Query 000790
Match_columns 1283
No_of_seqs 616 out of 3420
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 17:52:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000790.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_558-562//hhsearch_pdb/000790hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 974.8 62.1 636 573-1213 81-732 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 520.9 32.7 524 577-1113 21-628 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 502.2 34.2 507 584-1110 23-604 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 490.1 30.6 515 575-1110 12-614 (720)
5 3i4u_A ATP-dependent RNA helic 1.0 1 1 449.9 22.9 249 964-1214 5-254 (270)
6 4f92_B U5 small nuclear ribonu 1.0 1 1 376.4 28.7 454 587-1050 927-1466(1724)
7 3l9o_A ATP-dependent RNA helic 1.0 1 1 364.2 23.2 331 582-930 180-597 (1108)
8 4f92_B U5 small nuclear ribonu 1.0 1 1 361.7 41.5 456 587-1051 80-636 (1724)
9 4a4z_A Antiviral helicase SKI2 1.0 1 1 360.8 17.6 386 584-986 37-557 (997)
10 3o8b_A HCV NS3 protease/helica 1.0 1 1 345.5 14.6 306 576-933 207-517 (666)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=974.78 Aligned_cols=636 Identities=46% Similarity=0.825 Sum_probs=594.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCC--CCEEEEECCHHHHHHHHHHHH
Q ss_conf 423999999705998799999999999099399981489876899999999702269--989999652589999999999
Q 000790 573 AKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRV 650 (1283)
Q Consensus 573 ~~~~~l~~~R~~LPi~~~Q~eiL~~I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~--~~~IivtqPrR~lA~qvakrv 650 (1283)
....+++++|..+|++..+..++.++..+++++|+|||||||||+++++++...+.. +..|+|++|+|++|.+++.++
T Consensus 81 ~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l 160 (773)
T 2xau_A 81 PKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRV 160 (773)
T ss_dssp HHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 89999999866189599999999999679839998899889999999999974001589965886185699999999999
Q ss_pred HHHHCCCCCCEEEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99840213986669884321169970099955068899870399999873299818996786612999999999971499
Q 000790 651 SEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD 730 (1283)
Q Consensus 651 a~e~g~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~l~~d~~L~~is~IIIDEaHERsl~tD~Ll~lLk~il~~r~d 730 (1283)
+.+++..++..+||.++++......+.|+++|+|+|++.++.+..+.++++|||||+|+|++++++++++++.+...+++
T Consensus 161 ~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 161 AEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp HHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99848845325662224454558898779989999999974284435778899547010364558999999999874878
Q ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
Q ss_conf 54999525769989997728999373068633301453479804699999999999861399997999929999999999
Q 000790 731 FKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAAC 810 (1283)
Q Consensus 731 lkiIlmSATld~~~la~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~i~~~l~i~~~~~~G~ILVFl~g~~eie~l~ 810 (1283)
.++|+||||++.+.|++||++++++.++++.+||+++|...+..+++...+..++.++.....|++||||+++.+|+.++
T Consensus 241 ~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~ 320 (773)
T 2xau_A 241 LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAV 320 (773)
T ss_dssp CEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 62999943356899999846898545368655538898068824599999999999997268999899899899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC-----CCCEEEEEECCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 9999999985203468999818998359999999999996705-----99805999467310157889766999848855
Q 000790 811 FALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK-----EGTRKCIVATNIAETSLTVDGIFYVIDTGYGK 885 (1283)
Q Consensus 811 ~~L~e~l~~l~~~~~~~~~~l~Il~lHs~L~~~er~~If~~f~-----~G~rkVIVATnIaEtGItIp~I~~VIDsG~~K 885 (1283)
..|.+.+..+... ....++.+.++||+|+.++|..+++.|+ .|.++||||||++|+|||||+|.+|||+|++|
T Consensus 321 ~~L~~~~~~l~~~--~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k 398 (773)
T 2xau_A 321 RKISLEGDQLVRE--EGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSK 398 (773)
T ss_dssp HHHHHHHHHHHHH--HCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEE
T ss_pred HHHHHHHHHHCCC--CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCC
T ss_conf 9999988763134--56797599980789999999999852643457888349999676798476768737999479722
Q ss_pred CEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf 11106878964333121599879998262599999789990284566210599996112315625799997512667666
Q 000790 886 MKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLL 965 (1283)
Q Consensus 886 ~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyte~~~~~~l~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~ 965 (1283)
.++||+..|++.|.+.|+|.++|.||+|||||.++|.||+||++.++...|..+..|||++++|.+++|+++++|+.++.
T Consensus 399 ~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~ 478 (773)
T 2xau_A 399 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLV 478 (773)
T ss_dssp EEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGG
T ss_pred CEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH
T ss_conf 12225666832033001799999865344478999879999637884012301689753347589999999984999723
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77789999844599899999882443468977799999972999968899987431038669999999981699744587
Q 000790 966 DFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRP 1045 (1283)
Q Consensus 966 ~f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lGr~ma~lPldp~lak~Ll~~~~~~c~~e~ltIva~Ls~~~~f~~p 1045 (1283)
.|+|++||+.+.+..|+..|..+||||.+|.||++|+.|+.||++|.+|+||+.++.++|++++++|+|||+++++|++|
T Consensus 479 ~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~ 558 (773)
T 2xau_A 479 HFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRP 558 (773)
T ss_dssp GCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 24355798599999999999976876557886830564243368889999998621247416899999960368855187
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC---CC-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 10599999999741136860889999999999610---01-013676204738999999999999999986399988999
Q 000790 1046 KDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQ---YR-GDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSG 1121 (1283)
Q Consensus 1046 ~~~~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~---~~-~~wC~~~~L~~~~L~~a~~ir~QL~~~l~~~~~~~~s~~ 1121 (1283)
.+.+++++.++..|..+.|||+++||+|++|..+. .. ..||.+|||++++|+.+.+++.||..+|..++++..++.
T Consensus 559 ~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~ 638 (773)
T 2xau_A 559 TKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTD 638 (773)
T ss_dssp TTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 47899999999850688985999999999998702221068999998388999999999999999999874288757777
Q ss_pred ----CCHHHHHHHHHHCCCCHHHHHCCCCE-EEEECCCCCEEECCCCCCCCCCCCCCCEEEEHHHCCHHHHHHHCCCCCH
Q ss_conf ----87689999997204621444026411-4662299412308999544799998702530211131566442244598
Q 000790 1122 ----HDFDVVRKAICSAYFHNAARLKGVGE-YINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEP 1196 (1283)
Q Consensus 1122 ----~~~~~i~k~l~agf~~nvAr~~~~g~-y~~~~~~~~v~lHPsS~L~~~~~~p~~vvy~elv~Tsk~y~r~vt~I~~ 1196 (1283)
.+++.|++|||+|||+|+|++.+.|. |.++.++..|+|||+|+|+. .|+||||+|++.|++.||++||+|+|
T Consensus 639 ~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~---~~~~~v~~e~~~t~~~~~~~~~~i~~ 715 (773)
T 2xau_A 639 YESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGH---DAEWVIYNEFVLTSKNYIRTVTSVRP 715 (773)
T ss_dssp TTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCT---TCSEEEEEEEEESSSEEEEEEEECCH
T ss_pred CCCHHHHHHHHHHHHHHCHHHHEEECCCCCCCEEEECCCEEEECCCCCCCC---CCCEEEEEEEECCCHHHEEECCCCCH
T ss_conf 773206999999999867375514346787415733797799889864679---98989999862024424244160799
Q ss_pred HHHHHHCCCCCCCCCCC
Q ss_conf 88984179650113674
Q 000790 1197 QWLSELGPMFFSVKDSD 1213 (1283)
Q Consensus 1197 ~wL~e~~p~~~~~~~~~ 1213 (1283)
+||.+++|+||...+..
T Consensus 716 ~~l~~~~~~~~~~~~~~ 732 (773)
T 2xau_A 716 EWLIEIAPAYYDLSNFQ 732 (773)
T ss_dssp HHHHHHCTTTSCGGGCC
T ss_pred HHHHHHHHHHEEECCCC
T ss_conf 99999878762204178
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=520.93 Aligned_cols=524 Identities=17% Similarity=0.165 Sum_probs=385.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHH-HHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH--H
Q ss_conf 999997059987999999999-9909939998148987689999999970226998999965258999999999999--8
Q 000790 577 TLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE--E 653 (1283)
Q Consensus 577 ~l~~~R~~LPi~~~Q~eiL~~-I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~--e 653 (1283)
..+.....-..+++|.++++. +.++++++|+||||||||+++++++++.....+++++|++|++++|.|++.++.. .
T Consensus 21 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~ 100 (715)
T 2va8_A 21 EIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL 100 (715)
T ss_dssp HHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99986799879999999999986489948998489875999999999999997798499990859999999999987652
Q ss_pred HCCCCCCEEEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 402139866698843211699700999550688998703999-9987329981899678661299999999997149954
Q 000790 654 MDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 732 (1283)
Q Consensus 654 ~g~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~l~~d~~-L~~is~IIIDEaHERsl~tD~Ll~lLk~il~~r~dlk 732 (1283)
++..++..+|+..+.+... ..+.|+|||+|.|++.+..++. +.++++|||||||+.+ +. .....+..++...++++
T Consensus 101 ~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~-~~~~~l~~i~~~~~~~~ 177 (715)
T 2va8_A 101 IGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DP-ERGPVVESVTIRAKRRN 177 (715)
T ss_dssp GTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CT-TTHHHHHHHHHHHHTSE
T ss_pred CCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCC-CC-CCCHHHHHHHHHCCCCC
T ss_conf 7988999848977762013-799999985899999996785576436989995355527-86-62229999998653672
Q ss_pred EEEECCCC-CHHHHHHHHCCCCEEEECCCCCCEEEEECCCC--------------HHHH--HHHHHHHHHHHHHCCCCCC
Q ss_conf 99952576-99899977289993730686333014534798--------------0469--9999999999861399997
Q 000790 733 LIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP--------------CEDY--VEAAVKQAMTIHITSPPGD 795 (1283)
Q Consensus 733 iIlmSATl-d~~~la~~f~~~pvi~i~gr~~pV~i~y~~~~--------------~~dy--v~~~i~~~l~i~~~~~~G~ 795 (1283)
+|+||||+ |.+.|++||+ ++++...++.+|+...+.... ...+ ....+..+...+ ..+++
T Consensus 178 ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 254 (715)
T 2va8_A 178 LLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQ 254 (715)
T ss_dssp EEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCC
T ss_pred EEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHCCCCHHHHHHHHHHH--HCCCC
T ss_conf 8997178799999999849-97457999988746888835876654046527604432134438999999998--66997
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-------------HHCCC----------CCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999929999999999999999998-------------52034----------6899981899835999999999999670
Q 000790 796 ILIFMTGQDEIEAACFALKERMEQ-------------LISST----------TREVPELLILPIYSQLPADLQAKIFEKA 852 (1283)
Q Consensus 796 ILVFl~g~~eie~l~~~L~e~l~~-------------l~~~~----------~~~~~~l~Il~lHs~L~~~er~~If~~f 852 (1283)
+||||+++++++.++..|.+.+.. ..... ........+.++||+|+.++|..+++.|
T Consensus 255 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f 334 (715)
T 2va8_A 255 VLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGF 334 (715)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_conf 79997988999999999999876542886778999999998663455322999999966878878999999999999999
Q ss_pred CCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCH
Q ss_conf 5998059994673101578897669998488551110687896433312159987999826259999---9789990284
Q 000790 853 KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTE 929 (1283)
Q Consensus 853 ~~G~rkVIVATnIaEtGItIp~I~~VIDsG~~K~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyte 929 (1283)
+.|.++|||||+++++|||+|++.+||++ ...||++.+.. ..|+|.++|.||+|||||.| +|.||+||++
T Consensus 335 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 335 RQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HCCCCEEEEECHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 86998599978087661688854999918----75644667778---775999999998424279988887569999678
Q ss_pred HH-HHHH--CCCCCCCHHHCCCHHH------HHHHHHHCCCC----CCCCC---CCCC-CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 56-6210--5999961123156257------99997512667----66677---7899-998445998999998824434
Q 000790 930 SA-YLNE--MLPSPVPEIQRTNLGN------VVLLLKSLKID----NLLDF---DFMD-PPPQENILNSMYQLWVLGALN 992 (1283)
Q Consensus 930 ~~-~~~~--l~~~~~PEI~r~~L~~------vvL~Lk~lgi~----~l~~f---~fld-pP~~~~i~~al~~L~~lgaLd 992 (1283)
.+ +... ......||+.+++|.+ .+|.++++|.. ++..| .|+. +|+...+..++..|..+|+|+
T Consensus 408 ~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~ 487 (715)
T 2va8_A 408 KEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIK 487 (715)
T ss_dssp GGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEE
T ss_conf 06799999999708998735337866679999999985156688999999998507876426388999999998884976
Q ss_pred CCC---CCCHHHHHHHHCCCCHHHHHHHHHHHHC---CCHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHH---HHCC-
Q ss_conf 689---7779999997299996889998743103---86699999999816-99744587105999999997---4113-
Q 000790 993 NVG---ALTDLGWKMVEFPLDPPLAKMLLMGEQL---GCLDEVLTIVSMLS-VPSVFFRPKDRAEESDAARE---KFFV- 1061 (1283)
Q Consensus 993 ~~g---~LT~lGr~ma~lPldp~lak~Ll~~~~~---~c~~e~ltIva~Ls-~~~~f~~p~~~~~~~~~~r~---~f~~- 1061 (1283)
.++ .+|++|+.|+.||++|.+++|++.+... .|..+++.|+|+.+ ++++|++|.+..+..+.... .+..
T Consensus 488 ~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~ 567 (715)
T 2va8_A 488 EEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIE 567 (715)
T ss_dssp ECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSC
T ss_pred ECCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCC
T ss_conf 66986866768999999748986799999986542578789999995268433457648678999999998521111136
Q ss_pred -C-CC-------CHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -6-86-------0889999999999610010136762047389999999999999999863
Q 000790 1062 -Q-ES-------DHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTL 1113 (1283)
Q Consensus 1062 -~-~s-------Dhltll~vf~~w~~~~~~~~wC~~~~L~~~~L~~a~~ir~QL~~~l~~~ 1113 (1283)
+ .. .|+-..-+.+.|.+...-..+|.++.+....|..+.+....|...+..+
T Consensus 568 ~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i 628 (715)
T 2va8_A 568 EPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHL 628 (715)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6654310234577799999999998499878999997898244999999999999999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=502.19 Aligned_cols=507 Identities=16% Similarity=0.160 Sum_probs=377.7
Q ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH--HHCCCCCCE
Q ss_conf 599879999999999909939998148987689999999970226998999965258999999999999--840213986
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE--EMDTELGDK 661 (1283)
Q Consensus 584 ~LPi~~~Q~eiL~~I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~--e~g~~lG~~ 661 (1283)
.-..+++|.++++.+.+++++++++|||||||+++++++++... .+++++|++|++++|.|+++++.. .++..++..
T Consensus 23 ~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~ 101 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS 101 (702)
T ss_dssp --CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 98899999999999838996899868961799999999999998-68959999370999999999999777049889998
Q ss_pred EEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCC-CCCCCEEEECCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6698843211699700999550688998703999-99873299818996-----78661299999999997149954999
Q 000790 662 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHE-----RSLSTDVLFGILKKVVARRRDFKLIV 735 (1283)
Q Consensus 662 VGy~ir~e~~~s~~t~I~~~T~G~LLr~l~~d~~-L~~is~IIIDEaHE-----Rsl~tD~Ll~lLk~il~~r~dlkiIl 735 (1283)
+|+....+... ..+.|+|+|+|.|...+..+.. +.++++|||||||+ |+...+.++..++ ..++++++|+
T Consensus 102 ~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~ii~ 177 (702)
T 2p6r_A 102 TGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRVIG 177 (702)
T ss_dssp CSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEEEE
T ss_pred ECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHH---HCCCCCEEEE
T ss_conf 38877664352-6999999898999999975755776259898850255478776527999999998---4386765999
Q ss_pred ECCCC-CHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHH---------HHHHHHHHHHCCCCCCEEEECCCHHH
Q ss_conf 52576-998999772899937306863330145347980469999---------99999998613999979999299999
Q 000790 736 TSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEA---------AVKQAMTIHITSPPGDILIFMTGQDE 805 (1283)
Q Consensus 736 mSATl-d~~~la~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyv~~---------~i~~~l~i~~~~~~G~ILVFl~g~~e 805 (1283)
||||+ |.+.|++|++ ++++..+++.+|+...+...+...+... ....+.... ..++++||||+++++
T Consensus 178 lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~ 254 (702)
T 2p6r_A 178 LSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRG 254 (702)
T ss_dssp EECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHH
T ss_pred ECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHH--HCCCCEEEECCCHHH
T ss_conf 7887689999999848-9723688877664688861782310576301444546999999999--669978998388789
Q ss_pred HHHHHHHHHHHHHHHHCCCC------CC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 99999999999998520346------89-----------99818998359999999999996705998059994673101
Q 000790 806 IEAACFALKERMEQLISSTT------RE-----------VPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAET 868 (1283)
Q Consensus 806 ie~l~~~L~e~l~~l~~~~~------~~-----------~~~l~Il~lHs~L~~~er~~If~~f~~G~rkVIVATnIaEt 868 (1283)
++.++..|.+.+........ .. .....+.++||+|+.++|..+++.|+.|.++|||||+++++
T Consensus 255 ~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~ 334 (702)
T 2p6r_A 255 AEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAA 334 (702)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTS
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHC
T ss_conf 99999999999876469588999998624553219999998469288669999999999999998799849997838866
Q ss_pred CCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHHHHHHC--CCCCCCH
Q ss_conf 578897669998488551110687896433312159987999826259999---97899902845662105--9999611
Q 000790 869 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESAYLNEM--LPSPVPE 943 (1283)
Q Consensus 869 GItIp~I~~VIDsG~~K~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyte~~~~~~l--~~~~~PE 943 (1283)
|||+|++.+||++ ...|| |. ..|+|.++|.||+|||||.| +|.||+|+++.++...+ .....||
T Consensus 335 Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e 403 (702)
T 2p6r_A 335 GVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 403 (702)
T ss_dssp SSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCC
T ss_pred CCCCCCEEEEECC----CEEEC---CC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCC
T ss_conf 5788733999847----62307---87----7758999999984332799999873699995573189999999608998
Q ss_pred HHCCCHHH------HHHHHHHCCCC----CCCCC---CCC----CCCCHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHH
Q ss_conf 23156257------99997512667----66677---789----999844599899999882443468--9777999999
Q 000790 944 IQRTNLGN------VVLLLKSLKID----NLLDF---DFM----DPPPQENILNSMYQLWVLGALNNV--GALTDLGWKM 1004 (1283)
Q Consensus 944 I~r~~L~~------vvL~Lk~lgi~----~l~~f---~fl----dpP~~~~i~~al~~L~~lgaLd~~--g~LT~lGr~m 1004 (1283)
+.+++|.+ .+|.+.++|.. ++..| .|+ ++|+.+.+..++..|..+|+|+.+ +.+|++|+.|
T Consensus 404 ~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~ 483 (702)
T 2p6r_A 404 RITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLV 483 (702)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHH
T ss_pred CCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCCHHHHHH
T ss_conf 84651686055899999999717788899999999850677750178999999999999988594289906648699999
Q ss_pred HHCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHH-H--HHH-CCC--CC-------CHHH
Q ss_conf 7299996889998743103--866999999998169-97445871059999999-9--741-136--86-------0889
Q 000790 1005 VEFPLDPPLAKMLLMGEQL--GCLDEVLTIVSMLSV-PSVFFRPKDRAEESDAA-R--EKF-FVQ--ES-------DHLT 1068 (1283)
Q Consensus 1005 a~lPldp~lak~Ll~~~~~--~c~~e~ltIva~Ls~-~~~f~~p~~~~~~~~~~-r--~~f-~~~--~s-------Dhlt 1068 (1283)
+.+|++|.++++++.+... .|..+++.|+|+.+. +++++++.+ .+..+.. + ..+ ..+ .. .++-
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 562 (702)
T 2p6r_A 484 SRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVK 562 (702)
T ss_dssp HHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9985789899999997430468789999995377444457778765-999999986546666786300001234566699
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999610010136762047389999999999999999
Q 000790 1069 LLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDIL 1110 (1283)
Q Consensus 1069 ll~vf~~w~~~~~~~~wC~~~~L~~~~L~~a~~ir~QL~~~l 1110 (1283)
..-+.+.|.+...-..+|.++.+....++.+.+....|...+
T Consensus 563 ~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~ 604 (702)
T 2p6r_A 563 TALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604 (702)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998279868899885776775999999999999999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=490.08 Aligned_cols=515 Identities=17% Similarity=0.170 Sum_probs=365.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH-HHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 39999997059987999999999-99099399981489876899999999702269989999652589999999999998
Q 000790 575 SKTLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEE 653 (1283)
Q Consensus 575 ~~~l~~~R~~LPi~~~Q~eiL~~-I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~e 653 (1283)
....+..+.....+++|.++++. +.+++++++++|||||||+++++++++.....+++++|++|++++|.|+++++. .
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~-~ 90 (720)
T 2zj8_A 12 IKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ-D 90 (720)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG-G
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-H
T ss_conf 999998779988999999999998557994899869963799999999999998679989998596999999999999-8
Q ss_pred HCCCCCCEEEEEEE---EEECCCCCCEEEEECHHHHHHHHCCCCC-CCCCCEEEECCCC-----CCCCCHHHHHHHHHHH
Q ss_conf 40213986669884---3211699700999550688998703999-9987329981899-----6786612999999999
Q 000790 654 MDTELGDKVGYAIR---FEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAH-----ERSLSTDVLFGILKKV 724 (1283)
Q Consensus 654 ~g~~lG~~VGy~ir---~e~~~s~~t~I~~~T~G~LLr~l~~d~~-L~~is~IIIDEaH-----ERsl~tD~Ll~lLk~i 724 (1283)
+. ..|..|+..+. ........+.|+|+|++.|...+..+.. +.++++||||||| +|+...+.++..++
T Consensus 91 l~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-- 167 (720)
T 2zj8_A 91 WE-KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML-- 167 (720)
T ss_dssp GG-GGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB--
T ss_pred HH-HCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH--
T ss_conf 87-359779996389776412147999999888999999975714665279899989855678764479999999864--
Q ss_pred HHHCCCCEEEEECCCC-CHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHH-------HHHHHHHHHHHHHCCCCCCE
Q ss_conf 9714995499952576-998999772899937306863330145347980469-------99999999998613999979
Q 000790 725 VARRRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDY-------VEAAVKQAMTIHITSPPGDI 796 (1283)
Q Consensus 725 l~~r~dlkiIlmSATl-d~~~la~~f~~~pvi~i~gr~~pV~i~y~~~~~~dy-------v~~~i~~~l~i~~~~~~G~I 796 (1283)
.++++|+||||+ |.+.+++||+ ++.+...++.+|+...+...+...+ ....+..+...+ ..++++
T Consensus 168 ----~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 240 (720)
T 2zj8_A 168 ----GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGA 240 (720)
T ss_dssp ----TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCE
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHH--HCCCCE
T ss_conf ----07769997588689999999829-86037898887636889757813116532000169999999998--679988
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCC--------------------CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 9992999999999999999999852034--------------------68999818998359999999999996705998
Q 000790 797 LIFMTGQDEIEAACFALKERMEQLISST--------------------TREVPELLILPIYSQLPADLQAKIFEKAKEGT 856 (1283)
Q Consensus 797 LVFl~g~~eie~l~~~L~e~l~~l~~~~--------------------~~~~~~l~Il~lHs~L~~~er~~If~~f~~G~ 856 (1283)
||||+++++++.++..|.+.+....... ........+.++||+|+.++|..+++.|+.|.
T Consensus 241 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 320 (720)
T 2zj8_A 241 LIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGI 320 (720)
T ss_dssp EEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99965879999999999999987459066899999999875166508899998519463248999999999999997799
Q ss_pred EEEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHHHH
Q ss_conf 059994673101578897669998488551110687896433312159987999826259999---97899902845662
Q 000790 857 RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESAYL 933 (1283)
Q Consensus 857 rkVIVATnIaEtGItIp~I~~VIDsG~~K~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyte~~~~ 933 (1283)
++|||||+++++|||+|++.+||+.+ ..|| ..|+ .|.|.++|.||+|||||.| +|.||.|+++..+.
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred CEEEEECCHHHCCCCCCCEEEEECCC----EEEC-CCCC-----CCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHH
T ss_conf 75999881866628888528998487----2406-8887-----608999999987544899888876699996671099
Q ss_pred ---HHCCCCCCCHHHCC-----CHHHHHHHHHHCCCC-------CCCCCCCC------CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf ---10599996112315-----625799997512667-------66677789------9998445998999998824434
Q 000790 934 ---NEMLPSPVPEIQRT-----NLGNVVLLLKSLKID-------NLLDFDFM------DPPPQENILNSMYQLWVLGALN 992 (1283)
Q Consensus 934 ---~~l~~~~~PEI~r~-----~L~~vvL~Lk~lgi~-------~l~~f~fl------dpP~~~~i~~al~~L~~lgaLd 992 (1283)
..+.....+++... .|...++.+.+.+.. +++.+.|+ +++..+.+..++..|..+|+|+
T Consensus 391 ~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~ 470 (720)
T 2zj8_A 391 EVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIE 470 (720)
T ss_dssp HHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999961899871765686043999999999717788999999999827687743645789999999999999887935
Q ss_pred -CCC---CCCHHHHHHHHCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHH---HHC
Q ss_conf -689---7779999997299996889998743103----866999999998169-9744587105999999997---411
Q 000790 993 -NVG---ALTDLGWKMVEFPLDPPLAKMLLMGEQL----GCLDEVLTIVSMLSV-PSVFFRPKDRAEESDAARE---KFF 1060 (1283)
Q Consensus 993 -~~g---~LT~lGr~ma~lPldp~lak~Ll~~~~~----~c~~e~ltIva~Ls~-~~~f~~p~~~~~~~~~~r~---~f~ 1060 (1283)
.++ .+|++|+.|+.+|++|.++++++.+... .|..++|.|+|+++. +++|+++.+..+..+.... .+.
T Consensus 471 ~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~ 550 (720)
T 2zj8_A 471 ISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLY 550 (720)
T ss_dssp ECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCS
T ss_pred ECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 77898275576999999973899999999999876425898889999750585321266377789999999985632012
Q ss_pred ----CCCC----------CHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----3686----------0889999999999610010136762047389999999999999999
Q 000790 1061 ----VQES----------DHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDIL 1110 (1283)
Q Consensus 1061 ----~~~s----------Dhltll~vf~~w~~~~~~~~wC~~~~L~~~~L~~a~~ir~QL~~~l 1110 (1283)
...+ .++-..-+.+.|.+...-...|.++.+....|..+.+-...|...+
T Consensus 551 ~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~ 614 (720)
T 2zj8_A 551 FDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSL 614 (720)
T ss_dssp SCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3655334442013556777799999999998179878888883887676999999999999999
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=449.89 Aligned_cols=249 Identities=46% Similarity=0.830 Sum_probs=239.0
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 667778-9999844599899999882443468977799999972999968899987431038669999999981699744
Q 000790 964 LLDFDF-MDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVF 1042 (1283)
Q Consensus 964 l~~f~f-ldpP~~~~i~~al~~L~~lgaLd~~g~LT~lGr~ma~lPldp~lak~Ll~~~~~~c~~e~ltIva~Ls~~~~f 1042 (1283)
...|+| +|||+.+++..|++.|+.|||||++|.||++|+.|+.||++|++||||+.+..++|++++++|+|||+++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 10266689994999999999999986894799982689999971899879999999821238899999999997798634
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 58710599999999741136860889999999999610010136762047389999999999999999863999889998
Q 000790 1043 FRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGH 1122 (1283)
Q Consensus 1043 ~~p~~~~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~~~~~wC~~~~L~~~~L~~a~~ir~QL~~~l~~~~~~~~s~~~ 1122 (1283)
++|.+++++++.+|.+|..++|||+++||+|++|+.++.+..||++|||++++|+++.+++.||..+|.+.++++.+++.
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~ 164 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGK 164 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 59723699999999873588876999999999999737536689884489999999999999999989873998677721
Q ss_pred CHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCEEEEHHHCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 76899999972046214440264114662299412308999544799998702530211131566442244598889841
Q 000790 1123 DFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSEL 1202 (1283)
Q Consensus 1123 ~~~~i~k~l~agf~~nvAr~~~~g~y~~~~~~~~v~lHPsS~L~~~~~~p~~vvy~elv~Tsk~y~r~vt~I~~~wL~e~ 1202 (1283)
+++.|++|||+|||+|+|++++.+.|.++.+++.|+|||+|+||+ ..|+||||+|++.|+|.|||+||+|+|+||.++
T Consensus 165 ~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~--~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ 242 (270)
T 3i4u_A 165 STVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN--RQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 242 (270)
T ss_dssp CTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT--SCCSEEEEEEEEESSSEEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCEEEECCHHHHCC--CCCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 689999999998488782237888668715897799885045308--999879998556414768774001689999998
Q ss_pred CCCCCCCCCCCH
Q ss_conf 796501136741
Q 000790 1203 GPMFFSVKDSDT 1214 (1283)
Q Consensus 1203 ~p~~~~~~~~~~ 1214 (1283)
+|+||..++...
T Consensus 243 ap~~~~~~~~~~ 254 (270)
T 3i4u_A 243 APAFFKVLEVDL 254 (270)
T ss_dssp CTTTEECC----
T ss_pred HHHHHCCCCCCC
T ss_conf 488734002466
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=376.43 Aligned_cols=454 Identities=16% Similarity=0.158 Sum_probs=310.3
Q ss_pred CHHHHHHHHHHHH-HCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8799999999999-099399981489876899999999702269-98999965258999999999999840213986669
Q 000790 587 IFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 664 (1283)
Q Consensus 587 i~~~Q~eiL~~I~-~~qvvII~apTGSGKTtqi~q~Lle~~~~~-~~~IivtqPrR~lA~qvakrva~e~g~~lG~~VGy 664 (1283)
..++|.++++.+. .+++++|++|||||||+++.++++...... +++++|++|+++||.|++..+.+.++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEE
T ss_conf 99799999999966899689993798874699999999999858998799986829999999999999844220978999
Q ss_pred EEEEEEC---CCCCCEEEEECHHHHHHHHC---CCCCCCCCCEEEECCCCC----CCCCHHHHHHHHHHHHH-HCCCCEE
Q ss_conf 8843211---69970099955068899870---399999873299818996----78661299999999997-1499549
Q 000790 665 AIRFEDV---TGPSTLIKYMTDGVLLRETL---KDSDLDKYRVIVMDEAHE----RSLSTDVLFGILKKVVA-RRRDFKL 733 (1283)
Q Consensus 665 ~ir~e~~---~s~~t~I~~~T~G~LLr~l~---~d~~L~~is~IIIDEaHE----Rsl~tD~Ll~lLk~il~-~r~dlki 733 (1283)
..+.... ....+.|++|||+.+...+. ....+.++++||+||+|. |+...+.++..++.+.. ..+++|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97997812111589999998879999998384446413523189701011047878763999999999998636888639
Q ss_pred EEECCCC-CHHHHHHHHCCCC--EEEE--CCCCCCEEEEECCCCHHHH---HHHHHHHH-HHHHHCCCCCCEEEECCCHH
Q ss_conf 9952576-9989997728999--3730--6863330145347980469---99999999-99861399997999929999
Q 000790 734 IVTSATL-NAQKFSDFFGSVP--IFHI--PGRTFPVNTLYSKTPCEDY---VEAAVKQA-MTIHITSPPGDILIFMTGQD 804 (1283)
Q Consensus 734 IlmSATl-d~~~la~~f~~~p--vi~i--~gr~~pV~i~y~~~~~~dy---v~~~i~~~-l~i~~~~~~G~ILVFl~g~~ 804 (1283)
|+||||+ |++.|++|++..+ ++.+ ..|..|++.+........+ .....+.+ ..+....+.+++||||+++.
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred EEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 99928889999999986799877589488888887089998036777166665320149999998537997215578889
Q ss_pred HHHHHHHHHHHHHHHHHCCC---------------------CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99999999999999852034---------------------689998189983599999999999967059980599946
Q 000790 805 EIEAACFALKERMEQLISST---------------------TREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVAT 863 (1283)
Q Consensus 805 eie~l~~~L~e~l~~l~~~~---------------------~~~~~~l~Il~lHs~L~~~er~~If~~f~~G~rkVIVAT 863 (1283)
.++.++..|...+....... ........|.++|++|+..+|..|++.|..|..+|||||
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT 1246 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVAS 1246 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999998876264302220133999999986414288999874788997799999999999999977998499988
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHH--HHHHHCCC
Q ss_conf 73101578897669998488551110687896433312159987999826259999---97899902845--66210599
Q 000790 864 NIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES--AYLNEMLP 938 (1283)
Q Consensus 864 nIaEtGItIp~I~~VIDsG~~K~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyte~--~~~~~l~~ 938 (1283)
+++++|||+|++.+||.. ...||.+... ..|.+..+|.||+|||||.| .|.|+.++... .+...+..
T Consensus 1247 ~tlA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1247 RSLCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp GGGSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred HHHHCCCCCCCCEEEEEC----CCCCCCCCCC----CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHC
T ss_conf 699757898861899956----7113675556----67799999997615135788788628999965457789999737
Q ss_pred CCCCHHHCCCH----HHHHHHHHHCCCC-C------CCCCCC-------------CCC--------CCHHHHHHHHHHHH
Q ss_conf 99611231562----5799997512667-6------667778-------------999--------98445998999998
Q 000790 939 SPVPEIQRTNL----GNVVLLLKSLKID-N------LLDFDF-------------MDP--------PPQENILNSMYQLW 986 (1283)
Q Consensus 939 ~~~PEI~r~~L----~~vvL~Lk~lgi~-~------l~~f~f-------------ldp--------P~~~~i~~al~~L~ 986 (1283)
.. +...+.| ...++...+.|.- + .+...| +.. ...+.+..++..|.
T Consensus 1319 ~~--~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~ 1396 (1724)
T 4f92_B 1319 EP--LPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLE 1396 (1724)
T ss_dssp SC--BCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--CCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99--7035454411178999999854348899999999730799987307320256653355678999999999999999
Q ss_pred HHCCCCC--CC--CCCHHHHHHHHCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHC-CCCCCCCCHHHHH
Q ss_conf 8244346--89--777999999729999688999874310386-699999999816-9974458710599
Q 000790 987 VLGALNN--VG--ALTDLGWKMVEFPLDPPLAKMLLMGEQLGC-LDEVLTIVSMLS-VPSVFFRPKDRAE 1050 (1283)
Q Consensus 987 ~lgaLd~--~g--~LT~lGr~ma~lPldp~lak~Ll~~~~~~c-~~e~ltIva~Ls-~~~~f~~p~~~~~ 1050 (1283)
..|+|.. ++ ..|++|++|+.++++|..+++++.+....+ +..+|.|++... ..++.++..+...
T Consensus 1397 ~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~ 1466 (1724)
T 4f92_B 1397 QSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNL 1466 (1724)
T ss_dssp HTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHH
T ss_pred HCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 8889998699878666899999997789999999998544369888899884078454566436068999
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=364.21 Aligned_cols=331 Identities=18% Similarity=0.183 Sum_probs=250.4
Q ss_pred HHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 70599879999999999909939998148987689999999970226998999965258999999999999840213986
Q 000790 582 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 661 (1283)
Q Consensus 582 R~~LPi~~~Q~eiL~~I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~e~g~~lG~~ 661 (1283)
...++.+++|.++++.+..++++||+||||||||+++.++++... ..+++++|++|+++|+.|++.++...++ .
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~ 253 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-----D 253 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-----S
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHHC-----C
T ss_conf 479999999999999997699889988999971999999999997-5597499990849999999999999828-----9
Q ss_pred EEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6698843211699700999550688998703999-998732998189967866129999999999714995499952576
Q 000790 662 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 740 (1283)
Q Consensus 662 VGy~ir~e~~~s~~t~I~~~T~G~LLr~l~~d~~-L~~is~IIIDEaHERsl~tD~Ll~lLk~il~~r~dlkiIlmSATl 740 (1283)
||+ +.+.....+.+.|+|||+|+|++.+..... +.++++||||||| +..+..+...+...+....+++++|+||||+
T Consensus 254 Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 254 VGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp EEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred CCE-EECCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHH-HCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 218-96765268999989967699999997475432237899870021-2023006899999998647776499972888
Q ss_pred -CHHHHHHHHCC-----CCEEEECCCCCCEEEEECCCCH---------------HHHH----------------------
Q ss_conf -99899977289-----9937306863330145347980---------------4699----------------------
Q 000790 741 -NAQKFSDFFGS-----VPIFHIPGRTFPVNTLYSKTPC---------------EDYV---------------------- 777 (1283)
Q Consensus 741 -d~~~la~~f~~-----~pvi~i~gr~~pV~i~y~~~~~---------------~dyv---------------------- 777 (1283)
+...|+.|++. +.++....+..|+..++..... ..+.
T Consensus 332 pn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 411 (1108)
T 3l9o_A 332 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGK 411 (1108)
T ss_dssp SSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98799999998515898279834787554068986247764256414422011566899999987541133211234332
Q ss_pred --------------HHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHH----------HHCCC-------CC
Q ss_conf --------------999999999861399997999929999999999999999998----------52034-------68
Q 000790 778 --------------EAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ----------LISST-------TR 826 (1283)
Q Consensus 778 --------------~~~i~~~l~i~~~~~~G~ILVFl~g~~eie~l~~~L~e~l~~----------l~~~~-------~~ 826 (1283)
...+..++..+.....+++||||+++..|+.++..|....-. .+... ..
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 491 (1108)
T 3l9o_A 412 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 491 (1108)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 22234455544320568999999999628998899958487899999999864699777899999999988750464433
Q ss_pred C---------CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCC
Q ss_conf 9---------9981899835999999999999670599805999467310157889766999848855111068789643
Q 000790 827 E---------VPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDA 897 (1283)
Q Consensus 827 ~---------~~~l~Il~lHs~L~~~er~~If~~f~~G~rkVIVATnIaEtGItIp~I~~VIDsG~~K~~~yd~~~g~~~ 897 (1283)
. .....|.++||+|++.+|..++..|..|.++|||||+++++|||||++.+||+... .||+.
T Consensus 492 ~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~----- 562 (1108)
T 3l9o_A 492 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ----- 562 (1108)
T ss_dssp CCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS-----
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECCC----CCCCC-----
T ss_conf 005688787765157565258998999999999986799849998727765778787459996576----66864-----
Q ss_pred CCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHH
Q ss_conf 3312159987999826259999---97899902845
Q 000790 898 LQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 930 (1283)
Q Consensus 898 L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyte~ 930 (1283)
...|+|.++|.||+|||||.| .|.||.++++.
T Consensus 563 -~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 563 -QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp -CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred -CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC
T ss_conf -45638999999763634778999855999995588
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=361.66 Aligned_cols=456 Identities=16% Similarity=0.174 Sum_probs=304.7
Q ss_pred CHHHHHHHHHHHH-HCCEEEEECCCCCCHHHHHHHHHHHHCCC----------CCCEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 8799999999999-09939998148987689999999970226----------998999965258999999999999840
Q 000790 587 IFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYT----------TNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 587 i~~~Q~eiL~~I~-~~qvvII~apTGSGKTtqi~q~Lle~~~~----------~~~~IivtqPrR~lA~qvakrva~e~g 655 (1283)
..++|.++++.+. .+++++|++|||||||+++.++++..... .+.+++++.|+++||.+++..+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999975899399996881469999999999999862343444457998899989979999999999997775
Q ss_pred CCCCCEEEEEEEEEECC---CCCCEEEEECHHHHHHHHCCC---CCCCCCCEEEECCCC----CCCCCHHHHHHHHHH-H
Q ss_conf 21398666988432116---997009995506889987039---999987329981899----678661299999999-9
Q 000790 656 TELGDKVGYAIRFEDVT---GPSTLIKYMTDGVLLRETLKD---SDLDKYRVIVMDEAH----ERSLSTDVLFGILKK-V 724 (1283)
Q Consensus 656 ~~lG~~VGy~ir~e~~~---s~~t~I~~~T~G~LLr~l~~d---~~L~~is~IIIDEaH----ERsl~tD~Ll~lLk~-i 724 (1283)
.+|..|+...+..... ...+.|++|||+.+-..+... ..+.++++|||||+| +|+...+.++..+.. +
T Consensus 160 -~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 -TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp -TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred -HCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHH
T ss_conf -4798899997998887143589999998879999997588530445475889995554429956799999999999999
Q ss_pred HHHCCCCEEEEECCCC-CHHHHHHHHCCCC---EEEEC--CCCCCEEEEECCCCHHHHH--HHHHHHHH-H-HHHCCCCC
Q ss_conf 9714995499952576-9989997728999---37306--8633301453479804699--99999999-9-86139999
Q 000790 725 VARRRDFKLIVTSATL-NAQKFSDFFGSVP---IFHIP--GRTFPVNTLYSKTPCEDYV--EAAVKQAM-T-IHITSPPG 794 (1283)
Q Consensus 725 l~~r~dlkiIlmSATl-d~~~la~~f~~~p---vi~i~--gr~~pV~i~y~~~~~~dyv--~~~i~~~l-~-i~~~~~~G 794 (1283)
....+++|+|+||||+ |.+.+++|++..+ ++.+. .|..|++.++......... ...+...+ . +......+
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN 318 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 73799980999954569999999986788888869979997667317999656875414566778899999999975699
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHHCCC------------------------CCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 799992999999999999999999852034------------------------68999818998359999999999996
Q 000790 795 DILIFMTGQDEIEAACFALKERMEQLISST------------------------TREVPELLILPIYSQLPADLQAKIFE 850 (1283)
Q Consensus 795 ~ILVFl~g~~eie~l~~~L~e~l~~l~~~~------------------------~~~~~~l~Il~lHs~L~~~er~~If~ 850 (1283)
++||||+++..++.++..|.+.+....... ........|.++||+|+.++|..|++
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_conf 68998788899999999999987645521221333305788877664024448899986457788759999999999999
Q ss_pred HHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEEC
Q ss_conf 705998059994673101578897669998488551110687896433312159987999826259999---97899902
Q 000790 851 KAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLY 927 (1283)
Q Consensus 851 ~f~~G~rkVIVATnIaEtGItIp~I~~VIDsG~~K~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLy 927 (1283)
.|+.|..+|||||++++.|||+|++.+||. ...+||+..|.. .|+|..+|.||+|||||.| .|.++.+.
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYSPEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEETTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHCCCCEEEEECCHHHHHCCCCCCEEEEE----CCEEECCCCCCC----CCCCHHHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 987799749998426671388887069982----887704767875----638999998764012688888764799983
Q ss_pred CHHHH--HHHCCCCCCC-H-HHCCCHHHHHHHHHHCCC-CC----------------------CCCC--------CCCCC
Q ss_conf 84566--2105999961-1-231562579999751266-76----------------------6677--------78999
Q 000790 928 TESAY--LNEMLPSPVP-E-IQRTNLGNVVLLLKSLKI-DN----------------------LLDF--------DFMDP 972 (1283)
Q Consensus 928 te~~~--~~~l~~~~~P-E-I~r~~L~~vvL~Lk~lgi-~~----------------------l~~f--------~fldp 972 (1283)
+..+. ...+.....| | -...+|...++...++|. .+ +..+ +.++.
T Consensus 471 ~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~ 550 (1724)
T 4f92_B 471 SHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQ 550 (1724)
T ss_dssp ESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHH
T ss_conf 50259999999749985102033107889999998702478999999996437887753274654367100123637899
Q ss_pred CCHHHHHHHHHHHHHHCCCCC---CC--CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHH-HHHHHHHHHC-CCCCCCCC
Q ss_conf 984459989999988244346---89--77799999972999968899987431038669-9999999816-99744587
Q 000790 973 PPQENILNSMYQLWVLGALNN---VG--ALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLD-EVLTIVSMLS-VPSVFFRP 1045 (1283)
Q Consensus 973 P~~~~i~~al~~L~~lgaLd~---~g--~LT~lGr~ma~lPldp~lak~Ll~~~~~~c~~-e~ltIva~Ls-~~~~f~~p 1045 (1283)
...+.+..++..|...++|.- .| ..|++|++|+.+.++|..++.+.......+.+ ++|.++|+.+ ..++..+.
T Consensus 551 ~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~ 630 (1724)
T 4f92_B 551 RRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVRE 630 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCG
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCH
T ss_conf 99999999999998879901406778643444879999836899999999863588899999999975775216677077
Q ss_pred HHHHHH
Q ss_conf 105999
Q 000790 1046 KDRAEE 1051 (1283)
Q Consensus 1046 ~~~~~~ 1051 (1283)
.+..+.
T Consensus 631 ~E~~~l 636 (1724)
T 4f92_B 631 EEKLEL 636 (1724)
T ss_dssp GGHHHH
T ss_pred HHHHHH
T ss_conf 899999
No 9
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=360.78 Aligned_cols=386 Identities=17% Similarity=0.180 Sum_probs=265.5
Q ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 59987999999999990993999814898768999999997022699899996525899999999999984021398666
Q 000790 584 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 663 (1283)
Q Consensus 584 ~LPi~~~Q~eiL~~I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~e~g~~lG~~VG 663 (1283)
.++..++|.++++.+..++++++++|||||||+++...+... ...+++++|++|+++|+.|++.++...++ +..++
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~ 112 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIG 112 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHHCC---CCEEE
T ss_conf 999999999999999849989999799985899999999999-83598599995879999999999999769---98399
Q ss_pred EEEEEEECCCCCCEEEEECHHHHHHHHCCCC-CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-C
Q ss_conf 9884321169970099955068899870399-9998732998189967866129999999999714995499952576-9
Q 000790 664 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL-N 741 (1283)
Q Consensus 664 y~ir~e~~~s~~t~I~~~T~G~LLr~l~~d~-~L~~is~IIIDEaHERsl~tD~Ll~lLk~il~~r~dlkiIlmSATl-d 741 (1283)
... +.......+.|+|+|+++|+..+.... .+.++++||||||| +..+.++...+...+...++++++|+||||+ +
T Consensus 113 ~l~-G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 113 LIT-GDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPN 190 (997)
T ss_dssp EEC-SSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTT
T ss_pred EEE-CCCCCCCCCCEEEECHHHHHHHHHHCCHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 996-898667999989988999999998181120578899998954-666654489999999854668878997699897
Q ss_pred HHHHHHHHCC-----CCEEEECCCCCCEEEEECCCC-------------HHHHHH-------------------------
Q ss_conf 9899977289-----993730686333014534798-------------046999-------------------------
Q 000790 742 AQKFSDFFGS-----VPIFHIPGRTFPVNTLYSKTP-------------CEDYVE------------------------- 778 (1283)
Q Consensus 742 ~~~la~~f~~-----~pvi~i~gr~~pV~i~y~~~~-------------~~dyv~------------------------- 778 (1283)
...|++|++. +.++..+.+.+|+..++.... ...+..
T Consensus 191 ~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (997)
T 4a4z_A 191 TYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 270 (997)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 68999998323588659983688875646888548750000042035667779999998632243343210000012222
Q ss_pred ---------------------------------------------------HHHHHHHHHHHCCCCCCEEEECCCHHHHH
Q ss_conf ---------------------------------------------------99999999861399997999929999999
Q 000790 779 ---------------------------------------------------AAVKQAMTIHITSPPGDILIFMTGQDEIE 807 (1283)
Q Consensus 779 ---------------------------------------------------~~i~~~l~i~~~~~~G~ILVFl~g~~eie 807 (1283)
..+..++........+++||||+++.+|+
T Consensus 271 ~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e 350 (997)
T 4a4z_A 271 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCE 350 (997)
T ss_dssp ----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 23444432123543334444455544444334443456654221224666668999999998479997899989888999
Q ss_pred HHHHHHHHH----------HHHHHCCCCC----------------CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999----------9985203468----------------99981899835999999999999670599805999
Q 000790 808 AACFALKER----------MEQLISSTTR----------------EVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIV 861 (1283)
Q Consensus 808 ~l~~~L~e~----------l~~l~~~~~~----------------~~~~l~Il~lHs~L~~~er~~If~~f~~G~rkVIV 861 (1283)
.++..|... +......... ......|.++||+|++.+|..++..|..|..+|||
T Consensus 351 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLv 430 (997)
T 4a4z_A 351 EYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF 430 (997)
T ss_dssp HHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999845799977889999999999997446544211247878888636846624999999999999999779983999
Q ss_pred ECCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEECCHHH----HHH
Q ss_conf 4673101578897669998488551110687896433312159987999826259999---978999028456----621
Q 000790 862 ATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESA----YLN 934 (1283)
Q Consensus 862 ATnIaEtGItIp~I~~VIDsG~~K~~~yd~~~g~~~L~~~PiS~as~~QRaGRAGR~g---~G~cyrLyte~~----~~~ 934 (1283)
||+++++|||+|+ .+||..+..+ ||+. ...|+|..+|.||+|||||.| .|.||.++.... ...
T Consensus 431 AT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 431 ATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp ECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred ECHHHHCCCCCCC-CEEEEECCCC---CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 7208667798888-6699940532---4676------6777999998277413356887763599996488852399999
Q ss_pred HCCCCCCCHHHCC------CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0599996112315------625799997512667666777899998445998999998
Q 000790 935 EMLPSPVPEIQRT------NLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLW 986 (1283)
Q Consensus 935 ~l~~~~~PEI~r~------~L~~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al~~L~ 986 (1283)
.+. ...|+.+++ ++...+|++..+++.+++.+.|.+.+....+......|.
T Consensus 501 ~~i-~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~ 557 (997)
T 4a4z_A 501 EVT-MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK 557 (997)
T ss_dssp HHH-HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHH-CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 996-089961201236506778878765104699999998999999751699999999
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=345.53 Aligned_cols=306 Identities=20% Similarity=0.219 Sum_probs=231.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 99999970599879999999999909939998148987689999999970226998999965258999999999999840
Q 000790 576 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 655 (1283)
Q Consensus 576 ~~l~~~R~~LPi~~~Q~eiL~~I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~e~g 655 (1283)
.+.+++|..||++.+|++++..+..+++++++||||||||+++++++++. +.+++|++|+|++|.|+++++++.++
T Consensus 207 ~e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 67654302597599999999999769849999189514999999999978----99699996549999999999999859
Q ss_pred CCCCCEEEEEEEEEECCCCCCEEEEECHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 21398666988432116997009995506889987039999987329981899678661299999999997149954999
Q 000790 656 TELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 735 (1283)
Q Consensus 656 ~~lG~~VGy~ir~e~~~s~~t~I~~~T~G~LLr~l~~d~~L~~is~IIIDEaHERsl~tD~Ll~lLk~il~~r~dlkiIl 735 (1283)
..++..+|+.. ......|+|+|+|.|+.. ....+.++++|||||||+++...+..+..+...+.......+++
T Consensus 283 ~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil 355 (666)
T 3o8b_A 283 IDPNIRTGVRT-----ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVL 355 (666)
T ss_dssp CCCEEECSSCE-----ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCEE-----CCCCCCEEEECCHHHHHC--CCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 97258988576-----158989999890788748--87454751589982623248467999999998624127726999
Q ss_pred ECCCCCHHHHHHHHC-CCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 525769989997728-9993730686333014534798046999999999998613999979999299999999999999
Q 000790 736 TSATLNAQKFSDFFG-SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALK 814 (1283)
Q Consensus 736 mSATld~~~la~~f~-~~pvi~i~gr~~pV~i~y~~~~~~dyv~~~i~~~l~i~~~~~~G~ILVFl~g~~eie~l~~~L~ 814 (1283)
||||++.. +. ..+. ..++...+... . .+....+ . ......+++||||+++++++.++..|.
T Consensus 356 ~SAT~~~~-----i~~~~p~------i~~v~~~~~~~-i-~~~~~~~----~-l~~~~~~~vLVFv~Tr~~ae~la~~L~ 417 (666)
T 3o8b_A 356 ATATPPGS-----VTVPHPN------IEEVALSNTGE-I-PFYGKAI----P-IEAIRGGRHLIFCHSKKKCDELAAKLS 417 (666)
T ss_dssp EESSCTTC-----CCCCCTT------EEEEECBSCSS-E-EETTEEE----C-GGGSSSSEEEEECSCHHHHHHHHHHHH
T ss_pred ECCCCCCC-----CCCCCCC------EEEEEECCCCH-H-HHHHHHH----H-HHHCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 87889844-----4567761------47775023204-6-7887643----4-554069958999688899999999998
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEE----CC
Q ss_conf 99998520346899981899835999999999999670599805999467310157889766999848855111----06
Q 000790 815 ERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV----YN 890 (1283)
Q Consensus 815 e~l~~l~~~~~~~~~~l~Il~lHs~L~~~er~~If~~f~~G~rkVIVATnIaEtGItIp~I~~VIDsG~~K~~~----yd 890 (1283)
+ .++.+.++||+|++.+ |..+..+|||||+++++||||| |.+|||+|+.+..+ ||
T Consensus 418 ~-------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDyd 476 (666)
T 3o8b_A 418 G-------------LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLD 476 (666)
T ss_dssp T-------------TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCS
T ss_pred H-------------CCCCEEEECCCCCHHH-------HHHCCCCEEEECCHHHCCCCCC-CCEEEECCCCCCCCCCCCCC
T ss_conf 6-------------7993898608788999-------9728984999897477267789-75899667643221123555
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHH
Q ss_conf 8789643331215998799982625999997899902845662
Q 000790 891 PKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYL 933 (1283)
Q Consensus 891 ~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G~cyrLyte~~~~ 933 (1283)
|..++..+ ..|++.++|.||+|||||..+|. |.||++.+..
T Consensus 477 P~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 477 PTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp SSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred CCCCCCCC-CCCCCHHHHHHHHCCCCCCCCCE-EEEEECCHHH
T ss_conf 32232235-57699999999863578899988-9998231310
Done!