BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000791
         (1282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
           Regulator Protein (Aire1): Insights Into Apeced
 pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
           Recognition By The First Phd Finger Of Autoimmune
           Regulator
          Length = 66

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDW 870
           +N+ +C+VC  GGEL+ CD CP +FH  C+   L ++P G W
Sbjct: 6   KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTW 47


>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
           Terminal Loop Replaced By Corresponding Loop From Wstf
          Length = 61

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 2/37 (5%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNCV--GLEDVPDGDW 870
           C VC  GGELL CD CPSS+H +C+   L +VPDG+W
Sbjct: 12  CRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEW 48


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
          Length = 61

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 825 GNLLQGENDYK--CSVCHFGGELLLCDRCPSSFHRNCV--GLEDVPDGDW 870
           G L   E D++  C VC  GGE++LCD CP ++H  C+   +E  P+G W
Sbjct: 1   GPLGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKW 50


>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
           Human Autoimmune Regulator (Aire) In Complex With
           Histone H3(1-20cys) Peptide
          Length = 56

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDW 870
           +N+ +C+VC  GGEL+ CD CP +FH  C+   L ++P G W
Sbjct: 3   KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTW 44


>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
 pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
          Length = 61

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWF 871
           C VC  GGELL CD CPSS+H +C+   L ++P+G+W 
Sbjct: 12  CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 49


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
          Length = 184

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 28/127 (22%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDWFXXXXXXXXXXXXXXREEVEDVV 893
           C+VC  GGELL C++CP  FH +C    L + P G+W               + EVE   
Sbjct: 7   CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWI------CTFCRDLSKPEVE--- 57

Query: 894 DGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGL-----QRLLGKP 948
                  + C+   H     N    K +   K T    +KCE + L L           P
Sbjct: 58  -------YDCDAPSH-----NSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDP 105

Query: 949 IPIGVPN 955
           +P+ VP+
Sbjct: 106 VPLTVPD 112


>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
          Length = 207

 Score = 43.1 bits (100), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDWF 871
           C+VC  GG+LL C++CP  FH  C    L   P GDW 
Sbjct: 10  CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWI 47


>pdb|1F62|A Chain A, Wstf-Phd
          Length = 51

 Score = 40.0 bits (92), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 835 KCSVCHFGGE---LLLCDRCPSSFHRNCV--GLEDVPDGDW 870
           +C VC   GE   L+LCD C  +FH  C+   L +VPDG+W
Sbjct: 2   RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEW 42


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 37.4 bits (85), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWF 871
           CSVC   G+LL+CD C   +H +C+   L+ +P G W 
Sbjct: 8   CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWI 45


>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
 pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
 pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
           Complexed With H3 Peptide 1-7
 pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
           Complexed With H3 Peptide 1-15
 pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
           Complexed With H3k9me3 Peptide
 pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
           Complexed With H3k9me3 Peptide
          Length = 107

 Score = 37.4 bits (85), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 822 RLKGNLLQGENDYKCSVCHFGGELLLCDR--CPSSFHRNCVGLEDVPDGDW 870
           ++K    Q   DY C  C  GGEL++CD+  CP ++H  C+ L   P G W
Sbjct: 5   KIKTEPKQMHEDY-CFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKW 54


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
           21a
          Length = 56

 Score = 37.0 bits (84), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 830 GENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWF 871
           G  D+ CSVC   G+LL+CD C   +H +C+   L+ +P G W 
Sbjct: 7   GHEDF-CSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWI 49


>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
          Length = 71

 Score = 36.2 bits (82), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 831 ENDYKCSVCHFGGE-----LLLCDRCPSSFHRNCVGLEDVPDGDWF 871
           + D  CS+C  G       +L CD C  + H+ C G+  +P+G W 
Sbjct: 14  DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL 59


>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
           Finger-Bromodomain
          Length = 189

 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDW 870
           C VC   G+L++C++C   FH +C    L+DVP  +W
Sbjct: 5   CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEW 41


>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
           Brpf2-Phd1 Finger
          Length = 88

 Score = 36.2 bits (82), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 831 ENDYKCSVCHFGGE-----LLLCDRCPSSFHRNCVGLEDVPDGDWF 871
           + D  CS+C  G       +L CD C  + H+ C G+  +P+G W 
Sbjct: 23  DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL 68


>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
           Corepressor
          Length = 88

 Score = 33.5 bits (75), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 836 CSVCHFGGELLLCDRCPSSFHRNC--VGLEDVPDGDW 870
           C VC   G+L++C++C   FH +C    L+DVP  +W
Sbjct: 28  CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEW 64


>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
           Protein 3 (Ing3)
          Length = 70

 Score = 33.1 bits (74), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 843 GELLLCDR--CP-SSFHRNCVGLEDVPDGDWF 871
           GE++ CD   CP   FH  CVGL + P G W+
Sbjct: 17  GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWY 48


>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
          Length = 92

 Score = 32.7 bits (73), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 832 NDYKCSVCHFGGE---LLLCDRCPSSFHRNCV--GLEDVPDGDW 870
           + Y C VC  G E   LL CD C  ++H  C+   L ++P G W
Sbjct: 15  DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIW 58


>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
          Length = 76

 Score = 32.7 bits (73), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 759 RDGIKCKCCGKVYTLSGFEDHAGSTYCN 786
           R  +KC+ CGK  T  G  +H G  YCN
Sbjct: 25  RPCLKCEKCGKTLTSGGHAEHEGKPYCN 52


>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
 pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
 pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
           With Amp
 pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
           Salicylate
 pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
           Salicylate
          Length = 581

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 210 KKLKDWTSSVRALWNELIWEVIYDNIK------IVVDSF---LVAAGIPQSSEQEVQPIL 260
           K+LKD TS+V+++ + L+ E+I  N K       ++D F   L    +P  S ++++P L
Sbjct: 19  KQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYL 78

Query: 261 E 261
           +
Sbjct: 79  D 79


>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
           Adenylyl Cyclase Rv1625c
          Length = 204

 Score = 32.3 bits (72), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 223 WNELIWEVIYDNIKIVVDSFLVAAGIPQSSEQEVQPILEFYRSATNVT---EDP---PIE 276
           ++EL+ +   + I++  DS++V +G+P+      Q + +F    TNV    +DP   P+ 
Sbjct: 44  FDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPRGNPVP 103

Query: 277 SADSLAVVPV 286
               LA  PV
Sbjct: 104 LRVGLATGPV 113


>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
 pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
          Length = 581

 Score = 32.3 bits (72), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 210 KKLKDWTSSVRALWNELIWEVIYDNIK------IVVDSF---LVAAGIPQSSEQEVQPIL 260
           K+LKD TS+V+++ + L+ E+I  N K       ++D F   L    +P  S ++++P L
Sbjct: 19  KQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYL 78

Query: 261 E 261
           +
Sbjct: 79  D 79


>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
           Yng1 Protein In Free State
 pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
           Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
          Length = 90

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 843 GELLLCDR--CPSS-FHRNCVGLEDVPDGDWF 871
           G ++ CD   CP   FH  CVGL+  P G W+
Sbjct: 37  GPMVACDNPACPFEWFHYGCVGLKQAPKGKWY 68


>pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add
           Domain Of The Atrx Protein
 pdb|2LBM|A Chain A, Solution Structure Of The Add Domain Of Atrx Complexed
           With Histone Tail H3 1-15 K9me3
          Length = 142

 Score = 30.8 bits (68), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 833 DYKCSVCHFGGELLLCDRCPSSFHRNCV 860
           D +C  C  GG L+ CD C ++F + C+
Sbjct: 63  DEQCRWCAEGGNLICCDFCHNAFCKKCI 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,884,826
Number of Sequences: 62578
Number of extensions: 1646847
Number of successful extensions: 3867
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3831
Number of HSP's gapped (non-prelim): 51
length of query: 1282
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1172
effective length of database: 8,089,757
effective search space: 9481195204
effective search space used: 9481195204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)