Query 000791
Match_columns 1282
No_of_seqs 506 out of 1962
Neff 4.7
Searched_HMMs 46136
Date Mon Apr 1 23:33:23 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05641 Agenet: Agenet domain 99.6 3.9E-16 8.4E-21 140.7 6.2 65 22-104 1-67 (68)
2 PRK10314 putative acyltransfer 99.4 1.3E-12 2.8E-17 134.2 8.8 97 1025-1122 48-147 (153)
3 COG2153 ElaA Predicted acyltra 99.1 6.5E-11 1.4E-15 120.3 7.3 100 1025-1125 49-152 (155)
4 smart00743 Agenet Tudor-like d 99.0 4.4E-10 9.5E-15 98.8 6.5 55 110-165 2-60 (61)
5 PF13508 Acetyltransf_7: Acety 99.0 3.8E-09 8.3E-14 95.9 10.5 77 1025-1106 3-79 (79)
6 KOG1512 PHD Zn-finger protein 98.9 2.3E-10 4.9E-15 125.6 1.2 88 834-935 259-361 (381)
7 KOG1244 Predicted transcriptio 98.9 3.9E-10 8.5E-15 123.2 1.7 90 834-936 225-330 (336)
8 PF00583 Acetyltransf_1: Acety 98.9 7.6E-09 1.6E-13 93.1 9.7 74 1031-1105 2-83 (83)
9 PF13673 Acetyltransf_10: Acet 98.8 1.7E-08 3.6E-13 96.4 9.7 74 1025-1104 44-117 (117)
10 PRK10146 aminoalkylphosphonic 98.7 2.7E-08 5.9E-13 98.5 8.6 84 1027-1111 49-140 (144)
11 COG1246 ArgA N-acetylglutamate 98.7 2.3E-08 4.9E-13 103.4 7.5 87 1022-1112 39-126 (153)
12 PTZ00330 acetyltransferase; Pr 98.7 7.5E-08 1.6E-12 95.7 10.0 84 1026-1110 53-142 (147)
13 KOG0956 PHD finger protein AF1 98.7 1E-08 2.2E-13 122.7 3.4 108 835-946 7-189 (900)
14 cd02169 Citrate_lyase_ligase C 98.6 6.5E-08 1.4E-12 110.2 9.0 76 1027-1108 7-83 (297)
15 PLN02706 glucosamine 6-phospha 98.6 2E-07 4.3E-12 93.7 10.3 83 1026-1109 54-144 (150)
16 PRK03624 putative acetyltransf 98.6 1.3E-07 2.9E-12 91.8 8.6 83 1025-1109 45-130 (140)
17 TIGR01575 rimI ribosomal-prote 98.6 3.4E-07 7.4E-12 88.2 11.0 82 1026-1109 32-116 (131)
18 PRK07757 acetyltransferase; Pr 98.6 2.2E-07 4.7E-12 93.6 9.5 82 1028-1112 44-125 (152)
19 PF13527 Acetyltransf_9: Acety 98.6 3.7E-07 8.1E-12 88.9 10.6 111 982-1107 10-127 (127)
20 TIGR02382 wecD_rffC TDP-D-fuco 98.5 4.9E-07 1.1E-11 95.7 11.8 81 1028-1109 102-185 (191)
21 PRK10975 TDP-fucosamine acetyl 98.5 7.1E-07 1.5E-11 94.5 12.6 85 1024-1109 101-188 (194)
22 PRK07922 N-acetylglutamate syn 98.5 3.1E-07 6.7E-12 96.1 9.7 80 1028-1110 48-128 (169)
23 PRK09491 rimI ribosomal-protei 98.5 5E-07 1.1E-11 90.6 10.0 84 1024-1109 39-125 (146)
24 PLN02825 amino-acid N-acetyltr 98.5 4.3E-07 9.2E-12 110.2 10.0 83 1028-1112 410-493 (515)
25 smart00743 Agenet Tudor-like d 98.5 5.1E-07 1.1E-11 79.5 7.6 58 20-103 1-59 (61)
26 TIGR00124 cit_ly_ligase [citra 98.4 6.1E-07 1.3E-11 103.8 10.0 82 1023-1110 29-110 (332)
27 TIGR01890 N-Ac-Glu-synth amino 98.4 6.8E-07 1.5E-11 106.4 10.1 83 1028-1112 325-408 (429)
28 PHA00673 acetyltransferase dom 98.4 1.6E-06 3.6E-11 90.3 11.5 87 1026-1113 56-150 (154)
29 PRK13688 hypothetical protein; 98.4 8.5E-07 1.8E-11 92.4 9.2 79 1026-1110 46-134 (156)
30 TIGR03827 GNAT_ablB putative b 98.4 1.1E-06 2.3E-11 98.3 9.5 84 1025-1109 158-245 (266)
31 PRK12308 bifunctional arginino 98.4 9E-07 2E-11 109.9 9.8 81 1028-1111 506-586 (614)
32 PRK05279 N-acetylglutamate syn 98.4 1.3E-06 2.7E-11 104.4 10.3 83 1028-1112 337-420 (441)
33 KOG4443 Putative transcription 98.3 2E-07 4.3E-12 112.5 1.6 89 832-932 17-114 (694)
34 PRK09831 putative acyltransfer 98.3 2E-06 4.3E-11 87.0 7.8 74 1027-1111 55-128 (147)
35 PRK10140 putative acetyltransf 98.3 3.9E-06 8.4E-11 84.5 9.5 84 1025-1110 51-142 (162)
36 TIGR03448 mycothiol_MshD mycot 98.2 7.8E-06 1.7E-10 91.3 11.8 82 1025-1109 46-128 (292)
37 COG5141 PHD zinc finger-contai 98.2 4.4E-07 9.4E-12 106.0 1.7 91 828-918 188-339 (669)
38 KOG3396 Glucosamine-phosphate 98.2 4.9E-06 1.1E-10 84.5 8.4 83 1025-1108 53-143 (150)
39 KOG3139 N-acetyltransferase [G 98.1 1E-05 2.2E-10 84.4 9.3 75 1036-1111 68-148 (165)
40 TIGR02406 ectoine_EctA L-2,4-d 98.1 9.1E-06 2E-10 83.9 8.8 81 1026-1107 40-126 (157)
41 PF13420 Acetyltransf_4: Acety 98.1 2E-05 4.2E-10 79.3 10.7 82 1026-1109 51-139 (155)
42 COG0456 RimI Acetyltransferase 98.0 1.6E-05 3.6E-10 81.3 9.1 75 1035-1110 72-155 (177)
43 TIGR03448 mycothiol_MshD mycot 98.0 1.6E-05 3.4E-10 88.9 9.6 76 1033-1109 208-288 (292)
44 PHA01807 hypothetical protein 98.0 1.4E-05 3.1E-10 83.2 7.9 82 1026-1110 54-142 (153)
45 TIGR03103 trio_acet_GNAT GNAT- 98.0 2.2E-05 4.9E-10 96.5 10.4 85 1024-1109 122-217 (547)
46 KOG0825 PHD Zn-finger protein 98.0 2.1E-06 4.5E-11 104.6 1.1 117 730-876 142-264 (1134)
47 KOG1512 PHD Zn-finger protein 98.0 2.2E-06 4.7E-11 95.0 0.9 95 740-875 261-360 (381)
48 KOG4299 PHD Zn-finger protein 97.9 2.2E-06 4.9E-11 103.5 0.8 46 833-878 253-305 (613)
49 KOG1244 Predicted transcriptio 97.9 2.6E-06 5.7E-11 94.0 1.0 80 759-876 244-329 (336)
50 PRK10514 putative acetyltransf 97.9 2.6E-05 5.5E-10 77.8 7.9 86 1030-1123 55-141 (145)
51 KOG4443 Putative transcription 97.9 1.5E-06 3.2E-11 105.2 -1.2 109 835-944 70-216 (694)
52 KOG4299 PHD Zn-finger protein 97.9 6.4E-06 1.4E-10 99.7 4.0 44 833-876 47-93 (613)
53 cd04301 NAT_SF N-Acyltransfera 97.9 5.3E-05 1.1E-09 62.3 8.4 61 1028-1088 2-64 (65)
54 PRK01346 hypothetical protein; 97.9 3.7E-05 8.1E-10 90.6 10.1 81 1027-1110 49-137 (411)
55 KOG4323 Polycomb-like PHD Zn-f 97.9 6.9E-06 1.5E-10 97.6 3.6 107 834-947 84-234 (464)
56 PRK10562 putative acetyltransf 97.9 3.3E-05 7.1E-10 77.7 7.8 81 1026-1113 49-129 (145)
57 TIGR01211 ELP3 histone acetylt 97.9 3.6E-05 7.9E-10 94.0 9.4 78 1032-1110 421-517 (522)
58 KOG0955 PHD finger protein BR1 97.8 8.2E-06 1.8E-10 104.8 3.4 47 830-876 216-267 (1051)
59 PF13523 Acetyltransf_8: Acety 97.8 9.2E-05 2E-09 74.8 10.2 88 1022-1110 45-142 (152)
60 TIGR01686 FkbH FkbH-like domai 97.8 0.0001 2.2E-09 84.8 11.3 81 1025-1107 231-319 (320)
61 PRK15130 spermidine N1-acetylt 97.8 8.5E-05 1.9E-09 77.7 9.7 83 1026-1110 58-146 (186)
62 TIGR03585 PseH pseudaminic aci 97.8 0.00012 2.6E-09 73.7 10.1 81 1027-1110 53-139 (156)
63 KOG0954 PHD finger protein [Ge 97.8 7.5E-06 1.6E-10 99.8 1.7 109 829-938 267-440 (893)
64 PF08445 FR47: FR47-like prote 97.8 0.00012 2.5E-09 69.2 8.9 77 1030-1109 4-82 (86)
65 COG3393 Predicted acetyltransf 97.7 6.6E-05 1.4E-09 83.9 7.9 82 1027-1109 179-262 (268)
66 PRK10809 ribosomal-protein-S5- 97.6 0.00026 5.6E-09 74.7 8.9 82 1026-1109 78-166 (194)
67 COG3153 Predicted acetyltransf 97.5 0.00089 1.9E-08 71.3 12.4 130 986-1135 18-152 (171)
68 KOG0383 Predicted helicase [Ge 97.5 6E-05 1.3E-09 93.9 3.7 69 850-934 1-91 (696)
69 PRK10151 ribosomal-protein-L7/ 97.5 0.00065 1.4E-08 70.7 10.4 81 1028-1110 70-156 (179)
70 PF00628 PHD: PHD-finger; Int 97.5 3.8E-05 8.3E-10 65.2 0.9 42 835-876 1-49 (51)
71 KOG3397 Acetyltransferases [Ge 97.4 0.00038 8.2E-09 73.5 8.0 85 1027-1113 57-145 (225)
72 PF13302 Acetyltransf_3: Acety 97.4 0.00079 1.7E-08 66.3 9.6 79 1025-1105 56-142 (142)
73 KOG3216 Diamine acetyltransfer 97.4 0.0014 3.1E-08 68.2 11.6 135 975-1127 13-156 (163)
74 KOG1973 Chromatin remodeling p 97.4 5.4E-05 1.2E-09 85.8 1.5 41 835-876 223-266 (274)
75 smart00249 PHD PHD zinc finger 97.4 0.00012 2.7E-09 59.5 3.0 41 835-875 1-47 (47)
76 KOG1473 Nucleosome remodeling 97.4 5.7E-05 1.2E-09 95.5 1.3 100 831-932 342-475 (1414)
77 COG5034 TNG2 Chromatin remodel 97.2 0.00017 3.8E-09 79.7 2.1 44 832-876 220-268 (271)
78 KOG0383 Predicted helicase [Ge 97.1 0.00013 2.8E-09 91.1 0.8 50 829-878 43-94 (696)
79 KOG0825 PHD Zn-finger protein 97.1 0.00015 3.2E-09 89.1 0.7 48 876-936 217-265 (1134)
80 PF13718 GNAT_acetyltr_2: GNAT 97.0 0.00085 1.8E-08 72.9 5.7 84 999-1108 65-175 (196)
81 PF00628 PHD: PHD-finger; Int 97.0 0.00026 5.7E-09 60.1 1.2 48 877-935 2-49 (51)
82 COG1247 Sortase and related ac 96.9 0.0039 8.5E-08 66.5 9.1 109 1023-1135 50-166 (169)
83 smart00249 PHD PHD zinc finger 96.8 0.0011 2.5E-08 53.9 3.2 45 877-932 2-46 (47)
84 smart00333 TUDOR Tudor domain. 96.6 0.0071 1.5E-07 52.3 6.7 54 21-103 2-56 (57)
85 PF15446 zf-PHD-like: PHD/FYVE 96.5 0.0018 4E-08 68.3 3.3 82 835-916 1-143 (175)
86 PF12746 GNAT_acetyltran: GNAT 96.4 0.016 3.5E-07 65.9 10.2 77 1029-1107 169-245 (265)
87 KOG1973 Chromatin remodeling p 96.3 0.0018 3.8E-08 73.8 1.9 36 895-936 230-268 (274)
88 COG1444 Predicted P-loop ATPas 96.2 0.0088 1.9E-07 75.8 7.7 57 1050-1108 532-590 (758)
89 KOG4144 Arylalkylamine N-acety 95.8 0.0065 1.4E-07 63.5 3.0 66 1042-1109 95-161 (190)
90 PF14542 Acetyltransf_CG: GCN5 95.8 0.038 8.3E-07 51.7 7.8 57 1029-1086 3-59 (78)
91 KOG3138 Predicted N-acetyltran 95.7 0.0098 2.1E-07 64.4 4.3 61 1049-1110 89-153 (187)
92 cd04718 BAH_plant_2 BAH, or Br 95.7 0.0068 1.5E-07 63.2 2.8 31 854-884 1-33 (148)
93 KOG2488 Acetyltransferase (GNA 95.7 0.026 5.6E-07 61.0 6.9 83 1026-1109 94-182 (202)
94 COG1670 RimL Acetyltransferase 95.6 0.061 1.3E-06 54.6 9.4 89 1023-1113 64-162 (187)
95 COG0454 WecD Histone acetyltra 95.6 0.013 2.8E-07 51.1 3.7 44 1055-1104 87-130 (156)
96 smart00333 TUDOR Tudor domain. 95.5 0.031 6.8E-07 48.3 5.8 51 110-161 2-53 (57)
97 KOG0957 PHD finger protein [Ge 95.3 0.006 1.3E-07 72.6 1.0 57 877-946 547-609 (707)
98 PF08444 Gly_acyl_tr_C: Aralky 95.3 0.027 5.8E-07 54.4 5.0 75 1029-1108 3-79 (89)
99 KOG1245 Chromatin remodeling c 95.0 0.0056 1.2E-07 82.3 -0.4 46 831-876 1106-1156(1404)
100 KOG3235 Subunit of the major N 95.0 0.064 1.4E-06 56.7 7.1 83 1028-1110 44-136 (193)
101 KOG0957 PHD finger protein [Ge 95.0 0.011 2.4E-07 70.5 1.8 44 833-876 119-177 (707)
102 PF15057 DUF4537: Domain of un 94.9 0.19 4E-06 51.3 10.2 92 25-148 1-100 (124)
103 PF12568 DUF3749: Acetyltransf 94.8 0.2 4.4E-06 51.4 10.0 77 1029-1109 42-125 (128)
104 COG5034 TNG2 Chromatin remodel 94.8 0.014 3E-07 65.2 1.7 35 895-936 232-269 (271)
105 PF13831 PHD_2: PHD-finger; PD 94.6 0.005 1.1E-07 49.9 -1.5 34 843-876 2-36 (36)
106 COG2388 Predicted acetyltransf 94.6 0.085 1.8E-06 52.0 6.6 64 1023-1088 15-78 (99)
107 PF05641 Agenet: Agenet domain 94.3 0.082 1.8E-06 48.2 5.3 53 111-164 1-66 (68)
108 PF11717 Tudor-knot: RNA bindi 94.2 0.11 2.5E-06 45.5 5.7 48 22-78 1-52 (55)
109 KOG3234 Acetyltransferase, (GN 93.7 0.074 1.6E-06 56.1 4.4 57 1050-1107 70-129 (173)
110 COG3053 CitC Citrate lyase syn 93.2 0.24 5.2E-06 56.8 7.6 79 1026-1110 37-116 (352)
111 KOG4323 Polycomb-like PHD Zn-f 92.9 0.029 6.3E-07 67.7 0.0 42 835-876 170-222 (464)
112 PF09465 LBR_tudor: Lamin-B re 92.8 0.56 1.2E-05 41.7 7.7 49 109-158 4-54 (55)
113 TIGR03694 exosort_acyl putativ 92.6 0.53 1.1E-05 52.9 9.4 93 1016-1110 47-201 (241)
114 PF13480 Acetyltransf_6: Acety 92.6 0.94 2E-05 44.4 10.1 82 1003-1091 55-136 (142)
115 PF12148 DUF3590: Protein of u 92.3 0.21 4.6E-06 48.0 4.9 62 37-122 8-77 (85)
116 cd04718 BAH_plant_2 BAH, or Br 92.3 0.065 1.4E-06 56.1 1.5 26 906-936 1-26 (148)
117 COG1243 ELP3 Histone acetyltra 92.2 0.11 2.5E-06 62.5 3.7 64 1042-1109 446-509 (515)
118 cd04508 TUDOR Tudor domains ar 92.1 0.47 1E-05 39.6 6.2 43 25-77 1-44 (48)
119 COG4552 Eis Predicted acetyltr 91.8 0.26 5.7E-06 57.8 5.9 83 1020-1109 36-127 (389)
120 cd04508 TUDOR Tudor domains ar 91.5 0.37 7.9E-06 40.3 4.9 46 114-160 1-48 (48)
121 PF06852 DUF1248: Protein of u 89.3 1.5 3.3E-05 47.6 8.5 82 1026-1109 48-137 (181)
122 KOG1245 Chromatin remodeling c 89.0 0.11 2.5E-06 70.3 -0.2 50 877-939 1111-1160(1404)
123 PF07039 DUF1325: SGF29 tudor- 87.9 7.1 0.00015 40.4 11.9 106 23-150 1-114 (130)
124 KOG0955 PHD finger protein BR1 87.7 0.29 6.4E-06 64.4 2.3 46 877-935 222-267 (1051)
125 COG3981 Predicted acetyltransf 87.7 0.89 1.9E-05 48.9 5.4 66 1026-1093 71-141 (174)
126 PRK13834 putative autoinducer 86.6 3.3 7.2E-05 45.7 9.3 94 1016-1110 44-168 (207)
127 PF00855 PWWP: PWWP domain; I 86.5 1.2 2.7E-05 41.4 5.1 53 111-163 1-60 (86)
128 KOG1246 DNA-binding protein ju 85.7 0.49 1.1E-05 62.4 2.7 118 832-978 154-277 (904)
129 PF00765 Autoind_synth: Autoin 85.6 4.5 9.8E-05 43.9 9.5 90 1016-1106 36-152 (182)
130 smart00561 MBT Present in Dros 84.9 4.4 9.6E-05 39.8 8.2 54 17-77 23-76 (96)
131 cd05835 Dnmt3b_related The PWW 84.8 1 2.2E-05 43.3 3.7 56 111-166 1-63 (87)
132 PF06003 SMN: Survival motor n 84.7 2 4.2E-05 49.3 6.6 57 109-165 67-125 (264)
133 KOG0954 PHD finger protein [Ge 84.4 0.48 1E-05 59.6 1.7 47 877-936 274-320 (893)
134 KOG3038 Histone acetyltransfer 83.8 11 0.00024 43.1 11.6 109 20-148 126-239 (264)
135 smart00258 SAND SAND domain. 83.7 0.59 1.3E-05 43.9 1.6 45 759-803 20-67 (73)
136 KOG0956 PHD finger protein AF1 83.2 0.62 1.3E-05 58.2 1.9 39 891-936 16-56 (900)
137 cd06080 MUM1_like Mutated mela 82.7 2.1 4.6E-05 40.9 4.9 51 111-161 1-53 (80)
138 COG5141 PHD zinc finger-contai 82.6 0.62 1.3E-05 56.3 1.5 32 895-932 208-239 (669)
139 cd05162 PWWP The PWWP domain, 80.4 2.9 6.2E-05 39.6 4.9 55 111-165 1-65 (87)
140 PF13831 PHD_2: PHD-finger; PD 79.6 0.59 1.3E-05 38.1 0.0 32 895-932 2-34 (36)
141 cd05834 HDGF_related The PWWP 78.0 3.6 7.7E-05 39.4 4.7 56 110-165 2-61 (83)
142 PF13832 zf-HC5HC2H_2: PHD-zin 77.3 1.7 3.6E-05 42.8 2.4 69 835-916 2-89 (110)
143 KOG1081 Transcription factor N 75.8 2.1 4.5E-05 52.7 3.2 47 829-876 85-131 (463)
144 smart00293 PWWP domain with co 75.6 4.8 0.0001 36.3 4.7 50 111-160 1-61 (63)
145 KOG1701 Focal adhesion adaptor 75.4 0.86 1.9E-05 54.6 -0.2 76 835-916 336-432 (468)
146 PF07227 DUF1423: Protein of u 74.8 1.7 3.8E-05 52.6 2.1 41 869-914 123-163 (446)
147 cd04264 DUF619-NAGS DUF619 dom 73.2 6 0.00013 39.2 5.0 48 1031-1078 14-63 (99)
148 cd05836 N_Pac_NP60 The PWWP do 73.0 5.3 0.00011 38.4 4.5 55 111-165 1-63 (86)
149 PF01233 NMT: Myristoyl-CoA:pr 72.8 12 0.00027 40.1 7.5 69 1019-1087 71-148 (162)
150 PF01342 SAND: SAND domain; I 72.6 1 2.2E-05 43.1 -0.4 42 760-803 35-76 (82)
151 PF09465 LBR_tudor: Lamin-B re 71.4 12 0.00026 33.7 5.8 40 18-60 2-43 (55)
152 TIGR03019 pepcterm_femAB FemAB 67.5 16 0.00035 42.5 7.8 82 1027-1109 197-281 (330)
153 KOG2535 RNA polymerase II elon 66.6 6.3 0.00014 46.5 4.1 51 1059-1110 497-548 (554)
154 PF14446 Prok-RING_1: Prokaryo 66.4 4 8.8E-05 36.4 2.0 37 874-917 5-41 (54)
155 PF01429 MBD: Methyl-CpG bindi 65.7 7.3 0.00016 36.6 3.7 39 555-593 11-53 (77)
156 COG5628 Predicted acetyltransf 63.7 31 0.00068 35.7 7.8 82 1030-1116 42-131 (143)
157 PLN00104 MYST -like histone ac 63.5 8.9 0.00019 47.0 4.8 55 17-79 49-111 (450)
158 PF02474 NodA: Nodulation prot 61.9 9.8 0.00021 41.3 4.2 53 1049-1103 85-137 (196)
159 COG3818 Predicted acetyltransf 61.5 19 0.00041 37.7 5.9 71 1046-1116 81-155 (167)
160 PF00567 TUDOR: Tudor domain; 61.5 21 0.00044 34.2 6.1 50 18-77 48-98 (121)
161 PF11717 Tudor-knot: RNA bindi 60.6 19 0.00042 31.7 5.2 39 111-149 1-42 (55)
162 KOG4135 Predicted phosphogluco 60.5 14 0.0003 39.3 5.0 58 1049-1107 107-168 (185)
163 PF14446 Prok-RING_1: Prokaryo 60.1 4.6 0.0001 36.1 1.2 28 834-861 6-37 (54)
164 PF13444 Acetyltransf_5: Acety 58.3 15 0.00033 35.7 4.6 53 1018-1071 24-100 (101)
165 cd04265 DUF619-NAGS-U DUF619 d 58.2 15 0.00033 36.4 4.6 48 1031-1078 15-63 (99)
166 cd05841 BS69_related The PWWP 58.1 15 0.00034 35.4 4.4 53 111-165 7-61 (83)
167 PF01853 MOZ_SAS: MOZ/SAS fami 57.4 39 0.00084 37.4 7.9 86 980-1082 26-113 (188)
168 cd05840 SPBC215_ISWI_like The 57.1 16 0.00035 35.8 4.5 52 111-162 1-65 (93)
169 cd01396 MeCP2_MBD MeCP2, MBD1, 57.1 11 0.00024 35.7 3.3 39 555-593 7-48 (77)
170 PF00567 TUDOR: Tudor domain; 56.6 14 0.00029 35.4 3.9 50 113-163 56-105 (121)
171 KOG0804 Cytoplasmic Zn-finger 54.6 5.3 0.00012 48.5 0.9 66 832-915 174-255 (493)
172 PF13771 zf-HC5HC2H: PHD-like 52.9 8 0.00017 36.6 1.6 46 876-932 38-88 (90)
173 PF15446 zf-PHD-like: PHD/FYVE 52.4 9.4 0.0002 41.2 2.2 35 894-928 14-50 (175)
174 KOG1473 Nucleosome remodeling 52.2 2.7 5.7E-05 55.5 -2.1 45 832-876 427-477 (1414)
175 PF13880 Acetyltransf_13: ESCO 52.2 10 0.00023 35.5 2.2 27 1051-1077 7-33 (70)
176 PF06003 SMN: Survival motor n 52.0 44 0.00096 38.5 7.7 51 17-77 64-116 (264)
177 PF01429 MBD: Methyl-CpG bindi 50.5 24 0.00051 33.3 4.3 43 434-476 11-57 (77)
178 PF04377 ATE_C: Arginine-tRNA- 50.0 72 0.0016 33.2 8.1 64 1024-1088 38-101 (128)
179 PLN03238 probable histone acet 49.7 32 0.0007 40.2 6.1 62 1021-1082 123-188 (290)
180 cd00122 MBD MeCP2, MBD1, MBD2, 48.6 27 0.00059 31.5 4.3 41 556-596 7-50 (62)
181 KOG0644 Uncharacterized conser 46.1 24 0.00052 46.0 4.7 39 109-147 977-1029(1113)
182 PF10497 zf-4CXXC_R1: Zinc-fin 44.9 9.6 0.00021 38.2 0.9 36 849-884 34-80 (105)
183 cd01396 MeCP2_MBD MeCP2, MBD1, 43.7 32 0.0007 32.7 4.1 41 435-475 8-51 (77)
184 PF02820 MBT: mbt repeat; Int 41.1 69 0.0015 29.7 5.8 44 27-77 2-45 (73)
185 smart00391 MBD Methyl-CpG bind 40.7 29 0.00063 32.9 3.3 39 555-593 8-50 (77)
186 PTZ00064 histone acetyltransfe 40.7 42 0.00092 41.8 5.4 62 1021-1082 352-417 (552)
187 COG2139 RPL21A Ribosomal prote 39.5 44 0.00096 33.3 4.4 55 108-162 30-95 (98)
188 PLN00104 MYST -like histone ac 39.4 32 0.0007 42.4 4.2 62 1021-1082 274-339 (450)
189 PRK14852 hypothetical protein; 38.7 74 0.0016 43.0 7.6 83 1028-1110 78-182 (989)
190 cd00122 MBD MeCP2, MBD1, MBD2, 38.7 43 0.00093 30.3 3.9 41 435-475 7-50 (62)
191 PLN03239 histone acetyltransfe 38.6 59 0.0013 39.0 6.1 62 1021-1082 181-246 (351)
192 PF13901 DUF4206: Domain of un 38.5 23 0.00049 39.2 2.6 29 833-861 152-188 (202)
193 PRK04306 50S ribosomal protein 36.5 60 0.0013 32.5 4.8 54 109-162 33-97 (98)
194 PRK01305 arginyl-tRNA-protein 36.1 1.8E+02 0.0038 33.4 9.2 61 1027-1088 146-206 (240)
195 KOG2752 Uncharacterized conser 36.1 25 0.00055 41.3 2.6 24 893-916 144-168 (345)
196 KOG2779 N-myristoyl transferas 35.7 1.2E+02 0.0026 36.6 7.8 83 1019-1101 128-225 (421)
197 KOG1829 Uncharacterized conser 35.4 17 0.00037 46.0 1.2 35 894-940 528-562 (580)
198 KOG1701 Focal adhesion adaptor 35.3 4.9 0.00011 48.5 -3.3 70 834-914 275-363 (468)
199 PF11793 FANCL_C: FANCL C-term 35.2 14 0.00031 34.2 0.4 28 834-861 3-38 (70)
200 KOG4348 Adaptor protein CMS/SE 35.2 18 0.0004 43.9 1.3 25 108-132 116-142 (627)
201 PF15057 DUF4537: Domain of un 35.1 59 0.0013 33.4 4.8 41 19-61 53-99 (124)
202 cd05837 MSH6_like The PWWP dom 34.8 54 0.0012 33.0 4.3 52 110-161 2-67 (110)
203 smart00561 MBT Present in Dros 34.5 1.2E+02 0.0026 29.9 6.6 40 109-150 26-68 (96)
204 PF07653 SH3_2: Variant SH3 do 33.0 37 0.00081 29.4 2.6 22 109-130 16-40 (55)
205 COG0143 MetG Methionyl-tRNA sy 32.8 23 0.00049 44.9 1.7 37 869-915 126-173 (558)
206 KOG0162 Myosin class I heavy c 32.5 34 0.00075 44.1 3.0 22 109-130 1068-1091(1106)
207 PF12861 zf-Apc11: Anaphase-pr 32.4 17 0.00036 35.5 0.3 28 848-876 49-78 (85)
208 PF13832 zf-HC5HC2H_2: PHD-zin 31.9 22 0.00047 35.1 1.0 29 833-861 55-86 (110)
209 KOG2747 Histone acetyltransfer 31.6 43 0.00094 40.7 3.6 52 1020-1074 229-285 (396)
210 PF05301 Mec-17: Touch recepto 31.6 42 0.00092 34.6 3.0 60 1057-1125 54-116 (120)
211 cd05838 WHSC1_related The PWWP 31.3 61 0.0013 31.8 4.0 54 112-165 2-66 (95)
212 PRK00756 acyltransferase NodA; 31.2 54 0.0012 35.7 3.8 36 1049-1085 85-120 (196)
213 KOG4628 Predicted E3 ubiquitin 31.2 32 0.00069 41.2 2.4 44 834-878 230-276 (348)
214 PF07897 DUF1675: Protein of u 30.7 17 0.00037 42.3 0.1 30 762-791 253-283 (284)
215 PLN02400 cellulose synthase 29.8 50 0.0011 44.7 4.0 46 830-876 33-85 (1085)
216 PRK10430 DNA-binding transcrip 29.7 50 0.0011 36.3 3.5 44 426-470 192-239 (239)
217 PF13901 DUF4206: Domain of un 29.6 29 0.00063 38.4 1.6 21 894-914 169-189 (202)
218 KOG2036 Predicted P-loop ATPas 28.5 46 0.00099 43.0 3.2 31 1049-1079 614-644 (1011)
219 PF13639 zf-RING_2: Ring finge 28.2 7.6 0.00017 32.2 -2.4 38 834-876 1-44 (44)
220 PF00641 zf-RanBP: Zn-finger i 26.6 27 0.00059 27.1 0.6 10 867-876 2-11 (30)
221 smart00547 ZnF_RBZ Zinc finger 26.6 42 0.0009 25.0 1.5 9 868-876 1-9 (26)
222 KOG0269 WD40 repeat-containing 26.4 27 0.00058 45.2 0.7 39 868-915 767-811 (839)
223 PRK03564 formate dehydrogenase 24.5 95 0.0021 36.8 4.7 26 831-856 185-223 (309)
224 PF11793 FANCL_C: FANCL C-term 23.9 42 0.00091 31.2 1.3 34 877-915 5-40 (70)
225 PF09953 DUF2187: Uncharacteri 23.7 2E+02 0.0043 26.4 5.4 29 111-144 4-32 (57)
226 KOG0185 20S proteasome, regula 23.6 1.4E+02 0.0031 34.2 5.5 93 974-1078 91-187 (256)
227 COG5027 SAS2 Histone acetyltra 23.5 44 0.00096 39.9 1.7 54 1020-1073 229-286 (395)
228 PF13771 zf-HC5HC2H: PHD-like 23.3 42 0.0009 31.7 1.3 29 833-861 36-67 (90)
229 PF12148 DUF3590: Protein of u 23.0 1.5E+02 0.0032 29.2 4.8 51 116-166 1-65 (85)
230 cd01397 HAT_MBD Methyl-CpG bin 22.5 1E+02 0.0022 29.3 3.6 42 435-476 7-51 (73)
231 KOG3612 PHD Zn-finger protein 22.2 67 0.0015 40.4 2.9 46 831-876 58-106 (588)
232 PF13913 zf-C2HC_2: zinc-finge 21.4 30 0.00066 26.1 -0.1 20 761-780 2-21 (25)
233 KOG1999 RNA polymerase II tran 20.9 4.1E+02 0.0088 36.1 9.4 102 19-163 405-511 (1024)
234 PRK04023 DNA polymerase II lar 20.7 77 0.0017 42.6 3.2 35 831-876 624-658 (1121)
235 KOG1734 Predicted RING-contain 20.3 39 0.00085 39.1 0.5 33 829-861 220-262 (328)
No 1
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=99.62 E-value=3.9e-16 Score=140.65 Aligned_cols=65 Identities=43% Similarity=0.756 Sum_probs=42.6
Q ss_pred CCCCCEEEEEeCCCCccceEEEEEEEEecCC-CceEEeCCccCCCCCCC-ceEEEEccccccCCccccccccCCCCcccC
Q 000791 22 LPVGERVEVRSDEDGFLGSWHAGTVIASSSD-CRTVKYDHLLTDAGDDN-LVDIVCVSSIINSSTFADVTQSHSRGHIRP 99 (1282)
Q Consensus 22 FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~-~~yVeY~dL~deDgs~~-L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP 99 (1282)
|++|++|||+++++||+||||+|+|++..++ .++|+|+++.++++.++ |.|+|+.+ +|||
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~------------------~iRP 62 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDAR------------------RIRP 62 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGG------------------GEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechh------------------eEEC
Confidence 7999999999999999999999999999998 55599999999887766 99999963 5999
Q ss_pred CCCCC
Q 000791 100 LPPPV 104 (1282)
Q Consensus 100 ~PP~~ 104 (1282)
.||+.
T Consensus 63 ~pP~~ 67 (68)
T PF05641_consen 63 CPPPE 67 (68)
T ss_dssp -----
T ss_pred cCcCC
Confidence 99974
No 2
>PRK10314 putative acyltransferase; Provisional
Probab=99.36 E-value=1.3e-12 Score=134.24 Aligned_cols=97 Identities=19% Similarity=0.092 Sum_probs=87.6
Q ss_pred cEEEEEEeCCEEEEEEEEEEecC--ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHc-CccEEEecCccchhHhhhcc
Q 000791 1025 FYTVLLERNEELVTVATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIPTVLKTWTTS 1101 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~g~--~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~l-gV~~LvLpA~~~a~~fwt~k 1101 (1282)
=+|++++.++++||+|+++..+. ..++|.+|||+++|||+|+|++||+++++.++.. +...+.|.|+..|++||+ +
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k 126 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-S 126 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-H
Confidence 46788889999999999987643 3579999999999999999999999999998875 788999999999999999 9
Q ss_pred cCeEEcCHHHHHhhcccceee
Q 000791 1102 FGFKRMTASERVQLVDYTFLN 1122 (1282)
Q Consensus 1102 fGF~~v~~~~l~~~~~h~~m~ 1122 (1282)
|||.++++.+.+++++|..|.
T Consensus 127 ~GF~~~g~~f~~~Gi~h~~M~ 147 (153)
T PRK10314 127 FGFIPVTEVYEEDGIPHIGMA 147 (153)
T ss_pred CCCEECCCccccCCCCcHhhh
Confidence 999999999999999998775
No 3
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.14 E-value=6.5e-11 Score=120.26 Aligned_cols=100 Identities=20% Similarity=0.058 Sum_probs=89.1
Q ss_pred cEEEEEEe-CCEEEEEEEEEEecCceEE--EeeeeeecCcccCChhHHHHHHHHHHHHHcC-ccEEEecCccchhHhhhc
Q 000791 1025 FYTVLLER-NEELVTVATVRIFGEKAAE--IPLVGTRFQYRRLGMCRILMNELEKRLMELG-VEKLILPAIPTVLKTWTT 1100 (1282)
Q Consensus 1025 fy~~VL~~-~~e~VsaA~lri~g~~~AE--Ip~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg-V~~LvLpA~~~a~~fwt~ 1100 (1282)
-.|+.+.. +|++|++|||-..+....+ |.||+|.+++||+|+|+.||....+.+.... =+.+.|.||.++++||.
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa- 127 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA- 127 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-
Confidence 35888888 8999999999888776655 9999999999999999999987777766655 67799999999999999
Q ss_pred ccCeEEcCHHHHHhhcccceeeeCC
Q 000791 1101 SFGFKRMTASERVQLVDYTFLNFPD 1125 (1282)
Q Consensus 1101 kfGF~~v~~~~l~~~~~h~~m~F~g 1125 (1282)
+|||.++++++++.+|+|.-|.++.
T Consensus 128 ~~GFv~~~e~yledGIpHv~M~r~~ 152 (155)
T COG2153 128 SFGFVRVGEEYLEDGIPHVGMIREV 152 (155)
T ss_pred HhCcEEcCchhhcCCCCchhhhhcc
Confidence 9999999999999999999998875
No 4
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=99.02 E-value=4.4e-10 Score=98.79 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=51.6
Q ss_pred CCCCCCEEEeec--CCCEEEEEEEEEeCCCceEEEEeCC--CCCeEEEccCCCccccccc
Q 000791 110 SLPFGLCVDVYY--NEAWWEGVIFDLEDGSAERRIFFPD--LGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 110 ~~~vGD~VDa~~--~dgWWeGvV~~v~~g~~~y~V~Fpg--egdel~f~~~dLRp~~dW~ 165 (1282)
.|++|+.|||++ +++||+|+|+++.++ ++|.|+|++ ++...+|+.++|||+++|.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~-~~~~V~~~~~~~~~~e~v~~~~LRp~~~w~ 60 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGD-GKYLVRYLTESEPLKETVDWSDLRPHPPWV 60 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCC-CEEEEEECCCCcccEEEEeHHHcccCCCCC
Confidence 589999999999 999999999999863 479999999 9999999999999999997
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.97 E-value=3.8e-09 Score=95.91 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=67.3
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCe
Q 000791 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF 1104 (1282)
-++++++.++++||++.+...++ .+.|..+||+++|||||+|+.||+.+.+.+.. ..+++.+.+.+.+||+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 36788899999999999976655 88999999999999999999999999888844 6678888899999999 9999
Q ss_pred EE
Q 000791 1105 KR 1106 (1282)
Q Consensus 1105 ~~ 1106 (1282)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 6
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.93 E-value=2.3e-10 Score=125.56 Aligned_cols=88 Identities=24% Similarity=0.597 Sum_probs=73.1
Q ss_pred ccccccCCCC---------ceeecCCCCCccccCCCCC-----CCCCCCCCccCCCC-cccCCCCCCCCccccccCCcee
Q 000791 834 YKCSVCHFGG---------ELLLCDRCPSSFHRNCVGL-----EDVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSVL 898 (1282)
Q Consensus 834 d~C~vC~dgG---------eLL~CD~Cp~afH~~CL~L-----~~vP~g~W~C~~C~-C~iCgk~~~~~~~~~~~~g~Ll 898 (1282)
..|.+|.++- .+|+|..|..++|++|+.+ ..+....|.|.+|+ |.+|+++..+ ..++
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E--------~E~~ 330 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIE--------SEHL 330 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccc--------hhee
Confidence 3478887653 3999999999999999983 24456789999998 9999998753 4589
Q ss_pred ecCccccccccccccCCCcchhccCCCCCcccCCcch
Q 000791 899 ICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE 935 (1282)
Q Consensus 899 ~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~ 935 (1282)
+||.|++.||..|.. |..+|.|.|.|--.|-
T Consensus 331 FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 331 FCDVCDRGPHTLCVG------LQDLPRGEWICDMRCR 361 (381)
T ss_pred ccccccCCCCccccc------cccccCccchhhhHHH
Confidence 999999999999987 7789999999975453
No 7
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.90 E-value=3.9e-10 Score=123.24 Aligned_cols=90 Identities=34% Similarity=0.805 Sum_probs=75.2
Q ss_pred ccccccCC----------CCceeecCCCCCccccCCCC-----CCCCCCCCCccCCCC-cccCCCCCCCCccccccCCce
Q 000791 834 YKCSVCHF----------GGELLLCDRCPSSFHRNCVG-----LEDVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSV 897 (1282)
Q Consensus 834 d~C~vC~d----------gGeLL~CD~Cp~afH~~CL~-----L~~vP~g~W~C~~C~-C~iCgk~~~~~~~~~~~~g~L 897 (1282)
.+|-.|.. +.+|+-|..|+++-|++||. +..|....|+|.+|+ |.+||-+.. ++.|
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsen--------ddql 296 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEN--------DDQL 296 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCC--------Ccee
Confidence 45777753 23699999999999999997 346677889999998 899997754 3679
Q ss_pred eecCccccccccccccCCCcchhccCCCCCcccCCcchh
Q 000791 898 LICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 898 l~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
++||.|++.||.+||.++ +.+.|+|.|-|-- |-+
T Consensus 297 lfcddcdrgyhmyclspp----m~eppegswsc~K-OG~ 330 (336)
T KOG1244|consen 297 LFCDDCDRGYHMYCLSPP----MVEPPEGSWSCHL-CLE 330 (336)
T ss_pred EeecccCCceeeEecCCC----cCCCCCCchhHHH-HHH
Confidence 999999999999999998 7889999999973 544
No 8
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.90 E-value=7.6e-09 Score=93.09 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=68.4
Q ss_pred EeCCEEEEEEEEEEecC-----ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccc---hhHhhhccc
Q 000791 1031 ERNEELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT---VLKTWTTSF 1102 (1282)
Q Consensus 1031 ~~~~e~VsaA~lri~g~-----~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~---a~~fwt~kf 1102 (1282)
+.+|++||++.+++... ..+.|..++|+++|||+|+|+.||+.+++.+++.|+..|.+....+ +..||+ ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 67999999999999976 5899999999999999999999999999999999999998877765 679999 99
Q ss_pred CeE
Q 000791 1103 GFK 1105 (1282)
Q Consensus 1103 GF~ 1105 (1282)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 9
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.82 E-value=1.7e-08 Score=96.39 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=65.5
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCe
Q 000791 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF 1104 (1282)
...+|++.+|++||.+.++ .-++|..+.|+|+|||+|+|++||+.+++.++. |++.+.+.+...|.+||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 4678899999999999986 335699999999999999999999999999988 999999999999999999 8998
No 10
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.74 E-value=2.7e-08 Score=98.50 Aligned_cols=84 Identities=17% Similarity=0.056 Sum_probs=71.7
Q ss_pred EEEEEeCCEEEEEEEEEEec-----CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCcc---chhHhh
Q 000791 1027 TVLLERNEELVTVATVRIFG-----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIP---TVLKTW 1098 (1282)
Q Consensus 1027 ~~VL~~~~e~VsaA~lri~g-----~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~---~a~~fw 1098 (1282)
.+|++.++++||++.++... ...++|..++|.++|||+|+|+.||+.+++.++..|++.+.|.... .|+.||
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY 128 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFY 128 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHH
Confidence 35677889999999987642 2356899999999999999999999999999999999999987653 799999
Q ss_pred hcccCeEEcCHHH
Q 000791 1099 TTSFGFKRMTASE 1111 (1282)
Q Consensus 1099 t~kfGF~~v~~~~ 1111 (1282)
+ ++||...+-.+
T Consensus 129 ~-~~Gf~~~~~~~ 140 (144)
T PRK10146 129 L-REGYEQSHFRF 140 (144)
T ss_pred H-HcCCchhhhhh
Confidence 9 99998876554
No 11
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.72 E-value=2.3e-08 Score=103.40 Aligned_cols=87 Identities=22% Similarity=0.393 Sum_probs=75.9
Q ss_pred cCccEEEEEEeCCEEEEEEEEE-EecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhc
Q 000791 1022 FQGFYTVLLERNEELVTVATVR-IFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTT 1100 (1282)
Q Consensus 1022 f~Gfy~~VL~~~~e~VsaA~lr-i~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~ 1100 (1282)
++.|+ |++++|.+||||.+. +.+.+++||.-|||+|+|||+|+|..|++.|+..|+.+|++++++=+. .+..|.+
T Consensus 39 i~dF~--i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~- 114 (153)
T COG1246 39 IDDFT--IIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFA- 114 (153)
T ss_pred Hhhhe--eeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHH-
Confidence 34455 348899999999999 789999999999999999999999999999999999999999998554 6667777
Q ss_pred ccCeEEcCHHHH
Q 000791 1101 SFGFKRMTASER 1112 (1282)
Q Consensus 1101 kfGF~~v~~~~l 1112 (1282)
++||+.++...+
T Consensus 115 ~~GF~~vd~~~L 126 (153)
T COG1246 115 ERGFTRVDKDEL 126 (153)
T ss_pred HcCCeECccccC
Confidence 899999987543
No 12
>PTZ00330 acetyltransferase; Provisional
Probab=98.69 E-value=7.5e-08 Score=95.74 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=72.6
Q ss_pred EEEEEEeCCEEEEEEEEEEe------cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhh
Q 000791 1026 YTVLLERNEELVTVATVRIF------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWT 1099 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~------g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt 1099 (1282)
+.++...+|++||++.+... +...++|..+.|.++|||+|+|+.||+.+++.++..|+.++++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 34555678899999998653 223578999999999999999999999999999999999999999999999999
Q ss_pred cccCeEEcCHH
Q 000791 1100 TSFGFKRMTAS 1110 (1282)
Q Consensus 1100 ~kfGF~~v~~~ 1110 (1282)
++||+.....
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 9999987743
No 13
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.66 E-value=1e-08 Score=122.73 Aligned_cols=108 Identities=28% Similarity=0.737 Sum_probs=81.2
Q ss_pred cccccCCCC-----ceeecCC--CCCccccCCCCCCCCCCCCCccCCCC-------------------------------
Q 000791 835 KCSVCHFGG-----ELLLCDR--CPSSFHRNCVGLEDVPDGDWFCPSCC------------------------------- 876 (1282)
Q Consensus 835 ~C~vC~dgG-----eLL~CD~--Cp~afH~~CL~L~~vP~g~W~C~~C~------------------------------- 876 (1282)
-|.||.|.. -|+.||+ |--+.|+.|+++.+||.|.|||..|.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 499998842 3999998 99999999999999999999999995
Q ss_pred ---------------------------------cccCCCCCCCCccccccCCceeecCc--cccccccccccCCCcchhc
Q 000791 877 ---------------------------------CSICGNSNSREEVEDVVDGSVLICHQ--CELKYHRKCLQNGATDKLK 921 (1282)
Q Consensus 877 ---------------------------------C~iCgk~~~~~~~~~~~~g~Ll~Cdq--Cer~YH~~CL~~~~~~~L~ 921 (1282)
|+||.+-... ..+..|..+.|+. |.+.||+.|.+..+...-+
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~Grp---nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE 163 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRP---NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE 163 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCc---cccccccceecccccchhhhhhhHhhhhccceec
Confidence 5666443221 1234577899986 9999999999987642111
Q ss_pred c--CCCCCcccCCcchhhHHhhhhhcC
Q 000791 922 T--HAKETWFCSKKCEEIFLGLQRLLG 946 (1282)
Q Consensus 922 e--~p~~~WfCs~~C~~I~~~Lq~llg 946 (1282)
+ +-...-||. .|+..|.+|.+--.
T Consensus 164 ~gn~~dNVKYCG-YCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 164 EGNISDNVKYCG-YCKYHFSKLKKSPA 189 (900)
T ss_pred cccccccceech-hHHHHHHHhhcCCC
Confidence 1 223346887 89999999886543
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.64 E-value=6.5e-08 Score=110.23 Aligned_cols=76 Identities=24% Similarity=0.356 Sum_probs=68.6
Q ss_pred EEEE-EeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeE
Q 000791 1027 TVLL-ERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFK 1105 (1282)
Q Consensus 1027 ~~VL-~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~ 1105 (1282)
++.+ +.+|++||+|++.. .+|..|||+++|||+|+|++||+++|+.+++.|++++.|.+..++.+||+ ++||+
T Consensus 7 ~~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~ 80 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFK 80 (297)
T ss_pred EEEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCE
Confidence 4444 46699999998842 37999999999999999999999999999999999999999999999999 99999
Q ss_pred EcC
Q 000791 1106 RMT 1108 (1282)
Q Consensus 1106 ~v~ 1108 (1282)
.++
T Consensus 81 ~~~ 83 (297)
T cd02169 81 ELA 83 (297)
T ss_pred Eec
Confidence 888
No 15
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.61 E-value=2e-07 Score=93.73 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=70.0
Q ss_pred EEEEEEe--CCEEEEEEEEEEe------cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHh
Q 000791 1026 YTVLLER--NEELVTVATVRIF------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKT 1097 (1282)
Q Consensus 1026 y~~VL~~--~~e~VsaA~lri~------g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~f 1097 (1282)
+.++.+. ++++||++.+.+. ....+.|..++|.++|||||+|+.||+++++.|+.+|+++|.|........|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4444454 6899999988532 1355678889999999999999999999999999999999999988888999
Q ss_pred hhcccCeEEcCH
Q 000791 1098 WTTSFGFKRMTA 1109 (1282)
Q Consensus 1098 wt~kfGF~~v~~ 1109 (1282)
|+ ++||...+-
T Consensus 134 y~-k~GF~~~g~ 144 (150)
T PLN02706 134 YE-KCGYVRKEI 144 (150)
T ss_pred HH-HCcCEEehh
Confidence 99 999998653
No 16
>PRK03624 putative acetyltransferase; Provisional
Probab=98.60 E-value=1.3e-07 Score=91.76 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=70.1
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCcc---chhHhhhcc
Q 000791 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIP---TVLKTWTTS 1101 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~---~a~~fwt~k 1101 (1282)
.+.+++..++++||.+.+... ...+.+..++|.++|||+|+|+.|++.+++.++.+|++++.+.... .++.||+ +
T Consensus 45 ~~~~v~~~~~~~vG~~~~~~~-~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k 122 (140)
T PRK03624 45 SLFLVAEVGGEVVGTVMGGYD-GHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-A 122 (140)
T ss_pred ceEEEEEcCCcEEEEEEeecc-CCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-H
Confidence 355677888999999987644 3446788999999999999999999999999999999998876553 4889998 9
Q ss_pred cCeEEcCH
Q 000791 1102 FGFKRMTA 1109 (1282)
Q Consensus 1102 fGF~~v~~ 1109 (1282)
+||+..+.
T Consensus 123 ~GF~~~~~ 130 (140)
T PRK03624 123 LGYEEQDR 130 (140)
T ss_pred cCCccccE
Confidence 99997664
No 17
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.59 E-value=3.4e-07 Score=88.17 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=69.9
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEec---CccchhHhhhccc
Q 000791 1026 YTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILP---AIPTVLKTWTTSF 1102 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLp---A~~~a~~fwt~kf 1102 (1282)
+.++.+.++++||.+.++... ....|-.++|.++|||||+|+.|++++++.+...|..++++. +...+..||+ ++
T Consensus 32 ~~~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~ 109 (131)
T TIGR01575 32 CYLLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KL 109 (131)
T ss_pred eEEEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-Hc
Confidence 345566789999999987644 446889999999999999999999999999999999999984 4556899999 99
Q ss_pred CeEEcCH
Q 000791 1103 GFKRMTA 1109 (1282)
Q Consensus 1103 GF~~v~~ 1109 (1282)
||+..+.
T Consensus 110 Gf~~~~~ 116 (131)
T TIGR01575 110 GFNEIAI 116 (131)
T ss_pred CCCcccc
Confidence 9998765
No 18
>PRK07757 acetyltransferase; Provisional
Probab=98.57 E-value=2.2e-07 Score=93.61 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=72.0
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEc
Q 000791 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v 1107 (1282)
+++..+|++||.+.+.+.+.+.++|-.|+|.++|||+|+|+.||.++++.+.+.|+.++.+- ..+..||+ |+||+..
T Consensus 44 ~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~--~~~~~~Y~-k~GF~~~ 120 (152)
T PRK07757 44 YVAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFAL--TYQPEFFE-KLGFREV 120 (152)
T ss_pred EEEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEE--eCcHHHHH-HCCCEEc
Confidence 34567899999999998888889999999999999999999999999999999999998653 34678999 9999999
Q ss_pred CHHHH
Q 000791 1108 TASER 1112 (1282)
Q Consensus 1108 ~~~~l 1112 (1282)
+...+
T Consensus 121 ~~~~~ 125 (152)
T PRK07757 121 DKEAL 125 (152)
T ss_pred ccccC
Confidence 87533
No 19
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.56 E-value=3.7e-07 Score=88.92 Aligned_cols=111 Identities=26% Similarity=0.267 Sum_probs=79.7
Q ss_pred hhhhHHHhhhcccccccCCCchhhHHHHHhhccCCCCCcCcCccEEEEEEeCCEEEEEEEEEEe-----cC--ceEEEee
Q 000791 982 LNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIF-----GE--KAAEIPL 1054 (1282)
Q Consensus 982 La~AL~Vm~EcF~Pi~D~rTg~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~~~e~VsaA~lri~-----g~--~~AEIp~ 1054 (1282)
+..-.+++.++|.+-..+. ..+.+... . +..-.+++.+++|++||.+.+... |. .++.|--
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~----~--~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~ 77 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRN----L--YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGD 77 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHH----H--HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhc----c--cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence 4445566778886655443 11222111 0 111257888899999999887554 43 5799999
Q ss_pred eeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEc
Q 000791 1055 VGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1055 VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v 1107 (1282)
|||.++|||+|+++.||+++++.+++.|+..++|-+ ...+||+ +|||+.+
T Consensus 78 v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 78 VAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp EEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 999999999999999999999999999999999866 5579999 9999863
No 20
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.55 E-value=4.9e-07 Score=95.68 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=70.7
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc---cchhHhhhcccCe
Q 000791 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWTTSFGF 1104 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~---~~a~~fwt~kfGF 1104 (1282)
++...+|++||.+.+.......++|-.+++.++|||+|+|+.|++++++.++.+|+.+|.+... ..|+.||+ |+||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCC
Confidence 3445688999999998776667899999999999999999999999999999999999998743 35899999 9999
Q ss_pred EEcCH
Q 000791 1105 KRMTA 1109 (1282)
Q Consensus 1105 ~~v~~ 1109 (1282)
+..+.
T Consensus 181 ~~~~~ 185 (191)
T TIGR02382 181 NIEST 185 (191)
T ss_pred ccccc
Confidence 87653
No 21
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.53 E-value=7.1e-07 Score=94.48 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=72.3
Q ss_pred ccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc---cchhHhhhc
Q 000791 1024 GFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWTT 1100 (1282)
Q Consensus 1024 Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~---~~a~~fwt~ 1100 (1282)
.++.++...+|++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+++.|++++.+... ..+..||+
T Consensus 101 ~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye- 179 (194)
T PRK10975 101 HQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI- 179 (194)
T ss_pred CcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-
Confidence 34444445678999999998777777899999999999999999999999999999999999987644 45899999
Q ss_pred ccCeEEcCH
Q 000791 1101 SFGFKRMTA 1109 (1282)
Q Consensus 1101 kfGF~~v~~ 1109 (1282)
++||+..+.
T Consensus 180 k~Gf~~~~~ 188 (194)
T PRK10975 180 RSGANIEST 188 (194)
T ss_pred HCCCeEeEE
Confidence 999998654
No 22
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.53 E-value=3.1e-07 Score=96.05 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=70.7
Q ss_pred EEEE-eCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEE
Q 000791 1028 VLLE-RNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1028 ~VL~-~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~ 1106 (1282)
++++ .++++||.+.+.....+.++|..++|+++|||+|+|+.||+++++.+++.|++++.+.. .+..||+ |+||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~--~~~~fY~-k~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLT--FEVEFFA-RHGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEe--ccHHHHH-HCCCEE
Confidence 3556 88999999998877778899999999999999999999999999999999999998743 4589999 999999
Q ss_pred cCHH
Q 000791 1107 MTAS 1110 (1282)
Q Consensus 1107 v~~~ 1110 (1282)
++..
T Consensus 125 ~~~~ 128 (169)
T PRK07922 125 IDGT 128 (169)
T ss_pred Cccc
Confidence 8654
No 23
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.50 E-value=5e-07 Score=90.57 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=71.6
Q ss_pred ccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEec---CccchhHhhhc
Q 000791 1024 GFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILP---AIPTVLKTWTT 1100 (1282)
Q Consensus 1024 Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLp---A~~~a~~fwt~ 1100 (1282)
+|+.++++.++++||.+.++..... +++-.++|.++|||+|+|+.||+.+++.++..|+..+.+. +-..+..||+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~- 116 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE- 116 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-
Confidence 4566667788999999998766544 5788899999999999999999999999999999998875 3456999999
Q ss_pred ccCeEEcCH
Q 000791 1101 SFGFKRMTA 1109 (1282)
Q Consensus 1101 kfGF~~v~~ 1109 (1282)
++||+..+.
T Consensus 117 k~Gf~~~~~ 125 (146)
T PRK09491 117 SLGFNEVTI 125 (146)
T ss_pred HcCCEEeee
Confidence 999998764
No 24
>PLN02825 amino-acid N-acetyltransferase
Probab=98.47 E-value=4.3e-07 Score=110.22 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=73.8
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEE
Q 000791 1028 VLLERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g-~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~ 1106 (1282)
+|++.+|++||+|.+..+. .+.+||-.+||+++|||+|+|++||+.+|+.++++|+++|++-. .++..||+ ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEE
Confidence 4678999999999987765 46899999999999999999999999999999999999999865 67899999 899999
Q ss_pred cCHHHH
Q 000791 1107 MTASER 1112 (1282)
Q Consensus 1107 v~~~~l 1112 (1282)
.+.+.+
T Consensus 488 ~~~~~l 493 (515)
T PLN02825 488 CSIESL 493 (515)
T ss_pred eChhhC
Confidence 776543
No 25
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.46 E-value=5.1e-07 Score=79.49 Aligned_cols=58 Identities=34% Similarity=0.479 Sum_probs=48.1
Q ss_pred CCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCccCCCCCCCceEEEEccccccCCccccccccCCCCccc
Q 000791 20 RKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIR 98 (1282)
Q Consensus 20 ~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~~y-VeY~dL~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IR 98 (1282)
+.|++|++|||+..+ .|+||+|+|+++.+..+| |.|.+ ++..+.|.++.+ .||
T Consensus 1 ~~~~~G~~Ve~~~~~---~~~W~~a~V~~~~~~~~~~V~~~~-----~~~~~~e~v~~~------------------~LR 54 (61)
T smart00743 1 SDFKKGDRVEVFSKE---EDSWWEAVVTKVLGDGKYLVRYLT-----ESEPLKETVDWS------------------DLR 54 (61)
T ss_pred CCcCCCCEEEEEECC---CCEEEEEEEEEECCCCEEEEEECC-----CCcccEEEEeHH------------------Hcc
Confidence 469999999999876 799999999999986666 99987 233578888864 599
Q ss_pred CCCCC
Q 000791 99 PLPPP 103 (1282)
Q Consensus 99 P~PP~ 103 (1282)
|.||.
T Consensus 55 p~~~w 59 (61)
T smart00743 55 PHPPW 59 (61)
T ss_pred cCCCC
Confidence 99875
No 26
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.44 E-value=6.1e-07 Score=103.81 Aligned_cols=82 Identities=24% Similarity=0.294 Sum_probs=74.1
Q ss_pred CccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhccc
Q 000791 1023 QGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSF 1102 (1282)
Q Consensus 1023 ~Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kf 1102 (1282)
.--|+++++.+|++||+|++ .|. .|..|||+++|||+|+|+.||.++++.+++.|+..++|-+.+.+..||+ ++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-kl 102 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YC 102 (332)
T ss_pred CCCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-Hc
Confidence 33578888999999999997 332 4889999999999999999999999999999999999999999999999 99
Q ss_pred CeEEcCHH
Q 000791 1103 GFKRMTAS 1110 (1282)
Q Consensus 1103 GF~~v~~~ 1110 (1282)
||..+...
T Consensus 103 GF~~i~~~ 110 (332)
T TIGR00124 103 GFKTLAEA 110 (332)
T ss_pred CCEEeeee
Confidence 99998865
No 27
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.42 E-value=6.8e-07 Score=106.42 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=72.9
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEE
Q 000791 1028 VLLERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g-~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~ 1106 (1282)
+|++.++++||++.+..+. ...++|-.++|.++|||+|+|+.||+.+|+.+++.|+++|++-+ ..+..||+ ++||+.
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~-~~a~~fY~-k~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLT-TRTGHWFR-ERGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee-cchHHHHH-HCCCEE
Confidence 3567899999999998874 46799999999999999999999999999999999999987654 45789999 999999
Q ss_pred cCHHHH
Q 000791 1107 MTASER 1112 (1282)
Q Consensus 1107 v~~~~l 1112 (1282)
++..++
T Consensus 403 ~g~~~l 408 (429)
T TIGR01890 403 ASVDEL 408 (429)
T ss_pred CChhhC
Confidence 987543
No 28
>PHA00673 acetyltransferase domain containing protein
Probab=98.42 E-value=1.6e-06 Score=90.34 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=76.2
Q ss_pred EEEEEEeCCEEEEEEEEEEe------cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccc--hhHh
Q 000791 1026 YTVLLERNEELVTVATVRIF------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT--VLKT 1097 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~------g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~--a~~f 1097 (1282)
..+|.+.+|++||++.+.+. +...+.|..|.|.+++||||+|+.||+.+|+.++..|+..|.++|.++ .+.|
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 45567789999999998766 235678999999999999999999999999999999999999999987 9999
Q ss_pred hhcccCeEEcCHHHHH
Q 000791 1098 WTTSFGFKRMTASERV 1113 (1282)
Q Consensus 1098 wt~kfGF~~v~~~~l~ 1113 (1282)
|. +.|++.....+-.
T Consensus 136 y~-~~g~~~~~~~~~~ 150 (154)
T PHA00673 136 LP-AAGYRETNRTFYR 150 (154)
T ss_pred HH-hCCchhhchhhhh
Confidence 99 9999887766543
No 29
>PRK13688 hypothetical protein; Provisional
Probab=98.41 E-value=8.5e-07 Score=92.45 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=62.8
Q ss_pred EEEEEEeCCEEEEEEEEEEe----------cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchh
Q 000791 1026 YTVLLERNEELVTVATVRIF----------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVL 1095 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~----------g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~ 1095 (1282)
.+++++.++++||++.+... ..+.++|-+++|.++|||||+|++||+.+++ .++. +.+.|+..|.
T Consensus 46 ~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~ 120 (156)
T PRK13688 46 PFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSK 120 (156)
T ss_pred CEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchH
Confidence 44567789999999887543 2466899999999999999999999986544 4554 4556778899
Q ss_pred HhhhcccCeEEcCHH
Q 000791 1096 KTWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1096 ~fwt~kfGF~~v~~~ 1110 (1282)
.||+ ++||+.++..
T Consensus 121 ~FY~-k~GF~~~~~~ 134 (156)
T PRK13688 121 DFWL-KLGFTPVEYK 134 (156)
T ss_pred HHHH-hCCCEEeEEe
Confidence 9999 9999988754
No 30
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.37 E-value=1.1e-06 Score=98.29 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=71.9
Q ss_pred cEEEEEEeCCEEEEEEEEEEe-cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccc---hhHhhhc
Q 000791 1025 FYTVLLERNEELVTVATVRIF-GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT---VLKTWTT 1100 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~-g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~---a~~fwt~ 1100 (1282)
.+.++++.+|++||++.+.+. +...++|-.++|.|+|||+|+|+.||+.+++.++..|++++.+.+... +..+|+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~- 236 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA- 236 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-
Confidence 445567789999999997543 346789999999999999999999999999999999999998877655 577898
Q ss_pred ccCeEEcCH
Q 000791 1101 SFGFKRMTA 1109 (1282)
Q Consensus 1101 kfGF~~v~~ 1109 (1282)
++||+..+.
T Consensus 237 k~GF~~~G~ 245 (266)
T TIGR03827 237 RLGYAYGGT 245 (266)
T ss_pred HcCCccccE
Confidence 999997665
No 31
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.37 E-value=9e-07 Score=109.88 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=73.0
Q ss_pred EEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEc
Q 000791 1028 VLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v 1107 (1282)
+|++.+|++||.+.+...+.+.++|..++|.++|||||+|+.||+.+++.++..|++.+.+-. .+..||+ |+||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHH-HCCCEEC
Confidence 567889999999999887777899999999999999999999999999999999999998854 4679999 9999998
Q ss_pred CHHH
Q 000791 1108 TASE 1111 (1282)
Q Consensus 1108 ~~~~ 1111 (1282)
+..+
T Consensus 583 ~~~~ 586 (614)
T PRK12308 583 SKSL 586 (614)
T ss_pred Cccc
Confidence 8653
No 32
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.36 E-value=1.3e-06 Score=104.41 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=72.4
Q ss_pred EEEEeCCEEEEEEEEEEec-CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEE
Q 000791 1028 VLLERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g-~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~ 1106 (1282)
++++.++++||++.+..+. ...++|-.++|.++|||+|+|++||+++++.+++.|+..+.+-+ ..|..||+ ++||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 4567899999999887654 36789999999999999999999999999999999999998755 56899999 999999
Q ss_pred cCHHHH
Q 000791 1107 MTASER 1112 (1282)
Q Consensus 1107 v~~~~l 1112 (1282)
++..++
T Consensus 415 ~g~~~~ 420 (441)
T PRK05279 415 VDVDDL 420 (441)
T ss_pred CChhhC
Confidence 987543
No 33
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.30 E-value=2e-07 Score=112.47 Aligned_cols=89 Identities=33% Similarity=0.878 Sum_probs=72.6
Q ss_pred CcccccccCCCC-----ceeecCCCCCccccCCCC--CC-CCCCCCCccCCCC-cccCCCCCCCCccccccCCceeecCc
Q 000791 832 NDYKCSVCHFGG-----ELLLCDRCPSSFHRNCVG--LE-DVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSVLICHQ 902 (1282)
Q Consensus 832 ndd~C~vC~dgG-----eLL~CD~Cp~afH~~CL~--L~-~vP~g~W~C~~C~-C~iCgk~~~~~~~~~~~~g~Ll~Cdq 902 (1282)
...+|.+|+..| .|+.|..|...||.+|+. +. .+-.+-|.|+.|+ |..||.... +..+++|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD--------~~kf~~Ck~ 88 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD--------PKKFLLCKR 88 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC--------ccccccccc
Confidence 345788998754 499999999999999998 22 2233459999998 999985432 467899999
Q ss_pred cccccccccccCCCcchhccCCCCCcccCC
Q 000791 903 CELKYHRKCLQNGATDKLKTHAKETWFCSK 932 (1282)
Q Consensus 903 Cer~YH~~CL~~~~~~~L~e~p~~~WfCs~ 932 (1282)
|+-.||.+|..+. +..++.+.|+|.+
T Consensus 89 cDvsyh~yc~~P~----~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 89 CDVSYHCYCQKPP----NDKVPSGPWLCKK 114 (694)
T ss_pred ccccccccccCCc----cccccCcccccHH
Confidence 9999999999987 7889999999975
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=98.27 E-value=2e-06 Score=86.99 Aligned_cols=74 Identities=22% Similarity=0.216 Sum_probs=62.6
Q ss_pred EEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEE
Q 000791 1027 TVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1027 ~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~ 1106 (1282)
.+|+..+|++||.+.+.. ..+..+.|.++|||||+|++||+.+++.+.. +.+.+...|+.||+ ++||..
T Consensus 55 ~~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~ 123 (147)
T PRK09831 55 VRVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQT 123 (147)
T ss_pred eEEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEE
Confidence 345678899999988732 4678899999999999999999999998876 55667778999999 999999
Q ss_pred cCHHH
Q 000791 1107 MTASE 1111 (1282)
Q Consensus 1107 v~~~~ 1111 (1282)
.+...
T Consensus 124 ~g~~~ 128 (147)
T PRK09831 124 VKQQR 128 (147)
T ss_pred eeccc
Confidence 98854
No 35
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.26 E-value=3.9e-06 Score=84.51 Aligned_cols=84 Identities=15% Similarity=0.298 Sum_probs=68.7
Q ss_pred cEEEEEEeCCEEEEEEEEEEec----CceEEEeeeeeecCcccCChhHHHHHHHHHHHHH-cCccEEEecCc---cchhH
Q 000791 1025 FYTVLLERNEELVTVATVRIFG----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILPAI---PTVLK 1096 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~g----~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~-lgV~~LvLpA~---~~a~~ 1096 (1282)
++.++...+|++||++.+.... ...+++. +++.++|||+|+|+.||+.+++.+.. +|.+++.+... ..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4566777889999999987542 2345654 89999999999999999999999988 79888776554 46899
Q ss_pred hhhcccCeEEcCHH
Q 000791 1097 TWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1097 fwt~kfGF~~v~~~ 1110 (1282)
||+ ++||+..+..
T Consensus 130 ~y~-k~GF~~~g~~ 142 (162)
T PRK10140 130 VYK-KYGFEIEGTG 142 (162)
T ss_pred HHH-HCCCEEEeec
Confidence 999 9999988764
No 36
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.22 E-value=7.8e-06 Score=91.31 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=66.8
Q ss_pred cEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc-cchhHhhhcccC
Q 000791 1025 FYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI-PTVLKTWTTSFG 1103 (1282)
Q Consensus 1025 fy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~-~~a~~fwt~kfG 1103 (1282)
..++|.+.+|++||.+.+.......+++-.++|+++|||+|+|+.||+.+++.+. +--.|.+... ..|+.||+ ++|
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~G 122 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLG 122 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCC
Confidence 3567778899999999988775555789999999999999999999999999865 2234555544 46999999 999
Q ss_pred eEEcCH
Q 000791 1104 FKRMTA 1109 (1282)
Q Consensus 1104 F~~v~~ 1109 (1282)
|+....
T Consensus 123 f~~~~~ 128 (292)
T TIGR03448 123 LVPTRE 128 (292)
T ss_pred CEEccE
Confidence 988765
No 37
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.21 E-value=4.4e-07 Score=105.95 Aligned_cols=91 Identities=27% Similarity=0.760 Sum_probs=69.0
Q ss_pred ccCCCcccccccCCCC-----ceeecCCCCCccccCCCCCCCCCCCCCccCCCC--------cccCCCCCCC-----Cc-
Q 000791 828 LQGENDYKCSVCHFGG-----ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC--------CSICGNSNSR-----EE- 888 (1282)
Q Consensus 828 ~~~~ndd~C~vC~dgG-----eLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~--------C~iCgk~~~~-----~~- 888 (1282)
.+++-|+.|.+|.... -++.||+|+-+.|..|.++..+|+|.|+|..|. |.+|-.++.. ++
T Consensus 188 ~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgr 267 (669)
T COG5141 188 PSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGR 267 (669)
T ss_pred CchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCc
Confidence 3445678899997643 399999999999999999999999999999996 7777554321 00
Q ss_pred -----------------------ccc-----------------ccCCceeecCc--cccccccccccCCCcc
Q 000791 889 -----------------------VED-----------------VVDGSVLICHQ--CELKYHRKCLQNGATD 918 (1282)
Q Consensus 889 -----------------------~~~-----------------~~~g~Ll~Cdq--Cer~YH~~CL~~~~~~ 918 (1282)
.++ -..|+.++|.+ |-++||+.|.+..+--
T Consensus 268 W~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f 339 (669)
T COG5141 268 WGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYF 339 (669)
T ss_pred hHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchh
Confidence 000 02577888987 9999999999877643
No 38
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.19 E-value=4.9e-06 Score=84.52 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=74.0
Q ss_pred cEEEEEEeC--CEEEEEEEEEEe-----c-CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhH
Q 000791 1025 FYTVLLERN--EELVTVATVRIF-----G-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLK 1096 (1282)
Q Consensus 1025 fy~~VL~~~--~e~VsaA~lri~-----g-~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~ 1096 (1282)
||.+|+++- +++||+|+|.|- | ..-.+|.=|+|.+.||||++|+.|++.+-.+++++|+-++.|.-.++.++
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 677777754 699999999653 3 23468999999999999999999999999999999999999999999999
Q ss_pred hhhcccCeEEcC
Q 000791 1097 TWTTSFGFKRMT 1108 (1282)
Q Consensus 1097 fwt~kfGF~~v~ 1108 (1282)
||+ ||||+..+
T Consensus 133 FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 133 FYE-KCGYSNAG 143 (150)
T ss_pred HHH-HcCccccc
Confidence 999 99998766
No 39
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.12 E-value=1e-05 Score=84.44 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=63.8
Q ss_pred EEEEEEEEEecC---ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCcc---chhHhhhcccCeEEcCH
Q 000791 1036 LVTVATVRIFGE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIP---TVLKTWTTSFGFKRMTA 1109 (1282)
Q Consensus 1036 ~VsaA~lri~g~---~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~---~a~~fwt~kfGF~~v~~ 1109 (1282)
.||+.-...... .-++|-.+||+++|||||+|++|+..+.+.+++.|+..++|..-. .|..+|+ +|||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~-sLGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE-SLGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH-hcCceEecc
Confidence 576665544433 348999999999999999999999999999999999999998775 4999999 999999776
Q ss_pred HH
Q 000791 1110 SE 1111 (1282)
Q Consensus 1110 ~~ 1111 (1282)
.+
T Consensus 147 ~~ 148 (165)
T KOG3139|consen 147 LF 148 (165)
T ss_pred ee
Confidence 54
No 40
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.11 E-value=9.1e-06 Score=83.86 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=65.2
Q ss_pred EEEEEE-eCCEEEEEEEEEE--ecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc---cchhHhhh
Q 000791 1026 YTVLLE-RNEELVTVATVRI--FGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWT 1099 (1282)
Q Consensus 1026 y~~VL~-~~~e~VsaA~lri--~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~---~~a~~fwt 1099 (1282)
..++.+ .+|++||.+.+.. ...+.+.+-.+||+++|||||+|+.|++.+++.++..++.++.+-.. ..|+.||+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 4679999876533 33456889999999999999999999999999999999988876543 45889999
Q ss_pred cccCeEEc
Q 000791 1100 TSFGFKRM 1107 (1282)
Q Consensus 1100 ~kfGF~~v 1107 (1282)
|+||+-.
T Consensus 120 -k~G~~~~ 126 (157)
T TIGR02406 120 -ALARRRG 126 (157)
T ss_pred -HhCcccC
Confidence 8998663
No 41
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.10 E-value=2e-05 Score=79.34 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=66.9
Q ss_pred EEEEEEe-CCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHH-HHcCccEEEecCc---cchhHhh
Q 000791 1026 YTVLLER-NEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRL-MELGVEKLILPAI---PTVLKTW 1098 (1282)
Q Consensus 1026 y~~VL~~-~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l-~~lgV~~LvLpA~---~~a~~fw 1098 (1282)
+.+++.. +|++||.+.++... ...+++- +-+.++||++|+|+.|+..+++.| ..+|+++|.+... ..|+.||
T Consensus 51 ~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~ 129 (155)
T PF13420_consen 51 RLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFY 129 (155)
T ss_dssp EEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHH
T ss_pred cEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHH
Confidence 3444454 99999999999765 4677887 555599999999999999999999 9999999986444 3499999
Q ss_pred hcccCeEEcCH
Q 000791 1099 TTSFGFKRMTA 1109 (1282)
Q Consensus 1099 t~kfGF~~v~~ 1109 (1282)
+ ++||+..+.
T Consensus 130 ~-~~GF~~~g~ 139 (155)
T PF13420_consen 130 K-KLGFEEEGE 139 (155)
T ss_dssp H-HTTEEEEEE
T ss_pred H-hCCCEEEEE
Confidence 9 999998765
No 42
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=81.30 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=63.4
Q ss_pred EEEEEEEEEEecC-----ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCc-cEEEecCccc---hhHhhhcccCeE
Q 000791 1035 ELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGV-EKLILPAIPT---VLKTWTTSFGFK 1105 (1282)
Q Consensus 1035 e~VsaA~lri~g~-----~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV-~~LvLpA~~~---a~~fwt~kfGF~ 1105 (1282)
+++|....+.... ..++|-.|||+|+|||+|+|++|++.+++.+...+. ..++|-...+ |+.||+ ++||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 4888888764433 278999999999999999999999999999999986 7887776654 999999 89999
Q ss_pred EcCHH
Q 000791 1106 RMTAS 1110 (1282)
Q Consensus 1106 ~v~~~ 1110 (1282)
.+...
T Consensus 151 ~~~~~ 155 (177)
T COG0456 151 VVKIR 155 (177)
T ss_pred EEeee
Confidence 87654
No 43
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.04 E-value=1.6e-05 Score=88.90 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=64.4
Q ss_pred CCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc---cchhHhhhcccCeEEc
Q 000791 1033 NEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI---PTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1033 ~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~---~~a~~fwt~kfGF~~v 1107 (1282)
+|++||.+.++... ...++|-.++|+++|||||+|+.||..+++.++..|+..+.+... ..|..||+ ++||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEc
Confidence 68999987666554 346788889999999999999999999999999999998877554 35999999 9999886
Q ss_pred CH
Q 000791 1108 TA 1109 (1282)
Q Consensus 1108 ~~ 1109 (1282)
+.
T Consensus 287 ~~ 288 (292)
T TIGR03448 287 EV 288 (292)
T ss_pred cc
Confidence 53
No 44
>PHA01807 hypothetical protein
Probab=98.00 E-value=1.4e-05 Score=83.23 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=65.4
Q ss_pred EEEEEEeCCEEEEEEEEEEecC----ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccc---hhHhh
Q 000791 1026 YTVLLERNEELVTVATVRIFGE----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT---VLKTW 1098 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g~----~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~---a~~fw 1098 (1282)
+.++++.+|++||.+.+..... .+.+|..|.|.++|||+|+|+.||+++++.++..|+..|++..... |+.||
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 4466788999999999854432 3344556799999999999999999999999999999998877654 88999
Q ss_pred hcccCeEEcCHH
Q 000791 1099 TTSFGFKRMTAS 1110 (1282)
Q Consensus 1099 t~kfGF~~v~~~ 1110 (1282)
+ .|++.+.+
T Consensus 134 ~---~~~~~~~~ 142 (153)
T PHA01807 134 R---RVKPYGQE 142 (153)
T ss_pred H---hcCccCCc
Confidence 9 35555543
No 45
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.98 E-value=2.2e-05 Score=96.51 Aligned_cols=85 Identities=13% Similarity=0.188 Sum_probs=68.2
Q ss_pred ccEEEEEEe--CCEEEEEEEEEEe------cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEec---Ccc
Q 000791 1024 GFYTVLLER--NEELVTVATVRIF------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILP---AIP 1092 (1282)
Q Consensus 1024 Gfy~~VL~~--~~e~VsaA~lri~------g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLp---A~~ 1092 (1282)
+++.+|.+. +|++||++....+ ....++|-.|+|+++|||||+|++||+.+++.++..|+.++.|. ...
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 445556654 6899999875322 12347899999999999999999999999999999999998654 346
Q ss_pred chhHhhhcccCeEEcCH
Q 000791 1093 TVLKTWTTSFGFKRMTA 1109 (1282)
Q Consensus 1093 ~a~~fwt~kfGF~~v~~ 1109 (1282)
.|+.||+ +|||+.++.
T Consensus 202 ~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHH-HCCCEEeeE
Confidence 7999999 999987653
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.97 E-value=2.1e-06 Score=104.56 Aligned_cols=117 Identities=19% Similarity=0.415 Sum_probs=71.2
Q ss_pred hhcCcccCCCeEEeeecCCCcccccccccCCceEeCCCCCeeeccceeeccCCCccCCCceEEccCCcchhhhhhhhhhc
Q 000791 730 IDNNIILPRAKVTYCSRKKRRPKAEGRITRDGIKCKCCGKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQLQVLKN 809 (1282)
Q Consensus 730 Id~gvvl~~~kV~Y~~~k~~~~lleG~It~dGI~C~CC~k~fS~S~FE~HAG~~~~~P~~nI~L~dGkSL~~C~ie~~~~ 809 (1282)
+.|+|+++..|+.-|.+-.+ .|+.|+..|.-...-...+.. .-+..+-++...+.++ +
T Consensus 142 k~c~H~FC~~Ci~sWsR~aq-------------TCPiDR~EF~~v~V~eS~~~~--~~vR~lP~EEs~~~~e----~--- 199 (1134)
T KOG0825|consen 142 KHTAHYFCEECVGSWSRCAQ-------------TCPVDRGEFGEVKVLESTGIE--ANVRCLPSEESENILE----K--- 199 (1134)
T ss_pred cccccccHHHHhhhhhhhcc-------------cCchhhhhhheeeeecccccc--ceeEecchhhhhhhhh----h---
Confidence 45889999999988877555 799999988654433322210 1011111111111100 0
Q ss_pred ccccCCCCCCCccccCCcccCCCcccccccCCCCc---eeecCCCCCc-cccCCCC--CCCCCCCCCccCCCC
Q 000791 810 GNIRNFTGEPHNRLKGNLLQGENDYKCSVCHFGGE---LLLCDRCPSS-FHRNCVG--LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 810 ~~~~~~~~e~~sRlk~~~~~~~ndd~C~vC~dgGe---LL~CD~Cp~a-fH~~CL~--L~~vP~g~W~C~~C~ 876 (1282)
.-....+.+ ........-|.+|..... ||+||.|+.+ ||.+||+ +.++|.+.|||+.|.
T Consensus 200 --~~d~~~d~~------~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 200 --GGDEKQDQI------SGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred --ccccccccc------cCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 000000111 112234456999987543 9999999999 9999998 678999999999996
No 47
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.96 E-value=2.2e-06 Score=94.97 Aligned_cols=95 Identities=25% Similarity=0.534 Sum_probs=63.6
Q ss_pred eEEeeecCCCcccccccccCCceEeCCCCCeeeccceeeccCCC-ccCCCceEEccCCcchhhhhhhhhhcccccCCCCC
Q 000791 740 KVTYCSRKKRRPKAEGRITRDGIKCKCCGKVYTLSGFEDHAGST-YCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGE 818 (1282)
Q Consensus 740 kV~Y~~~k~~~~lleG~It~dGI~C~CC~k~fS~S~FE~HAG~~-~~~P~~nI~L~dGkSL~~C~ie~~~~~~~~~~~~e 818 (1282)
+-++|..+.+ .++|+ ..+.|+|.-|...+||++.+..--.. .-+-| .+.|.
T Consensus 261 ~~~~~~~~~~--~~~~r-~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY----------~W~C~--------------- 312 (381)
T KOG1512|consen 261 RKHFWDIQTN--IIQSR-RNSWIVCKPCATRPHPYCVAMIPELVGQYKTY----------FWKCS--------------- 312 (381)
T ss_pred hhhhhcchhh--hhhhh-hccceeecccccCCCCcchhcCHHHHhHHhhc----------chhhc---------------
Confidence 3445544332 23332 45679999999999999987533210 00000 01111
Q ss_pred CCccccCCcccCCCcccccccCCC---CceeecCCCCCccccCCCCCCCCCCCCCccC-CC
Q 000791 819 PHNRLKGNLLQGENDYKCSVCHFG---GELLLCDRCPSSFHRNCVGLEDVPDGDWFCP-SC 875 (1282)
Q Consensus 819 ~~sRlk~~~~~~~ndd~C~vC~dg---GeLL~CD~Cp~afH~~CL~L~~vP~g~W~C~-~C 875 (1282)
.-..|.+|+.+ .++++||.|+++||.+|++|..+|.|.|.|. .|
T Consensus 313 -------------~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 313 -------------SCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRC 360 (381)
T ss_pred -------------ccHhhhccCCcccchheeccccccCCCCccccccccccCccchhhhHH
Confidence 12358899875 4699999999999999999999999999996 44
No 48
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.95 E-value=2.2e-06 Score=103.51 Aligned_cols=46 Identities=43% Similarity=1.143 Sum_probs=41.9
Q ss_pred cccccccCCCCce---eecCCCCCccccCCCC----CCCCCCCCCccCCCCcc
Q 000791 833 DYKCSVCHFGGEL---LLCDRCPSSFHRNCVG----LEDVPDGDWFCPSCCCS 878 (1282)
Q Consensus 833 dd~C~vC~dgGeL---L~CD~Cp~afH~~CL~----L~~vP~g~W~C~~C~C~ 878 (1282)
+++|..|+..|.. +|||+||.+||+.||+ .+.+|.|.|+|+.|.|.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999998876 9999999999999998 56899999999999875
No 49
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.93 E-value=2.6e-06 Score=93.97 Aligned_cols=80 Identities=25% Similarity=0.593 Sum_probs=57.9
Q ss_pred CCceEeCCCCCeeeccceeeccCCC-ccCCCceEEccCCcchhhhhhhhhhcccccCCCCCCCccccCCcccCCCccccc
Q 000791 759 RDGIKCKCCGKVYTLSGFEDHAGST-YCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGEPHNRLKGNLLQGENDYKCS 837 (1282)
Q Consensus 759 ~dGI~C~CC~k~fS~S~FE~HAG~~-~~~P~~nI~L~dGkSL~~C~ie~~~~~~~~~~~~e~~sRlk~~~~~~~ndd~C~ 837 (1282)
.+.|.|.-|+..=|||++...+-+. .-+-| .|.- ..-.+|.
T Consensus 244 eelvscsdcgrsghpsclqft~nm~~avk~y-----------------rwqc---------------------ieck~cs 285 (336)
T KOG1244|consen 244 EELVSCSDCGRSGHPSCLQFTANMIAAVKTY-----------------RWQC---------------------IECKYCS 285 (336)
T ss_pred hhhcchhhcCCCCCcchhhhhHHHHHHHHhh-----------------eeee---------------------eecceec
Confidence 3568999999999999887666541 11101 0111 1123588
Q ss_pred ccCCC---CceeecCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 000791 838 VCHFG---GELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 838 vC~dg---GeLL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~ 876 (1282)
+|+.. .+||+||.|+++||++||. +.+.|+|.|.|..|.
T Consensus 286 icgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 286 ICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 88864 4599999999999999998 788899999999874
No 50
>PRK10514 putative acetyltransferase; Provisional
Probab=97.93 E-value=2.6e-05 Score=77.80 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=62.5
Q ss_pred EEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEcCH
Q 000791 1030 LERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTA 1109 (1282)
Q Consensus 1030 L~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v~~ 1109 (1282)
...++++||.+.+.- .++..++|.++|||||+|+.||+.+++.+.. +...+...-..+..||+ |+||+..+.
T Consensus 55 ~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~~ 126 (145)
T PRK10514 55 VDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTGR 126 (145)
T ss_pred EecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEecc
Confidence 346789999988742 3566899999999999999999999987643 34444445567999999 999999876
Q ss_pred HHHH-hhcccceeee
Q 000791 1110 SERV-QLVDYTFLNF 1123 (1282)
Q Consensus 1110 ~~l~-~~~~h~~m~F 1123 (1282)
.... .+.....+.|
T Consensus 127 ~~~~~~~~~~~~~~~ 141 (145)
T PRK10514 127 SEVDDQGRPYPLLHL 141 (145)
T ss_pred cccCCCCCccceEEE
Confidence 4322 3334444433
No 51
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.92 E-value=1.5e-06 Score=105.17 Aligned_cols=109 Identities=28% Similarity=0.655 Sum_probs=71.5
Q ss_pred cccccCCCCc---eeecCCCCCccccCCCC--CCCCCCCCCccCCCC-cccCCCCCCC------C-cc------c--c--
Q 000791 835 KCSVCHFGGE---LLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC-CSICGNSNSR------E-EV------E--D-- 891 (1282)
Q Consensus 835 ~C~vC~dgGe---LL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~-C~iCgk~~~~------~-~~------~--~-- 891 (1282)
.|..|+.+|+ +++|+.|+-+||.+|.. ...++.|.|+|+.|. |.-|...... . .. . .
T Consensus 70 vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cP 149 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCP 149 (694)
T ss_pred eeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCc
Confidence 4788886554 99999999999999997 789999999999885 4444332111 0 00 0 0
Q ss_pred ----c--c--CCceeecCccccccccccccCCCcchhccCCCCCcccCCcch-------hhHHhhhhh
Q 000791 892 ----V--V--DGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE-------EIFLGLQRL 944 (1282)
Q Consensus 892 ----~--~--~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~-------~I~~~Lq~l 944 (1282)
+ . .-.++.|++|.+|-|..|-.......+...-.-.+-|+ .|. .|.+.|+++
T Consensus 150 vc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS-~CR~es~qvKdi~~~vqe~ 216 (694)
T KOG4443|consen 150 VCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCS-TCRGESYQVKDISDALQET 216 (694)
T ss_pred hHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccc-eeehhhhhhhhHHHHHHhh
Confidence 0 0 11248999999999999988765432222223467776 464 455556655
No 52
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.92 E-value=6.4e-06 Score=99.71 Aligned_cols=44 Identities=41% Similarity=0.976 Sum_probs=36.2
Q ss_pred cccccccCCCCceeecCCCCCccccCCCC--C-CCCCCCCCccCCCC
Q 000791 833 DYKCSVCHFGGELLLCDRCPSSFHRNCVG--L-EDVPDGDWFCPSCC 876 (1282)
Q Consensus 833 dd~C~vC~dgGeLL~CD~Cp~afH~~CL~--L-~~vP~g~W~C~~C~ 876 (1282)
.+.|.+|..||++++|+.|+.+||..|-+ + ...+.+.|.|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 56799999999999999999999999987 2 23444568887774
No 53
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.92 E-value=5.3e-05 Score=62.33 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=55.2
Q ss_pred EEEEeCCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEe
Q 000791 1028 VLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvL 1088 (1282)
++++.++++||.+.+.... ...+++-.++|.++|||+|+|+.||..+.+.+.+.|.+++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3556789999999998776 478999999999999999999999999999999999999886
No 54
>PRK01346 hypothetical protein; Provisional
Probab=97.91 E-value=3.7e-05 Score=90.61 Aligned_cols=81 Identities=28% Similarity=0.253 Sum_probs=69.0
Q ss_pred EEEEEeCCEEEEEEEEEEe------cC--ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhh
Q 000791 1027 TVLLERNEELVTVATVRIF------GE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTW 1098 (1282)
Q Consensus 1027 ~~VL~~~~e~VsaA~lri~------g~--~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fw 1098 (1282)
.++++.+|++||.+.+..+ +. ..+.|-.|||.|+|||+|+|+.||..+++.+++.|+..+.|-+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4567889999999997543 22 468999999999999999999999999999999999988887654 4799
Q ss_pred hcccCeEEcCHH
Q 000791 1099 TTSFGFKRMTAS 1110 (1282)
Q Consensus 1099 t~kfGF~~v~~~ 1110 (1282)
+ +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 9 9999887764
No 55
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.89 E-value=6.9e-06 Score=97.55 Aligned_cols=107 Identities=25% Similarity=0.470 Sum_probs=78.9
Q ss_pred ccccccCC-----CCceeecCCCCCccccCCCCCCCCCCCCCccCCCC--------------------------------
Q 000791 834 YKCSVCHF-----GGELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC-------------------------------- 876 (1282)
Q Consensus 834 d~C~vC~d-----gGeLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~-------------------------------- 876 (1282)
..|.+|.. +.++..|+.|..+||..|........+.|.|..|.
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 34677764 34688999999999999996555555677777765
Q ss_pred -------cccCCCCCCCCccccccCCceeecCccccccccccccCCCcchhccCCCCCcccCCcchhhHHhhhhhcCC
Q 000791 877 -------CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGLQRLLGK 947 (1282)
Q Consensus 877 -------C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~I~~~Lq~llg~ 947 (1282)
|.+|...... ..+.|++|+.|..+||..|.++.....+...+.+.|||.. |..-.+.+..+.+.
T Consensus 164 ~~~~n~qc~vC~~g~~~------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~-C~~~~~~~~r~t~~ 234 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPG------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDV-CNRGPKKVPRLTLR 234 (464)
T ss_pred cccccceeeeeecCCcC------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehh-hccchhhccccccc
Confidence 5555443321 1257999999999999999999987777788999999995 76656665555443
No 56
>PRK10562 putative acetyltransferase; Provisional
Probab=97.88 E-value=3.3e-05 Score=77.74 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=61.2
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeE
Q 000791 1026 YTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFK 1105 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~ 1105 (1282)
..+++..+|++||.+.+... ..+..++|.++|||+|+|+.||+.+++.+..+.+ .+...-..+..||+ |+||+
T Consensus 49 ~~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~ 121 (145)
T PRK10562 49 QTWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFR 121 (145)
T ss_pred cEEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCE
Confidence 34566778999999987432 3678899999999999999999999886543322 22334457999999 99999
Q ss_pred EcCHHHHH
Q 000791 1106 RMTASERV 1113 (1282)
Q Consensus 1106 ~v~~~~l~ 1113 (1282)
.++....+
T Consensus 122 ~~~~~~~~ 129 (145)
T PRK10562 122 IVDSAWQE 129 (145)
T ss_pred EccccccC
Confidence 98865333
No 57
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.87 E-value=3.6e-05 Score=94.01 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=66.5
Q ss_pred eCCEEEEEEEEEEecCceE-----------EEeeeee--------ecCcccCChhHHHHHHHHHHHHHcCccEEEecCcc
Q 000791 1032 RNEELVTVATVRIFGEKAA-----------EIPLVGT--------RFQYRRLGMCRILMNELEKRLMELGVEKLILPAIP 1092 (1282)
Q Consensus 1032 ~~~e~VsaA~lri~g~~~A-----------EIp~VAT--------~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~ 1092 (1282)
.++.+||-.++|....+.. |+-..++ .++|||+|+|++||+++|+.|++.|++.|.|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 3679999999998765322 5555544 58999999999999999999999999999999999
Q ss_pred chhHhhhcccCeEEcCHH
Q 000791 1093 TVLKTWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1093 ~a~~fwt~kfGF~~v~~~ 1110 (1282)
.|..||+ ++||...++-
T Consensus 501 ~A~~FY~-klGf~~~g~y 517 (522)
T TIGR01211 501 GVREYYR-KLGYELDGPY 517 (522)
T ss_pred hHHHHHH-HCCCEEEcce
Confidence 9999999 9999987653
No 58
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.85 E-value=8.2e-06 Score=104.80 Aligned_cols=47 Identities=34% Similarity=0.969 Sum_probs=41.9
Q ss_pred CCCcccccccCCCC-----ceeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 000791 830 GENDYKCSVCHFGG-----ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1282)
Q Consensus 830 ~~ndd~C~vC~dgG-----eLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~ 876 (1282)
.+.|..|.+|.++. .++.||.|+.++|+.|++..-+|+|.|.|..|.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl 267 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCL 267 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhc
Confidence 35677899998763 499999999999999999999999999999996
No 59
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.84 E-value=9.2e-05 Score=74.85 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=70.8
Q ss_pred cCccEEEEEEeCCEEEEEEEEEE------ecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHc-CccEEEecCcc--
Q 000791 1022 FQGFYTVLLERNEELVTVATVRI------FGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIP-- 1092 (1282)
Q Consensus 1022 f~Gfy~~VL~~~~e~VsaA~lri------~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~l-gV~~LvLpA~~-- 1092 (1282)
-.++..+|++.+|++||.+.+.- ..+..+.+-.+++.++|||||+|+.+|.++.+.+... +++++++.--.
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N 124 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDN 124 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCC
Confidence 35678899999999999998742 2456678999999999999999999999999998876 79999886655
Q ss_pred -chhHhhhcccCeEEcCHH
Q 000791 1093 -TVLKTWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1093 -~a~~fwt~kfGF~~v~~~ 1110 (1282)
.|+..|+ |+||+.++..
T Consensus 125 ~~~~~~~~-k~GF~~~g~~ 142 (152)
T PF13523_consen 125 TRAIRLYE-KAGFRKVGEF 142 (152)
T ss_dssp HHHHHHHH-HTT-EEEEEE
T ss_pred HHHHHHHH-HcCCEEeeEE
Confidence 4899999 9999998765
No 60
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.82 E-value=0.0001 Score=84.80 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=68.3
Q ss_pred cEEEEEEe---CCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc-----cchhH
Q 000791 1025 FYTVLLER---NEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI-----PTVLK 1096 (1282)
Q Consensus 1025 fy~~VL~~---~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~-----~~a~~ 1096 (1282)
.|++.+.+ ++.+||.+.++.. .+.++|-.+++++.+||+|+|+.||.++++.++..|++.+.|... ..|+.
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~ 309 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLS 309 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHH
Confidence 45555543 5689999998764 456799999999999999999999999999999999999988653 35999
Q ss_pred hhhcccCeEEc
Q 000791 1097 TWTTSFGFKRM 1107 (1282)
Q Consensus 1097 fwt~kfGF~~v 1107 (1282)
||+ ++||...
T Consensus 310 fY~-~~GF~~~ 319 (320)
T TIGR01686 310 FYE-QIGFEDE 319 (320)
T ss_pred HHH-HcCCccC
Confidence 999 9999854
No 61
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.81 E-value=8.5e-05 Score=77.66 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=68.1
Q ss_pred EEEEEEeCCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHHH-HcCccEEEecCc---cchhHhhh
Q 000791 1026 YTVLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLM-ELGVEKLILPAI---PTVLKTWT 1099 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~-~lgV~~LvLpA~---~~a~~fwt 1099 (1282)
+.++++.+|++||++.+.... ...+++. +++.++|||+|+|+.++.++.+.+. .+|+++|++... ..+..||+
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 355667899999999986653 3456774 8999999999999999999999876 589999988654 46899999
Q ss_pred cccCeEEcCHH
Q 000791 1100 TSFGFKRMTAS 1110 (1282)
Q Consensus 1100 ~kfGF~~v~~~ 1110 (1282)
++||+..+..
T Consensus 137 -k~GF~~~~~~ 146 (186)
T PRK15130 137 -KLGFEVEGEL 146 (186)
T ss_pred -HCCCEEEEEE
Confidence 9999987653
No 62
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.79 E-value=0.00012 Score=73.66 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=67.0
Q ss_pred EEEEEeCCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHHHH-cCccEEEec---CccchhHhhhc
Q 000791 1027 TVLLERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILP---AIPTVLKTWTT 1100 (1282)
Q Consensus 1027 ~~VL~~~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~-lgV~~LvLp---A~~~a~~fwt~ 1100 (1282)
.++++.+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+.+ +|+.+|.+. ....++.||+
T Consensus 53 ~~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~- 129 (156)
T TIGR03585 53 YWIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE- 129 (156)
T ss_pred EEEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-
Confidence 34557899999999997665 456777655 889999 99999999999999874 799999864 4556999999
Q ss_pred ccCeEEcCHH
Q 000791 1101 SFGFKRMTAS 1110 (1282)
Q Consensus 1101 kfGF~~v~~~ 1110 (1282)
++||+..+..
T Consensus 130 k~Gf~~~g~~ 139 (156)
T TIGR03585 130 KFGFEREGVF 139 (156)
T ss_pred HcCCeEeeee
Confidence 9999988754
No 63
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.79 E-value=7.5e-06 Score=99.77 Aligned_cols=109 Identities=30% Similarity=0.778 Sum_probs=77.2
Q ss_pred cCCCcccccccCCC-----CceeecCCCCCccccCCCCCCCCCCCCCccCCCC------cccCCCCCCCC----------
Q 000791 829 QGENDYKCSVCHFG-----GELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC------CSICGNSNSRE---------- 887 (1282)
Q Consensus 829 ~~~ndd~C~vC~dg-----GeLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~------C~iCgk~~~~~---------- 887 (1282)
...++..|-+|..+ .+|++||.|....|+.|.++.++|+|.|.|..|. |..|-+.+...
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wA 346 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWA 346 (893)
T ss_pred eccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeee
Confidence 34477889999865 4699999999999999999999999999999997 66665433210
Q ss_pred ---------cc-----------cc-----------------ccCCceeecC--ccccccccccccCCCcch---hccCC-
Q 000791 888 ---------EV-----------ED-----------------VVDGSVLICH--QCELKYHRKCLQNGATDK---LKTHA- 924 (1282)
Q Consensus 888 ---------~~-----------~~-----------------~~~g~Ll~Cd--qCer~YH~~CL~~~~~~~---L~e~p- 924 (1282)
+. .. ..-|..++|. .|..+||+.|....+... +....
T Consensus 347 HvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~ 426 (893)
T KOG0954|consen 347 HVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDE 426 (893)
T ss_pred EeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeeccCCc
Confidence 00 00 1347778887 599999999998887542 11111
Q ss_pred -CCCcccCCcchhhH
Q 000791 925 -KETWFCSKKCEEIF 938 (1282)
Q Consensus 925 -~~~WfCs~~C~~I~ 938 (1282)
+..-||+. |..+.
T Consensus 427 v~~~s~c~k-hs~~~ 440 (893)
T KOG0954|consen 427 VKFKSYCSK-HSDHR 440 (893)
T ss_pred hhheeeccc-ccccc
Confidence 34468874 55554
No 64
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.77 E-value=0.00012 Score=69.19 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=56.6
Q ss_pred EEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEE-ecCc-cchhHhhhcccCeEEc
Q 000791 1030 LERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLI-LPAI-PTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1030 L~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~Lv-LpA~-~~a~~fwt~kfGF~~v 1107 (1282)
++++ +.++.+.-.+..+. ++|..|.|.|+|||+|+|+.|+.++.+.+.+.|...+. +.+. ..|+.+|+ |+||+.+
T Consensus 4 ~f~~-~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~ 80 (86)
T PF08445_consen 4 VFDG-ELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREI 80 (86)
T ss_dssp EECT-CCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEE
T ss_pred EEEC-CccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEE
Confidence 3444 44455554455555 89999999999999999999999999998888877533 3333 35899999 9999987
Q ss_pred CH
Q 000791 1108 TA 1109 (1282)
Q Consensus 1108 ~~ 1109 (1282)
.+
T Consensus 81 ~~ 82 (86)
T PF08445_consen 81 EE 82 (86)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 65
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.74 E-value=6.6e-05 Score=83.88 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=68.1
Q ss_pred EEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccE-EEecC-ccchhHhhhcccCe
Q 000791 1027 TVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEK-LILPA-IPTVLKTWTTSFGF 1104 (1282)
Q Consensus 1027 ~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~-LvLpA-~~~a~~fwt~kfGF 1104 (1282)
++.+..+|+||+.|.....+...++|-.|+|.|+|||+||+.+||.++=..+...|-.. |+..+ -+.|...|+ ++||
T Consensus 179 ~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-riGF 257 (268)
T COG3393 179 TYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RIGF 257 (268)
T ss_pred EEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-HhCC
Confidence 33345667999999999999999999999999999999999999999877766666654 44433 356899999 9999
Q ss_pred EEcCH
Q 000791 1105 KRMTA 1109 (1282)
Q Consensus 1105 ~~v~~ 1109 (1282)
+..++
T Consensus 258 ~~~g~ 262 (268)
T COG3393 258 REIGE 262 (268)
T ss_pred eecce
Confidence 98874
No 66
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.56 E-value=0.00026 Score=74.70 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=65.6
Q ss_pred EEEEEEeCCEEEEEEEEEEecC---ceEEEeeeeeecCcccCChhHHHHHHHHHHHHH-cCccEEEecCccc---hhHhh
Q 000791 1026 YTVLLERNEELVTVATVRIFGE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILPAIPT---VLKTW 1098 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g~---~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~-lgV~~LvLpA~~~---a~~fw 1098 (1282)
|.+++..++++||.+.|..+.. ..+||. +.+.++|||||+|+.++.++.+.+.. +|+++|.+..... ++.++
T Consensus 78 ~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ 156 (194)
T PRK10809 78 FALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLL 156 (194)
T ss_pred EEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHH
Confidence 4444445789999999876643 345655 46899999999999999999999876 7999999887664 89999
Q ss_pred hcccCeEEcCH
Q 000791 1099 TTSFGFKRMTA 1109 (1282)
Q Consensus 1099 t~kfGF~~v~~ 1109 (1282)
+ |+||+..+.
T Consensus 157 e-k~Gf~~~g~ 166 (194)
T PRK10809 157 A-RLGFEKEGY 166 (194)
T ss_pred H-HCCCcEEee
Confidence 9 999997653
No 67
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.53 E-value=0.00089 Score=71.35 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=92.1
Q ss_pred HHHhhhcccccccCCCchhhHHHHHhhccCCCCCcCcCccEEEEEEeCCEEEEEEEEEEe--c---CceEEEeeeeeecC
Q 000791 986 HRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIF--G---EKAAEIPLVGTRFQ 1060 (1282)
Q Consensus 986 L~Vm~EcF~Pi~D~rTg~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~~~e~VsaA~lri~--g---~~~AEIp~VAT~~~ 1060 (1282)
..+.+|.|.+-. ..++++...-+.. +++ --.+|..++|++|+..++--. | ....=+-.+||+++
T Consensus 18 ~~~~~~aF~~~~----e~~~v~~lR~~~~-----~~~--~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~ 86 (171)
T COG3153 18 EALTREAFGPGR----EAKLVDKLREGGR-----PDL--TLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPE 86 (171)
T ss_pred HHHHHHHhhcch----HHHHHHHHHhcCC-----ccc--ceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchh
Confidence 445678888333 3566666554331 121 245677888999998776443 2 24566788999999
Q ss_pred cccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEcCHHHHHhhcccceeeeCCccceeeccCC
Q 000791 1061 YRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPDTTMCLKLLQP 1135 (1282)
Q Consensus 1061 yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v~~~~l~~~~~h~~m~F~gt~ml~K~L~~ 1135 (1282)
|||||+|++||...++.|+..|...+++ .-.-++|. +|||+......+. .+.- +|.+.+|-+.|..
T Consensus 87 ~qg~GIG~~Lvr~~le~a~~~G~~~v~v---lGdp~YY~-rfGF~~~~~~~l~----~p~~-~~~~~fl~~~L~~ 152 (171)
T COG3153 87 YQGQGIGSALVREGLEALRLAGASAVVV---LGDPTYYS-RFGFEPAAGAKLY----APGP-VPDERFLALELGD 152 (171)
T ss_pred hcCCcHHHHHHHHHHHHHHHCCCCEEEE---ecCccccc-ccCcEEccccccc----cCCC-CCCceEEEEEccC
Confidence 9999999999999999999999999888 44567885 9999998764221 1111 6688888888775
No 68
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.51 E-value=6e-05 Score=93.94 Aligned_cols=69 Identities=35% Similarity=0.991 Sum_probs=57.9
Q ss_pred CCCCccccCCCC--CCCCCCCCCccCCCC--------------------cccCCCCCCCCccccccCCceeecCcccccc
Q 000791 850 RCPSSFHRNCVG--LEDVPDGDWFCPSCC--------------------CSICGNSNSREEVEDVVDGSVLICHQCELKY 907 (1282)
Q Consensus 850 ~Cp~afH~~CL~--L~~vP~g~W~C~~C~--------------------C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~Y 907 (1282)
.|++.||..|+. +..-|+++|.|+.|. |.+|+.. |.++.|+.|..+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~-----------g~~l~c~tC~~s~ 69 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG-----------GELLWCDTCPASF 69 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC-----------CcEEEeccccHHH
Confidence 489999999998 566678999999885 6666543 5689999999999
Q ss_pred ccccccCCCcchhccCCCCCcccCCcc
Q 000791 908 HRKCLQNGATDKLKTHAKETWFCSKKC 934 (1282)
Q Consensus 908 H~~CL~~~~~~~L~e~p~~~WfCs~~C 934 (1282)
|..|+.++ +...|.+.|.|++ |
T Consensus 70 h~~cl~~p----l~~~p~~~~~c~R-c 91 (696)
T KOG0383|consen 70 HASCLGPP----LTPQPNGEFICPR-C 91 (696)
T ss_pred HHHccCCC----CCcCCccceeeee-e
Confidence 99999987 6678888899995 6
No 69
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.47 E-value=0.00065 Score=70.66 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=65.4
Q ss_pred EEEEeCCEEEEEEEEEEecC--ceEEEeeeeeecCcccCChhHHHHHHHHHHHH-HcCccEEEecCcc---chhHhhhcc
Q 000791 1028 VLLERNEELVTVATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLM-ELGVEKLILPAIP---TVLKTWTTS 1101 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~g~--~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~-~lgV~~LvLpA~~---~a~~fwt~k 1101 (1282)
++++.+|++||.+.+..... ..++|.. .+.++|||||+|+.++.++.+.+. .+|+++|.+.... .+..+++ |
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-R 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-H
Confidence 44456899999999876543 5688875 589999999999999999999876 4789998876544 3788998 9
Q ss_pred cCeEEcCHH
Q 000791 1102 FGFKRMTAS 1110 (1282)
Q Consensus 1102 fGF~~v~~~ 1110 (1282)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987654
No 70
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.46 E-value=3.8e-05 Score=65.22 Aligned_cols=42 Identities=43% Similarity=1.293 Sum_probs=34.5
Q ss_pred cccccCC---CCceeecCCCCCccccCCCCCC----CCCCCCCccCCCC
Q 000791 835 KCSVCHF---GGELLLCDRCPSSFHRNCVGLE----DVPDGDWFCPSCC 876 (1282)
Q Consensus 835 ~C~vC~d---gGeLL~CD~Cp~afH~~CL~L~----~vP~g~W~C~~C~ 876 (1282)
+|.+|+. .+++|.|+.|.+.||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788887 5679999999999999999843 4455689999885
No 71
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.44 E-value=0.00038 Score=73.48 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=68.6
Q ss_pred EEEEEe--CCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhccc
Q 000791 1027 TVLLER--NEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSF 1102 (1282)
Q Consensus 1027 ~~VL~~--~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kf 1102 (1282)
+.+|.. ..++||-+++--.- .+..-+..|.|.+.+||+|+||+||+..|..++..|++.+.|....| ..||| .+
T Consensus 57 sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~l 134 (225)
T KOG3397|consen 57 SLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SL 134 (225)
T ss_pred eeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hh
Confidence 344443 35888888875443 36677899999999999999999999999999999999999966554 68999 89
Q ss_pred CeEEcCHHHHH
Q 000791 1103 GFKRMTASERV 1113 (1282)
Q Consensus 1103 GF~~v~~~~l~ 1113 (1282)
||+..++....
T Consensus 135 GYe~c~Pi~~~ 145 (225)
T KOG3397|consen 135 GYEKCDPIVHS 145 (225)
T ss_pred cccccCceecc
Confidence 99988876443
No 72
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.41 E-value=0.00079 Score=66.25 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=63.2
Q ss_pred cEEEEEEe--CCEEEEEEEEEEe--cCceEEEeeeeeecCcccCChhHHHHHHHHHHH-HHcCccEEEecCccc---hhH
Q 000791 1025 FYTVLLER--NEELVTVATVRIF--GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRL-MELGVEKLILPAIPT---VLK 1096 (1282)
Q Consensus 1025 fy~~VL~~--~~e~VsaA~lri~--g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l-~~lgV~~LvLpA~~~---a~~ 1096 (1282)
++.++++. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.++.+..-.+ +..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 55555554 3489999999544 47889999 669999999999999999999999 799999998766554 777
Q ss_pred hhhcccCeE
Q 000791 1097 TWTTSFGFK 1105 (1282)
Q Consensus 1097 fwt~kfGF~ 1105 (1282)
+++ |+||+
T Consensus 135 ~~~-k~GF~ 142 (142)
T PF13302_consen 135 LLE-KLGFE 142 (142)
T ss_dssp HHH-HTT-E
T ss_pred HHH-HcCCC
Confidence 777 89995
No 73
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0014 Score=68.25 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=101.0
Q ss_pred hhhhhhhhhhhHHHhhhcccccccCCCchhhHHHHHhhccCCCCCcCcCccEEEEEEe-CCEEEEEEEEEEe-----cCc
Q 000791 975 DIQTLSKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLER-NEELVTVATVRIF-----GEK 1048 (1282)
Q Consensus 975 die~lSkLa~AL~Vm~EcF~Pi~D~rTg~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~-~~e~VsaA~lri~-----g~~ 1048 (1282)
|.+.+-+|=.-+..++++-+|.+-. ..+|-.+ -|...+|.-.+.+.++. +++++|-|.+..+ |.+
T Consensus 13 D~~~i~rLikela~Fek~~~~v~~t--e~~l~~~-------~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~ 83 (163)
T KOG3216|consen 13 DCEDILRLIKELAEFEKLEDQVEAT--EENLARD-------GFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQ 83 (163)
T ss_pred cHHHHHHHHHHHHHHHHhccchhhc--hhhhhhh-------hccCCCccEEEEEEEecCCCceeEEeeeecccccccccc
Confidence 3344456777788888887777743 3344332 25566676666666666 7799999987665 556
Q ss_pred eEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEE---EecCccchhHhhhcccCeEEcCHHHHHhhcccceeeeCC
Q 000791 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL---ILPAIPTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPD 1125 (1282)
Q Consensus 1049 ~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~L---vLpA~~~a~~fwt~kfGF~~v~~~~l~~~~~h~~m~F~g 1125 (1282)
.-.|.=+=++++|||+|+|+.|++.+-+.+..+|..++ ++.--..|+.||+ +.|++.... ..++.+.|
T Consensus 84 ~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~-k~gaq~l~~--------W~l~r~~G 154 (163)
T KOG3216|consen 84 GIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYE-KVGAQDLKE--------WRLFRRTG 154 (163)
T ss_pred eEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHH-HhCccccce--------eEEEEech
Confidence 67888899999999999999999999999999999875 5555567999999 999988765 55666555
Q ss_pred cc
Q 000791 1126 TT 1127 (1282)
Q Consensus 1126 t~ 1127 (1282)
-.
T Consensus 155 ~a 156 (163)
T KOG3216|consen 155 EA 156 (163)
T ss_pred HH
Confidence 43
No 74
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.40 E-value=5.4e-05 Score=85.80 Aligned_cols=41 Identities=44% Similarity=1.121 Sum_probs=36.9
Q ss_pred cccccCCCCceeecCC--CC-CccccCCCCCCCCCCCCCccCCCC
Q 000791 835 KCSVCHFGGELLLCDR--CP-SSFHRNCVGLEDVPDGDWFCPSCC 876 (1282)
Q Consensus 835 ~C~vC~dgGeLL~CD~--Cp-~afH~~CL~L~~vP~g~W~C~~C~ 876 (1282)
+|. |...|+|+-||. |+ .-||..|++|...|.|.|||+.|+
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 344 667899999998 99 899999999999999999999885
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.37 E-value=5.7e-05 Score=95.52 Aligned_cols=100 Identities=29% Similarity=0.541 Sum_probs=71.1
Q ss_pred CCcccccccCCCCceeecCCCCCccccCCCC--CCCCCCCCCccCCCC-ccc-----CCCCCC---------CCccc---
Q 000791 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC-CSI-----CGNSNS---------REEVE--- 890 (1282)
Q Consensus 831 ~ndd~C~vC~dgGeLL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~-C~i-----Cgk~~~---------~~~~~--- 890 (1282)
+-++.|.+|.+.|+++||..||+.||..|+. +..+|...|.|.-|. |++ |--+.. ..+.+
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 4567799999999999999999999999997 678899999999876 211 100000 00000
Q ss_pred ---cc---------cCCceeecCc-ccccccc-ccccCCCcchhccCCCCCcccCC
Q 000791 891 ---DV---------VDGSVLICHQ-CELKYHR-KCLQNGATDKLKTHAKETWFCSK 932 (1282)
Q Consensus 891 ---~~---------~~g~Ll~Cdq-Cer~YH~-~CL~~~~~~~L~e~p~~~WfCs~ 932 (1282)
.| -++.++-|+. |...||. .|+..... -..++.+-|+|.+
T Consensus 422 r~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~~e 475 (1414)
T KOG1473|consen 422 RKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWERRE 475 (1414)
T ss_pred cchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhhHH
Confidence 01 1456777776 9999999 99984321 2467889999985
No 77
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00017 Score=79.71 Aligned_cols=44 Identities=41% Similarity=1.185 Sum_probs=37.7
Q ss_pred CcccccccCC--CCceeecCC--CCC-ccccCCCCCCCCCCCCCccCCCC
Q 000791 832 NDYKCSVCHF--GGELLLCDR--CPS-SFHRNCVGLEDVPDGDWFCPSCC 876 (1282)
Q Consensus 832 ndd~C~vC~d--gGeLL~CD~--Cp~-afH~~CL~L~~vP~g~W~C~~C~ 876 (1282)
+.-+| -|.+ -|+|+-||. |.+ -||..|++|...|.|.|||+.|+
T Consensus 220 e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 220 EELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred ceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 44567 4776 489999998 985 69999999999999999999985
No 78
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.14 E-value=0.00013 Score=91.11 Aligned_cols=50 Identities=46% Similarity=1.218 Sum_probs=43.9
Q ss_pred cCCCcccccccCCCCceeecCCCCCccccCCCC--CCCCCCCCCccCCCCcc
Q 000791 829 QGENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCS 878 (1282)
Q Consensus 829 ~~~ndd~C~vC~dgGeLL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~C~ 878 (1282)
++.+...|.+|.++|++++||.|+.+||.+|++ +...|.++|.|+.|.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 345667899999999999999999999999997 77888899999988653
No 79
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.10 E-value=0.00015 Score=89.13 Aligned_cols=48 Identities=29% Similarity=0.870 Sum_probs=39.2
Q ss_pred CcccCCCCCCCCccccccCCceeecCccccc-cccccccCCCcchhccCCCCCcccCCcchh
Q 000791 876 CCSICGNSNSREEVEDVVDGSVLICHQCELK-YHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 876 ~C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~-YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
.|.+|+.++- +..||.|+.|... ||.+||++. |.++|-+.|||.. |..
T Consensus 217 ~C~IC~~~Dp--------EdVLLLCDsCN~~~YH~YCLDPd----l~eiP~~eWYC~N-C~d 265 (1134)
T KOG0825|consen 217 KCDICTVHDP--------EDVLLLCDSCNKVYYHVYCLDPD----LSESPVNEWYCTN-CSL 265 (1134)
T ss_pred cceeeccCCh--------HHhheeecccccceeeccccCcc----cccccccceecCc-chh
Confidence 3777776643 2458999999998 999999986 8889999999984 853
No 80
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.03 E-value=0.00085 Score=72.89 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=54.4
Q ss_pred CCCchhhHHHHHhhccCCCCCcCcCccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHH
Q 000791 999 PYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRL 1078 (1282)
Q Consensus 999 ~rTg~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l 1078 (1282)
+|...|||+..+-.. +...+|.. -.-+.|-||||.|++|++|||++|++.+++.+
T Consensus 65 rRp~G~LiP~~L~~~---~~~~~f~~----------------------l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~ 119 (196)
T PF13718_consen 65 RRPKGHLIPQTLAQH---FGDPEFAQ----------------------LSGARIVRIAVHPDLQRMGYGSRLLQQLEQYA 119 (196)
T ss_dssp ---SS-HHHHHHHHH---SS-TTGGG----------------------SEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-
T ss_pred CCCCCCCHHHHHHHH---hCCHHHHh----------------------hcceeEEEEEEChhhhcCCHHHHHHHHHHHHH
Confidence 356679999888764 23334321 12367889999999999999999999999999
Q ss_pred -------------------------HHcCccEEE--ecCccchhHhhhcccCeEEcC
Q 000791 1079 -------------------------MELGVEKLI--LPAIPTVLKTWTTSFGFKRMT 1108 (1282)
Q Consensus 1079 -------------------------~~lgV~~Lv--LpA~~~a~~fwt~kfGF~~v~ 1108 (1282)
+..+|..|= ..+..++..||. |.||.++-
T Consensus 120 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~ 175 (196)
T PF13718_consen 120 EGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVY 175 (196)
T ss_dssp ----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEE
T ss_pred hhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEE
Confidence 466777654 457788999999 99999864
No 81
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.00 E-value=0.00026 Score=60.13 Aligned_cols=48 Identities=29% Similarity=0.974 Sum_probs=35.3
Q ss_pred cccCCCCCCCCccccccCCceeecCccccccccccccCCCcchhccCCCCCcccCCcch
Q 000791 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE 935 (1282)
Q Consensus 877 C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~ 935 (1282)
|.+|++... ++.++.|+.|.++||..|+++.... ...+...|+|+. |.
T Consensus 2 C~vC~~~~~--------~~~~i~C~~C~~~~H~~C~~~~~~~--~~~~~~~w~C~~-C~ 49 (51)
T PF00628_consen 2 CPVCGQSDD--------DGDMIQCDSCNRWYHQECVGPPEKA--EEIPSGDWYCPN-CR 49 (51)
T ss_dssp BTTTTSSCT--------TSSEEEBSTTSCEEETTTSTSSHSH--HSHHSSSBSSHH-HH
T ss_pred CcCCCCcCC--------CCCeEEcCCCChhhCcccCCCChhh--ccCCCCcEECcC-Cc
Confidence 667877332 3669999999999999999987532 233445999984 64
No 82
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.0039 Score=66.46 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=78.7
Q ss_pred CccEEEEEEeC-CEEEEEEEEEEecC-----ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc--cch
Q 000791 1023 QGFYTVLLERN-EELVTVATVRIFGE-----KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI--PTV 1094 (1282)
Q Consensus 1023 ~Gfy~~VL~~~-~e~VsaA~lri~g~-----~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~--~~a 1094 (1282)
.||+.+|++.+ |++++-|.+-.+.. .++|. .|=+++++||+|+|++|++++.+.+..+|++.++..-. ..|
T Consensus 50 ~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~a 128 (169)
T COG1247 50 DGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLA 128 (169)
T ss_pred CCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcH
Confidence 56888888766 89999888877753 33343 34589999999999999999999999999988765322 223
Q ss_pred hHhhhcccCeEEcCHHHHHhhcccceeeeCCccceeeccCC
Q 000791 1095 LKTWTTSFGFKRMTASERVQLVDYTFLNFPDTTMCLKLLQP 1135 (1282)
Q Consensus 1095 ~~fwt~kfGF~~v~~~~l~~~~~h~~m~F~gt~ml~K~L~~ 1135 (1282)
---.-.+|||...+..... ....=.+-++.+||+.|..
T Consensus 129 Si~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 129 SIALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred hHHHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 3333349999998875333 2233445667788887764
No 83
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.56 E-value=0.0071 Score=52.26 Aligned_cols=54 Identities=28% Similarity=0.441 Sum_probs=43.2
Q ss_pred CCCCCCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCccCCCCCCCceEEEEccccccCCccccccccCCCCcccC
Q 000791 21 KLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRP 99 (1282)
Q Consensus 21 ~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~~y-VeY~dL~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP 99 (1282)
.|++|+.|.+.. + .|.||+|+|+++.+...+ |.|.|+-+ .|+|+.+ .|||
T Consensus 2 ~~~~G~~~~a~~-~---d~~wyra~I~~~~~~~~~~V~f~D~G~-------~~~v~~~------------------~l~~ 52 (57)
T smart00333 2 TFKVGDKVAARW-E---DGEWYRARIIKVDGEQLYEVFFIDYGN-------EEVVPPS------------------DLRP 52 (57)
T ss_pred CCCCCCEEEEEe-C---CCCEEEEEEEEECCCCEEEEEEECCCc-------cEEEeHH------------------Heec
Confidence 589999999996 3 678999999999985544 99998832 4788863 5899
Q ss_pred CCCC
Q 000791 100 LPPP 103 (1282)
Q Consensus 100 ~PP~ 103 (1282)
.|+.
T Consensus 53 l~~~ 56 (57)
T smart00333 53 LPEE 56 (57)
T ss_pred CCCC
Confidence 8874
No 85
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.52 E-value=0.0018 Score=68.26 Aligned_cols=82 Identities=28% Similarity=0.745 Sum_probs=58.9
Q ss_pred cccccCC------CCceeecCCCCCccccCCCC--------CCCCCCCCC--ccCCCC---------------cccCCCC
Q 000791 835 KCSVCHF------GGELLLCDRCPSSFHRNCVG--------LEDVPDGDW--FCPSCC---------------CSICGNS 883 (1282)
Q Consensus 835 ~C~vC~d------gGeLL~CD~Cp~afH~~CL~--------L~~vP~g~W--~C~~C~---------------C~iCgk~ 883 (1282)
.|.+|+. -|.||.|-+|-.+||..||+ .+.|-.+.+ +|..|. |..|++.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 3778853 24599999999999999998 234555543 688886 8888775
Q ss_pred CCCCc-----------------ccc-------------ccCCceeecCccccccccccccCCC
Q 000791 884 NSREE-----------------VED-------------VVDGSVLICHQCELKYHRKCLQNGA 916 (1282)
Q Consensus 884 ~~~~~-----------------~~~-------------~~~g~Ll~CdqCer~YH~~CL~~~~ 916 (1282)
...-. ..+ -.++.|+.|..|.++||...|.+..
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 43110 001 1256789999999999999998864
No 86
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.40 E-value=0.016 Score=65.87 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=56.0
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEc
Q 000791 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1029 VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v 1107 (1282)
++..+|++||.|.=....++.+||. |+|+++|||||+++.+..++...+.+.|+...+=.+ ..+---.-.||||+..
T Consensus 169 ~i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~ 245 (265)
T PF12746_consen 169 CILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFD 245 (265)
T ss_dssp EEEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EE
T ss_pred EEEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCccc
Confidence 4456899999887777778888987 789999999999999999999999999998877753 2222222248999764
No 87
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.30 E-value=0.0018 Score=73.76 Aligned_cols=36 Identities=33% Similarity=0.826 Sum_probs=30.7
Q ss_pred CceeecCc--cc-cccccccccCCCcchhccCCCCCcccCCcchh
Q 000791 895 GSVLICHQ--CE-LKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 895 g~Ll~Cdq--Ce-r~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
|.|+.||. |+ .|||..|.. |...|.+.|||++++..
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEeccc------cccCCCCcccchhhhhh
Confidence 67999998 99 999999987 66789999999964443
No 88
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.25 E-value=0.0088 Score=75.79 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=49.3
Q ss_pred EEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEE--EecCccchhHhhhcccCeEEcC
Q 000791 1050 AEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL--ILPAIPTVLKTWTTSFGFKRMT 1108 (1282)
Q Consensus 1050 AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~L--vLpA~~~a~~fwt~kfGF~~v~ 1108 (1282)
+.|-||||+|++|++|+|++|++.++++++ .|+..| -..+..++.+||. +.||.++-
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVh 590 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVH 590 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEE
Confidence 689999999999999999999999999996 345544 4457788999999 99999875
No 89
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.78 E-value=0.0065 Score=63.50 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=53.3
Q ss_pred EEEecCceEEEeeeeeecCcccCChhHHHHHH-HHHHHHHcCccEEEecCccchhHhhhcccCeEEcCH
Q 000791 1042 VRIFGEKAAEIPLVGTRFQYRRLGMCRILMNE-LEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTA 1109 (1282)
Q Consensus 1042 lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~a-IE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v~~ 1109 (1282)
.|.-|.. +.|-.+|+.++||.||++..|+.. |......--+.+++|=+-.-++|||+ +|||+.+++
T Consensus 95 h~s~g~n-i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 95 HRSGGHN-IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred hhcCCcc-eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 4444555 789999999999999999999876 44444444467888888889999999 999999987
No 90
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=95.77 E-value=0.038 Score=51.70 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=48.6
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEE
Q 000791 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL 1086 (1282)
Q Consensus 1029 VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~L 1086 (1282)
.+..+|+.+|....+. .++...|--.-|.+++||||+|+.||+++-+.+++.|.+-+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 4567788999999977 67788999999999999999999999999999999887654
No 91
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=95.74 E-value=0.0098 Score=64.39 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=55.0
Q ss_pred eEEEeeeeeecCcccCChhHHHHHHHHHHHHHcC-ccEEEecCcc---chhHhhhcccCeEEcCHH
Q 000791 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG-VEKLILPAIP---TVLKTWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1049 ~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg-V~~LvLpA~~---~a~~fwt~kfGF~~v~~~ 1110 (1282)
+.-|-.++|.+.||.+|+|..|++.+.+.+...+ ++++.|+++. .|+.||+ ++||+.+...
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeecc
Confidence 5779999999999999999999999999999999 8888888875 4999999 9999988753
No 92
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.70 E-value=0.0068 Score=63.24 Aligned_cols=31 Identities=45% Similarity=1.096 Sum_probs=26.2
Q ss_pred ccccCCCC--CCCCCCCCCccCCCCcccCCCCC
Q 000791 854 SFHRNCVG--LEDVPDGDWFCPSCCCSICGNSN 884 (1282)
Q Consensus 854 afH~~CL~--L~~vP~g~W~C~~C~C~iCgk~~ 884 (1282)
+||++||. |..+|+|+|+||.|.....++..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 59999998 89999999999999876555543
No 93
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.65 E-value=0.026 Score=61.04 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=61.8
Q ss_pred EEEEEEeCCEEEEEEEEEEe---cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEe---cCccchhHhhh
Q 000791 1026 YTVLLERNEELVTVATVRIF---GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL---PAIPTVLKTWT 1099 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~---g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvL---pA~~~a~~fwt 1099 (1282)
|.+..+..+++||-+.+|.- |..++-.-=|=+.++|||+|+|+.||+.+|..+.+.+.+.++| .+-..|.+||.
T Consensus 94 Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~ 173 (202)
T KOG2488|consen 94 YICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYH 173 (202)
T ss_pred EEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHH
Confidence 44444444489999999976 3234333344466889999999999999999999999886655 44556999999
Q ss_pred cccCeEEcCH
Q 000791 1100 TSFGFKRMTA 1109 (1282)
Q Consensus 1100 ~kfGF~~v~~ 1109 (1282)
++||-+...
T Consensus 174 -~~gf~~~~~ 182 (202)
T KOG2488|consen 174 -RLGFVVDEE 182 (202)
T ss_pred -HcCcccCCC
Confidence 899977543
No 94
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.061 Score=54.65 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=69.4
Q ss_pred CccEEEEEEeCC--EEEEEEEEEEec----CceEEEeeeeeecCcccCChhHHHHHHHHHHHHH-cCccEEEecCccc--
Q 000791 1023 QGFYTVLLERNE--ELVTVATVRIFG----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLME-LGVEKLILPAIPT-- 1093 (1282)
Q Consensus 1023 ~Gfy~~VL~~~~--e~VsaA~lri~g----~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~-lgV~~LvLpA~~~-- 1093 (1282)
.+.|.++...++ ++||.+.+..+. .+.+++...- .++|+|||++...+.++.+.+-. ++++++++-.-+.
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 345666666544 999999998665 5677777665 99999999999999999998766 9999998877665
Q ss_pred -hhHhhhcccCeEEcCHHHHH
Q 000791 1094 -VLKTWTTSFGFKRMTASERV 1113 (1282)
Q Consensus 1094 -a~~fwt~kfGF~~v~~~~l~ 1113 (1282)
+...++ |+||+..+.....
T Consensus 143 ~S~rv~e-k~Gf~~eg~~~~~ 162 (187)
T COG1670 143 ASIRVYE-KLGFRLEGELRQH 162 (187)
T ss_pred HHHHHHH-HcCChhhhhhhhc
Confidence 566666 9999988765443
No 95
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.57 E-value=0.013 Score=51.05 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=39.8
Q ss_pred eeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCe
Q 000791 1055 VGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1282)
Q Consensus 1055 VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF 1104 (1282)
++|.++|||+|+|+.|++.+++.++..|+. ....+..+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5566888888 7888
No 96
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=95.52 E-value=0.031 Score=48.29 Aligned_cols=51 Identities=24% Similarity=0.435 Sum_probs=45.8
Q ss_pred CCCCCCEEEeec-CCCEEEEEEEEEeCCCceEEEEeCCCCCeEEEccCCCccc
Q 000791 110 SLPFGLCVDVYY-NEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRIT 161 (1282)
Q Consensus 110 ~~~vGD~VDa~~-~dgWWeGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp~ 161 (1282)
.|++|+.|-|.+ ++.|..|+|+++.+. ..+.|+|.+-|....+..++||+-
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHHHeecC
Confidence 588999999999 999999999999764 579999999999999999999974
No 97
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.32 E-value=0.006 Score=72.61 Aligned_cols=57 Identities=32% Similarity=0.677 Sum_probs=41.9
Q ss_pred cccCCCCCCCCccccccCCceeecCccccccccccccCCCcchhccCC----CCCcccCCcc--hhhHHhhhhhcC
Q 000791 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHA----KETWFCSKKC--EEIFLGLQRLLG 946 (1282)
Q Consensus 877 C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p----~~~WfCs~~C--~~I~~~Lq~llg 946 (1282)
|++|.++..+ ..+++||.|...||.+||.++ |...| .+.|.|++ | .+-....+++..
T Consensus 547 CgiCkks~dQ--------Hll~~CDtC~lhYHlGCL~PP----LTR~Pkk~kn~gWqCsE-Cdk~esSD~e~ei~~ 609 (707)
T KOG0957|consen 547 CGICKKSTDQ--------HLLTQCDTCHLHYHLGCLSPP----LTRLPKKNKNFGWQCSE-CDKNESSDSEQEIIP 609 (707)
T ss_pred eeeeccchhh--------HHHhhcchhhceeeccccCCc----cccCcccccCcceeecc-cccccCcchhhhhcc
Confidence 8899888654 458999999999999999998 44444 46699996 7 334444455543
No 98
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=95.26 E-value=0.027 Score=54.40 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=56.3
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEE-E-ecCccchhHhhhcccCeEE
Q 000791 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKL-I-LPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1029 VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~L-v-LpA~~~a~~fwt~kfGF~~ 1106 (1282)
||-.+|.|||=... +..+||.--.|.|+|||||+.+.++....+.|.++|+.-- - ..+-..++.+-. +|||..
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~-~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSK-SLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHH-HCCCee
Confidence 34456888886553 7789999999999999999999999999999999999832 1 222223444444 788877
Q ss_pred cC
Q 000791 1107 MT 1108 (1282)
Q Consensus 1107 v~ 1108 (1282)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 65
No 99
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.05 E-value=0.0056 Score=82.33 Aligned_cols=46 Identities=48% Similarity=1.089 Sum_probs=40.5
Q ss_pred CCcccccccCCCC---ceeecCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 000791 831 ENDYKCSVCHFGG---ELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 831 ~ndd~C~vC~dgG---eLL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~ 876 (1282)
...-.|.+|...+ +++.|+.|..+||.+|+. +..+|.|+|+|+.|+
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 3445799998755 499999999999999998 889999999999997
No 100
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=94.98 E-value=0.064 Score=56.66 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=65.0
Q ss_pred EEEE-eCCEEEEEEEEEEec-----CceEEEeeeeeecCcccCChhHHHHHHHH-HHHHHcCccEEEecCcc---chhHh
Q 000791 1028 VLLE-RNEELVTVATVRIFG-----EKAAEIPLVGTRFQYRRLGMCRILMNELE-KRLMELGVEKLILPAIP---TVLKT 1097 (1282)
Q Consensus 1028 ~VL~-~~~e~VsaA~lri~g-----~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE-~~l~~lgV~~LvLpA~~---~a~~f 1097 (1282)
+|.+ .+|++||-....+.. ..-.+|-.+||..+||+.|++++||.... .++.-.+.+.+-|+... .|+..
T Consensus 44 yVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~L 123 (193)
T KOG3235|consen 44 YVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHL 123 (193)
T ss_pred EEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHh
Confidence 3455 568999988777664 22468999999999999999999997544 44556677888888775 49999
Q ss_pred hhcccCeEEcCHH
Q 000791 1098 WTTSFGFKRMTAS 1110 (1282)
Q Consensus 1098 wt~kfGF~~v~~~ 1110 (1282)
|++.+||.+.+-+
T Consensus 124 Y~~tl~F~v~eve 136 (193)
T KOG3235|consen 124 YKNTLGFVVCEVE 136 (193)
T ss_pred hhhccceEEeecc
Confidence 9999999987643
No 101
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.98 E-value=0.011 Score=70.47 Aligned_cols=44 Identities=43% Similarity=1.109 Sum_probs=35.0
Q ss_pred cccccccCC-----CCceeecCCCCCccccCCCC-C--CCCCCC-------CCccCCCC
Q 000791 833 DYKCSVCHF-----GGELLLCDRCPSSFHRNCVG-L--EDVPDG-------DWFCPSCC 876 (1282)
Q Consensus 833 dd~C~vC~d-----gGeLL~CD~Cp~afH~~CL~-L--~~vP~g-------~W~C~~C~ 876 (1282)
-.+|.||.. .|+++-||.|+-..|-.|++ + ..+|.| .|||.-|.
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~ 177 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACL 177 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHh
Confidence 348999974 57899999999999999998 3 234443 49999997
No 102
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=94.94 E-value=0.19 Score=51.31 Aligned_cols=92 Identities=26% Similarity=0.307 Sum_probs=63.7
Q ss_pred CCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCccCCCCCCCceEEEEccccccCCccccccccCCCCcccCCCCC
Q 000791 25 GERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPLPPP 103 (1282)
Q Consensus 25 Gd~VEV~S~eeG~rGsWF~AtVI~~~~~~~y-VeY~dL~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP~PP~ 103 (1282)
|++|=.+++++|| ||+|||++......+ |++.+- ..+.|+...+ -+.-+.
T Consensus 1 g~~VlAR~~~DG~---YY~GtV~~~~~~~~~lV~f~~~--------~~~~v~~~~i------------------I~~~~~ 51 (124)
T PF15057_consen 1 GQKVLARREEDGF---YYPGTVKKCVSSGQFLVEFDDG--------DTQEVPISDI------------------IALSDA 51 (124)
T ss_pred CCeEEEeeCCCCc---EEeEEEEEccCCCEEEEEECCC--------CEEEeChHHe------------------EEccCc
Confidence 7899999999998 899999998866666 998222 3556665332 222111
Q ss_pred CCCCCCCCCCCCEEEeec---CCCEEEEEEEEE----eCCCceEEEEeCCCC
Q 000791 104 VKFGKCSLPFGLCVDVYY---NEAWWEGVIFDL----EDGSAERRIFFPDLG 148 (1282)
Q Consensus 104 ~~~~~~~~~vGD~VDa~~---~dgWWeGvV~~v----~~g~~~y~V~Fpgeg 148 (1282)
. ...+++||.|=|-+ +..|=.|+|... ...++.|+|.|-+..
T Consensus 52 ~---~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~ 100 (124)
T PF15057_consen 52 M---RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK 100 (124)
T ss_pred c---cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence 1 13577899998887 457888999963 223357999998744
No 103
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=94.79 E-value=0.2 Score=51.39 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=55.6
Q ss_pred EEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCcc-------chhHhhhcc
Q 000791 1029 LLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIP-------TVLKTWTTS 1101 (1282)
Q Consensus 1029 VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~-------~a~~fwt~k 1101 (1282)
...-|+.++|++.+.+.|. -++|.-++|++.=||.|+|..|++.+.+.+ -+|....+.+.. .+..|-. .
T Consensus 42 aArFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~-a 117 (128)
T PF12568_consen 42 AARFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQ-A 117 (128)
T ss_dssp EEEETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHH-H
T ss_pred EEEechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHH-H
Confidence 3467999999999998766 589999999999999999999999999998 455555554432 2456777 8
Q ss_pred cCeEEcCH
Q 000791 1102 FGFKRMTA 1109 (1282)
Q Consensus 1102 fGF~~v~~ 1109 (1282)
+||...++
T Consensus 118 ~GF~~~~~ 125 (128)
T PF12568_consen 118 CGFSAQSD 125 (128)
T ss_dssp HT-EE-SS
T ss_pred cCccccCC
Confidence 99987654
No 104
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=94.76 E-value=0.014 Score=65.21 Aligned_cols=35 Identities=31% Similarity=1.008 Sum_probs=30.1
Q ss_pred CceeecCc--cc-cccccccccCCCcchhccCCCCCcccCCcchh
Q 000791 895 GSVLICHQ--CE-LKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 895 g~Ll~Cdq--Ce-r~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
|.|+.||. |+ .|||..|.. |.+.|+|.|||+ .|++
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC~-eCk~ 269 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVG------LKEPPKGKWYCP-ECKK 269 (271)
T ss_pred ccceecCCCCCchhheeccccc------cCCCCCCcEeCH-HhHh
Confidence 67999996 87 589999987 778999999997 5876
No 105
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.64 E-value=0.005 Score=49.90 Aligned_cols=34 Identities=47% Similarity=1.269 Sum_probs=20.5
Q ss_pred CceeecCCCCCccccCCCCCCCCCCC-CCccCCCC
Q 000791 843 GELLLCDRCPSSFHRNCVGLEDVPDG-DWFCPSCC 876 (1282)
Q Consensus 843 GeLL~CD~Cp~afH~~CL~L~~vP~g-~W~C~~C~ 876 (1282)
..|+.|+.|.-.+|..|.++..++.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 45899999999999999999888888 89998773
No 106
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.60 E-value=0.085 Score=51.97 Aligned_cols=64 Identities=23% Similarity=0.229 Sum_probs=55.7
Q ss_pred CccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEe
Q 000791 1023 QGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1282)
Q Consensus 1023 ~Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvL 1088 (1282)
.+||+ +..+|+.++.++..-.|.+..-|.---|..++||||+++.|+....+.+++-|.+-+=+
T Consensus 15 ~~~y~--~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~ 78 (99)
T COG2388 15 NGRYV--LTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL 78 (99)
T ss_pred ceEEE--EecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc
Confidence 45564 48889999999988889899999999999999999999999999999999988864433
No 107
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=94.25 E-value=0.082 Score=48.23 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCCCCEEEeec-----CCCEEEEEEEEEeCCCceEEEEeCC------CC--CeEEEccCCCcccccc
Q 000791 111 LPFGLCVDVYY-----NEAWWEGVIFDLEDGSAERRIFFPD------LG--DEMTVGIDSLRITQDW 164 (1282)
Q Consensus 111 ~~vGD~VDa~~-----~dgWWeGvV~~v~~g~~~y~V~Fpg------eg--del~f~~~dLRp~~dW 164 (1282)
|+.|+.|||.. .++|+.|+|++....+ +|.|.+.+ .+ -.-.++..+|||.--.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECCcccccccccccEEEechheEECcCcC
Confidence 67899999998 7899999999987653 79999963 11 2456788889987544
No 108
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=94.15 E-value=0.11 Score=45.55 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.7
Q ss_pred CCCCCEEEEEeCCCCccceEEEEEEEEecCCC----ceEEeCCccCCCCCCCceEEEEccc
Q 000791 22 LPVGERVEVRSDEDGFLGSWHAGTVIASSSDC----RTVKYDHLLTDAGDDNLVDIVCVSS 78 (1282)
Q Consensus 22 FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~----~yVeY~dL~deDgs~~L~E~V~~s~ 78 (1282)
|++|++|-+.- ..|.||.|+|+++.... +||-|... ...+-|||+.++
T Consensus 1 ~~vG~~v~~~~----~~~~~y~A~I~~~r~~~~~~~YyVHY~g~-----nkR~DeWV~~~~ 52 (55)
T PF11717_consen 1 FEVGEKVLCKY----KDGQWYEAKILDIREKNGEPEYYVHYQGW-----NKRLDEWVPESR 52 (55)
T ss_dssp --TTEEEEEEE----TTTEEEEEEEEEEEECTTCEEEEEEETTS-----TGCC-EEEETTT
T ss_pred CCcCCEEEEEE----CCCcEEEEEEEEEEecCCCEEEEEEcCCC-----CCCceeeecHHH
Confidence 68999999996 57899999999986443 44999877 446889999753
No 109
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=93.73 E-value=0.074 Score=56.13 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=46.5
Q ss_pred EEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEE---ecCccchhHhhhcccCeEEc
Q 000791 1050 AEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLI---LPAIPTVLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1050 AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~Lv---LpA~~~a~~fwt~kfGF~~v 1107 (1282)
+++--+++.|.||++|+|+.||+.+|+.....+.--+- .-.-.-|+.||+ +|||.+.
T Consensus 70 ~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~Y 129 (173)
T KOG3234|consen 70 GHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSVY 129 (173)
T ss_pred eEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceEE
Confidence 68888999999999999999999999998877544333 333345999999 9999764
No 110
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=93.18 E-value=0.24 Score=56.83 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=66.7
Q ss_pred EEEEEEeC-CEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCe
Q 000791 1026 YTVLLERN-EELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF 1104 (1282)
Q Consensus 1026 y~~VL~~~-~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF 1104 (1282)
|+++.+.+ +++|+|+++ .|+ -|.-|||.+++||-|+.-.|+..+-..+-++|..+|++---++-..+.. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 45555555 899999996 444 4789999999999999999999999999999999999977777777776 7999
Q ss_pred EEcCHH
Q 000791 1105 KRMTAS 1110 (1282)
Q Consensus 1105 ~~v~~~ 1110 (1282)
..+...
T Consensus 111 ~~i~~~ 116 (352)
T COG3053 111 SEIASA 116 (352)
T ss_pred eEeecc
Confidence 988764
No 111
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=92.95 E-value=0.029 Score=67.66 Aligned_cols=42 Identities=43% Similarity=1.084 Sum_probs=34.2
Q ss_pred cccccCCCC-----ceeecCCCCCccccCCCC------CCCCCCCCCccCCCC
Q 000791 835 KCSVCHFGG-----ELLLCDRCPSSFHRNCVG------LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 835 ~C~vC~dgG-----eLL~CD~Cp~afH~~CL~------L~~vP~g~W~C~~C~ 876 (1282)
.|.+|..|+ +||.|+.|...||..|+. +..-+.+.|||..|.
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 399998643 699999999999999996 334477789999985
No 112
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=92.83 E-value=0.56 Score=41.74 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=38.1
Q ss_pred CCCCCCCEEEeecCC--CEEEEEEEEEeCCCceEEEEeCCCCCeEEEccCCC
Q 000791 109 CSLPFGLCVDVYYNE--AWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSL 158 (1282)
Q Consensus 109 ~~~~vGD~VDa~~~d--gWWeGvV~~v~~g~~~y~V~Fpgegdel~f~~~dL 158 (1282)
..|..|+.|.+||-+ -|.+|.|++....+..|+|.|.+ |.++++...|+
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D-Gtel~lke~di 54 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED-GTELELKENDI 54 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT-S-EEEEECCCE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC-CCEEEeccccc
Confidence 478999999999987 68899999976656689999998 78899988876
No 113
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=92.64 E-value=0.53 Score=52.93 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCCCcCcCccEEEEEEe--CCEEEEEEEEEEe------------------------------cCceEEEeeeeeecCccc
Q 000791 1016 MLNRLNFQGFYTVLLER--NEELVTVATVRIF------------------------------GEKAAEIPLVGTRFQYRR 1063 (1282)
Q Consensus 1016 ~f~Rl~f~Gfy~~VL~~--~~e~VsaA~lri~------------------------------g~~~AEIp~VAT~~~yRg 1063 (1282)
++...|-. -.|+++.. +|++||++||... .+.++|+-|+|+.+.||+
T Consensus 47 E~D~~D~~-~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~ 125 (241)
T TIGR03694 47 ETDEYDAH-SVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRR 125 (241)
T ss_pred cCCCCCCC-CcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhC
Confidence 44555643 34555543 4899999999752 136899999999999997
Q ss_pred C--------C--------------------hhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCe--EEcCHH
Q 000791 1064 L--------G--------------------MCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF--KRMTAS 1110 (1282)
Q Consensus 1064 q--------G--------------------mgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF--~~v~~~ 1110 (1282)
. | +...|+.++-+.+...|+++++.-+-+.....+. ++|+ +++++.
T Consensus 126 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~~lG~~ 201 (241)
T TIGR03694 126 RKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFRQVGPP 201 (241)
T ss_pred CcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceEEcCCC
Confidence 4 2 4567999999999999999999988888888887 7885 566664
No 114
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.55 E-value=0.94 Score=44.44 Aligned_cols=82 Identities=20% Similarity=0.075 Sum_probs=64.9
Q ss_pred hhhHHHHHhhccCCCCCcCcCccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcC
Q 000791 1003 GDLAEDVLFSRWSMLNRLNFQGFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG 1082 (1282)
Q Consensus 1003 ~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg 1082 (1282)
.+..+++.-..... .....++++.+|++||++..-.+ .+.+..-.++++++|++.|.|..|+..+.+.+.+.|
T Consensus 55 ~~~~~~l~~~~~~~------~~~~l~~~~~~g~~va~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g 127 (142)
T PF13480_consen 55 RDFFRDLLRSLAES------GRLRLFVLYDGGEPVAFALGFRH-GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERG 127 (142)
T ss_pred HHHHHHHHHhhccC------CCEEEEEEEECCEEEEEEEEEEE-CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCC
Confidence 56666666543211 23466778889999999977554 557789999999999999999999999999999999
Q ss_pred ccEEEecCc
Q 000791 1083 VEKLILPAI 1091 (1282)
Q Consensus 1083 V~~LvLpA~ 1091 (1282)
++.+-+...
T Consensus 128 ~~~~d~g~g 136 (142)
T PF13480_consen 128 LRYFDFGGG 136 (142)
T ss_pred CCEEEECCC
Confidence 999988554
No 115
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=92.34 E-value=0.21 Score=47.98 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=34.8
Q ss_pred ccceEEEEEEEEecCC-------Cce-EEeCCccCCCCCCCceEEEEccccccCCccccccccCCCCcccCCCCCCCCCC
Q 000791 37 FLGSWHAGTVIASSSD-------CRT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPLPPPVKFGK 108 (1282)
Q Consensus 37 ~rGsWF~AtVI~~~~~-------~~y-VeY~dL~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP~PP~~~~~~ 108 (1282)
..||||.|+|+.+... -.| |+|+++... | ...+.. ..|||.--..-. -
T Consensus 8 ~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~-g----vv~~~~------------------~~iRpRARt~l~-w 63 (85)
T PF12148_consen 8 NMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPEN-G----VVEMRS------------------KDIRPRARTILK-W 63 (85)
T ss_dssp TT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG------EEEEEG------------------GGEEE---SBE--G
T ss_pred CCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCc-C----ceeccc------------------ccccceeeEecc-H
Confidence 4699999999987532 246 999999643 1 233443 368998654321 2
Q ss_pred CCCCCCCEEEeecC
Q 000791 109 CSLPFGLCVDVYYN 122 (1282)
Q Consensus 109 ~~~~vGD~VDa~~~ 122 (1282)
..+++|+.|=+-||
T Consensus 64 ~~L~VG~~VMvNYN 77 (85)
T PF12148_consen 64 DELKVGQVVMVNYN 77 (85)
T ss_dssp GG--TT-EEEEEE-
T ss_pred HhCCcccEEEEecC
Confidence 47999999988776
No 116
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=92.26 E-value=0.065 Score=56.14 Aligned_cols=26 Identities=35% Similarity=0.799 Sum_probs=22.9
Q ss_pred ccccccccCCCcchhccCCCCCcccCCcchh
Q 000791 906 KYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 906 ~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
.||..||+++ |..+|+++|+|+. |..
T Consensus 1 g~H~~CL~Pp----l~~~P~g~W~Cp~-C~~ 26 (148)
T cd04718 1 GFHLCCLRPP----LKEVPEGDWICPF-CEV 26 (148)
T ss_pred CcccccCCCC----CCCCCCCCcCCCC-CcC
Confidence 4999999998 8899999999996 653
No 117
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.25 E-value=0.11 Score=62.46 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=53.4
Q ss_pred EEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEEcCH
Q 000791 1042 VRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKRMTA 1109 (1282)
Q Consensus 1042 lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~v~~ 1109 (1282)
++++|..+ -|.. . ...+|++|||+.||+..|+.|++-|.+++.+=+..-+...|. ||||...++
T Consensus 446 lhvyg~~v-pig~-~-~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 446 LHVYGSEV-PIGK-R-EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred hhcccccc-cccc-C-cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 55666654 2333 2 688999999999999999999999999998888889999999 999988765
No 118
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=92.08 E-value=0.47 Score=39.63 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCccCCCCCCCceEEEEcc
Q 000791 25 GERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHLLTDAGDDNLVDIVCVS 77 (1282)
Q Consensus 25 Gd~VEV~S~eeG~rGsWF~AtVI~~~~~~~y-VeY~dL~deDgs~~L~E~V~~s 77 (1282)
|+.+-++..+ -|.||||+|+++.+...+ |.|.|+-+ .|.|+.+
T Consensus 1 G~~c~a~~~~---d~~wyra~V~~~~~~~~~~V~f~DyG~-------~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSD---DGKWYRAKITSILSDGKVEVFFVDYGN-------TEVVPLS 44 (48)
T ss_pred CCEEEEEECC---CCeEEEEEEEEECCCCcEEEEEEcCCC-------cEEEeHH
Confidence 6677777544 378999999999855544 99998833 4667753
No 119
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=91.84 E-value=0.26 Score=57.79 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=65.0
Q ss_pred cCcCccEEEEEEeCCEEEEEEEEEEe------cC---ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecC
Q 000791 1020 LNFQGFYTVLLERNEELVTVATVRIF------GE---KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPA 1090 (1282)
Q Consensus 1020 l~f~Gfy~~VL~~~~e~VsaA~lri~------g~---~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA 1090 (1282)
+++.|+|. ++.+.++++- |++. |+ ..|-|-.||+.|+|||+|+-|.||....+..++.|+.-.+|.+
T Consensus 36 l~~~n~~v--i~~nqkl~s~--L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P 111 (389)
T COG4552 36 LAEPNSYV--IYMNQKLASR--LHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP 111 (389)
T ss_pred ccCCcceE--Eeehhhhhhc--ccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc
Confidence 45566664 4777777553 3333 44 3466788999999999999999999999999999999999965
Q ss_pred ccchhHhhhcccCeEEcCH
Q 000791 1091 IPTVLKTWTTSFGFKRMTA 1109 (1282)
Q Consensus 1091 ~~~a~~fwt~kfGF~~v~~ 1109 (1282)
. -.+||. ||||...+.
T Consensus 112 ~--s~~iYr-KfGye~asn 127 (389)
T COG4552 112 F--SGGIYR-KFGYEYASN 127 (389)
T ss_pred C--chhhHh-hccccccce
Confidence 5 467999 999987765
No 120
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=91.51 E-value=0.37 Score=40.27 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=39.0
Q ss_pred CCEEEeecC--CCEEEEEEEEEeCCCceEEEEeCCCCCeEEEccCCCcc
Q 000791 114 GLCVDVYYN--EAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRI 160 (1282)
Q Consensus 114 GD~VDa~~~--dgWWeGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp 160 (1282)
|+.|=|.+. +.|..|+|.++.. ...+.|+|-+-|....++.++||+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHHHcCC
Confidence 667778776 7999999999975 347999999988888899999986
No 121
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=89.28 E-value=1.5 Score=47.65 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=57.4
Q ss_pred EEEEEEeCCEEEEEEEEEEec-------CceEEEeeeeeecCcccCChhHHHHHHHH-HHHHHcCccEEEecCccchhHh
Q 000791 1026 YTVLLERNEELVTVATVRIFG-------EKAAEIPLVGTRFQYRRLGMCRILMNELE-KRLMELGVEKLILPAIPTVLKT 1097 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g-------~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE-~~l~~lgV~~LvLpA~~~a~~f 1097 (1282)
+.+++...+++|++..+-.+- ..+.-+.+.=+.|+|||+|+++ |+..+. +.+.. +=...++.+...+..|
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHHH
Confidence 334333445788877653321 2367777777999999999996 555554 44444 4455777788899999
Q ss_pred hhcccCeEEcCH
Q 000791 1098 WTTSFGFKRMTA 1109 (1282)
Q Consensus 1098 wt~kfGF~~v~~ 1109 (1282)
|..-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999888776
No 122
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=88.97 E-value=0.11 Score=70.32 Aligned_cols=50 Identities=24% Similarity=0.758 Sum_probs=40.1
Q ss_pred cccCCCCCCCCccccccCCceeecCccccccccccccCCCcchhccCCCCCcccCCcchhhHH
Q 000791 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFL 939 (1282)
Q Consensus 877 C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~I~~ 939 (1282)
|.+|...... ..++.|+.|..+||..|+++. +...|.+.|+|+. |..-..
T Consensus 1111 c~~cr~k~~~--------~~m~lc~~c~~~~h~~C~rp~----~~~~~~~dW~C~~-c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKKQD--------EKMLLCDECLSGFHLFCLRPA----LSSVPPGDWMCPS-CRKEHR 1160 (1404)
T ss_pred hhhhhhcccc--------hhhhhhHhhhhhHHHHhhhhh----hccCCcCCccCCc-cchhhh
Confidence 6677665432 358999999999999999987 8899999999996 765443
No 123
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=87.86 E-value=7.1 Score=40.39 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=65.5
Q ss_pred CCCCEEEEEeCCCCccceEEEEEEEEecCCC-ce-EEeCCccCCCCCCCceEEEEccccccCCccccccccCCCCcccCC
Q 000791 23 PVGERVEVRSDEDGFLGSWHAGTVIASSSDC-RT-VKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPL 100 (1282)
Q Consensus 23 kvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~-~y-VeY~dL~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~IRP~ 100 (1282)
++|+.|=.+-...+-.+.|+-|+|++..+.. +| |+ |.-+++ . +-.=.++ +.+|=|.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~~rYeV~--D~d~~~-~-~~~~~~~------------------~~~iIPL 58 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDGNRYEVE--DPDPEE-E-KKRYKLS------------------RKQIIPL 58 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETTTTEEEEE--ETTTCT-T-TEEEEEE------------------GGGEEEE
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCCCEEEEe--cCCCCC-C-CceEEeC------------------HHHEEEC
Confidence 4799999987666667999999999998777 55 44 221121 1 1122232 2456666
Q ss_pred CC---CCCCCCCCCCCCCEEEeecCC--CEEEEEEEEEe-CCCceEEEEeCCCCCe
Q 000791 101 PP---PVKFGKCSLPFGLCVDVYYNE--AWWEGVIFDLE-DGSAERRIFFPDLGDE 150 (1282)
Q Consensus 101 PP---~~~~~~~~~~vGD~VDa~~~d--gWWeGvV~~v~-~g~~~y~V~Fpgegde 150 (1282)
|. +.......|..|..|=|.|=+ +...++|...- .....|.|.|.|+.+.
T Consensus 59 P~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~ 114 (130)
T PF07039_consen 59 PKKAPPDTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDA 114 (130)
T ss_dssp -SB--TTT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTST
T ss_pred CCccCCCCCchhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCc
Confidence 65 111224579999999999988 99999999972 2334799999986664
No 124
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=87.74 E-value=0.29 Score=64.45 Aligned_cols=46 Identities=24% Similarity=0.806 Sum_probs=34.0
Q ss_pred cccCCCCCCCCccccccCCceeecCccccccccccccCCCcchhccCCCCCcccCCcch
Q 000791 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE 935 (1282)
Q Consensus 877 C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~ 935 (1282)
|.+|.+...+. -+.+++||.|..++|..|... .-+|++.|+|-+ |-
T Consensus 222 C~iC~~~~~~n------~n~ivfCD~Cnl~VHq~Cygi------~~ipeg~WlCr~-Cl 267 (1051)
T KOG0955|consen 222 CCICLDGECQN------SNVIVFCDGCNLAVHQECYGI------PFIPEGQWLCRR-CL 267 (1051)
T ss_pred ceeecccccCC------CceEEEcCCCcchhhhhccCC------CCCCCCcEeehh-hc
Confidence 55565554332 256899999999999999983 457899999964 53
No 125
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=87.69 E-value=0.89 Score=48.92 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred EEEEEEeCCEEEEEEEEEEecCceEEEee-----eeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccc
Q 000791 1026 YTVLLERNEELVTVATVRIFGEKAAEIPL-----VGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPT 1093 (1282)
Q Consensus 1026 y~~VL~~~~e~VsaA~lri~g~~~AEIp~-----VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~ 1093 (1282)
|-+|-+ ++++||.-.||-.=++ ..++. -+|+|+.||+||++.++....+.++.+|++++.+.+..+
T Consensus 71 y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 71 YWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred EEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 444444 7999999999965322 22222 359999999999999999999999999999999977654
No 126
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=86.62 E-value=3.3 Score=45.70 Aligned_cols=94 Identities=9% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCCCcCcCc-cEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeeeeeecCcc---cCC----h
Q 000791 1016 MLNRLNFQG-FYTVLLERNEELVTVATVRIF---------------------GEKAAEIPLVGTRFQYR---RLG----M 1066 (1282)
Q Consensus 1016 ~f~Rl~f~G-fy~~VL~~~~e~VsaA~lri~---------------------g~~~AEIp~VAT~~~yR---gqG----m 1066 (1282)
+...+|-.. .|.+....+|++||++||-.. .++++|+-|+|+.+.++ +.+ +
T Consensus 44 E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~ 123 (207)
T PRK13834 44 ERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEA 123 (207)
T ss_pred CccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHH
Confidence 455555433 344555567899999987211 35799999999998853 222 5
Q ss_pred hHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccCe--EEcCHH
Q 000791 1067 CRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGF--KRMTAS 1110 (1282)
Q Consensus 1067 gr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF--~~v~~~ 1110 (1282)
...|+.++-+.+...|++.++.-..+-....+. ++|| +++++.
T Consensus 124 ~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~~lG~~ 168 (207)
T PRK13834 124 TLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQRLGEP 168 (207)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeEECCCC
Confidence 578999999999999999998866666667776 7886 556654
No 127
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=86.49 E-value=1.2 Score=41.43 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEeC------CCceEEEEeCCCCCeEEEccCCCccccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLED------GSAERRIFFPDLGDEMTVGIDSLRITQD 163 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~~------g~~~y~V~Fpgegdel~f~~~dLRp~~d 163 (1282)
|.+||.|=|-..+ .||.|+|..... ....+.|+|-|+.+..-+..++|+|-.+
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~ 60 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFSE 60 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECCH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChhh
Confidence 5688988887765 799999999732 2347999999988766666666666553
No 128
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=85.71 E-value=0.49 Score=62.39 Aligned_cols=118 Identities=30% Similarity=0.550 Sum_probs=76.2
Q ss_pred CcccccccCCCCc--eeecCCCCCccccCCCC--CCCCCCCCCccCCCCcccCCCCCCCCccccccCCceeecCcccccc
Q 000791 832 NDYKCSVCHFGGE--LLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCSICGNSNSREEVEDVVDGSVLICHQCELKY 907 (1282)
Q Consensus 832 ndd~C~vC~dgGe--LL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~Y 907 (1282)
....|..|..+.. ++.|+.|...||.+|.. +..++.|+|.|+.|....|...... ..-.+=.+.|
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~gf~~~~~~y 222 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYK-----------FGFEQGSREY 222 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccc-----------cCcCCCCCcc
Confidence 3356888887663 34999999999999998 7899999999999987644433221 1122334455
Q ss_pred ccccccCCCcchhccCCCCCcccCCcchhhHHhhhhhcCCCCc--cccCccceEEeccccCcccccccchhhh
Q 000791 908 HRKCLQNGATDKLKTHAKETWFCSKKCEEIFLGLQRLLGKPIP--IGVPNLTWTLVKFSQHDTCKLDATDIQT 978 (1282)
Q Consensus 908 H~~CL~~~~~~~L~e~p~~~WfCs~~C~~I~~~Lq~llg~~~~--~~vd~~sW~LL~~~~~d~~v~~~adie~ 978 (1282)
+...... ..+......|..+ ..+.+ ..+++.+|+++.....++.+.++++.++
T Consensus 223 t~~~f~~-----~~~~~~~~~~~~~-------------~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~ 277 (904)
T KOG1246|consen 223 TLPKFEE-----YADNFKKDYFPKS-------------KNSPDSTEDVEKEFWRLVASNLESVEVLYGADLST 277 (904)
T ss_pred ccchhhh-----Hhhhhhccccccc-------------cCCCCchHHHHHHHHHhhcccccceeeeeccchhh
Confidence 5443322 2333344445432 11111 2467889999998877777788888865
No 129
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=85.59 E-value=4.5 Score=43.91 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=64.7
Q ss_pred CCCCcCcCccEEEEEEeCCEEEEEEEEEEe---------------------cCceEEEeeeeeecCccc------CChhH
Q 000791 1016 MLNRLNFQGFYTVLLERNEELVTVATVRIF---------------------GEKAAEIPLVGTRFQYRR------LGMCR 1068 (1282)
Q Consensus 1016 ~f~Rl~f~Gfy~~VL~~~~e~VsaA~lri~---------------------g~~~AEIp~VAT~~~yRg------qGmgr 1068 (1282)
++..+|=-+=.++|...+|+++|++||... +++++|+-|+|+.++.++ .-+..
T Consensus 36 E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~ 115 (182)
T PF00765_consen 36 EIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTM 115 (182)
T ss_dssp E--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHH
T ss_pred EeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHH
Confidence 444555333344445566999999998642 368999999999988532 23678
Q ss_pred HHHHHHHHHHHHcCccEEEecCccchhHhhhcccCeEE
Q 000791 1069 ILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFGFKR 1106 (1282)
Q Consensus 1069 ~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfGF~~ 1106 (1282)
.|+.++-+.+.+.|++.++.=+..-...++. ++||..
T Consensus 116 ~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~ 152 (182)
T PF00765_consen 116 ELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPV 152 (182)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCce
Confidence 9999999999999999999977777888888 888854
No 130
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=84.92 E-value=4.4 Score=39.77 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=41.8
Q ss_pred cCCCCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCceEEeCCccCCCCCCCceEEEEcc
Q 000791 17 CGQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVDIVCVS 77 (1282)
Q Consensus 17 ~~~~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~~yVeY~dL~deDgs~~L~E~V~~s 77 (1282)
.....|++|.++|+.... --..+..|||+++.|....|.|+...+. --.|++..
T Consensus 23 ~~~~~F~vGmkLEavD~~--~~~~i~vAtV~~v~g~~l~v~~dg~~~~-----~D~W~~~~ 76 (96)
T smart00561 23 SPPNGFKVGMKLEAVDPR--NPSLICVATVVEVKGYRLLLHFDGWDDK-----YDFWCDAD 76 (96)
T ss_pred CccCcccCCCEEEEECCC--CCceEEEEEEEEEECCEEEEEEccCCCc-----CCEEEECC
Confidence 346789999999999543 2467889999999988777999977321 45899863
No 131
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=84.78 E-value=1 Score=43.25 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=46.0
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEeCC------CceEEEEeCCCCCeEEEccCCCcccccccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLEDG------SAERRIFFPDLGDEMTVGIDSLRITQDWDE 166 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~~g------~~~y~V~Fpgegdel~f~~~dLRp~~dW~d 166 (1282)
|.+||.|=+=..+ .||.|.|++.... ...+.|+|-|+++..-++.++|-|..+..+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~~~ 63 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFFK 63 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCCEeEECHHHCcChhHhHH
Confidence 5689999887777 9999999986321 135999999999988899999999888863
No 132
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=84.68 E-value=2 Score=49.29 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=43.1
Q ss_pred CCCCCCCEEEeec--CCCEEEEEEEEEeCCCceEEEEeCCCCCeEEEccCCCccccccc
Q 000791 109 CSLPFGLCVDVYY--NEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 109 ~~~~vGD~VDa~~--~dgWWeGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp~~dW~ 165 (1282)
..|+|||..-|.| +|.|.+++|..+....+.+.|.|.|=|..-++...+|+|.-...
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~dL~~~~~~~ 125 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSDLKPSEGDV 125 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEEETT---
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhhhccccccc
Confidence 5899999998888 55899999999976555799999998888899999999986653
No 133
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=84.43 E-value=0.48 Score=59.61 Aligned_cols=47 Identities=23% Similarity=0.837 Sum_probs=35.5
Q ss_pred cccCCCCCCCCccccccCCceeecCccccccccccccCCCcchhccCCCCCcccCCcchh
Q 000791 877 CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 877 C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
|.+|..++.++ .+.|++|+.|.-..|..|.. +.++|++.|.|.. |..
T Consensus 274 CDvCrspD~e~------~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlCr~-Cal 320 (893)
T KOG0954|consen 274 CDVCRSPDSEE------ANEMVFCDKCNICVHQACYG------ILEVPEGPWLCRT-CAL 320 (893)
T ss_pred eceecCCCccc------cceeEEeccchhHHHHhhhc------eeecCCCCeeehh-ccc
Confidence 55555554432 25699999999999999987 5689999999974 543
No 134
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=83.84 E-value=11 Score=43.09 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=69.5
Q ss_pred CCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCce-EEeCCc-cCCCCCCCceEEEEccccccCCccccccccCCCCcc
Q 000791 20 RKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRT-VKYDHL-LTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHI 97 (1282)
Q Consensus 20 ~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~~y-VeY~dL-~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~I 97 (1282)
-...+|+.|-.+.....=.|-|+-|.|+++.+..+| ++-.|= ..+|..+.-.-..++ .+..+
T Consensus 126 ~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~ykl----------------p~~~~ 189 (264)
T KOG3038|consen 126 YVLLKGDEVAARVKAVSEDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKL----------------PRWKL 189 (264)
T ss_pred ccccCCceeeeeeeeccCCCCEEEEEEEEEecCCceEeEecCCCccccccccccceecc----------------cHhhc
Confidence 456788888888744444455999999999988876 442211 101111111111111 13345
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCC--CEEEEEEEEE-eCCCceEEEEeCCCC
Q 000791 98 RPLPPPVKFGKCSLPFGLCVDVYYNE--AWWEGVIFDL-EDGSAERRIFFPDLG 148 (1282)
Q Consensus 98 RP~PP~~~~~~~~~~vGD~VDa~~~d--gWWeGvV~~v-~~g~~~y~V~Fpgeg 148 (1282)
=|.||+. ..|..|..|=|.|-+ |..-|+|..- -++++.|.|.|-+..
T Consensus 190 ~p~p~p~----~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlffD~~ 239 (264)
T KOG3038|consen 190 NPIPPPT----ALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFFDDE 239 (264)
T ss_pred CCCCCCc----cCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeeecCc
Confidence 6666643 469999999999998 9999999884 466777777776533
No 135
>smart00258 SAND SAND domain.
Probab=83.67 E-value=0.59 Score=43.87 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=35.5
Q ss_pred CCceEeCC--C-CCeeeccceeeccCCCccCCCceEEccCCcchhhhh
Q 000791 759 RDGIKCKC--C-GKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQ 803 (1282)
Q Consensus 759 ~dGI~C~C--C-~k~fS~S~FE~HAG~~~~~P~~nI~L~dGkSL~~C~ 803 (1282)
..|+.+.| | +++|||++||.++|....+.|..-+..+|.+|...+
T Consensus 20 ~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~~g~~Lr~L~ 67 (73)
T smart00258 20 KCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRCGGSSLRTLM 67 (73)
T ss_pred hcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeECCccHHHHH
Confidence 33554444 4 589999999999999888889888889999986543
No 136
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=83.23 E-value=0.62 Score=58.22 Aligned_cols=39 Identities=26% Similarity=0.806 Sum_probs=33.0
Q ss_pred cccCCceeecCc--cccccccccccCCCcchhccCCCCCcccCCcchh
Q 000791 891 DVVDGSVLICHQ--CELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 891 ~~~~g~Ll~Cdq--Cer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~ 936 (1282)
+..++.|+.||. |.-+.|..|.. +..+|.+.|||- +|+.
T Consensus 16 GWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfCr-KCes 56 (900)
T KOG0956|consen 16 GWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFCR-KCES 56 (900)
T ss_pred CCccCceeeecCCCceeeeehhcce------eEecCCCchhhh-hhhh
Confidence 455688999996 99999999987 568999999997 4875
No 137
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=82.70 E-value=2.1 Score=40.86 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEeCCCceEEEEeCCCC-CeEEEccCCCccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLEDGSAERRIFFPDLG-DEMTVGIDSLRIT 161 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~~g~~~y~V~Fpgeg-del~f~~~dLRp~ 161 (1282)
|.+||.|=|=..+ -||.|+|.++..+..+|.|+|-|++ ..-....++|-|.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~~~k~~V~FfG~~~~~a~~~~~~l~p~ 53 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRKKQKARVNFIGDNMQSEKKGIRVVKRW 53 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCCCCEEEEEEeCCCCceeccchhhcccc
Confidence 5689998887666 8999999998766668999999988 4444555555443
No 138
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=82.61 E-value=0.62 Score=56.31 Aligned_cols=32 Identities=25% Similarity=0.773 Sum_probs=28.0
Q ss_pred CceeecCccccccccccccCCCcchhccCCCCCcccCC
Q 000791 895 GSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSK 932 (1282)
Q Consensus 895 g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~ 932 (1282)
+.+++|+.|+-..|..|... .-+|+|.|+|-+
T Consensus 208 naiVfCdgC~i~VHq~CYGI------~f~peG~WlCrk 239 (669)
T COG5141 208 NAIVFCDGCEICVHQSCYGI------QFLPEGFWLCRK 239 (669)
T ss_pred ceEEEecCcchhhhhhcccc------eecCcchhhhhh
Confidence 66999999999999999874 568999999965
No 139
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=80.40 E-value=2.9 Score=39.65 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=44.8
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEeCC---------CceEEEEeCCCCCeEEEccCCCccccccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLEDG---------SAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~~g---------~~~y~V~Fpgegdel~f~~~dLRp~~dW~ 165 (1282)
|++||.|=|=..+ .||.|+|.+.... ...|.|+|-|+.+..-+..++|+|-.+-.
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~ 65 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHK 65 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchH
Confidence 5789999888888 9999999986432 13699999998888888888888877665
No 140
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=79.60 E-value=0.59 Score=38.11 Aligned_cols=32 Identities=22% Similarity=0.812 Sum_probs=17.1
Q ss_pred CceeecCccccccccccccCCCcchhccCCCC-CcccCC
Q 000791 895 GSVLICHQCELKYHRKCLQNGATDKLKTHAKE-TWFCSK 932 (1282)
Q Consensus 895 g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~-~WfCs~ 932 (1282)
+.++.|+.|.-..|..|.... ..+.+ .|+|..
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~------~~~~~~~W~C~~ 34 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS------EVPDGDDWLCDR 34 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S------S--SS-----HH
T ss_pred CceEEeCCCCCcCChhhCCcc------cCCCCCcEECCc
Confidence 358999999999999999854 33433 699964
No 141
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=78.01 E-value=3.6 Score=39.38 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=46.5
Q ss_pred CCCCCCEEEeecCC-CEEEEEEEEEeCC---CceEEEEeCCCCCeEEEccCCCccccccc
Q 000791 110 SLPFGLCVDVYYNE-AWWEGVIFDLEDG---SAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 110 ~~~vGD~VDa~~~d-gWWeGvV~~v~~g---~~~y~V~Fpgegdel~f~~~dLRp~~dW~ 165 (1282)
.|.+||.|=|=..| -||.|.|.+.... ...|.|+|-|+++.--+..++|-|-.+..
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~ 61 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTENK 61 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCEeEECHHHceecccch
Confidence 58899999888777 9999999997531 34799999999998888888888877654
No 142
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=77.33 E-value=1.7 Score=42.79 Aligned_cols=69 Identities=26% Similarity=0.633 Sum_probs=44.3
Q ss_pred cccccCCCCceeecCCCCCccccCCCC-CC----------------CCCCCCCccCCCCcccCCCCCCCCccccccCCce
Q 000791 835 KCSVCHFGGELLLCDRCPSSFHRNCVG-LE----------------DVPDGDWFCPSCCCSICGNSNSREEVEDVVDGSV 897 (1282)
Q Consensus 835 ~C~vC~dgGeLL~CD~Cp~afH~~CL~-L~----------------~vP~g~W~C~~C~C~iCgk~~~~~~~~~~~~g~L 897 (1282)
.|.+|...|..+.-..-..-.|..|.- .. .++...| .=.|.+|++.. |..
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~---~~~C~iC~~~~----------G~~ 68 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRF---KLKCSICGKSG----------GAC 68 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhc---CCcCcCCCCCC----------cee
Confidence 378887765544444456677888874 11 1111111 11277887752 668
Q ss_pred eecCc--cccccccccccCCC
Q 000791 898 LICHQ--CELKYHRKCLQNGA 916 (1282)
Q Consensus 898 l~Cdq--Cer~YH~~CL~~~~ 916 (1282)
+.|.. |...||+.|....+
T Consensus 69 i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 69 IKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred EEcCCCCCCcCCCHHHHHHCC
Confidence 99999 99999999998765
No 143
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=75.79 E-value=2.1 Score=52.69 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=35.6
Q ss_pred cCCCcccccccCCCCceeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 000791 829 QGENDYKCSVCHFGGELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1282)
Q Consensus 829 ~~~ndd~C~vC~dgGeLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~ 876 (1282)
...+.++|.+|.+||.+++|+.|..++|..|... ..++..|.|..|.
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~ 131 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCR 131 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCccee
Confidence 4556788999999999999998888778888743 2555566666554
No 144
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=75.64 E-value=4.8 Score=36.26 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=41.1
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEeCC----------CceEEEEeCCCCCeEEEccCCCcc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLEDG----------SAERRIFFPDLGDEMTVGIDSLRI 160 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~~g----------~~~y~V~Fpgegdel~f~~~dLRp 160 (1282)
|++||.|=|=..+ -||.|.|+..... ...|.|.|-|+++..-+..++|.|
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p 61 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFP 61 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceee
Confidence 5689999988888 9999999885321 236999999999998889988876
No 145
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=75.43 E-value=0.86 Score=54.59 Aligned_cols=76 Identities=21% Similarity=0.552 Sum_probs=43.4
Q ss_pred cccccCCC--CceeecCCCCCccccCCCC-------CCCCC-----CCCCccCCCC-------cccCCCCCCCCcccccc
Q 000791 835 KCSVCHFG--GELLLCDRCPSSFHRNCVG-------LEDVP-----DGDWFCPSCC-------CSICGNSNSREEVEDVV 893 (1282)
Q Consensus 835 ~C~vC~dg--GeLL~CD~Cp~afH~~CL~-------L~~vP-----~g~W~C~~C~-------C~iCgk~~~~~~~~~~~ 893 (1282)
.|.+|+.. +.+| -.|.++||..|.. |..+| ++.-||-.|- |.+|+++....+..
T Consensus 336 kC~~Cg~~I~d~iL--rA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~--- 410 (468)
T KOG1701|consen 336 KCNKCGEPIMDRIL--RALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGK--- 410 (468)
T ss_pred HHhhhhhHHHHHHH--HhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCC---
Confidence 37777542 1222 3578889988874 33332 2346787663 99999986533211
Q ss_pred CCceeecCccccccccccccCCC
Q 000791 894 DGSVLICHQCELKYHRKCLQNGA 916 (1282)
Q Consensus 894 ~g~Ll~CdqCer~YH~~CL~~~~ 916 (1282)
.+.+.---=+|-||+.|..-.+
T Consensus 411 -~etvRvvamdr~fHv~CY~CED 432 (468)
T KOG1701|consen 411 -DETVRVVAMDRDFHVNCYKCED 432 (468)
T ss_pred -cceEEEEEccccccccceehhh
Confidence 1112222236788888876543
No 146
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=74.84 E-value=1.7 Score=52.62 Aligned_cols=41 Identities=27% Similarity=0.612 Sum_probs=32.3
Q ss_pred CCccCCCCcccCCCCCCCCccccccCCceeecCccccccccccccC
Q 000791 869 DWFCPSCCCSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQN 914 (1282)
Q Consensus 869 ~W~C~~C~C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~ 914 (1282)
+-||..|.|.+|++.+... .+-..+.|+-|..|.|..|.=.
T Consensus 123 ~gFC~~C~C~iC~kfD~~~-----n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 123 PGFCRRCMCCICSKFDDNK-----NTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CCccccCCccccCCcccCC-----CCeeEEeccCCCceehhhhhcc
Confidence 3589999999998865432 2345799999999999999644
No 147
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=73.24 E-value=6 Score=39.21 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=39.8
Q ss_pred EeCCEEEEEEEEEEec--CceEEEeeeeeecCcccCChhHHHHHHHHHHH
Q 000791 1031 ERNEELVTVATVRIFG--EKAAEIPLVGTRFQYRRLGMCRILMNELEKRL 1078 (1282)
Q Consensus 1031 ~~~~e~VsaA~lri~g--~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l 1078 (1282)
|.++...++|.+..-+ .+++.|-.+|+.++.||+|+++.|+++|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4556677888876544 58999999999999999999999999987663
No 148
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=73.01 E-value=5.3 Score=38.44 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=44.3
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEe-------CCCceEEEEeCCCCCeEEEccCCCccccccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLE-------DGSAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~-------~g~~~y~V~Fpgegdel~f~~~dLRp~~dW~ 165 (1282)
|++||.|=|=..+ -||.|.|.+.. .....|.|+|-|+++.--+..++|.|-.+..
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~~wv~~~~l~pF~~~~ 63 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENHAWIKEENIKPYHEHK 63 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCEEEECHHhCeechhhH
Confidence 5789999887777 99999998731 1113599999999998888999999888775
No 149
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=72.78 E-value=12 Score=40.14 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=53.5
Q ss_pred CcCcCccEEEEEEe--CCEEEE-----EEEEEEecC--ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEE
Q 000791 1019 RLNFQGFYTVLLER--NEELVT-----VATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLI 1087 (1282)
Q Consensus 1019 Rl~f~Gfy~~VL~~--~~e~Vs-----aA~lri~g~--~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~Lv 1087 (1282)
...|.-.||+.+.. ++++|| -+.+|+.+. ..+||=++++++.+|.+++.=.|+.+|=+.+...|+-.-+
T Consensus 71 pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 71 PPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp STT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred CcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 34566678888865 589988 577899886 7799999999999999999999999999998887765433
No 150
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=72.65 E-value=1 Score=43.08 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=31.3
Q ss_pred CceEeCCCCCeeeccceeeccCCCccCCCceEEccCCcchhhhh
Q 000791 760 DGIKCKCCGKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQ 803 (1282)
Q Consensus 760 dGI~C~CC~k~fS~S~FE~HAG~~~~~P~~nI~L~dGkSL~~C~ 803 (1282)
..|.|. +.+|||++||.|+|....+.|..-+...|.+|...+
T Consensus 35 kCI~~~--g~~~TP~eFE~~~G~~~sK~WK~SIr~~g~~L~~li 76 (82)
T PF01342_consen 35 KCIQCE--GRWFTPSEFERHGGKGSSKDWKRSIRCGGEPLGKLI 76 (82)
T ss_dssp S-EEET--TEEE-HHHHHHHHTTCTCS-HHHHSEETTEEHHHHH
T ss_pred ceEeeC--CcEECHHHHHhhcCcccCCCCCccEEECCEEHHHHH
Confidence 345554 899999999999999887778877777999986543
No 151
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=71.42 E-value=12 Score=33.70 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=28.5
Q ss_pred CCCCCCCCCEEEEEeCCCCccceEEEEEEEEecC-CCce-EEeCC
Q 000791 18 GQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSS-DCRT-VKYDH 60 (1282)
Q Consensus 18 ~~~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~-~~~y-VeY~d 60 (1282)
+.++|..|+.|.++=-.+ ..||.|+|++.+. .+.| |.|.|
T Consensus 2 p~~k~~~Ge~V~~rWP~s---~lYYe~kV~~~d~~~~~y~V~Y~D 43 (55)
T PF09465_consen 2 PSRKFAIGEVVMVRWPGS---SLYYEGKVLSYDSKSDRYTVLYED 43 (55)
T ss_dssp SSSSS-SS-EEEEE-TTT---S-EEEEEEEEEETTTTEEEEEETT
T ss_pred CcccccCCCEEEEECCCC---CcEEEEEEEEecccCceEEEEEcC
Confidence 458899999999995443 3699999999764 4455 99986
No 152
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=67.50 E-value=16 Score=42.49 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=62.4
Q ss_pred EEEEE-eCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHh--hhcccC
Q 000791 1027 TVLLE-RNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKT--WTTSFG 1103 (1282)
Q Consensus 1027 ~~VL~-~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~f--wt~kfG 1103 (1282)
.++++ .+|++||++.+..++. .+.....|+.+++|+.+-.-.|+-.+.+.+++.|++.+-+.....-.+. ++.+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 6889998888755544 4455688899999999999999999999999999999999765432233 445788
Q ss_pred eEEcCH
Q 000791 1104 FKRMTA 1109 (1282)
Q Consensus 1104 F~~v~~ 1109 (1282)
|++..-
T Consensus 276 ~~~~~l 281 (330)
T TIGR03019 276 FEPQPL 281 (330)
T ss_pred Ceeccc
Confidence 886543
No 153
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=66.62 E-value=6.3 Score=46.45 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=42.0
Q ss_pred cCcccCChhHHHHHHHHHHHHHc-CccEEEecCccchhHhhhcccCeEEcCHH
Q 000791 1059 FQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIPTVLKTWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1059 ~~yRgqGmgr~Lm~aIE~~l~~l-gV~~LvLpA~~~a~~fwt~kfGF~~v~~~ 1110 (1282)
..||.||+|..||++.|+.+++. |-.++-+=+..-....|. ||||..-++-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecChh
Confidence 35899999999999999999864 555777667777888898 9999987763
No 154
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.44 E-value=4 Score=36.42 Aligned_cols=37 Identities=27% Similarity=0.916 Sum_probs=28.9
Q ss_pred CCCcccCCCCCCCCccccccCCceeecCccccccccccccCCCc
Q 000791 874 SCCCSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGAT 917 (1282)
Q Consensus 874 ~C~C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~ 917 (1282)
.++|.+||+.... .+.++.|..|...||..|....+.
T Consensus 5 ~~~C~~Cg~~~~~-------~dDiVvCp~CgapyHR~C~~~~g~ 41 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-------GDDIVVCPECGAPYHRDCWEKAGG 41 (54)
T ss_pred CccChhhCCcccC-------CCCEEECCCCCCcccHHHHhhCCc
Confidence 4568999987642 245899999999999999876553
No 155
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=65.66 E-value=7.3 Score=36.64 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=32.5
Q ss_pred hhcCceEEeecCCCC----CcceeeeCCCCcccchHHHHHHHH
Q 000791 555 SAIGWVFKYKIGPNA----KRNLYHFSPGGKSYFSLRSACRAC 593 (1282)
Q Consensus 555 ~~~GW~~~~~~~~~~----~~~~~y~sP~g~~y~sl~~ac~~~ 593 (1282)
+-.||+-+...+++| +.+..|+||.|+.+-|....=+-+
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL 53 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL 53 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH
Confidence 457999999988876 568999999999999998877665
No 156
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=63.68 E-value=31 Score=35.72 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=56.7
Q ss_pred EEeCCEEEEEEEEEEe--c-----CceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhccc
Q 000791 1030 LERNEELVTVATVRIF--G-----EKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSF 1102 (1282)
Q Consensus 1030 L~~~~e~VsaA~lri~--g-----~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kf 1102 (1282)
...+|-+||-|.+--. . -.++|+ =+..-|||+||||+-.++|-.+.+. -.+-.+++--..|..||+ ++
T Consensus 42 ~~~~~~~igf~l~L~~~~~~~~iD~~~~ef---FIi~k~~~~GvGR~aaK~If~~~~g-~w~Va~i~EN~PA~~fwK-~~ 116 (143)
T COG5628 42 FRIGGLPVGFALVLDLAHSPTPIDRAVAEF---FIVRKHRRRGVGRAAAKAIFGSAWG-VWQVATVRENTPARAFWK-RV 116 (143)
T ss_pred EEECCceeeeeeeecccCCCCcccccchhe---EeeehhhccchhHHHHHHHHHHhhc-eEEEEEeccCChhHHHHH-hh
Confidence 3568889998876322 1 123333 3456799999999999999988654 356678888889999999 77
Q ss_pred CeEE-cCHHHHHhhc
Q 000791 1103 GFKR-MTASERVQLV 1116 (1282)
Q Consensus 1103 GF~~-v~~~~l~~~~ 1116 (1282)
-+.. +..+++...+
T Consensus 117 ~~t~~i~~E~r~d~~ 131 (143)
T COG5628 117 AETYPVVEEDRQDAR 131 (143)
T ss_pred hcccccchhhhhccc
Confidence 6644 4444444443
No 157
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=63.46 E-value=8.9 Score=47.05 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=41.9
Q ss_pred cCCCCCCCCCEEEEEeCCCCccceEEEEEEEEecCC--------CceEEeCCccCCCCCCCceEEEEcccc
Q 000791 17 CGQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSD--------CRTVKYDHLLTDAGDDNLVDIVCVSSI 79 (1282)
Q Consensus 17 ~~~~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~--------~~yVeY~dL~deDgs~~L~E~V~~s~~ 79 (1282)
.....|.+|++|=+... .-|.|+.|+||+.... .+||-|..+ ...|-|||..+++
T Consensus 49 ~~~~~~~VGekVla~~~---~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~-----nrRlDEWV~~~rL 111 (450)
T PLN00104 49 GVMLPLEVGTRVMCRWR---FDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEF-----NRRLDEWVKLEQL 111 (450)
T ss_pred CccceeccCCEEEEEEC---CCCCEEEEEEEEEeccCCCCCCCceEEEEEecC-----CccHhhccCHhhc
Confidence 34567999999999963 3478999999998642 255999877 3468899998653
No 158
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=61.94 E-value=9.8 Score=41.32 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=45.0
Q ss_pred eEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCccchhHhhhcccC
Q 000791 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAIPTVLKTWTTSFG 1103 (1282)
Q Consensus 1049 ~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~~~a~~fwt~kfG 1103 (1282)
+||+.+.|++++.+|.|+++.+ .++--.|++|||.--+--....+...++ +|+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~-R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE-RLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH-HHh
Confidence 6999999999999999999965 6899999999999887777777777777 443
No 159
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=61.51 E-value=19 Score=37.71 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=53.7
Q ss_pred cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEecCc----cchhHhhhcccCeEEcCHHHHHhhc
Q 000791 1046 GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLILPAI----PTVLKTWTTSFGFKRMTASERVQLV 1116 (1282)
Q Consensus 1046 g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvLpA~----~~a~~fwt~kfGF~~v~~~~l~~~~ 1116 (1282)
=+.+.-|-||-|-...||.|.+|+|-+.+-+.+..-|..+|++-.- ..|.......|||+.+++.+...+.
T Consensus 81 Ye~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihggk 155 (167)
T COG3818 81 YENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHGGK 155 (167)
T ss_pred CCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEecch
Confidence 3455566777777788999999999999999999999998886332 2344444559999999987554443
No 160
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=61.49 E-value=21 Score=34.19 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=32.9
Q ss_pred CCCCCCCCCEEEEEeCCCCccceEEEEEEE-EecCCCceEEeCCccCCCCCCCceEEEEcc
Q 000791 18 GQRKLPVGERVEVRSDEDGFLGSWHAGTVI-ASSSDCRTVKYDHLLTDAGDDNLVDIVCVS 77 (1282)
Q Consensus 18 ~~~~FkvGd~VEV~S~eeG~rGsWF~AtVI-~~~~~~~yVeY~dL~deDgs~~L~E~V~~s 77 (1282)
......+|..+=+....+| .||||+|. ...+....|.|-|+- ..++|..+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~---~w~Ra~I~~~~~~~~~~V~~iD~G-------~~~~v~~~ 98 (121)
T PF00567_consen 48 PSPESNPGEGCLCVVSEDG---RWYRAVITVDIDENQYKVFLIDYG-------NTEKVSAS 98 (121)
T ss_dssp TCST--TTEEEEEEETTTS---EEEEEEEEEEECTTEEEEEETTTT-------EEEEEEGG
T ss_pred CccccccCCEEEEEEecCC---ceeeEEEEEecccceeEEEEEecC-------ceEEEcHH
Confidence 3456667777777766555 99999993 434444459999882 46778764
No 161
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=60.61 E-value=19 Score=31.71 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=30.8
Q ss_pred CCCCCEEEeec-CCCEEEEEEEEEeC--CCceEEEEeCCCCC
Q 000791 111 LPFGLCVDVYY-NEAWWEGVIFDLED--GSAERRIFFPDLGD 149 (1282)
Q Consensus 111 ~~vGD~VDa~~-~dgWWeGvV~~v~~--g~~~y~V~Fpgegd 149 (1282)
|++|+.|-+.+ ++-|.++.|+++.. +..+|.|.|.|-+.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nk 42 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNK 42 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTG
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCC
Confidence 57899999999 99999999999743 23479999998553
No 162
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=60.54 E-value=14 Score=39.35 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=40.7
Q ss_pred eEEEeeeeeecCcccCChhHHHHHHHHHHHHHc-CccEEEecCccc---hhHhhhcccCeEEc
Q 000791 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMEL-GVEKLILPAIPT---VLKTWTTSFGFKRM 1107 (1282)
Q Consensus 1049 ~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~l-gV~~LvLpA~~~---a~~fwt~kfGF~~v 1107 (1282)
++|+..+-.-|..||+|+|+..|.++..++.+. ++-+..+....+ .+.+.. ||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheee
Confidence 356677777799999999999999999987653 555555444322 344555 7888654
No 163
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.07 E-value=4.6 Score=36.07 Aligned_cols=28 Identities=36% Similarity=1.062 Sum_probs=24.4
Q ss_pred ccccccCC----CCceeecCCCCCccccCCCC
Q 000791 834 YKCSVCHF----GGELLLCDRCPSSFHRNCVG 861 (1282)
Q Consensus 834 d~C~vC~d----gGeLL~CD~Cp~afH~~CL~ 861 (1282)
..|.+|+. +++++.|..|...||..|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 35999986 67899999999999999983
No 164
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=58.35 E-value=15 Score=35.74 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=36.4
Q ss_pred CCcCcCccEEEEEEeCCE-EEEEEEEEEe-----------------------cCceEEEeeeeeecCcccCChhHHHH
Q 000791 1018 NRLNFQGFYTVLLERNEE-LVTVATVRIF-----------------------GEKAAEIPLVGTRFQYRRLGMCRILM 1071 (1282)
Q Consensus 1018 ~Rl~f~Gfy~~VL~~~~e-~VsaA~lri~-----------------------g~~~AEIp~VAT~~~yRgqGmgr~Lm 1071 (1282)
.++| ....|+++..+++ +|||.||... ...++||-|+|+.++||+...-..|.
T Consensus 24 D~fD-~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 24 DEFD-EHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cCCC-CCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3444 3345666666555 9888886432 23678999999999999987766553
No 165
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=58.25 E-value=15 Score=36.42 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=36.6
Q ss_pred EeCCEEEEEEEEEEec-CceEEEeeeeeecCcccCChhHHHHHHHHHHH
Q 000791 1031 ERNEELVTVATVRIFG-EKAAEIPLVGTRFQYRRLGMCRILMNELEKRL 1078 (1282)
Q Consensus 1031 ~~~~e~VsaA~lri~g-~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l 1078 (1282)
|.++..=++|.+..-. .+++.|-.+|+.++.||+|+++.|+++|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3344444566654433 47899999999999999999999999988664
No 166
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=58.08 E-value=15 Score=35.43 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=43.3
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEEeCCCceEEEEeCC-CCCeEEEccCCCccccccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDLEDGSAERRIFFPD-LGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v~~g~~~y~V~Fpg-egdel~f~~~dLRp~~dW~ 165 (1282)
...||.|=|=..| -||.+.|.+..+ +.|.|+|-| +.+..-+..++|.|-.+-.
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~~~--~~~~V~FFG~t~~~a~v~~~~i~~~~~~~ 61 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRVED--NQVDVRFFGGQHDRAWIPSNNIQPISTEI 61 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeecCC--CeEEEEEcCCCCCeEEEehHHeeehhhhh
Confidence 3458888888887 999999999864 469999998 9998888888888876654
No 167
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=57.37 E-value=39 Score=37.35 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=48.5
Q ss_pred hhhhhhHHHhhhcccccccCCCchhhHHHHHhhccCCCCCcCcCccEEEEEEeCC--EEEEEEEEEEecCceEEEeeeee
Q 000791 980 SKLNIAHRVMHECFEPVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERNE--ELVTVATVRIFGEKAAEIPLVGT 1057 (1282)
Q Consensus 980 SkLa~AL~Vm~EcF~Pi~D~rTg~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~~~--e~VsaA~lri~g~~~AEIp~VAT 1057 (1282)
....+.|-.+-..|..-+-- +-..+.--||.+...+++ .+||-=+=--...+---+--|-|
T Consensus 26 ~~yCqnLcLlaKLFLd~Ktl-----------------yydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFLDHKTL-----------------YYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT-SSGCC-----------------TT-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHHhhCeEE-----------------EeecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 35777777777788765521 112222334554444444 34443331111222346777899
Q ss_pred ecCcccCChhHHHHHHHHHHHHHcC
Q 000791 1058 RFQYRRLGMCRILMNELEKRLMELG 1082 (1282)
Q Consensus 1058 ~~~yRgqGmgr~Lm~aIE~~l~~lg 1082 (1282)
.|.||++|+|+.|++.-=.+.+.-|
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhcchhhhhhhhHHHHhhccC
Confidence 9999999999999988666655543
No 168
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=57.08 E-value=16 Score=35.76 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=41.6
Q ss_pred CCCCCEEEeecCC-CEEEEEEEEE-------e-----CCCceEEEEeCCCCCeEEEccCCCcccc
Q 000791 111 LPFGLCVDVYYNE-AWWEGVIFDL-------E-----DGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1282)
Q Consensus 111 ~~vGD~VDa~~~d-gWWeGvV~~v-------~-----~g~~~y~V~Fpgegdel~f~~~dLRp~~ 162 (1282)
|++||.|=|=..| -||.|+|+.- + .+...|.|.|-|+++..-+...+|.|-.
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~ 65 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLT 65 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCCcEEEEChhhcccCC
Confidence 5789999888877 8999999872 1 1224699999999988888999998877
No 169
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=57.06 E-value=11 Score=35.70 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=32.8
Q ss_pred hhcCceEEeecCCCC---CcceeeeCCCCcccchHHHHHHHH
Q 000791 555 SAIGWVFKYKIGPNA---KRNLYHFSPGGKSYFSLRSACRAC 593 (1282)
Q Consensus 555 ~~~GW~~~~~~~~~~---~~~~~y~sP~g~~y~sl~~ac~~~ 593 (1282)
+-.||+-+..+++++ +.+..|+||.|+.+-|+..+=+-+
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL 48 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYL 48 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHH
Confidence 347999999999984 668999999999999988776655
No 170
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=56.55 E-value=14 Score=35.42 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=39.1
Q ss_pred CCCEEEeecCCCEEEEEEEEEeCCCceEEEEeCCCCCeEEEccCCCccccc
Q 000791 113 FGLCVDVYYNEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQD 163 (1282)
Q Consensus 113 vGD~VDa~~~dgWWeGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp~~d 163 (1282)
.+..+=+..+++|.-|+|....+ ...+.|+|-+.|....+..++||+--.
T Consensus 56 ~~~~~~~~~~~~w~Ra~I~~~~~-~~~~~V~~iD~G~~~~v~~~~l~~l~~ 105 (121)
T PF00567_consen 56 EGCLCVVSEDGRWYRAVITVDID-ENQYKVFLIDYGNTEKVSASDLRPLPP 105 (121)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEC-TTEEEEEETTTTEEEEEEGGGEEE--H
T ss_pred CEEEEEEecCCceeeEEEEEecc-cceeEEEEEecCceEEEcHHHhhhhCH
Confidence 45577777899999999944333 347999999999999999999997653
No 171
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.55 E-value=5.3 Score=48.49 Aligned_cols=66 Identities=30% Similarity=0.550 Sum_probs=42.1
Q ss_pred CcccccccCCCC----ceeecCCCCCccccCCCCCCCCCCCCCccCCCC------------cccCCCCCCCCccccccCC
Q 000791 832 NDYKCSVCHFGG----ELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC------------CSICGNSNSREEVEDVVDG 895 (1282)
Q Consensus 832 ndd~C~vC~dgG----eLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~------------C~iCgk~~~~~~~~~~~~g 895 (1282)
.-..|.||...- ..|+--.|..+||..|+.. -++-.||-|+ |..|+.. .
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~----w~~~scpvcR~~q~p~~ve~~~c~~c~~~-----------~ 238 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMK----WWDSSCPVCRYCQSPSVVESSLCLACGCT-----------E 238 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhh----cccCcChhhhhhcCcchhhhhhhhhhccc-----------c
Confidence 345799997532 3566677899999999942 2233577765 4445433 2
Q ss_pred ceeecCccccccccccccCC
Q 000791 896 SVLICHQCELKYHRKCLQNG 915 (1282)
Q Consensus 896 ~Ll~CdqCer~YH~~CL~~~ 915 (1282)
.+..|--|+ |++|-++.
T Consensus 239 ~LwicliCg---~vgcgrY~ 255 (493)
T KOG0804|consen 239 DLWICLICG---NVGCGRYK 255 (493)
T ss_pred cEEEEEEcc---ceeccccc
Confidence 377777776 56676654
No 172
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=52.92 E-value=8 Score=36.58 Aligned_cols=46 Identities=28% Similarity=0.681 Sum_probs=31.3
Q ss_pred CcccCCCCCCCCccccccCCceeecCc--cccccccccccCCCcchhccC---CCCCcccCC
Q 000791 876 CCSICGNSNSREEVEDVVDGSVLICHQ--CELKYHRKCLQNGATDKLKTH---AKETWFCSK 932 (1282)
Q Consensus 876 ~C~iCgk~~~~~~~~~~~~g~Ll~Cdq--Cer~YH~~CL~~~~~~~L~e~---p~~~WfCs~ 932 (1282)
.|.+|++.. |..+.|.. |.+.||..|....+.. +... .....||++
T Consensus 38 ~C~~C~~~~----------Ga~i~C~~~~C~~~fH~~CA~~~~~~-~~~~~~~~~~~~~C~~ 88 (90)
T PF13771_consen 38 KCSICKKKG----------GACIGCSHPGCSRSFHVPCARKAGCF-IEFDEDNGKFRIFCPK 88 (90)
T ss_pred CCcCCCCCC----------CeEEEEeCCCCCcEEChHHHccCCeE-EEEccCCCceEEEChh
Confidence 377887652 55889997 9999999999887633 2221 234566654
No 173
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=52.42 E-value=9.4 Score=41.25 Aligned_cols=35 Identities=20% Similarity=0.665 Sum_probs=26.4
Q ss_pred CCceeecCccccccccccccCCCcch--hccCCCCCc
Q 000791 894 DGSVLICHQCELKYHRKCLQNGATDK--LKTHAKETW 928 (1282)
Q Consensus 894 ~g~Ll~CdqCer~YH~~CL~~~~~~~--L~e~p~~~W 928 (1282)
.|.|+.|..|..+||..||.+...-. ..++..+.|
T Consensus 14 kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~F 50 (175)
T PF15446_consen 14 KGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDF 50 (175)
T ss_pred CCCeEEcCccChHHHhhhcCCccccceeeEEEcCCce
Confidence 47899999999999999999876321 445555544
No 174
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=52.24 E-value=2.7 Score=55.49 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=39.7
Q ss_pred CcccccccCCCCceeecCC-CCCcccc-CCCC----CCCCCCCCCccCCCC
Q 000791 832 NDYKCSVCHFGGELLLCDR-CPSSFHR-NCVG----LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 832 ndd~C~vC~dgGeLL~CD~-Cp~afH~-~CL~----L~~vP~g~W~C~~C~ 876 (1282)
+.+.|.+|+..+.++||+. ||..||. .||+ -..++++-|+|++|.
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~ 477 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEI 477 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHH
Confidence 4456999999999999998 9999998 9998 357899999999985
No 175
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=52.15 E-value=10 Score=35.51 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred EEeeeeeecCcccCChhHHHHHHHHHH
Q 000791 1051 EIPLVGTRFQYRRLGMCRILMNELEKR 1077 (1282)
Q Consensus 1051 EIp~VAT~~~yRgqGmgr~Lm~aIE~~ 1077 (1282)
-|.+|=|.+.+|++|++++||+++-+.
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 467788899999999999999988765
No 176
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=51.96 E-value=44 Score=38.53 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=35.6
Q ss_pred cCCCCCCCCCEEEEEeCCCCccceEEEEEEEEecCCC--ceEEeCCccCCCCCCCceEEEEcc
Q 000791 17 CGQRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDC--RTVKYDHLLTDAGDDNLVDIVCVS 77 (1282)
Q Consensus 17 ~~~~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~--~yVeY~dL~deDgs~~L~E~V~~s 77 (1282)
.+...++|||+....--++| .||+|+|.++.... +.|.|..+-+ .|.|.++
T Consensus 64 ~~~~~WkvGd~C~A~~s~Dg---~~Y~A~I~~i~~~~~~~~V~f~gYgn-------~e~v~l~ 116 (264)
T PF06003_consen 64 APNKKWKVGDKCMAVYSEDG---QYYPATIESIDEEDGTCVVVFTGYGN-------EEEVNLS 116 (264)
T ss_dssp TTTT---TT-EEEEE-TTTS---SEEEEEEEEEETTTTEEEEEETTTTE-------EEEEEGG
T ss_pred CcccCCCCCCEEEEEECCCC---CEEEEEEEEEcCCCCEEEEEEcccCC-------eEeeehh
Confidence 34678999999999977776 59999999998653 4599998832 4778764
No 177
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=50.55 E-value=24 Score=33.28 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=34.1
Q ss_pred hhcccEEEEeeCCCC----cceeeeeCCCCceeehHHHHHHhhcccc
Q 000791 434 KHQNWKLECTRDEKG----TLRQRYISPDGKCYHSLRQVCLDLTETT 476 (1282)
Q Consensus 434 ~~~gw~i~~~~~~~~----~~r~ry~sp~gk~y~sl~~~~~~~~~~~ 476 (1282)
+--||+.|...-..| ..=--|.||.||.+.|..+|..=|....
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~ 57 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENP 57 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTTSS
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHhCC
Confidence 456999998855554 4556799999999999999999988754
No 178
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=50.04 E-value=72 Score=33.19 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=53.5
Q ss_pred ccEEEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEe
Q 000791 1024 GFYTVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1282)
Q Consensus 1024 Gfy~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvL 1088 (1282)
|=+++-.+.+|++||+|.+.+..+.+.-|=.+ =+|++...++|...+-.-.+.++++|.+.+-|
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~f-yDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTF-YDPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeee-eCCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 44667778999999999999888777655554 37889999999998888888999999999988
No 179
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=49.72 E-value=32 Score=40.16 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=38.0
Q ss_pred CcCccEEEEEEeC----CEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcC
Q 000791 1021 NFQGFYTVLLERN----EELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG 1082 (1282)
Q Consensus 1021 ~f~Gfy~~VL~~~----~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg 1082 (1282)
|...|..+||... ..+||-=+==-...+---+--|-|.|.||++|+|+.|++.-=++.+.-|
T Consensus 123 DV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 123 DVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 3445555555532 3566533311111112346678899999999999999988766665544
No 180
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=48.59 E-value=27 Score=31.52 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=33.4
Q ss_pred hcCceEEeecCCCC---CcceeeeCCCCcccchHHHHHHHHhcc
Q 000791 556 AIGWVFKYKIGPNA---KRNLYHFSPGGKSYFSLRSACRACLNG 596 (1282)
Q Consensus 556 ~~GW~~~~~~~~~~---~~~~~y~sP~g~~y~sl~~ac~~~~~~ 596 (1282)
-.||+-+..+++++ +.+..|+||.|+.+-|+...=+-+.++
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhC
Confidence 47999999888874 668999999999998888776666443
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=46.08 E-value=24 Score=45.99 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=30.7
Q ss_pred CCCCCCCEEEeecCCC------EEEEEEEEEeCCC--------ceEEEEeCCC
Q 000791 109 CSLPFGLCVDVYYNEA------WWEGVIFDLEDGS--------AERRIFFPDL 147 (1282)
Q Consensus 109 ~~~~vGD~VDa~~~dg------WWeGvV~~v~~g~--------~~y~V~Fpge 147 (1282)
.+|..+|.--|||.|+ ||+|.|..+...+ +.|.|....+
T Consensus 977 rnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~ 1029 (1113)
T KOG0644|consen 977 RNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNT 1029 (1113)
T ss_pred hccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCC
Confidence 5899999999999998 9999999985433 3466666543
No 182
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=44.89 E-value=9.6 Score=38.17 Aligned_cols=36 Identities=33% Similarity=0.940 Sum_probs=23.9
Q ss_pred CCCCCccccCCCC------C-CCCCCCCCccCCCC----cccCCCCC
Q 000791 849 DRCPSSFHRNCVG------L-EDVPDGDWFCPSCC----CSICGNSN 884 (1282)
Q Consensus 849 D~Cp~afH~~CL~------L-~~vP~g~W~C~~C~----C~iCgk~~ 884 (1282)
..|...|-..||- + +.+.++.|.||.|+ |..|.+..
T Consensus 34 ~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~ 80 (105)
T PF10497_consen 34 RGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKR 80 (105)
T ss_pred ccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccC
Confidence 3346667677764 2 23456789999987 77776654
No 183
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=43.67 E-value=32 Score=32.69 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=32.7
Q ss_pred hcccEEEEeeCCCC-cce--eeeeCCCCceeehHHHHHHhhccc
Q 000791 435 HQNWKLECTRDEKG-TLR--QRYISPDGKCYHSLRQVCLDLTET 475 (1282)
Q Consensus 435 ~~gw~i~~~~~~~~-~~r--~ry~sp~gk~y~sl~~~~~~~~~~ 475 (1282)
--||+-|...-..| ..+ --|.||.||..-|..||.+-|+..
T Consensus 8 p~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 8 PPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhC
Confidence 36999887766654 333 449999999999999999999885
No 184
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=41.12 E-value=69 Score=29.70 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=33.6
Q ss_pred EEEEEeCCCCccceEEEEEEEEecCCCceEEeCCccCCCCCCCceEEEEcc
Q 000791 27 RVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVDIVCVS 77 (1282)
Q Consensus 27 ~VEV~S~eeG~rGsWF~AtVI~~~~~~~yVeY~dL~deDgs~~L~E~V~~s 77 (1282)
++|+....+. ..+..|||+++.+....|+|+...++. ..|++..
T Consensus 2 kLEa~d~~~~--~~~~vAtV~~v~g~~l~v~~dg~~~~~-----d~w~~~~ 45 (73)
T PF02820_consen 2 KLEAVDPRNP--SLICVATVVKVCGGRLLVRYDGWDDDY-----DFWCHID 45 (73)
T ss_dssp EEEEEETTEC--CEEEEEEEEEEETTEEEEEETTSTGGG-----EEEEETT
T ss_pred eEEEECCCCC--CeEEEEEEEEEeCCEEEEEEcCCCCCc-----cEEEECC
Confidence 6788866543 357799999999998779999875543 7888864
No 185
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=40.73 E-value=29 Score=32.95 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=31.1
Q ss_pred hhcCceEEeecCCCC----CcceeeeCCCCcccchHHHHHHHH
Q 000791 555 SAIGWVFKYKIGPNA----KRNLYHFSPGGKSYFSLRSACRAC 593 (1282)
Q Consensus 555 ~~~GW~~~~~~~~~~----~~~~~y~sP~g~~y~sl~~ac~~~ 593 (1282)
+-.||.-+..+++.+ +.+..|+||.|+.+-|....=+-+
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL 50 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYL 50 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHH
Confidence 346999998888875 679999999999888887665444
No 186
>PTZ00064 histone acetyltransferase; Provisional
Probab=40.68 E-value=42 Score=41.83 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=37.8
Q ss_pred CcCccEEEEEEeC----CEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcC
Q 000791 1021 NFQGFYTVLLERN----EELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG 1082 (1282)
Q Consensus 1021 ~f~Gfy~~VL~~~----~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg 1082 (1282)
|...|..+||..- -.+||-=+=--...+---+--|-|.|.||++|||+.|++.==.+.+.-|
T Consensus 352 DVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 352 DVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 4455666666532 2565532211111122246678899999999999999987666655544
No 187
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=39.46 E-value=44 Score=33.29 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCCCCCCEEEeecCCCEE-----------EEEEEEEeCCCceEEEEeCCCCCeEEEccCCCcccc
Q 000791 108 KCSLPFGLCVDVYYNEAWW-----------EGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1282)
Q Consensus 108 ~~~~~vGD~VDa~~~dgWW-----------eGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp~~ 162 (1282)
...|++||.|+.-.|.+-- +|+|+.+-...=.+.|+.-+-...+.+.+..|||..
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k~K~liv~peHLk~~~ 95 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNKEKTLIVRPEHLKPQK 95 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCceEEEEeCHHHccccc
Confidence 3589999999998877653 899999864432345554444455667888998864
No 188
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=39.40 E-value=32 Score=42.44 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=37.1
Q ss_pred CcCccEEEEEEe----CCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcC
Q 000791 1021 NFQGFYTVLLER----NEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG 1082 (1282)
Q Consensus 1021 ~f~Gfy~~VL~~----~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg 1082 (1282)
|...|..+||.. +-.+||-=+==-...+---+--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 274 dV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 274 DVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 445556666653 23666643311111122246778899999999999999976555544433
No 189
>PRK14852 hypothetical protein; Provisional
Probab=38.71 E-value=74 Score=42.98 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=67.0
Q ss_pred EEEEeCCEEEEEEEEEEe----------------------cCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccE
Q 000791 1028 VLLERNEELVTVATVRIF----------------------GEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEK 1085 (1282)
Q Consensus 1028 ~VL~~~~e~VsaA~lri~----------------------g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~ 1085 (1282)
++.-..+++|++.++.+- |..++|+-++|+++..|.+-+--.|++.+-.++...++..
T Consensus 78 ~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd 157 (989)
T PRK14852 78 FIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDD 157 (989)
T ss_pred EEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCe
Confidence 444344777777776443 4579999999998888877666678888877778889999
Q ss_pred EEecCccchhHhhhcccCeEEcCHH
Q 000791 1086 LILPAIPTVLKTWTTSFGFKRMTAS 1110 (1282)
Q Consensus 1086 LvLpA~~~a~~fwt~kfGF~~v~~~ 1110 (1282)
+++-.-+.=..||+.-|||+.+++.
T Consensus 158 ~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 158 ILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred EEEEECcchHHHHHHHhCCcccccc
Confidence 9999999999999999999999864
No 190
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=38.65 E-value=43 Score=30.28 Aligned_cols=41 Identities=32% Similarity=0.346 Sum_probs=32.4
Q ss_pred hcccEEEEeeCCCC---cceeeeeCCCCceeehHHHHHHhhccc
Q 000791 435 HQNWKLECTRDEKG---TLRQRYISPDGKCYHSLRQVCLDLTET 475 (1282)
Q Consensus 435 ~~gw~i~~~~~~~~---~~r~ry~sp~gk~y~sl~~~~~~~~~~ 475 (1282)
-.||+=+...-..| ..---|.||.||...|..||..-|...
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhC
Confidence 46998887765553 344459999999999999999988874
No 191
>PLN03239 histone acetyltransferase; Provisional
Probab=38.58 E-value=59 Score=39.02 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=37.5
Q ss_pred CcCccEEEEEEeC----CEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcC
Q 000791 1021 NFQGFYTVLLERN----EELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELG 1082 (1282)
Q Consensus 1021 ~f~Gfy~~VL~~~----~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lg 1082 (1282)
|...|..+||..- -.+||-=+==-...+---+--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 181 DV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 181 DVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred cccceEEEEEEEecCCceEEEEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 4455666666532 2455532211111111246678899999999999999987666665544
No 192
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=38.53 E-value=23 Score=39.18 Aligned_cols=29 Identities=28% Similarity=0.907 Sum_probs=23.8
Q ss_pred cccccccCCCC--------ceeecCCCCCccccCCCC
Q 000791 833 DYKCSVCHFGG--------ELLLCDRCPSSFHRNCVG 861 (1282)
Q Consensus 833 dd~C~vC~dgG--------eLL~CD~Cp~afH~~CL~ 861 (1282)
...|.+|.+.+ ....|..|...||..|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 35699998653 368899999999999995
No 193
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=36.49 E-value=60 Score=32.51 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=40.3
Q ss_pred CCCCCCCEEEeecCCCEE-----------EEEEEEEeCCCceEEEEeCCCCCeEEEccCCCcccc
Q 000791 109 CSLPFGLCVDVYYNEAWW-----------EGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQ 162 (1282)
Q Consensus 109 ~~~~vGD~VDa~~~dgWW-----------eGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp~~ 162 (1282)
..|++||.||.--|.++. +|+|..+....-.+.|..-+-...+.+.++.||++.
T Consensus 33 ~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v~vg~k~Kri~vr~eHlk~~~ 97 (98)
T PRK04306 33 QEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRAYIVEVKDGGKEKTLIVRPEHLRPQK 97 (98)
T ss_pred HhccCCCEEEEEecCceecCCccccccCCCEEEEeecCeEEEEEEEECCceeEEEcCHHHcCccC
Confidence 579999999999999997 789998854322345555565566777788888764
No 194
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=36.14 E-value=1.8e+02 Score=33.45 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=49.6
Q ss_pred EEEEEeCCEEEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccEEEe
Q 000791 1027 TVLLERNEELVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEKLIL 1088 (1282)
Q Consensus 1027 ~~VL~~~~e~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvL 1088 (1282)
++-.+.+|++||+|.+-+..+.+.-|-.+ =+|+|-..++|...+-.-.+.++++|.+.+-|
T Consensus 146 ~~ey~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 146 FIEFRGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred EEEEEeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 44445789999999999988888666544 57888788888888877778899999999988
No 195
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=36.10 E-value=25 Score=41.28 Aligned_cols=24 Identities=33% Similarity=0.738 Sum_probs=20.4
Q ss_pred cCCceeecCccccccc-cccccCCC
Q 000791 893 VDGSVLICHQCELKYH-RKCLQNGA 916 (1282)
Q Consensus 893 ~~g~Ll~CdqCer~YH-~~CL~~~~ 916 (1282)
.++.+++|-.|+.||| .+|++...
T Consensus 144 ~e~~m~QC~iCEDWFHce~c~~~~~ 168 (345)
T KOG2752|consen 144 EEGEMLQCVICEDWFHCEGCMQAKT 168 (345)
T ss_pred ccceeeeEEeccchhcccccCcccc
Confidence 3588999999999999 88987653
No 196
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=35.73 E-value=1.2e+02 Score=36.64 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=65.8
Q ss_pred CcCcCccEEEEEEeCC--EEEE-----EEEEEEecC--ceEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCcc-----
Q 000791 1019 RLNFQGFYTVLLERNE--ELVT-----VATVRIFGE--KAAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVE----- 1084 (1282)
Q Consensus 1019 Rl~f~Gfy~~VL~~~~--e~Vs-----aA~lri~g~--~~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~----- 1084 (1282)
...+.-=||+.+...+ ++|| -++|||.+. ..+||-++++++..|++++.=.|+.+|-+-..-.|+=
T Consensus 128 ~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yT 207 (421)
T KOG2779|consen 128 PPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYT 207 (421)
T ss_pred CCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhh
Confidence 3445556898887665 7877 478999986 6799999999999999999999999988766555543
Q ss_pred -EEEecCccchhHhhhcc
Q 000791 1085 -KLILPAIPTVLKTWTTS 1101 (1282)
Q Consensus 1085 -~LvLpA~~~a~~fwt~k 1101 (1282)
-++||+-...-..|-+.
T Consensus 208 aGvvLp~PVstcRY~HRs 225 (421)
T KOG2779|consen 208 AGVVLPKPVSTCRYWHRS 225 (421)
T ss_pred cceeeccccchhhhhhcc
Confidence 57888888888888853
No 197
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=35.39 E-value=17 Score=45.96 Aligned_cols=35 Identities=26% Similarity=0.629 Sum_probs=26.3
Q ss_pred CCceeecCccccccccccccCCCcchhccCCCCCcccCCcchhhHHh
Q 000791 894 DGSVLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFLG 940 (1282)
Q Consensus 894 ~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WfCs~~C~~I~~~ 940 (1282)
......|..|...||..|+..... . ||+ |..+..+
T Consensus 528 ~~~~~rC~~C~avfH~~C~~r~s~-------~----CPr-C~R~q~r 562 (580)
T KOG1829|consen 528 TRNTRRCSTCLAVFHKKCLRRKSP-------C----CPR-CERRQKR 562 (580)
T ss_pred cccceeHHHHHHHHHHHHHhccCC-------C----CCc-hHHHHHH
Confidence 455789999999999999886421 1 775 8877654
No 198
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=35.27 E-value=4.9 Score=48.51 Aligned_cols=70 Identities=29% Similarity=0.624 Sum_probs=48.2
Q ss_pred ccccccCCC--CceeecCCCCCccccCCCC-------CC----CCCCCCCccCCCC------cccCCCCCCCCccccccC
Q 000791 834 YKCSVCHFG--GELLLCDRCPSSFHRNCVG-------LE----DVPDGDWFCPSCC------CSICGNSNSREEVEDVVD 894 (1282)
Q Consensus 834 d~C~vC~dg--GeLL~CD~Cp~afH~~CL~-------L~----~vP~g~W~C~~C~------C~iCgk~~~~~~~~~~~~ 894 (1282)
.+|..|+.+ |+..-|..=++.||..|.. |. ---++.-||..|- |..|++...
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~--------- 345 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIM--------- 345 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHH---------
Confidence 379999874 6777787778889999985 21 1123456888884 888887642
Q ss_pred CceeecCccccccccccccC
Q 000791 895 GSVLICHQCELKYHRKCLQN 914 (1282)
Q Consensus 895 g~Ll~CdqCer~YH~~CL~~ 914 (1282)
++|| ..|.++||..|..-
T Consensus 346 d~iL--rA~GkayHp~CF~C 363 (468)
T KOG1701|consen 346 DRIL--RALGKAYHPGCFTC 363 (468)
T ss_pred HHHH--HhcccccCCCceEE
Confidence 1222 45889999988653
No 199
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=35.19 E-value=14 Score=34.18 Aligned_cols=28 Identities=32% Similarity=0.841 Sum_probs=11.4
Q ss_pred ccccccCCC----Cc--eeecC--CCCCccccCCCC
Q 000791 834 YKCSVCHFG----GE--LLLCD--RCPSSFHRNCVG 861 (1282)
Q Consensus 834 d~C~vC~dg----Ge--LL~CD--~Cp~afH~~CL~ 861 (1282)
..|.||... ++ .+.|+ .|...||..||.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 358888742 33 58898 799999999996
No 200
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=35.18 E-value=18 Score=43.87 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=20.5
Q ss_pred CCCCCCCCEEEeec--CCCEEEEEEEE
Q 000791 108 KCSLPFGLCVDVYY--NEAWWEGVIFD 132 (1282)
Q Consensus 108 ~~~~~vGD~VDa~~--~dgWWeGvV~~ 132 (1282)
.-.|+|||.+|+-- ++|||+|+.-.
T Consensus 116 ELelkVGDiIeli~eVEeGWw~G~Lng 142 (627)
T KOG4348|consen 116 ELELKVGDIIELISEVEEGWWKGKLNG 142 (627)
T ss_pred eeeeeeccHHHhhhHhhhhhhhceecC
Confidence 35799999999875 68999998764
No 201
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=35.07 E-value=59 Score=33.43 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCCCCCCEEEEEeCCCCccceEEEEEEEE-----ecCCCce-EEeCCc
Q 000791 19 QRKLPVGERVEVRSDEDGFLGSWHAGTVIA-----SSSDCRT-VKYDHL 61 (1282)
Q Consensus 19 ~~~FkvGd~VEV~S~eeG~rGsWF~AtVI~-----~~~~~~y-VeY~dL 61 (1282)
...+++||.|=+.-...+.+ |.||+|+. ......| |+|-|-
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~--Y~Pg~V~~~~~~~~~~~~~~~V~f~ng 99 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCR--YGPGTVIAGPERRASEDKEYTVRFYNG 99 (124)
T ss_pred cCcCCCCCEEEEecCcCCCE--EeCEEEEECccccccCCceEEEEEECC
Confidence 67899999999995555555 99999996 3444444 776543
No 202
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=34.81 E-value=54 Score=33.01 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=33.9
Q ss_pred CCCCCCEEEeecCC-CEEEEEEEEEe------------CCCceEEEEeCCCC-CeEEEccCCCccc
Q 000791 110 SLPFGLCVDVYYNE-AWWEGVIFDLE------------DGSAERRIFFPDLG-DEMTVGIDSLRIT 161 (1282)
Q Consensus 110 ~~~vGD~VDa~~~d-gWWeGvV~~v~------------~g~~~y~V~Fpgeg-del~f~~~dLRp~ 161 (1282)
.|.+||.|=|=..+ -||.|.|+..- .....|.|.|-|.. +.--+..++|.|-
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf 67 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPF 67 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHcccc
Confidence 58899999887777 99999999521 11235888777753 4433444444443
No 203
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=34.45 E-value=1.2e+02 Score=29.92 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCCCCCCEEEeecCC---CEEEEEEEEEeCCCceEEEEeCCCCCe
Q 000791 109 CSLPFGLCVDVYYNE---AWWEGVIFDLEDGSAERRIFFPDLGDE 150 (1282)
Q Consensus 109 ~~~~vGD~VDa~~~d---gWWeGvV~~v~~g~~~y~V~Fpgegde 150 (1282)
..|++|..+||-... -+|...|.++.++ ++.|.|.|-.+.
T Consensus 26 ~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~--~l~v~~dg~~~~ 68 (96)
T smart00561 26 NGFKVGMKLEAVDPRNPSLICVATVVEVKGY--RLLLHFDGWDDK 68 (96)
T ss_pred CcccCCCEEEEECCCCCceEEEEEEEEEECC--EEEEEEccCCCc
Confidence 579999999988776 6899999999743 799999985543
No 204
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=32.97 E-value=37 Score=29.41 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=17.9
Q ss_pred CCCCCCCEEEee---cCCCEEEEEE
Q 000791 109 CSLPFGLCVDVY---YNEAWWEGVI 130 (1282)
Q Consensus 109 ~~~~vGD~VDa~---~~dgWWeGvV 130 (1282)
-.|+.||.|.+. .+++||.|..
T Consensus 16 Ls~~~Gd~i~v~~~~~~~~ww~~~~ 40 (55)
T PF07653_consen 16 LSFKKGDVIEVLGEKDDDGWWLGEN 40 (55)
T ss_dssp -EB-TTEEEEEEEEECSTSEEEEEE
T ss_pred eEEecCCEEEEEEeecCCCEEEEEE
Confidence 368899999998 6789999987
No 205
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.83 E-value=23 Score=44.93 Aligned_cols=37 Identities=30% Similarity=0.692 Sum_probs=26.1
Q ss_pred CCccCCCC-----------cccCCCCCCCCccccccCCceeecCccccccccccccCC
Q 000791 869 DWFCPSCC-----------CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNG 915 (1282)
Q Consensus 869 ~W~C~~C~-----------C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~ 915 (1282)
.|||+.|. |..||...... -.|+.|++.|+..++..+
T Consensus 126 ~~Yc~~~e~fl~dr~v~g~cp~cg~~~arG----------D~Ce~Cg~~~~P~~l~~p 173 (558)
T COG0143 126 GLYCVSCERFLPDRYVEGTCPKCGGEDARG----------DQCENCGRTLDPTELINP 173 (558)
T ss_pred eeEcccccccccchheeccCCCcCccccCc----------chhhhccCcCCchhcCCC
Confidence 37888775 77777544322 379999999998886544
No 206
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=32.50 E-value=34 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=19.6
Q ss_pred CCCCCCCEEEeecCC--CEEEEEE
Q 000791 109 CSLPFGLCVDVYYNE--AWWEGVI 130 (1282)
Q Consensus 109 ~~~~vGD~VDa~~~d--gWWeGvV 130 (1282)
-.|+.||.+|...+| |||.|.+
T Consensus 1068 ls~~~~diIei~~edpSGWw~gk~ 1091 (1106)
T KOG0162|consen 1068 LSFKKGDIIEIMREDPSGWWLGKL 1091 (1106)
T ss_pred ccccCCCEEEEeccCCCcchhhcc
Confidence 478899999999998 9999983
No 207
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=32.40 E-value=17 Score=35.45 Aligned_cols=28 Identities=29% Similarity=0.749 Sum_probs=18.1
Q ss_pred cCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 000791 848 CDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 848 CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~ 876 (1282)
-..|...||..|+. +.. ....=.||-|+
T Consensus 49 ~g~C~H~FH~hCI~kWl~~-~~~~~~CPmCR 78 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLST-QSSKGQCPMCR 78 (85)
T ss_pred eccCccHHHHHHHHHHHcc-ccCCCCCCCcC
Confidence 34599999999986 332 12233677765
No 208
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=31.88 E-value=22 Score=35.06 Aligned_cols=29 Identities=38% Similarity=1.033 Sum_probs=24.8
Q ss_pred cccccccCC-CCceeecCC--CCCccccCCCC
Q 000791 833 DYKCSVCHF-GGELLLCDR--CPSSFHRNCVG 861 (1282)
Q Consensus 833 dd~C~vC~d-gGeLL~CD~--Cp~afH~~CL~ 861 (1282)
...|.+|+. +|-.+-|.. |...||+.|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 456999998 577999987 99999999974
No 209
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=31.62 E-value=43 Score=40.70 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=34.0
Q ss_pred cCcCccEEEEEEeCCEEEEEEEEEEecC--ceEE---EeeeeeecCcccCChhHHHHHHH
Q 000791 1020 LNFQGFYTVLLERNEELVTVATVRIFGE--KAAE---IPLVGTRFQYRRLGMCRILMNEL 1074 (1282)
Q Consensus 1020 l~f~Gfy~~VL~~~~e~VsaA~lri~g~--~~AE---Ip~VAT~~~yRgqGmgr~Lm~aI 1074 (1282)
+|-..|..+||...|.-=.|+ .|.. .-++ +--|=|.|.||++|||+.|++.=
T Consensus 229 yDvdpFlFYVlte~d~~G~VG---YFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFS 285 (396)
T KOG2747|consen 229 YDVDPFLFYVLTECDSYGCVG---YFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFS 285 (396)
T ss_pred EeccceEEEEEEecCCcceee---eeccccccccccceeeeeecChhhhcccchhhhhhh
Confidence 345667777777665332222 3322 2223 66788999999999999999753
No 210
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=31.57 E-value=42 Score=34.64 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=35.7
Q ss_pred eecCcccCChhHHHHHHHHHHHHHcCccEEEe--cCc-cchhHhhhcccCeEEcCHHHHHhhcccceeeeCC
Q 000791 1057 TRFQYRRLGMCRILMNELEKRLMELGVEKLIL--PAI-PTVLKTWTTSFGFKRMTASERVQLVDYTFLNFPD 1125 (1282)
Q Consensus 1057 T~~~yRgqGmgr~Lm~aIE~~l~~lgV~~LvL--pA~-~~a~~fwt~kfGF~~v~~~~l~~~~~h~~m~F~g 1125 (1282)
|.++.||+|+|++|++++.+ ..+++.-.+ .-- +-.+.|....+|-+..-+. ..++++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~---~e~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ipQ------~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQ---EENVSPHQLAIDRPSPKLLSFLKKHYGLQRYIPQ------SNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHH---HcCCCcccceecCCcHHHHHHHHHhcCCCcCCCC------CccEEEehH
Confidence 78899999999999987654 444443222 111 1256666655554433222 356777765
No 211
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=31.33 E-value=61 Score=31.82 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCCCEEEeecCC-CEEEEEEEEEeC----------CCceEEEEeCCCCCeEEEccCCCccccccc
Q 000791 112 PFGLCVDVYYNE-AWWEGVIFDLED----------GSAERRIFFPDLGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 112 ~vGD~VDa~~~d-gWWeGvV~~v~~----------g~~~y~V~Fpgegdel~f~~~dLRp~~dW~ 165 (1282)
.+||.|=|=..+ -||.|.|++... ..+.+-|+|-|+.+..-+..++|-|-.+..
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf~e~~ 66 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQEGD 66 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCEEEeccccccchhhhh
Confidence 479999888776 999999987311 113699999999998888888888877775
No 212
>PRK00756 acyltransferase NodA; Provisional
Probab=31.23 E-value=54 Score=35.74 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=32.4
Q ss_pred eEEEeeeeeecCcccCChhHHHHHHHHHHHHHcCccE
Q 000791 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLMELGVEK 1085 (1282)
Q Consensus 1049 ~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~~lgV~~ 1085 (1282)
+||+.+.|++++..|.|++..+ .++--.|++|||.-
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF 120 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPF 120 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCe
Confidence 6999999999999999999866 78889999999863
No 213
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=32 Score=41.22 Aligned_cols=44 Identities=30% Similarity=0.611 Sum_probs=27.1
Q ss_pred ccccccCCC---CceeecCCCCCccccCCCCCCCCCCCCCccCCCCcc
Q 000791 834 YKCSVCHFG---GELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCCCS 878 (1282)
Q Consensus 834 d~C~vC~dg---GeLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~C~ 878 (1282)
+.|.+|.+. |+.+-==-|.-.||..|++..-... .=+||-|+|.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 689999873 5533224467799999998221111 1257777653
No 214
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=30.74 E-value=17 Score=42.32 Aligned_cols=30 Identities=40% Similarity=0.767 Sum_probs=26.3
Q ss_pred eEeCCCCCeeeccceeeccCC-CccCCCceE
Q 000791 762 IKCKCCGKVYTLSGFEDHAGS-TYCNPASHI 791 (1282)
Q Consensus 762 I~C~CC~k~fS~S~FE~HAG~-~~~~P~~nI 791 (1282)
|+|.|=+.-|||.+|-.|||+ ....|-++|
T Consensus 253 i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 253 IVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 899999999999999999998 456777666
No 215
>PLN02400 cellulose synthase
Probab=29.76 E-value=50 Score=44.70 Aligned_cols=46 Identities=28% Similarity=0.737 Sum_probs=36.1
Q ss_pred CCCcccccccCCC------Cc-eeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 000791 830 GENDYKCSVCHFG------GE-LLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1282)
Q Consensus 830 ~~ndd~C~vC~dg------Ge-LL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~ 876 (1282)
..+...|.+|++. |+ .+-|..|.-..-..|+.. +..+|.=.||.|+
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCk 85 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCK 85 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccC
Confidence 3466789999973 44 799999988777888843 4778888999997
No 216
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=29.70 E-value=50 Score=36.29 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHhhhc---ccE-EEEeeCCCCcceeeeeCCCCceeehHHHHHH
Q 000791 426 ILSVKKHLKHQ---NWK-LECTRDEKGTLRQRYISPDGKCYHSLRQVCL 470 (1282)
Q Consensus 426 ~~~~~khl~~~---gw~-i~~~~~~~~~~r~ry~sp~gk~y~sl~~~~~ 470 (1282)
..+||+|+.+| |-. -+-+....|++||||+=-. ..|.+|.|-|+
T Consensus 192 ~~Tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 239 (239)
T PRK10430 192 RVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRLQA-EHYSLLKQYCQ 239 (239)
T ss_pred HHHHHHHHHHHHhCCEEEEEeeccCCCCCCeeeeccc-ccchhhhhccC
Confidence 35789999988 543 2344455689999998654 45777877764
No 217
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=29.58 E-value=29 Score=38.36 Aligned_cols=21 Identities=19% Similarity=0.757 Sum_probs=17.8
Q ss_pred CCceeecCccccccccccccC
Q 000791 894 DGSVLICHQCELKYHRKCLQN 914 (1282)
Q Consensus 894 ~g~Ll~CdqCer~YH~~CL~~ 914 (1282)
......|..|...||..|...
T Consensus 169 ~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 169 IDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCeeeCCcCccccchhhcCC
Confidence 345789999999999999873
No 218
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=28.55 E-value=46 Score=43.03 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=26.8
Q ss_pred eEEEeeeeeecCcccCChhHHHHHHHHHHHH
Q 000791 1049 AAEIPLVGTRFQYRRLGMCRILMNELEKRLM 1079 (1282)
Q Consensus 1049 ~AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l~ 1079 (1282)
-|.|-||||+|+|++-|||.+-++-+.++..
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 3678899999999999999999988877653
No 219
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=28.22 E-value=7.6 Score=32.20 Aligned_cols=38 Identities=32% Similarity=0.788 Sum_probs=23.4
Q ss_pred ccccccCCC---C-ceeecCCCCCccccCCCC--CCCCCCCCCccCCCC
Q 000791 834 YKCSVCHFG---G-ELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCC 876 (1282)
Q Consensus 834 d~C~vC~dg---G-eLL~CD~Cp~afH~~CL~--L~~vP~g~W~C~~C~ 876 (1282)
|.|.+|.+. + ..+... |.-.||..|+. +..- -.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888763 3 344444 89999999986 3221 2677763
No 220
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=26.63 E-value=27 Score=27.07 Aligned_cols=10 Identities=70% Similarity=1.903 Sum_probs=8.5
Q ss_pred CCCCccCCCC
Q 000791 867 DGDWFCPSCC 876 (1282)
Q Consensus 867 ~g~W~C~~C~ 876 (1282)
+|+|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 6899999986
No 221
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=26.56 E-value=42 Score=24.98 Aligned_cols=9 Identities=67% Similarity=1.951 Sum_probs=7.3
Q ss_pred CCCccCCCC
Q 000791 868 GDWFCPSCC 876 (1282)
Q Consensus 868 g~W~C~~C~ 876 (1282)
|+|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 689999874
No 222
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.42 E-value=27 Score=45.17 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=31.2
Q ss_pred CCCccCCCC------cccCCCCCCCCccccccCCceeecCccccccccccccCC
Q 000791 868 GDWFCPSCC------CSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNG 915 (1282)
Q Consensus 868 g~W~C~~C~------C~iCgk~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~ 915 (1282)
+.|+|..|. |.+|+-.. -|....|.+|++.-|..|+..-
T Consensus 767 ~~~~c~rc~s~a~~~CtVC~~vi---------~G~~~~c~~C~H~gH~sh~~sw 811 (839)
T KOG0269|consen 767 KLWQCDRCESRASAKCTVCDLVI---------RGVDVWCQVCGHGGHDSHLKSW 811 (839)
T ss_pred cceeechHHHHhhcCceeeccee---------eeeEeecccccccccHHHHHHH
Confidence 348888885 88887653 3678999999999999998764
No 223
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.47 E-value=95 Score=36.84 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=16.8
Q ss_pred CCcccccccCCC-------------CceeecCCCCCccc
Q 000791 831 ENDYKCSVCHFG-------------GELLLCDRCPSSFH 856 (1282)
Q Consensus 831 ~ndd~C~vC~dg-------------GeLL~CD~Cp~afH 856 (1282)
++...|.+||.. ...+.|..|..-+|
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH 223 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc
Confidence 356789999852 13667777765554
No 224
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=23.86 E-value=42 Score=31.18 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=12.9
Q ss_pred cccCCCCCCCCccccccCCceeecC--ccccccccccccCC
Q 000791 877 CSICGNSNSREEVEDVVDGSVLICH--QCELKYHRKCLQNG 915 (1282)
Q Consensus 877 C~iCgk~~~~~~~~~~~~g~Ll~Cd--qCer~YH~~CL~~~ 915 (1282)
|.+|.....+.+ ....+.|+ +|.+.||..||...
T Consensus 5 C~IC~~~~~~~~-----~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 5 CGICYSYRLDDG-----EIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp -SSS--SS-TT----------B--S-TT----B-SGGGHHH
T ss_pred CCcCCcEecCCC-----CcCceEcCCcccCCHHHHHHHHHH
Confidence 777765433111 12358898 89999999999764
No 225
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=23.75 E-value=2e+02 Score=26.42 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCCEEEeecCCCEEEEEEEEEeCCCceEEEEe
Q 000791 111 LPFGLCVDVYYNEAWWEGVIFDLEDGSAERRIFF 144 (1282)
Q Consensus 111 ~~vGD~VDa~~~dgWWeGvV~~v~~g~~~y~V~F 144 (1282)
-++||.++ | .+| ++|+|.++.+++ +.|-+
T Consensus 4 a~vGdiIe-f-k~g-~~G~V~kv~eNS--VIVdI 32 (57)
T PF09953_consen 4 AKVGDIIE-F-KDG-FTGIVEKVYENS--VIVDI 32 (57)
T ss_pred cccCcEEE-E-cCC-cEEEEEEEecCc--EEEEE
Confidence 46899999 5 456 799999998877 55544
No 226
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.60 E-value=1.4e+02 Score=34.16 Aligned_cols=93 Identities=23% Similarity=0.198 Sum_probs=60.4
Q ss_pred chhhhhhhhhhhHHHhhhccc--ccccCCCchhhHHHHHhhccCCCCCcCcCccEEEEEEeC--CEEEEEEEEEEecCce
Q 000791 974 TDIQTLSKLNIAHRVMHECFE--PVHEPYSSGDLAEDVLFSRWSMLNRLNFQGFYTVLLERN--EELVTVATVRIFGEKA 1049 (1282)
Q Consensus 974 adie~lSkLa~AL~Vm~EcF~--Pi~D~rTg~DlI~~vvy~r~s~f~Rl~f~Gfy~~VL~~~--~e~VsaA~lri~g~~~ 1049 (1282)
+|.+-+..+=.-+.+-.++|+ .-.+|..--..+..++|+|+|++|.|.- =..+-..++ ...++...++ | -.
T Consensus 91 sD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwn--tlvVgGv~~~g~~~lg~V~~~--G-~~ 165 (256)
T KOG0185|consen 91 SDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWN--TLVVGGVDNTGEPFLGYVDLL--G-VA 165 (256)
T ss_pred HHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhh--heeEeeecCCCCeeEEEEeec--c-cc
Confidence 455544333334445577777 6666766668899999999999999863 112222233 3667776654 3 34
Q ss_pred EEEeeeeeecCcccCChhHHHHHHHHHHH
Q 000791 1050 AEIPLVGTRFQYRRLGMCRILMNELEKRL 1078 (1282)
Q Consensus 1050 AEIp~VAT~~~yRgqGmgr~Lm~aIE~~l 1078 (1282)
.|-|.||| |+|.-|..-+.+..
T Consensus 166 Y~~~~vAT-------Gfg~hLa~P~lR~~ 187 (256)
T KOG0185|consen 166 YESPVVAT-------GFGAHLALPLLRDE 187 (256)
T ss_pred ccCchhhh-------hhHHHhhhHHHHHh
Confidence 68899998 78888876665543
No 227
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=23.46 E-value=44 Score=39.92 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=34.6
Q ss_pred cCcCccEEEEEEeCCE----EEEEEEEEEecCceEEEeeeeeecCcccCChhHHHHHH
Q 000791 1020 LNFQGFYTVLLERNEE----LVTVATVRIFGEKAAEIPLVGTRFQYRRLGMCRILMNE 1073 (1282)
Q Consensus 1020 l~f~Gfy~~VL~~~~e----~VsaA~lri~g~~~AEIp~VAT~~~yRgqGmgr~Lm~a 1073 (1282)
+|..+|-.+||...|. +||-=+=--...+-.-+--|-|.|.||++|||..|++.
T Consensus 229 yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 229 YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEEecChhHhcccceEeeee
Confidence 4567777777776653 44432211112222446678899999999999998853
No 228
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.30 E-value=42 Score=31.74 Aligned_cols=29 Identities=38% Similarity=0.906 Sum_probs=24.8
Q ss_pred cccccccCCC-CceeecCC--CCCccccCCCC
Q 000791 833 DYKCSVCHFG-GELLLCDR--CPSSFHRNCVG 861 (1282)
Q Consensus 833 dd~C~vC~dg-GeLL~CD~--Cp~afH~~CL~ 861 (1282)
...|.+|+.. |-.+-|.. |...||..|.-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 3469999998 88888865 99999999984
No 229
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=22.95 E-value=1.5e+02 Score=29.20 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=34.2
Q ss_pred EEEeec--CCCEEEEEEEEEeCC------CceEEEEeCC--CCCeEEEccCCCccc----ccccc
Q 000791 116 CVDVYY--NEAWWEGVIFDLEDG------SAERRIFFPD--LGDEMTVGIDSLRIT----QDWDE 166 (1282)
Q Consensus 116 ~VDa~~--~dgWWeGvV~~v~~g------~~~y~V~Fpg--egdel~f~~~dLRp~----~dW~d 166 (1282)
.|||-. .|+|-|+.|+.+... .--|.|.|.+ +....++..+++||+ +.|.+
T Consensus 1 ~vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~gvv~~~~~~iRpRARt~l~w~~ 65 (85)
T PF12148_consen 1 LVDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPENGVVEMRSKDIRPRARTILKWDE 65 (85)
T ss_dssp EEEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG-EEEEEGGGEEE---SBE-GGG
T ss_pred CcccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCcCceecccccccceeeEeccHHh
Confidence 378874 458999999997432 2248999985 555678889999996 56664
No 230
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=22.47 E-value=1e+02 Score=29.35 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=32.1
Q ss_pred hcccEEEEeeCCCC-c--ceeeeeCCCCceeehHHHHHHhhcccc
Q 000791 435 HQNWKLECTRDEKG-T--LRQRYISPDGKCYHSLRQVCLDLTETT 476 (1282)
Q Consensus 435 ~~gw~i~~~~~~~~-~--~r~ry~sp~gk~y~sl~~~~~~~~~~~ 476 (1282)
-.||+=|-.-...| . .-.-|.||-||.-.|..+|..-|..+.
T Consensus 7 ~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~~~ 51 (73)
T cd01397 7 ELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSKNG 51 (73)
T ss_pred CCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHhCC
Confidence 47999887655544 1 123499999999999999999998744
No 231
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.19 E-value=67 Score=40.39 Aligned_cols=46 Identities=30% Similarity=0.467 Sum_probs=36.3
Q ss_pred CCcccccccCCCCceeecCCCCCccccCCCCC-CCCCC--CCCccCCCC
Q 000791 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVGL-EDVPD--GDWFCPSCC 876 (1282)
Q Consensus 831 ~ndd~C~vC~dgGeLL~CD~Cp~afH~~CL~L-~~vP~--g~W~C~~C~ 876 (1282)
..+-+|+-|+-.|..+.|+.|-+.||..|+.. .+.+. -.|.|+.|.
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 34568999999999999999999999999972 23333 358888764
No 232
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=21.40 E-value=30 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.698 Sum_probs=17.5
Q ss_pred ceEeCCCCCeeeccceeecc
Q 000791 761 GIKCKCCGKVYTLSGFEDHA 780 (1282)
Q Consensus 761 GI~C~CC~k~fS~S~FE~HA 780 (1282)
.+.|+.|++.|.+..++.|.
T Consensus 2 l~~C~~CgR~F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCEECHHHHHHHH
Confidence 35799999999999999885
No 233
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.92 E-value=4.1e+02 Score=36.10 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCCCCCEEEEEeCCCCccceEEEEEEEEecCCCceEEeC--CccCCCCCCCceEEEEccccccCCccccccccCCCCc
Q 000791 19 QRKLPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYD--HLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGH 96 (1282)
Q Consensus 19 ~~~FkvGd~VEV~S~eeG~rGsWF~AtVI~~~~~~~yVeY~--dL~deDgs~~L~E~V~~s~~~~g~~~~~~~r~~~r~~ 96 (1282)
...|.+||.|||.--| +.| +.++|.++.+....+.=. +| .++|. |+.+ .
T Consensus 405 ~~~F~~GD~VeV~~Ge--l~g--lkG~ve~vdg~~vti~~~~e~l-----~~pl~--~~~~------------------e 455 (1024)
T KOG1999|consen 405 KHLFSPGDAVEVIVGE--LKG--LKGKVESVDGTIVTIMSKHEDL-----KGPLE--VPAS------------------E 455 (1024)
T ss_pred ccccCCCCeEEEeeee--ecc--ceeEEEeccCceEEEeeccccC-----CCccc--cchH------------------h
Confidence 4459999999999533 344 778888888776664322 11 11111 2111 1
Q ss_pred ccCCCCCCCCCCCCCCCCCEEEee---cCCCEEEEEEEEEeCCCceEEEEeCCCCCeEEEccCCCccccc
Q 000791 97 IRPLPPPVKFGKCSLPFGLCVDVY---YNEAWWEGVIFDLEDGSAERRIFFPDLGDEMTVGIDSLRITQD 163 (1282)
Q Consensus 97 IRP~PP~~~~~~~~~~vGD~VDa~---~~dgWWeGvV~~v~~g~~~y~V~Fpgegdel~f~~~dLRp~~d 163 (1282)
+ ..-|++||+|=|- |.|. +|.|++|..+ .+.|+=..+.+++.+-+.+|-..-+
T Consensus 456 L----------rKyF~~GDhVKVi~G~~eG~--tGlVvrVe~~--~vi~~Sd~t~eel~Vf~~dlq~c~e 511 (1024)
T KOG1999|consen 456 L----------RKYFEPGDHVKVIAGRYEGD--TGLVVRVEQG--DVILLSDLTMEELKVFARDLQLCSE 511 (1024)
T ss_pred h----------hhhccCCCeEEEEeccccCC--cceEEEEeCC--eEEEEecCccceeeEEehhcccchh
Confidence 1 2458899988775 3333 7899999765 3666666688888888888864433
No 234
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.67 E-value=77 Score=42.63 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=24.4
Q ss_pred CCcccccccCCCCceeecCCCCCccccCCCCCCCCCCCCCccCCCC
Q 000791 831 ENDYKCSVCHFGGELLLCDRCPSSFHRNCVGLEDVPDGDWFCPSCC 876 (1282)
Q Consensus 831 ~ndd~C~vC~dgGeLL~CD~Cp~afH~~CL~L~~vP~g~W~C~~C~ 876 (1282)
.....|..|+...-...|..|+.. ....|+|+.|.
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~-----------Te~i~fCP~CG 658 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTH-----------TEPVYRCPRCG 658 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCC-----------CCcceeCcccc
Confidence 345679999887777778777653 34457888874
No 235
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=39 Score=39.08 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=21.4
Q ss_pred cCCCcccccccCCCC------c----eeecCCCCCccccCCCC
Q 000791 829 QGENDYKCSVCHFGG------E----LLLCDRCPSSFHRNCVG 861 (1282)
Q Consensus 829 ~~~ndd~C~vC~dgG------e----LL~CD~Cp~afH~~CL~ 861 (1282)
.+-++..|.+|++.= + -+.==.|+.+||.+|..
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIr 262 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIR 262 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhh
Confidence 345677899998631 1 11112488899999985
Done!