
Q Consensus 590 ~Q~eil~~I~~~q--vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~---lG~~VGy 664 (1283)
+|.++++++.++. +++|++|||||||+++.++++.. ..+++++.|+++|+.++++++...+..- .+..++-
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 5889999998876 58899999999999998887753 3467889999999999999987765311 1111111
Q ss_pred EEeee---e------------------------ccCCCceEEEechhHHHHHHc---cCC------CCCCCceEEEcCCC
Q 000790 665 AIRFE---D------------------------VTGPSTLIKYMTDGVLLRETL---KDS------DLDKYRVIVMDEAH 708 (1283)
Q Consensus 665 ~ir~e---~------------------------~~s~~t~I~~~T~G~LLr~ll---~d~------~L~~~s~IIIDEaH 708 (1283)
+.++ + .......|+++||++|...+. ..+ .+.++++|||||+|
T Consensus 77 -~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 77 -VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred -ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 0000 0 001134556666776654322 122 26889999999999
Q ss_pred cCCcchh-HH---HHHHHHHHHhcCCceEEEeccCcCHHH---HHHH-hCCCCeEeecCcc--c----------------
Q 000790 709 ERSLSTD-VL---FGILKKVVARRRDFKLIVTSATLNAQK---FSDF-FGSVPIFHIPGRT--F---------------- 762 (1283)
Q Consensus 709 ERsl~tD-~l---l~lLk~il~~r~dlklIlmSATld~e~---fa~~-f~~~pvi~i~gr~--~---------------- 762 (1283)
..+.... .+ +.++..+.......++|+||||++... +.+. +.+.++..+.|.. +
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 8664332 22 233333322333579999999997542 2232 1245777777771 1
Q ss_pred ----ceeeeecCCC--hhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEe
Q 000790 763 ----PVNTLYSKTP--CEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPI 836 (1283)
Q Consensus 763 ----pV~i~y~~~~--~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~L 836 (1283)
++...+.... ....+...+..+........++++||||+++..++.++..|.+. ..++.+..+
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-----------~~~~~~~~l 304 (357)
T TIGR03158 236 PVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-----------GLGDDIGRI 304 (357)
T ss_pred eeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----------CCCceEEee
Confidence 2333333311 11222222232323222235678999999999999999988652 124568889
Q ss_pred cCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccC
Q 000790 837 YSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAG 916 (1283)
Q Consensus 837 Hs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAG 916 (1283)
||.+++.+|.++. ...|||||+++++||||+.+ +|| | .|.+.++|+||+||+|
T Consensus 305 ~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi---------~-----------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI---------F-----------SARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE---------E-----------CCCCHHHHhhhcccCC
Confidence 9999999987653 67899999999999999987 555 2 2678899999999998
No 68
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=281.16 Aligned_cols=309 Identities=17% Similarity=0.212 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-------CCEEEEecchHHHHHHHHHHHHHHhc-ccc-
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-------NGIVGCTQPRRVAAMSVAKRVSEEMD-TEL- 658 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-------~~~Il~tqPrR~LA~qvakrVa~e~~-~~l- 658 (1283)
.++|.++++.+..+++++.|+|||||||+++.++++..+... +-.++|+.|+|+||.|++..+.+.-- ...
T Consensus 160 t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~ 239 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS 239 (593)
T ss_pred CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc
Confidence 367889999999999999999999999999999888765432 24788999999999999998855331 111
Q ss_pred CCeeeEEEe------eeeccCCCceEEEechhHHHHHHccCC---CCCCCceEEEcCCCcCCcchhHHHHHHHHHHH--h
Q 000790 659 GDKVGYAIR------FEDVTGPSTLIKYMTDGVLLRETLKDS---DLDKYRVIVMDEAHERSLSTDVLFGILKKVVA--R 727 (1283)
Q Consensus 659 G~~VGy~ir------~e~~~s~~t~I~~~T~G~LLr~ll~d~---~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~--~ 727 (1283)
....+.... ..........|++.||-.+...+...+ .|..+.++|+||++ +.+.-.++...+..++. .
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 111111111 001122356788999999888877654 68999999999999 55555455555555543 3
Q ss_pred cCCceEEEeccCc--CHHHHHHHhCCCCeEeecCcccc------eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEE
Q 000790 728 RRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFP------VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 799 (1283)
Q Consensus 728 r~dlklIlmSATl--d~e~fa~~f~~~pvi~i~gr~~p------V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVF 799 (1283)
.+++++=++|||+ .++.++......++..+-|..-. .+..|..... ..+..+.++....-..++|||
T Consensus 319 s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~-----~K~lA~rq~v~~g~~PP~lIf 393 (593)
T KOG0344|consen 319 SPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK-----GKLLALRQLVASGFKPPVLIF 393 (593)
T ss_pred CcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch-----hHHHHHHHHHhccCCCCeEEE
Confidence 5789999999999 56777776655554444333211 1111111111 112222223223346789999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEE
Q 000790 800 MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI 879 (1283)
Q Consensus 800 l~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VI 879 (1283)
+.+.+.+..+...|. ..+++.|..+||..++.++..+++.|+.|++.|||||+++++|||+.||+.||
T Consensus 394 VQs~eRak~L~~~L~------------~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 394 VQSKERAKQLFEELE------------IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred EecHHHHHHHHHHhh------------hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 999988888877774 12588899999999999999999999999999999999999999999999999
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhhh
Q 000790 880 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 932 (1283)
Q Consensus 880 DsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 932 (1283)
| || .|-+..+|+||+||+||.|+ |.+|.+||.++.
T Consensus 462 n--------yD----------~p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 462 N--------YD----------FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred e--------cC----------CCchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 9 99 89999999999999999996 999999998664
No 69
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=6.5e-27 Score=272.99 Aligned_cols=316 Identities=16% Similarity=0.196 Sum_probs=240.0
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
.--..++|..+|+++..+-++||.+..|+|||++|....++..-.. ...++|+.|||++|+||...|......--|..
T Consensus 45 f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 45 FALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred ccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 3344589999999999999999999999999998776666654332 34688889999999999988865444334555
Q ss_pred eeEEEeeeec-----cCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEE
Q 000790 662 VGYAIRFEDV-----TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLI 734 (1283)
Q Consensus 662 VGy~ir~e~~-----~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklI 734 (1283)
+..-|.+... .-..++|++.|||.++...-.+ .+.+++.++|||||+ ..+++..+-.-+..|+. .....+++
T Consensus 125 csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~ 203 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVA 203 (980)
T ss_pred eEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheee
Confidence 5444444432 2357899999999999876544 458999999999999 67777666666666654 44567999
Q ss_pred EeccCcC---HHHHHHHhCCCCeEeecCcc---cceeeeecCCC----hhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 000790 735 VTSATLN---AQKFSDFFGSVPIFHIPGRT---FPVNTLYSKTP----CEDYVEAAVKQAMTIHITSPPGDILIFMTGQD 804 (1283)
Q Consensus 735 lmSATld---~e~fa~~f~~~pvi~i~gr~---~pV~i~y~~~~----~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~ 804 (1283)
++|||-+ .+.+++|+.+.-++....+. +-+..++...+ ....+...+..+-.+...-+-.+.||||+.+.
T Consensus 204 a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~s 283 (980)
T KOG4284|consen 204 AFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQIS 283 (980)
T ss_pred EEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhh
Confidence 9999994 45677777655455444332 22333332211 11223333444444444556778999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCc
Q 000790 805 EIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYG 884 (1283)
Q Consensus 805 eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~ 884 (1283)
.++.++..|.. .++.+-++.|.|.+.+|..+++.++.-..+|||+|+..++|||-+.|++|||
T Consensus 284 ra~~~a~~L~s-------------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN---- 346 (980)
T KOG4284|consen 284 RAEPIATHLKS-------------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN---- 346 (980)
T ss_pred hhhHHHHHhhc-------------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----
Confidence 99998888854 4889999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhh
Q 000790 885 KMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 885 K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 931 (1283)
.| .|.+-..|.||+|||||.|. |.+++|+....
T Consensus 347 ----iD----------~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 347 ----ID----------APADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred ----cC----------CCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 66 79999999999999999995 99999986543
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=6.2e-26 Score=288.64 Aligned_cols=328 Identities=23% Similarity=0.265 Sum_probs=235.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-CEEEEecchHHHHHHHHHHHHHHh
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
..-+..+....+|.+|.+++..+.++++|||+.+||||||.+|.++|+++.+... .+.+++.|+++||..+++++.+..
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 4445566667799999999999999999999999999999999999999877643 478999999999999999996544
Q ss_pred ccccCCeeeEEEeeee--------ccCCCceEEEechhHHHHHHccCC-----CCCCCceEEEcCCCc-CCcchhHHHHH
Q 000790 655 DTELGDKVGYAIRFED--------VTGPSTLIKYMTDGVLLRETLKDS-----DLDKYRVIVMDEAHE-RSLSTDVLFGI 720 (1283)
Q Consensus 655 ~~~lG~~VGy~ir~e~--------~~s~~t~I~~~T~G~LLr~ll~d~-----~L~~~s~IIIDEaHE-Rsl~tD~ll~l 720 (1283)
..+|..|+..+-..+ ......+|+++++.||-..++... .+.++.+|||||+|- |+...--+..+
T Consensus 140 -~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 140 -SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred -HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 445544443332111 123567899999999987666542 278899999999996 66665555555
Q ss_pred HHHHHHh----cCCceEEEeccCc-CHHHHHHHhCCCCeEe-ecCccccee--eeecCCChhh--------HHHHHHHHH
Q 000790 721 LKKVVAR----RRDFKLIVTSATL-NAQKFSDFFGSVPIFH-IPGRTFPVN--TLYSKTPCED--------YVEAAVKQA 784 (1283)
Q Consensus 721 Lk~il~~----r~dlklIlmSATl-d~e~fa~~f~~~pvi~-i~gr~~pV~--i~y~~~~~~d--------yv~~~v~~~ 784 (1283)
++.+... ..++++|++|||+ |...|+.-+.+..... +.+...|-. .+....+..- -.......+
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~ 298 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATL 298 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHH
Confidence 5555543 3379999999999 6666655444443333 444443322 2222222000 000111111
Q ss_pred HHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecC
Q 000790 785 MTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN 864 (1283)
Q Consensus 785 l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATn 864 (1283)
... .....-++|||+.++..++.+.......+... .......+..++++|+.++|.+|...|+.|...++++||
T Consensus 299 ~~~-~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~-----~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~ 372 (851)
T COG1205 299 AAL-LVRNGIQTLVFFRSRKQVELLYLSPRRRLVRE-----GGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN 372 (851)
T ss_pred HHH-HHHcCceEEEEEehhhhhhhhhhchhHHHhhc-----chhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch
Confidence 111 12236689999999999998875555443322 011235688999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEEEcCCccceeccCCCCccccccccc-CHHHHHHHhcccCCCC-CCEEEEecC
Q 000790 865 IAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPV-SRAAADQRAGRAGRTG-PGTCYRLYT 928 (1283)
Q Consensus 865 IAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~Pi-S~as~~QRaGRAGR~g-~G~cyrLyt 928 (1283)
.+|.||||-++..||.+|+ |. +..++.||+|||||.+ .+..+.++.
T Consensus 373 AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 373 ALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999885 66 8999999999999998 454444443
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=272.72 Aligned_cols=314 Identities=21% Similarity=0.259 Sum_probs=212.5
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc-cCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
..+++..||.+++...+ ++++||++|||+|||.++...++++.- ...++|++++|++-|+.|....+ ..++....
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~~~-- 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACF-SIYLIPYS-- 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHH-hhccCccc--
Confidence 45788999999999988 999999999999999998887777632 23579999999999999988554 44442211
Q ss_pred eeEEEeeee--cc------CCCceEEEechhHHHHHHccC--CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC-
Q 000790 662 VGYAIRFED--VT------GPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD- 730 (1283)
Q Consensus 662 VGy~ir~e~--~~------s~~t~I~~~T~G~LLr~ll~d--~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d- 730 (1283)
+ .+...+ .. -...+|.|+||.+|...|... ..|+.+++||||||| |+...-..-.+++.++.....
T Consensus 135 ~--T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 135 V--TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred c--eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcc
Confidence 1 111111 11 136789999999999887643 227889999999999 655554555555555544333
Q ss_pred ceEEEeccCc--CHHHHHHHhCCCCeEeec----------------Ccccceeee-------------------------
Q 000790 731 FKLIVTSATL--NAQKFSDFFGSVPIFHIP----------------GRTFPVNTL------------------------- 767 (1283)
Q Consensus 731 lklIlmSATl--d~e~fa~~f~~~pvi~i~----------------gr~~pV~i~------------------------- 767 (1283)
.|||++|||+ +.+.+.++..+--+- +. -..+|+++.
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 3999999999 666666555431000 00 000111100
Q ss_pred ----------ecC------------CChh-----------h------------------HHH------------------
Q 000790 768 ----------YSK------------TPCE-----------D------------------YVE------------------ 778 (1283)
Q Consensus 768 ----------y~~------------~~~~-----------d------------------yv~------------------ 778 (1283)
|.. .+.. . ++.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 000 0000 0 000
Q ss_pred ----------------------------HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 000790 779 ----------------------------AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPE 830 (1283)
Q Consensus 779 ----------------------------~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~ 830 (1283)
.....+.......+...+|||+.+++.+..+...|..... + .-.+.
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~-~-----~ir~~ 444 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE-L-----GIKAE 444 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh-c-----ccccc
Confidence 0000001111123456799999999999999888875211 1 01122
Q ss_pred eEEEEec----CCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 000790 831 LLILPIY----SQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 906 (1283)
Q Consensus 831 l~Il~LH----s~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~a 906 (1283)
+.|..-+ .+|++.+|..+++.|+.|..+|||||+|+|.||||+.++.||- || .-.+..
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd----------~~snpI 506 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YD----------YSSNPI 506 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ec----------CCccHH
Confidence 2222222 5899999999999999999999999999999999999999996 77 456677
Q ss_pred HHHHHhcccCCCCCCEEEEecCh
Q 000790 907 AADQRAGRAGRTGPGTCYRLYTE 929 (1283)
Q Consensus 907 s~~QRaGRAGR~g~G~cyrLyt~ 929 (1283)
..+||.|| ||...|+|+.|++.
T Consensus 507 rmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 507 RMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred HHHHHhcc-ccccCCeEEEEEcc
Confidence 99999999 99999999999994
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=2.4e-25 Score=285.60 Aligned_cols=313 Identities=18% Similarity=0.212 Sum_probs=213.1
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
+....||.+++..+..+ ++||++|||+|||.++...+.......+++++|++|++.|+.|.++.+...++.. +..++.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~ 91 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVV 91 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEE
Confidence 45678999998888776 8999999999999988777766554456799999999999999999987766532 122221
Q ss_pred EEeeeec------cCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 665 AIRFEDV------TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 665 ~ir~e~~------~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
+.++.. .-....|+++|++++...++.. ..+.++++||||||| +.........+++......+...+++||
T Consensus 92 -~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 92 -FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred -EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 1125689999999998877654 347889999999999 4443322233444444555667899999
Q ss_pred cCc--CHHHHHHHhCCCC--eEeecCcc--------cceeeeecC----------------------------------C
Q 000790 738 ATL--NAQKFSDFFGSVP--IFHIPGRT--------FPVNTLYSK----------------------------------T 771 (1283)
Q Consensus 738 ATl--d~e~fa~~f~~~p--vi~i~gr~--------~pV~i~y~~----------------------------------~ 771 (1283)
||+ +.+.+...+.+.- .+.+.... .+..+.+.. .
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 999 4444433332210 01110000 000000000 0
Q ss_pred ---Chh-------------------------------------------------hHHHH--------------------
Q 000790 772 ---PCE-------------------------------------------------DYVEA-------------------- 779 (1283)
Q Consensus 772 ---~~~-------------------------------------------------dyv~~-------------------- 779 (1283)
... .|+..
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 000 00000
Q ss_pred ---------------------HHHHHHHHh-hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEec
Q 000790 780 ---------------------AVKQAMTIH-ITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIY 837 (1283)
Q Consensus 780 ---------------------~v~~~l~i~-~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LH 837 (1283)
.+..++.-. ...+.+++||||.++..++.++..|.. .++.+..+|
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~-------------~~~~~~~~~ 396 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK-------------EGIKAVRFV 396 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh-------------CCCceEEEE
Confidence 000000000 014578999999999999999888843 245566677
Q ss_pred CC--------CCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHH
Q 000790 838 SQ--------LPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAAD 909 (1283)
Q Consensus 838 s~--------L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~ 909 (1283)
|. |++.+|..+++.|+.|..+|||||+++++|+|+|++++||+ || .|.+...|+
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd----------~~~s~~r~i 458 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YE----------PVPSEIRSI 458 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHH
Confidence 65 99999999999999999999999999999999999999998 88 477888999
Q ss_pred HHhcccCCCCCCEEEEecChhhh
Q 000790 910 QRAGRAGRTGPGTCYRLYTESAY 932 (1283)
Q Consensus 910 QRaGRAGR~g~G~cyrLyt~~~~ 932 (1283)
||+||+||.++|.+|.|+++...
T Consensus 459 QR~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 459 QRKGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred HHhcccCcCCCCEEEEEEeCCCh
Confidence 99999999999999999986543
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=3.3e-25 Score=270.87 Aligned_cols=297 Identities=13% Similarity=0.089 Sum_probs=197.7
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeee
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VG 663 (1283)
.+.++++|.+++..+..++..|+++|||+|||..+...+........++++|++|+++|+.|+.+++.+..... ...++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccc-cccee
Confidence 35688999999999999999999999999999976543221111223489999999999999999996533222 11121
Q ss_pred EEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCH-
Q 000790 664 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNA- 742 (1283)
Q Consensus 664 y~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~- 742 (1283)
....+ ........|+++|++.|.+.. ...+.++++|||||||. ..... +..+++.+ .+..++++||||+.-
T Consensus 191 ~i~~g-~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~~~-~~~il~~~---~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 191 KIYSG-TAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTGKS-LTSIITKL---DNCKFKFGLTGSLRDG 262 (501)
T ss_pred EEecC-cccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccchh-HHHHHHhh---hccceEEEEeccCCCc
Confidence 11111 122245789999999987643 23578999999999994 33322 22333322 234578999999931
Q ss_pred H----HHHHHhCCCCeEeec-------Ccccceeee--ecCCCh--------hhHHH------------HHHHHHHHHhh
Q 000790 743 Q----KFSDFFGSVPIFHIP-------GRTFPVNTL--YSKTPC--------EDYVE------------AAVKQAMTIHI 789 (1283)
Q Consensus 743 e----~fa~~f~~~pvi~i~-------gr~~pV~i~--y~~~~~--------~dyv~------------~~v~~~l~i~~ 789 (1283)
. .+..+||... ..+. |...++.+. +...+. .+|-. ..+...... .
T Consensus 263 ~~~~~~~~~~fG~i~-~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~-~ 340 (501)
T PHA02558 263 KANILQYVGLFGDIF-KPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALK-L 340 (501)
T ss_pred cccHHHHHHhhCCce-EEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHH-H
Confidence 1 1344555321 1110 111121111 111000 01100 011111111 1
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEec-Ccccc
Q 000790 790 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVAT-NIAET 868 (1283)
Q Consensus 790 ~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVAT-nIAEt 868 (1283)
...++.+|||+...++++.+++.|.+. +..+..+||+++.++|..+++.|+.|...||||| +++++
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~-------------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKV-------------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHc-------------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 234678999999999999888888652 5679999999999999999999999999999998 89999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCE
Q 000790 869 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGT 922 (1283)
Q Consensus 869 GIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~ 922 (1283)
|||+|++++||. +. .+.|...|+||+||+||.++|+
T Consensus 408 G~Dip~ld~vIl--------~~----------p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 408 GISIKNLHHVIF--------AH----------PSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccccccEEEE--------ec----------CCcchhhhhhhhhccccCCCCC
Confidence 999999999995 33 4567889999999999999764
No 74
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=266.71 Aligned_cols=451 Identities=16% Similarity=0.177 Sum_probs=286.5
Q ss_pred CHHHHHHHHHHHH-hCCeEEEEccCCCChHHHHHHHHHHhcccC----------CCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 587 IFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTT----------NGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 587 i~~~Q~eil~~I~-~~qvvII~gpTGSGKTtqi~q~Lle~~~~~----------~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
+..+|..+..+.. ...++++|||||+|||-.+++-+++..-.. ..+|+++.|..+|+..+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 4467777776654 457999999999999999988888764321 23899999999999998887765443
Q ss_pred cccCCeeeEEEeeee---ccCCCceEEEechhHH---HHHHccCCCCCCCceEEEcCCCc----CCcchhHHH-HHHHHH
Q 000790 656 TELGDKVGYAIRFED---VTGPSTLIKYMTDGVL---LRETLKDSDLDKYRVIVMDEAHE----RSLSTDVLF-GILKKV 724 (1283)
Q Consensus 656 ~~lG~~VGy~ir~e~---~~s~~t~I~~~T~G~L---Lr~ll~d~~L~~~s~IIIDEaHE----Rsl~tD~ll-~lLk~i 724 (1283)
.+|..|+-..+-.. ..-..|.|+++||+-. .+.--.+...+-|+++||||+|. |+.-..-.. ..++..
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 45555553222211 1235799999999854 33222223356789999999994 333332222 222233
Q ss_pred HHhcCCceEEEeccCc-CHHHHHHHhCCCC--eEee--cCcccceeeeecCCChhhHHHH-------HHHHHHHHhhcCC
Q 000790 725 VARRRDFKLIVTSATL-NAQKFSDFFGSVP--IFHI--PGRTFPVNTLYSKTPCEDYVEA-------AVKQAMTIHITSP 792 (1283)
Q Consensus 725 l~~r~dlklIlmSATl-d~e~fa~~f~~~p--vi~i--~gr~~pV~i~y~~~~~~dyv~~-------~v~~~l~i~~~~~ 792 (1283)
.......++|++|||+ |.+.++.|+...+ +|.. .-|..|+...|......+-+.. ....++ .| ..
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm-~~--ag 545 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVL-EH--AG 545 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHH-Hh--CC
Confidence 2334579999999999 8888888887544 3333 4566677777765332222111 112222 12 23
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHH----------HH------h--------hccccCCCCCeEEEEecCCCCHHHHHHH
Q 000790 793 PGDILIFMTGQDEIEAACFALKERM----------EQ------L--------ISSTTREVPELLILPIYSQLPADLQAKI 848 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~l----------~~------l--------~~~~~~~~~~l~Il~LHs~L~~~er~~I 848 (1283)
.++||||+.++++.-+++..|+... ++ + .+...++..++.+..+|+||...+|..+
T Consensus 546 k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~ 625 (1674)
T KOG0951|consen 546 KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELV 625 (1674)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHH
Confidence 5899999999999999999887422 11 0 0111233456789999999999999999
Q ss_pred HhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-----CCEE
Q 000790 849 FEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-----PGTC 923 (1283)
Q Consensus 849 ~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-----~G~c 923 (1283)
.+.|..|.++|+|+|.++++|||+|+-+++| ....+|||..|.- .++|+.+.+||.|||||.+ .|+.
T Consensus 626 EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 626 EDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred HHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 9999999999999999999999999888888 3468999988854 6899999999999999987 3555
Q ss_pred EEecChhhhhhhcCCCC--cchhhccchhHHHHHHhhcccCcccC------C-----CCCCCCCh---------------
Q 000790 924 YRLYTESAYLNEMLPSP--VPEIQRTNLGNVVLLLKSLKIDNLLD------F-----DFMDPPPQ--------------- 975 (1283)
Q Consensus 924 yrLyt~~~~~~~m~~~~--~PEI~r~~L~~vvL~Lk~lgi~~l~~------f-----~fldpP~~--------------- 975 (1283)
+.=+++-.|.-.+.... +++-.-..|...+=.=+.+|+..+.. . ..+..|..
T Consensus 698 it~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~ 777 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQR 777 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHH
Confidence 55555555543333322 22322222222111112233221110 0 11111111
Q ss_pred --hhHHHHHHHHHHhccccc---CC--CCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhh
Q 000790 976 --ENILNSMYQLWVLGALNN---VG--ALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDR 1048 (1283)
Q Consensus 976 --~~i~~al~~L~~lgaLd~---~g--~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~ 1048 (1283)
+.+..|.-.|...|.|-- .| ..|.+|++.+.+.+.-.-....-....-.|.+. .++.+++...-|-.-..+
T Consensus 778 r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i--~lfrifs~seEfk~~svr 855 (1674)
T KOG0951|consen 778 RADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEI--DLFRIFSKSEEFKYVSVR 855 (1674)
T ss_pred HhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccc--hhhhhhhhccccccCCcc
Confidence 456678888888888742 23 578999999999886655544444433333332 344555555555433333
Q ss_pred HHH
Q 000790 1049 AEE 1051 (1283)
Q Consensus 1049 ~~~ 1051 (1283)
.++
T Consensus 856 ~~e 858 (1674)
T KOG0951|consen 856 EEE 858 (1674)
T ss_pred HHH
Confidence 333
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=5.9e-25 Score=287.23 Aligned_cols=298 Identities=17% Similarity=0.131 Sum_probs=193.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
+.+..-....+++|..+++.+..+++++++||||||||+.+.. ++......+.+++|++|||+||.|+++++. .++..
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~~l~~~g~~alIL~PTreLa~Qi~~~l~-~l~~~ 149 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSLYLAKKGKKSYIIFPTRLLVEQVVEKLE-KFGEK 149 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHHHHHhcCCeEEEEeccHHHHHHHHHHHH-HHhhh
Confidence 3444444578899999999999999999999999999975433 322222346789999999999999999995 45545
Q ss_pred cCCeeeEEEeeee------------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcc----hhHHHH--
Q 000790 658 LGDKVGYAIRFED------------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS----TDVLFG-- 719 (1283)
Q Consensus 658 lG~~VGy~ir~e~------------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~----tD~ll~-- 719 (1283)
.+..+........ .......|+++|+|.|.+.+. ...+.++++|||||||. .+. .|-++.
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~l 227 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLL 227 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHHHhC
Confidence 5544332222211 012457999999999998764 23356699999999994 332 111111
Q ss_pred -----HHHHHHHh-------------------------cCCceEEEeccCcCHHHHH-HHhCCCCeEeecCcc---ccee
Q 000790 720 -----ILKKVVAR-------------------------RRDFKLIVTSATLNAQKFS-DFFGSVPIFHIPGRT---FPVN 765 (1283)
Q Consensus 720 -----lLk~il~~-------------------------r~dlklIlmSATld~e~fa-~~f~~~pvi~i~gr~---~pV~ 765 (1283)
.+..++.. ..+.++|++|||++...+. .+|...-.+.+.... -.+.
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~ 307 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIV 307 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCce
Confidence 11111111 1157899999999653222 222221113332221 1234
Q ss_pred eeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH---HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCH
Q 000790 766 TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE---IEAACFALKERMEQLISSTTREVPELLILPIYSQLPA 842 (1283)
Q Consensus 766 i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~e---Ie~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~ 842 (1283)
..|.... +... .+..++.. .+..+||||++... ++.++..|.. .++.+..+||+|
T Consensus 308 ~~yi~~~--~k~~-~L~~ll~~----l~~~~LIFv~t~~~~~~ae~l~~~L~~-------------~gi~v~~~hg~l-- 365 (1176)
T PRK09401 308 DSYIVDE--DSVE-KLVELVKR----LGDGGLIFVPSDKGKEYAEELAEYLED-------------LGINAELAISGF-- 365 (1176)
T ss_pred EEEEEcc--cHHH-HHHHHHHh----cCCCEEEEEecccChHHHHHHHHHHHH-------------CCCcEEEEeCcH--
Confidence 4444322 1111 22222211 13579999998766 8888877764 278899999999
Q ss_pred HHHHHHHhHhcCCCeeEEEe----cCcccccCCCCC-eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccC
Q 000790 843 DLQAKIFEKAKEGTRKCIVA----TNIAETSLTVDG-IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAG 916 (1283)
Q Consensus 843 ~er~~I~~~f~~G~rKVLVA----TnIAEtGIdIp~-V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAG 916 (1283)
.+.++.|++|..+|||| |++|++|||||+ |+|||++|.-+.++ .--....+.||.||+-
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~------------~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF------------SLEEELAPPFLLLRLL 429 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE------------eccccccCHHHHHHHH
Confidence 23459999999999999 799999999999 89999977655432 0113356778888884
No 76
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.1e-25 Score=246.59 Aligned_cols=306 Identities=18% Similarity=0.267 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHhccccCCee---
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV--- 662 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V--- 662 (1283)
.++|+.+|..+..|.++++.+.+|+|||.++...++...-. ....++++.|+|+||+|+.+.+ ..++...+..|
T Consensus 50 SaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~v~~~ 128 (397)
T KOG0327|consen 50 SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVV-RALGDHMDVSVHAC 128 (397)
T ss_pred hHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHH-Hhhhcccceeeeee
Confidence 46777777777789999999999999999988877765321 1236888999999999999554 55554443332
Q ss_pred -eEEEee-ee--ccCCCceEEEechhHHHHHHccCCC-CCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 663 -GYAIRF-ED--VTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 663 -Gy~ir~-e~--~~s~~t~I~~~T~G~LLr~ll~d~~-L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
|..... ++ .......|++.|||..+..+-...+ ...+.++|+|||+| ++..+|.-.+-..+....++.|++++|
T Consensus 129 igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdqI~~if~~lp~~vQv~l~S 207 (397)
T KOG0327|consen 129 IGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQIYDIFQELPSDVQVVLLS 207 (397)
T ss_pred cCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHHHHHHHHHcCcchhheeec
Confidence 322222 11 1223468999999999988865543 55689999999996 455555555555555668899999999
Q ss_pred cCc--CHHHHHHHhCCCCeEeecCcc---c-ceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 738 ATL--NAQKFSDFFGSVPIFHIPGRT---F-PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 738 ATl--d~e~fa~~f~~~pvi~i~gr~---~-pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
||+ ++..+.+-|...|+...-.+. . -+..+|....... .+..+..++. .-.+.+|||+|+..+..+..
T Consensus 208 AT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~ 281 (397)
T KOG0327|consen 208 ATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTD 281 (397)
T ss_pred ccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHH
Confidence 999 566778888877764332211 1 1222332221111 3344444444 56779999999999999998
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
.|.. .++.+..+|+.|.+.+|..+...|+.|..+|||.|+.+++|+||-.+..||+ ||
T Consensus 282 ~L~~-------------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------yd- 339 (397)
T KOG0327|consen 282 KLRA-------------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD- 339 (397)
T ss_pred HHhh-------------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------ec-
Confidence 8843 3888999999999999999999999999999999999999999999999999 88
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
.|..+.+|+||+||+||.| +|....+.++.+.
T Consensus 340 ---------lP~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 340 ---------LPARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred ---------cccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 7999999999999999999 6999999998765
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.92 E-value=4.1e-23 Score=256.08 Aligned_cols=311 Identities=20% Similarity=0.204 Sum_probs=202.7
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 581 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 581 ~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
.++.|-+++++.+++..+.-++..|+.++||+|||+++.++++...+. +..++|+.|++.||.+.++.+.. +...+|.
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-g~~V~VVTpn~yLA~Rdae~m~~-l~~~LGL 140 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-GKGAMLVTTNDYLAKRDAEEMGP-VYEWLGL 140 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-CCceEEeCCCHHHHHHHHHHHHH-HHhhcCC
Confidence 356777888888888888877778999999999999998887766654 44688999999999999988744 4445777
Q ss_pred eeeEEEeeee---------ccCCCceEEEechhHHH-HHH---c-c---CCCCCCCceEEEcCCCc------CCc-----
Q 000790 661 KVGYAIRFED---------VTGPSTLIKYMTDGVLL-RET---L-K---DSDLDKYRVIVMDEAHE------RSL----- 712 (1283)
Q Consensus 661 ~VGy~ir~e~---------~~s~~t~I~~~T~G~LL-r~l---l-~---d~~L~~~s~IIIDEaHE------Rsl----- 712 (1283)
.||..+.... .....+.|+|+|++.|. ..+ + . ...+..+.++||||||. |+.
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 7776443210 11236899999999983 222 1 1 23478899999999994 110
Q ss_pred ----chhHHHHHHHHHHHh-cC--C------c------------------------------------------------
Q 000790 713 ----STDVLFGILKKVVAR-RR--D------F------------------------------------------------ 731 (1283)
Q Consensus 713 ----~tD~ll~lLk~il~~-r~--d------l------------------------------------------------ 731 (1283)
.+ .+......+... .+ + -
T Consensus 221 ~~~~~~-~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 221 APRVQS-NLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCccch-HHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 11 122222222211 11 1 1
Q ss_pred -------------------------------------------------------------eEEEeccCc--CHHHHHHH
Q 000790 732 -------------------------------------------------------------KLIVTSATL--NAQKFSDF 748 (1283)
Q Consensus 732 -------------------------------------------------------------klIlmSATl--d~e~fa~~ 748 (1283)
++.+||.|. ..+.|.+.
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 222222222 11112221
Q ss_pred hCCCCeEeecCcccceeeeecC----CChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccc
Q 000790 749 FGSVPIFHIPGRTFPVNTLYSK----TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISST 824 (1283)
Q Consensus 749 f~~~pvi~i~gr~~pV~i~y~~----~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~ 824 (1283)
++ ..++.||... |+...-.+ ........+.+..+...| ..+.++||||++.+.++.++..|.+.
T Consensus 380 Y~-l~v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~-------- 447 (762)
T TIGR03714 380 YS-LSVVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE-------- 447 (762)
T ss_pred hC-CCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC--------
Confidence 11 1222222111 00000000 001112223333333333 34678999999999999998888652
Q ss_pred cCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC---------CeeEEEEcCCccceeccCCCCc
Q 000790 825 TREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD---------GIFYVIDTGYGKMKVYNPKMGM 895 (1283)
Q Consensus 825 ~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp---------~V~~VIDsGl~K~~~yD~~~g~ 895 (1283)
++.+..+||.+...++..+...+..| .|+||||+|++|+||+ ++.+||+ |+
T Consensus 448 -----gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit--------~~----- 507 (762)
T TIGR03714 448 -----GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT--------ER----- 507 (762)
T ss_pred -----CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe--------cC-----
Confidence 67788999999999988888877766 7999999999999999 9999998 77
Q ss_pred ccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 896 DALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 896 ~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
.|..... +||+|||||.| ||.|+.+++.++.
T Consensus 508 -----~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 508 -----MENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred -----CCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 4555555 99999999999 6999999987553
No 78
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=1.4e-23 Score=279.67 Aligned_cols=313 Identities=15% Similarity=0.103 Sum_probs=200.2
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccC--Ceee
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG--DKVG 663 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG--~~VG 663 (1283)
..+++|.++++.+..+++++++||||||||+++..+.+.. ...+.+++|++||++|+.|++..+.. ++..+| ..+.
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~-l~~~~~~~v~v~ 156 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIES-FCEKANLDVRLV 156 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHH-HHhhcCCceeEE
Confidence 6789999999999999999999999999999533322222 22356899999999999999999954 443333 2232
Q ss_pred EEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcc-----------hhHHHHHHH
Q 000790 664 YAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS-----------TDVLFGILK 722 (1283)
Q Consensus 664 y~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~-----------tD~ll~lLk 722 (1283)
+...... .......|+|+|+|.|...+... ...++++|||||||+ .+. .+|...+..
T Consensus 157 ~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 157 YYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECcee-ccccccccchhhhcCCChHHHHH
Confidence 2221111 11234789999999887765322 126799999999995 321 233222221
Q ss_pred ----H---------------------HHHh-cCCce-EEEeccCcCH-HHHHHHhCCCCeEeecCccc---ceeeeecCC
Q 000790 723 ----K---------------------VVAR-RRDFK-LIVTSATLNA-QKFSDFFGSVPIFHIPGRTF---PVNTLYSKT 771 (1283)
Q Consensus 723 ----~---------------------il~~-r~dlk-lIlmSATld~-e~fa~~f~~~pvi~i~gr~~---pV~i~y~~~ 771 (1283)
. .+.. ....+ ++++|||+.. .....+|...-.+.+..... .+...|...
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~ 314 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNP 314 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEEC
Confidence 1 1111 12333 6789999964 34445554332344432221 233334322
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH---HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHH
Q 000790 772 PCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEI---EAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKI 848 (1283)
Q Consensus 772 ~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eI---e~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I 848 (1283)
... .. ..+..++.. . +..+||||++++.+ +.++..|.+ .++.+.++||+ |..+
T Consensus 315 ~~~-~k-~~L~~ll~~---~-g~~gIVF~~t~~~~e~ae~la~~L~~-------------~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 315 EKI-IK-EHVRELLKK---L-GKGGLIFVPIDEGAEKAEEIEKYLLE-------------DGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CHH-HH-HHHHHHHHh---C-CCCeEEEEeccccchHHHHHHHHHHH-------------CCCeEEEecch-----HHHH
Confidence 111 11 122222221 1 35789999998764 677777754 38899999995 8899
Q ss_pred HhHhcCCCeeEEEec----CcccccCCCCC-eeEEEEcCCcccee----ccCCCCcccccccccCHHHHHHHhcccCCCC
Q 000790 849 FEKAKEGTRKCIVAT----NIAETSLTVDG-IFYVIDTGYGKMKV----YNPKMGMDALQVFPVSRAAADQRAGRAGRTG 919 (1283)
Q Consensus 849 ~~~f~~G~rKVLVAT----nIAEtGIdIp~-V~~VIDsGl~K~~~----yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g 919 (1283)
++.|.+|...||||| ++|++|||+|+ |+|||+.|+-|.++ |.+.... ... .....++.|||||.|
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEG 444 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccC
Confidence 999999999999999 59999999999 99999988876432 2211100 001 234567889999999
Q ss_pred -CCEEEEecChhhh
Q 000790 920 -PGTCYRLYTESAY 932 (1283)
Q Consensus 920 -~G~cyrLyt~~~~ 932 (1283)
++.|+..|...++
T Consensus 445 ~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 445 IPIEGVLDVFPEDV 458 (1638)
T ss_pred CcchhHHHhHHHHH
Confidence 6778755555443
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=5.7e-23 Score=254.81 Aligned_cols=300 Identities=14% Similarity=0.142 Sum_probs=194.7
Q ss_pred cCCCHHHHHHHHHHHHhC---CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 584 YLPIFSVRDELLQVIREN---QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~---qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
...+++||.+++..+..+ +..||+.|||+|||++....+... ...+||++|+.+|+.|....+.+......+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~- 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS- 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-
Confidence 345789999999998753 368999999999999987655432 356889999999999999998664433222
Q ss_pred eeeEEEee-eeccCCCceEEEechhHHHHHH---------ccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC
Q 000790 661 KVGYAIRF-EDVTGPSTLIKYMTDGVLLRET---------LKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD 730 (1283)
Q Consensus 661 ~VGy~ir~-e~~~s~~t~I~~~T~G~LLr~l---------l~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d 730 (1283)
.++.-... .........|+++|..++.... +....-..+++||+||||. .. .. .++.++.....
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A~----~fr~il~~l~a 401 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-AA----MFRRVLTIVQA 401 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-HH----HHHHHHHhcCc
Confidence 23211111 1111224678999998875321 1111124689999999994 32 22 23333332234
Q ss_pred ceEEEeccCc---C--HHHHHHHhCCCCeEee-------cCcccceee--eecCCChh---hHHHH--------------
Q 000790 731 FKLIVTSATL---N--AQKFSDFFGSVPIFHI-------PGRTFPVNT--LYSKTPCE---DYVEA-------------- 779 (1283)
Q Consensus 731 lklIlmSATl---d--~e~fa~~f~~~pvi~i-------~gr~~pV~i--~y~~~~~~---dyv~~-------------- 779 (1283)
...|++|||+ | ...+..+|| ..++.. .|..-++.. .+.+.... .|+..
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 4579999999 2 222333344 233322 233333322 12221111 12211
Q ss_pred ---HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCC-
Q 000790 780 ---AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG- 855 (1283)
Q Consensus 780 ---~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G- 855 (1283)
++..++..|. ..+.++||||.....++.++..| .+..+||.++..+|..+++.|+.|
T Consensus 481 K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------------~~~~I~G~ts~~ER~~il~~Fr~~~ 541 (732)
T TIGR00603 481 KFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------------GKPFIYGPTSQQERMQILQNFQHNP 541 (732)
T ss_pred HHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------------CCceEECCCCHHHHHHHHHHHHhCC
Confidence 1111222232 35679999999887776666544 134589999999999999999865
Q ss_pred CeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccc-cCHHHHHHHhcccCCCCC-CEE-------EEe
Q 000790 856 TRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFP-VSRAAADQRAGRAGRTGP-GTC-------YRL 926 (1283)
Q Consensus 856 ~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~P-iS~as~~QRaGRAGR~g~-G~c-------yrL 926 (1283)
..++||+|+++.+|||+|++++||. ++ .| -|..+|+||+||++|.++ |.+ |.|
T Consensus 542 ~i~vLv~SkVgdeGIDlP~a~vvI~--------~s----------~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~l 603 (732)
T TIGR00603 542 KVNTIFLSKVGDTSIDLPEANVLIQ--------IS----------SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSL 603 (732)
T ss_pred CccEEEEecccccccCCCCCCEEEE--------eC----------CCCCCHHHHHHHhcccccCCCCCccccccceEEEE
Confidence 7899999999999999999999997 44 33 489999999999999996 444 888
Q ss_pred cChhhh
Q 000790 927 YTESAY 932 (1283)
Q Consensus 927 yt~~~~ 932 (1283)
.+++..
T Consensus 604 Vs~dT~ 609 (732)
T TIGR00603 604 VSKDTQ 609 (732)
T ss_pred ecCCch
Confidence 876544
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.2e-22 Score=249.32 Aligned_cols=319 Identities=19% Similarity=0.148 Sum_probs=210.1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHH
Q 000790 573 AKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 573 ~~~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~ 652 (1283)
+-..+...---.+-.|++|...+..+..|+ |..+.||+|||+++.++++..... +..++|+.|+++||.|.++.+..
T Consensus 90 A~~rEa~~R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 90 ALVREASGRVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-GLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-CCeEEEEcCcHHHHHHHHHHHHH
Confidence 333444444456778899999999999999 999999999999999998887654 56899999999999999998855
Q ss_pred HhccccCCeeeEEEeeeec----cCCCceEEEechhHHHHHHccC---------------------------CCCCCCce
Q 000790 653 EMDTELGDKVGYAIRFEDV----TGPSTLIKYMTDGVLLRETLKD---------------------------SDLDKYRV 701 (1283)
Q Consensus 653 e~~~~lG~~VGy~ir~e~~----~s~~t~I~~~T~G~LLr~ll~d---------------------------~~L~~~s~ 701 (1283)
.+ ..+|..||..+..... ..-.+.|+|+|+.-|---.+.| ..+..+.+
T Consensus 167 l~-~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 167 LY-EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HH-hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 44 4578888876554331 1246789999988653221111 12466788
Q ss_pred EEEcCCCc------C-------Cc--c--hhHHHHHHHHHHHhcC--------C--------------------------
Q 000790 702 IVMDEAHE------R-------SL--S--TDVLFGILKKVVARRR--------D-------------------------- 730 (1283)
Q Consensus 702 IIIDEaHE------R-------sl--~--tD~ll~lLk~il~~r~--------d-------------------------- 730 (1283)
.|||||+. | .. . .++.......+..... +
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 99999882 0 00 0 1110000000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 000790 731 -------------------------------------------------------------------------------- 730 (1283)
Q Consensus 731 -------------------------------------------------------------------------------- 730 (1283)
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence
Q ss_pred ---ceEEEeccCcC--HHHHHHHhCCCCeEeecCcccceeee---ecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 000790 731 ---FKLIVTSATLN--AQKFSDFFGSVPIFHIPGRTFPVNTL---YSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG 802 (1283)
Q Consensus 731 ---lklIlmSATld--~e~fa~~f~~~pvi~i~gr~~pV~i~---y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g 802 (1283)
.++.+||||+. .+.|.++++-. ++.||-..-..... +......+.....+..+...+ ..+.++||||++
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t 482 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRS 482 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCc
Confidence 25666677762 34455555533 33333221111000 000111222333333322222 234679999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC---Cee---
Q 000790 803 QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD---GIF--- 876 (1283)
Q Consensus 803 ~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp---~V~--- 876 (1283)
.+.++.++..|.+ .++.+..|||.+...++. +..+..+...|+||||+|++|+||+ +|.
T Consensus 483 ~~~se~L~~~L~~-------------~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 483 VAASERLSALLRE-------------AGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred HHHHHHHHHHHHH-------------CCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcC
Confidence 9999999998865 278899999987655544 4445545567999999999999999 776
Q ss_pred --EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhh
Q 000790 877 --YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 877 --~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
+||+ || .|.|...|.||+|||||.| +|.|+.+++.++
T Consensus 548 GLhVI~--------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 548 GLHVIL--------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCEEEE--------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9998 66 7999999999999999999 699999998654
No 81
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=253.17 Aligned_cols=323 Identities=18% Similarity=0.213 Sum_probs=229.3
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
+-+..+|++++.++..+..|+|.|+|.+|||.++...+.-. .....+.++|.|-++|..|..+.+.+.|+. ||
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-----vg- 368 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD-----VG- 368 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc-----cc-
Confidence 45668999999999999999999999999999865544322 233568999999999999999999887763 33
Q ss_pred EEeeeeccCCCceEEEechhHHHHHHccCCC-CCCCceEEEcCCC-----cCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 665 AIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAH-----ERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 665 ~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~-L~~~s~IIIDEaH-----ERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
.+.++....+...+++||+++|..++....+ +.++..||+||+| ||++--+-. ++...+++++|++||
T Consensus 369 LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEV------iIMlP~HV~~IlLSA 442 (1248)
T KOG0947|consen 369 LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEV------IIMLPRHVNFILLSA 442 (1248)
T ss_pred eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceee------eeeccccceEEEEec
Confidence 4556667789999999999999998877654 7899999999999 344332211 223466899999999
Q ss_pred Cc-CHHHHHHHhCCC---Ce--EeecCcccceeeeecCC-Ch-------hhHHHHH------------------------
Q 000790 739 TL-NAQKFSDFFGSV---PI--FHIPGRTFPVNTLYSKT-PC-------EDYVEAA------------------------ 780 (1283)
Q Consensus 739 Tl-d~e~fa~~f~~~---pv--i~i~gr~~pV~i~y~~~-~~-------~dyv~~~------------------------ 780 (1283)
|+ |...|++|.|.. .+ +....|..|++.++... .. ..++...
T Consensus 443 TVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~ 522 (1248)
T KOG0947|consen 443 TVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARG 522 (1248)
T ss_pred cCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccc
Confidence 99 999999999863 23 33345666665543211 00 0001000
Q ss_pred --------------------------------HHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHH------------
Q 000790 781 --------------------------------VKQAMTIHITSPPGDILIFMTGQDEIEAACFALKER------------ 816 (1283)
Q Consensus 781 --------------------------------v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~------------ 816 (1283)
...++.......--+++|||-++..|+..++.|...
T Consensus 523 ~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~ 602 (1248)
T KOG0947|consen 523 GRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVH 602 (1248)
T ss_pred cccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHH
Confidence 000000011122347899999999999998887531
Q ss_pred --HHH---hhccccCCCC---------CeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcC
Q 000790 817 --MEQ---LISSTTREVP---------ELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTG 882 (1283)
Q Consensus 817 --l~~---l~~~~~~~~~---------~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsG 882 (1283)
+.+ .......+.| .-.+..+|||+-+-.+.-|...|..|-+|||+||-++++|||.|.-.+|+++
T Consensus 603 lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S- 681 (1248)
T KOG0947|consen 603 LFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS- 681 (1248)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee-
Confidence 000 0011111112 2247889999999999999999999999999999999999999987777762
Q ss_pred CccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEecChh
Q 000790 883 YGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 930 (1283)
Q Consensus 883 l~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~~ 930 (1283)
+.| +| .-...-+.+-+|.|++|||||-| .|.++.+....
T Consensus 682 l~K---hD------G~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 682 LRK---HD------GNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhh---cc------CcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 222 23 22234567789999999999999 49988887643
No 82
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.8e-23 Score=261.39 Aligned_cols=331 Identities=19% Similarity=0.220 Sum_probs=236.3
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
....+.++|++.+..|..+..|+|+||||||||.+...++...+. .+.++++|.|.++|..|.+..+..+++.- -..|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~v 193 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMV 193 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-cCCceEeccchhhhhhhHHHHHHHHhhhh-hhhc
Confidence 356678999999999999999999999999999987666655543 35679999999999999999999888844 2234
Q ss_pred eEEEeeeeccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHH--HHHHhcCCceEEEeccC
Q 000790 663 GYAIRFEDVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILK--KVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 663 Gy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk--~il~~r~dlklIlmSAT 739 (1283)
|. +.++-..++.+.+++||+++|..++..+ ..+..+..||+||+|. -.|-.-+.+. -++....++++|+||||
T Consensus 194 GL-~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy---i~D~eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 194 GL-MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY---IGDRERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred cc-eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee---ccccccchhHHHHHHhcCCCCcEEEEeCC
Confidence 42 3334456788999999999999888876 5689999999999993 1111112211 12234557899999999
Q ss_pred c-CHHHHHHHhC-----CCCeEeecCcccceeeeecCC-Ch-------hhHHHHHHH----H------------------
Q 000790 740 L-NAQKFSDFFG-----SVPIFHIPGRTFPVNTLYSKT-PC-------EDYVEAAVK----Q------------------ 783 (1283)
Q Consensus 740 l-d~e~fa~~f~-----~~pvi~i~gr~~pV~i~y~~~-~~-------~dyv~~~v~----~------------------ 783 (1283)
+ |+..|+.|++ .+.++....|..|...++... .. .+.+..... .
T Consensus 270 v~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 349 (1041)
T COG4581 270 VPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGR 349 (1041)
T ss_pred CCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccc
Confidence 9 9999999997 355666777777877766432 10 011111100 0
Q ss_pred --------------------HHHHhhcCCCCCEEEEcCCHHHHHHHHHHHH----------HH-HHHhhc-------ccc
Q 000790 784 --------------------AMTIHITSPPGDILIFMTGQDEIEAACFALK----------ER-MEQLIS-------STT 825 (1283)
Q Consensus 784 --------------------~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~----------e~-l~~l~~-------~~~ 825 (1283)
++........-++++|+=++..|+..+..+. +. +..++. ...
T Consensus 350 ~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed 429 (1041)
T COG4581 350 YARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEED 429 (1041)
T ss_pred ccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhh
Confidence 0111111223478999999999998887664 11 221111 111
Q ss_pred CCCC-C---------eEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCc
Q 000790 826 REVP-E---------LLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGM 895 (1283)
Q Consensus 826 ~~~~-~---------l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~ 895 (1283)
...| . -.+..+|++|-+..+..+...|..|-+|||+||-+++.|||+|.-++|+ +++.| ||.
T Consensus 430 ~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K---~dG---- 501 (1041)
T COG4581 430 RELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK---FDG---- 501 (1041)
T ss_pred hcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE---ecC----
Confidence 1121 1 1355789999999999999999999999999999999999999555554 56554 442
Q ss_pred ccccccccCHHHHHHHhcccCCCC---CCEEEEecCh
Q 000790 896 DALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTE 929 (1283)
Q Consensus 896 ~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~ 929 (1283)
-...+++..+|.|++|||||.| -|.++.+.+.
T Consensus 502 --~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 502 --NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred --CceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 2236899999999999999999 4999988543
No 83
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=1.2e-23 Score=236.96 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=211.3
Q ss_pred HHHHHHHHHH-HhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc---cCCeeeE
Q 000790 589 SVRDELLQVI-RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE---LGDKVGY 664 (1283)
Q Consensus 589 ~~Q~eil~~I-~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~---lG~~VGy 664 (1283)
+.|++++..+ ..+++|.|+.|||+|||+++.++.|-+ +++.||+.|..+|.......+.. +... +.....-
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLST 97 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhH
Confidence 5677777655 677899999999999999987776544 45888999999998877666522 2221 1111110
Q ss_pred EEeee-----eccCCCceEEEechhHH--------HHHHccCCCCCCCceEEEcCCCcCCcc-hhHHHHHH--HHHHHhc
Q 000790 665 AIRFE-----DVTGPSTLIKYMTDGVL--------LRETLKDSDLDKYRVIVMDEAHERSLS-TDVLFGIL--KKVVARR 728 (1283)
Q Consensus 665 ~ir~e-----~~~s~~t~I~~~T~G~L--------Lr~ll~d~~L~~~s~IIIDEaHERsl~-tD~ll~lL--k~il~~r 728 (1283)
.-|-. ....+.++|+|.||++. |+.|.+ -..+++|||||||+-+.+ -||-..+| -.+....
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~---r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~ 174 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN---RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC 174 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh---hceeeeEEechhhhHhhhccccCcchhhhhhHHhhC
Confidence 00000 02346789999999873 333322 345789999999984433 24433332 3444567
Q ss_pred CCceEEEeccCcCHHHHHH----HhCCCCeEeecCcccceeeeecCCChhhHHHHHHHH-------HHHHhh------cC
Q 000790 729 RDFKLIVTSATLNAQKFSD----FFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQ-------AMTIHI------TS 791 (1283)
Q Consensus 729 ~dlklIlmSATld~e~fa~----~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~-------~l~i~~------~~ 791 (1283)
+++..|.++||.+.+.-.+ .-...||-.+....|.-+.+|... ..+.+...+.. .+-.|. ..
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~ 253 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH-MKSFITDCLTVLADFSSSNLGKHEKASQNKKT 253 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH-HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence 8999999999997654333 333456655555555555555321 11111111111 111110 11
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCC
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 871 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGId 871 (1283)
-.|.-||||.|+++|+.++-.|.. .++....+|+||...+|..|-+.+.++...||+||+...+|||
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~-------------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVD 320 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEI-------------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVD 320 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhh-------------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccC
Confidence 247889999999999999887754 4888899999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 872 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 872 Ip~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
-|+|++||+ +| .|.+.+.|.|-.|||||.| +..|-..|+.++-
T Consensus 321 Kp~VRFViH--------W~----------~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 321 KPDVRFVIH--------WS----------PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred CcceeEEEe--------cC----------chhhhHHHHHhccccccCCCccceeeeecccch
Confidence 999999998 77 6888999999999999999 5778777777654
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.91 E-value=6.9e-23 Score=257.74 Aligned_cols=316 Identities=16% Similarity=0.169 Sum_probs=201.2
Q ss_pred CCCHHHHHHHHHHHHh---CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 585 LPIFSVRDELLQVIRE---NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~---~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
..+++.|.++++.|.+ ++++++.|+||||||.++...+.+.. ..+..+++++|+++|+.|+++++.+.++..+...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 3467899999999987 48899999999999999877665543 3467899999999999999999987776432221
Q ss_pred eeEEEee------eeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHH----HHHHHHHHHhcCCc
Q 000790 662 VGYAIRF------EDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVL----FGILKKVVARRRDF 731 (1283)
Q Consensus 662 VGy~ir~------e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~l----l~lLk~il~~r~dl 731 (1283)
.|..... .........|+++|.+.+. ..+.++++|||||+|+-+...+-- ..-+..+.....+.
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~ 295 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENI 295 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCC
Confidence 1110000 0012345789999998764 237889999999999754433210 01111222345688
Q ss_pred eEEEeccCcCHHHHHHHhCC-CCeEeecCcc----cc-eeeeecCCChh----hHHHHHHHHHHHHhhcCCCCCEEEEcC
Q 000790 732 KLIVTSATLNAQKFSDFFGS-VPIFHIPGRT----FP-VNTLYSKTPCE----DYVEAAVKQAMTIHITSPPGDILIFMT 801 (1283)
Q Consensus 732 klIlmSATld~e~fa~~f~~-~pvi~i~gr~----~p-V~i~y~~~~~~----dyv~~~v~~~l~i~~~~~~G~ILVFl~ 801 (1283)
++|++|||+..+.+.....+ ...+.++.+. .| +.+........ ..+...+...+...+ ..+.++|||+|
T Consensus 296 ~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l-~~g~qvll~~n 374 (679)
T PRK05580 296 PVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL-ERGEQVLLFLN 374 (679)
T ss_pred CEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH-HcCCeEEEEEc
Confidence 99999999998887765432 2333343332 23 22221111000 001111111111111 23457888887
Q ss_pred CHH------------------------------------------------------------HHHHHHHHHHHHHHHhh
Q 000790 802 GQD------------------------------------------------------------EIEAACFALKERMEQLI 821 (1283)
Q Consensus 802 g~~------------------------------------------------------------eIe~l~~~L~e~l~~l~ 821 (1283)
.+. .++.+++.|.+
T Consensus 375 rrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~------ 448 (679)
T PRK05580 375 RRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE------ 448 (679)
T ss_pred CCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH------
Confidence 532 22233333322
Q ss_pred ccccCCCCCeEEEEecCCCC--HHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCccccc
Q 000790 822 SSTTREVPELLILPIYSQLP--ADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ 899 (1283)
Q Consensus 822 ~~~~~~~~~l~Il~LHs~L~--~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~ 899 (1283)
..++..|..+|+++. ..++.++++.|.+|...|||+|++++.|+|+|+|.+|+-.. +|....+..+.
T Consensus 449 -----~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~------aD~~l~~pdfr 517 (679)
T PRK05580 449 -----LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFR 517 (679)
T ss_pred -----hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc------CchhccCCccc
Confidence 135678999999987 45788999999999999999999999999999999996411 33222222222
Q ss_pred ccccCHHHHHHHhcccCCCC-CCEEEE
Q 000790 900 VFPVSRAAADQRAGRAGRTG-PGTCYR 925 (1283)
Q Consensus 900 ~~PiS~as~~QRaGRAGR~g-~G~cyr 925 (1283)
..-.....+.|++|||||.+ +|.|+.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 22234578999999999977 588884
No 85
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=6.5e-24 Score=251.63 Aligned_cols=322 Identities=20% Similarity=0.240 Sum_probs=234.0
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
-+.++|..+|..|..++.|+|+|.|.+|||.++...|... +..+.+|++|.|-++|..|.++.+..||+ .+|.-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLM---- 202 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK-DVGLM---- 202 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhc-cccee----
Confidence 3568999999999999999999999999998876655544 44567999999999999999999999887 23332
Q ss_pred EeeeeccCCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCC-----cCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 666 IRFEDVTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAH-----ERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 666 ir~e~~~s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaH-----ERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.++-..++....++||+++|..++.... .+..+..||+||+| ||++--+- .++-...+++.|++|||
T Consensus 203 -TGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEE------TIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 203 -TGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEE------TIILLPDNVRFVFLSAT 275 (1041)
T ss_pred -ecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeee------eEEeccccceEEEEecc
Confidence 2333456888899999999988887654 48899999999999 34443221 11223567999999999
Q ss_pred c-CHHHHHHHhC-----CCCeEeecCcccceeeeecCC----------ChhhHHHHHHHHHH------------------
Q 000790 740 L-NAQKFSDFFG-----SVPIFHIPGRTFPVNTLYSKT----------PCEDYVEAAVKQAM------------------ 785 (1283)
Q Consensus 740 l-d~e~fa~~f~-----~~pvi~i~gr~~pV~i~y~~~----------~~~dyv~~~v~~~l------------------ 785 (1283)
+ |+..|++|.. .|.|+...-|..|+..+..+. ....+-+..+..++
T Consensus 276 iPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k 355 (1041)
T KOG0948|consen 276 IPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKK 355 (1041)
T ss_pred CCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccc
Confidence 9 9999999985 366777777777766542220 00011111111111
Q ss_pred --------------------HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHH----------HHHhh-------ccccCCC
Q 000790 786 --------------------TIHITSPPGDILIFMTGQDEIEAACFALKER----------MEQLI-------SSTTREV 828 (1283)
Q Consensus 786 --------------------~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~----------l~~l~-------~~~~~~~ 828 (1283)
.........++|||+-++++|+..+-.+.+. +..++ +......
T Consensus 356 ~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~L 435 (1041)
T KOG0948|consen 356 GRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDREL 435 (1041)
T ss_pred cccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccc
Confidence 1111223458999999999999988766421 11111 1111122
Q ss_pred C---------CeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCccccc
Q 000790 829 P---------ELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ 899 (1283)
Q Consensus 829 ~---------~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~ 899 (1283)
| .-.|..+||||-+-.+.-|.-.|..|-+|||+||-+...|+|.|.-++|+ ...+.||. -.
T Consensus 436 Pqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG------~~ 505 (1041)
T KOG0948|consen 436 PQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDG------KK 505 (1041)
T ss_pred hHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCC------cc
Confidence 2 22477899999999999999999999999999999999999999777776 33444663 33
Q ss_pred ccccCHHHHHHHhcccCCCC---CCEEEEecChh
Q 000790 900 VFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 930 (1283)
Q Consensus 900 ~~PiS~as~~QRaGRAGR~g---~G~cyrLyt~~ 930 (1283)
..|+|.-+|+|++|||||-| .|+|+.+..+.
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 47999999999999999999 49999998754
No 86
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=9e-23 Score=267.25 Aligned_cols=281 Identities=17% Similarity=0.153 Sum_probs=181.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 579 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 579 ~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
.........+++|..+++.+..|++++++||||||||+.+ +++.......+.+++|++|||+||.|++..+.... ...
T Consensus 71 f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~-~~~ 148 (1171)
T TIGR01054 71 FKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLA-EKA 148 (1171)
T ss_pred HHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHH-Hhc
Confidence 3344455788999999999999999999999999999843 33333333346789999999999999999985543 333
Q ss_pred CCe---eeEEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcc----hhHHHH--
Q 000790 659 GDK---VGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS----TDVLFG-- 719 (1283)
Q Consensus 659 G~~---VGy~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~----tD~ll~-- 719 (1283)
|.. +++-..... .......|+++|+|.|.+.+..-. .++++|||||||. .+. .|-++.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~-~L~~~k~vd~il~ll 225 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDA-LLKASKNVDKLLKLL 225 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHh-hhhccccHHHHHHHc
Confidence 321 221111110 112347899999999987654311 1899999999994 333 111111
Q ss_pred -----HHHHH----------------------H-HhcCCc--eEEEeccCcCHHHHH-HHhCCCCeEeecCcc---ccee
Q 000790 720 -----ILKKV----------------------V-ARRRDF--KLIVTSATLNAQKFS-DFFGSVPIFHIPGRT---FPVN 765 (1283)
Q Consensus 720 -----lLk~i----------------------l-~~r~dl--klIlmSATld~e~fa-~~f~~~pvi~i~gr~---~pV~ 765 (1283)
.+..+ + ...... .+|++|||+....+. .+|...-.+.+.... ..+.
T Consensus 226 GF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~ 305 (1171)
T TIGR01054 226 GFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVV 305 (1171)
T ss_pred CCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceE
Confidence 11111 1 111223 367899995222222 233322223333222 1234
Q ss_pred eeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCH---HHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCH
Q 000790 766 TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ---DEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPA 842 (1283)
Q Consensus 766 i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~---~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~ 842 (1283)
..|..... .. ..+..++.. -+..+||||++. +.++.++..|.+ .++.+..+||+++.
T Consensus 306 ~~~~~~~~--~~-~~L~~ll~~----l~~~~IVFv~t~~~~~~a~~l~~~L~~-------------~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 306 DVYVEDED--LK-ETLLEIVKK----LGTGGIVYVSIDYGKEKAEEIAEFLEN-------------HGVKAVAYHATKPK 365 (1171)
T ss_pred EEEEeccc--HH-HHHHHHHHH----cCCCEEEEEeccccHHHHHHHHHHHHh-------------CCceEEEEeCCCCH
Confidence 44432221 11 112222221 135789999998 889988888864 27889999999973
Q ss_pred HHHHHHHhHhcCCCeeEEEe----cCcccccCCCCC-eeEEEEcCCcccee
Q 000790 843 DLQAKIFEKAKEGTRKCIVA----TNIAETSLTVDG-IFYVIDTGYGKMKV 888 (1283)
Q Consensus 843 ~er~~I~~~f~~G~rKVLVA----TnIAEtGIdIp~-V~~VIDsGl~K~~~ 888 (1283)
.+++.|++|..+|||| |++|++|||||+ |+|||++|.-+.++
T Consensus 366 ----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 366 ----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred ----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 6899999999999999 599999999999 89999999887653
No 87
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.5e-22 Score=251.24 Aligned_cols=308 Identities=21% Similarity=0.215 Sum_probs=196.0
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeee
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VG 663 (1283)
.+-.|++|...+..+..| .|+.+.||+|||+++.++++...+. +..+.|+.|++.||.+.+..+.. +...+|..||
T Consensus 76 g~~p~~vQl~~~~~l~~G--~Iaem~TGeGKTL~a~lp~~l~al~-G~~v~VvTpt~~LA~qd~e~~~~-l~~~lGl~v~ 151 (790)
T PRK09200 76 GMRPYDVQLIGALVLHEG--NIAEMQTGEGKTLTATMPLYLNALE-GKGVHLITVNDYLAKRDAEEMGQ-VYEFLGLTVG 151 (790)
T ss_pred CCCCchHHHHhHHHHcCC--ceeeecCCCcchHHHHHHHHHHHHc-CCCeEEEeCCHHHHHHHHHHHHH-HHhhcCCeEE
Confidence 344455555444444444 4999999999999998888765554 56788889999999999998854 4455788888
Q ss_pred EEEeeee-c----cCCCceEEEechhHH----HH-HHcc---CCCCCCCceEEEcCCCc------CCc--------chhH
Q 000790 664 YAIRFED-V----TGPSTLIKYMTDGVL----LR-ETLK---DSDLDKYRVIVMDEAHE------RSL--------STDV 716 (1283)
Q Consensus 664 y~ir~e~-~----~s~~t~I~~~T~G~L----Lr-~ll~---d~~L~~~s~IIIDEaHE------Rsl--------~tD~ 716 (1283)
..+.... . ..-.+.|+|+|++.| |+ .+.. ...+..+.++||||||. |+. ....
T Consensus 152 ~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~ 231 (790)
T PRK09200 152 LNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSN 231 (790)
T ss_pred EEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccH
Confidence 7665443 1 123578999999988 22 2211 12468899999999994 111 0001
Q ss_pred HHHHHHHHHHhc-C--------CceEEEe---------------------------------------------------
Q 000790 717 LFGILKKVVARR-R--------DFKLIVT--------------------------------------------------- 736 (1283)
Q Consensus 717 ll~lLk~il~~r-~--------dlklIlm--------------------------------------------------- 736 (1283)
+......+.... . +.+.|.+
T Consensus 232 ~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~ 311 (790)
T PRK09200 232 LYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGE 311 (790)
T ss_pred HHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCE
Confidence 222222222110 0 1122222
Q ss_pred ----------------------------------------------------------ccCc--CHHHHHHHhCCCCeEe
Q 000790 737 ----------------------------------------------------------SATL--NAQKFSDFFGSVPIFH 756 (1283)
Q Consensus 737 ----------------------------------------------------------SATl--d~e~fa~~f~~~pvi~ 756 (1283)
|.|. ..+.|.+.++ .+++.
T Consensus 312 v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~-l~v~~ 390 (790)
T PRK09200 312 IVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN-MEVVQ 390 (790)
T ss_pred EEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC-CcEEE
Confidence 2222 0111111111 11222
Q ss_pred ecCcccceeeeecC----CChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeE
Q 000790 757 IPGRTFPVNTLYSK----TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELL 832 (1283)
Q Consensus 757 i~gr~~pV~i~y~~----~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~ 832 (1283)
||... |+.-.-.+ ....+.....+..+...| ..+.++||||++.+.++.++..|.+. ++.
T Consensus 391 IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~-------------gi~ 454 (790)
T PRK09200 391 IPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA-------------GIP 454 (790)
T ss_pred CCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-------------CCC
Confidence 22110 00000000 001112222222222222 34678999999999999999888652 788
Q ss_pred EEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCC---CCee-----EEEEcCCccceeccCCCCcccccccccC
Q 000790 833 ILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTV---DGIF-----YVIDTGYGKMKVYNPKMGMDALQVFPVS 904 (1283)
Q Consensus 833 Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdI---p~V~-----~VIDsGl~K~~~yD~~~g~~~L~~~PiS 904 (1283)
+..|||.+...++..+...+..| .|+||||+|++|+|| |+|. +||+ || .|.+
T Consensus 455 ~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--------~d----------~p~s 514 (790)
T PRK09200 455 HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG--------TE----------RMES 514 (790)
T ss_pred EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe--------cc----------CCCC
Confidence 89999999988888888777765 799999999999999 6998 9998 66 7999
Q ss_pred HHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 905 RAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 905 ~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
...|.||+|||||.| +|.|+.+++.++.
T Consensus 515 ~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 515 RRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999999999999999 6999999986553
No 88
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.9e-24 Score=240.84 Aligned_cols=308 Identities=19% Similarity=0.206 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC---CCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT---NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~---~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
.++|...++.|+++++++..+-||||||.++.+++++.+... +.+.+++.|+|+||.|+.+.+ ++++.-.+..+..
T Consensus 45 tpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvv-kdlgrgt~lr~s~ 123 (529)
T KOG0337|consen 45 TPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVV-KDLGRGTKLRQSL 123 (529)
T ss_pred CchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHH-HHhccccchhhhh
Confidence 478899999999999999999999999999999999875543 358899999999999999888 4555433332222
Q ss_pred EEeeee------ccCCCceEEEechhHHHHHHcc-CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 665 AIRFED------VTGPSTLIKYMTDGVLLRETLK-DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 665 ~ir~e~------~~s~~t~I~~~T~G~LLr~ll~-d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+.++. ..+.+..|+++|||+++..... +-.|+.+.+||+||++ |.+.+.|...+-..+.....+.+.++||
T Consensus 124 ~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllfS 202 (529)
T KOG0337|consen 124 LVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLFS 202 (529)
T ss_pred hcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEEe
Confidence 222222 2345788999999998865432 2358899999999999 8888877666666665667788999999
Q ss_pred cCcCHH--HHHHHhCCCCeEe---ecCcccc-eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 738 ATLNAQ--KFSDFFGSVPIFH---IPGRTFP-VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 738 ATld~e--~fa~~f~~~pvi~---i~gr~~p-V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
||+.-. .|++-=...|+.. ++.+.-+ ++..|......+-. +++..++.-+ -.+...+||+++..+++.+..
T Consensus 203 atlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~-aaLl~il~~~--~~~~~t~vf~~tk~hve~~~~ 279 (529)
T KOG0337|consen 203 ATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKE-AALLSILGGR--IKDKQTIVFVATKHHVEYVRG 279 (529)
T ss_pred ccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHH-HHHHHHHhcc--ccccceeEEecccchHHHHHH
Confidence 999533 5554322233321 1111100 11111111111111 1111111111 124579999999999999888
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
.|.. .++.+-.+||+|.+..|..-+..|..++..++|.|++|++|+|||...-||| ||
T Consensus 280 ll~~-------------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd- 337 (529)
T KOG0337|consen 280 LLRD-------------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD- 337 (529)
T ss_pred HHHh-------------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------cc-
Confidence 7764 3777888999999999999999999999999999999999999999999999 77
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhh
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
.|....-|+||.||+.|.| .|..|-|....+
T Consensus 338 ---------~p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 338 ---------FPPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ---------CCCCCceEEEEecchhhccccceEEEEEeccc
Confidence 7888889999999999999 599999987643
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.90 E-value=5.9e-22 Score=251.76 Aligned_cols=299 Identities=19% Similarity=0.160 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchHHHHHHHHHHHHHHhcc-----ccC
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEEMDT-----ELG 659 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~LA~qvakrVa~e~~~-----~lG 659 (1283)
..+++|..+.........+||.+|||+|||.+++.++...... ....|++..||++++.++++|+.+.+.. .++
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~ 365 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLI 365 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4678998876555567889999999999999987655432211 2357999999999999999999753221 111
Q ss_pred CeeeEEE---eeee--------------------------ccCCCceEEEechhHHHHHHccCC--CCCC----CceEEE
Q 000790 660 DKVGYAI---RFED--------------------------VTGPSTLIKYMTDGVLLRETLKDS--DLDK----YRVIVM 704 (1283)
Q Consensus 660 ~~VGy~i---r~e~--------------------------~~s~~t~I~~~T~G~LLr~ll~d~--~L~~----~s~III 704 (1283)
...|... .+.. ...--..|+|+|.-.++...+... .+.. -++|||
T Consensus 366 L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIi 445 (878)
T PRK09694 366 LAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIV 445 (878)
T ss_pred eecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEE
Confidence 1111110 0000 000125799999887775544321 1222 258999
Q ss_pred cCCCcCCcchh-HHHHHHHHHHHhcCCceEEEeccCcCHHH---HHHHhCCC---------CeEeecC----cccc----
Q 000790 705 DEAHERSLSTD-VLFGILKKVVARRRDFKLIVTSATLNAQK---FSDFFGSV---------PIFHIPG----RTFP---- 763 (1283)
Q Consensus 705 DEaHERsl~tD-~ll~lLk~il~~r~dlklIlmSATld~e~---fa~~f~~~---------pvi~i~g----r~~p---- 763 (1283)
||+|.....+. ++..+|+.+.. ...++|+||||+.... +.+-++.. |.+...+ ..++
T Consensus 446 DEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 446 DEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred echhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 99997555444 33444444333 3568999999996433 33323321 1111110 0000
Q ss_pred ---------eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEE
Q 000790 764 ---------VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLIL 834 (1283)
Q Consensus 764 ---------V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il 834 (1283)
+.+..............+..++.. ...++.+|||||+++.+..++..|.+.. .....+.
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~--~~~g~~vLVf~NTV~~Aq~ly~~L~~~~----------~~~~~v~ 591 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAA--ANAGAQVCLICNLVDDAQKLYQRLKELN----------NTQVDID 591 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHH--HhcCCEEEEEECCHHHHHHHHHHHHhhC----------CCCceEE
Confidence 111000000000011222222221 1346789999999999999999887531 1246789
Q ss_pred EecCCCCHHHHH----HHHhHh-cCCC---eeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 000790 835 PIYSQLPADLQA----KIFEKA-KEGT---RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 906 (1283)
Q Consensus 835 ~LHs~L~~~er~----~I~~~f-~~G~---rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~a 906 (1283)
.+||.++..+|. ++++.| ++|. .+|||||+|+|.||||+ +++||. + ..| ..
T Consensus 592 llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlIt--------d----------laP--id 650 (878)
T PRK09694 592 LFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLIT--------Q----------LCP--VD 650 (878)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEE--------C----------CCC--HH
Confidence 999999999984 566777 6665 47999999999999995 788884 1 145 57
Q ss_pred HHHHHhcccCCCC
Q 000790 907 AADQRAGRAGRTG 919 (1283)
Q Consensus 907 s~~QRaGRAGR~g 919 (1283)
.++||+||+||.+
T Consensus 651 sLiQRaGR~~R~~ 663 (878)
T PRK09694 651 LLFQRLGRLHRHH 663 (878)
T ss_pred HHHHHHhccCCCC
Confidence 9999999999986
No 90
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=4.8e-23 Score=260.88 Aligned_cols=305 Identities=20% Similarity=0.201 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEe-
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIR- 667 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir- 667 (1283)
+-|.++|.+++.|++++|..|||.||++++.++.+-. ++..+|+.|...|...+...+. ..+......-+-+..
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----~gitvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~q~~~ 341 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----GGVTVVISPLISLMQDQVTHLS-KKGIPACFLSSIQTAA 341 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----CCceEEeccHHHHHHHHHHhhh-hcCcceeeccccccHH
Confidence 6788999999999999999999999999976654322 4588999999999987766662 222111111010000
Q ss_pred -----eeeccC--CCceEEEechhHHHHHHc---cCCCCCC---CceEEEcCCCcCCcch-hHH--HHHHHHHHHhcCCc
Q 000790 668 -----FEDVTG--PSTLIKYMTDGVLLRETL---KDSDLDK---YRVIVMDEAHERSLST-DVL--FGILKKVVARRRDF 731 (1283)
Q Consensus 668 -----~e~~~s--~~t~I~~~T~G~LLr~ll---~d~~L~~---~s~IIIDEaHERsl~t-D~l--l~lLk~il~~r~dl 731 (1283)
+..... +..+|+|+||+.+...-. ....|.. +.++||||||+-+-+. ||- ...|..+....+.+
T Consensus 342 ~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~v 421 (941)
T KOG0351|consen 342 ERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGV 421 (941)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCC
Confidence 011122 367899999998654311 1122333 8899999999844333 332 22344445567788
Q ss_pred eEEEeccCcCHH---HHHHHhC--CCCeEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 000790 732 KLIVTSATLNAQ---KFSDFFG--SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEI 806 (1283)
Q Consensus 732 klIlmSATld~e---~fa~~f~--~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eI 806 (1283)
.+|.+|||.... ++.+-++ ++.++. .. ..+-..+|.-.+..+ ..........+....+.+.+||||.++.+|
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~~~~-~s-fnR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPELFK-SS-FNRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKEC 498 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcceec-cc-CCCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchH
Confidence 999999999543 3444443 223221 11 112222222111111 122333334444556788999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccc
Q 000790 807 EAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKM 886 (1283)
Q Consensus 807 e~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~ 886 (1283)
+.+...|... ++...+||+||+..+|..|-..|-.++.+|||||-++.+|||.|||++||+++
T Consensus 499 e~vs~~L~~~-------------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~---- 561 (941)
T KOG0351|consen 499 EQVSAVLRSL-------------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS---- 561 (941)
T ss_pred HHHHHHHHHh-------------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC----
Confidence 9999988764 57788999999999999999999999999999999999999999999999955
Q ss_pred eeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 887 KVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 887 ~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
.|.|.+.|.|-+|||||.| +-.|..||+..++
T Consensus 562 --------------lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 562 --------------LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred --------------CchhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 5999999999999999999 6999999998776
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=8.9e-23 Score=248.65 Aligned_cols=296 Identities=16% Similarity=0.185 Sum_probs=185.6
Q ss_pred EEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEe------eeeccCCCceE
Q 000790 605 VVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIR------FEDVTGPSTLI 678 (1283)
Q Consensus 605 II~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir------~e~~~s~~t~I 678 (1283)
+|.|+||||||.++...+.+. +..++.+++++|+++|+.|+++++.+.++..+....+.... +.........|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999999987665443 44567899999999999999999987765432111110000 00012245689
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHH----HHHHHHHHhcCCceEEEeccCcCHHHHHHHhCCC-C
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLF----GILKKVVARRRDFKLIVTSATLNAQKFSDFFGSV-P 753 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll----~lLk~il~~r~dlklIlmSATld~e~fa~~f~~~-p 753 (1283)
+++|...+. ..+.++++|||||+|+-+...+-.. --+..+.....+.++|++|||+..+.+.....+. .
T Consensus 80 VVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~ 153 (505)
T TIGR00595 80 VIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYR 153 (505)
T ss_pred EECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeE
Confidence 999988663 2378899999999997554332111 0122223345688999999999988887765432 2
Q ss_pred eEeec----Ccccce-eeeecCCCh-hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH----------------------
Q 000790 754 IFHIP----GRTFPV-NTLYSKTPC-EDYVEAAVKQAMTIHITSPPGDILIFMTGQDE---------------------- 805 (1283)
Q Consensus 754 vi~i~----gr~~pV-~i~y~~~~~-~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~e---------------------- 805 (1283)
.+.++ +...|. .+.-..... ...+...+...+.-.+ ..++++|||+|++..
T Consensus 154 ~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l-~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l 232 (505)
T TIGR00595 154 LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL-AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSL 232 (505)
T ss_pred EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH-HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCce
Confidence 22222 222332 221111110 0111111222222211 235689999877643
Q ss_pred --------------------------------------HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHH--
Q 000790 806 --------------------------------------IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQ-- 845 (1283)
Q Consensus 806 --------------------------------------Ie~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er-- 845 (1283)
++.+.+.|.+. .++..|..+|+.++....
T Consensus 233 ~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-----------fp~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 233 TYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-----------FPGARIARIDSDTTSRKGAH 301 (505)
T ss_pred EEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-----------CCCCcEEEEecccccCccHH
Confidence 23333333322 367889999999987655
Q ss_pred HHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEE
Q 000790 846 AKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCY 924 (1283)
Q Consensus 846 ~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cy 924 (1283)
..+++.|.+|...|||+|++++.|+|+|+|++|+-.. +|....+..+...-.....+.|++|||||.+ +|.++
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 7899999999999999999999999999999885311 4422222222222234578999999999977 58887
Q ss_pred E
Q 000790 925 R 925 (1283)
Q Consensus 925 r 925 (1283)
.
T Consensus 376 i 376 (505)
T TIGR00595 376 I 376 (505)
T ss_pred E
Confidence 3
No 92
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.89 E-value=1.9e-21 Score=239.92 Aligned_cols=311 Identities=19% Similarity=0.171 Sum_probs=198.1
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
+.|-++++..+++-.+.-++..|..++||+|||+++.++++-..+. +..+.|+.|++.||.|.++.+... ...+|..|
T Consensus 51 R~lg~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~VvTpt~~LA~qdae~~~~l-~~~LGLsv 128 (745)
T TIGR00963 51 RVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAEWMGQV-YRFLGLSV 128 (745)
T ss_pred HHhCCCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHh-CCCEEEEcCCHHHHHHHHHHHHHH-hccCCCeE
Confidence 3344444444444444444445999999999999988887544443 446889999999999999988554 45678888
Q ss_pred eEEEeeeec----cCCCceEEEechhHH-HHHHccC-------CCCCCCceEEEcCCCcCCc--------------chhH
Q 000790 663 GYAIRFEDV----TGPSTLIKYMTDGVL-LRETLKD-------SDLDKYRVIVMDEAHERSL--------------STDV 716 (1283)
Q Consensus 663 Gy~ir~e~~----~s~~t~I~~~T~G~L-Lr~ll~d-------~~L~~~s~IIIDEaHERsl--------------~tD~ 716 (1283)
|..+...+. ..-.+.|+|+|++.| +..+... ..+..+.++||||||.-.+ ..+.
T Consensus 129 ~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 129 GLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 866544321 123468999999988 5444322 2478899999999994111 0111
Q ss_pred HHHHHHHHHHh-cC--------Cc--------------------------------------------------------
Q 000790 717 LFGILKKVVAR-RR--------DF-------------------------------------------------------- 731 (1283)
Q Consensus 717 ll~lLk~il~~-r~--------dl-------------------------------------------------------- 731 (1283)
+......+... .. +-
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~ 288 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGE 288 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 11111111110 00 01
Q ss_pred -----------------------------------------------------eEEEeccCc--CHHHHHHHhCCCCeEe
Q 000790 732 -----------------------------------------------------KLIVTSATL--NAQKFSDFFGSVPIFH 756 (1283)
Q Consensus 732 -----------------------------------------------------klIlmSATl--d~e~fa~~f~~~pvi~ 756 (1283)
++.+||.|. ..+.|.+.++ .+++.
T Consensus 289 V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~-l~vv~ 367 (745)
T TIGR00963 289 VVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN-LEVVV 367 (745)
T ss_pred EEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC-CCEEE
Confidence 122222222 1111111111 11222
Q ss_pred ecCcccceeeeecC----CChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeE
Q 000790 757 IPGRTFPVNTLYSK----TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELL 832 (1283)
Q Consensus 757 i~gr~~pV~i~y~~----~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~ 832 (1283)
||... |+.....+ ....+...+.+..+...| ..+.++||||++.+.++.++..|.+. ++.
T Consensus 368 IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~-------------gi~ 431 (745)
T TIGR00963 368 VPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER-------------GIP 431 (745)
T ss_pred eCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc-------------CCC
Confidence 22110 00000000 001122333444444444 34778999999999999999988763 667
Q ss_pred EEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCC-------eeEEEEcCCccceeccCCCCcccccccccCH
Q 000790 833 ILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG-------IFYVIDTGYGKMKVYNPKMGMDALQVFPVSR 905 (1283)
Q Consensus 833 Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~-------V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~ 905 (1283)
...||+. +.+|...+..|..+...|+||||+|++|+||+. ..+||+ |+ .|.|.
T Consensus 432 ~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~--------t~----------~p~s~ 491 (745)
T TIGR00963 432 HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG--------TE----------RHESR 491 (745)
T ss_pred eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe--------cC----------CCCcH
Confidence 7889998 778889999999999999999999999999998 459997 55 69999
Q ss_pred HHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 906 AAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 906 as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
..+.||+|||||.| ||.+..+.+.++.
T Consensus 492 ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 492 RIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999999999 6999988886653
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=4.1e-21 Score=213.08 Aligned_cols=294 Identities=21% Similarity=0.297 Sum_probs=210.9
Q ss_pred HHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhc-cccCCeeeEEEeeee
Q 000790 592 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD-TELGDKVGYAIRFED 670 (1283)
Q Consensus 592 ~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~-~~lG~~VGy~ir~e~ 670 (1283)
.++++.|.+.+.+||.|-||+|||..+.+.+ +..+.+++.|++..||...+.+++.|+.+.|. +.+.... +++
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i-~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Ly-----g~S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGI-EQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLY-----GDS 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHH-HHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEe-----cCC
Confidence 4578888999999999999999999876644 44456688999999999999999999988776 3332221 222
Q ss_pred ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHH-HHHHHHhcCCceEEEeccCcCHHHHHHHh
Q 000790 671 VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGI-LKKVVARRRDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 671 ~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~l-Lk~il~~r~dlklIlmSATld~e~fa~~f 749 (1283)
..--.+.++++|...|++.. ..+++|||||++--.+..|..+.+ +++. +.+.--+|.||||..-+.-.+..
T Consensus 181 ~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHHhh
Confidence 22234889999999999875 347999999999877777765544 3332 33456789999998655444443
Q ss_pred C-CCCeEeecCc----ccceeeeecCCChhhHHH-----HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Q 000790 750 G-SVPIFHIPGR----TFPVNTLYSKTPCEDYVE-----AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 819 (1283)
Q Consensus 750 ~-~~pvi~i~gr----~~pV~i~y~~~~~~dyv~-----~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~ 819 (1283)
. +...+.+|.| ..|+..+.-......++. ..+...+..+. ..+.++|||+|+.+..+.++..|++.+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~-- 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKL-- 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhC--
Confidence 3 3344666644 344544433333333332 24444444443 236789999999999999999987643
Q ss_pred hhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCccccc
Q 000790 820 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ 899 (1283)
Q Consensus 820 l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~ 899 (1283)
+...+..+||.- ..|.+..+.|++|+.+|||+|.|+|+|+|+|+|+++| ++...
T Consensus 330 ---------~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V---------lgaeh------ 383 (441)
T COG4098 330 ---------PKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV---------LGAEH------ 383 (441)
T ss_pred ---------CccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE---------ecCCc------
Confidence 567788899863 4677888999999999999999999999999999987 33221
Q ss_pred ccccCHHHHHHHhcccCCCC--C-CE-EEEecCh
Q 000790 900 VFPVSRAAADQRAGRAGRTG--P-GT-CYRLYTE 929 (1283)
Q Consensus 900 ~~PiS~as~~QRaGRAGR~g--~-G~-cyrLyt~ 929 (1283)
.-.+.++.+|.+||+||.- | |. ||.-|..
T Consensus 384 -~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 384 -RVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred -ccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 1257889999999999976 4 54 4444443
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=1.8e-20 Score=225.87 Aligned_cols=309 Identities=18% Similarity=0.238 Sum_probs=222.0
Q ss_pred HHhcCC--CHHHHHHHHHHHHhC------CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHH
Q 000790 581 QRQYLP--IFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 581 ~R~~LP--i~~~Q~eil~~I~~~------qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~ 652 (1283)
....|| ++..|+.++.-|... -+=+|+|.-|||||.++.+.++... ..+.++..++||-+||.|-+..+++
T Consensus 255 ~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-~~G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 255 FLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-EAGYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred HHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-HcCCeeEEeccHHHHHHHHHHHHHH
Confidence 334444 678899888888653 2458999999999999888777653 3467899999999999999999976
Q ss_pred HhccccCCeeeEEEeeee----------ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHH
Q 000790 653 EMDTELGDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILK 722 (1283)
Q Consensus 653 e~~~~lG~~VGy~ir~e~----------~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk 722 (1283)
.+. .+|..|++-+.... ..+....|++.|...+. .+..+.++.+|||||=|..++..-.
T Consensus 334 ~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRFGV~QR~------ 402 (677)
T COG1200 334 WLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRFGVHQRL------ 402 (677)
T ss_pred Hhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cceeecceeEEEEeccccccHHHHH------
Confidence 654 45666665443322 33567899999987663 3346889999999999964443321
Q ss_pred HHHHhcC-CceEEEeccCcCHHHHH-HHhCCCCe---EeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEE
Q 000790 723 KVVARRR-DFKLIVTSATLNAQKFS-DFFGSVPI---FHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 797 (1283)
Q Consensus 723 ~il~~r~-dlklIlmSATld~e~fa-~~f~~~pv---i~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~IL 797 (1283)
.+..... .+.+++||||+=+..++ ..|++-.+ -..|.-.-|+.....+....+.+-..+...+. .+.++.
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~-----~GrQaY 477 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA-----KGRQAY 477 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH-----cCCEEE
Confidence 2223444 57899999999555544 45665433 23444445777777665444433333333222 367899
Q ss_pred EEcCCHHHHHHH----HHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC
Q 000790 798 IFMTGQDEIEAA----CFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD 873 (1283)
Q Consensus 798 VFl~g~~eIe~l----~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp 873 (1283)
|-||-.++-+.+ +..+.+.+.. ..+++.|..+||.|++++++.|++.|++|+.+|||||.+.|-|||+|
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~-------~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP 550 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKS-------FLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP 550 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHH-------HcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCC
Confidence 999988766532 1222222221 23688899999999999999999999999999999999999999999
Q ss_pred CeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChh
Q 000790 874 GIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTES 930 (1283)
Q Consensus 874 ~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~ 930 (1283)
+.++.|- +|+. -.-.++..|-.||+||-+ +..|+.+|...
T Consensus 551 nATvMVI--------e~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 551 NATVMVI--------ENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred CCeEEEE--------echh---------hhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 9999875 6652 345678999999999988 69999999754
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=5e-21 Score=234.45 Aligned_cols=329 Identities=20% Similarity=0.233 Sum_probs=224.2
Q ss_pred cCCCHHHHHHHH--HHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 584 YLPIFSVRDELL--QVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 584 ~LPi~~~Q~eil--~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
.+-.|.+|.+.+ +.+++++++|...||+.|||+++.+.++...+.....++.+.|.-..+..-...+ .-+.+.+|..
T Consensus 221 i~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l-~~~~~~~G~~ 299 (1008)
T KOG0950|consen 221 ILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISAL-SPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhh-hhhccccCCc
Confidence 344678998876 4678999999999999999999988888877766667888888877776666655 3344556654
Q ss_pred e-eEEEeeeecc-CCCceEEEechhH---HHHHHccCCCCCCCceEEEcCCCc-----CCcchhHHHHHHHHHHHh--cC
Q 000790 662 V-GYAIRFEDVT-GPSTLIKYMTDGV---LLRETLKDSDLDKYRVIVMDEAHE-----RSLSTDVLFGILKKVVAR--RR 729 (1283)
Q Consensus 662 V-Gy~ir~e~~~-s~~t~I~~~T~G~---LLr~ll~d~~L~~~s~IIIDEaHE-----Rsl~tD~ll~lLk~il~~--r~ 729 (1283)
| +|.-++.... -....+.+||.++ |.+.++....+..+++|||||.|. |+... ..+|.+++.. ..
T Consensus 300 ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l---E~~l~k~~y~~~~~ 376 (1008)
T KOG0950|consen 300 VEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL---ELLLAKILYENLET 376 (1008)
T ss_pred chhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH---HHHHHHHHHhcccc
Confidence 4 3442222221 2346788899764 667777777889999999999994 44333 3344444432 23
Q ss_pred CceEEEeccCc-CHHHHHHHhCCCCeEeecCcccceeeeecCCCh-hhH-HHHHHHHHHH-----------------Hhh
Q 000790 730 DFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPC-EDY-VEAAVKQAMT-----------------IHI 789 (1283)
Q Consensus 730 dlklIlmSATl-d~e~fa~~f~~~pvi~i~gr~~pV~i~y~~~~~-~dy-v~~~v~~~l~-----------------i~~ 789 (1283)
.+++|+||||+ |...++.||. +.++.-.-|..|...+...... .+. -...+..+-. ...
T Consensus 377 ~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~te 455 (1008)
T KOG0950|consen 377 SVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTE 455 (1008)
T ss_pred ceeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhh
Confidence 47899999999 8999999997 3333333333333322211000 000 0000111100 000
Q ss_pred cCC-CCCEEEEcCCHHHHHHHHHHHHHHHHHhhcc-------------------------ccCCCCCeEEEEecCCCCHH
Q 000790 790 TSP-PGDILIFMTGQDEIEAACFALKERMEQLISS-------------------------TTREVPELLILPIYSQLPAD 843 (1283)
Q Consensus 790 ~~~-~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~-------------------------~~~~~~~l~Il~LHs~L~~~ 843 (1283)
.-+ +..+|||||++..|+.++..+...+.+.... .....-.+.+.++|+|++.+
T Consensus 456 t~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~e 535 (1008)
T KOG0950|consen 456 TAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSE 535 (1008)
T ss_pred hhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccc
Confidence 112 3459999999999999987776544321100 01112346788999999999
Q ss_pred HHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---C
Q 000790 844 LQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---P 920 (1283)
Q Consensus 844 er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~ 920 (1283)
+|..|...|+.|...|++||++++.|+++|..+|+|-.-+ .|. ...+..+|.||+|||||+| -
T Consensus 536 ER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~---------~g~-----~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 536 EREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY---------VGR-----EFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred hHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc---------ccc-----chhhhhhHHhhhhhhhhcccccC
Confidence 9999999999999999999999999999999999995433 222 4678899999999999999 4
Q ss_pred CEEEEecChhh
Q 000790 921 GTCYRLYTESA 931 (1283)
Q Consensus 921 G~cyrLyt~~~ 931 (1283)
|.++.++.+..
T Consensus 602 GdsiLI~k~~e 612 (1008)
T KOG0950|consen 602 GDSILIIKSSE 612 (1008)
T ss_pred cceEEEeeccc
Confidence 99999998654
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.86 E-value=3.3e-20 Score=223.43 Aligned_cols=290 Identities=20% Similarity=0.212 Sum_probs=196.1
Q ss_pred HhcCCCHHHHHHHHHHHHh----CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 582 RQYLPIFSVRDELLQVIRE----NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~----~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
.....+.++|+++++++.. ++..+|+.|||+|||..+...+.... ..++|++|+++|+.|.++++...++..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 3455678999999999998 89999999999999999877666542 239999999999999998886655543
Q ss_pred cCCeeeEEEeeeeccCCCceEEEechhHHHHH-HccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCce-EEE
Q 000790 658 LGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRE-TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK-LIV 735 (1283)
Q Consensus 658 lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~-ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlk-lIl 735 (1283)
..+|..-.......+ ..|.|.|...+.+. .+.......+++||+||||+-.... ...++..+ .... +++
T Consensus 108 --~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~--~~~~~~~~----~~~~~~LG 178 (442)
T COG1061 108 --DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--YRRILELL----SAAYPRLG 178 (442)
T ss_pred --cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH--HHHHHHhh----hcccceee
Confidence 223321111111112 56999999999886 3444445579999999999533222 22222222 2334 999
Q ss_pred eccCc---C---HHHHHHHhCCCCeEeec-------CcccceeeeecCC-----ChhhHHH-------------------
Q 000790 736 TSATL---N---AQKFSDFFGSVPIFHIP-------GRTFPVNTLYSKT-----PCEDYVE------------------- 778 (1283)
Q Consensus 736 mSATl---d---~e~fa~~f~~~pvi~i~-------gr~~pV~i~y~~~-----~~~dyv~------------------- 778 (1283)
||||+ | ...+..++| ..++.+. |..-|........ ....|..
T Consensus 179 LTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 99997 3 233344443 1122222 3233322221111 0000000
Q ss_pred -------------HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHH
Q 000790 779 -------------AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQ 845 (1283)
Q Consensus 779 -------------~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er 845 (1283)
..+..++..|. ...++|||+.....+..++..+.. ++. +..+.+..+..+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~-------------~~~-~~~it~~t~~~eR 321 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLA-------------PGI-VEAITGETPKEER 321 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcC-------------CCc-eEEEECCCCHHHH
Confidence 00111111121 356899999999999988876632 233 7889999999999
Q ss_pred HHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC
Q 000790 846 AKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG 919 (1283)
Q Consensus 846 ~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g 919 (1283)
..+++.|+.|.+++||++.++..|+|+|++.++|-.. ..-|...|.||+||.=|..
T Consensus 322 ~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~------------------~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 322 EAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR------------------PTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred HHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC------------------CCCcHHHHHHHhhhhccCC
Confidence 9999999999999999999999999999999999522 3678899999999999954
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=1.3e-19 Score=236.20 Aligned_cols=315 Identities=19% Similarity=0.278 Sum_probs=200.0
Q ss_pred CCCHHHHHHHHHHHH-----hCCeEEEEccCCCChHHHHHHHHHHhcc-cCCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 585 LPIFSVRDELLQVIR-----ENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~-----~~qvvII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
+.+.++|.+++..+. .++.++|+++||||||..+...+..... ....+|++++||.+|+.|....+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 346789999987775 2467899999999999775544333211 12358999999999999999888542 2211
Q ss_pred CCeee--EEEe--eeeccCCCceEEEechhHHHHHHccC------CCCCCCceEEEcCCCcCCcchhH------------
Q 000790 659 GDKVG--YAIR--FEDVTGPSTLIKYMTDGVLLRETLKD------SDLDKYRVIVMDEAHERSLSTDV------------ 716 (1283)
Q Consensus 659 G~~VG--y~ir--~e~~~s~~t~I~~~T~G~LLr~ll~d------~~L~~~s~IIIDEaHERsl~tD~------------ 716 (1283)
+..+. |.+. .+......+.|+|+|...|.+.+... +.+..+++||||||| |+...|-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 11110 1111 11112345889999999887765321 347889999999999 7753211
Q ss_pred --HHHHHHHHHHhcCCceEEEeccCcCHHHHHHHhCCCCeEeec-------Cccc----ceeee---------ecCC---
Q 000790 717 --LFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIP-------GRTF----PVNTL---------YSKT--- 771 (1283)
Q Consensus 717 --ll~lLk~il~~r~dlklIlmSATld~e~fa~~f~~~pvi~i~-------gr~~----pV~i~---------y~~~--- 771 (1283)
.....+.++.. .+..+|+||||+... ...+||. |++... |-.. |+.+. |...
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 12345555553 356789999999532 3456663 443211 2221 11110 0000
Q ss_pred --------C-----hh---hHHH--------------HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhh
Q 000790 772 --------P-----CE---DYVE--------------AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLI 821 (1283)
Q Consensus 772 --------~-----~~---dyv~--------------~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~ 821 (1283)
. .. .|.. ..+..++.......++++||||.++.+++.++..|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0 00 0000 0111112111122358999999999999999998877553321
Q ss_pred ccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCe-eEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccc
Q 000790 822 SSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR-KCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQV 900 (1283)
Q Consensus 822 ~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~r-KVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~ 900 (1283)
.......+..+||..+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||. +.
T Consensus 727 ----~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~r---------- 782 (1123)
T PRK11448 727 ----GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LR---------- 782 (1123)
T ss_pred ----CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ec----------
Confidence 1122335666888875 45679999998876 79999999999999999999995 44
Q ss_pred cccCHHHHHHHhcccCCCCC--CE-EEEecC
Q 000790 901 FPVSRAAADQRAGRAGRTGP--GT-CYRLYT 928 (1283)
Q Consensus 901 ~PiS~as~~QRaGRAGR~g~--G~-cyrLyt 928 (1283)
.+.|...|+||+||+.|..+ |+ +|.+|.
T Consensus 783 pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 783 RVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred CCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 46899999999999999987 43 455554
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=1.8e-19 Score=227.40 Aligned_cols=297 Identities=19% Similarity=0.228 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHhC------CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 589 SVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 589 ~~Q~eil~~I~~~------qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
+=|..+|+.|... -+=+|||.-|-|||.+++-..+..... +++|.|++||-+||.|-++.+.+.|. .++..|
T Consensus 597 ~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I 674 (1139)
T COG1197 597 PDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-GKQVAVLVPTTLLAQQHYETFKERFA-GFPVRI 674 (1139)
T ss_pred HHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeE
Confidence 5566667766542 355999999999999998877776544 67899999999999999999977664 566677
Q ss_pred eEEEeeeec----------cCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCce
Q 000790 663 GYAIRFEDV----------TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 732 (1283)
Q Consensus 663 Gy~ir~e~~----------~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlk 732 (1283)
+.--||... ......|++.|...| ..+..+.++++|||||-|..++..- .++-..+.++-
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk~K------EkLK~Lr~~VD 744 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVKHK------EKLKELRANVD 744 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcCccHH------HHHHHHhccCc
Confidence 777777652 245778999998655 4566789999999999996555442 22233467899
Q ss_pred EEEeccCcCHHHHHHHhCCC---CeE-eecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHH
Q 000790 733 LIVTSATLNAQKFSDFFGSV---PIF-HIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEA 808 (1283)
Q Consensus 733 lIlmSATld~e~fa~~f~~~---pvi-~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~ 808 (1283)
++-||||+=+..+.--+.+. .++ +-|...+||..+..+... ..+..++. -. ...+|++-...|..++|+.
T Consensus 745 vLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~-~~ireAI~----RE-l~RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 745 VLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD-LLIREAIL----RE-LLRGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCCh-HHHHHHHH----HH-HhcCCEEEEEecchhhHHH
Confidence 99999999554444333332 233 334566888887665432 22222222 21 2347898888999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCcccee
Q 000790 809 ACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV 888 (1283)
Q Consensus 809 l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~ 888 (1283)
++..|.+. .|...|...||+|+..+-+.|+..|-+|...|||||.|.|+|||||+++.+|-
T Consensus 819 ~~~~L~~L-----------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII-------- 879 (1139)
T COG1197 819 KAERLREL-----------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII-------- 879 (1139)
T ss_pred HHHHHHHh-----------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------
Confidence 99998765 47899999999999999999999999999999999999999999999998874
Q ss_pred ccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhh
Q 000790 889 YNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 889 yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 931 (1283)
.+.. -.-.++..|-.||+||... ++||.||....
T Consensus 880 e~AD---------~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 880 ERAD---------KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred eccc---------cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 3321 2345789999999999985 99999998654
No 99
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.83 E-value=3.9e-19 Score=197.69 Aligned_cols=314 Identities=18% Similarity=0.200 Sum_probs=212.3
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 576 KTLAEQRQYL-PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 576 ~~l~~~R~~L-Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
+.|++..-.| ...|.|.+.|++.+.+.+++++.|||.||++++.++.+-. .+..+|+.|...|.....-.+ +.+
T Consensus 83 ~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----dg~alvi~plislmedqil~l-kql 157 (695)
T KOG0353|consen 83 KDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----DGFALVICPLISLMEDQILQL-KQL 157 (695)
T ss_pred HHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----CCceEeechhHHHHHHHHHHH-HHh
Confidence 3444433333 2347899999999999999999999999999987776543 567888889999987665555 333
Q ss_pred ccccCCeeeEE-----Eeeee-cc--CCCceEEEechhHHHHH------HccCCCCCCCceEEEcCCCc-----CCcchh
Q 000790 655 DTELGDKVGYA-----IRFED-VT--GPSTLIKYMTDGVLLRE------TLKDSDLDKYRVIVMDEAHE-----RSLSTD 715 (1283)
Q Consensus 655 ~~~lG~~VGy~-----ir~e~-~~--s~~t~I~~~T~G~LLr~------ll~d~~L~~~s~IIIDEaHE-----Rsl~tD 715 (1283)
|......-.-. -+.+. .+ ...-+++|+||+.+... +-.......+.+|-|||+|+ ..+..|
T Consensus 158 gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~d 237 (695)
T KOG0353|consen 158 GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPD 237 (695)
T ss_pred CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcc
Confidence 32211000000 00011 11 23467899999976542 22223356688999999997 334444
Q ss_pred H-HHHHHHHHHHhcCCceEEEeccCcCH---HHHHHHhCCCCeEeec-Ccccc---eeeeecCCChhhHHHHHHHHHHHH
Q 000790 716 V-LFGILKKVVARRRDFKLIVTSATLNA---QKFSDFFGSVPIFHIP-GRTFP---VNTLYSKTPCEDYVEAAVKQAMTI 787 (1283)
Q Consensus 716 ~-ll~lLk~il~~r~dlklIlmSATld~---e~fa~~f~~~pvi~i~-gr~~p---V~i~y~~~~~~dyv~~~v~~~l~i 787 (1283)
+ .+++|++ ..++..||+++||... +...+.++-...+.+. |...| .++...+....+.++...+.+
T Consensus 238 y~~l~ilkr---qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i--- 311 (695)
T KOG0353|consen 238 YKALGILKR---QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLI--- 311 (695)
T ss_pred hHHHHHHHH---hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHh---
Confidence 3 4455554 5789999999999832 2333333211111111 11111 122222333445555444332
Q ss_pred hhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCccc
Q 000790 788 HITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAE 867 (1283)
Q Consensus 788 ~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAE 867 (1283)
.-...+..-||||-++++++.++..|+. .++....+|+.|.++++.-+-+.+..|++.|||||-...
T Consensus 312 ~~~f~gqsgiiyc~sq~d~ekva~alkn-------------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 312 KGDFAGQSGIIYCFSQKDCEKVAKALKN-------------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ccccCCCcceEEEeccccHHHHHHHHHh-------------cCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 2223355679999999999999998875 378888999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHH-------------------------------------
Q 000790 868 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQ------------------------------------- 910 (1283)
Q Consensus 868 tGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~Q------------------------------------- 910 (1283)
+|||-|+|++||+-. .|.|.++|.|
T Consensus 379 mgidkpdvrfvihhs------------------l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiff 440 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHS------------------LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFF 440 (695)
T ss_pred ccCCCCCeeEEEecc------------------cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeee
Confidence 999999999999833 5888888888
Q ss_pred ------HhcccCCCC-CCEEEEecChhh
Q 000790 911 ------RAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 911 ------RaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
..|||||.+ +..|+..|.-.+
T Consensus 441 avfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 441 AVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred eeecchhccccccCCCcccEEEEechHH
Confidence 789999998 688988886443
No 100
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.81 E-value=7.9e-22 Score=236.99 Aligned_cols=448 Identities=8% Similarity=-0.173 Sum_probs=349.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC----CEEEEecchHHHHHHHHHHHHHHh
Q 000790 579 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN----GIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 579 ~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~----~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
+..+.-+|+..+-+.||+++.+|.++++-+.||||||++.+++|++...... +.++.++||++.|...+.+++-+.
T Consensus 399 ~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fc 478 (1282)
T KOG0921|consen 399 KGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFC 478 (1282)
T ss_pred eecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeee
Confidence 3456678999999999999999999999999999999999999999765532 468889999999999999988777
Q ss_pred ccccCCeeeEEEeeeec-cCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceE
Q 000790 655 DTELGDKVGYAIRFEDV-TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 655 ~~~lG~~VGy~ir~e~~-~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlkl 733 (1283)
++.++...+|..+++.. ...+..+.++|++.|++.++.+ +....+.|.||.|+++++||++..++..+ +.+
T Consensus 479 tvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~ 550 (1282)
T KOG0921|consen 479 TVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDV 550 (1282)
T ss_pred ccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cce
Confidence 77788888888777653 3456777899999999887765 66778899999999999999999988775 345
Q ss_pred EEeccCcCHHHHHHHhCCCCeEeecCcccceeeeec------------------------C------------CChhhHH
Q 000790 734 IVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYS------------------------K------------TPCEDYV 777 (1283)
Q Consensus 734 IlmSATld~e~fa~~f~~~pvi~i~gr~~pV~i~y~------------------------~------------~~~~dyv 777 (1283)
+++++|+++..|..++-.+++..++++.++++..+. . ......+
T Consensus 551 ~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~ 630 (1282)
T KOG0921|consen 551 TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLI 630 (1282)
T ss_pred eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHH
Confidence 999999999999999888999999988877654321 0 0112344
Q ss_pred HHHHHHHHH------HhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhH
Q 000790 778 EAAVKQAMT------IHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEK 851 (1283)
Q Consensus 778 ~~~v~~~l~------i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~ 851 (1283)
++.+..+.. +....+++..|+|++++.-+......+..+ + .-......+.+.|..++..++..+++.
T Consensus 631 Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~------ilp~Hsq~~~~eqrkvf~~~p~gv~ki 703 (1282)
T KOG0921|consen 631 EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-E------ILPLHSQLTSQEQRKVFEPVPEGVTKI 703 (1282)
T ss_pred HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-c------cccchhhcccHhhhhccCccccccccc
Confidence 444443332 223457899999999998887777666442 1 122346678899999999999999999
Q ss_pred hcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhh
Q 000790 852 AKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESA 931 (1283)
Q Consensus 852 f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~ 931 (1283)
...+.++++..|++.++.|.+..+.+|++++-.+.+.+-....++...+.+.+...-.||.|+|++...+.||.++....
T Consensus 704 i~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~ 783 (1282)
T KOG0921|consen 704 ILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHG 783 (1282)
T ss_pred ccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998888877788888888999999999999999999999999999887
Q ss_pred hhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCC--CCCCCChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCC
Q 000790 932 YLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFD--FMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPL 1009 (1283)
Q Consensus 932 ~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~--fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPl 1009 (1283)
+ .+|..++.+||.++.+...++.++.+-.+.+..++ .+.+|+......+...+...-+.+..-.+|.+++.....|+
T Consensus 784 t-~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~ 862 (1282)
T KOG0921|consen 784 T-AEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMM 862 (1282)
T ss_pred c-HhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCccccccee
Confidence 7 56889999999998887777666655444455543 45666655554444444444444434467899999999999
Q ss_pred ChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcc
Q 000790 1010 DPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVF 1042 (1283)
Q Consensus 1010 dp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f 1042 (1283)
.|..+++.+.++.+-..+.+.++.++-..+..|
T Consensus 863 ~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~ 895 (1282)
T KOG0921|consen 863 ILGTALGAGSVMCDVASAMSFPTPFVPREKHHS 895 (1282)
T ss_pred eechhhccchhhhhhhccccccccccccccccc
Confidence 999999888776554444444444443334433
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=4.4e-18 Score=212.94 Aligned_cols=127 Identities=15% Similarity=0.040 Sum_probs=96.2
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 581 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 581 ~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
.++.|-+.++--+++-.+.=++--|..++||+|||+++.++++...+. +..+.|+.|++.||.|.++.+.. +...+|.
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-G~~V~VvTpn~yLA~qd~e~m~~-l~~~lGL 152 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-GRGVHIVTVNDYLAKRDSQWMKP-IYEFLGL 152 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHH-HhcccCc
Confidence 456777777777788877667777999999999999999988876654 34588889999999999998854 4456788
Q ss_pred eeeEEEeeeec----cCCCceEEEechhHH-HHHHccCCC-------CCCCceEEEcCCCc
Q 000790 661 KVGYAIRFEDV----TGPSTLIKYMTDGVL-LRETLKDSD-------LDKYRVIVMDEAHE 709 (1283)
Q Consensus 661 ~VGy~ir~e~~----~s~~t~I~~~T~G~L-Lr~ll~d~~-------L~~~s~IIIDEaHE 709 (1283)
.||+.+...+. ..-.+.|+|+|+|.| +..+..+.. ...+.++||||||.
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 88876554321 112578999999999 665544322 25899999999993
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.80 E-value=6e-18 Score=216.70 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=192.7
Q ss_pred CCHHHHHHHHHHHHh--CCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 586 PIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~--~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
-++++|..++..+.. ...+||.-+.|.|||.++..++.+..... ..+|+|++|. .|..|....+...++.... .+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~-i~ 229 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFS-LF 229 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeE-EE
Confidence 356899888877643 34689999999999999877665543332 2579999997 6777877777655553211 00
Q ss_pred eE----EEeeee-ccCCCceEEEechhHHHHH--HccCCCCCCCceEEEcCCCcCCc---chhHHHHHHHHHHHhcCCce
Q 000790 663 GY----AIRFED-VTGPSTLIKYMTDGVLLRE--TLKDSDLDKYRVIVMDEAHERSL---STDVLFGILKKVVARRRDFK 732 (1283)
Q Consensus 663 Gy----~ir~e~-~~s~~t~I~~~T~G~LLr~--ll~d~~L~~~s~IIIDEaHERsl---~tD~ll~lLk~il~~r~dlk 732 (1283)
+. ...... ..-....+++++.+.|.+. ......-..+++|||||||.-.. ...-....++.+... -..
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~--~~~ 307 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV--IPG 307 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc--cCC
Confidence 00 000000 1112456888988887651 11111124789999999995211 112234455554332 236
Q ss_pred EEEeccCcC---HH-HHHH--------------H-----------------hCCCCeEe---------ec----------
Q 000790 733 LIVTSATLN---AQ-KFSD--------------F-----------------FGSVPIFH---------IP---------- 758 (1283)
Q Consensus 733 lIlmSATld---~e-~fa~--------------~-----------------f~~~pvi~---------i~---------- 758 (1283)
++++|||+- .+ .|+. | +.+.++.. ++
T Consensus 308 ~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~ 387 (956)
T PRK04914 308 VLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQA 387 (956)
T ss_pred EEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhh
Confidence 899999992 22 1110 1 00110000 00
Q ss_pred -------------------------C-----------cccceeeeec-CC-ChhhHHHH---------------------
Q 000790 759 -------------------------G-----------RTFPVNTLYS-KT-PCEDYVEA--------------------- 779 (1283)
Q Consensus 759 -------------------------g-----------r~~pV~i~y~-~~-~~~dyv~~--------------------- 779 (1283)
| ..||...... +. ....|...
T Consensus 388 ~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~ 467 (956)
T PRK04914 388 ANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQE 467 (956)
T ss_pred hcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHH
Confidence 0 0011100000 00 01122111
Q ss_pred ------------HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHH
Q 000790 780 ------------AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAK 847 (1283)
Q Consensus 780 ------------~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~ 847 (1283)
.+..++.+.......++||||.++..+..+...|... .++.+..+||+|+..+|.+
T Consensus 468 ~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------------~Gi~~~~ihG~~s~~eR~~ 535 (956)
T PRK04914 468 FEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------------EGIRAAVFHEGMSIIERDR 535 (956)
T ss_pred HhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------------cCeeEEEEECCCCHHHHHH
Confidence 0111122222234678999999999999998888532 3788999999999999999
Q ss_pred HHhHhcC--CCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-C--E
Q 000790 848 IFEKAKE--GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-G--T 922 (1283)
Q Consensus 848 I~~~f~~--G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G--~ 922 (1283)
+++.|.. |...|||||+++++|+|++.+.+||+ || .|.++..|.||+||+||.|. | .
T Consensus 536 ~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~ 597 (956)
T PRK04914 536 AAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQ 597 (956)
T ss_pred HHHHHhcCCCCccEEEechhhccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEE
Confidence 9999987 46999999999999999999999999 88 79999999999999999984 3 4
Q ss_pred EEEecChh
Q 000790 923 CYRLYTES 930 (1283)
Q Consensus 923 cyrLyt~~ 930 (1283)
+|.+|.+.
T Consensus 598 i~~~~~~~ 605 (956)
T PRK04914 598 IHVPYLEG 605 (956)
T ss_pred EEEccCCC
Confidence 55555543
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=7.7e-18 Score=214.14 Aligned_cols=304 Identities=19% Similarity=0.177 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHHHh---CC-eEEEEccCCCChHHHHHHHHHHhccc---CCCEEEEecchHHHHHHHHHHHHHHhccc--
Q 000790 587 IFSVRDELLQVIRE---NQ-VVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRVSEEMDTE-- 657 (1283)
Q Consensus 587 i~~~Q~eil~~I~~---~q-vvII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~LA~qvakrVa~e~~~~-- 657 (1283)
.++.|..++..+.. .. .+++.||||+|||++.+.+.+..... ...+++++.|++.++.++++++....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 34666666666643 34 89999999999999977766554333 35789999999999999999997655422
Q ss_pred cCC-eeeEEE----eee------eccCC-------CceEEEechhHHHHHHccCCCC-----CCCceEEEcCCCcCCcch
Q 000790 658 LGD-KVGYAI----RFE------DVTGP-------STLIKYMTDGVLLRETLKDSDL-----DKYRVIVMDEAHERSLST 714 (1283)
Q Consensus 658 lG~-~VGy~i----r~e------~~~s~-------~t~I~~~T~G~LLr~ll~d~~L-----~~~s~IIIDEaHERsl~t 714 (1283)
.+. ..|... ... ..+.. -..++++|..++. ....-... --.++||+||+|-..-.+
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILI-FSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhh-hhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 111 111100 000 00000 0112222222222 11111111 124789999999544442
Q ss_pred --hHHHHHHHHHHHhcCCceEEEeccCcCH---HHHHHHhCCCCeEeecCcccceeeee-c-CCChhhHHHH--HHHHHH
Q 000790 715 --DVLFGILKKVVARRRDFKLIVTSATLNA---QKFSDFFGSVPIFHIPGRTFPVNTLY-S-KTPCEDYVEA--AVKQAM 785 (1283)
Q Consensus 715 --D~ll~lLk~il~~r~dlklIlmSATld~---e~fa~~f~~~pvi~i~gr~~pV~i~y-~-~~~~~dyv~~--~v~~~l 785 (1283)
-++++++..+ ..-+.++|+||||++. +.|..+++....+.......+....+ . .....+.... ......
T Consensus 355 ~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 355 MLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred hHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 2333333333 2347899999999963 45556655433322221111111100 0 0001111111 011112
Q ss_pred HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHh----cCCCeeEEE
Q 000790 786 TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKA----KEGTRKCIV 861 (1283)
Q Consensus 786 ~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f----~~G~rKVLV 861 (1283)
.......++++||-|||...+..++..|++. .. .++.+||.+...+|...+..+ ..+...|||
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~------------~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvV 499 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEK------------GP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVV 499 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhc------------CC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEE
Confidence 2223345789999999999999999988763 12 799999999999999887743 456889999
Q ss_pred ecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC--C-CEEEEec
Q 000790 862 ATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG--P-GTCYRLY 927 (1283)
Q Consensus 862 ATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g--~-G~cyrLy 927 (1283)
||.+.|.||||+ .+++| +.+....+.+||+||++|.| . |..|..-
T Consensus 500 aTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 500 ATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred EeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEee
Confidence 999999999999 66666 35777889999999999999 3 5555443
No 104
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.77 E-value=1.2e-19 Score=179.09 Aligned_cols=101 Identities=38% Similarity=0.760 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCCCCCC-------------CCChHHHHHHHHhcccchhhhhcccceeeeecCCcceeeCCCCcccCCCC
Q 000790 1104 SQLLDILKTLKIPLTSS-------------GHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGY 1170 (1283)
Q Consensus 1104 ~qL~~~l~~~~~~~~s~-------------~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~ 1170 (1283)
+||.++|+++|+...+. ..+++.|++|||+|||+|||++.+.|.|.++.++..|+|||+|+|++ .
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~--~ 78 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFK--K 78 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTT--T
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccc--c
Confidence 58999999998854332 03568999999999999999988889999998888999999999976 6
Q ss_pred CCCceeeehhhcchhhhhhhccccCHHHHHhhCCcc
Q 000790 1171 TPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMF 1206 (1283)
Q Consensus 1171 ~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~~p~~ 1206 (1283)
.|+||||+|++.|+|.||++||+|+|.||.++||+|
T Consensus 79 ~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 79 PPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp T-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 799999999999999999999999999999999986
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.6e-17 Score=205.31 Aligned_cols=108 Identities=22% Similarity=0.265 Sum_probs=93.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccC
Q 000790 791 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSL 870 (1283)
Q Consensus 791 ~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGI 870 (1283)
..+.+|||||++...++.++..|.+. ++....||+.+...+...|...+.+|. |+||||+|++|+
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~-------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGt 502 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA-------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGT 502 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC-------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCC
Confidence 35788999999999999999888753 677789999999888888888777766 999999999999
Q ss_pred CC---CCee-----EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhh
Q 000790 871 TV---DGIF-----YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 931 (1283)
Q Consensus 871 dI---p~V~-----~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 931 (1283)
|| ++|. +||+ |+ .|.|...+.|+.|||||.| ||.+..+++.++
T Consensus 503 DI~l~~~V~~~GGLhVI~--------te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIG--------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCCCCcchhhhCCcEEEe--------ee----------cCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99 4899 9998 44 6999999999999999999 699988888654
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=5.3e-17 Score=203.25 Aligned_cols=317 Identities=17% Similarity=0.165 Sum_probs=191.1
Q ss_pred HhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 582 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
++.|-++++--+++-.|.=++--|..+.||+|||+++.++++-..+. +..|-|+.|+..||.+.++.+.. +...+|..
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~IvTpn~yLA~rd~e~~~~-l~~~LGls 152 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHVVTVNDYLAKRDAEWMGP-LYEFLGLS 152 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHH-HHhhcCCe
Confidence 34454545545566665545556999999999999988888644343 33466888999999999998854 44567888
Q ss_pred eeEEEeeeecc----CCCceEEEechhHH-HHHHccCC-------CCCCCceEEEcCCCc------CCc--------chh
Q 000790 662 VGYAIRFEDVT----GPSTLIKYMTDGVL-LRETLKDS-------DLDKYRVIVMDEAHE------RSL--------STD 715 (1283)
Q Consensus 662 VGy~ir~e~~~----s~~t~I~~~T~G~L-Lr~ll~d~-------~L~~~s~IIIDEaHE------Rsl--------~tD 715 (1283)
||..+...+.. .-.+.|+|+|++.| +..+.... .+..+.++|||||+. |+. ...
T Consensus 153 v~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~ 232 (830)
T PRK12904 153 VGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSS 232 (830)
T ss_pred EEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCccc
Confidence 88765533211 12478999999999 55553322 267889999999993 111 001
Q ss_pred HHHHHHHHHHHh-cC--------CceEEEe--------------------------------------------------
Q 000790 716 VLFGILKKVVAR-RR--------DFKLIVT-------------------------------------------------- 736 (1283)
Q Consensus 716 ~ll~lLk~il~~-r~--------dlklIlm-------------------------------------------------- 736 (1283)
.+...+..+... .. .-+.|.+
T Consensus 233 ~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 233 ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 122222222221 11 1122222
Q ss_pred -----------------------------------------------------------ccCc--CHHHHHHHhCCCCeE
Q 000790 737 -----------------------------------------------------------SATL--NAQKFSDFFGSVPIF 755 (1283)
Q Consensus 737 -----------------------------------------------------------SATl--d~e~fa~~f~~~pvi 755 (1283)
|.|. ..+.|.+.++ ..++
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~-l~vv 391 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN-LDVV 391 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC-CCEE
Confidence 2222 1111111111 1222
Q ss_pred eecCcccceeeeecCC----ChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCe
Q 000790 756 HIPGRTFPVNTLYSKT----PCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPEL 831 (1283)
Q Consensus 756 ~i~gr~~pV~i~y~~~----~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l 831 (1283)
.||... |+.-.-.+. ...+...+.+..+...| ..+.+|||||++.+.++.++..|.+. ++
T Consensus 392 ~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~-------------gi 455 (830)
T PRK12904 392 VIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA-------------GI 455 (830)
T ss_pred EcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-------------CC
Confidence 222111 100000000 01122233333333333 34678999999999999999988753 67
Q ss_pred EEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCe------------------------------eEEEEc
Q 000790 832 LILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI------------------------------FYVIDT 881 (1283)
Q Consensus 832 ~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V------------------------------~~VIDs 881 (1283)
.+..||+. +.+|...+..|..+...|+||||+|++|+||+== .-|..
T Consensus 456 ~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 532 (830)
T PRK12904 456 PHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE- 532 (830)
T ss_pred ceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH-
Confidence 78889995 7788999999999999999999999999999821 01111
Q ss_pred CCccceeccCCCCcccccc-cccCHHHHHHHhcccCCCC-CCEEEEecChh
Q 000790 882 GYGKMKVYNPKMGMDALQV-FPVSRAAADQRAGRAGRTG-PGTCYRLYTES 930 (1283)
Q Consensus 882 Gl~K~~~yD~~~g~~~L~~-~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~ 930 (1283)
.-|+..+.+ .+-|.--=.|-.|||||.| ||.+-.+.+-+
T Consensus 533 ----------~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 533 ----------AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred ----------cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 123333333 3667777789999999999 68877666644
No 107
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=3.1e-17 Score=175.76 Aligned_cols=273 Identities=19% Similarity=0.224 Sum_probs=174.8
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCC--EEEEecchHHHHHHHHHHH---HHHhccccCC
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG--IVGCTQPRRVAAMSVAKRV---SEEMDTELGD 660 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~--~Il~tqPrR~LA~qvakrV---a~e~~~~lG~ 660 (1283)
-...+|.++|+...-+-+|+..|..|-|||.++.+..+...-...+ .++|+..+|+||-|+.+.. ++.|. +.
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP---~v 140 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP---SV 140 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC---Cc
Confidence 3457899999888889999999999999999988887776554444 5788899999999997655 33332 22
Q ss_pred eee--E---EEeeee-ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceE
Q 000790 661 KVG--Y---AIRFED-VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 661 ~VG--y---~ir~e~-~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlkl 733 (1283)
.|. | .|.-+. ......+|++.|||.++....+. ..|.++.++|||||+.-.-..|....+-........+-++
T Consensus 141 kvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQv 220 (387)
T KOG0329|consen 141 KVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQV 220 (387)
T ss_pred eEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCccccee
Confidence 221 1 121111 11235689999999998876654 4599999999999994222233322222222223456789
Q ss_pred EEeccCc--CHHHHHHHhCCCCeEeecCcc-----cceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH
Q 000790 734 IVTSATL--NAQKFSDFFGSVPIFHIPGRT-----FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEI 806 (1283)
Q Consensus 734 IlmSATl--d~e~fa~~f~~~pvi~i~gr~-----~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eI 806 (1283)
+.+|||+ +..-+...|...|+-..-... +-+..+|.+..... -...+..++. ...-.+++||+.+...
T Consensus 221 mmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd---~LeFNQVvIFvKsv~R- 295 (387)
T KOG0329|consen 221 MMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLD---VLEFNQVVIFVKSVQR- 295 (387)
T ss_pred eeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhh---hhhhcceeEeeehhhh-
Confidence 9999999 455566655544431111110 11222222211100 0011111111 1123557777644321
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccc
Q 000790 807 EAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKM 886 (1283)
Q Consensus 807 e~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~ 886 (1283)
.. | .++ +|||++..+|+||..|+.|||
T Consensus 296 ----------------------------------------l~---f--~kr--~vat~lfgrgmdiervNi~~N------ 322 (387)
T KOG0329|consen 296 ----------------------------------------LS---F--QKR--LVATDLFGRGMDIERVNIVFN------ 322 (387)
T ss_pred ----------------------------------------hh---h--hhh--hHHhhhhccccCcccceeeec------
Confidence 00 2 123 899999999999999999999
Q ss_pred eeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecChhh
Q 000790 887 KVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 931 (1283)
Q Consensus 887 ~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 931 (1283)
|| .|-+..+|+||.|||||.|. |.++.+.+.+.
T Consensus 323 --Yd----------mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 323 --YD----------MPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred --cC----------CCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 88 79999999999999999994 99999887544
No 108
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=191.24 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHhccc-c--C
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTE-L--G 659 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~~~~-l--G 659 (1283)
+-...+|.+.+..+-.+..++|+|||.+|||.+- .|..+..+. ..+.|+++.|+++|+.|++..|...+... + |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 4556899999999999999999999999999764 445555444 35689999999999999998887766322 1 1
Q ss_pred Ce-eeEEEeeeeccCCCceEEEechhHHHHHHccCC----CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEE
Q 000790 660 DK-VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDS----DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLI 734 (1283)
Q Consensus 660 ~~-VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~----~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklI 734 (1283)
.. .|--.+......-+++|+|+-|..|--.|++.| ...++.+||+||+|.-+-.-|- ++...+-..-.+.+|
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~---l~~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG---LLWEQLLLLIPCPFL 665 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccc---hHHHHHHHhcCCCee
Confidence 11 110011111122378999999998877776643 4788999999999964443332 222222222357899
Q ss_pred EeccCc-CHHHHHHHhC
Q 000790 735 VTSATL-NAQKFSDFFG 750 (1283)
Q Consensus 735 lmSATl-d~e~fa~~f~ 750 (1283)
++|||+ |++.|..|+.
T Consensus 666 ~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLN 682 (1330)
T ss_pred EEecccCCHHHHHHHHH
Confidence 999999 8999999986
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.1e-15 Score=191.24 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=90.9
Q ss_pred HhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 582 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
|+.|-+.++--+++-.+.=++--|..++||.|||+++.++++...+... .|.|+.|++.||.+.++.+...+. .+|..
T Consensus 76 ~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~-~VhIvT~ndyLA~RD~e~m~~l~~-~lGls 153 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK-GVHVITVNDYLARRDAENNRPLFE-FLGLT 153 (908)
T ss_pred HHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHHHHHHH-hcCCe
Confidence 3455555555557777766777799999999999999988887766543 478888999999999988865544 47888
Q ss_pred eeEEEeeeecc----CCCceEEEechhHH-HHHHccC-------CCCCCCceEEEcCCCc
Q 000790 662 VGYAIRFEDVT----GPSTLIKYMTDGVL-LRETLKD-------SDLDKYRVIVMDEAHE 709 (1283)
Q Consensus 662 VGy~ir~e~~~----s~~t~I~~~T~G~L-Lr~ll~d-------~~L~~~s~IIIDEaHE 709 (1283)
||..+...+.. .-.+.|+|+|++.| +..|..+ .....+.++|||||+.
T Consensus 154 v~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDs 213 (908)
T PRK13107 154 VGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDS 213 (908)
T ss_pred EEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhh
Confidence 88654432211 12679999999998 4443322 1137788999999983
No 110
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.68 E-value=7.9e-17 Score=156.40 Aligned_cols=91 Identities=56% Similarity=0.841 Sum_probs=68.6
Q ss_pred HHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHHH--HHHHH
Q 000790 980 NSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEES--DAARE 1057 (1283)
Q Consensus 980 ~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~~--~~~r~ 1057 (1283)
+|++.|+.+||||.+|+||++|+.|+.|||+|++|+||+.|+.++|++++++|||+|++.++|..|.+..+.. +..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999999986544332 23444
Q ss_pred hh---------cccCccHHHHH
Q 000790 1058 KF---------FVQESDHLTLL 1070 (1283)
Q Consensus 1058 ~f---------~~~~sDhltll 1070 (1283)
+| ....|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 66789999987
No 111
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=6e-15 Score=184.75 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEE
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI 666 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~i 666 (1283)
+.++|.+++..+..++.+|+.++||+|||+++.++++...+... .++|+.|++.||.|+++.+.. +...+|..||..+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-~v~IVTpTrELA~Qdae~m~~-L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-PVHLVTVNDYLAQRDCEWVGS-VLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-CeEEEeCCHHHHHHHHHHHHH-HHhhcCCeEEEEe
Confidence 88999999999999999999999999999999999997765533 477788999999999988844 5556777777655
Q ss_pred eeeecc----CCCceEEEechhHH-HHHHccCC-CC-------CCCceEEEcCCCc
Q 000790 667 RFEDVT----GPSTLIKYMTDGVL-LRETLKDS-DL-------DKYRVIVMDEAHE 709 (1283)
Q Consensus 667 r~e~~~----s~~t~I~~~T~G~L-Lr~ll~d~-~L-------~~~s~IIIDEaHE 709 (1283)
.+.+.. .-.+.|+|+|||.| +..+.... .+ ..+.++|||||+.
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 543321 12578999999999 77665442 23 3568999999994
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.67 E-value=3.9e-16 Score=162.46 Aligned_cols=156 Identities=24% Similarity=0.239 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEE
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI 666 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~i 666 (1283)
.++|.++++.+.++++++|+||||+|||+++..+++...... ...+++++|+++++.+++.++...+.. .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 378999999999999999999999999999999998876664 348999999999999999999766654 222222211
Q ss_pred eeee-------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcc--hhHHHHHHHHHHHhcCCceEEEe
Q 000790 667 RFED-------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLS--TDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 667 r~e~-------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~--tD~ll~lLk~il~~r~dlklIlm 736 (1283)
.... .......|+|+|++.|+..+... ..+.++++|||||+|..... ...+..++.. +...++.++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~~ 158 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIILL 158 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEEE
Confidence 1111 11246899999999999887652 24566999999999963332 1122222222 223347899999
Q ss_pred ccCcCHHHHH
Q 000790 737 SATLNAQKFS 746 (1283)
Q Consensus 737 SATld~e~fa 746 (1283)
|||+. ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5443
No 113
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.66 E-value=8.2e-16 Score=174.13 Aligned_cols=269 Identities=19% Similarity=0.215 Sum_probs=178.8
Q ss_pred CCEEEEecchHHHHHHHHHHHHHHhccccC-------CeeeEEEeeee---ccCCCceEEEechhHHHHHHccC-CCCCC
Q 000790 630 NGIVGCTQPRRVAAMSVAKRVSEEMDTELG-------DKVGYAIRFED---VTGPSTLIKYMTDGVLLRETLKD-SDLDK 698 (1283)
Q Consensus 630 ~~~Il~tqPrR~LA~qvakrVa~e~~~~lG-------~~VGy~ir~e~---~~s~~t~I~~~T~G~LLr~ll~d-~~L~~ 698 (1283)
....+|+.|.|+||.|+...+ ++|...+. ..+| ++.... ....++.|++.|+|.|+..+... ..|.+
T Consensus 286 ap~avivepsrelaEqt~N~i-~~Fk~h~~np~~r~lLmig-gv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQI-EEFKMHTSNPEVRSLLMIG-GVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CcceeEecCcHHHHHHHHhhH-HHHHhhcCChhhhhhhhhh-hHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 457889999999999999987 44443221 1111 111111 12357999999999999887553 35888
Q ss_pred CceEEEcCCCcC--CcchhHHHHHHHHHH---HhcCCceEEEeccCc---CHHHHHHHhCCCCe-EeecCc-ccceeeee
Q 000790 699 YRVIVMDEAHER--SLSTDVLFGILKKVV---ARRRDFKLIVTSATL---NAQKFSDFFGSVPI-FHIPGR-TFPVNTLY 768 (1283)
Q Consensus 699 ~s~IIIDEaHER--sl~tD~ll~lLk~il---~~r~dlklIlmSATl---d~e~fa~~f~~~pv-i~i~gr-~~pV~i~y 768 (1283)
+.++|+||++.- -.++|++..+...+- .....++.++.|||+ ++..+.+-+..-|+ +.+.|. ..|-.++.
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999841 134555554444433 333458999999999 44555543322221 111111 01111110
Q ss_pred c-----C-----------------CChhhH----------HHHHHHHHH-----HHhhcCCCCCEEEEcCCHHHHHHHHH
Q 000790 769 S-----K-----------------TPCEDY----------VEAAVKQAM-----TIHITSPPGDILIFMTGQDEIEAACF 811 (1283)
Q Consensus 769 ~-----~-----------------~~~~dy----------v~~~v~~~l-----~i~~~~~~G~ILVFl~g~~eIe~l~~ 811 (1283)
. + .+..++ ...+++.+. .........+.||||.++.+|+.+-.
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 0 0 000000 111111110 00111235679999999999999887
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccC
Q 000790 812 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 891 (1283)
Q Consensus 812 ~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~ 891 (1283)
++.++ ....+.++++|+...+.+|..-++.|+.+..+.||||++|++||||.++-||||.
T Consensus 524 ~~~qk----------gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~inv---------- 583 (725)
T KOG0349|consen 524 MMNQK----------GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINV---------- 583 (725)
T ss_pred HHHHc----------CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEE----------
Confidence 77653 3357899999999999999999999999999999999999999999999999983
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCC-CEEEEecC
Q 000790 892 KMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYT 928 (1283)
Q Consensus 892 ~~g~~~L~~~PiS~as~~QRaGRAGR~g~-G~cyrLyt 928 (1283)
+.|-.+.+|+||+||.||.-. |.++.|..
T Consensus 584 --------tlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 584 --------TLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred --------ecCcccchhhhhhhccchhhhcceeEEEee
Confidence 368899999999999999874 88887763
No 114
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.65 E-value=2.3e-15 Score=162.31 Aligned_cols=169 Identities=21% Similarity=0.165 Sum_probs=117.2
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC----CCEEEEecchHHHHHHHHHHHHHHhccccC
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT----NGIVGCTQPRRVAAMSVAKRVSEEMDTELG 659 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~----~~~Il~tqPrR~LA~qvakrVa~e~~~~lG 659 (1283)
.-.++++|.++++.+..++++++++|||+|||++++++++...... +++++|++|++.|+.|++..+... ....+
T Consensus 19 ~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~-~~~~~ 97 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL-GKHTN 97 (203)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH-hccCC
Confidence 3347899999999999999999999999999999888888766543 458999999999999999888553 32233
Q ss_pred CeeeEEEeeee------ccCCCceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCce
Q 000790 660 DKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 732 (1283)
Q Consensus 660 ~~VGy~ir~e~------~~s~~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlk 732 (1283)
..++....... ....+..|+++|++.|+..+... ..+.++++|||||+|.- .+..+...+...+.....+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~-~~~~~~~~~~~~~~~l~~~~~ 176 (203)
T cd00268 98 LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM-LDMGFEDQIREILKLLPKDRQ 176 (203)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh-hccChHHHHHHHHHhCCcccE
Confidence 33332111111 11236789999999998877544 35788999999999952 233222222222223345799
Q ss_pred EEEeccCcC--HHHHHHHhCCCCe
Q 000790 733 LIVTSATLN--AQKFSDFFGSVPI 754 (1283)
Q Consensus 733 lIlmSATld--~e~fa~~f~~~pv 754 (1283)
++++|||+. ...+..-+.+.|+
T Consensus 177 ~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 177 TLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred EEEEeccCCHHHHHHHHHHCCCCE
Confidence 999999995 4444433333444
No 115
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=5.3e-15 Score=172.89 Aligned_cols=274 Identities=22% Similarity=0.242 Sum_probs=177.9
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 680 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 680 (1283)
.++++-+|||.||||.-+++-+.+. ..-++.-|.|.||.+|+.++ ...|.......|--.++.-..+.....+-
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hvS 264 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHVS 264 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccceE
Confidence 4568889999999999998877653 23456679999999999999 56665544444443444333233456677
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCc-----CCc-chhHHHHHHHHHHHhcCCceEEEeccCcC-HHHHHHHhCCCC
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHE-----RSL-STDVLFGILKKVVARRRDFKLIVTSATLN-AQKFSDFFGSVP 753 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHE-----Rsl-~tD~ll~lLk~il~~r~dlklIlmSATld-~e~fa~~f~~~p 753 (1283)
||-+|+ +.-..|.+.||||++. |+. .|-.|+++..+-+....+. |-++ +..+..-
T Consensus 265 cTVEM~-------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGep------svldlV~~i~k~----- 326 (700)
T KOG0953|consen 265 CTVEMV-------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEP------SVLDLVRKILKM----- 326 (700)
T ss_pred EEEEEe-------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCc------hHHHHHHHHHhh-----
Confidence 887776 2345689999999984 332 2446666665544433221 1111 2223322
Q ss_pred eEeecCcccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Q 000790 754 IFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLI 833 (1283)
Q Consensus 754 vi~i~gr~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~I 833 (1283)
.|..+.|..+-...+.. +.+ .++.-...-.+|+++|=+ ++.+|-.+...|.+. ....+
T Consensus 327 ----TGd~vev~~YeRl~pL~--v~~---~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~------------g~~k~ 384 (700)
T KOG0953|consen 327 ----TGDDVEVREYERLSPLV--VEE---TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA------------GNHKC 384 (700)
T ss_pred ----cCCeeEEEeecccCcce--ehh---hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh------------cCcce
Confidence 23333232221111110 000 111111223478888855 677888877777553 35568
Q ss_pred EEecCCCCHHHHHHHHhHhc--CCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHH
Q 000790 834 LPIYSQLPADLQAKIFEKAK--EGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQR 911 (1283)
Q Consensus 834 l~LHs~L~~~er~~I~~~f~--~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QR 911 (1283)
..+||+||++.|..--..|. ++..+|+|||+..++|+|+. |+-||-+-+ ...+.-.+.+++..++.|-
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl---------~Kysg~e~~~it~sqikQI 454 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSL---------IKYSGRETEDITVSQIKQI 454 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeec---------ccCCcccceeccHHHHHHH
Confidence 89999999997665555564 48999999999999999998 888884333 3333445678999999999
Q ss_pred hcccCCCC----CCEEEEecChh
Q 000790 912 AGRAGRTG----PGTCYRLYTES 930 (1283)
Q Consensus 912 aGRAGR~g----~G~cyrLyt~~ 930 (1283)
+|||||.| .|.+-+|+.++
T Consensus 455 AGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 455 AGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred hhcccccccCCcCceEEEeeHhh
Confidence 99999998 39999998865
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.64 E-value=6.7e-15 Score=183.15 Aligned_cols=315 Identities=16% Similarity=0.197 Sum_probs=193.4
Q ss_pred CCCHHHHHHHHHHHHhC----CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 585 LPIFSVRDELLQVIREN----QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~----qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
+.+..-|..++..|... ...++.|.||||||.++++.+.+. +..+..+++++|-..|.-|+..++...|+.+++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~v 275 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGAKVAV 275 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCCChhh
Confidence 44556777777777655 789999999999999998866554 4557899999999999999999999988866543
Q ss_pred eeeE---EEeee---eccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH-HHHH---HHHHHHhcCC
Q 000790 661 KVGY---AIRFE---DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV-LFGI---LKKVVARRRD 730 (1283)
Q Consensus 661 ~VGy---~ir~e---~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~-ll~l---Lk~il~~r~d 730 (1283)
.... .-+.. ........|++.|-.-+. .-|.++++|||||-|+-++-.+- .... +..+.....+
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~ 349 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKEN 349 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhC
Confidence 2211 01111 123456788888865442 23789999999999975544331 1111 1122233457
Q ss_pred ceEEEeccCcCHHHHHHHhCC-CCeEeecCccc---c--eeeeecCCChhhH---HHHHHHHHHHHhhcCCCCCEEEEcC
Q 000790 731 FKLIVTSATLNAQKFSDFFGS-VPIFHIPGRTF---P--VNTLYSKTPCEDY---VEAAVKQAMTIHITSPPGDILIFMT 801 (1283)
Q Consensus 731 lklIlmSATld~e~fa~~f~~-~pvi~i~gr~~---p--V~i~y~~~~~~dy---v~~~v~~~l~i~~~~~~G~ILVFl~ 801 (1283)
+.+|+-|||+..+.+.+...+ ...+.+..|.. + +.+.......... +...+...+.-++ ..+.++|+|+|
T Consensus 350 ~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l-~~geQ~llfln 428 (730)
T COG1198 350 APVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL-ERGEQVLLFLN 428 (730)
T ss_pred CCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH-hcCCeEEEEEc
Confidence 899999999999988887554 22334443332 2 2222221111000 1111111111111 12445566655
Q ss_pred CHHH------------------------------------------------------------HHHHHHHHHHHHHHhh
Q 000790 802 GQDE------------------------------------------------------------IEAACFALKERMEQLI 821 (1283)
Q Consensus 802 g~~e------------------------------------------------------------Ie~l~~~L~e~l~~l~ 821 (1283)
.+.- ++.+.+.|...
T Consensus 429 RRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~----- 503 (730)
T COG1198 429 RRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL----- 503 (730)
T ss_pred cCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH-----
Confidence 5432 22222222222
Q ss_pred ccccCCCCCeEEEEecCCCCHH--HHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCccccc
Q 000790 822 SSTTREVPELLILPIYSQLPAD--LQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ 899 (1283)
Q Consensus 822 ~~~~~~~~~l~Il~LHs~L~~~--er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~ 899 (1283)
.|+..++.+-++.... .-..++..|.+|+..|||.|.+++.|.|+|+|+.|.-.+ -|.-.+...+.
T Consensus 504 ------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfR 571 (730)
T COG1198 504 ------FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFR 571 (730)
T ss_pred ------CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe------chhhhcCCCcc
Confidence 2556666666665542 345678999999999999999999999999999985311 12222222233
Q ss_pred ccccCHHHHHHHhcccCCCC-CCEEE
Q 000790 900 VFPVSRAAADQRAGRAGRTG-PGTCY 924 (1283)
Q Consensus 900 ~~PiS~as~~QRaGRAGR~g-~G~cy 924 (1283)
..--...-+.|=+|||||.+ +|..+
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 33445567889999999995 67655
No 117
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.59 E-value=3.2e-15 Score=141.92 Aligned_cols=90 Identities=59% Similarity=0.891 Sum_probs=80.7
Q ss_pred HHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhc-CchHHHHHHHHHhcCCCcccCChhhHHHHHHHHHh
Q 000790 980 NSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQL-GCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREK 1058 (1283)
Q Consensus 980 ~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~-gc~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~ 1058 (1283)
+|++.|+.+||||.+|+||++|+.|+.||++|++||||+.++.+ +|.+++++|+|++++.++|..| .........+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 8999999999999999998877 444555667777
Q ss_pred hccc-CccHHHHH
Q 000790 1059 FFVQ-ESDHLTLL 1070 (1283)
Q Consensus 1059 f~~~-~sDhltll 1070 (1283)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8877 89999874
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.58 E-value=1.2e-13 Score=174.50 Aligned_cols=284 Identities=16% Similarity=0.102 Sum_probs=164.4
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhc-ccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeee-ccCCCceE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED-VTGPSTLI 678 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~-~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~-~~s~~t~I 678 (1283)
.+..+|..+||||||..+...+.... .....+|++++||..|..|..+.+........ ..++..-.+.. .......|
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~i 341 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGI 341 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCE
Confidence 35789999999999987654433211 12356899999999999999998855332110 00110000000 12234679
Q ss_pred EEechhHHHHHHcc---CCCCCCC-ceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC----HHHHHHHhC
Q 000790 679 KYMTDGVLLRETLK---DSDLDKY-RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN----AQKFSDFFG 750 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~---d~~L~~~-s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld----~e~fa~~f~ 750 (1283)
+++|-..|...+.. ....... -+||+|||| |+....+. ..++ ...|+..+|+||||+- ...+ ..|+
T Consensus 342 ivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~-~~l~---~~~p~a~~lGfTaTP~~~~d~~t~-~~f~ 415 (667)
T TIGR00348 342 IITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA-KNLK---KALKNASFFGFTGTPIFKKDRDTS-LTFA 415 (667)
T ss_pred EEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH-HHHH---hhCCCCcEEEEeCCCccccccccc-cccc
Confidence 99999988753321 1111112 289999999 77655432 2222 3457889999999992 2222 2222
Q ss_pred ---CCCeEee-------cCcccceeeeecCCChh-------------hHH------------------------------
Q 000790 751 ---SVPIFHI-------PGRTFPVNTLYSKTPCE-------------DYV------------------------------ 777 (1283)
Q Consensus 751 ---~~pvi~i-------~gr~~pV~i~y~~~~~~-------------dyv------------------------------ 777 (1283)
+.++... .|-..| +.|...... ++.
T Consensus 416 ~~fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 493 (667)
T TIGR00348 416 YVFGRYLHRYFITDAIRDGLTVK--IDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNED 493 (667)
T ss_pred CCCCCeEEEeeHHHHhhcCCeee--EEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChH
Confidence 1222211 132223 223221110 000
Q ss_pred --HHHHHHHHHHhh----cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHH--------
Q 000790 778 --EAAVKQAMTIHI----TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPAD-------- 843 (1283)
Q Consensus 778 --~~~v~~~l~i~~----~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~-------- 843 (1283)
...+..++ .|. ....++.+|||.++..+..+...|.+.+... .....+.+++....+
T Consensus 494 ~~~~ia~~i~-~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~--------~~~~~vv~s~~~~~~~~~~~~~~ 564 (667)
T TIGR00348 494 RLESIAKDIA-EHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK--------FEASAIVMTGKESDDAEIRDYNK 564 (667)
T ss_pred HHHHHHHHHH-HHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc--------cCCeeEEecCCccchhHHHHHHH
Confidence 00000111 111 1225899999999999988888776543211 012233334332211
Q ss_pred -------------HHHHHHhHhcC-CCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHH
Q 000790 844 -------------LQAKIFEKAKE-GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAAD 909 (1283)
Q Consensus 844 -------------er~~I~~~f~~-G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~ 909 (1283)
....+.+.|.+ +..+|||.++.+-||+|.|.+.+++ .| .|.....++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~Ll 625 (667)
T TIGR00348 565 HIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLL 625 (667)
T ss_pred HhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHH
Confidence 12357778865 6789999999999999999998887 44 566666899
Q ss_pred HHhcccCCC-CCC
Q 000790 910 QRAGRAGRT-GPG 921 (1283)
Q Consensus 910 QRaGRAGR~-g~G 921 (1283)
|.+||+-|. .+|
T Consensus 626 Qai~R~nR~~~~~ 638 (667)
T TIGR00348 626 QAIARTNRIDGKD 638 (667)
T ss_pred HHHHHhccccCCC
Confidence 999999994 544
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.56 E-value=3.1e-13 Score=165.62 Aligned_cols=330 Identities=18% Similarity=0.204 Sum_probs=193.5
Q ss_pred HHHHHHHHHHH----HhC-CeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 588 FSVRDELLQVI----REN-QVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 588 ~~~Q~eil~~I----~~~-qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
..+|..+|..+ .+| +-++|+..||+|||-.+.+++....... -++||+++-|++|..|.+..+...+. .|..
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P--~~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP--FGTK 244 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC--Cccc
Confidence 46777666544 443 4589999999999988766554432221 25899999999999998877654432 2222
Q ss_pred eeEEEeeeeccCCCceEEEechhHHHHHHccC------CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEE
Q 000790 662 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKD------SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 735 (1283)
Q Consensus 662 VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d------~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIl 735 (1283)
+- .-........+.|.++|-..+....... .....|++||||||| |++....- ++|.-+ +.-+++
T Consensus 245 ~n--~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF-----dA~~~g 315 (875)
T COG4096 245 MN--KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF-----DAATQG 315 (875)
T ss_pred ee--eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH-----HHHHHh
Confidence 21 1122223346799999998887765433 124568999999999 88876543 222221 112355
Q ss_pred eccCcCH-H--HHHHHhCCCCeEeec-------Ccccc-----eeeeecC-------C---------Ch--hh-------
Q 000790 736 TSATLNA-Q--KFSDFFGSVPIFHIP-------GRTFP-----VNTLYSK-------T---------PC--ED------- 775 (1283)
Q Consensus 736 mSATld~-e--~fa~~f~~~pvi~i~-------gr~~p-----V~i~y~~-------~---------~~--~d------- 775 (1283)
++||+.. . .-..||++.|+.... |...| +...+.. . .. .+
T Consensus 316 LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d 395 (875)
T COG4096 316 LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARD 395 (875)
T ss_pred hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccc
Confidence 5999932 1 223467555553221 22111 1111110 0 00 00
Q ss_pred --------HHHHHHHHHHHHhhcC-----CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCH
Q 000790 776 --------YVEAAVKQAMTIHITS-----PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPA 842 (1283)
Q Consensus 776 --------yv~~~v~~~l~i~~~~-----~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~ 842 (1283)
.-...+...+...+.. ..+++||||.+..+++.+...|.+...+. .+-.+..+.+.-..
T Consensus 396 ~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~--------~~~~a~~IT~d~~~ 467 (875)
T COG4096 396 FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY--------NGRYAMKITGDAEQ 467 (875)
T ss_pred cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc--------cCceEEEEeccchh
Confidence 0011222222222221 15789999999999999999887754332 23345555555433
Q ss_pred HHHHHHHhHh--cCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC
Q 000790 843 DLQAKIFEKA--KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP 920 (1283)
Q Consensus 843 ~er~~I~~~f--~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~ 920 (1283)
. |..| +.| ++.-..|.|+.+++.||||+|.|..+| |+- .-.|+.-|.|++||+-|..+
T Consensus 468 ~-q~~I-d~f~~ke~~P~IaitvdlL~TGiDvpev~nlV---------F~r---------~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 468 A-QALI-DNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV---------FDR---------KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred h-HHHH-HHHHhcCCCCceEEehhhhhcCCCchheeeee---------ehh---------hhhhHHHHHHHhcCccccCc
Confidence 2 3333 333 345568999999999999999998888 442 23689999999999999875
Q ss_pred --C------EEEEecCh---hhhhhhcCCCCcchhhccchhHHHHHHh
Q 000790 921 --G------TCYRLYTE---SAYLNEMLPSPVPEIQRTNLGNVVLLLK 957 (1283)
Q Consensus 921 --G------~cyrLyt~---~~~~~~m~~~~~PEI~r~~L~~vvL~Lk 957 (1283)
| ..|.++.- -.| -.|.+...+.-.+..|.+-++.-.
T Consensus 528 ~~~~~~~dK~~F~ifDf~~~~~~-~~~~~~~~e~~~~~~l~~rLF~~~ 574 (875)
T COG4096 528 DLGGPEQDKEFFTIFDFVDNTEY-FEMDPEMREGRVRVSLEQRLFADR 574 (875)
T ss_pred cccCccccceeEEEEEhhhhhhh-hccCcccccccccchHHHHHhhhh
Confidence 3 24455432 122 124444455555555555444433
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.54 E-value=1.9e-12 Score=168.16 Aligned_cols=183 Identities=20% Similarity=0.224 Sum_probs=109.0
Q ss_pred ceEEEeccCcC----HHHHHHHhCCCC--eEeecCcccce---eeeecC--------CChhhHHHHHHHHHHHHhhcCCC
Q 000790 731 FKLIVTSATLN----AQKFSDFFGSVP--IFHIPGRTFPV---NTLYSK--------TPCEDYVEAAVKQAMTIHITSPP 793 (1283)
Q Consensus 731 lklIlmSATld----~e~fa~~f~~~p--vi~i~gr~~pV---~i~y~~--------~~~~dyv~~~v~~~l~i~~~~~~ 793 (1283)
..+|++|||+. .+.|.+.+|-.. ...+....|+. ...|.. .....|.......+..+.. ..+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 36899999994 455666666321 11221222331 111211 1123455555555544432 346
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC
Q 000790 794 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD 873 (1283)
Q Consensus 794 G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp 873 (1283)
|.+|||+++....+.++..|...+. ..++.++. .+.. ..+..+++.|+.+...|||||+.+..|||+|
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~---------~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPE---------FEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFP 742 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhcc---------ccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccC
Confidence 8999999999999999988864211 11233332 2222 4678899999999999999999999999999
Q ss_pred Cee--EEEEcCCccceeccCC----------CCcccc--cccccCHHHHHHHhcccCCCCC--CEEEEe
Q 000790 874 GIF--YVIDTGYGKMKVYNPK----------MGMDAL--QVFPVSRAAADQRAGRAGRTGP--GTCYRL 926 (1283)
Q Consensus 874 ~V~--~VIDsGl~K~~~yD~~----------~g~~~L--~~~PiS~as~~QRaGRAGR~g~--G~cyrL 926 (1283)
+.. .||-.|+--..--||. .|-+.+ ...|.....+.|-+||.=|... |..+.|
T Consensus 743 g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 743 GNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred CCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 875 4555554322111110 111111 1124455678899999999884 766655
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.8e-12 Score=160.80 Aligned_cols=277 Identities=19% Similarity=0.210 Sum_probs=182.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
..+.--..+.|..|.-....+..|+..-|+||||.||||..+.+-+-.+. ++++++++.||..|+.|+++++. .|...
T Consensus 74 fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~-~~~e~ 151 (1187)
T COG1110 74 FFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLK-KFAED 151 (1187)
T ss_pred HHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHH-HHHhh
Confidence 33444456889999999999999999999999999999986554443332 25789999999999999999995 45444
Q ss_pred cC---CeeeEEEeee---------eccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCc---CCcchhHHHHHH-
Q 000790 658 LG---DKVGYAIRFE---------DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHE---RSLSTDVLFGIL- 721 (1283)
Q Consensus 658 lG---~~VGy~ir~e---------~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHE---Rsl~tD~ll~lL- 721 (1283)
.| ..++|.-... ...+.+.+|++.|.+.|...+-.-.. -++++|++|.++- .+-+.|-++.++
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcC
Confidence 44 1111221111 12345789999999988776532111 3689999999994 344445333222
Q ss_pred ---------------HHHH----------------------HhcCCceEEEeccCcC-----HHHHHHHhCCCCeEeecC
Q 000790 722 ---------------KKVV----------------------ARRRDFKLIVTSATLN-----AQKFSDFFGSVPIFHIPG 759 (1283)
Q Consensus 722 ---------------k~il----------------------~~r~dlklIlmSATld-----~e~fa~~f~~~pvi~i~g 759 (1283)
+..+ .....-.+|++|||.. ...|.+.+|- .+.+
T Consensus 231 f~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----evG~ 306 (1187)
T COG1110 231 FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EVGS 306 (1187)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----ccCc
Confidence 1111 1123457999999993 3456666652 1111
Q ss_pred c---ccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCC---HHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Q 000790 760 R---TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG---QDEIEAACFALKERMEQLISSTTREVPELLI 833 (1283)
Q Consensus 760 r---~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g---~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~I 833 (1283)
. .-++...|...+. ++..+..+-.+ +...|||++. ++.++.+++.|.. .++.+
T Consensus 307 ~~~~LRNIvD~y~~~~~---~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~-------------~Gi~a 365 (1187)
T COG1110 307 GGEGLRNIVDIYVESES---LEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRS-------------HGINA 365 (1187)
T ss_pred cchhhhheeeeeccCcc---HHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHh-------------cCceE
Confidence 1 1233344443321 22222211111 3458999998 7777777777754 37888
Q ss_pred EEecCCCCHHHHHHHHhHhcCCCeeEEEec----CcccccCCCCC-eeEEEEcCCccce
Q 000790 834 LPIYSQLPADLQAKIFEKAKEGTRKCIVAT----NIAETSLTVDG-IFYVIDTGYGKMK 887 (1283)
Q Consensus 834 l~LHs~L~~~er~~I~~~f~~G~rKVLVAT----nIAEtGIdIp~-V~~VIDsGl~K~~ 887 (1283)
..+|+. ..+.++.|..|...|+|.. +++-+|||+|. |+|+|-.|.-|.+
T Consensus 366 ~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 366 ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred EEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 889883 2678999999999999965 48999999994 7999999987654
No 122
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.51 E-value=1.6e-12 Score=168.01 Aligned_cols=308 Identities=16% Similarity=0.106 Sum_probs=181.8
Q ss_pred CHHHHHHHHHHHH----hCCeEEEEccCCCChHHHHHHHHHHh--cccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 587 IFSVRDELLQVIR----ENQVVVVVGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 587 i~~~Q~eil~~I~----~~qvvII~gpTGSGKTtqi~q~Lle~--~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
+.+||.+.+..+. .+...||.-+.|.|||.|+..+|... .....+.+||++|.-. ..+....+.+... ...
T Consensus 170 Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~Sl-L~nW~~Ei~kw~p--~l~ 246 (1033)
T PLN03142 170 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKST-LGNWMNEIRRFCP--VLR 246 (1033)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHH-HHHHHHHHHHHCC--CCc
Confidence 5688888877664 56788999999999999976555332 1122356888889644 4556665543221 111
Q ss_pred eeeEEEeee--------eccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH-HHHHHHHHHHhcCCc
Q 000790 661 KVGYAIRFE--------DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV-LFGILKKVVARRRDF 731 (1283)
Q Consensus 661 ~VGy~ir~e--------~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~-ll~lLk~il~~r~dl 731 (1283)
.+-|..... ........|+++|..++.+....- .--.+.+||||||| +.-+... +...++.+ . ..
T Consensus 247 v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L-~k~~W~~VIvDEAH-rIKN~~Sklskalr~L---~-a~ 320 (1033)
T PLN03142 247 AVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL-KRFSWRYIIIDEAH-RIKNENSLLSKTMRLF---S-TN 320 (1033)
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh-ccCCCCEEEEcCcc-ccCCHHHHHHHHHHHh---h-cC
Confidence 111111000 011234678899999887653211 12347899999999 4444432 22333332 2 23
Q ss_pred eEEEeccCc---CHHHH------------------HHHhCCC-----------------CeEe--e---cCccccee---
Q 000790 732 KLIVTSATL---NAQKF------------------SDFFGSV-----------------PIFH--I---PGRTFPVN--- 765 (1283)
Q Consensus 732 klIlmSATl---d~e~f------------------a~~f~~~-----------------pvi~--i---~gr~~pV~--- 765 (1283)
..+++|+|+ +...| ..||... |++. . .....|..
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 458899998 33332 2233210 0000 0 00001110
Q ss_pred eeecCCCh--hhHHHH-----------------HHHHHH----------------------------------------H
Q 000790 766 TLYSKTPC--EDYVEA-----------------AVKQAM----------------------------------------T 786 (1283)
Q Consensus 766 i~y~~~~~--~dyv~~-----------------~v~~~l----------------------------------------~ 786 (1283)
+.+..... ..+... .+..++ .
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 01111000 000000 000000 0
Q ss_pred HhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcC---CCeeEEEec
Q 000790 787 IHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE---GTRKCIVAT 863 (1283)
Q Consensus 787 i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~---G~rKVLVAT 863 (1283)
-.+...+.+||||+.-...++.+...|.. .++.++.+||+++..+|..+++.|.. +...+|++|
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~-------------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMY-------------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHH-------------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 01122356899998655544444444422 36778899999999999999999954 345678999
Q ss_pred CcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC---CEEEEecChhhhhh
Q 000790 864 NIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP---GTCYRLYTESAYLN 934 (1283)
Q Consensus 864 nIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~---G~cyrLyt~~~~~~ 934 (1283)
.+++.|||+...++||. || .|.+++...|++|||-|.|. -.+|+|++....+.
T Consensus 548 rAGGlGINLt~Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 548 RAGGLGINLATADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred cccccCCchhhCCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 99999999999999997 88 68889999999999999994 57899999876644
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.47 E-value=7.9e-13 Score=138.78 Aligned_cols=164 Identities=24% Similarity=0.203 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHhC-CeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 585 LPIFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~-qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
.+..++|.+++..+... ++++|.|+||+|||+.+..++++..... ...++++.|+..++.++...+...+....+..+
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 45678999999999988 9999999999999999888888876543 357999999999999999998765542211111
Q ss_pred eEEEeeee-------ccCCCceEEEechhHHHHHHccCC-CCCCCceEEEcCCCcCCc--chhHHHHHHHHHHHhcCCce
Q 000790 663 GYAIRFED-------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSL--STDVLFGILKKVVARRRDFK 732 (1283)
Q Consensus 663 Gy~ir~e~-------~~s~~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHERsl--~tD~ll~lLk~il~~r~dlk 732 (1283)
.+ ..... .......++++|.+.+...+.... ....+++|||||+|.... ..+.+..++..+ .+..+
T Consensus 87 ~~-~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~~~ 162 (201)
T smart00487 87 GL-YGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---PKNVQ 162 (201)
T ss_pred EE-eCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---Cccce
Confidence 11 11111 112233899999999998876543 577889999999996442 222333333322 46789
Q ss_pred EEEeccCc--CHHHHHHHhCCC
Q 000790 733 LIVTSATL--NAQKFSDFFGSV 752 (1283)
Q Consensus 733 lIlmSATl--d~e~fa~~f~~~ 752 (1283)
+|+||||+ +...+...+...
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~ 184 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLND 184 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCC
Confidence 99999999 466665555443
No 124
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=6.6e-13 Score=154.59 Aligned_cols=320 Identities=15% Similarity=0.049 Sum_probs=199.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchHHHHHHHHHHHHHH
Q 000790 575 SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEE 653 (1283)
Q Consensus 575 ~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~LA~qvakrVa~e 653 (1283)
..++++....---+.+|.++|+.+.+++++++.-.|.+||+|+........... .....+++.|+.+++....+-..-.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEE
Confidence 345555555566789999999999999999999999999999854433222111 1234666778877775432211000
Q ss_pred hccccCCeeeEEEeeeecc---------CCCceEEEechhHHHHHHccCC-----CCCCCceEEEcCCCcCCcchh-HHH
Q 000790 654 MDTELGDKVGYAIRFEDVT---------GPSTLIKYMTDGVLLRETLKDS-----DLDKYRVIVMDEAHERSLSTD-VLF 718 (1283)
Q Consensus 654 ~~~~lG~~VGy~ir~e~~~---------s~~t~I~~~T~G~LLr~ll~d~-----~L~~~s~IIIDEaHERsl~tD-~ll 718 (1283)
+..-....-.| +...+.. ..+.+++|..+.+.....+.+. .+-..-++++||+|....-+. ..-
T Consensus 355 ~~~I~~~K~A~-V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 355 VEVIKARKSAY-VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEehhhhhcce-eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 00000000011 1111111 1356678888877766554432 234456789999996332222 212
Q ss_pred HHHHHHH------HhcCCceEEEeccCc-C-HHHHHHHhCCC--CeEeecCcccceeee--ecCC-------ChhhHHHH
Q 000790 719 GILKKVV------ARRRDFKLIVTSATL-N-AQKFSDFFGSV--PIFHIPGRTFPVNTL--YSKT-------PCEDYVEA 779 (1283)
Q Consensus 719 ~lLk~il------~~r~dlklIlmSATl-d-~e~fa~~f~~~--pvi~i~gr~~pV~i~--y~~~-------~~~dyv~~ 779 (1283)
..++.++ ....+++++-.|||+ + .....+.|+-. .++++.|..-.-+.+ +.+. .-++.+.+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 2223222 234679999999999 3 55566777643 456777765433222 2221 11223332
Q ss_pred HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeE
Q 000790 780 AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKC 859 (1283)
Q Consensus 780 ~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKV 859 (1283)
..+...+.. ..+-.+|.||+.+.-|+-+....++.+.+.. . ..--.|..+.||...++|.+|....-.|..+-
T Consensus 514 ~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~----~-~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 514 VSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETA----P-HLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred HHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhh----H-HHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 222222221 2256799999998877766555544432211 0 00123567889999999999999999999999
Q ss_pred EEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC
Q 000790 860 IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP 920 (1283)
Q Consensus 860 LVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~ 920 (1283)
|||||.+|.||||.+++.|+.+|| |.|.+++.|.+|||||...
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred EEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 999999999999999999999995 9999999999999999874
No 125
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.43 E-value=1.4e-12 Score=128.83 Aligned_cols=136 Identities=32% Similarity=0.302 Sum_probs=97.7
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeecc------CC
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT------GP 674 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~------s~ 674 (1283)
++++|.|+||+|||++++.++...... ..++++|++|++.++.++...+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 468999999999999988888776543 3568999999999999999988765543 44555544444433 46
Q ss_pred CceEEEechhHHHHHHccCC-CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 675 STLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~-~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
...|+++|.+.+.+.+.... ....+++|||||+|.-. ...................++|++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLL-NQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHh-hcchHHHHHHHHhhCCccceEEEEeccC
Confidence 78999999999888775442 35678999999999422 2222221122333445678999999996
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.42 E-value=2.1e-12 Score=161.98 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=99.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccC
Q 000790 791 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSL 870 (1283)
Q Consensus 791 ~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGI 870 (1283)
..+..+||||+++..++.++..|.+. ++.+..+||+++..+|..++..|+.|...|||||+++++|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~-------------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL-------------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh-------------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 34678999999999999999988753 67788999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChh
Q 000790 871 TVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTES 930 (1283)
Q Consensus 871 dIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~ 930 (1283)
|+|++.+||. +|... .-.|.+..+|+||+|||||..+|.|+.+++..
T Consensus 507 DiP~v~lVvi--------~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 507 DLPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred eeCCCcEEEE--------eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 9999999997 44321 11578899999999999999999999888753
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.7e-11 Score=150.90 Aligned_cols=130 Identities=19% Similarity=0.094 Sum_probs=85.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 575 SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 575 ~~~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
..+....--.+..|..|--..-.+..| -|....||+|||+++.++++-..+. +..|.|+.|+-.||.+-++.+...+
T Consensus 67 vREa~~R~lg~r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~-G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGLRPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ-GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc-CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 333333334455556665444445555 4779999999999988877766554 4567777899999999998886554
Q ss_pred ccccCCeeeEEEeeeecc----CCCceEEEechhHHHHHHccC--------CCCCCCceEEEcCCC
Q 000790 655 DTELGDKVGYAIRFEDVT----GPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 708 (1283)
Q Consensus 655 ~~~lG~~VGy~ir~e~~~----s~~t~I~~~T~G~LLr~ll~d--------~~L~~~s~IIIDEaH 708 (1283)
. .+|..||+........ .-.+.|+|+|+.-|---.+.| .....+.+.|||||+
T Consensus 144 ~-~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvD 208 (764)
T PRK12326 144 E-ALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEAD 208 (764)
T ss_pred H-hcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchh
Confidence 4 5788888654322211 135789999988643222221 225678899999998
No 128
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.38 E-value=2.1e-10 Score=147.90 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhc
Q 000790 774 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK 853 (1283)
Q Consensus 774 ~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~ 853 (1283)
.+|.......+..+. ..+|.+|||+++....+.++..|... .+.++.-..+.+ +.++.+.|.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------------~~~~l~Qg~~~~---~~~l~~~F~ 691 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------------QVSHLAQEKNGT---AYNIKKRFD 691 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------------CCcEEEeCCCcc---HHHHHHHHH
Confidence 456655555554444 45789999999999999888877431 222322221222 345788898
Q ss_pred CCCeeEEEecCcccccCCCC--CeeEEEEcCCccceeccCC----------CCcccc--cccccCHHHHHHHhcccCCCC
Q 000790 854 EGTRKCIVATNIAETSLTVD--GIFYVIDTGYGKMKVYNPK----------MGMDAL--QVFPVSRAAADQRAGRAGRTG 919 (1283)
Q Consensus 854 ~G~rKVLVATnIAEtGIdIp--~V~~VIDsGl~K~~~yD~~----------~g~~~L--~~~PiS~as~~QRaGRAGR~g 919 (1283)
.+...||++|..+-.|||+| +...||-.++--..-.||- .|-+.+ ...|.-...+.|=+||.=|..
T Consensus 692 ~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~ 771 (820)
T PRK07246 692 RGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRE 771 (820)
T ss_pred cCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCC
Confidence 88889999999999999997 3555554554322111221 111212 123444567889999999988
Q ss_pred C--CEEEEe
Q 000790 920 P--GTCYRL 926 (1283)
Q Consensus 920 ~--G~cyrL 926 (1283)
. |..+.|
T Consensus 772 ~D~Gvv~il 780 (820)
T PRK07246 772 DQKSAVLIL 780 (820)
T ss_pred CCcEEEEEE
Confidence 3 876655
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.37 E-value=7.5e-12 Score=157.83 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=98.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCC
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 871 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGId 871 (1283)
.+.++||||+++..++.++..|.+ .++.+..+||+++..+|..++..|+.|...|||||+++++|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~-------------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKE-------------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-------------cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 467899999999999999988865 2788999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecCh
Q 000790 872 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTE 929 (1283)
Q Consensus 872 Ip~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~ 929 (1283)
+|++++||. ||... .-.|.+..+|+||+|||||...|.|+.+++.
T Consensus 512 lp~v~lVii--------~d~ei-----fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 512 IPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred ccCCcEEEE--------eCCcc-----cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999997 44211 1147789999999999999888999999884
No 130
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.37 E-value=6.2e-12 Score=124.88 Aligned_cols=104 Identities=26% Similarity=0.467 Sum_probs=93.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCC
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 871 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGId 871 (1283)
..+++||||++...++.++..|.+ ....+..+||+++..++..+++.|..+..+|||+|+++++|+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d 93 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-------------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGID 93 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-------------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcC
Confidence 578999999999999999888764 3677999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEe
Q 000790 872 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRL 926 (1283)
Q Consensus 872 Ip~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrL 926 (1283)
+|++++||. ++ .|.+...+.|++||+||.| .|.|+.+
T Consensus 94 ~~~~~~vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 94 LPNVSVVIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhCCEEEE--------eC----------CCCCHHHheecccccccCCCCceEEeC
Confidence 999999996 44 4889999999999999999 5888754
No 131
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.36 E-value=2.7e-12 Score=130.39 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=93.0
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeee-eccCCCceE
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFE-DVTGPSTLI 678 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e-~~~s~~t~I 678 (1283)
+++..+|...+|+|||+.++--++.+.+..+.++|++.|||++|.++++.+. |..+.|....- .....+..|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccCCCcc
Confidence 5678899999999999975555666666778899999999999998887773 22233332222 123466789
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
.+||.+.+.+.++....+.+|++||+||||--+..+-...++++..... ...++|+||||+.
T Consensus 76 ~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 76 DVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp EEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 9999999988887766689999999999996555555667777777544 4578999999973
No 132
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.36 E-value=7e-11 Score=149.70 Aligned_cols=96 Identities=22% Similarity=0.132 Sum_probs=72.4
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHh------------------------
Q 000790 797 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKA------------------------ 852 (1283)
Q Consensus 797 LVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f------------------------ 852 (1283)
||=+.++..+-.++..|...+.. ....+.++.|||..+...|..+++..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~-------~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~ 832 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAE-------EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQN 832 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccc-------cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhc
Confidence 66677788877787777654321 22457789999999888777766442
Q ss_pred --cCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC
Q 000790 853 --KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP 920 (1283)
Q Consensus 853 --~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~ 920 (1283)
..+...|||||.++|.|+|++ .+++| +.|.+..+.+||+||+.|.+.
T Consensus 833 ~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 833 SPALNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ccccCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhccccccc
Confidence 125779999999999999998 44444 257888999999999999884
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=7.4e-11 Score=148.04 Aligned_cols=329 Identities=18% Similarity=0.187 Sum_probs=211.7
Q ss_pred HHHHHHHHH-HhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEee
Q 000790 590 VRDELLQVI-RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF 668 (1283)
Q Consensus 590 ~Q~eil~~I-~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~ 668 (1283)
+|.++...+ ..|.+|+|.+|+|||||.++-+.++. -...+.++++.|.-+.+..++..+...++.-+|..+.- ..+
T Consensus 1147 iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~-l~g 1223 (1674)
T KOG0951|consen 1147 IQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVK-LTG 1223 (1674)
T ss_pred ceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEe-cCC
Confidence 344444443 35788999999999999999888887 23356899999999999988888777666555544421 111
Q ss_pred ee----ccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcch----hHHHHHHHHH-HHhcCCceEEEeccC
Q 000790 669 ED----VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST----DVLFGILKKV-VARRRDFKLIVTSAT 739 (1283)
Q Consensus 669 e~----~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~t----D~ll~lLk~i-l~~r~dlklIlmSAT 739 (1283)
+. +.-...+|+++||..+-.. . ....+++.|.||.|.-+-.. .++.. ++.+ ...-++++++.+|-.
T Consensus 1224 e~s~~lkl~~~~~vii~tpe~~d~l--q--~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1224 ETSLDLKLLQKGQVIISTPEQWDLL--Q--SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSS 1298 (1674)
T ss_pred ccccchHHhhhcceEEechhHHHHH--h--hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehh
Confidence 11 1224678999999875332 1 57789999999999644111 12222 2222 233467899999999
Q ss_pred c-CHHHHHHHhCCCCeEeec--CcccceeeeecCCChhhHHH---HHHH---HHHHHhhcCCCCCEEEEcCCHHHHHHHH
Q 000790 740 L-NAQKFSDFFGSVPIFHIP--GRTFPVNTLYSKTPCEDYVE---AAVK---QAMTIHITSPPGDILIFMTGQDEIEAAC 810 (1283)
Q Consensus 740 l-d~e~fa~~f~~~pvi~i~--gr~~pV~i~y~~~~~~dyv~---~~v~---~~l~i~~~~~~G~ILVFl~g~~eIe~l~ 810 (1283)
+ |+..+ -++....+++++ .|..|.+++........+.. +..+ ..+..| ...+.+.+||+|+++.+..++
T Consensus 1299 lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~-a~~~k~~~vf~p~rk~~~~~a 1376 (1674)
T KOG0951|consen 1299 LANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH-AGNRKPAIVFLPTRKHARLVA 1376 (1674)
T ss_pred hccchhh-ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH-hcCCCCeEEEeccchhhhhhh
Confidence 8 78777 233334455544 56666666554433222221 1111 112222 235778999999999998887
Q ss_pred HHHHHHH------------HHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEE
Q 000790 811 FALKERM------------EQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYV 878 (1283)
Q Consensus 811 ~~L~e~l------------~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~V 878 (1283)
..|.... .+ ............|. |-+|+..++..+-..|..|.+.|+|...- -.|+-...- .|
T Consensus 1377 ~~~~~~s~~~~~~~l~~~~e~-~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~-lV 1451 (1674)
T KOG0951|consen 1377 VDLVTFSHADEPDYLLSELEE-CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAH-LV 1451 (1674)
T ss_pred hccchhhccCcHHHHHHHHhc-chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccce-EE
Confidence 6553211 00 00111122233344 99999999999999999999999987766 778777644 44
Q ss_pred EEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEec--ChhhhhhhcCCCCcc
Q 000790 879 IDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLY--TESAYLNEMLPSPVP 942 (1283)
Q Consensus 879 IDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLy--t~~~~~~~m~~~~~P 942 (1283)
|-.| ..+||.+..-. .+.+.+...|+.|+|.| .|+|+.+. +...|...+...+.|
T Consensus 1452 vvmg---t~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1452 VVMG---TQYYDGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EEec---ceeeccccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 4344 56788654422 46777999999999988 56666665 456676766666655
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.33 E-value=3.2e-10 Score=133.36 Aligned_cols=163 Identities=20% Similarity=0.173 Sum_probs=118.9
Q ss_pred ceEEEeccCcCHHHHHHHhCCC--CeEeecCcccc-eeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 000790 731 FKLIVTSATLNAQKFSDFFGSV--PIFHIPGRTFP-VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 807 (1283)
Q Consensus 731 lklIlmSATld~e~fa~~f~~~--pvi~i~gr~~p-V~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe 807 (1283)
.++|.+|||+..-.+..--+.. .++.-.|-.-| +++.-....+.|.+.. +.... ..+..+||-+-|++.++
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ievRp~~~QvdDL~~E----I~~r~--~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSE----IRKRV--AKNERVLVTTLTKKMAE 460 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCCceeeecCCCcHHHHHHH----HHHHH--hcCCeEEEEeehHHHHH
Confidence 5899999999655554432221 12222233333 2222222333333332 22211 22578999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccce
Q 000790 808 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 887 (1283)
Q Consensus 808 ~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~ 887 (1283)
.+.+.|.+. ++.+..+||.+..-+|..|+...+.|...|||.-|.+-.|||+|.|.+|.-
T Consensus 461 dLT~Yl~e~-------------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI------- 520 (663)
T COG0556 461 DLTEYLKEL-------------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI------- 520 (663)
T ss_pred HHHHHHHhc-------------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE-------
Confidence 999888763 899999999999999999999999999999999999999999999999975
Q ss_pred eccCC-CCcccccccccCHHHHHHHhcccCCCCCCEEEEe
Q 000790 888 VYNPK-MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRL 926 (1283)
Q Consensus 888 ~yD~~-~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrL 926 (1283)
.|.. -| +.-|-.+.+|-+|||.|.-.|+++..
T Consensus 521 -lDADKeG------FLRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 521 -LDADKEG------FLRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred -eecCccc------cccccchHHHHHHHHhhccCCeEEEE
Confidence 5542 23 46788899999999999999998744
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=5.2e-11 Score=149.93 Aligned_cols=127 Identities=19% Similarity=0.155 Sum_probs=89.1
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 581 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 581 ~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
.|+.|-+.++--+++-.+.=++--|....||+|||+++.++++-..+. +..|.++.|+-.||.+-+..+...+. .+|.
T Consensus 75 ~~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~-G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl 152 (913)
T PRK13103 75 GKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS-GKGVHVVTVNDYLARRDANWMRPLYE-FLGL 152 (913)
T ss_pred HHHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHHHhc-ccCC
Confidence 344565666666677777667777999999999999988877765554 45577778999999999998865553 5788
Q ss_pred eeeEEEeeeec----cCCCceEEEechhHH----HHH-Hc---cCCCCCCCceEEEcCCCc
Q 000790 661 KVGYAIRFEDV----TGPSTLIKYMTDGVL----LRE-TL---KDSDLDKYRVIVMDEAHE 709 (1283)
Q Consensus 661 ~VGy~ir~e~~----~s~~t~I~~~T~G~L----Lr~-ll---~d~~L~~~s~IIIDEaHE 709 (1283)
.||+....... ..-.+.|+|+|...| |+. +. .+.....+.++||||+|.
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 88864332111 112478999999986 332 11 112357889999999993
No 136
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=3.3e-11 Score=152.07 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=119.4
Q ss_pred ceEEEeccCc--CHHHHHHHhCCCCeEeecCccccee------eeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 000790 731 FKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFPVN------TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG 802 (1283)
Q Consensus 731 lklIlmSATl--d~e~fa~~f~~~pvi~i~gr~~pV~------i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g 802 (1283)
.++-+||.|. ....|.+.++ ..++.||... |+. ..|.. ......+.+..+...| ..+.+|||||++
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnr-P~~R~D~~d~vy~t--~~eK~~Ali~~I~~~~--~~grpVLIft~S 607 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYK-LDVVVIPTNK-PIVRKDMDDLVYKT--RREKYNAIVLKVEELQ--KKGQPVLVGTAS 607 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhC-CcEEECCCCC-CcceecCCCeEecC--HHHHHHHHHHHHHHHh--hCCCCEEEEeCc
Confidence 3688999998 4556766664 5667776532 221 12211 1223334444444444 346789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCC---CeeEE-
Q 000790 803 QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD---GIFYV- 878 (1283)
Q Consensus 803 ~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp---~V~~V- 878 (1283)
++.++.++..|... ++....||+ .+.+|...+..|..+...|+||||+|++|+||+ +|..|
T Consensus 608 ve~sE~Ls~~L~~~-------------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 608 VEVSETLSRMLRAK-------------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred HHHHHHHHHHHHHc-------------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 99999999888653 666778886 577888999999999999999999999999999 55433
Q ss_pred ----EEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEecChhhh
Q 000790 879 ----IDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 932 (1283)
Q Consensus 879 ----IDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 932 (1283)
|+ ++ .|.|...+.||+|||||.| ||.+..+++.++.
T Consensus 673 GL~VIg--------te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 673 GLFILG--------SE----------RHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CceeeC--------CC----------CCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 43 22 5788889999999999999 6999999997664
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.26 E-value=1.1e-11 Score=113.66 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=69.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHH
Q 000790 829 PELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAA 908 (1283)
Q Consensus 829 ~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~ 908 (1283)
.++.+..+||+++..++..+++.|..+...|||||+++++|||+|++++||. |+ .|.+...|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHH
Confidence 4888999999999999999999999999999999999999999999999998 55 58999999
Q ss_pred HHHhcccCCCC
Q 000790 909 DQRAGRAGRTG 919 (1283)
Q Consensus 909 ~QRaGRAGR~g 919 (1283)
.|++||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999986
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.25 E-value=1.8e-11 Score=128.60 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHh-------CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 585 LPIFSVRDELLQVIRE-------NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~-------~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
+.++++|.+++..+.. ++.++|.+|||||||.++..++.+... ++++++|+..++.|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 3467899999988874 699999999999999998876666543 88889999999999998883222211
Q ss_pred cCCeee-----------------EEEeeeeccCCCceEEEechhHHHHHHccC------------CCCCCCceEEEcCCC
Q 000790 658 LGDKVG-----------------YAIRFEDVTGPSTLIKYMTDGVLLRETLKD------------SDLDKYRVIVMDEAH 708 (1283)
Q Consensus 658 lG~~VG-----------------y~ir~e~~~s~~t~I~~~T~G~LLr~ll~d------------~~L~~~s~IIIDEaH 708 (1283)
. .... ..............+.+.|...|....... .....+++||+||||
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 78 Y-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp E-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred h-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 0 0000 000001112346678899988887664321 124567899999999
Q ss_pred cCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 709 ERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 709 ERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+ ...... .+.+.. .+...+|+||||+
T Consensus 157 ~-~~~~~~----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 157 H-YPSDSS----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp C-THHHHH----HHHHHH-SSCCEEEEEESS-
T ss_pred h-cCCHHH----HHHHHc-CCCCeEEEEEeCc
Confidence 4 333322 222222 6678899999997
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.23 E-value=3.4e-10 Score=142.09 Aligned_cols=125 Identities=18% Similarity=0.051 Sum_probs=84.6
Q ss_pred HhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 582 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
++.|-+.++--+++-.+.-++--|....||.|||+++.++++-..+. +..|-|+.+...||..-++.+... -..+|.+
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-G~~VhVvT~NdyLA~RD~e~m~pv-y~~LGLs 147 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHIVTVNDYLAKRDQEWMGQI-YRFLGLT 147 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc-CCceEEEeCCHHHHHHHHHHHHHH-HHHcCCc
Confidence 44555555555677777777888999999999999988777655444 445666678899998888776443 3467888
Q ss_pred eeEEEeeeec----cCCCceEEEechhHHH-----HHHccC---CCCCCCceEEEcCCC
Q 000790 662 VGYAIRFEDV----TGPSTLIKYMTDGVLL-----RETLKD---SDLDKYRVIVMDEAH 708 (1283)
Q Consensus 662 VGy~ir~e~~----~s~~t~I~~~T~G~LL-----r~ll~d---~~L~~~s~IIIDEaH 708 (1283)
||+.....+. ..=.+.|+|+|+.-|- ..+... .....+.+.|||||+
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 8865433221 1235689999987442 222211 125678899999988
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=1.5e-09 Score=135.71 Aligned_cols=126 Identities=20% Similarity=0.139 Sum_probs=78.3
Q ss_pred HhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 582 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
++.|-++++--+++-.+.=++--|....||=|||+++.++++-.++...+.-+||+ .--||.-=+..+...+ ..+|.+
T Consensus 72 ~R~lG~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTv-NdYLA~RDae~mg~vy-~fLGLs 149 (925)
T PRK12903 72 KRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTV-NEYLAERDAEEMGKVF-NFLGLS 149 (925)
T ss_pred HHHhCCCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEec-chhhhhhhHHHHHHHH-HHhCCc
Confidence 44455555555566666555556899999999999988877766666555555554 4445544444443222 357888
Q ss_pred eeEEEeeeec----cCCCceEEEechhHHHHHHccC--------CCCCCCceEEEcCCCc
Q 000790 662 VGYAIRFEDV----TGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAHE 709 (1283)
Q Consensus 662 VGy~ir~e~~----~s~~t~I~~~T~G~LLr~ll~d--------~~L~~~s~IIIDEaHE 709 (1283)
||..+...+. ..-.+.|+|+|+.-|---.+.| .....+.+.|||||+.
T Consensus 150 vG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDS 209 (925)
T PRK12903 150 VGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDS 209 (925)
T ss_pred eeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchh
Confidence 8865543221 1235789999988653322222 2256788899999883
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.15 E-value=1.2e-08 Score=133.68 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhc
Q 000790 774 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK 853 (1283)
Q Consensus 774 ~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~ 853 (1283)
..|.......+..+. ...+|.+|||+++....+.++..|...+. ...+.++. . ++....+.++++.|.
T Consensus 734 ~~~~~~la~~i~~l~-~~~~g~~LVLFtSy~~l~~v~~~l~~~~~---------~~~~~ll~-Q-g~~~~~r~~l~~~F~ 801 (928)
T PRK08074 734 EEYIEEVAAYIAKIA-KATKGRMLVLFTSYEMLKKTYYNLKNEEE---------LEGYVLLA-Q-GVSSGSRARLTKQFQ 801 (928)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHHHHhhccc---------ccCceEEe-c-CCCCCCHHHHHHHHH
Confidence 455555555555543 33478999999999999999988865321 11233322 2 333334677888898
Q ss_pred CCCeeEEEecCcccccCCCCC--eeEEEEcCCccceeccCC----------CCcccc--cccccCHHHHHHHhcccCCCC
Q 000790 854 EGTRKCIVATNIAETSLTVDG--IFYVIDTGYGKMKVYNPK----------MGMDAL--QVFPVSRAAADQRAGRAGRTG 919 (1283)
Q Consensus 854 ~G~rKVLVATnIAEtGIdIp~--V~~VIDsGl~K~~~yD~~----------~g~~~L--~~~PiS~as~~QRaGRAGR~g 919 (1283)
.+...||++|...-.|||+|| +..||-.++--..-=||. .|-+.+ ...|.....+.|-+||.=|..
T Consensus 802 ~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~ 881 (928)
T PRK08074 802 QFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTE 881 (928)
T ss_pred hcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccC
Confidence 888899999999999999997 477776665321100110 111111 123555667789999999988
Q ss_pred C--CEEEEe
Q 000790 920 P--GTCYRL 926 (1283)
Q Consensus 920 ~--G~cyrL 926 (1283)
. |..+.|
T Consensus 882 ~D~G~v~il 890 (928)
T PRK08074 882 TDRGTVFVL 890 (928)
T ss_pred CceEEEEEe
Confidence 4 776654
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=9.3e-09 Score=129.25 Aligned_cols=127 Identities=20% Similarity=0.133 Sum_probs=87.5
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 581 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 581 ~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
.++.|-+.++--+++-.+.=++--|....||-|||+++.++++-..+...+ |-|+.+..-||..-++.+...+ ..+|.
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gkg-VhVVTvNdYLA~RDae~m~~vy-~~LGL 155 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKG-VHVVTVNDYLARRDAEWMGQVH-RFLGL 155 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCC-eEEEeCCHHHHHhHHHHHHHHH-HHhCC
Confidence 345666666666688877777777999999999999988888777666444 4455577788877776664433 45788
Q ss_pred eeeEEEeeee----ccCCCceEEEechhHH-----HHHHccC---CCCCCCceEEEcCCCc
Q 000790 661 KVGYAIRFED----VTGPSTLIKYMTDGVL-----LRETLKD---SDLDKYRVIVMDEAHE 709 (1283)
Q Consensus 661 ~VGy~ir~e~----~~s~~t~I~~~T~G~L-----Lr~ll~d---~~L~~~s~IIIDEaHE 709 (1283)
+||+...... ...-.+.|+|+|+.-| ...+... .....+.+.|||||+.
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 8886543221 1123688999999876 3333322 2367788999999983
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.10 E-value=2.1e-09 Score=135.18 Aligned_cols=133 Identities=7% Similarity=0.005 Sum_probs=88.4
Q ss_pred EccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhc-cccCCeeeEEEeeee---------ccCCCc
Q 000790 607 VGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD-TELGDKVGYAIRFED---------VTGPST 676 (1283)
Q Consensus 607 ~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~-~~lG~~VGy~ir~e~---------~~s~~t 676 (1283)
.+-+|||||..++..+.+. +..++.+++++|...++.|+.+++...|+ .. .+.|.-.... ......
T Consensus 166 ~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~---v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 166 QALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAGD---VAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred hcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCCc---EEEECCCCCHHHHHHHHHHHhCCCC
Confidence 3346999999998866544 44577899999999999999999988776 22 2222221111 234557
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHH-HH---HHHHHHhcCCceEEEeccCcCHHHHHHHh
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLF-GI---LKKVVARRRDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll-~l---Lk~il~~r~dlklIlmSATld~e~fa~~f 749 (1283)
.|++.|-.-++ .-+.++++|||||-|+-++..+-.. .. +-.+.....+..+|+.|||+..+.+....
T Consensus 242 ~IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 242 RVVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred cEEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 78888865432 2378899999999997444433100 01 11222334688999999999998887644
No 144
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.09 E-value=3.4e-10 Score=131.38 Aligned_cols=299 Identities=17% Similarity=0.174 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHhC---CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeee
Q 000790 587 IFSVRDELLQVIREN---QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~---qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VG 663 (1283)
|.++|+..|..+..| +.-||+.|-|+|||++-.-.+ ..-.+.++|+.-.-+.+.|....+..-....-...+-
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 568999999988766 567999999999998632211 1113455666666777888877774332222223333
Q ss_pred EEEeeeeccCCCceEEEechhHHHHH---------HccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEE
Q 000790 664 YAIRFEDVTGPSTLIKYMTDGVLLRE---------TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLI 734 (1283)
Q Consensus 664 y~ir~e~~~s~~t~I~~~T~G~LLr~---------ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklI 734 (1283)
++....+....++-|++.|..|+... ++.--.-...+++||||+|- +-.-.+..+|..+.. ++ -+
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv--vPA~MFRRVlsiv~a---Hc-KL 452 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV--VPAKMFRRVLSIVQA---HC-KL 452 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc--chHHHHHHHHHHHHH---Hh-hc
Confidence 33322233345677888888876431 00001135689999999993 222222233333322 22 37
Q ss_pred EeccCc--CHHHHHH--HhCCCCeEe-------ecCcccc--eeeeecCCCh---hhHHHH-----------------HH
Q 000790 735 VTSATL--NAQKFSD--FFGSVPIFH-------IPGRTFP--VNTLYSKTPC---EDYVEA-----------------AV 781 (1283)
Q Consensus 735 lmSATl--d~e~fa~--~f~~~pvi~-------i~gr~~p--V~i~y~~~~~---~dyv~~-----------------~v 781 (1283)
+++||+ .-+++.+ |+-+..++. -.|..-. ....+.+... ..|+.. +.
T Consensus 453 GLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraC 532 (776)
T KOG1123|consen 453 GLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRAC 532 (776)
T ss_pred cceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHH
Confidence 899999 2223322 221111110 0011111 1112222111 123221 12
Q ss_pred HHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcC-CCeeEE
Q 000790 782 KQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE-GTRKCI 860 (1283)
Q Consensus 782 ~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~-G~rKVL 860 (1283)
.-++..|.. .+.+||||....-. |+++.- .+.--.+||..++.+|.+|++.|.- ..++-|
T Consensus 533 qfLI~~HE~-RgDKiIVFsDnvfA-------Lk~YAi-----------kl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 533 QFLIKFHER-RGDKIIVFSDNVFA-------LKEYAI-----------KLGKPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred HHHHHHHHh-cCCeEEEEeccHHH-------HHHHHH-----------HcCCceEECCCchhHHHHHHHhcccCCccceE
Confidence 223334433 46789999865432 333321 1222358999999999999999964 467889
Q ss_pred EecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-------CCEEEEecChhh
Q 000790 861 VATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-------PGTCYRLYTESA 931 (1283)
Q Consensus 861 VATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g-------~G~cyrLyt~~~ 931 (1283)
+-.-++.++||+|..++.|... . .--|.-+=.||.||.-|+. +...|.|.+++.
T Consensus 594 FlSKVgDtSiDLPEAnvLIQIS--------S---------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQIS--------S---------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred EEeeccCccccCCcccEEEEEc--------c---------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 9999999999999999999722 1 2346677789999988875 235666666544
No 145
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.07 E-value=3.4e-10 Score=103.01 Aligned_cols=72 Identities=36% Similarity=0.495 Sum_probs=67.4
Q ss_pred CeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHH
Q 000790 830 ELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAAD 909 (1283)
Q Consensus 830 ~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~ 909 (1283)
++.+..+||+++..+|..++..|..+..+|||+|+++++|+|++++.+||..+ .|.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~------------------~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD------------------LPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeC------------------CCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999844 488999999
Q ss_pred HHhcccCCCC
Q 000790 910 QRAGRAGRTG 919 (1283)
Q Consensus 910 QRaGRAGR~g 919 (1283)
|++||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.04 E-value=1.7e-07 Score=116.93 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchHHHHHHHHHHHH
Q 000790 592 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 592 ~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~LA~qvakrVa 651 (1283)
..+.+++.+++++++.|+||+|||.+++.+++..... .+.+|+|+.||++|+.|+.+.+.
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 4566777889999999999999999999988775543 35789999999999999997653
No 147
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.00 E-value=3.8e-08 Score=122.80 Aligned_cols=291 Identities=19% Similarity=0.181 Sum_probs=170.6
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccC--CCce
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG--PSTL 677 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s--~~t~ 677 (1283)
.+.+++|-+|.||||||++..||-+.......+|+++.-|+.|+.+++.++... + +...+-|.-....... +..+
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~--l~gFv~Y~d~~~~~i~~~~~~r 124 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-G--LSGFVNYLDSDDYIIDGRPYDR 124 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-C--CCcceeeeccccccccccccCe
Confidence 567899999999999999988887765455678999999999999999998542 1 1122222211111111 1234
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCc--CCc------chhHHHHHHHHHHHhcCCceEEEeccCcCH---HHHH
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHE--RSL------STDVLFGILKKVVARRRDFKLIVTSATLNA---QKFS 746 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHE--Rsl------~tD~ll~lLk~il~~r~dlklIlmSATld~---e~fa 746 (1283)
++++ -..|.+.. ...+.+|++|||||+-. ..+ +....+.+|+.++.. .-++|+|-||++. +-|+
T Consensus 125 Livq-IdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tvdFl~ 199 (824)
T PF02399_consen 125 LIVQ-IDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTVDFLA 199 (824)
T ss_pred EEEE-ehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHHHHHH
Confidence 4444 34444432 34688899999999862 001 112334455555543 3579999999963 4445
Q ss_pred HHhCCCCeEeecCc----cccee-eeecCCChhhHHH--------------------------------HHHHHHHHHhh
Q 000790 747 DFFGSVPIFHIPGR----TFPVN-TLYSKTPCEDYVE--------------------------------AAVKQAMTIHI 789 (1283)
Q Consensus 747 ~~f~~~pvi~i~gr----~~pV~-i~y~~~~~~dyv~--------------------------------~~v~~~l~i~~ 789 (1283)
.+-++.++..|.+. .|.-. ..+...-..+.+. ..+...+...+
T Consensus 200 ~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L 279 (824)
T PF02399_consen 200 SCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL 279 (824)
T ss_pred HhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH
Confidence 54455554433321 11100 0111100000000 01111111111
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecCccccc
Q 000790 790 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 869 (1283)
Q Consensus 790 ~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATnIAEtG 869 (1283)
..+..|-||+.+....+.+++..... ...|+.+.|.-+..+ |. . =+..+||+=|++...|
T Consensus 280 -~~gknIcvfsSt~~~~~~v~~~~~~~-------------~~~Vl~l~s~~~~~d---v~-~--W~~~~VviYT~~itvG 339 (824)
T PF02399_consen 280 -NAGKNICVFSSTVSFAEIVARFCARF-------------TKKVLVLNSTDKLED---VE-S--WKKYDVVIYTPVITVG 339 (824)
T ss_pred -hCCCcEEEEeChHHHHHHHHHHHHhc-------------CCeEEEEcCCCCccc---cc-c--ccceeEEEEeceEEEE
Confidence 23567888999888777776665432 556777887766552 22 2 3468999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChh
Q 000790 870 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTES 930 (1283)
Q Consensus 870 IdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~ 930 (1283)
|+++...+=--++++|... .-.+..+..|++||+-.......|.-+...
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~------------~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMS------------YGPDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred eccchhhceEEEEEecCCC------------CCCcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 9998654432222222111 124566789999999888877777666543
No 148
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.98 E-value=1.8e-07 Score=114.73 Aligned_cols=200 Identities=20% Similarity=0.256 Sum_probs=132.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCe--eEEEecCcccccC
Q 000790 793 PGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR--KCIVATNIAETSL 870 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~r--KVLVATnIAEtGI 870 (1283)
+..+|+|..++..+.-+-..|.. ..++.++-+-|..+...|..+++.|.++.. -.|++|-+...|+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~------------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGl 613 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR------------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGL 613 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh------------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccc
Confidence 34788998877766655555532 258999999999999999999999987653 4567899999999
Q ss_pred CCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhccchh
Q 000790 871 TVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLG 950 (1283)
Q Consensus 871 dIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~ 950 (1283)
|+-+.+-||- |||.-+ |.+-.++.-|+=|-|-...=.+|||.+....++... .-.|....|.
T Consensus 614 NLTgAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY---~rQI~Kq~Lt 675 (923)
T KOG0387|consen 614 NLTGANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY---HRQIFKQFLT 675 (923)
T ss_pred ccccCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH---HHHHHHHHHH
Confidence 9999998885 998653 666666777777777666788999998655432111 1245666677
Q ss_pred HHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcccccCCCCCHHHHHHHhCCCChHHHHHHHhhhhcCchHHHH
Q 000790 951 NVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVL 1030 (1283)
Q Consensus 951 ~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~Ll~~~~~gc~~e~l 1030 (1283)
+.+|.=+.. -.|+. .+-+..|..++--..+|.+|..|-...... .+.-+......-.++..
T Consensus 676 n~il~~p~q-------~RfF~-------~~dl~dLFsl~~~G~~~~~te~~~~~~~~~-----~~~~lk~~~~~~~~~~~ 736 (923)
T KOG0387|consen 676 NRILKNPEQ-------RRFFK-------GNDLHDLFSLKDFGDDGESTETSSKEVHRN-----EKVNLKRNSSIDFEEKE 736 (923)
T ss_pred HHHhcCHHH-------hhhcc-------cccHHHHhCCCCCCcCcchhhhhhhhhhhh-----HHHHHhhcccccchhhh
Confidence 766533221 11221 234666777776556788998888777665 22233333333344555
Q ss_pred HHHHHhcCCCc
Q 000790 1031 TIVSMLSVPSV 1041 (1283)
Q Consensus 1031 ~I~a~ls~~~~ 1041 (1283)
.|+++-..+..
T Consensus 737 ~l~~l~~~~~~ 747 (923)
T KOG0387|consen 737 DLLALSKHSEL 747 (923)
T ss_pred hhhhhcccccc
Confidence 56655444333
No 149
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.95 E-value=7.9e-08 Score=117.18 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=87.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCC---CeeEEEecCcccc
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG---TRKCIVATNIAET 868 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G---~rKVLVATnIAEt 868 (1283)
.+..||||- ..-.+...|..++. ..++..+-+-|+++.++|...++.|... +.-.+++|-+.+.
T Consensus 486 ~GhRVLIFS----Qmt~mLDILeDyc~---------~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 486 QGHRVLIFS----QMTRMLDILEDYCM---------LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred CCCeEEEeH----HHHHHHHHHHHHHH---------hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 355788884 23333344444321 2478899999999999999999999543 4567889999999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhh
Q 000790 869 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLN 934 (1283)
Q Consensus 869 GIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~ 934 (1283)
|||+-..+.||- ||+.- .|-.--++.+|+-|.|-..+=++|||+|+...++
T Consensus 553 GINL~aADtVIl--------yDSDW-------NPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 553 GINLTAADTVIL--------YDSDW-------NPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccccccEEEE--------ecCCC-------CchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 999999999996 87543 3556668889999999999999999999876543
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.84 E-value=1.8e-06 Score=110.48 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhc
Q 000790 774 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK 853 (1283)
Q Consensus 774 ~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~ 853 (1283)
..|.......+..+.. .+|.+|||+++....+.++..|.... ...+ ..++.. .+..+++.|+
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~------------~~~l-l~Q~~~---~~~~ll~~f~ 578 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL------------RLML-LVQGDQ---PRQRLLEKHK 578 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc------------CCcE-EEeCCc---hHHHHHHHHH
Confidence 3566666666666654 35559999999999999988886421 2222 234543 3455665554
Q ss_pred ----CCCeeEEEecCcccccCCCCC--eeEEEEcCCccceeccCC----------CCccccc--ccccCHHHHHHHhccc
Q 000790 854 ----EGTRKCIVATNIAETSLTVDG--IFYVIDTGYGKMKVYNPK----------MGMDALQ--VFPVSRAAADQRAGRA 915 (1283)
Q Consensus 854 ----~G~rKVLVATnIAEtGIdIp~--V~~VIDsGl~K~~~yD~~----------~g~~~L~--~~PiS~as~~QRaGRA 915 (1283)
.+...||++|..+..|||+|| +..||-.|+--...-||. .|-+.+. ..|.-...+.|-+||.
T Consensus 579 ~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRl 658 (697)
T PRK11747 579 KRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRL 658 (697)
T ss_pred HHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccc
Confidence 467789999999999999987 788887665422111221 1111111 1244445678999999
Q ss_pred CCCCC--CEEEEe
Q 000790 916 GRTGP--GTCYRL 926 (1283)
Q Consensus 916 GR~g~--G~cyrL 926 (1283)
=|... |..+.|
T Consensus 659 IRs~~D~G~i~il 671 (697)
T PRK11747 659 IRSEQDRGRVTIL 671 (697)
T ss_pred cccCCceEEEEEE
Confidence 99873 776655
No 151
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.80 E-value=2.8e-07 Score=115.46 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=68.5
Q ss_pred CeEEEEecCCCCHHHHHHHHhHhcC--CC-eeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 000790 830 ELLILPIYSQLPADLQAKIFEKAKE--GT-RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 906 (1283)
Q Consensus 830 ~l~Il~LHs~L~~~er~~I~~~f~~--G~-rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~a 906 (1283)
++.++.|||.|+..+|+.+.+.|.+ +. .-.+++|-+.+.||++-|...||- ||+ ...++
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~----------dWNPa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDP----------DWNPA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCC----------CCCch
Confidence 8899999999999999999999954 33 335557778899999999998886 884 45667
Q ss_pred HHHHHhcccCCCC---CCEEEEecChhhh
Q 000790 907 AADQRAGRAGRTG---PGTCYRLYTESAY 932 (1283)
Q Consensus 907 s~~QRaGRAGR~g---~G~cyrLyt~~~~ 932 (1283)
.=.|-++||-|.| +-..|+|.+....
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCCCc
Confidence 7778888888888 5888999875543
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=9.8e-07 Score=113.24 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred eEEEeccCc-CHHHHHHHhCCC-CeEeecCcccc-----------------eeeeecCCChhhHHHHHHHHHHHHhhcCC
Q 000790 732 KLIVTSATL-NAQKFSDFFGSV-PIFHIPGRTFP-----------------VNTLYSKTPCEDYVEAAVKQAMTIHITSP 792 (1283)
Q Consensus 732 klIlmSATl-d~e~fa~~f~~~-pvi~i~gr~~p-----------------V~i~y~~~~~~dyv~~~v~~~l~i~~~~~ 792 (1283)
.+|++|||| ..+.|...+|-. +.....+..+| +...|.......++......+..+.. .-
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~-~~ 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSK-II 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhh-cC
Confidence 578999999 567788777632 11111111112 11122222223455555444444433 34
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHH--HHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcC----CCeeEEEec--C
Q 000790 793 PGDILIFMTGQDEIEAACFALKER--MEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE----GTRKCIVAT--N 864 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~--l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~----G~rKVLVAT--n 864 (1283)
+|.+|||+|+....+.+...+.+. +..+. ....+.+-+ .+. .+...+++.|.. +.--||+|+ .
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~-----~~k~i~~E~--~~~--~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIE-----KKKLIFVET--KDA--QETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHh-----cCCCEEEeC--CCc--chHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 688999999999999988877642 11110 001122212 111 456778888843 455699999 8
Q ss_pred cccccCCCCC--eeEEEEcCCccceeccCCC--------------CcccccccccCHHHHHHHhcccCCCCC--CEEEEe
Q 000790 865 IAETSLTVDG--IFYVIDTGYGKMKVYNPKM--------------GMDALQVFPVSRAAADQRAGRAGRTGP--GTCYRL 926 (1283)
Q Consensus 865 IAEtGIdIp~--V~~VIDsGl~K~~~yD~~~--------------g~~~L~~~PiS~as~~QRaGRAGR~g~--G~cyrL 926 (1283)
.+..|||++| .+.||-.|+--....||.. |..... .....-...|-+||+=|... |..+.|
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 8999999987 6888888875432223211 110011 11223466799999999985 554443
No 153
>COG4889 Predicted helicase [General function prediction only]
Probab=98.74 E-value=3.7e-08 Score=120.41 Aligned_cols=313 Identities=18% Similarity=0.200 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHhC----CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccC---
Q 000790 587 IFSVRDELLQVIREN----QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG--- 659 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~----qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG--- 659 (1283)
+.++|+.++++..++ ..-=++...|+|||...+.. .+..- ..+|++++|...|..|..+....+-...+-
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala--~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALA--AARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHh--hhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 447888888877543 33334455699999887653 33332 268999999999999988877654332221
Q ss_pred ----CeeeEE---Eeeeec-------------------cCCCceEEEechhHHHHHHc-cCCCCCCCceEEEcCCCcCCc
Q 000790 660 ----DKVGYA---IRFEDV-------------------TGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSL 712 (1283)
Q Consensus 660 ----~~VGy~---ir~e~~-------------------~s~~t~I~~~T~G~LLr~ll-~d~~L~~~s~IIIDEaHERsl 712 (1283)
..|+-+ +.+.+. ...+--|+|+|...|.+.-- ....+..+++||.|||| |+.
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH-RTt 317 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH-RTT 317 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-ccc
Confidence 111110 111110 01134578888888776532 34568999999999999 544
Q ss_pred chhH------HHHHHHHHHHhcCCceEEEeccCcCH--HHHHH----------------HhCCCCeEeecCc--------
Q 000790 713 STDV------LFGILKKVVARRRDFKLIVTSATLNA--QKFSD----------------FFGSVPIFHIPGR-------- 760 (1283)
Q Consensus 713 ~tD~------ll~lLk~il~~r~dlklIlmSATld~--e~fa~----------------~f~~~pvi~i~gr-------- 760 (1283)
..-+ .+..+..- ..-+..|-+.|+||+-. +.... .|| |.|+--|.
T Consensus 318 Ga~~a~dd~saFt~vHs~-~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG--eef~rl~FgeAv~rdl 394 (1518)
T COG4889 318 GATLAGDDKSAFTRVHSD-QNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG--EEFHRLGFGEAVERDL 394 (1518)
T ss_pred cceecccCcccceeecCc-chhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc--hhhhcccHHHHHHhhh
Confidence 3211 00000000 00012355778888721 10000 111 01100000
Q ss_pred --ccceeeeecC-------------CChhhHHHHHHHHHHHHhh------------cC------CCCCEEEEcCCHHHHH
Q 000790 761 --TFPVNTLYSK-------------TPCEDYVEAAVKQAMTIHI------------TS------PPGDILIFMTGQDEIE 807 (1283)
Q Consensus 761 --~~pV~i~y~~-------------~~~~dyv~~~v~~~l~i~~------------~~------~~G~ILVFl~g~~eIe 807 (1283)
.|.|-+.-.. .+........+..++-++. .. +....+-||.+.+.-.
T Consensus 395 LTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK 474 (1518)
T COG4889 395 LTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSK 474 (1518)
T ss_pred hccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHH
Confidence 0111111110 0000000011111111111 00 1123567887777766
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeE--EEEecCCCCHHHHHHHHh---HhcCCCeeEEEecCcccccCCCCCeeEEEEcC
Q 000790 808 AACFALKERMEQLISSTTREVPELL--ILPIYSQLPADLQAKIFE---KAKEGTRKCIVATNIAETSLTVDGIFYVIDTG 882 (1283)
Q Consensus 808 ~l~~~L~e~l~~l~~~~~~~~~~l~--Il~LHs~L~~~er~~I~~---~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsG 882 (1283)
.++..+...++........+..++. |-.+.|.|..-+|...+. .|++..+|||----.+..|||+|.++-||-
T Consensus 475 ~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF-- 552 (1518)
T COG4889 475 QIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF-- 552 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--
Confidence 6666655444333222222234444 445568899888865543 457789999988889999999999999995
Q ss_pred CccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEE
Q 000790 883 YGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCY 924 (1283)
Q Consensus 883 l~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cy 924 (1283)
|||+. |.-..+|-+||..|..+|+-|
T Consensus 553 ------f~pr~----------smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 553 ------FDPRS----------SMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ------ecCch----------hHHHHHHHHHHHHHhCcCCcc
Confidence 88654 456889999999999887643
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.73 E-value=2.6e-06 Score=108.56 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcC
Q 000790 775 DYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE 854 (1283)
Q Consensus 775 dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~ 854 (1283)
.+.......+..+. ...+|.+|||+|+....+.+.+.+.... ....+..++..+.+ .+++.|..
T Consensus 462 ~~~~~~~~~i~~~~-~~~~~~~lvlF~Sy~~l~~~~~~~~~~~------------~~~~v~~q~~~~~~---~~l~~f~~ 525 (654)
T COG1199 462 ELLAKLAAYLREIL-KASPGGVLVLFPSYEYLKRVAERLKDER------------STLPVLTQGEDERE---ELLEKFKA 525 (654)
T ss_pred HHHHHHHHHHHHHH-hhcCCCEEEEeccHHHHHHHHHHHhhcC------------ccceeeecCCCcHH---HHHHHHHH
Confidence 34444444444333 3446799999999999988888775421 11345566666655 45555544
Q ss_pred CCe-eEEEecCcccccCCCCCe--eEEEEcCCccceecc----------CCCCcc--cccccccCHHHHHHHhcccCCCC
Q 000790 855 GTR-KCIVATNIAETSLTVDGI--FYVIDTGYGKMKVYN----------PKMGMD--ALQVFPVSRAAADQRAGRAGRTG 919 (1283)
Q Consensus 855 G~r-KVLVATnIAEtGIdIp~V--~~VIDsGl~K~~~yD----------~~~g~~--~L~~~PiS~as~~QRaGRAGR~g 919 (1283)
+.- -++|+|..+..|||+++= ..||-.|+--...-| .+.|.. .....|.....+.|-+||+=|.-
T Consensus 526 ~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~ 605 (654)
T COG1199 526 SGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSE 605 (654)
T ss_pred hcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccC
Confidence 433 899999999999999865 566665654332211 122211 12334566678889999999976
Q ss_pred C--CEEEEe
Q 000790 920 P--GTCYRL 926 (1283)
Q Consensus 920 ~--G~cyrL 926 (1283)
. |.++.|
T Consensus 606 ~D~G~ivll 614 (654)
T COG1199 606 DDRGVIVLL 614 (654)
T ss_pred CCceEEEEe
Confidence 3 777766
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=7.7e-07 Score=113.39 Aligned_cols=120 Identities=20% Similarity=0.133 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
+-.|.+| ++-.+.=++--|....||=|||+++.++++-..+...+.-+||+- --||.-=++.+...+ ..+|.+||+
T Consensus 168 m~~yDVQ--liGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVN-DYLA~RDaewmgply-~fLGLsvg~ 243 (1112)
T PRK12901 168 MVHYDVQ--LIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVN-DYLAKRDSEWMGPLY-EFHGLSVDC 243 (1112)
T ss_pred CcccchH--HhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEec-hhhhhccHHHHHHHH-HHhCCceee
Confidence 3344554 676666667779999999999999888887777776666666654 334433333332222 347888885
Q ss_pred EEeee-e----ccCCCceEEEechhHHHHHHccC--------CCCCCCceEEEcCCC
Q 000790 665 AIRFE-D----VTGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 708 (1283)
Q Consensus 665 ~ir~e-~----~~s~~t~I~~~T~G~LLr~ll~d--------~~L~~~s~IIIDEaH 708 (1283)
..... + ...-.+.|+|+|+.-|---.+.| .....+.+.|||||+
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 43311 1 11236789999987543222221 225668899999988
No 156
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.56 E-value=3.4e-06 Score=107.71 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=94.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcC---CCeeEEEecCccc
Q 000790 791 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE---GTRKCIVATNIAE 867 (1283)
Q Consensus 791 ~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~---G~rKVLVATnIAE 867 (1283)
..+..||||-. ...+...|.++|.. -++..--|-|+++.+.|+.+++.|.. .....|+||-+.+
T Consensus 697 ~~GHrVLIFSQ----MVRmLDIL~eYL~~---------r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 697 EGGHRVLIFSQ----MVRMLDILAEYLSL---------RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cCCceEEEhHH----HHHHHHHHHHHHHH---------cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 45678999963 33444555555432 27778889999999999999999943 4567899999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCCCcchhhcc
Q 000790 868 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRT 947 (1283)
Q Consensus 868 tGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~ 947 (1283)
.|||+-..+.||- ||+.- .|-.--++.-|+-|.|-...=.+|||.|+..|+.+|.+-. =+..
T Consensus 764 LGINLatADTVII--------FDSDW-------NPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~Km 825 (1373)
T KOG0384|consen 764 LGINLATADTVII--------FDSDW-------NPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKM 825 (1373)
T ss_pred ccccccccceEEE--------eCCCC-------CcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHh
Confidence 9999999998885 87432 1333334444555555544578999999999877553211 1234
Q ss_pred chhHHHHHHhh
Q 000790 948 NLGNVVLLLKS 958 (1283)
Q Consensus 948 ~L~~vvL~Lk~ 958 (1283)
-|+.+||+.-.
T Consensus 826 vLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 826 VLDHAVIQRMD 836 (1373)
T ss_pred hhHHHHHHhhc
Confidence 56777776644
No 157
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.56 E-value=1.1e-05 Score=94.81 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCC--CeeEEEecCccccc
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG--TRKCIVATNIAETS 869 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G--~rKVLVATnIAEtG 869 (1283)
++-+.|||+.-+.-.+.+...+.++ ++..+-+.|..++..|....+.|... ..--|++-..+.+|
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r-------------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvG 557 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKR-------------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVG 557 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHc-------------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccc
Confidence 4567888888777666666666543 66677788999999999999998543 34456677889999
Q ss_pred CCCCCeeEEEE
Q 000790 870 LTVDGIFYVID 880 (1283)
Q Consensus 870 IdIp~V~~VID 880 (1283)
||+.....||-
T Consensus 558 Lt~tAa~~VVF 568 (689)
T KOG1000|consen 558 LTLTAASVVVF 568 (689)
T ss_pred eeeeccceEEE
Confidence 99999999984
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.05 E-value=0.00096 Score=80.45 Aligned_cols=230 Identities=15% Similarity=0.083 Sum_probs=145.1
Q ss_pred CceEEEechhHHHHHHcc------C-CCCCCCceEEEcCCCc-CCcchhHHHHHHHHHHHhcC-----------------
Q 000790 675 STLIKYMTDGVLLRETLK------D-SDLDKYRVIVMDEAHE-RSLSTDVLFGILKKVVARRR----------------- 729 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~------d-~~L~~~s~IIIDEaHE-Rsl~tD~ll~lLk~il~~r~----------------- 729 (1283)
++.|++++|=-|-..+-. + ..|+.+.++|||-||- -+.|-+.+..++..+-....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 678999998655444432 1 2389999999999994 34455666666655432211
Q ss_pred ----CceEEEeccCcCHHHHH---HHhCC----CCe-------EeecCcccceeeeecCCChhhH-------HHHHHHHH
Q 000790 730 ----DFKLIVTSATLNAQKFS---DFFGS----VPI-------FHIPGRTFPVNTLYSKTPCEDY-------VEAAVKQA 784 (1283)
Q Consensus 730 ----dlklIlmSATld~e~fa---~~f~~----~pv-------i~i~gr~~pV~i~y~~~~~~dy-------v~~~v~~~ 784 (1283)
-.|.|++|+..+++..+ .++.| ..+ ..+..-..++...|...++.+. +.-..+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 15899999999765332 22222 111 1122223445555554333221 22223334
Q ss_pred HHHhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEec
Q 000790 785 MTIHI-TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVAT 863 (1283)
Q Consensus 785 l~i~~-~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVAT 863 (1283)
+.... ....+.+|||+|+--+--.+-..|.+ .++..+.+|--.+..+-.++-..|-.|..+||+-|
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~-------------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T 357 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK-------------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYT 357 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHh-------------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEE
Confidence 43333 55678899999999887777776653 36777888877888888888899999999999999
Q ss_pred Cccc--ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCC----CCCCEEEEecChhhh
Q 000790 864 NIAE--TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGR----TGPGTCYRLYTESAY 932 (1283)
Q Consensus 864 nIAE--tGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR----~g~G~cyrLyt~~~~ 932 (1283)
-=+- .=..|.||..||-+|+ ...|.-..+++...+.... .+...|..||++-+.
T Consensus 358 ER~HFfrRy~irGi~~viFY~~---------------P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGP---------------PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hHHhhhhhceecCCcEEEEECC---------------CCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 6332 4457889999997553 2234444455555544432 225899999998665
No 159
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.02 E-value=2.4e-05 Score=85.17 Aligned_cols=123 Identities=24% Similarity=0.292 Sum_probs=81.1
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCC--EEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNG--IVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 679 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~--~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 679 (1283)
++++++||||+||||.+.......... +. .++++-..|+.|.++.+.+++.++..+- .....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~----------~~~~~----- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFY----------VARTE----- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEE----------ESSTT-----
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccc----------hhhcc-----
Confidence 478999999999999987766554444 33 3556677899999999999988875421 00000
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCcCH
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNA 742 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATld~ 742 (1283)
..+..++...+.....+++++|+||-+. |+.....++.-|+.+... .+.-.+++||||...
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 0123333333222223568999999998 777666666666666554 566788999999943
No 160
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.00 E-value=0.00053 Score=88.18 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=83.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCC-CeeEEE-ecCcccccC
Q 000790 793 PGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-TRKCIV-ATNIAETSL 870 (1283)
Q Consensus 793 ~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G-~rKVLV-ATnIAEtGI 870 (1283)
...|||||.=+..++-+...|.+. ..+.+..+-|-|+.++.+|.+|...|.++ .+.||+ +|-+.+-|+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~----------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGL 1409 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK----------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGL 1409 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh----------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecccccc
Confidence 357999998887777766655432 34677788999999999999999999887 777765 778999999
Q ss_pred CCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhh
Q 000790 871 TVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLN 934 (1283)
Q Consensus 871 dIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~ 934 (1283)
|+-|.+.||- ++..- .|.---+++-|+-|.|-..-=-+|||+|+...++
T Consensus 1410 NLTGADTVVF--------vEHDW-------NPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1410 NLTGADTVVF--------VEHDW-------NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred ccCCCceEEE--------EecCC-------CchhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 9999999994 32111 1322233444444444443466899999876543
No 161
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.99 E-value=2e-05 Score=85.66 Aligned_cols=122 Identities=25% Similarity=0.249 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhC--CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 588 FSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~--qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
.+-|.+++..+..+ +.++|.|+.|+|||+.+-. +.+.....+..|+++.|+..++..+.+.+ +.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~~----~~--------- 68 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREKT----GI--------- 68 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHHH----TS---------
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHhh----Cc---------
Confidence 45688888888644 4889999999999997543 44443344568999999999988776653 10
Q ss_pred EeeeeccCCCceEEEechhHHHHHHcc-----CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 666 IRFEDVTGPSTLIKYMTDGVLLRETLK-----DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 666 ir~e~~~s~~t~I~~~T~G~LLr~ll~-----d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
...|-..++..... .+.+...++||||||- +++...+..++..+.. .+.++|++-=+-
T Consensus 69 -------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 69 -------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp --------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred -------------chhhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 11121112111110 0116677899999997 4666555555554432 357888776554
No 162
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.97 E-value=5.7e-06 Score=82.79 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=65.1
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHHHhccc-----CCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccC
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLLEDGYT-----TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG 673 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-----~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s 673 (1283)
.+++.++|+|++|+|||+.+-.++...... ....+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999987776654211 23345565665555566777777766644322
Q ss_pred CCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 674 PSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 674 ~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
-.+...+...+...-.-....+|||||||.-. ....+..|+.+.. ...+++|++.-+
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 12222233222111111122689999999521 3555666666655 667777766544
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00012 Score=92.69 Aligned_cols=125 Identities=19% Similarity=0.095 Sum_probs=79.6
Q ss_pred HhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 582 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
+..|-.+++--+++-.+.-+.--|.-.-||=|||+.+.++++=..+...+.-++|+- -=||.--+..+...+ ..+|.+
T Consensus 74 ~Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvN-dYLA~RDae~m~~l~-~~LGls 151 (822)
T COG0653 74 KRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVN-DYLARRDAEWMGPLY-EFLGLS 151 (822)
T ss_pred HHhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeeh-HHhhhhCHHHHHHHH-HHcCCc
Confidence 344555566667888888888889999999999999888877776765665556543 333333333332222 357888
Q ss_pred eeEEEeeeecc----CCCceEEEechhHHH-----HHHc---cCCCCCCCceEEEcCCC
Q 000790 662 VGYAIRFEDVT----GPSTLIKYMTDGVLL-----RETL---KDSDLDKYRVIVMDEAH 708 (1283)
Q Consensus 662 VGy~ir~e~~~----s~~t~I~~~T~G~LL-----r~ll---~d~~L~~~s~IIIDEaH 708 (1283)
||..+.+-... .-.+.|.|.|+.-|= .-+. .+..+..+.+.|+||++
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 88776665322 225789999987541 1111 11224557777777777
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.96 E-value=2.9e-05 Score=88.37 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=69.9
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHH--hcccCC--CEEEEecchHHHHHHHHHHHHHHhcc-ccCCeeeEEEeee-----
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLE--DGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDT-ELGDKVGYAIRFE----- 669 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle--~~~~~~--~~Il~tqPrR~LA~qvakrVa~e~~~-~lG~~VGy~ir~e----- 669 (1283)
..+..|+.-++|+|||.++..++.. ...... ..++|++|. .+..+....+...... .+ ..+-|. ...
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~-~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYD-GDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEES-SSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-cccccc-cccccccc
Confidence 4578899999999999987766542 111111 258888999 5666777777554432 12 112111 111
Q ss_pred -eccCCCceEEEechhHHH-----HHHccCCCCCCCceEEEcCCCcC-CcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 670 -DVTGPSTLIKYMTDGVLL-----RETLKDSDLDKYRVIVMDEAHER-SLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 670 -~~~s~~t~I~~~T~G~LL-----r~ll~d~~L~~~s~IIIDEaHER-sl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
........++++|...+. ... ....--++++|||||+|.- +..+. ....+.. .. ....+++|||+
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~-~~l~~~~~~~vIvDEaH~~k~~~s~-~~~~l~~---l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDK-EDLKQIKWDRVIVDEAHRLKNKDSK-RYKALRK---LR-ARYRWLLSGTP 172 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTT-HHHHTSEEEEEEETTGGGGTTTTSH-HHHHHHC---CC-ECEEEEE-SS-
T ss_pred cccccccceeeeccccccccccccccc-cccccccceeEEEeccccccccccc-ccccccc---cc-cceEEeecccc
Confidence 122345778999998887 110 0000134899999999952 23332 2222222 22 55778899998
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.92 E-value=0.00046 Score=91.25 Aligned_cols=127 Identities=22% Similarity=0.155 Sum_probs=82.2
Q ss_pred CeEEEEccCCCChHHHHHH---HHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeee-------c
Q 000790 602 QVVVVVGETGSGKTTQLTQ---YLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED-------V 671 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q---~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~-------~ 671 (1283)
+.-+|.--||||||+.... .|++. .....|++++-|+.|-.|+...++...... .... +.++ .
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~-~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA-FNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhh-hhcc----cccCHHHHHHHH
Confidence 4589999999999987433 33343 346789999999999999998885432211 1100 1111 1
Q ss_pred cCCCceEEEechhHHHHHHccCC--CCCC-CceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 672 TGPSTLIKYMTDGVLLRETLKDS--DLDK-YRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 672 ~s~~t~I~~~T~G~LLr~ll~d~--~L~~-~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
......|+++|-.-|-....... .+.+ ==+||+|||| |+..... -..++.. .++...+++|.|+
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~-~~~~~~~---~~~a~~~gFTGTP 413 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGEL-AKLLKKA---LKKAIFIGFTGTP 413 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHH-HHHHHHH---hccceEEEeeCCc
Confidence 12356899999887766554431 1222 2378999999 8877653 3344443 3458899999999
No 166
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.91 E-value=0.00024 Score=83.99 Aligned_cols=128 Identities=24% Similarity=0.261 Sum_probs=89.6
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHHHhc-ccCCCEEE-E-ecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCC
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIVG-C-TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 675 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Lle~~-~~~~~~Il-~-tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~ 675 (1283)
.++++++++||||.||||.+........ .....+|. + +=-.|+.|..+-+..++.|++.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-----------------
Confidence 3489999999999999998766544443 22233333 3 33568989888888888887653
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC-ceEEEeccCcCHHHHHHHh
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD-FKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d-lklIlmSATld~e~fa~~f 749 (1283)
.++-++.-|...+. .|.++++|.||=+- |+..-...+.-|+.+.....+ --.+++|||...+.+...+
T Consensus 264 --~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 264 --EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred --EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 22344555554442 37889999999999 888777888888888765544 4567899999666555544
No 167
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.86 E-value=8.7e-06 Score=102.81 Aligned_cols=230 Identities=17% Similarity=0.206 Sum_probs=139.1
Q ss_pred hcCCCHHHHHHHHHHHHh----------------CCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchHHHHHH
Q 000790 583 QYLPIFSVRDELLQVIRE----------------NQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMS 645 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~----------------~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~LA~q 645 (1283)
..||+...+...++.+.. +.++++-+|||+|||..+...+...... .+.+++++.|..+|+..
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 456666666666655543 2457788999999999988877665433 24689999999999998
Q ss_pred HHHHHHHHhccccCCeeeEEE---eeeeccCCCceEEEechhHHH---HHHccCCCCCCCceEEEcCCCcCCcchhHHHH
Q 000790 646 VAKRVSEEMDTELGDKVGYAI---RFEDVTGPSTLIKYMTDGVLL---RETLKDSDLDKYRVIVMDEAHERSLSTDVLFG 719 (1283)
Q Consensus 646 vakrVa~e~~~~lG~~VGy~i---r~e~~~s~~t~I~~~T~G~LL---r~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~ 719 (1283)
.+.+....+... |..++-.. .-+-..-.++.|++.|+.... |.+.....+.+++.+|+||.|.-+-+-.-.+.
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle 1067 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLE 1067 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEE
Confidence 888876665544 44432100 000012235778889887654 33445566889999999999963333211111
Q ss_pred HHHHHH-----HhcCCceEEEeccCc-CHHHHHHHhCCCCeEee--cCcccceeeeecCCChhhHHHHH---HHHHH-HH
Q 000790 720 ILKKVV-----ARRRDFKLIVTSATL-NAQKFSDFFGSVPIFHI--PGRTFPVNTLYSKTPCEDYVEAA---VKQAM-TI 787 (1283)
Q Consensus 720 lLk~il-----~~r~dlklIlmSATl-d~e~fa~~f~~~pvi~i--~gr~~pV~i~y~~~~~~dyv~~~---v~~~l-~i 787 (1283)
++.... ...+.++++++|--+ |+..+++|++-.+.+.. .-+..|.+.++...|..-|.... -+-++ .+
T Consensus 1068 ~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qai 1147 (1230)
T KOG0952|consen 1068 VIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAI 1147 (1230)
T ss_pred EEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHH
Confidence 111111 123346777776555 89999999986655333 34556666666655543332211 11111 22
Q ss_pred hhcCCCCCEEEEcCCHHHHHHHHHHH
Q 000790 788 HITSPPGDILIFMTGQDEIEAACFAL 813 (1283)
Q Consensus 788 ~~~~~~G~ILVFl~g~~eIe~l~~~L 813 (1283)
....|..++|||+.++......+..|
T Consensus 1148 k~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1148 KTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred hcCCCCCceEEEeecccccccchHhH
Confidence 33456788999998876554444333
No 168
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00015 Score=86.65 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=77.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcc---cCCCEE--EEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCC
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGY---TTNGIV--GCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 675 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~---~~~~~I--l~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~ 675 (1283)
.++++++||||+||||.+......... ..+..| +.+=+.|..|....+.+++.++..+ .+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KA------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Ee-------------
Confidence 468999999999999997665443221 123333 3445778888877776666555432 00
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCC-ceEEEeccCcCHHHHHHHhC
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRD-FKLIVTSATLNAQKFSDFFG 750 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~d-lklIlmSATld~e~fa~~f~ 750 (1283)
..+...+...+. .+.++++||||++. |+......+.-++.++.. .++ -.++++|||.....+.+.|.
T Consensus 239 ----~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 239 ----IESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred ----eCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 112223333221 25689999999999 665433344455555543 333 47899999997666665543
No 169
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00027 Score=83.66 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=75.7
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEE--ecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 678 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~--tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I 678 (1283)
.++++++||||+||||.+....... ...+..|++ +=|.|+.+.+..+..++.++.. + +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L-~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip----v---------------~ 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE----V---------------I 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc----E---------------E
Confidence 3688999999999999876654432 223334433 3366776665555444433321 1 1
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCcC---HHHHHHHhCC
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLN---AQKFSDFFGS 751 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATld---~e~fa~~f~~ 751 (1283)
...++..+.+.+..-....++++||||-+- |+....-++.-|..++. ..|+-.++++|||.. ...+.+.|..
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC
Confidence 122455554443221112368999999998 55555555555555553 456666788999984 3445555543
No 170
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.75 E-value=0.0036 Score=81.12 Aligned_cols=123 Identities=22% Similarity=0.176 Sum_probs=80.2
Q ss_pred cCCCHHHHHHHHHHHHh-CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 584 YLPIFSVRDELLQVIRE-NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~-~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
...+.+-|.+++..+.. +++++|+|++|+||||.+-. +.+.....+..|+++.|+-.+|..+.+ ..+..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~~g~~V~~~ApTg~Aa~~L~~----~~g~~----- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEAAGYRVIGAALSGKAAEGLQA----ESGIE----- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHhCCCeEEEEeCcHHHHHHHHh----ccCCc-----
Confidence 45678999999998877 58999999999999987544 333323335678899999887755432 11110
Q ss_pred eEEEeeeeccCCCceEEEechhHHHHHHcc-CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 663 GYAIRFEDVTGPSTLIKYMTDGVLLRETLK-DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 663 Gy~ir~e~~~s~~t~I~~~T~G~LLr~ll~-d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
-.|-..++..+.. ...+...++||||||- +++...+..+++.... ...+||++-
T Consensus 420 -----------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 -----------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred -----------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 0122222221211 2336788999999997 5777766666665432 467787776
No 171
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.72 E-value=0.0026 Score=79.33 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHhHhcCC--CeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 000790 829 PELLILPIYSQLPADLQAKIFEKAKEG--TRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 906 (1283)
Q Consensus 829 ~~l~Il~LHs~L~~~er~~I~~~f~~G--~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~a 906 (1283)
.++..+-|-|+.+-..|+.+++.|... ..-+|++|-..+-|||+-..+.||- || .-..|..--
T Consensus 800 l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi--------hD-------~dFNP~dD~ 864 (941)
T KOG0389|consen 800 LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII--------HD-------IDFNPYDDK 864 (941)
T ss_pred cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE--------ee-------cCCCCcccc
Confidence 478899999999999999999999654 3567889999999999999999985 54 122366677
Q ss_pred HHHHHhcccCCCCCCEEEEecChhhhhh
Q 000790 907 AADQRAGRAGRTGPGTCYRLYTESAYLN 934 (1283)
Q Consensus 907 s~~QRaGRAGR~g~G~cyrLyt~~~~~~ 934 (1283)
++.-|+-|.|-+.|=.+|+|+|+...++
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 8888999999999999999999877644
No 172
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.68 E-value=0.0052 Score=81.06 Aligned_cols=127 Identities=20% Similarity=0.144 Sum_probs=82.8
Q ss_pred hcCCCHHHHHHHHHHHHh-CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 583 QYLPIFSVRDELLQVIRE-NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~-~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
..+.+.+-|.+++..+.. +++++|+|..|+||||.+ ..+.+.....+..|+.+.|+-.+|..+.. ..|..
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~tGi~---- 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLEG----GSGIA---- 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHhh----ccCcc----
Confidence 457788999999998887 568899999999999974 33444333345678889999888755432 11110
Q ss_pred eeEEEeeeeccCCCceEEEechhHHHHHHc-cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 662 VGYAIRFEDVTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 662 VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll-~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
-.|-..|+..+. ....+...++||||||- ++++..+..+|+.+. ....+||++-=+-
T Consensus 414 ------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~~ 471 (988)
T PRK13889 414 ------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDPQ 471 (988)
T ss_pred ------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCHH
Confidence 012222222111 12346678999999997 677777777766543 3467888876543
No 173
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.67 E-value=0.00026 Score=88.84 Aligned_cols=136 Identities=19% Similarity=0.225 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHH--hcccC--CCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLE--DGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle--~~~~~--~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
..|..++..+..++++||.|++|+||||.+...+.. ..... ...|+++.||--+|..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 688889999999999999999999999986554322 11111 24799999999998887776644321 11100
Q ss_pred EEeeeeccCCCceEEEechhHHHHHHc-------cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 665 AIRFEDVTGPSTLIKYMTDGVLLRETL-------KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 665 ~ir~e~~~s~~t~I~~~T~G~LLr~ll-------~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
........+...|-..||.... .......+++||||||= +++...+..+++. ..++.++|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 0000000111233333322111 01123368999999996 6776665555553 35677887764
Q ss_pred c
Q 000790 738 A 738 (1283)
Q Consensus 738 A 738 (1283)
=
T Consensus 294 D 294 (586)
T TIGR01447 294 D 294 (586)
T ss_pred C
Confidence 3
No 174
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0003 Score=83.55 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-CEEEEe--cchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCC
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 674 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~t--qPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~ 674 (1283)
+..+.+++++||||+||||.+...........+ .+|+++ -+.|+.+.+..+.+++.++..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~---------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV---------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce----------------
Confidence 456889999999999999998776554433322 244332 2446667766666666555321
Q ss_pred CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCcCHHH
Q 000790 675 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQK 744 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATld~e~ 744 (1283)
..+.+.+-+...+. .+.++++|+||.+- +....+.+...+..+... .+.-.++++|||...+.
T Consensus 198 ---~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 198 ---HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ---EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 11223333333221 25678999999998 555555666666665432 34557899999995443
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=0.00053 Score=83.11 Aligned_cols=130 Identities=25% Similarity=0.269 Sum_probs=75.9
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHHHhc-ccCCCEEE--EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCC
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 675 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Lle~~-~~~~~~Il--~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~ 675 (1283)
..+++++++||||+||||.+..+..... ...+.+|+ -+-|.|..+.......+..++..+ .
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----------~------ 282 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------E------ 282 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce----------E------
Confidence 3467999999999999998776555443 22233443 334667777666666555444221 0
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-h-cCCceEEEeccCcCHHHH---HHHhC
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-R-RRDFKLIVTSATLNAQKF---SDFFG 750 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~-r~dlklIlmSATld~e~f---a~~f~ 750 (1283)
...++.-+...+. .+.++++||||.+- +.....-.+..|..++. . .+.-.++++|||.....+ ...|.
T Consensus 283 ---~~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 283 ---VVYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred ---ccCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 1122333333332 24578999999997 44333334444555544 2 344568889999965444 44554
Q ss_pred C
Q 000790 751 S 751 (1283)
Q Consensus 751 ~ 751 (1283)
.
T Consensus 356 ~ 356 (424)
T PRK05703 356 R 356 (424)
T ss_pred C
Confidence 3
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.65 E-value=0.00021 Score=78.20 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEecchH
Q 000790 586 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRR 640 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR 640 (1283)
|....|..+++++.+++.+++.||.|||||+.+....++.... ...+|+++-|.-
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 6678899999999999999999999999999987777665443 234788887764
No 177
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.61 E-value=0.00039 Score=89.57 Aligned_cols=129 Identities=21% Similarity=0.192 Sum_probs=81.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC--CEEEEecchHHHHHHHHHHHHHHhccc
Q 000790 580 EQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTE 657 (1283)
Q Consensus 580 ~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~LA~qvakrVa~e~~~~ 657 (1283)
+......+.+-|.+++..+..+++++|.|++|+||||.+-.. ++.....+ ..|+++.||--+|..+. +..|..
T Consensus 317 ~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i-~~~~~~~~~~~~v~l~ApTg~AA~~L~----e~~g~~ 391 (720)
T TIGR01448 317 EKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAI-IELAEELGGLLPVGLAAPTGRAAKRLG----EVTGLT 391 (720)
T ss_pred HHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHH-HHHHHHcCCCceEEEEeCchHHHHHHH----HhcCCc
Confidence 334557788999999999999999999999999999976432 22222223 46888899988886443 322211
Q ss_pred cCCeeeEEEeeeeccCCCceEEEechhHHHHHHc------cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCc
Q 000790 658 LGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETL------KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDF 731 (1283)
Q Consensus 658 lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll------~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dl 731 (1283)
-.|-..|+.... ........++||||||+ +++...+..+++. ..++.
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~ 444 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHA 444 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCC
Confidence 011111211100 00112457899999999 5677666666653 34678
Q ss_pred eEEEeccCc
Q 000790 732 KLIVTSATL 740 (1283)
Q Consensus 732 klIlmSATl 740 (1283)
++|++-=+-
T Consensus 445 rlilvGD~~ 453 (720)
T TIGR01448 445 RLLLVGDTD 453 (720)
T ss_pred EEEEECccc
Confidence 888876543
No 178
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.61 E-value=0.00029 Score=88.70 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHh---cccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEE
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED---GYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 665 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~---~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ 665 (1283)
..|.+++.....++.+||.|++|+||||.+...+... .......|+++.||.-+|..+.+.+...+. .++.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~----- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL----- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc-----
Confidence 6899999999999999999999999999865544321 111234788999999999888877644221 1110
Q ss_pred EeeeeccCCCceEEEechhHHHHHHcc-------CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 666 IRFEDVTGPSTLIKYMTDGVLLRETLK-------DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 666 ir~e~~~s~~t~I~~~T~G~LLr~ll~-------d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
.+...........|-..||..... ....-.+++|||||+- +++...+..+++. ..++.++|++-=
T Consensus 229 ---~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvGD 300 (615)
T PRK10875 229 ---TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLGD 300 (615)
T ss_pred ---chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEecc
Confidence 000000000011222222221110 1123357899999997 5676666666654 356788888754
Q ss_pred C
Q 000790 739 T 739 (1283)
Q Consensus 739 T 739 (1283)
.
T Consensus 301 ~ 301 (615)
T PRK10875 301 R 301 (615)
T ss_pred h
Confidence 3
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.00016 Score=81.39 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHH
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRV 641 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~ 641 (1283)
-|....|..++.++.++..+++.||+|||||+.+..+.++..... -.+|+++-|.-.
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 466788999999999999999999999999999877777654332 346777767643
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.58 E-value=0.00021 Score=84.56 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=60.0
Q ss_pred CeEEEEccCCCChHHHHHHHHHHh-cccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLED-GYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 680 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~-~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 680 (1283)
+++||.|..|||||+.+...+.+. ....+..++++.+...+...+.+.++.... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 578999999999998877655554 133455677888888888888777755330 00111223
Q ss_pred echhHHHHHHc-cCCCCCCCceEEEcCCCcCCcc
Q 000790 681 MTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLS 713 (1283)
Q Consensus 681 ~T~G~LLr~ll-~d~~L~~~s~IIIDEaHERsl~ 713 (1283)
.....++..+. .......+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 33333333322 33457889999999999 4433
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.00083 Score=66.82 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHHHHHHHh--CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecc
Q 000790 592 DELLQVIRE--NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQP 638 (1283)
Q Consensus 592 ~eil~~I~~--~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqP 638 (1283)
..+...+.. ++.++|.||+|+|||+.+-.. .......+..++++..
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i-~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAI-ANELFRPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHH-HHHhhcCCCCeEEEeh
Confidence 344555555 789999999999999865443 3332222344555443
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.54 E-value=0.00022 Score=65.94 Aligned_cols=54 Identities=30% Similarity=0.334 Sum_probs=42.4
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHHhccc---CCCEEEEecchHHHHHHHHHHH
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~LA~qvakrV 650 (1283)
++..+..++|.||+|||||+.+...+.+.... .+..|+|+.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 55557788889999999998776665554321 1568999999999999998888
No 183
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.001 Score=79.66 Aligned_cols=129 Identities=23% Similarity=0.222 Sum_probs=78.5
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEE--EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il--~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
.+.+++++||||+||||++..+........+.+|+ -+-+.|.++....++.++.++..+ +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~-----~------------- 283 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-----Y------------- 283 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----e-------------
Confidence 35678999999999999988877654333344443 345778888887777766554321 0
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh----cCCceEEEeccCcC---HHHHHHHhC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR----RRDFKLIVTSATLN---AQKFSDFFG 750 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~----r~dlklIlmSATld---~e~fa~~f~ 750 (1283)
.+.....+...+. -.++++||||=+. |.....-.+.-|..++.. .+.-.++++|||.. ...+..+|.
T Consensus 284 -~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 284 -PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred -ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 0001122333332 2578999999877 554434444445554432 23457899999994 455566665
Q ss_pred CC
Q 000790 751 SV 752 (1283)
Q Consensus 751 ~~ 752 (1283)
..
T Consensus 358 ~~ 359 (432)
T PRK12724 358 SL 359 (432)
T ss_pred CC
Confidence 43
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.49 E-value=0.0002 Score=86.99 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhC-CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHH
Q 000790 588 FSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~-qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa 651 (1283)
.+.|.+++.....+ ..++|.||+|+|||+.+...|.... ..+.+|+|+.|+.+++..+..|+.
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-KQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-HcCCeEEEEcCchHHHHHHHHHhc
Confidence 36788888888777 6678899999999998777555543 446899999999999999988753
No 185
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0013 Score=77.80 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=77.2
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEE--EEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIV--GCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~I--l~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
..+++++++||||+||||.+....... ...+..| +.+-|.|..|...-+..++.++.. +
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l-~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp----v-------------- 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL-LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE----L-------------- 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC----E--------------
Confidence 457899999999999999876655432 2223333 334477877766555554543321 1
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCcCHHHHHHHh
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATld~e~fa~~f 749 (1283)
....++.-|...+..-....++++||||=+- |+....-++.-|+.+.. ..++.-++++|||.....+.+++
T Consensus 265 -~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 -IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 0112344443333211223578999999997 55554555555555553 35666778899988655555543
No 186
>PRK06526 transposase; Provisional
Probab=97.44 E-value=0.00043 Score=78.40 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 596 QVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 596 ~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
+.+..+.+++++||+|+|||+.+.....+. ...+..|+++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH-HHCCCchhhh
Confidence 345678899999999999998765543332 2334455553
No 187
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.33 E-value=0.032 Score=74.33 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=83.1
Q ss_pred cCCCHHHHHHHHHHHH-hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCee
Q 000790 584 YLPIFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 662 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~-~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~V 662 (1283)
...+.+-|.+++..+. .+++++|+|+.|+||||.+-. +.+.....+..|+.+.|+-.+|..+. +..|..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~----- 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEAAGYRVVGGALAGKAAEGLE----KEAGIQ----- 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEEcCcHHHHHHHH----HhhCCC-----
Confidence 4678899999999874 578999999999999998644 33332234567888899988875553 222211
Q ss_pred eEEEeeeeccCCCceEEEechhHH-HHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 663 GYAIRFEDVTGPSTLIKYMTDGVL-LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 663 Gy~ir~e~~~s~~t~I~~~T~G~L-Lr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
-.|-..+ ++.-.....|..-++||||||. ++++..+..+|+.+. ..+.+||++.=+-
T Consensus 449 -----------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~~ 506 (1102)
T PRK13826 449 -----------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDPE 506 (1102)
T ss_pred -----------------eeeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCHH
Confidence 0111222 2211122346777899999998 678877777776654 2467888876543
No 188
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0024 Score=76.53 Aligned_cols=325 Identities=17% Similarity=0.170 Sum_probs=181.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCeEEEE-ccCCCCh--HHHHHHHHHHhccc---------------------------
Q 000790 579 AEQRQYLPIFSVRDELLQVIRENQVVVVV-GETGSGK--TTQLTQYLLEDGYT--------------------------- 628 (1283)
Q Consensus 579 ~~~R~~LPi~~~Q~eil~~I~~~qvvII~-gpTGSGK--Ttqi~q~Lle~~~~--------------------------- 628 (1283)
..+....|+.+.|.+++....+-++++.. +.-+.|+ +..+.+.++.+.+.
T Consensus 209 ~~~K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frD 288 (698)
T KOG2340|consen 209 VDQKKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRD 288 (698)
T ss_pred ccccccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhh
Confidence 34678899999999999999999987763 2224455 22344444443221
Q ss_pred ---CCCEEEEecchHHHHHHHHHHHHHH-hccccCCe-eeEEEeeeecc-------------------------------
Q 000790 629 ---TNGIVGCTQPRRVAAMSVAKRVSEE-MDTELGDK-VGYAIRFEDVT------------------------------- 672 (1283)
Q Consensus 629 ---~~~~Il~tqPrR~LA~qvakrVa~e-~~~~lG~~-VGy~ir~e~~~------------------------------- 672 (1283)
..++|++++|+|+.|..+...+... .|..-|.. |.-.-+|++..
T Consensus 289 QG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~Fri 368 (698)
T KOG2340|consen 289 QGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRI 368 (698)
T ss_pred cCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhh
Confidence 0357999999999999998887666 34332221 11011111100
Q ss_pred --------------CCCceEEEechhHHHHHHccC--------CCCCCCceEEEcCCCc-CCcchhHHHHHHHHHHHhcC
Q 000790 673 --------------GPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAHE-RSLSTDVLFGILKKVVARRR 729 (1283)
Q Consensus 673 --------------s~~t~I~~~T~G~LLr~ll~d--------~~L~~~s~IIIDEaHE-Rsl~tD~ll~lLk~il~~r~ 729 (1283)
--...|++|+|=-| ++++.+ ..|+.+.++|||-||- -..+-..++.++..+-....
T Consensus 369 Gl~ftkKtikLys~fy~SDIlVaSPLGL-Rmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~ 447 (698)
T KOG2340|consen 369 GLAFTKKTIKLYSKFYKSDILVASPLGL-RMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPS 447 (698)
T ss_pred hHHHHHHHHHHHhhhcccCeEEecchhh-hhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcc
Confidence 01567889988543 444442 2388999999999993 12222334444433322111
Q ss_pred C---------------------ceEEEeccCcCHH---HHHHHhCC----C---CeE---eecCcccceeeeecCCChh-
Q 000790 730 D---------------------FKLIVTSATLNAQ---KFSDFFGS----V---PIF---HIPGRTFPVNTLYSKTPCE- 774 (1283)
Q Consensus 730 d---------------------lklIlmSATld~e---~fa~~f~~----~---pvi---~i~gr~~pV~i~y~~~~~~- 774 (1283)
+ .|++++|+-.++. .|..+..+ + ++. .|..-.+|+...|....+.
T Consensus 448 k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~s 527 (698)
T KOG2340|consen 448 KQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKS 527 (698)
T ss_pred cccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccC
Confidence 1 2455566554322 12222211 1 111 1112224444433332211
Q ss_pred -----h-HHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHH
Q 000790 775 -----D-YVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKI 848 (1283)
Q Consensus 775 -----d-yv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I 848 (1283)
| .+.-.+..++--........|||+.|+--+--.+-..+.+. .+....+|---+...-.++
T Consensus 528 i~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e-------------~i~F~~i~EYssk~~vsRA 594 (698)
T KOG2340|consen 528 IIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE-------------EISFVMINEYSSKSKVSRA 594 (698)
T ss_pred cccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh-------------hcchHHHhhhhhHhhhhHH
Confidence 1 11222233332222233456999999988877776666543 2222222221222222334
Q ss_pred HhHhcCCCeeEEEecCccc--ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-----C
Q 000790 849 FEKAKEGTRKCIVATNIAE--TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-----G 921 (1283)
Q Consensus 849 ~~~f~~G~rKVLVATnIAE--tGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~-----G 921 (1283)
-+-|-.|...|++-|--+- +--+|.||+-||- |.|.+ .|.-..+.+.+.+|+--.|. -
T Consensus 595 R~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf--------YqpP~-------~P~FYsEiinm~~k~~~~gn~d~d~~ 659 (698)
T KOG2340|consen 595 RELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF--------YQPPN-------NPHFYSEIINMSDKTTSQGNTDLDIF 659 (698)
T ss_pred HHHHHhcCceEEEEehhhhhhhhheecceeeEEE--------ecCCC-------CcHHHHHHHhhhhhhhccCCccccce
Confidence 4557788999999987543 5678999999996 55433 57778889999988865552 4
Q ss_pred EEEEecChhhh
Q 000790 922 TCYRLYTESAY 932 (1283)
Q Consensus 922 ~cyrLyt~~~~ 932 (1283)
.|-.||++-+-
T Consensus 660 t~~ilytKyD~ 670 (698)
T KOG2340|consen 660 TVRILYTKYDR 670 (698)
T ss_pred EEEEEeechhh
Confidence 79999998654
No 189
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.29 E-value=0.00068 Score=86.03 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=67.3
Q ss_pred CeEEEEecCCCCHHHHHHHHhHhcC---CCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 000790 830 ELLILPIYSQLPADLQAKIFEKAKE---GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 906 (1283)
Q Consensus 830 ~l~Il~LHs~L~~~er~~I~~~f~~---G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~a 906 (1283)
.+..+-+-|....++|-..+..|.. .....|++|-....|+|+--.+.||- ||+. ..+-
T Consensus 750 ~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii--------fdsd----------wnp~ 811 (1157)
T KOG0386|consen 750 EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII--------FDSD----------WNPH 811 (1157)
T ss_pred hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE--------ecCC----------CCch
Confidence 6677888999999998888777743 45788999999999999998888885 7743 3344
Q ss_pred HHHHHhcccCCCC---CCEEEEecChhhhhhh
Q 000790 907 AADQRAGRAGRTG---PGTCYRLYTESAYLNE 935 (1283)
Q Consensus 907 s~~QRaGRAGR~g---~G~cyrLyt~~~~~~~ 935 (1283)
...|+.-||-|.| .-.+++|.+-..+.+.
T Consensus 812 ~d~qaqdrahrigq~~evRv~rl~tv~sveE~ 843 (1157)
T KOG0386|consen 812 QDLQAQDRAHRIGQKKEVRVLRLITVNSVEEK 843 (1157)
T ss_pred hHHHHHHHHHHhhchhheeeeeeehhhHHHHH
Confidence 5677777776666 4778899887766543
No 190
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.29 E-value=0.057 Score=76.63 Aligned_cols=247 Identities=14% Similarity=0.137 Sum_probs=133.6
Q ss_pred cCCCHHHHHHHHHHHHhC--CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 584 YLPIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~--qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
.+++.+-|.+++..+..+ +++||.|+.|+||||.+-. +.+.....+..|+++.|+--+|..+.+.+ +..- .+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~-l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A-~T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQL-LLHLASEQGYEIQIITAGSLSAQELRQKI----PRLA-ST 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchh-hh
Confidence 467888999999988775 8999999999999997533 33333334668889999998876665432 2110 00
Q ss_pred eeEEEeeeec-cCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 662 VGYAIRFEDV-TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 662 VGy~ir~e~~-~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+. ++-.. ... ....|-..|+ -.+..|...++||||||- ++++..+..+|+.+. ..+.|||++-=+-
T Consensus 501 i~---~~l~~l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~~ 567 (1960)
T TIGR02760 501 FI---TWVKNLFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDSA 567 (1960)
T ss_pred HH---HHHHhhccc---ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcChh
Confidence 00 00000 000 0011222222 123345678999999998 678877777777653 3467888876554
Q ss_pred C------HHHHHHHh-CCCCeEeecCc-ccceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 000790 741 N------AQKFSDFF-GSVPIFHIPGR-TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 812 (1283)
Q Consensus 741 d------~e~fa~~f-~~~pvi~i~gr-~~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~ 812 (1283)
. -..|..+. .+.+.+.+... .....+........+.+.......+.+ .......+||.++..++..+...
T Consensus 568 QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L--~~~r~~tliv~~t~~dr~~Ln~~ 645 (1960)
T TIGR02760 568 QRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDL--TPDRQNSQVLATTHREQQDLTQI 645 (1960)
T ss_pred hcCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHHHHHHHHhc--ccccCceEEEcCCcHHHHHHHHH
Confidence 1 12333222 23454443221 011111111111112222333333322 22344689999999999999999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEec-CCCCHHHHHHHHhHhcCC
Q 000790 813 LKERMEQLISSTTREVPELLILPIY-SQLPADLQAKIFEKAKEG 855 (1283)
Q Consensus 813 L~e~l~~l~~~~~~~~~~l~Il~LH-s~L~~~er~~I~~~f~~G 855 (1283)
++..|..... -......+..|- ..|+..++... ..|+.|
T Consensus 646 iR~~L~~~G~---L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 646 IRNALKQEGQ---LSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHcCC---cCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9887753211 111233444443 24555555433 444444
No 191
>PRK14974 cell division protein FtsY; Provisional
Probab=97.26 E-value=0.0019 Score=75.92 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=69.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec--chHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ--PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 678 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq--PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I 678 (1283)
..+++++|++|+||||.+...... ....+..|+++. +.|..|....+..+..++..+-. . ....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~-l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~-------~--~~g~---- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY-LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK-------H--KYGA---- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec-------c--cCCC----
Confidence 468899999999999986554432 222234554433 45676665555565655533210 0 0000
Q ss_pred EEech-hHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc
Q 000790 679 KYMTD-GVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 740 (1283)
Q Consensus 679 ~~~T~-G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl 740 (1283)
.+ .++...+ ......++++||||.++ |.....-++.-|+.+.. ..|+..+++++||.
T Consensus 206 ---dp~~v~~~ai-~~~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 206 ---DPAAVAYDAI-EHAKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred ---CHHHHHHHHH-HHHHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence 01 1111111 11123468899999999 66544445555566543 46888999999998
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00099 Score=65.43 Aligned_cols=39 Identities=33% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchH
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRR 640 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR 640 (1283)
++.++|+||+||||||.+...+...... ...++++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEE
Confidence 5789999999999999886655443322 22345544443
No 193
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.22 E-value=0.00078 Score=73.42 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCe-EEEEccCCCChHHHHHHHHHHh-------cccCCCEEEEecchHHHHHHHHHHHHH
Q 000790 588 FSVRDELLQVIRENQV-VVVVGETGSGKTTQLTQYLLED-------GYTTNGIVGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qv-vII~gpTGSGKTtqi~q~Lle~-------~~~~~~~Il~tqPrR~LA~qvakrVa~ 652 (1283)
.+.|.+++..+..+.. ++|.||+|+|||+.+...+... ....+..|+++.|+..++..+..++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4678999999988887 9999999999998876655554 134567899999999999999999865
No 194
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.20 E-value=0.0027 Score=82.63 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=77.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHH-----HHhccccC-CeeeEEEeeeec--
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVS-----EEMDTELG-DKVGYAIRFEDV-- 671 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa-----~e~~~~lG-~~VGy~ir~e~~-- 671 (1283)
+.++.+..+||+|||.+++..|++....- ..+++|++|+.+.-..+.+-+. ..|....+ ..+-+.+--...
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 46899999999999998877766643321 2478899999888776665543 22222222 223322211100
Q ss_pred -------c--------C-----CCceEEEechhHHHHHHcc-CC-----------C---CCCC-ceEEEcCCCcCCcchh
Q 000790 672 -------T--------G-----PSTLIKYMTDGVLLRETLK-DS-----------D---LDKY-RVIVMDEAHERSLSTD 715 (1283)
Q Consensus 672 -------~--------s-----~~t~I~~~T~G~LLr~ll~-d~-----------~---L~~~-s~IIIDEaHERsl~tD 715 (1283)
. + ..-.|+++|.++|-..... .. . +... -+|||||.|.-.- ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 0 0 1357889999988553221 00 0 1111 3799999994211 11
Q ss_pred HHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 716 VLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 716 ~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
- -...+...+|.+ ++.+|||.+
T Consensus 218 k---~~~~i~~lnpl~-~lrysAT~~ 239 (986)
T PRK15483 218 K---FYQAIEALKPQM-IIRFGATFP 239 (986)
T ss_pred H---HHHHHHhcCccc-EEEEeeecC
Confidence 1 123444556655 566999994
No 195
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0028 Score=80.98 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=79.4
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCC-CEEEE-e-cchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGC-T-QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~-t-qPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
.+++++++||||+||||.+...........+ .+|.+ + -+.|+.+....+.+++.++..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------ 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------ 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc------------------
Confidence 4679999999999999987665543322223 24443 2 2457777666666666554321
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCcCHHHHH
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNAQKFS 746 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATld~e~fa 746 (1283)
..+.++..+...+. .+.++++||||=+- |+....-+...+..+.. ..+.-.++++|||...+.|.
T Consensus 246 -~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 -HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 01124555544332 36678999999998 66655556677776653 45667889999998655444
No 196
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.0047 Score=70.60 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=61.1
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
.+..+++++++||+|+|||..+.....+ ....+..|+++ +...|...+.... ..
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~-a~~~g~~v~f~-~~~~L~~~l~~a~----~~-------------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLA-LIENGWRVLFT-RTTDLVQKLQVAR----RE-------------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHH-HHHcCCceeee-eHHHHHHHHHHHH----hC--------------------
Confidence 3557889999999999999765443322 22334456554 2233333332110 00
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcch---hHHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHhCC
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGS 751 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~t---D~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f~~ 751 (1283)
.+...++.. +.++++|||||++.-.... ..++.++..... ... ++++.-+....+...|++
T Consensus 156 ----~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~~s-~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 156 ----LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE---RRS-ILITANQPFGEWNRVFPD 219 (269)
T ss_pred ----CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---CCC-EEEEcCCCHHHHHHhcCC
Confidence 011112222 4578999999998533322 234444443322 233 445555566667776654
No 197
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.16 E-value=0.0017 Score=73.80 Aligned_cols=129 Identities=17% Similarity=0.079 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhcc
Q 000790 577 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT 656 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~ 656 (1283)
+....-..+..+..|--.+=++..|+ |+...||=|||+++.++.+-..+. +..|-|+.....||..=++.+...+ .
T Consensus 68 ea~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-G~~V~vvT~NdyLA~RD~~~~~~~y-~ 143 (266)
T PF07517_consen 68 EAARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-GKGVHVVTSNDYLAKRDAEEMRPFY-E 143 (266)
T ss_dssp HHHHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-SS-EEEEESSHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-cCCcEEEeccHHHhhccHHHHHHHH-H
Confidence 33333344455555544444444444 999999999999987766655554 3445555567788877777765444 3
Q ss_pred ccCCeeeEEEeeeecc----CCCceEEEechhHHHHHHccC--------CCCCCCceEEEcCCCc
Q 000790 657 ELGDKVGYAIRFEDVT----GPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAHE 709 (1283)
Q Consensus 657 ~lG~~VGy~ir~e~~~----s~~t~I~~~T~G~LLr~ll~d--------~~L~~~s~IIIDEaHE 709 (1283)
.+|..||+........ .-...|+|+|.+.|..-.+.+ .....+.++|||||+.
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred HhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 6888898765543321 113679999998776433322 1257889999999983
No 198
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0027 Score=78.05 Aligned_cols=126 Identities=23% Similarity=0.261 Sum_probs=69.4
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEE--ecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccC
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG 673 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~--tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s 673 (1283)
.+..+++++|+||||+||||.+........... +..|.+ +-+.|..+....+..... +|..+ .
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i----Lgv~v----~------ 411 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ----LGIAV----H------ 411 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc----cCcee----E------
Confidence 355789999999999999998765544322221 223333 335576665444333222 22111 1
Q ss_pred CCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHHHH
Q 000790 674 PSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKF 745 (1283)
Q Consensus 674 ~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e~f 745 (1283)
...+.+.|...+. .+.++++||||.+- ++.....+...|..+........+++++++.....+
T Consensus 412 -----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl 474 (559)
T PRK12727 412 -----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDL 474 (559)
T ss_pred -----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHH
Confidence 0112333333332 24679999999998 443333444444444433445678889998854433
No 199
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.004 Score=75.19 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=77.7
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHHHhcccC---CCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCC
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLLEDGYTT---NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 675 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~---~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~ 675 (1283)
..+.++.++||||+||||.+........... ...++..-..|+.+.+....+++.+|..+ .+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~--~~------------- 253 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV--RS------------- 253 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce--ec-------------
Confidence 4678999999999999999765543322111 12334445567777777666666554321 00
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCcCHH---HHHHHhCC
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQ---KFSDFFGS 751 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATld~e---~fa~~f~~ 751 (1283)
+-+..-+...+. .+.++++|+||.+- |......+...|+.+.... +.-.++++|||...+ .+..+|..
T Consensus 254 ----v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~ 325 (420)
T PRK14721 254 ----IKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG 325 (420)
T ss_pred ----CCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC
Confidence 111222222221 26788999999986 5555455666777665433 345678899998544 44445543
No 200
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.09 E-value=0.0032 Score=69.86 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=88.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh---CCeEEEEccCCCChHHHHHHHHHHhcccCC-CEEEEecchHHHHHHHHHHHHHH
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRE---NQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCTQPRRVAAMSVAKRVSEE 653 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~---~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~tqPrR~LA~qvakrVa~e 653 (1283)
+.+....+=|.+.|.++...+.+ +.+.+...-.|.|||+++.-.+.- .+..+ ..+.+++| +.|..|...-+...
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~-~LAdg~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLAL-ALADGSRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHH-HHcCCCcEEEEEcC-HHHHHHHHHHHHHH
Confidence 56677788899999999988876 478999999999999987554433 33334 35556677 56888888888777
Q ss_pred hccccCCeeeEEEeeeeccC-----------------CCceEEEechhHHHHHHcc------CC-------------CCC
Q 000790 654 MDTELGDKVGYAIRFEDVTG-----------------PSTLIKYMTDGVLLRETLK------DS-------------DLD 697 (1283)
Q Consensus 654 ~~~~lG~~VGy~ir~e~~~s-----------------~~t~I~~~T~G~LLr~ll~------d~-------------~L~ 697 (1283)
++.-++..| |.+.|...+. ...-|+++||+.++-..+. +. .|.
T Consensus 93 lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~ 171 (229)
T PF12340_consen 93 LGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD 171 (229)
T ss_pred HHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 776666655 5666665322 2445888999876542211 10 144
Q ss_pred CCceEEEcCCCc
Q 000790 698 KYRVIVMDEAHE 709 (1283)
Q Consensus 698 ~~s~IIIDEaHE 709 (1283)
+...=|+||+|+
T Consensus 172 ~~~rdilDEsDe 183 (229)
T PF12340_consen 172 EHSRDILDESDE 183 (229)
T ss_pred hcCCeEeECchh
Confidence 556678888884
No 201
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.0047 Score=75.71 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=73.5
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCC-EEE--EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG-IVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~-~Il--~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
.+++++++||||+||||.+...........+. +|. ..-+.|+.+.+..+.+++.++..+. +
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~-------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--A-------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--c--------------
Confidence 57899999999999999977655433223222 333 3346678887777777666653210 0
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCcCHHH---HHHHhCC
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQK---FSDFFGS 751 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATld~e~---fa~~f~~ 751 (1283)
.-+..-+...+ ..|.++++++||.+- |+.....+...+..+.... +.-.+++++||..... +..+|..
T Consensus 319 ---~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~ 390 (484)
T PRK06995 319 ---VKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG 390 (484)
T ss_pred ---cCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc
Confidence 00111122222 246778999999986 5543333333333332221 3347899999995544 4444543
No 202
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0039 Score=67.56 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=60.1
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecch---HHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR---RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr---R~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
+..++++||+|+||||.+..++..... .+.+++++-|. +.....+ +. .+|..+ . .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~i----~~----~lg~~~------~-------~ 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGKV----VS----RIGLSR------E-------A 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCcE----ec----CCCCcc------c-------c
Confidence 467899999999999999888776543 35577776552 2111111 11 111100 0 0
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
+.+.....++..+.. .-.++++|||||+|. +..+.+..+++.+. ..+..+|++.-.
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq~--l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQF--LDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEcccc--CCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 122333444444433 345789999999983 33343444444432 234555554433
No 203
>PF05729 NACHT: NACHT domain
Probab=96.99 E-value=0.0028 Score=65.40 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=39.9
Q ss_pred eEEEcCCCcCCcchh-----HHHHHHHHHHHh--cCCceEEEeccCcCHHHHHHHhCCCCeEeecC
Q 000790 701 VIVMDEAHERSLSTD-----VLFGILKKVVAR--RRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 759 (1283)
Q Consensus 701 ~IIIDEaHERsl~tD-----~ll~lLk~il~~--r~dlklIlmSATld~e~fa~~f~~~pvi~i~g 759 (1283)
+||||=++|-..... .+..++..++.. .+++++|++|.+-....+..++.....+.+.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 588888887444322 245556666554 77899999998877777888877665555544
No 204
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.97 E-value=0.0017 Score=74.92 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=48.4
Q ss_pred CCHHHHHH----HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-----CEEEEecchHHHHHHHHHHH
Q 000790 586 PIFSVRDE----LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 586 Pi~~~Q~e----il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~tqPrR~LA~qvakrV 650 (1283)
+.++.|.+ +...+..+.++||.+|||+|||+.++.+++......+ .+|+++.++..+..++...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 34788887 5566778999999999999999998877765433222 27888889988876665444
No 205
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.97 E-value=0.0017 Score=74.92 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=48.4
Q ss_pred CCHHHHHH----HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-----CEEEEecchHHHHHHHHHHH
Q 000790 586 PIFSVRDE----LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 586 Pi~~~Q~e----il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~tqPrR~LA~qvakrV 650 (1283)
+.++.|.+ +...+..+.++||.+|||+|||+.++.+++......+ .+|+++.++..+..++...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 34788887 5566778999999999999999998877765433222 27888889988876665444
No 206
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.90 E-value=0.0096 Score=69.75 Aligned_cols=125 Identities=22% Similarity=0.225 Sum_probs=71.0
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe-c-chHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT-Q-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t-q-PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
.+++++++||+|+||||.+........ ..++.|+++ . +.|..|.+.....+...+. ++... . ....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~--~~~d-- 180 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-K--EGAD-- 180 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-C--CCCC--
Confidence 467899999999999998665443322 234455443 2 4576665555555444431 21111 0 0000
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-------hcCCceEEEeccCcCH
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-------RRRDFKLIVTSATLNA 742 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-------~r~dlklIlmSATld~ 742 (1283)
+.......+......+|++||||=+. |....+.++..|+.+.. ..|+-.+++++||...
T Consensus 181 -----pa~~v~~~l~~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 181 -----PASVAFDAIQAAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred -----HHHHHHHHHHHHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 11111111111124679999999998 66666666666666543 2466789999999843
No 207
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.012 Score=67.44 Aligned_cols=130 Identities=17% Similarity=0.242 Sum_probs=69.3
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEE--ecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~--tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
.+..++++|++|+||||.+....... ...+..+++ +-+.|+.+.+..+..+..++ +.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--------~~~~---------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------FEVI---------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhhhcC--------ceEE----------
Confidence 45899999999999999866544332 222333333 33555444433333323222 1110
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHH-HhcCCceEEEeccCcC---HHHHHHHhC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVV-ARRRDFKLIVTSATLN---AQKFSDFFG 750 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il-~~r~dlklIlmSATld---~e~fa~~f~ 750 (1283)
...++.-+...+..-....++++||||-+- |.....-++.-+..++ ...|+..++++|||.. ...+.+.|.
T Consensus 135 -~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 135 -AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred -ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 011233333222111123468999999997 5554444444444444 3456667889999984 334445554
No 208
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.82 E-value=0.0034 Score=74.81 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHHHHH------HhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHH
Q 000790 589 SVRDELLQVI------RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSV 646 (1283)
Q Consensus 589 ~~Q~eil~~I------~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qv 646 (1283)
+-|..+++.+ .++.++.|.|+-|+|||+.+-.+ .......+..++++.||-++|..+
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i-~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAI-IDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHH-HHHhccccceEEEecchHHHHHhc
Confidence 3455555555 67889999999999999886443 333333456899999999999776
No 209
>PF13173 AAA_14: AAA domain
Probab=96.80 E-value=0.0065 Score=61.41 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.4
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhc
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDG 626 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~ 626 (1283)
++++++|.||.|+||||.+-+++.+..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999888765543
No 210
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.79 E-value=0.033 Score=70.05 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=89.5
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccC---------CeeeE-----
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG---------DKVGY----- 664 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG---------~~VGy----- 664 (1283)
...+..|+.+|=|.|||+.+..++.......+..|+++.|...-+.++.+++...+. .+| ..+..
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le-~lg~~~~fp~~~~iv~vkgg~E 263 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVH-AYQHKPWFPEEFKIVTLKGTDE 263 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHH-HhccccccCCCceEEEeeCCee
Confidence 345778889999999999876555433322356899999999999999888766554 111 11110
Q ss_pred EEeeeeccC---CCceEEEechhHHHHHHccCCC-CCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 665 AIRFEDVTG---PSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 665 ~ir~e~~~s---~~t~I~~~T~G~LLr~ll~d~~-L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.+..... ..+.|.|++.+ .+.. -..+++||||||+. +..+++..++--+.. .+-++|++|-+-
T Consensus 264 ~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~IiISS~~ 332 (752)
T PHA03333 264 NLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQIHISSPV 332 (752)
T ss_pred EEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceEEEeCCC
Confidence 112211111 11455555433 1111 13578999999994 555666666555543 367899999998
Q ss_pred CHHHHHHHhCC
Q 000790 741 NAQKFSDFFGS 751 (1283)
Q Consensus 741 d~e~fa~~f~~ 751 (1283)
+.+.+-.++++
T Consensus 333 ~~~s~tS~L~n 343 (752)
T PHA03333 333 DADSWISRVGE 343 (752)
T ss_pred CcchHHHHhhh
Confidence 88888877765
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.017 Score=65.16 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=63.8
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEEe
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYM 681 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~ 681 (1283)
..+++.|++|+|||+.+...+.+ ....+..++|+ +...+ ...+...+.. . -.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~-l~~~g~~v~~i-t~~~l----~~~l~~~~~~-----------------~-----~~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE-LLLRGKSVLII-TVADI----MSAMKDTFSN-----------------S-----ET 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHhcCCeEEEE-EHHHH----HHHHHHHHhh-----------------c-----cc
Confidence 58999999999999876543333 33334556655 22222 2222221110 0 01
Q ss_pred chhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCcCHHHHHHHhCC
Q 000790 682 TDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQKFSDFFGS 751 (1283)
Q Consensus 682 T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATld~e~fa~~f~~ 751 (1283)
+...++.. +.++++|||||++.-. .+++-..+|-.++..| .+.+-+++|--++.+.+.+++++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 12223332 5578999999999533 5666555666665543 22344555555667777766653
No 212
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.64 E-value=0.0032 Score=72.12 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHH---HhcccCCCEEEEecchHHHHHHHHHHHHHHhcc
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLL---EDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT 656 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Ll---e~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~ 656 (1283)
.+-|.+++.. .++.++|.|..|||||+++..-++ .........|+|+.+|+.+|..+..++...++.
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 3557777777 688999999999999998765443 333222457999999999999999999876653
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.62 E-value=0.0062 Score=68.88 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=19.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLE 624 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle 624 (1283)
...++|+||+|+||||.+-.++-.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 347999999999999987665433
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.60 E-value=0.02 Score=65.62 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=69.6
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe--cchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
..++++++|++|+||||.+....... ...+.+|+++ =+.|..+....+.+++.++.. + + ... ...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~----~-~--~~~--~~~d-- 138 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD----V-I--KQK--EGAD-- 138 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE----E-E--eCC--CCCC--
Confidence 34688899999999999866544332 2234455443 356777766555555544421 0 0 000 0000
Q ss_pred EEEech-hHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-------cCCceEEEeccCcCH
Q 000790 678 IKYMTD-GVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-------RRDFKLIVTSATLNA 742 (1283)
Q Consensus 678 I~~~T~-G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-------r~dlklIlmSATld~ 742 (1283)
+ ......+ ......+|++||||=+- |......++.-|+.+... .++-.+++++||...
T Consensus 139 -----p~~~~~~~l-~~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 139 -----PAAVAFDAI-QKAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred -----HHHHHHHHH-HHHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 1 1111111 11124679999999998 555444555555555432 267789999999843
No 215
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.60 E-value=0.21 Score=62.36 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHhHh---cCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCH
Q 000790 829 PELLILPIYSQLPADLQAKIFEKA---KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSR 905 (1283)
Q Consensus 829 ~~l~Il~LHs~L~~~er~~I~~~f---~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~ 905 (1283)
.++....+||++...+|..+++.| +.|.+-.||+=...+-|||+-+-+++|-.++ .+| |.=-
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWN-----------PaLE 833 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWN-----------PALE 833 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccC-----------HHHH
Confidence 467788899999999999999999 3346777778888899999999999987554 233 4444
Q ss_pred HHHHHHhcccCCCCCCEEEEecChhhh
Q 000790 906 AAADQRAGRAGRTGPGTCYRLYTESAY 932 (1283)
Q Consensus 906 as~~QRaGRAGR~g~G~cyrLyt~~~~ 932 (1283)
.++.-|+=|.|-..+-+.|||..+...
T Consensus 834 qQAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 834 QQACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred HHHHHHHHHhcccCceEEEEEEecCcH
Confidence 566667777777777888888876654
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.0078 Score=76.51 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=28.9
Q ss_pred HHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 687 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 687 Lr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
+..+...+.-.++.+|||||+|. +..+..-.+||.+-.-.+++++|+++
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 33333334456789999999993 44455555666544333455555544
No 217
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.54 E-value=0.022 Score=65.56 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 680 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 680 (1283)
..-.+|-=.||.||--++.-.|++..+....+.+.+...-.|-....+.+...-...+-...-......+...-..-|+|
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~GvlF 141 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVLF 141 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCccc
Confidence 45566777899999999999999987766666777777777877766666542222111000000111111122345889
Q ss_pred echhHHHHHHccCC----C-------C-CC-CceEEEcCCCc-CCcchh-----HHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDS----D-------L-DK-YRVIVMDEAHE-RSLSTD-----VLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~----~-------L-~~-~s~IIIDEaHE-Rsl~tD-----~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+|...|........ - + .+ =.+||+||||. -+.... -.-..+..+...-|+.++|.+|||-
T Consensus 142 ~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 142 STYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATG 220 (303)
T ss_pred hhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccc
Confidence 99888776642210 0 0 11 25999999995 122111 1112233444556889999999996
No 218
>PRK08727 hypothetical protein; Validated
Probab=96.51 E-value=0.015 Score=65.02 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=22.4
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
.+.++|.|++|+|||..+..+. ......+..++|+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~-~~~~~~~~~~~y~ 75 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALC-AAAEQAGRSSAYL 75 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHHHHcCCcEEEE
Confidence 3569999999999997654332 2233334455554
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=96.47 E-value=0.031 Score=63.74 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
+..+.+++|+||+|+|||+.+........ ..+..|+++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~ 136 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFT 136 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 66789999999999999998765543322 234466665
No 220
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.46 E-value=0.033 Score=71.05 Aligned_cols=121 Identities=22% Similarity=0.297 Sum_probs=73.4
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecchHHHHHHHHHHHHHHhccccCCe--eeEEEeeee--ccCCCc
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK--VGYAIRFED--VTGPST 676 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~--VGy~ir~e~--~~s~~t 676 (1283)
+.++|.|.=|=|||.++-+.++...... ...|+||.|+.+.+..+.+..-+-+. .+|-. |.+..-++. ......
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~-~lg~~~~v~~d~~g~~~~~~~~~~ 310 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLE-FLGYKRKVAPDALGEIREVSGDGF 310 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHH-HhCCccccccccccceeeecCCce
Confidence 4899999999999998765543222111 45899999999999888766543332 23321 111111111 112334
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
.|.|..|.... + .-++||||||= .+..-++..++.. .+.|+||.|+.
T Consensus 311 ~i~y~~P~~a~-~--------~~DllvVDEAA--aIplplL~~l~~~-------~~rv~~sTTIh 357 (758)
T COG1444 311 RIEYVPPDDAQ-E--------EADLLVVDEAA--AIPLPLLHKLLRR-------FPRVLFSTTIH 357 (758)
T ss_pred eEEeeCcchhc-c--------cCCEEEEehhh--cCChHHHHHHHhh-------cCceEEEeeec
Confidence 57777776543 1 15799999996 4555444444332 35689999993
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=96.45 E-value=0.021 Score=63.67 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCCCceEEEcCCCcCCcchh---HHHHHHHHHHHhcCCceEEEeccCcCHHH
Q 000790 696 LDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLNAQK 744 (1283)
Q Consensus 696 L~~~s~IIIDEaHERsl~tD---~ll~lLk~il~~r~dlklIlmSATld~e~ 744 (1283)
+.++++|||||+|.-..+.+ .++.++..+.. .+..+|++|++..+..
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 45678999999994322222 34455554432 2345677888775443
No 222
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.44 E-value=0.072 Score=69.45 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=48.0
Q ss_pred CceEEEechhHHHHHHccC-CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 675 STLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d-~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
...|+++|+.+|..-++.. ..+..++.||||||| |...+-..--+++.....+++.=|.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3568899999998877654 568999999999999 55544333333444444566777999999983
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.38 E-value=0.05 Score=64.13 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=24.9
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
.+.++++.|+||+|||..+. .+.......+..|+++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~g~~V~y~ 217 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDRGKSVIYR 217 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHCCCeEEEE
Confidence 46899999999999998653 3444334445566665
No 224
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.31 E-value=0.0085 Score=76.42 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhC-CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHH
Q 000790 586 PIFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~-qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~ 652 (1283)
.+...|.+++..+..+ ..++|.||+|+|||+.+...+.... ..+.+|+|+.|+..++..+..++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 3467888888887766 7899999999999998776555433 3456899999999999999999865
No 225
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.29 E-value=0.0057 Score=74.97 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHH
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 652 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~ 652 (1283)
+...|..++.+++++...||.||+|+|||....-.++.......+.|+|+.|..+++.++|+.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 447899999999999999999999999998766555554444578999999999999999998843
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.28 E-value=0.042 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.9
Q ss_pred HhCCeEEEEccCCCChHHHHHHHHH
Q 000790 599 RENQVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
..+..++|.||+|+|||+.+-.+..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999998755443
No 227
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.24 E-value=0.022 Score=64.72 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCeEEEEccCCCChHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q 620 (1283)
..++++.||+|||||+.+-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 35789999999999998643
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.23 E-value=0.021 Score=58.47 Aligned_cols=35 Identities=37% Similarity=0.405 Sum_probs=25.5
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecc
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQP 638 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqP 638 (1283)
+++|+|++|+|||+.+.+++..... .++.|+++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 4789999999999988777665543 3556666543
No 229
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.21 E-value=0.031 Score=61.91 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=23.5
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
.+..++|+||+|+|||+.+-.+.. .....+..++++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~-~~~~~~~~~~~i 76 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVA-DASYGGRNARYL 76 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH-HHHhCCCcEEEE
Confidence 457899999999999987654333 322333344444
No 230
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.21 E-value=0.028 Score=68.19 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=70.7
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEE--EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 679 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il--~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 679 (1283)
.+++++|++|+||||.+....... ...+.+|+ .+=|.|.+|....+..++..+.. + |.. ....
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l-~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----~-~~~-----~~~~---- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY-QRKGFKPCLVCADTFRAGAFDQLKQNATKARIP----F-YGS-----YTES---- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEcCcccchhHHHHHHHHhhccCCe----E-Eee-----cCCC----
Confidence 578899999999999866543322 12233333 34467777776665555433321 1 100 0000
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc--CHHHHHHHh
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL--NAQKFSDFF 749 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl--d~e~fa~~f 749 (1283)
.+-.+....+....-..+++||||=+. |...-+-++.-|..+.. ..|+..+++++||. ++...++-|
T Consensus 166 --dp~~i~~~~l~~~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 166 --DPVKIASEGVEKFKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 011111111110012468999999998 55555556666666553 35677889999987 333334444
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.20 E-value=0.033 Score=67.78 Aligned_cols=122 Identities=22% Similarity=0.235 Sum_probs=67.4
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCE--EEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGI--VGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 679 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~--Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 679 (1283)
.+++++|++|+||||.+..+........+.+ ++.+=++|..|....+.++...+.. + |. ....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp----~-~~-----~~~~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP----V-FA-----LGKG----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc----e-Ee-----cCCC-----
Confidence 4788999999999999766554422122333 3444567777766666555544322 1 00 0000
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl 740 (1283)
..|..+....+.......|++||||=+- |...-+.++..|..+.. ..|+-.+++++||.
T Consensus 165 -~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0121222222111123568999999998 55544455555555543 24555677777775
No 232
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.13 E-value=0.035 Score=67.67 Aligned_cols=120 Identities=27% Similarity=0.308 Sum_probs=66.5
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEE--EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 678 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il--~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I 678 (1283)
..+++++|++|+||||.+....... ...+.+++ .+=+.|..|....+.++..++.. + |. ....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L-~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp----~-~~-----~~~~---- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYF-KKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP----F-YG-----DPDN---- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc----E-Ee-----cCCc----
Confidence 4578899999999999876544322 22233333 33355666666666565544322 1 00 0000
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 740 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl 740 (1283)
..+..++...+.. +..+++||||.+- |....+-++.-|+.+.. ..++..+++++||.
T Consensus 160 --~d~~~i~~~al~~--~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 160 --KDAVEIAKEGLEK--FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred --cCHHHHHHHHHHH--hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 0111122222211 2345899999997 44545555555555543 35777888888886
No 233
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.017 Score=75.32 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=27.1
Q ss_pred cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 692 KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 692 ~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
..+...++.+|||||||. ++.+..-.|||.+-.-...+.+|+++
T Consensus 114 ~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 345567899999999994 44454445555544434455555544
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.08 E-value=0.015 Score=62.57 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
.+..++++++.|+||+|||..+...+.+. ...+..++++ ....|... +..... ..
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v~f~-~~~~L~~~----l~~~~~-----------------~~-- 97 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEA-IRKGYSVLFI-TASDLLDE----LKQSRS-----------------DG-- 97 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEE-EHHHHHHH----HHCCHC-----------------CT--
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcceeEe-ecCceecc----cccccc-----------------cc--
Confidence 34578899999999999998765544333 3344456655 33334332 211000 00
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCcCHHHHHHHhCCC
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQKFSDFFGSV 752 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATld~e~fa~~f~~~ 752 (1283)
+...++.. +.+++++||||+---.. ++.....|-.++.. .....+|+ +.-++...+.++|++.
T Consensus 98 -----~~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 98 -----SYEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGDR 161 (178)
T ss_dssp -----THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT-----
T ss_pred -----chhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeEe-eCCCchhhHhhccccc
Confidence 01123333 44689999999873222 23222223233322 22234555 4446788888888753
No 235
>PRK05642 DNA replication initiation factor; Validated
Probab=96.08 E-value=0.034 Score=62.38 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=22.6
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 637 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 637 (1283)
..++|+|++|+|||..+ +.+.......+..++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHhCCCcEEEee
Confidence 67899999999999874 333333233344566553
No 236
>PHA02533 17 large terminase protein; Provisional
Probab=96.07 E-value=0.052 Score=67.88 Aligned_cols=155 Identities=19% Similarity=0.274 Sum_probs=92.2
Q ss_pred hcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHH-HhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCC-
Q 000790 583 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLL-EDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD- 660 (1283)
Q Consensus 583 ~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Ll-e~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~- 660 (1283)
..+++.++|..++..+..++..+|.-+=..|||+.+..+++ ......+..|+++.|++..|..+.+++...... +..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~-~P~l 134 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIEL-LPDF 134 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHh-CHHH
Confidence 35778899999999887778888989999999999775444 333445668999999999999998887643321 110
Q ss_pred -eeeE------EEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceE
Q 000790 661 -KVGY------AIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 661 -~VGy------~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlkl 733 (1283)
..+. .+.+ ..++.|.+.|..- +. ..=.+++++||||+|.-.-..+++.. +...+......++
T Consensus 135 ~~~~i~~~~~~~I~l----~NGS~I~~lss~~--~t----~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~ 203 (534)
T PHA02533 135 LQPGIVEWNKGSIEL----ENGSKIGAYASSP--DA----VRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKI 203 (534)
T ss_pred hhcceeecCccEEEe----CCCCEEEEEeCCC--Cc----cCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceE
Confidence 0110 1111 1334454444321 00 00123567999999953222233333 3334444344567
Q ss_pred EEeccCcCHHHHHHHh
Q 000790 734 IVTSATLNAQKFSDFF 749 (1283)
Q Consensus 734 IlmSATld~e~fa~~f 749 (1283)
+++|.+-....|.+++
T Consensus 204 iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 204 IITSTPNGLNHFYDIW 219 (534)
T ss_pred EEEECCCchhhHHHHH
Confidence 7777665333355443
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.013 Score=71.61 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHH
Q 000790 694 SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQ 743 (1283)
Q Consensus 694 ~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e 743 (1283)
+.-..+.++|||||| .+..+..-.+|+.+-. |...++++-||-+..
T Consensus 117 p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte~~ 162 (484)
T PRK14956 117 PMGGKYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTEFH 162 (484)
T ss_pred hhcCCCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCChh
Confidence 334578999999999 4566666666666633 334455544554433
No 238
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.018 Score=74.53 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=30.8
Q ss_pred CCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHHHH
Q 000790 694 SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKF 745 (1283)
Q Consensus 694 ~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e~f 745 (1283)
+.-.++.+|||||||. +..+.+-.+||.+-.-...+++|+. |-+...+
T Consensus 115 P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 115 PSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred hhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 3446789999999993 5566666677766544445566654 5544443
No 239
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.04 E-value=0.018 Score=66.36 Aligned_cols=86 Identities=24% Similarity=0.263 Sum_probs=49.9
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhccc-CCCEE--EEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIV--GCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~I--l~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
.+++++++||||+||||.+.......... .+..| +-+-|.|..+.......+..++..+ .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~----------~------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV----------K------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce----------e-------
Confidence 46789999999999999877655444332 12333 3344667766665555555444221 0
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCC
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEA 707 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEa 707 (1283)
...++.-|...+ . .+.++++||||.+
T Consensus 256 --~~~~~~~l~~~l-~--~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKAL-D--RLRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHH-H--HccCCCEEEEeCC
Confidence 011233333332 2 2456899999976
No 240
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.02 E-value=0.034 Score=65.01 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=23.5
Q ss_pred HHHHHHHHhCC--eEEEEccCCCChHHHHHHHHHH
Q 000790 592 DELLQVIRENQ--VVVVVGETGSGKTTQLTQYLLE 624 (1283)
Q Consensus 592 ~eil~~I~~~q--vvII~gpTGSGKTtqi~q~Lle 624 (1283)
..+...+..+. .+++.||+|+|||+.+-.+.-+
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444555555 7999999999999987554433
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.02 E-value=0.06 Score=60.37 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=23.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
+..++|+||+|||||+.+-.+..+. ...+..++++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~v~y~ 79 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL-SQRGRAVGYV 79 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 4689999999999998765433322 2224455554
No 242
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.022 Score=72.35 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=28.1
Q ss_pred CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 693 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 693 d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+.+.++.+|||||+|. +....+-.+|+.+-.....+.+|+.+
T Consensus 114 ~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34567899999999993 44444555666654444556666654
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.94 E-value=0.016 Score=61.58 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=31.2
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHH
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrV 650 (1283)
.++|.||+|+|||+...+++.+... .+..++++.. -..+.++.+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~-e~~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTL-EESPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEEC-CCCHHHHHHHH
Confidence 4789999999999999998887653 3455655532 33344454444
No 244
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.0096 Score=74.75 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=29.0
Q ss_pred cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 692 KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 692 ~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
..+...++.+|||||||. ++....-.+||.+-.-..++.+|+.|-
T Consensus 118 ~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 118 YAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred hchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 335567899999999993 455555666765544344566665543
No 245
>PRK12377 putative replication protein; Provisional
Probab=95.93 E-value=0.11 Score=58.80 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=25.9
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHH
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMS 645 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~q 645 (1283)
....+++.|++|+|||..+..... .....+..++|+ +...+...
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~-~l~~~g~~v~~i-~~~~l~~~ 143 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGN-RLLAKGRSVIVV-TVPDVMSR 143 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH-HHHHcCCCeEEE-EHHHHHHH
Confidence 347899999999999987544332 223333445443 33344433
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.088 Score=59.89 Aligned_cols=117 Identities=22% Similarity=0.333 Sum_probs=68.0
Q ss_pred HHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCC
Q 000790 595 LQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 674 (1283)
Q Consensus 595 l~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~ 674 (1283)
...+..+.++++.|++|+|||..+.....+.. ..+..|+++ +.-.++..+..-... |
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-~~~el~~~Lk~~~~~------~--------------- 155 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-TAPDLLSKLKAAFDE------G--------------- 155 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHHHHHHHhc------C---------------
Confidence 33445889999999999999987765544444 434455543 555666555443321 0
Q ss_pred CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcc---hhHHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHhC
Q 000790 675 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS---TDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFG 750 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~---tD~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f~ 750 (1283)
.....|++. +.+++++||||+--.... .+.++.++-.....+ .+ +++.-.+.+.+...|+
T Consensus 156 ------~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 156 ------RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELFG 218 (254)
T ss_pred ------chHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhcc
Confidence 012233332 567999999998743333 355666555544433 23 4454455665665555
No 247
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.046 Score=68.90 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=29.3
Q ss_pred HHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 689 ETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 689 ~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+...+...++.+|||||||. +..+..-.+|+.+-.-.+.+.+|+.+
T Consensus 109 ~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 333445678899999999993 45555555565554433455555544
No 248
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.017 Score=73.32 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=28.5
Q ss_pred HHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEe
Q 000790 689 ETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 689 ~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlm 736 (1283)
.+...+...++.++|||||| .++.+..-.+||.+-.-.+.+++|+.
T Consensus 110 ~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 33333455689999999999 35555666667755443334455554
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.022 Score=70.87 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=27.1
Q ss_pred CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 693 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 693 d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+.-.++.++|||||| .+..+..-.+|+.+-.-.+...+|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3455689999999999 345555556666544333455555543
No 250
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.033 Score=68.73 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=28.2
Q ss_pred HHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEe
Q 000790 689 ETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 689 ~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlm 736 (1283)
.....|...++.+|||||+|. +....+-.+++.+-.-.+...+|+.
T Consensus 107 ~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 107 NSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred HHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 333456678999999999993 4444444555555443344555554
No 251
>PRK10867 signal recognition particle protein; Provisional
Probab=95.84 E-value=0.045 Score=66.69 Aligned_cols=122 Identities=23% Similarity=0.253 Sum_probs=68.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCE--EEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGI--VGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 679 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~--Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 679 (1283)
.+++++|++||||||.+..+........+.+ ++.+=+.|.+|....+.+++..+.. + |... .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~----v-~~~~----~------- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP----V-FPSG----D------- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe----E-EecC----C-------
Confidence 5788999999999998766544322221333 3445678888776655555544322 1 1100 0
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl 740 (1283)
...+.-+............|++||||=+- |...-+.++..|..+.. ..|+--+++++|+.
T Consensus 165 ~~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 165 GQDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 01223333322222224579999999987 55444445555555443 24555577788876
No 252
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.80 E-value=0.05 Score=70.40 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=92.3
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCe--eEEEecCccc
Q 000790 790 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR--KCIVATNIAE 867 (1283)
Q Consensus 790 ~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~r--KVLVATnIAE 867 (1283)
...+..+|||..-....+.+..+|. ..++..+-|.|....++|+...+.|....+ ..|++|-...
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLn-------------yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLN-------------YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHh-------------hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 3457789999744433333333332 258889999999999999999999976543 5788999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcC
Q 000790 868 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEML 937 (1283)
Q Consensus 868 tGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~ 937 (1283)
.|||+-+.+.||- ||..- .|.=-+.+.-|+-|.|++..=..|||+++...++.++
T Consensus 1340 vGiNLtgADTVvF--------YDsDw-------NPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1340 VGINLTGADTVVF--------YDSDW-------NPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred cccccccCceEEE--------ecCCC-------CchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 9999999999995 88644 2555678888999999999999999999877655443
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.025 Score=67.17 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=29.1
Q ss_pred HccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 690 TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 690 ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
+...+....+.+|||||||. ++....-.+|+.+-.-..+..+|++|
T Consensus 133 l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 133 LSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred hhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 33335567889999999994 45555566666664433445555554
No 254
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.75 E-value=0.0081 Score=64.46 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=54.7
Q ss_pred EEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEee-------eeccCCCce
Q 000790 605 VVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF-------EDVTGPSTL 677 (1283)
Q Consensus 605 II~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~-------e~~~s~~t~ 677 (1283)
||+|+-|-|||+++-+.+..........|+|+.|+...+..+.+.+...+. ..||...- .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 689999999999987755444333335799999999998887766543322 12222100 001123567
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
|.|+.|..++.. ....++||||||= .+... +|+.++. ....|+||.|+
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p----~L~~ll~---~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIPLP----LLKQLLR---RFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-HH----HHHHHHC---CSSEEEEEEEB
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCCHH----HHHHHHh---hCCEEEEEeec
Confidence 788888776432 2235899999995 34443 4444443 23467778887
No 255
>PRK08116 hypothetical protein; Validated
Probab=95.75 E-value=0.12 Score=59.24 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
+..+++.|++|+|||..+.. +.......+..++++
T Consensus 114 ~~gl~l~G~~GtGKThLa~a-ia~~l~~~~~~v~~~ 148 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAAC-IANELIEKGVPVIFV 148 (268)
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHcCCeEEEE
Confidence 44699999999999987544 444333334456555
No 256
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.025 Score=67.52 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=21.2
Q ss_pred HHHHHHhCC---eEEEEccCCCChHHHHHHHHH
Q 000790 594 LLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 594 il~~I~~~q---vvII~gpTGSGKTtqi~q~Ll 623 (1283)
+..++..++ .++++||.|+||||.+-.+.-
T Consensus 28 l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 28 ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 344555543 469999999999998765443
No 257
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.025 Score=70.63 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
++..+...+...++.+|||||||. ++.+..-.+|+.+-.-.+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 334444445677899999999994 44444445555444323345555544
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.70 E-value=0.043 Score=58.59 Aligned_cols=130 Identities=19% Similarity=0.197 Sum_probs=68.0
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccC---C
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG---P 674 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s---~ 674 (1283)
|..++.+.|.|++||||||.+-. |.-......|.|.+- -. .+... ...+. ..++|......... .
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~-g~-~~~~~-~~~~~--------~~i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL-LTGDLKPQQGEITLD-GV-PVSDL-EKALS--------SLISVLNQRPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH-HhccCCCCCCEEEEC-CE-EHHHH-HHHHH--------hhEEEEccCCeeecccHH
Confidence 45789999999999999987644 322222234555432 11 11110 11111 12333221100000 0
Q ss_pred CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 675 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
...+...+.|+..+..+....+.+..++|+||.= .+++......++..+.....+..+|++|--+
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 157 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWITHHL 157 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 0013456777777776666677888999999986 5666654444433333332345556655443
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.70 E-value=0.18 Score=58.96 Aligned_cols=112 Identities=12% Similarity=0.152 Sum_probs=58.9
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEE-EecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceE
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG-CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 678 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il-~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I 678 (1283)
.++.+++.|++|+|||..+.....+.. ..+..+. +..| .++..+...+ +. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~--~l~~~lk~~~----~~------------------~--- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP--EFIRELKNSI----SD------------------G--- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH--HHHHHHHHHH----hc------------------C---
Confidence 457899999999999987654433332 3333343 4444 2332222211 10 0
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCcCHHHHHHHh
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATld~e~fa~~f 749 (1283)
+-..++.. +.++++|||||+.--.+.......+|-.++..| ....+| +|.-++.+.+.+.|
T Consensus 207 ---~~~~~l~~------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti-~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ---SVKEKIDA------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTF-FTSNFDFDELEHHL 269 (306)
T ss_pred ---cHHHHHHH------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEE-EECCCCHHHHHHHH
Confidence 11112222 567899999999843333222223444444333 334444 45555677777766
No 260
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.031 Score=58.24 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=61.6
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
|..++.+.|+|++|+||||.+-... -......+.|.+-- .. +......++ -..++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~-g~~~~~~G~i~~~~-~~-~~~~~~~~~--------~~~i~~~~q---------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIA-GLLKPTSGEILIDG-KD-IAKLPLEEL--------RRRIGYVPQ---------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECC-EE-cccCCHHHH--------HhceEEEee----------
Confidence 3578999999999999998764422 21111233332211 00 000000011 012333222
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC-CceEEEeccC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFKLIVTSAT 739 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~-dlklIlmSAT 739 (1283)
.+.|+..+..+....+.+..++|+||.- .+++......+...+..... +..+|+.|--
T Consensus 81 ---lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 81 ---LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6777766655555556678999999998 67776554444443333222 3455555544
No 261
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.64 E-value=0.11 Score=54.98 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=57.8
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe--cchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEE
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 680 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 680 (1283)
+++++|++|+||||.+..+..... ..+.+++++ -+++..+.......+..+ |..+ ......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~~g~~v~~i~~D~~~~~~~~~l~~~~~~~----~~~~------~~~~~~------ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-KKGKKVLLVAADTYRPAAIEQLRVLGEQV----GVPV------FEEGEG------ 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCChHHHHHHHHhcccC----CeEE------EecCCC------
Confidence 578999999999998765544322 223444432 355544333322222222 2111 111100
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATl 740 (1283)
..+..++...+....-.++++||||..+....+.+ .+..+..+... .++-.+++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~-~l~~l~~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 65 KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDEN-LMEELKKIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHH-HHHHHHHHHhhcCCCeEEEEEECCC
Confidence 01222222211111234688999999984333233 33444444332 3566677777754
No 262
>PRK06921 hypothetical protein; Provisional
Probab=95.63 E-value=0.1 Score=59.79 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=25.0
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEec
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQ 637 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tq 637 (1283)
.+..+++.|+||+|||..+.. |....... +..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a-ia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA-AANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHhhhcCceEEEEE
Confidence 467899999999999987644 33333333 44566553
No 263
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.61 E-value=0.014 Score=62.10 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecC--ccccc
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN--IAETS 869 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATn--IAEtG 869 (1283)
.+|.+|||+|+....+.+...|..... ..++.++.- .......+++.|..+.-.||+|+. .+..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~---------~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EG 74 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE---------EKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEG 74 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc---------cccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEe
Confidence 369999999999999888877653210 012222222 245677888999999999999998 99999
Q ss_pred CCCCC--eeEEEEcCCccceeccCCCC--c----------ccccccccCHHHHHHHhcccCCCCCCEEEEe
Q 000790 870 LTVDG--IFYVIDTGYGKMKVYNPKMG--M----------DALQVFPVSRAAADQRAGRAGRTGPGTCYRL 926 (1283)
Q Consensus 870 IdIp~--V~~VIDsGl~K~~~yD~~~g--~----------~~L~~~PiS~as~~QRaGRAGR~g~G~cyrL 926 (1283)
||+++ ++.||-.|+--...-||... + ......|...-...|-+||+=|...-.|..+
T Consensus 75 iD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 75 IDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp S--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred ecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 99996 77888888754333333210 0 0111234444567799999999986444333
No 264
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.058 Score=66.99 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHHHHhCC---eEEEEccCCCChHHHHHHHHH
Q 000790 595 LQVIRENQ---VVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 595 l~~I~~~q---vvII~gpTGSGKTtqi~q~Ll 623 (1283)
..++..++ .+|++||.|+||||.+-.+.-
T Consensus 34 ~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 34 SYTILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34455554 689999999999998755443
No 265
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.59 E-value=0.064 Score=61.97 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=65.1
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCC------CEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCC
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTN------GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 675 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~------~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~ 675 (1283)
.+++|+|+||.|||+.+-.|.-.+..... +.+++-.|...-...++..+-..++......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------------- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------------- 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------------
Confidence 68999999999999999888766543221 1333445655555555666656555443211
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcC--C--cchhHHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHER--S--LSTDVLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHER--s--l~tD~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
..+.-.+... + .++. --++.+|||||+|.- + ...-.++..||.+.+. -.+.+|++ .|.+
T Consensus 128 ~~~~~~~~~~-~-~llr---~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~~ 190 (302)
T PF05621_consen 128 DRVAKLEQQV-L-RLLR---RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTRE 190 (302)
T ss_pred CCHHHHHHHH-H-HHHH---HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccHH
Confidence 0000011111 1 1111 125789999999951 1 1223566777776433 24555554 4543
No 266
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.57 E-value=0.083 Score=72.68 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHh--CCeEEEEccCCCChHHHHHHH--HHHhcc-cCCCEEEEecchHHHHHHHHHHHHHHhccccCC
Q 000790 586 PIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQY--LLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 660 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~--~qvvII~gpTGSGKTtqi~q~--Lle~~~-~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~ 660 (1283)
.+.+-|.+++..+.. +++++|.|..|+||||.+-.. ++.... ..+..|+.+.|+--+|..+.+ .|..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~--- 906 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVD--- 906 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCch---
Confidence 577899999999885 489999999999999985322 222221 224568888999888765531 1211
Q ss_pred eeeEEEeeeeccCCCceEEEechhHHHHH-----HccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEE
Q 000790 661 KVGYAIRFEDVTGPSTLIKYMTDGVLLRE-----TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 735 (1283)
Q Consensus 661 ~VGy~ir~e~~~s~~t~I~~~T~G~LLr~-----ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIl 735 (1283)
-.|-..||.. ...+..+...++||||||= +++...+..+++.+. ..+.++|+
T Consensus 907 -------------------A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvVL 963 (1623)
T PRK14712 907 -------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAVA 963 (1623)
T ss_pred -------------------HhhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEEE
Confidence 0111112111 0111223346899999996 566655555555442 24578888
Q ss_pred eccCc
Q 000790 736 TSATL 740 (1283)
Q Consensus 736 mSATl 740 (1283)
+-=+-
T Consensus 964 VGD~~ 968 (1623)
T PRK14712 964 SGDTD 968 (1623)
T ss_pred Ecchh
Confidence 77554
No 267
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.032 Score=70.35 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=22.2
Q ss_pred HHHHHHHhCC---eEEEEccCCCChHHHHHHHHH
Q 000790 593 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 593 eil~~I~~~q---vvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+..+|..++ .+|++||.|+||||.+-.+.-
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555553 569999999999998755443
No 268
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.48 E-value=0.044 Score=56.73 Aligned_cols=104 Identities=22% Similarity=0.321 Sum_probs=61.6
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
+..++.+.|.|++||||||.+-. |.-......|.|.+-- + ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~~--~-------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKL-IAGELEPDEGIVTWGS--T-------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH-HcCCCCCCceEEEECC--e-------------------EEEEEEcc----------
Confidence 35789999999999999987643 2221112234443311 0 13443221
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.+.|+..+..+....+.+..++|+||.- .+++.+....+...+... ...+|+.|-.
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~--~~til~~th~ 126 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 6778777766666667788999999986 567765444443333322 2344554444
No 269
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.46 E-value=0.05 Score=58.54 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
.+..+..+.|+||.||||||.+-. |.-......|.|.+- |..++|.....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~-l~Gl~~p~~G~i~~~----------------------g~~i~~~~q~~------- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI-LAGQLIPNGDNDEWD----------------------GITPVYKPQYI------- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH-HHcCCCCCCcEEEEC----------------------CEEEEEEcccC-------
Confidence 356789999999999999998644 322222234555431 11234421110
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCc
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATL 740 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATl 740 (1283)
.++.|+..+..+....+.+..++|+||-- .+++......++..+.... ...-+|+.|--+
T Consensus 71 ---~LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 71 ---DLSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 06777776666666667788999999986 5666554443333333221 124455555443
No 270
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.07 Score=66.79 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=29.4
Q ss_pred HHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 687 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 687 Lr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
+..+...+...++.+|||||||. +.....-.+|+.+-.-.+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 33344446677899999999994 33344445555554433455555544
No 271
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.42 E-value=0.073 Score=75.64 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhC--CeEEEEccCCCChHHHHH---HHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccC
Q 000790 585 LPIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLT---QYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 659 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~--qvvII~gpTGSGKTtqi~---q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG 659 (1283)
..+.+-|.+++..|..+ ++++|+|..|+||||.+- ..+.+.....+..|+.+.|+-.+|..+.. .|..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~-- 1090 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQ-- 1090 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCc--
Confidence 46789999999998754 788999999999999872 33333332335578888999888765531 1111
Q ss_pred CeeeEEEeeeeccCCCceEEEechhHHHHH---HccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEe
Q 000790 660 DKVGYAIRFEDVTGPSTLIKYMTDGVLLRE---TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 660 ~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~---ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlm 736 (1283)
-.|-..||.. ....+.+...++||||||= ++.+..+..+++.+. ....++|++
T Consensus 1091 --------------------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlv 1146 (1960)
T TIGR02760 1091 --------------------AQTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSL 1146 (1960)
T ss_pred --------------------hHhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEe
Confidence 0111222210 0112335567899999996 666766666665543 345677776
Q ss_pred ccC
Q 000790 737 SAT 739 (1283)
Q Consensus 737 SAT 739 (1283)
-=+
T Consensus 1147 GD~ 1149 (1960)
T TIGR02760 1147 GDI 1149 (1960)
T ss_pred CCh
Confidence 543
No 272
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.064 Score=67.98 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=28.8
Q ss_pred HHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 687 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 687 Lr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
+..+...+...+|.++||||||. ++.+..-.+|+.+-.-...+.+|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 33333445667899999999993 45555445555543323344555543
No 273
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.40 E-value=0.058 Score=63.12 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=44.3
Q ss_pred HhcCCCHHHHHHHHHHHHhC--CeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecch
Q 000790 582 RQYLPIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPR 639 (1283)
Q Consensus 582 R~~LPi~~~Q~eil~~I~~~--qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPr 639 (1283)
-.--|....|.-++++++.. ..|.+.|.-|||||..++..-++..+.. ..+|+|+-|+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 34457778899999999865 5678899999999998877766665443 3478888775
No 274
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.39 E-value=0.036 Score=63.14 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHH
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~ 621 (1283)
.+.+.++..+..+..+++.||+|+|||+.+-..
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 455667888889999999999999999987554
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.37 E-value=0.074 Score=52.79 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.5
Q ss_pred EEEEccCCCChHHHHHHHH
Q 000790 604 VVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 604 vII~gpTGSGKTtqi~q~L 622 (1283)
++|.||+|+|||+.+-...
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999998875433
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.30 E-value=0.045 Score=63.18 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCeEEEEccCCCChHHHHH---HHHHHhcccCCCEEEEe
Q 000790 601 NQVVVVVGETGSGKTTQLT---QYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~---q~Lle~~~~~~~~Il~t 636 (1283)
+..+++.||+|||||+.+- ..+...++...+.++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v 96 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe
Confidence 4579999999999999763 34444444333344443
No 277
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.30 E-value=0.2 Score=60.08 Aligned_cols=144 Identities=21% Similarity=0.161 Sum_probs=88.7
Q ss_pred cCCCHHHHHHHHHHHHhCCe-----EEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 584 YLPIFSVRDELLQVIRENQV-----VVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qv-----vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
.+|+-++|.+.+..+..... -|+.-+-|.|||.|....++...- +...+|++|+.+ .+|....+.....
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~--ra~tLVvaP~VA-lmQW~nEI~~~T~--- 255 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD--RAPTLVVAPTVA-LMQWKNEIERHTS--- 255 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc--cCCeeEEccHHH-HHHHHHHHHHhcc---
Confidence 46888999998877654322 367778999999998777776432 345888889754 4677777755433
Q ss_pred CCeeeEEEeeeecc-----CCCceEEEechhHHHHHHcc-CC-------------CCCC--CceEEEcCCCc---CCcch
Q 000790 659 GDKVGYAIRFEDVT-----GPSTLIKYMTDGVLLRETLK-DS-------------DLDK--YRVIVMDEAHE---RSLST 714 (1283)
Q Consensus 659 G~~VGy~ir~e~~~-----s~~t~I~~~T~G~LLr~ll~-d~-------------~L~~--~s~IIIDEaHE---Rsl~t 714 (1283)
|..--|...+.... -.+..++..|..++-..... +. .|.. +--|||||||. |..+|
T Consensus 256 gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snT 335 (791)
T KOG1002|consen 256 GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNT 335 (791)
T ss_pred CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccH
Confidence 44444444433322 12456777777766544432 11 1333 34599999994 66666
Q ss_pred hHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 715 DVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 715 D~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
--...-|+. .+-+.+|.|+
T Consensus 336 ArAV~~L~t-------t~rw~LSGTP 354 (791)
T KOG1002|consen 336 ARAVFALET-------TYRWCLSGTP 354 (791)
T ss_pred HHHHHhhHh-------hhhhhccCCc
Confidence 432222222 2347789998
No 278
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.24 E-value=0.041 Score=69.75 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=39.7
Q ss_pred CeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEE
Q 000790 856 TRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYR 925 (1283)
Q Consensus 856 ~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyr 925 (1283)
.++.|++-.++-.|-|-|+|-.++- . . ..-|-.+=.|-+||.-|.. .|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck-----L---~----------~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK-----L---R----------SSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE-----e---c----------CCCcchHHHHHhccceeeeeccccceec
Confidence 5899999999999999999866652 1 1 2456677899999999965 355444
No 279
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.081 Score=67.03 Aligned_cols=50 Identities=24% Similarity=0.386 Sum_probs=30.7
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
++..+...+.+..+.+|||||+|. ++....-.+|+.+-.-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 333344456678899999999994 34444445555544434556666654
No 280
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.20 E-value=0.052 Score=62.26 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=28.0
Q ss_pred CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 695 DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 695 ~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
....|.+||||||| ++..|...++.+.+-......++|+..-
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 35678999999999 5666766666666554444556665443
No 281
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.09 Score=64.94 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=21.1
Q ss_pred HHHHHHhCCe---EEEEccCCCChHHHHHHHHH
Q 000790 594 LLQVIRENQV---VVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 594 il~~I~~~qv---vII~gpTGSGKTtqi~q~Ll 623 (1283)
+...+..++. +|++||+|+||||.+-.+.-
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344555543 79999999999998765443
No 282
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.036 Score=65.27 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhCC----eEEEEccCCCChHHHHHHHH
Q 000790 586 PIFSVRDELLQVIRENQ----VVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 586 Pi~~~Q~eil~~I~~~q----vvII~gpTGSGKTtqi~q~L 622 (1283)
++||+|...++.+...+ -++++||.|+|||+.+..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 56888888888876543 57899999999999865543
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.083 Score=56.04 Aligned_cols=128 Identities=22% Similarity=0.250 Sum_probs=64.4
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec-chHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
|..+..+.|+||.||||||.+-.. .-......|.|.+-- +..... ...+. ..++|........ ..+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i-~G~~~~~~G~i~~~g~~~~~~~---~~~~~--------~~i~~~~~~~~~~-~~t 91 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLL-LRLYDPTSGEILIDGVDLRDLD---LESLR--------KNIAYVPQDPFLF-SGT 91 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH-HcCCCCCCCEEEECCEEhhhcC---HHHHH--------hhEEEEcCCchhc-cch
Confidence 457899999999999999875433 222222345554321 110000 01111 1233321111000 001
Q ss_pred eEE-EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 677 LIK-YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 677 ~I~-~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
..- +.+.|+..+..+....+.+.+++|+||-= .+++......+.+.+........+|+.|-.
T Consensus 92 ~~e~lLS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~tii~~sh~ 154 (171)
T cd03228 92 IRENILSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKGKTVIVIAHR 154 (171)
T ss_pred HHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 000 16677766665555567788999999976 567765444444444333334445555444
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=95.15 E-value=0.063 Score=62.12 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.2
Q ss_pred CCeEEEEccCCCChHHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~ 621 (1283)
+-++++.||+|+|||+.+-.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999986443
No 285
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.10 E-value=0.14 Score=59.58 Aligned_cols=131 Identities=24% Similarity=0.264 Sum_probs=77.6
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec--chHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ--PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 679 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq--PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 679 (1283)
-+++++|-.|+||||.+...... ....+.+|++.. -.|++|+.+.+..++..|+.+ |... ......-+.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~-l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v-------I~~~-~G~DpAaVa 210 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKY-LKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV-------ISGK-EGADPAAVA 210 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHH-HHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE-------EccC-CCCCcHHHH
Confidence 47788999999999997653322 223344555443 458998888777766555432 1111 011111111
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCc------eEEEeccCc--CHHHHHHHhC
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDF------KLIVTSATL--NAQKFSDFFG 750 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dl------klIlmSATl--d~e~fa~~f~ 750 (1283)
| + .+....-.+|++||+|=|- |..+-.-|+.-|+++.+. .++. .++++=||. |+-.-++.|.
T Consensus 211 f-------D-Ai~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 211 F-------D-AIQAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred H-------H-HHHHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 1 1 1112235689999999999 888888888888887753 3333 456668998 4333334443
No 286
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.07 E-value=0.19 Score=70.04 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=77.0
Q ss_pred cCCCHHHHHHHHHHHHh--CCeEEEEccCCCChHHHHHHH--HHHhcc-cCCCEEEEecchHHHHHHHHHHHHHHhcccc
Q 000790 584 YLPIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQY--LLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 658 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~--~qvvII~gpTGSGKTtqi~q~--Lle~~~-~~~~~Il~tqPrR~LA~qvakrVa~e~~~~l 658 (1283)
...+.+-|.+++..+.. +++++|.|..|+||||.+-.. +++... ..+..|+.+.||--+|..+.+ .|..
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~- 1038 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVD- 1038 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcc-
Confidence 34678899999999887 479999999999999985332 222211 223468888999887754421 1210
Q ss_pred CCeeeEEEeeeeccCCCceEEEechhHHHHHH---c--cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceE
Q 000790 659 GDKVGYAIRFEDVTGPSTLIKYMTDGVLLRET---L--KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 659 G~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~l---l--~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlkl 733 (1283)
-.|-..||... . ........++|||||+= ++++..+..+++.+. ..+.++
T Consensus 1039 ---------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garv 1093 (1747)
T PRK13709 1039 ---------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRA 1093 (1747)
T ss_pred ---------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEE
Confidence 11222222211 0 01122345899999996 677766666666543 235788
Q ss_pred EEeccCc
Q 000790 734 IVTSATL 740 (1283)
Q Consensus 734 IlmSATl 740 (1283)
|++-=+-
T Consensus 1094 VLVGD~~ 1100 (1747)
T PRK13709 1094 VSSGDTD 1100 (1747)
T ss_pred EEecchH
Confidence 8776543
No 287
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.057 Score=68.21 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=21.5
Q ss_pred HHHHHHHhCC---eEEEEccCCCChHHHHHHHH
Q 000790 593 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 593 eil~~I~~~q---vvII~gpTGSGKTtqi~q~L 622 (1283)
.+..++.+++ .+|++||.|+||||.+-.+.
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444555554 58899999999999876544
No 288
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.03 E-value=0.088 Score=63.13 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.1
Q ss_pred CeEEEEccCCCChHHHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+++|+||+|+|||+.+-..+-
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998755443
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.01 E-value=0.2 Score=58.32 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=18.7
Q ss_pred HHHHHHhCC---eEEEEccCCCChHHHHHHH
Q 000790 594 LLQVIRENQ---VVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 594 il~~I~~~q---vvII~gpTGSGKTtqi~q~ 621 (1283)
+...+..++ .++++||+|+|||+.+-..
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 344444443 4555899999999986544
No 290
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.014 Score=62.44 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=67.8
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec-chHHHHHHHHHHHHHHhccccCCeeeEEEeeeecc---C
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT---G 673 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~---s 673 (1283)
|..+..+.|+|+.||||||.+-. |.-......|.|.+-- +..... +....+ ...++|........ +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~-l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~--------~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRC-IAGLEEPDSGSILIDGEDLTDLE-DELPPL--------RRRIGMVFQDFALFPHLT 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH-HhCCCCCCceEEEECCEEccccc-hhHHHH--------hhcEEEEecCCccCCCCC
Confidence 45789999999999999997644 3222122245554311 100000 000111 11234432211111 1
Q ss_pred CCceEEE-echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHH---HHHHHHHHhcCCceEEEeccC
Q 000790 674 PSTLIKY-MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLF---GILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 674 ~~t~I~~-~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll---~lLk~il~~r~dlklIlmSAT 739 (1283)
-.-.+.+ .+.|+..+..+....+.+..++|+||-- .+++.+... .+|+.+... .+..+|+.|--
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~ 160 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQ-LGITVVLVTHD 160 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 1112333 7888877777666677888999999987 567766444 444443321 13455555544
No 291
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.00 E-value=0.15 Score=62.68 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=22.6
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEec
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQ 637 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tq 637 (1283)
+.++|.||+|+|||..+-. +....... +..++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEEE
Confidence 5689999999999987533 33333322 34566653
No 292
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.00 E-value=0.2 Score=64.69 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.8
Q ss_pred CeEEEEccCCCChHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~ 621 (1283)
.+++|.|+||+|||+++-..
T Consensus 782 nvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34569999999999886544
No 293
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.96 E-value=0.11 Score=63.83 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=23.0
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEecc
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQP 638 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqP 638 (1283)
+.++|.||+|+|||..+- .+....... +..++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 469999999999998753 333332221 346777643
No 294
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.051 Score=67.59 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=26.1
Q ss_pred cCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEe
Q 000790 692 KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 692 ~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlm 736 (1283)
..+.+..+.+|||||+|. +..+.+..+++.+-...+...+|++
T Consensus 110 ~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 110 LAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred hccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345678899999999993 3444555556555443334444443
No 295
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.91 E-value=0.13 Score=55.36 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHhC---CeEEEEccCCCChHHHHHHHHH
Q 000790 593 ELLQVIREN---QVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 593 eil~~I~~~---qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+.+.+..+ ..+++.||+|+|||+.+-.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666 4589999999999998755443
No 296
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.078 Score=64.12 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=21.2
Q ss_pred HHHHHHhCC---eEEEEccCCCChHHHHHHHH
Q 000790 594 LLQVIRENQ---VVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 594 il~~I~~~q---vvII~gpTGSGKTtqi~q~L 622 (1283)
+...+.+++ .+|++||.|+||||.+..+.
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHH
Confidence 444555553 38899999999999876543
No 297
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.85 E-value=0.17 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.1
Q ss_pred HHHHhCCeEEEEccCCCChHHHHHH
Q 000790 596 QVIRENQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 596 ~~I~~~qvvII~gpTGSGKTtqi~q 620 (1283)
..+..+.+++|+|||||||||.+-.
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHH
Confidence 4567789999999999999998643
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.84 E-value=0.12 Score=58.89 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=32.9
Q ss_pred HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec
Q 000790 594 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 637 (1283)
Q Consensus 594 il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 637 (1283)
++.-+..+..++|.|+||+|||+.+.+++.......+..|+++.
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34456778999999999999999998887765444355666553
No 299
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=0.44 Score=58.75 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=45.0
Q ss_pred CCCceEEEechhHHHHHHccC-------CCCCCCce-EEEcCCCcCCcch-----h------HHHHHHHHHHHhcCCceE
Q 000790 673 GPSTLIKYMTDGVLLRETLKD-------SDLDKYRV-IVMDEAHERSLST-----D------VLFGILKKVVARRRDFKL 733 (1283)
Q Consensus 673 s~~t~I~~~T~G~LLr~ll~d-------~~L~~~s~-IIIDEaHERsl~t-----D------~ll~lLk~il~~r~dlkl 733 (1283)
+..-.|.|.|..-|...+... .+|.+..+ ++-||||+-...| | -+-..++-.+..+++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 345678899888776654432 12555554 5669999522111 1 122344445566788888
Q ss_pred EEeccCcC--HHHHHHH
Q 000790 734 IVTSATLN--AQKFSDF 748 (1283)
Q Consensus 734 IlmSATld--~e~fa~~ 748 (1283)
+.+|||++ ......|
T Consensus 159 lef~at~~k~k~v~~ky 175 (812)
T COG3421 159 LEFSATIPKEKSVEDKY 175 (812)
T ss_pred ehhhhcCCccccHHHHh
Confidence 89999994 4444444
No 300
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.81 E-value=0.046 Score=59.55 Aligned_cols=31 Identities=29% Similarity=0.590 Sum_probs=22.3
Q ss_pred HHHHHHHh--CCeEEEEccCCCChHHHHHHHHH
Q 000790 593 ELLQVIRE--NQVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 593 eil~~I~~--~qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+...+.. ++.++|.||-|+|||+.+-.++-
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 34444554 58999999999999997654443
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.81 E-value=0.059 Score=57.29 Aligned_cols=128 Identities=21% Similarity=0.252 Sum_probs=65.9
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCce
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~ 677 (1283)
+..++.+.|+||+||||||.+-.. .-......|.|.+-- . .+...-...+. ..++|........ +.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l-~G~~~~~~G~i~~~g-~-~~~~~~~~~~~--------~~i~~~~q~~~~~-~~tv 92 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLI-LGLLRPTSGRVRLDG-A-DISQWDPNELG--------DHVGYLPQDDELF-SGSI 92 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH-HhccCCCCCeEEECC-E-EcccCCHHHHH--------hheEEECCCCccc-cCcH
Confidence 357899999999999999976433 222222244444311 0 00000000111 1233321110000 0010
Q ss_pred EE-EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCc
Q 000790 678 IK-YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 678 I~-~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.- +.+.|+..+..+....+.+..++|+||.= .+++... +..+|+.+.. .+..+|+.|--+
T Consensus 93 ~~~lLS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 156 (173)
T cd03246 93 AENILSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKA--AGATRIVIAHRP 156 (173)
T ss_pred HHHCcCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 00 16778877777666678888999999986 5666554 4444444422 245566665544
No 302
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.72 E-value=0.11 Score=55.93 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=63.2
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcc---cC------CCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEee
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGY---TT------NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF 668 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~---~~------~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~ 668 (1283)
+..+..+.|+||.||||||.+-..+...+. .. ...++++ +- . .+.+.++. +..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~-~q-------~-~~l~~~~L--~~~------- 79 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI-DQ-------L-QFLIDVGL--GYL------- 79 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE-hH-------H-HHHHHcCC--Ccc-------
Confidence 457899999999999999987544322110 00 0012222 11 1 11122221 000
Q ss_pred eeccCCCceEEEechhHHHHHHccCCCCCC--CceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCc
Q 000790 669 EDVTGPSTLIKYMTDGVLLRETLKDSDLDK--YRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 669 e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~--~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.....+.-...|+..+..+....+.+ .+++|+||.= ..++... +..+|+.+.. ....+|+.|--+
T Consensus 80 ----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~--~g~tvIivSH~~ 149 (176)
T cd03238 80 ----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLID--LGNTVILIEHNL 149 (176)
T ss_pred ----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 01223334566776666655556777 8999999986 5666554 3444444422 355666666554
No 303
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.71 E-value=0.057 Score=57.77 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=65.7
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe-cch-----HHHHHHHHH--HHHHHhccccCCeeeEEEeee
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT-QPR-----RVAAMSVAK--RVSEEMDTELGDKVGYAIRFE 669 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t-qPr-----R~LA~qvak--rVa~e~~~~lG~~VGy~ir~e 669 (1283)
+..++.+.|+|+.||||||.+-. |.-......|.|.+- .+. ......+.- .+.+.++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~-i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~------------ 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKT-LAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA------------ 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH-HhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH------------
Confidence 35789999999999999987544 322222234555431 010 011111110 011211110
Q ss_pred eccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCc
Q 000790 670 DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 670 ~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.. ....+.-++.|...+..+....+.+..++|+||.= .+++.+. +..+++.+... ....+|+.|--+
T Consensus 89 ~~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sh~~ 158 (180)
T cd03214 89 HL--ADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARE-RGKTVVMVLHDL 158 (180)
T ss_pred hH--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 00 11234456778776666666667788999999986 5666554 44444443221 144566655543
No 304
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.082 Score=66.93 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=28.3
Q ss_pred HHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 688 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 688 r~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
..+...+...++.++||||+|. ++.+..-.+++.+-.-.++..+|+.+
T Consensus 109 ~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 109 ENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 3333446678899999999993 44444445555544333345555433
No 305
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.18 Score=64.08 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=21.2
Q ss_pred HHHHHHhCC---eEEEEccCCCChHHHHHHHH
Q 000790 594 LLQVIRENQ---VVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 594 il~~I~~~q---vvII~gpTGSGKTtqi~q~L 622 (1283)
+...+..++ .+|++||.|+||||.+-.++
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 445555553 45999999999999876554
No 306
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.077 Score=56.40 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=65.9
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec-chHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
|..++.+.|+|+.||||||.+-. |.-......|.|.+-- +..... ..+ ...++|...........+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~g~~~~~~~----~~~--------~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKI-ILGLLKPDSGEIKVLGKDIKKEP----EEV--------KRRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH-HhCCCCCCCeEEEECCEEcccch----Hhh--------hccEEEEecCCccccCCc
Confidence 45789999999999999997543 3222112244544311 111000 111 123444322111111001
Q ss_pred e--EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccC
Q 000790 677 L--IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSAT 739 (1283)
Q Consensus 677 ~--I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSAT 739 (1283)
. .+..+.|+..+..+......+..++|+||.- .+++......++..+.... ....+|+.|--
T Consensus 90 v~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 90 VRENLKLSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 0 0116778777766666667788999999987 6677654444433333322 13455655543
No 307
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.60 E-value=0.096 Score=55.44 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=33.4
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+...+...+.-..+.++|||||| .++.+..-++||.+-.-..+..+|+++-.+
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 33344444556789999999999 466666667777665544566666666554
No 308
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.58 E-value=0.1 Score=55.14 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=68.3
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec-chHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCc
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 676 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t 676 (1283)
|..+..+.|.|+.||||||.+-.. .-......|.|.+-- +.... ..... ....+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i-~G~~~~~~G~v~~~g~~~~~~--~~~~~--------~~~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKIL-SGLYKPDSGEILVDGKEVSFA--SPRDA--------RRAGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHH-hCCCCCCCeEEEECCEECCcC--CHHHH--------HhcCeEEEEe---------
Confidence 457899999999999999986543 222222344544311 10000 00000 1123444322
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCcCHHHHHHH
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQKFSDF 748 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATld~e~fa~~ 748 (1283)
.+.|+..+..+....+.+.+++|+||.- .+++......++..+... .....+|++|-. .+.+..+
T Consensus 83 ----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~--~~~~~~~ 148 (163)
T cd03216 83 ----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISHR--LDEVFEI 148 (163)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHh
Confidence 7788877776666667788999999986 667765444333333222 224555665544 3334444
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.57 E-value=0.088 Score=58.71 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHH
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrV 650 (1283)
+..+..++|.|++|||||+.+.+++++... .+..++++.= .....++.+++
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~-e~~~~~~~~~~ 72 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT-ENTSKSYLKQM 72 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc-CCCHHHHHHHH
Confidence 345789999999999999999998877543 3556655532 22233444444
No 310
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.25 Score=59.15 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+...+...+....+.+|||||+|. ++....-.+||.+-.-.+...+|++|...
T Consensus 129 l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 129 LISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred HHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 444444445567889999999993 55666666776665433455566655554
No 311
>PRK04195 replication factor C large subunit; Provisional
Probab=94.54 E-value=0.37 Score=59.83 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=19.6
Q ss_pred CCeEEEEccCCCChHHHHHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLE 624 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle 624 (1283)
.+.++|.||+|+||||.+-.++-+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999987655444
No 312
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.53 E-value=0.11 Score=63.91 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=37.5
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
+..+..++|.|++|+||||.+.+++.... ..+.+++++.- .+...|+..+. ..++
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~-Ees~~qi~~ra-~rlg 131 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSG-EESASQIKLRA-ERLG 131 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEc-cccHHHHHHHH-HHcC
Confidence 44578999999999999999999877654 23557777653 33445665553 3344
No 313
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.53 E-value=0.31 Score=61.41 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=86.7
Q ss_pred HHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc-cCCCEEEEecchHHHHHHHHHHHHHHhccccC-Cee----e--
Q 000790 592 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG-DKV----G-- 663 (1283)
Q Consensus 592 ~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG-~~V----G-- 663 (1283)
..+++.. ..+-.++..|==.|||+.+...|.-... -.+-.|+++.|.+-.+..+.++|...+....+ ..+ |
T Consensus 246 ~~~~~~f-kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~ 324 (738)
T PHA03368 246 DAAVRHF-RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET 324 (738)
T ss_pred HHHHHHh-hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE
Confidence 3455554 4567788889999999976522222221 23678999999999999999998765432111 111 1
Q ss_pred EEEeeeeccCCCceEEEechhHHHHHHccCCC--CCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 664 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD--LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 664 y~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~--L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
+.+.+.+ .....|.|.+. .+... =..++++|||||++ +..+.+..+|--+... +.++|.+|-|-.
T Consensus 325 I~i~f~n--G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~Ns 391 (738)
T PHA03368 325 ISFSFPD--GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSSTNT 391 (738)
T ss_pred EEEEecC--CCccEEEEEec-------cCCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecCCC
Confidence 1112211 11235555522 11111 13689999999995 5556666666444333 889999999975
Q ss_pred HHHHHHHhC
Q 000790 742 AQKFSDFFG 750 (1283)
Q Consensus 742 ~e~fa~~f~ 750 (1283)
.+.-..|+.
T Consensus 392 ~~~sTSFL~ 400 (738)
T PHA03368 392 GKASTSFLY 400 (738)
T ss_pred CccchHHHH
Confidence 554444443
No 314
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.44 E-value=0.8 Score=60.82 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=21.0
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG 634 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il 634 (1283)
..+++.||||+|||+.+- .|.+..+.....++
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~-~La~~l~~~~~~~i 627 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAK-ALAEFLFDDEDAMV 627 (852)
T ss_pred eEEEEEcCCCCCHHHHHH-HHHHHhcCCCCcEE
Confidence 358899999999998763 34454444333333
No 315
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.42 E-value=0.2 Score=60.73 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=23.3
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccC--CCEEEEec
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQ 637 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tq 637 (1283)
..++|.|++|+|||..+ +.+....... +..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 46899999999999876 4444443332 34566664
No 316
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.41 E-value=0.073 Score=59.15 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.8
Q ss_pred CeEEEEccCCCChHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q 620 (1283)
..+|+.||+|+||||.+-.
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4799999999999998743
No 317
>PLN03025 replication factor C subunit; Provisional
Probab=94.39 E-value=0.26 Score=57.73 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=17.2
Q ss_pred CeEEEEccCCCChHHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~L 622 (1283)
.++++.||+|+|||+.+....
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999875543
No 318
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.36 E-value=0.048 Score=62.11 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHh----CCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEE-EecchHHHHHHHHHHHHHHhcc
Q 000790 593 ELLQVIRE----NQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVG-CTQPRRVAAMSVAKRVSEEMDT 656 (1283)
Q Consensus 593 eil~~I~~----~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il-~tqPrR~LA~qvakrVa~e~~~ 656 (1283)
++.+.+.. .+++.|+|..|+|||+.+..++.+.... ....++ +.........++...+...++.
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 45555554 5789999999999999988876442211 122333 3322222224445555555553
No 319
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.35 E-value=0.2 Score=66.24 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=58.6
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEEec
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMT 682 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T 682 (1283)
+++++||||+|||..+-. |.+..+.....++++- ..-.+-...++...|...| .||| ..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~-La~~l~~~~~~~~~~d---mse~~~~~~~~~l~g~~~g-yvg~----------------~~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALA-LAELLYGGEQNLITIN---MSEFQEAHTVSRLKGSPPG-YVGY----------------GE 656 (852)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhCCCcceEEEe---HHHhhhhhhhccccCCCCC-cccc----------------cc
Confidence 589999999999987533 4444443333333332 0001111222222222211 2332 23
Q ss_pred hhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcC-----------CceEEEeccCcCHHHHHHHh
Q 000790 683 DGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-----------DFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 683 ~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~-----------dlklIlmSATld~e~fa~~f 749 (1283)
.|.|...+.. ..+++|+|||++. .+.++.-.++ .++.... .-.+|+|+..+-.+.+...+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Ll-q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFY-QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechhh--cCHHHHHHHH-HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 3555554433 4579999999973 3444322222 2222110 12567777777666555544
No 320
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.35 E-value=0.17 Score=65.08 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=24.8
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHH
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVV 725 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il 725 (1283)
|+..+...|....+.++||||||. +.....-.+|+.+-
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLE 143 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLE 143 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhh
Confidence 344444456778999999999993 44445555555543
No 321
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.33 E-value=0.22 Score=61.93 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=92.6
Q ss_pred hhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCC-eeEEEecCcc
Q 000790 788 HITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGT-RKCIVATNIA 866 (1283)
Q Consensus 788 ~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~-rKVLVATnIA 866 (1283)
.+...+..+|+|+.-.+.++-+-+.|.- .++..+-|.|+....+|..+...|.... .-.|++|-..
T Consensus 1039 kLkaegHRvL~yfQMTkM~dl~EdYl~y-------------r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1039 KLKAEGHRVLMYFQMTKMIDLIEDYLVY-------------RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred HhhcCCceEEehhHHHHHHHHHHHHHHh-------------hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 3455678899998655555544444432 3788999999999999999999997644 4567899999
Q ss_pred cccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhc
Q 000790 867 ETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEM 936 (1283)
Q Consensus 867 EtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m 936 (1283)
+.||++-..+.||- ||..- .|.--.+++-|+-|-|-+..-.+|+|.+....++.+
T Consensus 1106 GLGINLTAADTViF--------YdSDW-------NPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~ 1160 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIF--------YDSDW-------NPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 1160 (1185)
T ss_pred cccccccccceEEE--------ecCCC-------CcchhhHHHHHHHhccCccceeeeeecccccHHHHH
Confidence 99999999999995 77543 255556777888888888888999999987765544
No 322
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.32 E-value=0.11 Score=65.58 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=23.3
Q ss_pred HHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHH
Q 000790 688 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKV 724 (1283)
Q Consensus 688 r~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~i 724 (1283)
..+...|...++.+|||||+|. +.....-.+|+.+
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtL 143 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTL 143 (559)
T ss_pred HHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHh
Confidence 3333446678899999999993 4455555556554
No 323
>PRK09087 hypothetical protein; Validated
Probab=94.30 E-value=0.23 Score=55.53 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.0
Q ss_pred CCeEEEEccCCCChHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q 620 (1283)
++.++|+||+|||||+.+-.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56699999999999988743
No 324
>PRK06620 hypothetical protein; Validated
Probab=94.23 E-value=0.25 Score=54.82 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.8
Q ss_pred CeEEEEccCCCChHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLT 619 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~ 619 (1283)
+.++|.||+|||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998764
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.21 E-value=0.16 Score=60.11 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.3
Q ss_pred CeEEEEccCCCChHHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~L 622 (1283)
..++|+||+|+|||+.+-.++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 689999999999998764433
No 326
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.21 E-value=0.13 Score=64.88 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHHhC---CeEEEEccCCCChHHHHHHHH
Q 000790 593 ELLQVIREN---QVVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 593 eil~~I~~~---qvvII~gpTGSGKTtqi~q~L 622 (1283)
.+..++..+ +.+|++||.|+||||.+..+.
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 344455554 457899999999999875543
No 327
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.20 E-value=0.061 Score=61.27 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHH
Q 000790 594 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRV 641 (1283)
Q Consensus 594 il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~ 641 (1283)
+...+..+.+++|+|+|||||||.+-.+ +...-.....|+++.-..+
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNAL-LEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHH-HHHCHTTTSEEEEEESSS-
T ss_pred HhhccccceEEEEECCCccccchHHHHH-hhhccccccceEEeccccc
Confidence 3344567899999999999999998554 4443333367777765443
No 328
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.18 E-value=0.054 Score=70.60 Aligned_cols=120 Identities=19% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeE
Q 000790 585 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 585 LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy 664 (1283)
+..|.+| ++-.|.=++--|....||=|||+++.++++-..+...+.-+||+-- -||.-=+..+...+ ..+|.+||+
T Consensus 137 m~~ydVQ--LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvND-YLA~RDaewm~p~y-~flGLtVg~ 212 (1025)
T PRK12900 137 MVPYDVQ--LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVND-YLAQRDKEWMNPVF-EFHGLSVGV 212 (1025)
T ss_pred ccccchH--HhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeech-HhhhhhHHHHHHHH-HHhCCeeee
Confidence 4445555 6666655666689999999999998888877777766666666543 34333333332222 357888886
Q ss_pred EEeeee----ccCCCceEEEechhHHHHHHccC--------CCCCCCceEEEcCCC
Q 000790 665 AIRFED----VTGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 708 (1283)
Q Consensus 665 ~ir~e~----~~s~~t~I~~~T~G~LLr~ll~d--------~~L~~~s~IIIDEaH 708 (1283)
.....+ ...-.+.|+|+|+.-|---.+.| .....+.+.|||||+
T Consensus 213 i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 213 ILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred eCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 533211 11236889999987543222221 225778999999999
No 329
>PTZ00293 thymidine kinase; Provisional
Probab=94.17 E-value=0.097 Score=57.81 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=29.6
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecch
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 639 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 639 (1283)
.|...++.||-+|||||.+++.+...... +.+++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 36778999999999999988877665443 4567777674
No 330
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.10 E-value=0.18 Score=62.48 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHh---------CCeEEEEccCCCChHHHHHHHHHHhccc---CCCEEEEecchHHHHHHHHHHHHHHhcc
Q 000790 589 SVRDELLQVIRE---------NQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRVSEEMDT 656 (1283)
Q Consensus 589 ~~Q~eil~~I~~---------~qvvII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~LA~qvakrVa~e~~~ 656 (1283)
|+|.-++..|.. -+-++|.-+=|-|||+.+....+-..+. .+..|+|+.+++.-|..+.+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 356666666652 1356777789999999855443333222 2468999999999999998887665543
Q ss_pred c--cCCeeeEEEeeeeccCCCceEEEechhHHHHHHccCCC---CCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCc
Q 000790 657 E--LGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD---LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDF 731 (1283)
Q Consensus 657 ~--lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~---L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dl 731 (1283)
. +....+..+ .......|.+..++-+++.+..++. =.+.+++|+||+|+. ..+-+...+..-...+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCc
Confidence 2 111111100 0011122222222222222222221 124689999999953 3333556666665556665
Q ss_pred e-EEEeccCcC
Q 000790 732 K-LIVTSATLN 741 (1283)
Q Consensus 732 k-lIlmSATld 741 (1283)
. +++.||..+
T Consensus 155 l~~~ISTag~~ 165 (477)
T PF03354_consen 155 LIIIISTAGDD 165 (477)
T ss_pred eEEEEeCCCCC
Confidence 4 455556553
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.09 E-value=0.17 Score=63.21 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=39.7
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+.|.-.|..+....+.+-.++|+||+= -.++.+....+.+.+....++.-+|+.|
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 4566666666666678889999999997 5677776666666666655666666655
No 332
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.06 E-value=0.35 Score=59.53 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=23.7
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcc--cCCCEEEEecc
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGY--TTNGIVGCTQP 638 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~--~~~~~Il~tqP 638 (1283)
+.++|.|++|+|||..+ +.+..... ..+..|+|+.+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 46899999999999765 44444332 22456666644
No 333
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.08 Score=66.79 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=20.7
Q ss_pred HHHhCCeEEEEccCCCChHHHHHH
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q 620 (1283)
.|..|++|.++||.||||||++-+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasL 513 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASL 513 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999999999754
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.99 E-value=0.18 Score=56.47 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 637 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 637 (1283)
+..+..++|.|++||||||.+.+++.... ..+..++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe
Confidence 45688999999999999999888877643 3344555543
No 335
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.38 Score=57.26 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=19.1
Q ss_pred HHHHhC--CeEEEEccCCCChHHHHHH
Q 000790 596 QVIREN--QVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 596 ~~I~~~--qvvII~gpTGSGKTtqi~q 620 (1283)
.+|..+ ...|+.||+|+||||.+-+
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 344544 4689999999999998754
No 336
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.97 E-value=0.32 Score=51.96 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=48.9
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCC-CEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCC-------
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP------- 674 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~------- 674 (1283)
+++|+|+.|+||||.+...+ +.....+ ...++.+|.. ..-|..+||.+..-. ...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i-~~l~~~~~~v~Gf~t~ev---------------r~~g~r~GF~iv~l~-~g~~~~la~~ 63 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI-EELKKKGLPVGGFYTEEV---------------RENGRRIGFDIVDLN-SGEEAILARV 63 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH-HHHHHTCGGEEEEEEEEE---------------ETTSSEEEEEEEET--TS-EEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHH-HHhhccCCccceEEeecc---------------cCCCceEEEEEEECc-CCCccccccc
Confidence 47999999999999986644 3322111 2333333210 124666777554321 111
Q ss_pred --CceEEEechhHHHHHHcc--CCCC----CCCceEEEcCCCcCCcchhHHHHHHHHHHH
Q 000790 675 --STLIKYMTDGVLLRETLK--DSDL----DKYRVIVMDEAHERSLSTDVLFGILKKVVA 726 (1283)
Q Consensus 675 --~t~I~~~T~G~LLr~ll~--d~~L----~~~s~IIIDEaHERsl~tD~ll~lLk~il~ 726 (1283)
.....+......+..+.. -+.| ...++|||||+--.-+...-+...+..++.
T Consensus 64 ~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 64 DFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp TSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred cccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 111111111222222211 1222 466899999998544555555566666655
No 337
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.95 E-value=0.12 Score=54.74 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=61.7
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeecc--CCC
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT--GPS 675 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~--s~~ 675 (1283)
+..++.+.|+|+.||||||.+-.. .-......|.|.+-. + ..++|........ +-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l-~G~~~~~~G~i~~~~--~-------------------~~i~~~~q~~~~~~~tv~ 81 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRAL-AGLWPWGSGRIGMPE--G-------------------EDLLFLPQRPYLPLGTLR 81 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH-hcCCCCCCceEEECC--C-------------------ceEEEECCCCccccccHH
Confidence 457899999999999999976443 222112234443210 0 1122211100000 000
Q ss_pred c-----eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 676 T-----LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 676 t-----~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
. ...-.+.|...+..+....+.+..++|+||-- ..++.+....++..+... ...+|+.|--+
T Consensus 82 ~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~--~~tiiivsh~~ 148 (166)
T cd03223 82 EQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKEL--GITVISVGHRP 148 (166)
T ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHHh--CCEEEEEeCCh
Confidence 0 12235667666665555567788999999976 566665444443333332 34555655543
No 338
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.15 Score=57.31 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=19.7
Q ss_pred HHhCCeEEEEccCCCChHHHHHH
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q 620 (1283)
|..+..++|+|+|||||||.+-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~ 49 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKL 49 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999998644
No 339
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.91 E-value=0.13 Score=59.98 Aligned_cols=50 Identities=32% Similarity=0.343 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHH
Q 000790 592 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVA 642 (1283)
Q Consensus 592 ~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~L 642 (1283)
..+..++..+.+++|+|+|||||||.+-. |+..... ...+|+++.-..++
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhccCCCceEEEECCchhh
Confidence 34555677788999999999999998744 3333322 24578887766665
No 340
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.90 E-value=0.095 Score=67.40 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHH
Q 000790 590 VRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 590 ~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa 651 (1283)
.++.++.++......+|.|=+|+||||.+... +...+..+.+|+.+.=|..|+..+-..+.
T Consensus 674 Qr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~~gkkVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 674 QRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVALGKKVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHHcCCeEEEEehhhHHHHHHHHHHh
Confidence 34455566677788899999999999986553 33334457889999999999888877664
No 341
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.13 Score=65.47 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHhC---CeEEEEccCCCChHHHHHHHHH
Q 000790 594 LLQVIREN---QVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 594 il~~I~~~---qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
+...+..+ ..+|++||.|+|||+.+-.+.-
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHH
Confidence 44444544 4569999999999998755443
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.86 E-value=0.18 Score=61.75 Aligned_cols=101 Identities=29% Similarity=0.240 Sum_probs=56.8
Q ss_pred cCCCHHHHHHHHHHHHh--CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCe
Q 000790 584 YLPIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~--~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~ 661 (1283)
.|..++.+.+.+..+.+ +..++|.|||||||||.+-.+|-+.... ..+ ++++ -..
T Consensus 239 ~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~n-I~Ti---------------------EDP 295 (500)
T COG2804 239 KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERN-IITI---------------------EDP 295 (500)
T ss_pred HhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-Cce-EEEe---------------------eCC
Confidence 35566666666655543 4578889999999999876655443222 222 3332 233
Q ss_pred eeEEEeeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcch
Q 000790 662 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST 714 (1283)
Q Consensus 662 VGy~ir~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~t 714 (1283)
|-|.+.+-....-+.+| =+|-...++.++. .+.++|+|.|+ |+..|
T Consensus 296 VE~~~~gI~Q~qVN~k~-gltfa~~LRa~LR----qDPDvImVGEI--RD~ET 341 (500)
T COG2804 296 VEYQLPGINQVQVNPKI-GLTFARALRAILR----QDPDVIMVGEI--RDLET 341 (500)
T ss_pred eeeecCCcceeeccccc-CCCHHHHHHHHhc----cCCCeEEEecc--CCHHH
Confidence 44444333322222222 2455666666543 34678999999 44444
No 343
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=0.29 Score=59.13 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=29.4
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
+...+...+...++.+|||||+|. ++....-.+|+.+ ...++-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 333443456667889999999993 3444444455544 34444445555554
No 344
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.23 Score=53.91 Aligned_cols=117 Identities=19% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEE
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 680 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 680 (1283)
++..+++||-.||||+-+++.+....+. +.++++.-|..- .|. +. ..|.-. ......-+.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD------~R~----~~---~~V~Sr-----~G~~~~A~~i 64 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAID------TRY----GV---GKVSSR-----IGLSSEAVVI 64 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEecccc------ccc----cc---ceeeec-----cCCcccceec
Confidence 4677999999999999988877665444 446666655311 110 00 011100 0011122334
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCH
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNA 742 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~ 742 (1283)
-.+.-++..+........+++|+||||+- ...-+...|.++... +-+.++-+.++.
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~v~IDEaQF---~~~~~v~~l~~lad~---lgi~Vi~~GL~~ 120 (201)
T COG1435 65 PSDTDIFDEIAALHEKPPVDCVLIDEAQF---FDEELVYVLNELADR---LGIPVICYGLDT 120 (201)
T ss_pred CChHHHHHHHHhcccCCCcCEEEEehhHh---CCHHHHHHHHHHHhh---cCCEEEEecccc
Confidence 45555666665544444489999999993 233344455555432 234444455543
No 345
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.79 E-value=0.14 Score=66.09 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=56.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHH---HHHHhcccCCCEEEEecchHHHHHHHHHHHHHHh
Q 000790 578 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQ---YLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEM 654 (1283)
Q Consensus 578 l~~~R~~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q---~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~ 654 (1283)
...+=+.-|+.+-|.+++.. ....++|.|..|||||+++.- ||+......+..|+++..++.+|..+.+|+...+
T Consensus 188 ~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 188 FFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred HHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 33444557899999887753 345679999999999998654 4455443345589999999999999999997654
Q ss_pred c
Q 000790 655 D 655 (1283)
Q Consensus 655 ~ 655 (1283)
+
T Consensus 266 g 266 (684)
T PRK11054 266 G 266 (684)
T ss_pred C
Confidence 3
No 346
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.15 Score=63.26 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=23.6
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHH
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVV 725 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il 725 (1283)
+...+...|...++.+|||||||. +..+..-.+++.+-
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LE 144 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLE 144 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHh
Confidence 333344456678899999999993 44444444454443
No 347
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.77 E-value=0.12 Score=58.04 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=36.0
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHH
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrV 650 (1283)
+..+..++|.|++|||||+.+.+++++.. ..+..++++. +-+-..++.+++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs-~ee~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA-LEEHPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE-eeCCHHHHHHHH
Confidence 34578999999999999999999988865 3345555543 233444555555
No 348
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.76 E-value=0.44 Score=51.31 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=34.4
Q ss_pred echhHHHHHHccCC----CCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDS----DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~----~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATl 740 (1283)
.+.|+..+..+... .+.+.+++|+||.. ..++......+++.+.... .+..+|+.|--+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 67776555433321 14677999999998 6777665444444333322 235677766543
No 349
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.75 E-value=0.26 Score=60.49 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=23.6
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 637 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 637 (1283)
+.++|.||+|+|||+.+- .+.......+..++++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHcCCCEEEee
Confidence 568999999999998653 33333333355677764
No 350
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.74 E-value=0.11 Score=67.15 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc---cCCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY---TTNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~---~~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
+.+-|.+++... ...++|.|..|||||+++..-+..... -....|+|+..|+.+|..+..|+...++
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 346677777653 567788899999999987654433221 1234799999999999999999977654
No 351
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.74 E-value=0.11 Score=61.21 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc--cCCCEEEEecchHHH
Q 000790 594 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY--TTNGIVGCTQPRRVA 642 (1283)
Q Consensus 594 il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~--~~~~~Il~tqPrR~L 642 (1283)
+..++..+.++||+|+|||||||.+- .|+.... ....+|+++.-..++
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhcCCCCceEEEecCCccc
Confidence 44566778899999999999999873 3444432 123467777766554
No 352
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.66 E-value=0.4 Score=63.56 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=21.5
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCCCEEE
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG 634 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il 634 (1283)
.++++||||+|||+.+ ..|.+..+..+..++
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~~~~~i 630 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDSDDAMV 630 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcCCCcEE
Confidence 6899999999999976 445555544333333
No 353
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.19 Score=63.93 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=21.5
Q ss_pred HHHHHHhCC---eEEEEccCCCChHHHHHHHH
Q 000790 594 LLQVIRENQ---VVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 594 il~~I~~~q---vvII~gpTGSGKTtqi~q~L 622 (1283)
+..++..++ .+|++||.|+||||.+..+.
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHH
Confidence 445566654 48899999999999876543
No 354
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.21 Score=62.39 Aligned_cols=43 Identities=19% Similarity=0.487 Sum_probs=28.4
Q ss_pred CCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 693 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 693 d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.|....+.+|||||||. +..+..-.+|+.+-.-.+...+|+++
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45678899999999994 45555555666554444455666554
No 355
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.54 E-value=0.11 Score=57.28 Aligned_cols=40 Identities=30% Similarity=0.367 Sum_probs=28.9
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccC-----CCEEEEec
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NGIVGCTQ 637 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-----~~~Il~tq 637 (1283)
+..+.++.|.|++|||||+.+.+++....... ...++++.
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44578999999999999999888776643332 14555554
No 356
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.53 E-value=0.51 Score=55.72 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=23.5
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHH
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKV 724 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~i 724 (1283)
++..+...+...+..+|||||||. +..+..-.+++.+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~l 141 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTL 141 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHH
Confidence 444444556778889999999993 3333444455544
No 357
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=93.49 E-value=0.11 Score=62.35 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=7.3
Q ss_pred CCCcceeeeecc
Q 000790 67 FKVPRVASVAAS 78 (1283)
Q Consensus 67 ~k~~~~~~~~~~ 78 (1283)
.|..=|++|.-.
T Consensus 320 eKieyITsFGGg 331 (653)
T KOG2548|consen 320 EKIEYITSFGGG 331 (653)
T ss_pred ccceEEeecCCC
Confidence 344466777765
No 358
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=1.7 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=19.1
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhccc
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYT 628 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~ 628 (1283)
.+.++.||||.|||..+-+ |.+..+.
T Consensus 522 gsFlF~GPTGVGKTELAka-LA~~Lfg 547 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKA-LAEALFG 547 (786)
T ss_pred eEEEeeCCCcccHHHHHHH-HHHHhcC
Confidence 4788999999999987543 4555443
No 359
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.43 E-value=0.15 Score=56.71 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=54.7
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEE
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 679 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 679 (1283)
+.++|.|++|+|||.. ++.+...... .+.+|+|+.. ......++..+.. +
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~------~-------------------- 86 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD------G-------------------- 86 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT------T--------------------
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc------c--------------------
Confidence 4589999999999984 4545443322 2456766642 2222222222211 0
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcc---hhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS---TDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~---tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
....+... +..+++||||.+|.-.-. .+.++.++..+... +-++|+.|...
T Consensus 87 --~~~~~~~~------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~ 140 (219)
T PF00308_consen 87 --EIEEFKDR------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRP 140 (219)
T ss_dssp --SHHHHHHH------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-
T ss_pred --cchhhhhh------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCC
Confidence 00112222 457899999999953222 23566666665543 44777777554
No 360
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.42 E-value=0.081 Score=58.38 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=17.3
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 000790 604 VVVVGETGSGKTTQLTQYLLE 624 (1283)
Q Consensus 604 vII~gpTGSGKTtqi~q~Lle 624 (1283)
+||.|+.|||||+.+...+-.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 589999999999988765544
No 361
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.25 E-value=0.81 Score=52.97 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.5
Q ss_pred CeEEEEccCCCChHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~ 621 (1283)
.++++.||+|+|||+.+-.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35899999999999887543
No 362
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.24 E-value=0.41 Score=60.52 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD 730 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d 730 (1283)
.+.|.-.+..+....+.+-.++|+|||. -.++..-...+.+.+.....+
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaT-SalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEAT-SALDTETEALIQDALKKLLKG 514 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccc-cccCHHhHHHHHHHHHHHhcC
Confidence 3455555555555567777899999998 566666544455444433334
No 363
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.21 E-value=5 Score=50.68 Aligned_cols=313 Identities=19% Similarity=0.245 Sum_probs=154.5
Q ss_pred HHHHHHh---CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhcc-ccCCeeeEEE---
Q 000790 594 LLQVIRE---NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT-ELGDKVGYAI--- 666 (1283)
Q Consensus 594 il~~I~~---~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~-~lG~~VGy~i--- 666 (1283)
++++|.. +-.+-++|.-|-|||.++-+.|..+.-.....|.|+.|.-+-...+.+-|.+-|.. ..-..+-|.|
T Consensus 265 f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s 344 (1011)
T KOG2036|consen 265 FFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQS 344 (1011)
T ss_pred HHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhh
Confidence 4455543 45778899999999998777776554333457999999988777777666543321 0011122211
Q ss_pred ----------eeeeccCCCceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEe
Q 000790 667 ----------RFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 736 (1283)
Q Consensus 667 ----------r~e~~~s~~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlm 736 (1283)
+.+-.....-.|-|..|.-- ..|....+||||||-- +=+-+++.++ ..-+|+|
T Consensus 345 ~np~fkkaivRInifr~hrQtIQYi~P~D~-------~kl~q~eLlVIDEAAA------IPLplvk~Li----gPylVfm 407 (1011)
T KOG2036|consen 345 TNPDFKKAIVRINIFREHRQTIQYISPHDH-------QKLGQAELLVIDEAAA------IPLPLVKKLI----GPYLVFM 407 (1011)
T ss_pred cChhhhhhEEEEEEeccccceeEeeccchh-------hhccCCcEEEechhhc------CCHHHHHHhh----cceeEEE
Confidence 11101111112333333211 1267789999999973 3345566665 3458999
Q ss_pred ccCcCH----------HHHHHHhCCC--Ce------EeecCcccc-----eeeeecC-CChhhHHHHHHHHHHHHhhcC-
Q 000790 737 SATLNA----------QKFSDFFGSV--PI------FHIPGRTFP-----VNTLYSK-TPCEDYVEAAVKQAMTIHITS- 791 (1283)
Q Consensus 737 SATld~----------e~fa~~f~~~--pv------i~i~gr~~p-----V~i~y~~-~~~~dyv~~~v~~~l~i~~~~- 791 (1283)
+.|+|. ..+++.-... +. -.-.|++++ -.+.|.. .+++..+...+-.-.......
T Consensus 408 aSTinGYEGTGRSlSlKLlqqLr~qs~~~~~~~~k~~~~sg~~~kei~l~EsIRY~~gD~IE~WLn~lLcLDas~~~~~~ 487 (1011)
T KOG2036|consen 408 ASTINGYEGTGRSLSLKLLQQLRKQSRASNARENKSSSKSGRTLKEISLEESIRYAPGDPIEKWLNRLLCLDASNCLPIT 487 (1011)
T ss_pred eecccccccccceehHHHHHHHHHhccccccccCcccccccceeccccccccccCCCCCcHHHHHhhhhhhccccCCccc
Confidence 999851 1222211100 00 011233332 1233332 334444333221111111000
Q ss_pred -----CCCCEEEEcCC------HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEE
Q 000790 792 -----PPGDILIFMTG------QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCI 860 (1283)
Q Consensus 792 -----~~G~ILVFl~g------~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVL 860 (1283)
|...-|-+++. ....+. .|+..+ .+.|..+|-.-|.+.| ++...+....- +
T Consensus 488 ~g~P~Ps~CeLyyVnRdtLFSyh~~sE~---FLqr~m------------al~VSSHYKNSPNDLQ--llsDAPaH~LF-v 549 (1011)
T KOG2036|consen 488 SGCPSPSACELYYVNRDTLFSYHKASEA---FLQRLM------------ALYVSSHYKNSPNDLQ--LLSDAPAHHLF-V 549 (1011)
T ss_pred CCCCChhHceEEEEcchhhhcCCchHHH---HHHHHH------------HHHHHHhccCCchhhh--hhccCcccceE-E
Confidence 11112333321 111222 222222 2224445556566654 34445544444 4
Q ss_pred EecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEecChhhhhhhcCCC-
Q 000790 861 VATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPS- 939 (1283)
Q Consensus 861 VATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~- 939 (1283)
+-++|-..+=+||+|-+||+.++. --||..+..+-.+|.-|.+-...=-.+++......+...
T Consensus 550 Ll~PVd~~~~~iPdvlcviQv~lE----------------G~isr~si~~sL~~G~~a~GdlIpW~vseQf~D~~F~~l~ 613 (1011)
T KOG2036|consen 550 LLGPVDPSQNAIPDVLCVIQVCLE----------------GRISRQSIENSLRRGKRAAGDLIPWTVSEQFQDEDFPKLS 613 (1011)
T ss_pred EecCcCcccCCCCcceEEEEEeec----------------ceecHHHHHHHHhccccccCCccceehhhhhcccchhccc
Confidence 457788888899999999997752 357777888877776665422111222222222223222
Q ss_pred --------CcchhhccchhHHHHHHh
Q 000790 940 --------PVPEIQRTNLGNVVLLLK 957 (1283)
Q Consensus 940 --------~~PEI~r~~L~~vvL~Lk 957 (1283)
.-||-+...-....++|.
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL 639 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLL 639 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHH
Confidence 236666666666665554
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.28 Score=58.55 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=21.2
Q ss_pred HHHHHHHhC---CeEEEEccCCCChHHHHHHH
Q 000790 593 ELLQVIREN---QVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 593 eil~~I~~~---qvvII~gpTGSGKTtqi~q~ 621 (1283)
.+...+..+ ..++++||+|+|||+.+-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344555554 37889999999999887554
No 365
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.15 E-value=0.49 Score=53.05 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhc-----------ccCCCEEEEec
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDG-----------YTTNGIVGCTQ 637 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~-----------~~~~~~Il~tq 637 (1283)
+.+.+|+||.|+|||+.+.++++.-. ...+++|+++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 35789999999999999888876522 12356777775
No 366
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.44 Score=54.04 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=48.6
Q ss_pred CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchh---HHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHhCC
Q 000790 675 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGS 751 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD---~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f~~ 751 (1283)
+..|--.+-|.+.|.++...+.++-+++|+||-= -+++.. .++.+|+.+... +.-|++. |-|...+..|+..
T Consensus 134 ~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~e--g~tIl~v--tHDL~~v~~~~D~ 208 (254)
T COG1121 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQE--GKTVLMV--THDLGLVMAYFDR 208 (254)
T ss_pred CCcccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHC--CCEEEEE--eCCcHHhHhhCCE
Confidence 4456667888888888888889999999999965 344443 455666665443 4444444 4466667777653
No 367
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.13 E-value=0.22 Score=54.07 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=37.0
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATl 740 (1283)
-++.|...+..+....+.+..++|+||.- .+++.+....++..+.... ....+|++|--+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 46667766665555567788999999987 6777665444443333222 245556655544
No 368
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.13 E-value=0.29 Score=61.84 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=22.0
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcc-cCCCEEEEec
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQ 637 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tq 637 (1283)
+.++|.|++|+|||..+-.+..+... ..+..|+|+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45899999999999765433332211 1234566653
No 369
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.11 E-value=0.44 Score=57.98 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.4
Q ss_pred eEEEEccCCCChHHHHHHH
Q 000790 603 VVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~ 621 (1283)
.+|+.||+|+||||.+-.+
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999987553
No 370
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.38 Score=57.62 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=18.4
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcc
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGY 627 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~ 627 (1283)
.+++|.|+||+|||+++ .++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 35899999999999664 55555443
No 371
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.95 E-value=0.16 Score=62.97 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=35.0
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
|.......|.-.+|.+.|||||| ++.+..+-++||.+-.=.++ |++.=||-
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~h--V~FIlATT 157 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSH--VKFILATT 157 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccC--eEEEEecC
Confidence 44445556778999999999999 57777777888877543334 44444554
No 372
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.95 E-value=0.28 Score=64.68 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=83.5
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCC--CeeEEEecCcccccCCC
Q 000790 795 DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG--TRKCIVATNIAETSLTV 872 (1283)
Q Consensus 795 ~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G--~rKVLVATnIAEtGIdI 872 (1283)
++|||..-.....-+...|... .+..+.++|+++...|..+++.|..+ ..-++++|-.++.|||+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnL 779 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNL 779 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceee
Confidence 6999988777666665555432 36789999999999999999999875 56777788899999999
Q ss_pred CCeeEEEEcCCccceeccCCCCcccccccccCHHHHHH---HhcccCCCCCCEEEEecChhhhhh
Q 000790 873 DGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQ---RAGRAGRTGPGTCYRLYTESAYLN 934 (1283)
Q Consensus 873 p~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~Q---RaGRAGR~g~G~cyrLyt~~~~~~ 934 (1283)
-+...||. ||+ |..++...| |+-|.|+..+=..|+|.++...++
T Consensus 780 t~a~~vi~--------~d~----------~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 780 TGADTVIL--------FDP----------WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred cccceEEE--------ecc----------ccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 99999997 773 444554444 555556566788999999877544
No 373
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.34 Score=61.88 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=28.6
Q ss_pred HHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 688 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 688 r~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
..+...+.+..+.+|||||||. +..+..-.+++. +...|.--++++.+|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~-LEepp~~tifIL~tt 159 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKT-LEEPPSYAIFILATT 159 (614)
T ss_pred HHHhhCcccCCcEEEEEECccc--CCHHHHHHHHHH-HhCCCCCeEEEEEeC
Confidence 3344557788999999999994 333333344443 344444444444444
No 374
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.94 E-value=0.31 Score=52.27 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=65.2
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEec-chHHHHHHHHHHHHHHhccccCCeeeEEEee------ee
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRF------ED 670 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~LA~qvakrVa~e~~~~lG~~VGy~ir~------e~ 670 (1283)
|..+..+.|+|+.||||||.+-. |.-......|.|.+-- +..... ....+ ...++|.... ..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~-l~G~~~~~~G~i~~~g~~~~~~~--~~~~~--------~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEA-LFGLRPPASGEITLDGKPVTRRS--PRDAI--------RAGIAYVPEDRKREGLVL 91 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH-HhCCCCCCCceEEECCEECCccC--HHHHH--------hCCeEEecCCcccCcccC
Confidence 45789999999999999987543 3222222244444321 100000 00001 1123432211 00
Q ss_pred ccCCCceEEE---echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCc
Q 000790 671 VTGPSTLIKY---MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 671 ~~s~~t~I~~---~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATl 740 (1283)
..+..-.+.+ .+.|+..+..+....+.+..++|+||-- .+++... +..+++.+.. .+..+|+.|--+
T Consensus 92 ~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 164 (182)
T cd03215 92 DLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELAD--AGKAVLLISSEL 164 (182)
T ss_pred CCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 0000001111 6777777766666677888999999986 5666554 3444444322 245566655543
No 375
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.93 E-value=0.25 Score=57.16 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=29.8
Q ss_pred HHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec
Q 000790 687 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737 (1283)
Q Consensus 687 Lr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS 737 (1283)
.+.....+....+.+||||||+ .++.|..-.+++.+.....+..+|+.+
T Consensus 98 ~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 98 AEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 3333334445789999999999 455566555666554444455555544
No 376
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.92 E-value=0.34 Score=64.37 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.6
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHH
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLE 624 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle 624 (1283)
.+...+.++|+||.|+||||.+.+|+..
T Consensus 28 ~~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 28 GANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred cccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3345689999999999999999998854
No 377
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.41 Score=58.37 Aligned_cols=107 Identities=20% Similarity=0.366 Sum_probs=67.7
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEEec
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMT 682 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T 682 (1283)
.+++.||.|||||+.+.+..+...+ +-|=++.|......+-...++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F---PFvKiiSpe~miG~sEsaKc~~------------------------------ 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF---PFVKIISPEDMIGLSESAKCAH------------------------------ 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC---CeEEEeChHHccCccHHHHHHH------------------------------
Confidence 5889999999999998887766543 4566667754433332222211
Q ss_pred hhHHHHHHccCCCCCCCceEEEcCCCcCCcch--------hHHHHHHHHHHHhcC--CceEEEeccCcCHHHHHH
Q 000790 683 DGVLLRETLKDSDLDKYRVIVMDEAHERSLST--------DVLFGILKKVVARRR--DFKLIVTSATLNAQKFSD 747 (1283)
Q Consensus 683 ~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~t--------D~ll~lLk~il~~r~--dlklIlmSATld~e~fa~ 747 (1283)
+.....|..-+.+++||||++. |.++. ..+++.|.-+++..| +.|++++..|-..+.+.+
T Consensus 587 ----i~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~ 656 (744)
T KOG0741|consen 587 ----IKKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE 656 (744)
T ss_pred ----HHHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH
Confidence 1222334456678999999986 55542 356666776666544 358888877765555443
No 378
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.90 E-value=0.29 Score=56.34 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=22.4
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHH
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+..++.++++||||||||+.+-.++.
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHcCCcEEEECCCCCchhHHHHhhhc
Confidence 356789999999999999998766553
No 379
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.90 E-value=0.34 Score=61.52 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=41.3
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.|..+....+.+-.++|+||+= -.++.+-...++..+....++.-+|+.|--+
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 5567666666666678888999999997 5677766666665555555566677766654
No 380
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.86 E-value=0.6 Score=56.23 Aligned_cols=131 Identities=24% Similarity=0.366 Sum_probs=79.5
Q ss_pred CeEEEEccCCCChHHHHHH---HHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceE
Q 000790 602 QVVVVVGETGSGKTTQLTQ---YLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 678 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q---~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I 678 (1283)
.+++++|=-||||||.+.. |+.. ......+++.=..|-+|..+.+.+++..+..+ |.. ......+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-----f~~-----~~~~~Pv 168 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-----FGS-----GTEKDPV 168 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCce-----ecC-----CCCCCHH
Confidence 4688899999999998543 3333 22223445555778999888888877655432 111 1111111
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc--CHHHHHHHhCC
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL--NAQKFSDFFGS 751 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl--d~e~fa~~f~~ 751 (1283)
. +.+.-+.......+++||||=|- |.-.-+-|+.-++.+.. .+|+=-++++=|++ ++...+.-|+.
T Consensus 169 ~------Iak~al~~ak~~~~DvvIvDTAG-Rl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 169 E------IAKAALEKAKEEGYDVVIVDTAG-RLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred H------HHHHHHHHHHHcCCCEEEEeCCC-cccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 1 22222222335568999999998 54444455555555543 57887888888888 56666666653
No 381
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.86 E-value=0.19 Score=55.27 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.2
Q ss_pred hCCeEEEEccCCCChHHHHH
Q 000790 600 ENQVVVVVGETGSGKTTQLT 619 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~ 619 (1283)
.++.++|.||+|+||||.+-
T Consensus 28 ~~~~~~l~G~n~~GKstll~ 47 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLK 47 (204)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46899999999999999643
No 382
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.75 E-value=0.47 Score=57.19 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=73.2
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhccc--CCCEEEEecchHH-HHHHHHHHHHHHhccccCCeeeEEEeee--ecc--CC
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRV-AAMSVAKRVSEEMDTELGDKVGYAIRFE--DVT--GP 674 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~-LA~qvakrVa~e~~~~lG~~VGy~ir~e--~~~--s~ 674 (1283)
+..|+.|..|||||..+.+.++...+. .+..++|+-|+.. +..++...+...+. .+|...-+..... ... ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~-~~g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLS-IEGINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHH-HcCChhheeecCCccEEEecCC
Confidence 467899999999999987777766555 5678999888866 66667777654443 2332211111111 011 11
Q ss_pred CceEEEech-hHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcC
Q 000790 675 STLIKYMTD-GVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 675 ~t~I~~~T~-G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld 741 (1283)
++.|+|..- .--- .+ .....+.+++||||.+- .-+.+-.++..+ ........|++|.|+.
T Consensus 81 g~~i~f~g~~d~~~-~i---k~~~~~~~~~idEa~~~--~~~~~~~l~~rl-r~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 81 GKKFIFKGLNDKPN-KL---KSGAGIAIIWFEEASQL--TFEDIKELIPRL-RETGGKKFIIFSSNPE 141 (396)
T ss_pred CeEEEeecccCChh-Hh---hCcceeeeehhhhhhhc--CHHHHHHHHHHh-hccCCccEEEEEcCcC
Confidence 344555332 1000 01 11344789999999864 334444444443 2111212477888873
No 383
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.72 E-value=0.17 Score=60.06 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHH
Q 000790 594 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 642 (1283)
Q Consensus 594 il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~L 642 (1283)
+..++..+.+++|+|+|||||||.+-. |+... ....+++.+....++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~i-~~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKT-LISAI-PPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHH-HHccc-CCCCCEEEECCCccc
Confidence 344567889999999999999998744 44332 234467777766654
No 384
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.71 E-value=0.34 Score=52.93 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=36.3
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+...+.|...+..+....+.+.+++|+||.- .+++......++..+........+|++|-.+
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tiii~th~~ 184 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREEFTNSTILTIAHRL 184 (207)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 3445566666555555557788999999986 5666554333333333323355666666554
No 385
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.69 E-value=0.33 Score=57.07 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
+...+...+....+.+||||+||. ++....-.+||.+-.-.++..+|++|.-
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 344444456677899999999993 4555666677755443345556666543
No 386
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=92.68 E-value=0.022 Score=65.59 Aligned_cols=38 Identities=39% Similarity=0.512 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhc
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDG 626 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~ 626 (1283)
+.-..++.-.+.|.-+|+.|||||||||.+.-|-++..
T Consensus 261 pvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~ 298 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLF 298 (514)
T ss_pred hHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHH
Confidence 44455666666788999999999999998877777643
No 387
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.67 E-value=0.38 Score=62.33 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=40.4
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.+..+....+.+.+++|+||+= -.++......+.+.+....++..+|+.|--+
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiItHrl 660 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLVTHRT 660 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 5667766666666678889999999997 5666665555555555555566666666554
No 388
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.65 E-value=0.65 Score=51.10 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=40.3
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHh
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f 749 (1283)
+.-.+.|+..+..+....+.+..++|+||.- .+++......++..+.....+..+|+.|- +.+.+..+.
T Consensus 131 ~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sH--~~~~~~~~~ 199 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRKGRSIILTTH--SMDEAEALC 199 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHhc
Confidence 3345667666666555567788999999987 56766654444444433333444455444 344444443
No 389
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.57 E-value=0.2 Score=58.93 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHHHH-HHHHhCCeEEEEccCCCChHHHHHHHHHHhc--ccCCCEEEEecchHHH
Q 000790 591 RDELL-QVIRENQVVVVVGETGSGKTTQLTQYLLEDG--YTTNGIVGCTQPRRVA 642 (1283)
Q Consensus 591 Q~eil-~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~--~~~~~~Il~tqPrR~L 642 (1283)
+.++| .++..+.+++|+|+|||||||.+-. |+... .....+++++....++
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-L~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNA-IINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHhhhhcCCCceEEEEcCCCcc
Confidence 44444 4678899999999999999987643 44332 1223467776665544
No 390
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.54 E-value=0.61 Score=56.98 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCeEEEEccCCCChHHHHHH
Q 000790 590 VRDELLQVIRENQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 590 ~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q 620 (1283)
..+.++..+..++++|+.||+|+|||+.+-.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4456788888999999999999999998754
No 391
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.45 E-value=0.52 Score=51.78 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=36.3
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATl 740 (1283)
-.+.|+..+..+....+.+..++|+||.- .+++......+++.+.... .+..+|+.|-.+
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 140 ELSGGQQQRVAIARALANDPKIILADEPT-GNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 35566665555555567788999999987 5666654433333333222 245667766665
No 392
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.42 E-value=0.33 Score=61.33 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=21.8
Q ss_pred HHHHHHHhCC---eEEEEccCCCChHHHHHHHHH
Q 000790 593 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 593 eil~~I~~~q---vvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+...|..++ .+|++||.|+|||+.+-.+.-
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555553 468999999999998765443
No 393
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.41 E-value=0.21 Score=64.35 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc---CCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
.+-|.+++.. ....++|.|..|||||+.+..-+...... ....|+|+..++.+|.++-.|+...++
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3567676654 35688999999999999977655443221 235788888899999999999977664
No 394
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.32 E-value=0.19 Score=60.26 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHH
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrV 650 (1283)
|..+..++|.|++|+||||.+.+++..... .+++++++.-. +...|+..+.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E-Es~~qi~~Ra 129 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE-ESPEQIKLRA 129 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC-cCHHHHHHHH
Confidence 456789999999999999999888765433 34577776432 2234444443
No 395
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=92.26 E-value=0.17 Score=55.24 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=37.2
Q ss_pred chhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEec-cCc-CHHHHHH
Q 000790 682 TDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS-ATL-NAQKFSD 747 (1283)
Q Consensus 682 T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmS-ATl-d~e~fa~ 747 (1283)
+.|+-.+..+......+.+++|+||.- -+++.-....+...+.+.+..-++|++| --| +++.+++
T Consensus 135 S~G~kqkV~iARAlvh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 135 STGMKQKVAIARALVHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 345444444444456778999999987 5666655555555555554434455554 443 4555554
No 396
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.26 E-value=0.46 Score=53.33 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=47.1
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCcCHHHHHHHhCC
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQKFSDFFGS 751 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATld~e~fa~~f~~ 751 (1283)
..+.--+.||..|...+-..-.+.+++||||+= ---+..|.-..+..+... ..+..+|+.| -+...+.+|.+.
T Consensus 143 ~PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~VS--Hd~~~I~~~Cd~ 216 (249)
T COG1134 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVLVS--HDLGAIKQYCDR 216 (249)
T ss_pred CchhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEEEE--CCHHHHHHhcCe
Confidence 445566789999988776666778999999986 233444555555555544 3444444444 456667777654
No 397
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.24 E-value=0.2 Score=65.19 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc---cCCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY---TTNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~---~~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
+.+-|.+++.. ....++|.|..|||||+++..-+..... -....|+++..|+.+|.++.+|+.+.++
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 34667777654 3567899999999999987654433221 1234799999999999999999977654
No 398
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.21 E-value=0.18 Score=63.60 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhC--CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHH-HHHHH
Q 000790 587 IFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVA-KRVSE 652 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~--qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qva-krVa~ 652 (1283)
..|+|.++++++... +.|++++++-+|||+.+..++....-...+.+++++|+..+|.... .+|.-
T Consensus 17 ~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 17 RTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 458999999999765 5899999999999997666555544445678999999999998765 44543
No 399
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.17 E-value=0.24 Score=64.46 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHH---HHh-cccCCCEEEEecchHHHHHHHHHHHHHHhc
Q 000790 587 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYL---LED-GYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 587 i~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~L---le~-~~~~~~~Il~tqPrR~LA~qvakrVa~e~~ 655 (1283)
+.+-|.+++... ...++|.|..|||||+++..-+ ++. +. ....|+++.-|+.+|.++.+|+.+.++
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 457777777643 5678899999999999876544 332 22 245799999999999999999977654
No 400
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.09 E-value=0.76 Score=59.71 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.7
Q ss_pred CeEEEEccCCCChHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~ 621 (1283)
..+|+.||+|+||||.+-..
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999987543
No 401
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.05 E-value=0.44 Score=60.80 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=18.1
Q ss_pred hCCeEEEEccCCCChHHHHHHH
Q 000790 600 ENQVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~ 621 (1283)
.++.++|.||+||||||.+-..
T Consensus 109 ~~~illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999987543
No 402
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=92.05 E-value=0.37 Score=59.84 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=6.1
Q ss_pred EEEEecChhhh
Q 000790 922 TCYRLYTESAY 932 (1283)
Q Consensus 922 ~cyrLyt~~~~ 932 (1283)
+++.+|+++.|
T Consensus 494 v~~~~~~~~~~ 504 (509)
T TIGR01642 494 VVAAFYGEDCY 504 (509)
T ss_pred EEEEEeCHHHh
Confidence 45555555555
No 403
>PRK13695 putative NTPase; Provisional
Probab=92.03 E-value=0.5 Score=50.25 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.2
Q ss_pred eEEEEccCCCChHHHHHHH
Q 000790 603 VVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~ 621 (1283)
.++|+|++|+||||.+-..
T Consensus 2 ~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987653
No 404
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.02 E-value=0.23 Score=58.75 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHH
Q 000790 594 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 642 (1283)
Q Consensus 594 il~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~L 642 (1283)
+..++..+.+++|+|+|||||||.+-. |+... ....+|+++.-+.++
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~a-L~~~i-p~~~ri~tiEd~~El 199 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNA-ALREI-PAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHH-HHhhC-CCCCeEEEecCCCcc
Confidence 344567889999999999999998733 44433 334567666544443
No 405
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.00 E-value=0.36 Score=54.90 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.8
Q ss_pred HHhCCeEEEEccCCCChHHHH
Q 000790 598 IRENQVVVVVGETGSGKTTQL 618 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi 618 (1283)
|..|+++.|.||.||||||.+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLL 45 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLL 45 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHH
Confidence 457999999999999999975
No 406
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.93 E-value=0.24 Score=57.49 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=40.2
Q ss_pred CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC--ceEEEeccCc
Q 000790 675 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD--FKLIVTSATL 740 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d--lklIlmSATl 740 (1283)
+..+.-.+-|+-.+..+....+.+..++|+||-= .+++......+...+...... .-||+.|--+
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence 3445566778877776666678888999999987 677765444444444333322 3445444443
No 407
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.92 E-value=0.21 Score=54.49 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=22.1
Q ss_pred CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
..++|+|||||||||.+-..+.......++.|+++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~ 36 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI 36 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE
Confidence 36899999999999987543332221223455554
No 408
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.92 E-value=0.28 Score=57.56 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHHHHHH-HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHH
Q 000790 589 SVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 642 (1283)
Q Consensus 589 ~~Q~eil~~-I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~L 642 (1283)
+-+.++|.. +....+++|+|.|||||||.+-.++..-. ...+|+|+.-+.+|
T Consensus 160 ~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~--~~eRvItiEDtaEL 212 (355)
T COG4962 160 RRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFID--SDERVITIEDTAEL 212 (355)
T ss_pred HHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC--CcccEEEEeehhhh
Confidence 344445544 44556999999999999998755444332 23489998876555
No 409
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=91.91 E-value=0.22 Score=58.26 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=41.8
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccC-CCEEEEecc
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQP 638 (1283)
Q Consensus 584 ~LPi~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqP 638 (1283)
-.|..+.|..-+++|.++..++.+||-|+|||..+.-...+..... =.+|+.+-|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 3577789999999999999999999999999986544444433221 136888888
No 410
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.91 E-value=0.27 Score=57.21 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=40.6
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
..+..++.|+..+..+....+.+..++|+||.- .+++......+...+........+|+.|.-+
T Consensus 129 ~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l 192 (301)
T TIGR03522 129 KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGKDKTIILSTHIM 192 (301)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEcCCH
Confidence 345567788877776666678888999999987 5666654333333333333345566666555
No 411
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.90 E-value=0.087 Score=57.06 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=34.7
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHH-hcCCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~-~r~dlklIlmSATl 740 (1283)
-.+.|...+..+....+.+..++|+||.- .+++.+....+...+.. ...+.-+|+.|--+
T Consensus 123 ~LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 183 (195)
T PRK13541 123 SLSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183 (195)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 34556655555555557788999999998 67776544333333321 12345556655443
No 412
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.89 E-value=1.1 Score=51.67 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.6
Q ss_pred CeEEEEccCCCChHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q 620 (1283)
++++|.|||||||||.+-.
T Consensus 112 ~~~~i~g~~g~GKttl~~~ 130 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRD 130 (270)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 6899999999999998644
No 413
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.86 E-value=0.09 Score=57.43 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=40.2
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCC-ceEEEeccCcCHHHHHHHh
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD-FKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~d-lklIlmSATld~e~fa~~f 749 (1283)
.+.-.+.|...+..+....+.+..++|+||-= .+++......+++.+...... -..++++.+-+.+.+..+.
T Consensus 115 ~~~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~ 187 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLF 187 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhC
Confidence 34445677766666665667788999999976 566665433333333332221 2344454554444454443
No 414
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.83 E-value=0.37 Score=59.94 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.1
Q ss_pred hCCeEEEEccCCCChHHHH
Q 000790 600 ENQVVVVVGETGSGKTTQL 618 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi 618 (1283)
..+.+++.||+|||||+.+
T Consensus 215 ~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCcceEEECCCCCcHHHHH
Confidence 3467999999999999865
No 415
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.79 E-value=1 Score=52.17 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.7
Q ss_pred CeEEEEccCCCChHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~ 621 (1283)
+.++++||+|+|||+.+-.+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~i 50 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHII 50 (305)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56999999999999877543
No 416
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.79 E-value=0.34 Score=55.46 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=29.0
Q ss_pred CHHHHHHHHH-HHH-hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEe
Q 000790 587 IFSVRDELLQ-VIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 636 (1283)
Q Consensus 587 i~~~Q~eil~-~I~-~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 636 (1283)
..+.+.+.+. ++. .+..++|+|+|||||||.+-.++ .........|+.+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all-~~i~~~~~~iiti 114 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL-SELNTPEKNIITV 114 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH-hhhCCCCCeEEEE
Confidence 3344444444 443 34679999999999999875433 3332223345544
No 417
>PHA00149 DNA encapsidation protein
Probab=91.71 E-value=1.7 Score=49.87 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=85.7
Q ss_pred EEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEEech
Q 000790 604 VVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTD 683 (1283)
Q Consensus 604 vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~ 683 (1283)
-+|+|.-|-|||.++.-+++...+..+.+.+++--...-.....+-++.++-...... +.|.+....-.+-.|-|..+
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~--F~Vkg~ki~~~~k~igy~i~ 97 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKGEQFIYLRRYKSELKKKSKFFADIAQEFPNTE--FEVKGRKIYIKGKLIGYAIP 97 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcCcEEEEEEecchhhhhhhhhhHHHHHhCCCCc--eEEEccEEEEcCeEEEEEEe
Confidence 3566999999999999999988888787777764333222223344444443222111 11111111112233334433
Q ss_pred hHHHHHHccCCCCCCCceEEEcCCCc-C------CcchhHHHHHHHHHHHhcCCceEEEeccCc-CHHHHHHHhC
Q 000790 684 GVLLRETLKDSDLDKYRVIVMDEAHE-R------SLSTDVLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFFG 750 (1283)
Q Consensus 684 G~LLr~ll~d~~L~~~s~IIIDEaHE-R------sl~tD~ll~lLk~il~~r~dlklIlmSATl-d~e~fa~~f~ 750 (1283)
=..+..+ ..+...++.+|++||+-- + .-..+.|+.++-.+.+.+.++++|++|-.. ..+-+-.||+
T Consensus 98 LS~~q~~-Ks~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 98 LSTWQAL-KSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred hhhHHhh-cccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 2222222 335688999999999873 1 123457888888888889999999999765 2334445554
No 418
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.71 E-value=0.61 Score=59.92 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCC-------------------------------------
Q 000790 588 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN------------------------------------- 630 (1283)
Q Consensus 588 ~~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~------------------------------------- 630 (1283)
..+-..+|..+...++.++..|||+|||+.++--.+.-.....
T Consensus 27 ~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~ 106 (945)
T KOG1132|consen 27 LAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIAC 106 (945)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCcccc
Q ss_pred ----CEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCC--------------------------------
Q 000790 631 ----GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP-------------------------------- 674 (1283)
Q Consensus 631 ----~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~-------------------------------- 674 (1283)
.+|.+-.-|..-..|+.+.+ ...+-. -..+-.+-|-.-|.++
T Consensus 107 ~~~ipkIyyaSRTHsQltQvvrEl-rrT~Y~-vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~~~~~ 184 (945)
T KOG1132|consen 107 YTGIPKIYYASRTHSQLTQVVREL-RRTGYR-VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYKIVEE 184 (945)
T ss_pred ccCCceEEEecchHHHHHHHHHHH-hhcCCC-CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccccccccc
Q ss_pred -------------------------------------CceEEEechhHHHHHHccCCC---CCCCceEEEcCCC
Q 000790 675 -------------------------------------STLIKYMTDGVLLRETLKDSD---LDKYRVIVMDEAH 708 (1283)
Q Consensus 675 -------------------------------------~t~I~~~T~G~LLr~ll~d~~---L~~~s~IIIDEaH 708 (1283)
...|+||-...|++-.+.... |.+ ++||+||||
T Consensus 185 ~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 185 KSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
No 419
>PTZ00243 ABC transporter; Provisional
Probab=91.71 E-value=0.46 Score=66.87 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=33.6
Q ss_pred echhHHHHHHccCCCCCC-CceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 681 MTDGVLLRETLKDSDLDK-YRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~-~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.+.|.-.+..+....|.+ ..+|||||+= -.++...-..+.+.+.....+.-+|+.+--
T Consensus 1446 LSgGQrQrLaLARALL~~~~~ILlLDEAT-SaLD~~te~~Iq~~L~~~~~~~TvI~IAHR 1504 (1560)
T PTZ00243 1446 YSVGQRQLMCMARALLKKGSGFILMDEAT-ANIDPALDRQIQATVMSAFSAYTVITIAHR 1504 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 455665555555556764 7899999996 455554433444444444455555555543
No 420
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=91.68 E-value=0.35 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=17.4
Q ss_pred CCeEEEEccCCCChHHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~ 621 (1283)
++.++|+||.|||||+.+-..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i 41 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAI 41 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999985443
No 421
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.67 E-value=0.33 Score=52.54 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=35.8
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCcC
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLN 741 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATld 741 (1283)
.+.|...+..+....+.+..++|+||.- .+++.+....++..+.... ....+|+.|--++
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPT-SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCCC-cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 4555555555555557788999999987 6777664444444333221 2456666666543
No 422
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.65 E-value=0.69 Score=48.99 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.1
Q ss_pred CeEEEEccCCCChHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q 620 (1283)
-.++|.|++|+||||.+..
T Consensus 6 mki~ITG~PGvGKtTl~~k 24 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK 24 (179)
T ss_pred eEEEEeCCCCccHHHHHHH
Confidence 3589999999999998754
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.60 E-value=0.2 Score=62.22 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=36.5
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHH
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrV 650 (1283)
+..+..++|.||+|+||||..+|++.+... .+.+++++. .-+-..|+..+.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s-~eEs~~~i~~~~ 310 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFA-YEESRAQLLRNA 310 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE-eeCCHHHHHHHH
Confidence 446789999999999999999999887643 344665553 344455665555
No 424
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.58 E-value=0.77 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=17.4
Q ss_pred CeEEEEccCCCChHHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~L 622 (1283)
..+++.||+|+|||+.+-.+.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 579999999999999875433
No 425
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.7 Score=51.95 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=36.9
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchh---HHHHHHHHHHHhcCCceEEEeccC
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD---~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.++.|...+.++....+.+..++|+||.= -+++.- .++..|..+....+...+|+.|--
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 34455555555555557778899999976 455543 445555665555556677777654
No 426
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=0.38 Score=57.04 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 685 VLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 685 ~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.|...+...+....+.++|||+||. ++....-.+||.+-.=.++..+|++|.-
T Consensus 119 ~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 119 ALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 3555555556778899999999993 4555556667765443334444444443
No 427
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.49 E-value=0.36 Score=57.93 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=18.1
Q ss_pred HhCCeEEEEccCCCChHHHHHH
Q 000790 599 RENQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 599 ~~~qvvII~gpTGSGKTtqi~q 620 (1283)
..+..++|+|||||||||.+-.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 4567889999999999998633
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.48 E-value=0.2 Score=44.85 Aligned_cols=18 Identities=44% Similarity=0.763 Sum_probs=16.0
Q ss_pred CCeEEEEccCCCChHHHH
Q 000790 601 NQVVVVVGETGSGKTTQL 618 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi 618 (1283)
+.+++|+|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999984
No 429
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.48 E-value=1.9 Score=50.53 Aligned_cols=127 Identities=18% Similarity=0.272 Sum_probs=70.8
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEE------ecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccC
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC------TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG 673 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~------tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s 673 (1283)
+.+.||++||-|||||+.+--.|.+ ....+...++ ++--+.+...++..++.++... +..+|- |..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs---fte--- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS---FTE--- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc---cch---
Confidence 4678999999999999887665555 2222222221 2335667777777777766532 111110 000
Q ss_pred CCceEEEechhHHHHHHccCCCCCCCc-eEEEcCCCcCCc--chhHHHHHHHHHHHhcCCceEEEeccCcCH
Q 000790 674 PSTLIKYMTDGVLLRETLKDSDLDKYR-VIVMDEAHERSL--STDVLFGILKKVVARRRDFKLIVTSATLNA 742 (1283)
Q Consensus 674 ~~t~I~~~T~G~LLr~ll~d~~L~~~s-~IIIDEaHERsl--~tD~ll~lLk~il~~r~dlklIlmSATld~ 742 (1283)
+-..||..+..+..-.... ++|+||++--.. +.-++..++......+..+-||++|--+|.
T Consensus 120 --------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 120 --------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred --------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 1123444444443344443 567888874222 223555666665555666777777777763
No 430
>PF12846 AAA_10: AAA-like domain
Probab=91.38 E-value=0.18 Score=57.27 Aligned_cols=42 Identities=36% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAA 643 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA 643 (1283)
|.+++|+|+||||||+.+.. ++...+..+..++++=|.....
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRRGPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHcCCCEEEEcCCchHH
Confidence 57899999999999988774 4455555566777776664443
No 431
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.36 E-value=0.35 Score=56.83 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecch
Q 000790 597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 639 (1283)
Q Consensus 597 ~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 639 (1283)
-+..+..+.|.||+||||||.+++++.+... .++.++++-.-
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E 92 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAE 92 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEccc
Confidence 3556789999999999999999888777543 35667666443
No 432
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.36 E-value=0.67 Score=52.87 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=67.1
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHH---HHHHHHHHHHHhccccCCeeeEEEeeeeccCC
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA---AMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 674 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~L---A~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~ 674 (1283)
|..+.++-|+|+.||||||..-. |+...-...|.|++- ..... .....+++.+.+ ..+|..--+.-++-.
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~-i~~L~~pt~G~i~f~-g~~i~~~~~~~~~~~v~elL-~~Vgl~~~~~~ryPh---- 108 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRL-ILGLEEPTSGEILFE-GKDITKLSKEERRERVLELL-EKVGLPEEFLYRYPH---- 108 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHH-HHcCcCCCCceEEEc-CcchhhcchhHHHHHHHHHH-HHhCCCHHHhhcCCc----
Confidence 56899999999999999998533 222222234555442 11111 112223332222 122211101111111
Q ss_pred CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchh---HHHHHHHHHHHhcCCceEEEeccCc
Q 000790 675 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 675 ~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD---~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
-...|...|..+.....-+-++||.||.- -.++.. ..+.+|+++... -++..+++|--+
T Consensus 109 -----elSGGQrQRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL 170 (268)
T COG4608 109 -----ELSGGQRQRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQEE-LGLTYLFISHDL 170 (268)
T ss_pred -----ccCchhhhhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHHHH-hCCeEEEEEEEH
Confidence 12345555554444455667899999987 455553 455566665543 356777777665
No 433
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.36 E-value=0.4 Score=59.39 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhccc-----CCCEEEEecchHHHHHHHHHHH
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-----TNGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~-----~~~~Il~tqPrR~LA~qvakrV 650 (1283)
+-|.+||.. ..|+.+||.|..||||||++++-+.-..+. ..+.|+++.|.++.+.-++..+
T Consensus 215 kEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 215 KEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred HhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc
Confidence 455555532 467899999999999999987755443332 2345999999999987666555
No 434
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.35 E-value=1 Score=50.24 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=38.9
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHH---HHHHHHHHhcCCceEEEeccCc
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLF---GILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll---~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.-++.|+..+..+....+.+..++|+||.= .+++..... .+|+.+... ....+|+.|-.+
T Consensus 129 ~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 193 (236)
T TIGR03864 129 KVRELNGGHRRRVEIARALLHRPALLLLDEPT-VGLDPASRAAIVAHVRALCRD-QGLSVLWATHLV 193 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCh
Confidence 34456777777766666667788999999987 667665444 444443321 245566666554
No 435
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.34 E-value=0.59 Score=57.60 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHhCC---eEEEEccCCCChHHHHHHHHH
Q 000790 593 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 593 eil~~I~~~q---vvII~gpTGSGKTtqi~q~Ll 623 (1283)
.+...+..++ .+|+.||+|+|||+.+-.+.-
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3445555553 478999999999998755443
No 436
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.34 E-value=0.24 Score=56.03 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=39.1
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHH---HHHHHHHHhcCCceEEEeccCc
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLF---GILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll---~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.-.+.|...+..+....+.+-+++|+||.- ..++..... .+|+.+... .+.-+|+.|--+
T Consensus 112 ~~~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsHd~ 176 (246)
T cd03237 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAEN-NEKTAFVVEHDI 176 (246)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 34456778877777766778888999999986 566665444 444444322 234556655543
No 437
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.22 E-value=0.28 Score=53.50 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=36.8
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCc
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.-.+.|+..+..+....+.+..++|+||.- .+++... +..+|+.+.. ...-+|+.|--+
T Consensus 123 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~ 186 (205)
T cd03226 123 HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAA--QGKAVIVITHDY 186 (205)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 34456677766665555557778999999987 5666654 4444444422 244555555543
No 438
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=91.20 E-value=0.65 Score=65.21 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=35.5
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.+..+....|.+-.+|||||+= -.++.+.-..+.+.+....++.-+|+.+-=+
T Consensus 1354 LSgGQrQrL~LARALLr~~~ILlLDEaT-S~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1354 LSNGHKQLMCLARSILSKAKILLLDEPS-AHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 3455555555555567788899999987 4555544444444554455666666555443
No 439
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.13 E-value=0.22 Score=54.09 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=36.0
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccC
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSAT 739 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSAT 739 (1283)
.-.+.|+..+..+....+.+..+||+||.- .+++......+++.+... .....+|+.|--
T Consensus 126 ~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 126 AQLSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 345666666655555567788999999988 667665444443333322 224456666553
No 440
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.11 E-value=0.18 Score=55.72 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=23.9
Q ss_pred ceEEEechhHHHHHHccCCCCCCCceEEEcCCC
Q 000790 676 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH 708 (1283)
Q Consensus 676 t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaH 708 (1283)
..+..++.|+..+..+....+.+..++|+||.-
T Consensus 100 ~~~~~lS~G~~qrv~la~al~~~p~llllDEP~ 132 (213)
T PRK15177 100 DRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL 132 (213)
T ss_pred chHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 344556778777766666667788999999954
No 441
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.09 E-value=0.35 Score=53.69 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhc
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDG 626 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~ 626 (1283)
+..+.++.|+|++|||||+.+.++++...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHee
Confidence 45678999999999999999988876643
No 442
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.08 E-value=0.49 Score=54.48 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=37.9
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|+..+..+....+.+-.++|+||.= .+++......+...+.....+..+|+.|--+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~~~tii~isH~~ 197 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFADCTVILSEHRI 197 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 6677777766666678888999999986 5666654444444444334455555555544
No 443
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.06 E-value=0.88 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=22.8
Q ss_pred HHHHHHhCCeEEEEccCCCChHHHHHH
Q 000790 594 LLQVIRENQVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 594 il~~I~~~qvvII~gpTGSGKTtqi~q 620 (1283)
+++.+..+.|+|+.||+|+|||..+..
T Consensus 202 l~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 202 LLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred hHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 446788999999999999999977654
No 444
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.05 E-value=1 Score=53.28 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=31.7
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
+...+...+....+.+||||++| .++....-.+++.+-.......+|++|.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 44455556677889999999999 4566555566665443333444455333
No 445
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.02 E-value=0.21 Score=54.89 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=38.1
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCc
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATL 740 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATl 740 (1283)
+.-.+.|+..+..+....+.+..++|+||.. .+++......++..+.... ....+|+.|.-+
T Consensus 126 ~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 126 PEQLSGGQRQRVALARCLVRPNPILLLDEPF-SALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3346667766665555557778999999998 6777665444444443322 245566655553
No 446
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.01 E-value=0.55 Score=59.69 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=42.1
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|...|..+....+.+-.++|+||+- -.++.+....+++.+....++..+|+.|.-+
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDELMKGRTTFIIAHRL 530 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence 4567666666666678889999999997 6777776666666666555566667666554
No 447
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.91 E-value=2 Score=50.18 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=54.6
Q ss_pred EEEccCCCChHHHHHHHHHHhcccCCC--EEEEecchHHHHHH-HHH---HHHHHhccccCCeeeEEEeeeec--cCCCc
Q 000790 605 VVVGETGSGKTTQLTQYLLEDGYTTNG--IVGCTQPRRVAAMS-VAK---RVSEEMDTELGDKVGYAIRFEDV--TGPST 676 (1283)
Q Consensus 605 II~gpTGSGKTtqi~q~Lle~~~~~~~--~Il~tqPrR~LA~q-vak---rVa~e~~~~lG~~VGy~ir~e~~--~s~~t 676 (1283)
||.++.|+|||+.+...++...+...+ .++++ |+...+.. +.. .+...... . ..+.+.-..... ...+.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~nG~ 77 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-W-FEIKFNEWNDRKIILPNGS 77 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-T-TS--EEEE-SSEEEETTS-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-h-cCcccccCCCCcEEecCce
Confidence 578999999999988877776655543 55555 65554444 333 22111111 1 111111111111 12344
Q ss_pred eEEEechhH--HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 677 LIKYMTDGV--LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 677 ~I~~~T~G~--LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.|.+.+..- -...+.. ..+++|||||+-. +.-+....++............++.|-|.
T Consensus 78 ~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 78 RIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred EEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 466665321 1111111 4678999999652 22333444454444444434333555555
No 448
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=90.89 E-value=0.68 Score=47.39 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHh
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED 625 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~ 625 (1283)
.++.++-.....+..|+|+|++||||++++ .+|...
T Consensus 9 ~l~~~l~~~a~~~~pvli~GE~GtGK~~~A-~~lh~~ 44 (138)
T PF14532_consen 9 RLRRQLERLAKSSSPVLITGEPGTGKSLLA-RALHRY 44 (138)
T ss_dssp HHHHHHHHHHCSSS-EEEECCTTSSHHHHH-HCCHHT
T ss_pred HHHHHHHHHhCCCCcEEEEcCCCCCHHHHH-HHHHhh
Confidence 455566666677889999999999999864 445554
No 449
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.88 E-value=0.72 Score=51.27 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=39.8
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCcCHHHHHHHh
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATld~e~fa~~f 749 (1283)
.-++.|+..+..+....+.+..++|+||-- .+++......++..+.... ...-+|+.|-- .+.+..+.
T Consensus 139 ~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~--~~~~~~~~ 208 (233)
T cd03258 139 AQLSGGQKQRVGIARALANNPKVLLCDEAT-SALDPETTQSILALLRDINRELGLTIVLITHE--MEVVKRIC 208 (233)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhC
Confidence 345667766666555567788999999987 6777654444333333221 24456665554 44444444
No 450
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.84 E-value=0.98 Score=53.40 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=41.1
Q ss_pred eEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHh
Q 000790 677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFF 749 (1283)
Q Consensus 677 ~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f 749 (1283)
...-.+.|...+..+....+.+..+||+||.= .+++......+...+.....+..+|+.|- +.+.+.++.
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt-s~LD~~~~~~i~~~i~~l~~~~Tii~iTH--~l~~i~~~~ 291 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPT-SALDPIATAKIEELILELKKKYSIIIVTH--SMAQAQRIS 291 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 34456777777776666667888999999987 56666544443333333333444444443 444444443
No 451
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=90.84 E-value=0.66 Score=65.33 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=33.0
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.+.|.-.+..+....|.+-.+||+|||= -.++.+--..+.+.+....++.-+|+.+--
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaT-SalD~~Te~~Iq~~l~~~~~~~TvI~IAHR 1479 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEAT-AAVDLETDNLIQSTIRTQFEDCTVLTIAHR 1479 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3556655555556667788899999986 345544333333333334455555555443
No 452
>PLN03232 ABC transporter C family member; Provisional
Probab=90.80 E-value=0.59 Score=65.70 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=34.1
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.+..+....|.+-.++|+|||= -.++.+--..+.+.+....++.-+|+.+--+
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEAT-SaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEAT-ASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 3455555555555557777899999986 4555544333444444444566666655554
No 453
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=90.79 E-value=0.32 Score=52.40 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecch
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 639 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 639 (1283)
++..++.||-+||||+.++..+..... .+.+++++.|.
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~-~~~~v~~~kp~ 38 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEI-AGKKVLVFKPA 38 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEEES
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 356789999999999999887755433 35678888774
No 454
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=90.79 E-value=0.65 Score=58.17 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=40.6
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.|..+....+.+.+++|+||+= -.++.+....++..+.....+.-+|+.|--+
T Consensus 459 LSgGq~qri~laRal~~~~~ililDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 459 LSGGQAQRLALARAFLRDAPLLLLDEPT-AHLDAETEALVTEALRALAQGRTVLLVTHRL 517 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 4556666666666668888999999987 6777766666666655555566667766654
No 455
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.77 E-value=0.77 Score=58.27 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=39.0
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.|..+....+.+-.++|+||+= -.++.+....+...+.....+..+|+.|--+
T Consensus 476 LSgGqrqRialARall~~~~ililDE~t-s~lD~~t~~~i~~~l~~~~~~~tviiitHr~ 534 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPT-EGLDAETERQILELLAEHAQNKTVLMITHRL 534 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEecCh
Confidence 5567766666666678888999999987 5667665555555555444455556655543
No 456
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.70 E-value=0.65 Score=50.87 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=38.6
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCcCHHHHHHH
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATLNAQKFSDF 748 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATld~e~fa~~ 748 (1283)
.-.+.|+..+..+....+.+..++|+||.- .+++... +..+|+.+.. .+..+|+.|-- .+.+..+
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~--~~~~~~~ 203 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPT-GNLDPDLSERILDLLKRLNK--RGTTVIVATHD--LSLVDRV 203 (214)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCC--HHHHHHh
Confidence 345667666665555567788999999987 6676654 4444444322 24455665554 4444443
No 457
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.69 E-value=0.16 Score=54.76 Aligned_cols=59 Identities=15% Similarity=0.322 Sum_probs=35.1
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSAT 739 (1283)
+.-.+.|+..+..+....+.+-.+||+||-= .+++... +..+|+.+.. ....+|+.|--
T Consensus 125 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~--~~~tili~sH~ 186 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPT-AGLDPAGREQMLAILRRLRA--EGMTVVISTHD 186 (190)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHH--cCCEEEEEeec
Confidence 3345666665555555556778899999976 5666554 4444444422 24566666644
No 458
>PRK09354 recA recombinase A; Provisional
Probab=90.67 E-value=0.42 Score=56.77 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchH
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRR 640 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR 640 (1283)
+..+.++.|.||+||||||..++++.+... .++.++++-.--
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~ 98 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEH 98 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCcc
Confidence 445789999999999999999998877543 356677665433
No 459
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.71 Score=54.73 Aligned_cols=52 Identities=31% Similarity=0.471 Sum_probs=36.7
Q ss_pred ccccchhhhhhHHHHHHHhcCCCHHHHHHHHHHHHh-CCeEEEEccCCCChHHHH
Q 000790 565 KGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRE-NQVVVVVGETGSGKTTQL 618 (1283)
Q Consensus 565 ~~~~~~~~~~~~~l~~~R~~LPi~~~Q~eil~~I~~-~qvvII~gpTGSGKTtqi 618 (1283)
+|.........+.|++.---|||+-= ++++-|+. =+-|+++||+|+|||+.+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mP--e~F~GirrPWkgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMP--EFFKGIRRPWKGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhH--HHHhhcccccceeeeeCCCCCcHHHHH
Confidence 45555566677888888888998632 23333332 378999999999999764
No 460
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.65 E-value=0.23 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=18.6
Q ss_pred HHHHHHhCC--eEEEEccCCCChHHHH
Q 000790 594 LLQVIRENQ--VVVVVGETGSGKTTQL 618 (1283)
Q Consensus 594 il~~I~~~q--vvII~gpTGSGKTtqi 618 (1283)
+++.+.++. ++++.||+|+||||.+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHH
Confidence 444455443 4799999999999985
No 461
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.60 E-value=0.89 Score=49.44 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=37.1
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhH---HHHHHHHHHHhcCCceEEEeccCc
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~---ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+.-.+.|+..+..+....+.+..++|+||.- .+++... +..+|+.+.. ....+|+.|--+
T Consensus 132 ~~~lS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 194 (206)
T TIGR03608 132 IYELSGGEQQRVALARAILKDPPLILADEPT-GSLDPKNRDEVLDLLLELND--EGKTIIIVTHDP 194 (206)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 3345666666655555567788999999987 5666554 4444444432 245666666554
No 462
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=90.54 E-value=1.1 Score=54.55 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCeEEEEccCCCChHHHHHHHHH
Q 000790 592 DELLQVIRENQVVVVVGETGSGKTTQLTQYLL 623 (1283)
Q Consensus 592 ~eil~~I~~~qvvII~gpTGSGKTtqi~q~Ll 623 (1283)
.++-.++..+.+.++..|+|+|||..++-.++
T Consensus 26 ~elKrsLDakGh~llEMPSGTGKTvsLLSli~ 57 (755)
T KOG1131|consen 26 RELKRSLDAKGHCLLEMPSGTGKTVSLLSLII 57 (755)
T ss_pred HHHHHhhccCCcEEEECCCCCCcchHHHHHHH
Confidence 45556677788999999999999987665544
No 463
>PLN03130 ABC transporter C family member; Provisional
Probab=90.54 E-value=0.7 Score=65.31 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=33.5
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|.-.+..+....|.+-.++|+|||= -.++.+--..+.+.+.....+.-+|+.+--+
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEAT-SaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL 1433 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEAT-AAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1433 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEeCCh
Confidence 3455555555555557777899999986 4555443333444444444555555555443
No 464
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.54 E-value=0.71 Score=50.39 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=36.3
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSAT 739 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSAT 739 (1283)
+.-.+.|...+..+....+.+..++|+||.- .+++......+++.+... .....+|++|--
T Consensus 127 ~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3345666666655555567788999999987 677765444433333222 224456666554
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.47 E-value=0.36 Score=57.32 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=24.8
Q ss_pred hCCeEEEEccCCCChHHHHHHHHHHhccc-CCCEEEEec
Q 000790 600 ENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQ 637 (1283)
Q Consensus 600 ~~qvvII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tq 637 (1283)
.+..++|+|||||||||.+-. ++..... .++.|+.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a-l~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS-MIDYINKNAAGHIITIE 158 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH-HHHhhCcCCCCEEEEEc
Confidence 467999999999999998744 3333322 235565543
No 466
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.46 E-value=0.54 Score=59.42 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHh------CCeEEEEccCCCChHHHHHHHHHHhcc
Q 000790 589 SVRDELLQVIRE------NQVVVVVGETGSGKTTQLTQYLLEDGY 627 (1283)
Q Consensus 589 ~~Q~eil~~I~~------~qvvII~gpTGSGKTtqi~q~Lle~~~ 627 (1283)
+...+++..... .+++++|||.|-||||.+=......||
T Consensus 308 ~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 308 PTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred cchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence 344455555542 479999999999999987444434333
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.43 E-value=0.42 Score=55.91 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecch
Q 000790 595 LQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 639 (1283)
Q Consensus 595 l~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 639 (1283)
--.+..+.+++|+|+|||||||.+-. |+... .....++++...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~a-l~~~~-~~~~~iv~ied~ 180 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKS-LVDEI-PKDERIITIEDT 180 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHH-HHccC-CccccEEEEcCc
Confidence 34567889999999999999998743 44332 223456555433
No 468
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.41 E-value=0.38 Score=53.69 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=36.4
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccC
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 739 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSAT 739 (1283)
.-.+.|+..+..+....+.+..++|+||.- .+++......+.+.+.....+..+|+.|--
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~ 197 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALDRAMKGRTTIVIAHR 197 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 345667666665555567788999999987 677765444444433333334555555544
No 469
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.39 E-value=0.25 Score=54.00 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=36.3
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccC
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSAT 739 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSAT 739 (1283)
+.-.+.|+..+..+....+.+..++|+||.- .+++......++..+.... .+..+|+.|--
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPT-AGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3456677766665555567788999999986 5666654433333333222 24555555554
No 470
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=90.33 E-value=0.81 Score=57.97 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=39.3
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|...+..+....+.+..++|+||.= -.++.+-...++..+.....+..+|+.|--+
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEpt-saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 4566666666655667788999999986 4566655555555555555566777777665
No 471
>PRK10436 hypothetical protein; Provisional
Probab=90.32 E-value=0.53 Score=58.08 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHH-H-HhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEE
Q 000790 585 LPIFSVRDELLQV-I-RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG 634 (1283)
Q Consensus 585 LPi~~~Q~eil~~-I-~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il 634 (1283)
|-..+.+.+.+.. + ..+..++|+|||||||||.+-. ++.........|+
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a-~l~~~~~~~~~i~ 250 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS-ALQTLNTAQINIC 250 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHH-HHHhhCCCCCEEE
Confidence 3334444444443 3 3567899999999999998744 3443333333443
No 472
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.32 E-value=0.71 Score=54.46 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 686 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 686 LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
+...+...+....+.++|||+||. ++....-++||.+-.-.++.-+|++|.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred HHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 444455556778899999999993 445555566666544333444444433
No 473
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.30 E-value=1.1 Score=58.07 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHhHhcCCCeeEEEecC-cccccC
Q 000790 792 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN-IAETSL 870 (1283)
Q Consensus 792 ~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~~~er~~I~~~f~~G~rKVLVATn-IAEtGI 870 (1283)
.+.++||.+|++.-+.+.+..+.+.+..+ ++.+..+||+++..++..++.....|...|||+|. .+...+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~---------~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v 379 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPL---------GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV 379 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhc---------CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc
Confidence 35689999999999998888887765432 57899999999999999999999999999999997 445567
Q ss_pred CCCCeeEEE
Q 000790 871 TVDGIFYVI 879 (1283)
Q Consensus 871 dIp~V~~VI 879 (1283)
.+.++.+||
T Consensus 380 ~~~~l~lvV 388 (681)
T PRK10917 380 EFHNLGLVI 388 (681)
T ss_pred hhcccceEE
Confidence 788888887
No 474
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=90.27 E-value=0.96 Score=50.02 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=37.6
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
+.-.+.|+..+..+....+.+..+||+||-= .+++......+...+.....+..+|++|-.+
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 3445667766666555567788999999976 5666654444433333332345566666554
No 475
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.25 E-value=0.38 Score=53.28 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=36.9
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.-++.|+..+..+....+.+..+||+||.= .+++......++..+.....+..+|+.|-.+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 198 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 345667666666665667888999999986 5676654433333333322345566666544
No 476
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.25 E-value=1.4 Score=52.16 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEE
Q 000790 687 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 735 (1283)
Q Consensus 687 Lr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIl 735 (1283)
...+...+....+.+|||||||. ++....-.+||.+-.-.++..+|+
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEE
Confidence 33344445677899999999994 334344445555433233344444
No 477
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.23 E-value=1.4 Score=48.38 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=38.7
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCcCHHHHHHH
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATLNAQKFSDF 748 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATld~e~fa~~ 748 (1283)
.-.+.|+..+..+....+.+..++|+||.- .+++......++..+.... .+..+|+.|-- .+.+..+
T Consensus 129 ~~LSgG~~qrl~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~--~~~~~~~ 197 (213)
T cd03259 129 HELSGGQQQRVALARALAREPSLLLLDEPL-SALDAKLREELREELKELQRELGITTIYVTHD--QEEALAL 197 (213)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC--HHHHHHh
Confidence 346677766666666667788999999987 5666654444433333221 23445555444 3334443
No 478
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=90.17 E-value=0.47 Score=57.81 Aligned_cols=13 Identities=0% Similarity=-0.404 Sum_probs=7.4
Q ss_pred ccccchhhHhhhc
Q 000790 46 AQSGLGVRAVEKG 58 (1283)
Q Consensus 46 s~lgld~la~~kr 58 (1283)
+..|++.++.|-+
T Consensus 461 ~e~~epvin~Ap~ 473 (757)
T KOG4368|consen 461 HRMPHPGINEAPP 473 (757)
T ss_pred ccCCccccccCCC
Confidence 4555666655555
No 479
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.16 E-value=1.1 Score=49.70 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=34.7
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHH---HHHHHHHHHhcCCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVL---FGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~l---l~lLk~il~~r~dlklIlmSATl 740 (1283)
-.+.|...+..+....+.+..++|+||.- .+++.+.. ..+|+.+... ....+|+.|--+
T Consensus 146 ~LS~Ge~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~ 207 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPT-GNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDL 207 (228)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 35566655555555557778999999987 67776544 3444443322 234556555543
No 480
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.10 E-value=0.95 Score=58.77 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=39.3
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|...+..+....+.+..++|+||+= -+++.+....++..+....++..+|+.|--+
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~ 652 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEAT-SALDYESEALIMRNMREICRGRTVIIIAHRL 652 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 5567666666666668888999999997 5666665555555554444566666666554
No 481
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.08 E-value=0.17 Score=55.70 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=36.1
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
-.+.|+..+..+....+.+..++|+||.- .+++......+++.+........+|+.|--+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 199 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPT-SAMDMNSEERLKERLRQLLGDKTLIIITHRP 199 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 45666666655555557778999999986 5666654444444443333344555555544
No 482
>CHL00176 ftsH cell division protein; Validated
Probab=90.08 E-value=1.2 Score=57.13 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCeEEEEccCCCChHHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQY 621 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~ 621 (1283)
.+.+++.||+|+|||+.+-..
T Consensus 216 p~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999876443
No 483
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=90.04 E-value=0.26 Score=54.39 Aligned_cols=60 Identities=10% Similarity=0.259 Sum_probs=38.2
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHH---HHHHHHHHHhcCCceEEEeccCcC
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVL---FGILKKVVARRRDFKLIVTSATLN 741 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~l---l~lLk~il~~r~dlklIlmSATld 741 (1283)
-++.|+..+..+....+.+.+++|+||.- .+++.... ..+|+.+.. ..+..+|+.|--++
T Consensus 141 ~lS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sh~~~ 203 (220)
T TIGR02982 141 NLSGGQKQRVAIARALVHRPKLVLADEPT-AALDSKSGRDVVELMQKLAR-EQGCTILIVTHDNR 203 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 45667666665555567788999999998 67776654 444444432 12466777766654
No 484
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=89.99 E-value=1.5 Score=56.03 Aligned_cols=45 Identities=33% Similarity=0.405 Sum_probs=36.0
Q ss_pred CCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHH
Q 000790 601 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 651 (1283)
Q Consensus 601 ~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa 651 (1283)
-.+++|.|--|+||||.+ +.|.+.. .++++.||+++|..+...+.
T Consensus 71 Fs~~~itG~AGsGKst~i-~~l~~~l-----~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 71 FSVYLITGTAGAGKSTSI-QTLNENL-----DCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred eEEEEEecCCCCChHHHH-HHHHHhc-----CEEEEcchHHHHHhhhcccc
Confidence 368999999999999987 4455543 57899999999999876443
No 485
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.94 E-value=0.92 Score=60.04 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.4
Q ss_pred eEEEEccCCCChHHHHHHHHHHhcc
Q 000790 603 VVVVVGETGSGKTTQLTQYLLEDGY 627 (1283)
Q Consensus 603 vvII~gpTGSGKTtqi~q~Lle~~~ 627 (1283)
.++++||||+|||+.+-. |.+..+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~-LA~~l~ 564 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKA-LASYFF 564 (821)
T ss_pred EEEEECCCCCcHHHHHHH-HHHHhc
Confidence 478999999999987543 344443
No 486
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.92 E-value=2.4 Score=49.94 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEecc
Q 000790 685 VLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 738 (1283)
Q Consensus 685 ~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSA 738 (1283)
.+...+...+....+.+||||+||. ++....-.+||.+ ...|+..+|+++.
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~L-EEPp~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTL-EEPGNGTLILIAP 161 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHH-hCCCCCeEEEEEC
Confidence 3455555567788999999999993 4444444555554 4455655555544
No 487
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.89 E-value=0.78 Score=58.37 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=37.8
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|...+..+....+.+..++|+||+= -+++.+....+...+.....+.-+|+.|--+
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpt-s~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEAT-SALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 4566666666666667888999999987 5666665555544444444455566655543
No 488
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=89.87 E-value=0.79 Score=56.98 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=11.4
Q ss_pred CCEEEEcCCHHHHHHHHHHH
Q 000790 794 GDILIFMTGQDEIEAACFAL 813 (1283)
Q Consensus 794 G~ILVFl~g~~eIe~l~~~L 813 (1283)
|.+.|-+.+.+++..+...|
T Consensus 465 G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 465 GKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred ceEEEEECCHHHHHHHHHHc
Confidence 44555566666666555544
No 489
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=89.85 E-value=2 Score=47.04 Aligned_cols=19 Identities=47% Similarity=0.744 Sum_probs=15.7
Q ss_pred CeEEEEccCCCChHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q 620 (1283)
...+|+||+|+||||.+-.
T Consensus 22 gl~~i~G~NGsGKStll~a 40 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTA 40 (198)
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4668999999999998643
No 490
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.82 E-value=1.5 Score=51.89 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCeEEEEccCCCChHHHHHHHHHHhcc
Q 000790 589 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY 627 (1283)
Q Consensus 589 ~~Q~eil~~I~~~qvvII~gpTGSGKTtqi~q~Lle~~~ 627 (1283)
.+.+++-.+...+..|+|.|++|+||++.+ .+|.....
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~~s~ 47 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIA-ARLHYLSK 47 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHH-HHHHHhcC
Confidence 344556666677889999999999999865 44555433
No 491
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=89.77 E-value=0.32 Score=54.11 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=38.0
Q ss_pred EEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc-CCceEEEeccCcCHHHHHHH
Q 000790 679 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQKFSDF 748 (1283)
Q Consensus 679 ~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r-~dlklIlmSATld~e~fa~~ 748 (1283)
.-.+.|+..+..+....+.+..+||+||-- .+++......++..+.... ....+|+.|-- .+.+..+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~--~~~~~~~ 209 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPA-AGLNPEETEELAELIRELRERGITVLLVEHD--MDVVMSL 209 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecC--HHHHHHh
Confidence 345566666555555556778999999987 6777654444433333221 34455555554 3334444
No 492
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.70 E-value=1.3 Score=48.67 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=37.6
Q ss_pred EechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHh-cCCceEEEeccCcCHHHHHHH
Q 000790 680 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQKFSDF 748 (1283)
Q Consensus 680 ~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~-r~dlklIlmSATld~e~fa~~ 748 (1283)
-.+.|+..+..+....+.+..++|+||-= .+++......++..+... ..+..+|+.|-- .+.+..+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~--~~~~~~~ 204 (216)
T TIGR00960 138 QLSGGEQQRVAIARAIVHKPPLLLADEPT-GNLDPELSRDIMRLFEEFNRRGTTVLVATHD--INLVETY 204 (216)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHh
Confidence 45566666665555567788999999976 566665443333333322 124455555554 4444443
No 493
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=89.68 E-value=1.1 Score=58.22 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=37.2
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|...+..+....+.+..++|+||+= -.++.+....++..+... .+..+|+.|--+
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~T-s~LD~~te~~i~~~L~~~-~~~T~IiitHr~ 669 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDEST-SNLDTITEKKIVNNLLNL-QDKTIIFVAHRL 669 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHh-cCCEEEEEecch
Confidence 4667777766666678889999999987 566665544444444432 344555555544
No 494
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=89.67 E-value=0.9 Score=57.56 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=36.9
Q ss_pred echhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 681 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 681 ~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
.+.|...|..+....+.+-.++|+||+- -.++......++..+....++..+|+.|--+
T Consensus 452 LSgGq~qRi~lARall~~~~illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tii~itH~~ 510 (569)
T PRK10789 452 LSGGQKQRISIARALLLNAEILILDDAL-SAVDGRTEHQILHNLRQWGEGRTVIISAHRL 510 (569)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 4556666666666667888999999987 5666665555555444444455555555443
No 495
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.66 E-value=0.22 Score=55.55 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=38.5
Q ss_pred EEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhc--CCceEEEeccCc
Q 000790 678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--RDFKLIVTSATL 740 (1283)
Q Consensus 678 I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r--~dlklIlmSATl 740 (1283)
+.-++.|...+..+....+.+-.++|+||.. .+++.+....+...+.... ....+|+.|--+
T Consensus 128 ~~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3456677766666555567788999999998 6777665444433333222 245666666554
No 496
>PHA00729 NTP-binding motif containing protein
Probab=89.63 E-value=0.63 Score=52.03 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=17.3
Q ss_pred CeEEEEccCCCChHHHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQYL 622 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q~L 622 (1283)
.+++|.|++|+|||+.+....
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999875533
No 497
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.62 E-value=0.58 Score=53.57 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.3
Q ss_pred CeEEEEccCCCChHHHHHH
Q 000790 602 QVVVVVGETGSGKTTQLTQ 620 (1283)
Q Consensus 602 qvvII~gpTGSGKTtqi~q 620 (1283)
..+++.||+|-||||.+-.
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 5799999999999998643
No 498
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.55 E-value=1.3 Score=53.61 Aligned_cols=41 Identities=10% Similarity=0.279 Sum_probs=25.7
Q ss_pred CCceEEEcCCCcCCcc---hhHHHHHHHHHHHhcCCceEEEeccCc
Q 000790 698 KYRVIVMDEAHERSLS---TDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 698 ~~s~IIIDEaHERsl~---tD~ll~lLk~il~~r~dlklIlmSATl 740 (1283)
++++++||.++...-. ...++.++..+..... +||++|...
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~ 218 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRP 218 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCC
Confidence 6899999999953333 3355566666554432 666666443
No 499
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=89.51 E-value=1.4 Score=53.31 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=40.0
Q ss_pred CceEEEcCCCcCCcchhHHHHHHHHHHH---hcCCceEEEeccCc-CHHHHHHHhCCC
Q 000790 699 YRVIVMDEAHERSLSTDVLFGILKKVVA---RRRDFKLIVTSATL-NAQKFSDFFGSV 752 (1283)
Q Consensus 699 ~s~IIIDEaHERsl~tD~ll~lLk~il~---~r~dlklIlmSATl-d~e~fa~~f~~~ 752 (1283)
.-+||||-+..+.-..+++...|.+... ...-.+||++|... ....+++.+.+.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~ 206 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNR 206 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCC
Confidence 5699999988777777888877776654 34457899999888 456677776554
No 500
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.50 E-value=1 Score=50.03 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHhCCeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCC---
Q 000790 598 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP--- 674 (1283)
Q Consensus 598 I~~~qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~--- 674 (1283)
+..+..+.|+||.||||||.+ ..|.-......|.|.+ --..+..-....+....+.-.-...-+.....+...-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 101 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLV-NLIPRFYDVDSGRILI--DGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP 101 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHH-HHHhccccCCCCEEEE--CCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCC
Q ss_pred -------------------------------CceEEEechhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHH
Q 000790 675 -------------------------------STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKK 723 (1283)
Q Consensus 675 -------------------------------~t~I~~~T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~ 723 (1283)
+..+.-.+.|...+..+....+.+.+++|+||.= .+++.+....++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~ 180 (234)
T cd03251 102 GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEAT-SALDTESERLVQAA 180 (234)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHH
Q ss_pred HHHhcCCceEEEec
Q 000790 724 VVARRRDFKLIVTS 737 (1283)
Q Consensus 724 il~~r~dlklIlmS 737 (1283)
+........+|+.|
T Consensus 181 l~~~~~~~tii~~s 194 (234)
T cd03251 181 LERLMKNRTTFVIA 194 (234)
T ss_pred HHHhcCCCEEEEEe
Done!