Query 000791
Match_columns 1282
No_of_seqs 445 out of 1962
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 15:51:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000791.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_563-566//hhsearch_pdb/000791hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 139.2 7.8 96 828-936 2-103 (111)
2 2kwj_A Zinc finger protein DPF 1.0 1 1 134.5 4.9 93 834-939 2-110 (114)
3 4gne_A Histone-lysine N-methyl 1.0 1 1 132.6 7.0 90 827-932 9-100 (107)
4 3v43_A Histone acetyltransfera 1.0 1 1 128.0 4.8 92 832-935 4-110 (112)
5 2lbm_A Transcriptional regulat 1.0 1 1 104.0 0.2 100 754-878 9-117 (142)
6 3ask_A E3 ubiquitin-protein li 1.0 1 1 103.9 7.8 113 783-935 110-223 (226)
7 3h8z_A FragIle X mental retard 1.0 1 1 103.5 13.4 111 22-165 2-121 (128)
8 3u5n_A E3 ubiquitin-protein li 1.0 1 1 100.9 4.6 49 829-877 3-53 (207)
9 3o36_A Transcription intermedi 1.0 1 1 99.9 4.8 48 830-877 1-50 (184)
10 2ro1_A Transcription intermedi 1.0 1 1 93.9 4.6 47 832-878 1-49 (189)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=139.17 Aligned_cols=96 Identities=31% Similarity=0.878 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCCCCCE---EECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 468775356533789914---41488999456688899--77899998547877-5347999998754344589423127
Q 000791 828 LQGENDYKCSVCHFGGEL---LLCDRCPSSFHRNCVGL--EDVPDGDWFCPSCC-CSICGNSNSREEVEDVVDGSVLICH 901 (1282)
Q Consensus 828 ~~~~ndd~C~VC~~gGeL---IlCD~Cp~afH~~CL~L--~~vP~G~W~Cp~C~-C~iCg~~~~~~~~~~~~~g~Ll~Cd 901 (1282)
+.+.|++.|.+|+++|++ |+|+.|+++||+.||++ ..++.+.|+|+.|. |.+|++... +..++.|+
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~--------~~~ll~Cd 73 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGE--------DSKMLVCD 73 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSC--------CTTEEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCEEECC
T ss_conf 8889979995789988875885999999773967708865544566865876782623476589--------87765899
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHH
Q ss_conf 64600211102689740010299997101774046
Q 000791 902 QCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEE 936 (1282)
Q Consensus 902 qCer~YH~~CL~~~~~~~L~e~p~~~WFCs~~C~~ 936 (1282)
+|+++||..|+.++ +..+|++.|||+. |..
T Consensus 74 ~C~~~yH~~Cl~pp----l~~~P~g~W~C~~-C~~ 103 (111)
T 2ysm_A 74 TCDKGYHTFCLQPV----MKSVPTNGWKCKN-CRI 103 (111)
T ss_dssp SSCCEEEGGGSSSC----CSSCCSSCCCCHH-HHC
T ss_pred CCCCHHHHHHCCCC----CCCCCCCCCCCCC-CCC
T ss_conf 99808869865876----5668898829928-827
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=134.51 Aligned_cols=93 Identities=32% Similarity=0.807 Sum_probs=78.3
Q ss_pred CCCCCCCCC----------CCEEECCCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 356533789----------914414889994566888997-----789999854787-7534799999875434458942
Q 000791 834 YKCSVCHFG----------GELLLCDRCPSSFHRNCVGLE-----DVPDGDWFCPSC-CCSICGNSNSREEVEDVVDGSV 897 (1282)
Q Consensus 834 d~C~VC~~g----------GeLIlCD~Cp~afH~~CL~L~-----~vP~G~W~Cp~C-~C~iCg~~~~~~~~~~~~~g~L 897 (1282)
++|.+|..+ ++||.|+.|+++||+.||++. .++.+.|+|+.| .|.+|+.... ++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~--------~~~l 73 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEN--------DDQL 73 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTT--------TTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------CCCE
T ss_conf 80865889753444679999986929899832321387846643116877517566273375634688--------8745
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 312764600211102689740010299997101774046687
Q 000791 898 LICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCEEIFL 939 (1282)
Q Consensus 898 l~CdqCer~YH~~CL~~~~~~~L~e~p~~~WFCs~~C~~I~~ 939 (1282)
+.|++|+++||..|+.++ +..+|++.|||+ .|...+.
T Consensus 74 l~Cd~C~~~yH~~Cl~pp----l~~~P~g~W~C~-~C~~~~~ 110 (114)
T 2kwj_A 74 LFCDDCDRGYHMYCLNPP----VAEPPEGSWSCH-LCWELLK 110 (114)
T ss_dssp EECSSSCCEEETTTSSSC----CSSCCSSCCCCH-HHHHHHH
T ss_pred EECCCCCCCCCCCCCCCC----CCCCCCCCEECC-CCCCHHH
T ss_conf 774898941025045987----467889781992-4103442
No 3
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=132.57 Aligned_cols=90 Identities=30% Similarity=0.703 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 44687753565337899144148--8999456688899778999985478775347999998754344589423127646
Q 000791 827 LLQGENDYKCSVCHFGGELLLCD--RCPSSFHRNCVGLEDVPDGDWFCPSCCCSICGNSNSREEVEDVVDGSVLICHQCE 904 (1282)
Q Consensus 827 ~~~~~ndd~C~VC~~gGeLIlCD--~Cp~afH~~CL~L~~vP~G~W~Cp~C~C~iCg~~~~~~~~~~~~~g~Ll~CdqCe 904 (1282)
.....++++|.+|+++|+||+|| .||++||+.||+|..+|.|+|+|+.|.|.+|++.. .+.|..|+
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~------------~~~C~~Cp 76 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAA------------VSFCEFCP 76 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBC------------CEECSSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC------------CCCCCCCC
T ss_conf 886889799984799784757799999926522518687579988889899988177989------------86747787
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 0021110268974001029999710177
Q 000791 905 LKYHRKCLQNGATDKLKTHAKETWFCSK 932 (1282)
Q Consensus 905 r~YH~~CL~~~~~~~L~e~p~~~WFCs~ 932 (1282)
++||..|+... |...+...|+|..
T Consensus 77 ~sfC~~c~~g~----l~~~~~~~~~c~~ 100 (107)
T 4gne_A 77 HSFCKDHEKGA----LVPSALEGRLCCS 100 (107)
T ss_dssp CEECTTTCTTS----CEECTTTTCEECT
T ss_pred CCHHHHCCCCC----CEECCCCCCEECC
T ss_conf 10112115873----1102788966667
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=128.02 Aligned_cols=92 Identities=29% Similarity=0.713 Sum_probs=76.8
Q ss_pred CCCCCCCCCC---------CCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7535653378---------991441488999456688899-----7789999854787-753479999987543445894
Q 000791 832 NDYKCSVCHF---------GGELLLCDRCPSSFHRNCVGL-----EDVPDGDWFCPSC-CCSICGNSNSREEVEDVVDGS 896 (1282)
Q Consensus 832 ndd~C~VC~~---------gGeLIlCD~Cp~afH~~CL~L-----~~vP~G~W~Cp~C-~C~iCg~~~~~~~~~~~~~g~ 896 (1282)
...+|.+|.. +++||.|+.|+++||.+||++ ..++.+.|+|+.| .|.+|+....+ ++.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~-------~~~ 76 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKN-------ADN 76 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCT-------TCC
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-------CCC
T ss_conf 6761310389334276899111637534499889703538889998754246530117754466686888-------565
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCH
Q ss_conf 231276460021110268974001029999710177404
Q 000791 897 VLICHQCELKYHRKCLQNGATDKLKTHAKETWFCSKKCE 935 (1282)
Q Consensus 897 Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~~WFCs~~C~ 935 (1282)
++.|++|+++||..|+.+. +.++|++.|||+. |.
T Consensus 77 ll~Cd~C~~~yH~~Cl~p~----l~~~P~~~W~C~~-C~ 110 (112)
T 3v43_A 77 MLFCDSCDRGFHMECCDPP----LTRMPKGMWICQI-CR 110 (112)
T ss_dssp CEECTTTCCEECGGGCSSC----CSSCCSSCCCCTT-TS
T ss_pred EEECCCCCCEEECCCCCCC----CCCCCCCCEECCC-CC
T ss_conf 6874899891566358999----8989998857978-78
No 5
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=103.98 Aligned_cols=100 Identities=23% Similarity=0.560 Sum_probs=66.1
Q ss_pred CCCCCCCCEEECCCCCEEECCCEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45224795370999974650010013698766888227711894301333555203665578899876556774468775
Q 000791 754 EGRITRDGIKCKCCGKVYTLSGFEDHAGSTYCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGEPHNRLKGNLLQGEND 833 (1282)
Q Consensus 754 eG~It~~GI~C~CC~k~fS~S~FE~HAG~~~~~P~~~I~L~dG~SL~~C~i~~~~~~~~~~~~~e~~sRlk~~~~~~~nd 833 (1282)
+|.. ++|.|.+|+..++++.+- .....|.-.+.+ -..|......... ...++.++
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~~----~~~~HPll~v~~-----C~~C~~~y~~~~~--------------~~d~Dg~~ 63 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQKD----SIYRHPSLQVLI-----CKNCFKYYMSDDI--------------SRDSDGMD 63 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCSS----SEEEETTTTEEE-----EHHHHHHHHHSCC--------------CBCTTSCB
T ss_pred CCCC--CCCEECCCCCCCCCCCCC----CHHCCCCCCCCC-----CHHHHHHHHCCCC--------------EECCCCCC
T ss_conf 6775--798854899865654566----321298756642-----4778988723781--------------31688887
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCC--CC-----C--CCCCCCCCCCCCCC
Q ss_conf 3565337899144148899945668889--97-----7--89999854787753
Q 000791 834 YKCSVCHFGGELLLCDRCPSSFHRNCVG--LE-----D--VPDGDWFCPSCCCS 878 (1282)
Q Consensus 834 d~C~VC~~gGeLIlCD~Cp~afH~~CL~--L~-----~--vP~G~W~Cp~C~C~ 878 (1282)
++|.+|++||+|++||.||++||..|+. +. + .|.++|+|+.|.+.
T Consensus 64 d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 64 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CEECCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCCC
T ss_conf 800003999847868998973127454888873666542468999882126685
No 6
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=103.92 Aligned_cols=113 Identities=25% Similarity=0.625 Sum_probs=78.2
Q ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 76688822771189430133355520366557889987655677446877535653378991441488999456688899
Q 000791 783 TYCNPASHIFLQDGRSLLDCQLQVLKNGNIRNFTGEPHNRLKGNLLQGENDYKCSVCHFGGELLLCDRCPSSFHRNCVGL 862 (1282)
Q Consensus 783 ~~~~P~~~I~L~dG~SL~~C~i~~~~~~~~~~~~~e~~sRlk~~~~~~~ndd~C~VC~~gGeLIlCD~Cp~afH~~CL~L 862 (1282)
+.+.++++|+|. |.+|.+|++......+..+..+....... ......++..|..|
T Consensus 110 ~~~~~~a~i~l~-g~sl~~c~i~f~~e~~~ie~~~~~~~~~~-~~~~r~~~~~C~~c----------------------- 164 (226)
T 3ask_A 110 TARELYANVVLG-DDSLNDCRIIFVDEVFKIERPGEGSPMVD-NPMRRKSGPSCKHC----------------------- 164 (226)
T ss_dssp SCEEEEEEEECS-SSEEEEEEESCTTCCBCCCCSSSSCCCCS-CCCCCCCSCCCTTT-----------------------
T ss_pred CCCCEEEEEEEC-CCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-----------------------
T ss_conf 312224688766-87543415787314332113355533334-63334578644323-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCCC-CCCCCCCCH
Q ss_conf 7789999854787753479999987543445894231276460021110268974001029999-710177404
Q 000791 863 EDVPDGDWFCPSCCCSICGNSNSREEVEDVVDGSVLICHQCELKYHRKCLQNGATDKLKTHAKE-TWFCSKKCE 935 (1282)
Q Consensus 863 ~~vP~G~W~Cp~C~C~iCg~~~~~~~~~~~~~g~Ll~CdqCer~YH~~CL~~~~~~~L~e~p~~-~WFCs~~C~ 935 (1282)
...+.|.|..|.|.+|+.... ++.++.|+.|+++||..|+.++ |..+|.+ .|||+. |.
T Consensus 165 --~~~~~w~C~~c~C~vC~~~~~--------~~~lL~CD~C~~~yH~~CL~PP----L~~vP~G~~W~Cp~-C~ 223 (226)
T 3ask_A 165 --KDDVNRLCRVCACHLCGGRQD--------PDKQLMCDECDMAFHIYCLDPP----LSSVPSEDEWYCPE-CR 223 (226)
T ss_dssp --TTCTTSCCTTTSCSSSCCCCC----------CCEECSSSCCEECSCC--CC----CCSCCSSSCCCCGG-GC
T ss_pred --CCCCCEECCCCCCCCCCCCCC--------CCCEEECCCCCCCEECCCCCCC----CCCCCCCCCCCCCC-CC
T ss_conf --578677668888868899799--------9876883899941007567887----45698998878938-74
No 7
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=1.00 E-value=1 Score=103.54 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=87.4
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999799983789951028999999853997649807766778998714799730024687544434568888645899
Q 000791 22 LPVGERVEVRSDEDGFLGSWHAGTVIASSSDCRTVKYDHLLTDAGDDNLVDIVCVSSIINSSTFADVTQSHSRGHIRPLP 101 (1282)
Q Consensus 22 fkvGd~VEV~S~eeG~rGsWF~AtVIk~~~~~~yVeY~dL~dedgs~~L~E~V~~s~~~~g~~~~~~~r~~~R~~IRP~P 101 (1282)
|-.+..|||+... |+||.|+|.+...+...|.|.+.. ...++|+.+ .|||.|
T Consensus 2 ~~~~~~VEV~~~~----G~~y~a~V~~v~~d~~~V~f~n~w------~~~~~vp~~------------------~vRlpP 53 (128)
T 3h8z_A 2 YFQGLPVEVRGSN----GAFYKGFVKDVHEDSVTIFFENNW------QSERQIPFG------------------DVRLPP 53 (128)
T ss_dssp TTTTCEEEEECTT----SCEEEEEEEEECSSEEEEEETTCT------TCCEEEEGG------------------GEECCC
T ss_pred CCCCCEEEEECCC----CCEEEEEEEEEECCCEEEEECCCC------CCCEEECHH------------------HEECCC
T ss_conf 5456489995588----989799999973894999981566------860586366------------------579389
Q ss_pred CCCCCCCCCCCCCCEEEEECCC------CEEEEEEEEEECCCCEEEEEECC---CCCEEEECCCCCCCCCCCC
Q ss_conf 9988898888999988865299------97999999980897159999199---9974998068973334212
Q 000791 102 PPVKFGKCSLPFGLCVDVYYNE------AWWEGVIFDLEDGSAERRIFFPD---LGDEMTVGIDSLRITQDWD 165 (1282)
Q Consensus 102 P~~~~~~~~~~vGd~VDa~~~d------gWWeGvV~~v~~g~~~y~V~Fpg---egdel~f~~~dLRp~leW~ 165 (1282)
|+.. ...|.+||.||||.+. |||.|+|.++. | +.|.|.+.+ +-.+ .+...+|||.-.+.
T Consensus 54 ~~~~--~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k-g-~f~~V~y~~~~~~~~E-iV~~~rlR~~n~~~ 121 (128)
T 3h8z_A 54 PADY--NKEITEGDEVEVYSRANEQEPCGWWLARVRMMK-G-DFYVIEYAACDATYNE-IVTLERLRPVNPNP 121 (128)
T ss_dssp CC------CCCTTCEEEEEECC---CCCEEEEEEEEEEE-T-TEEEEEETTC----CE-EECGGGEEECCCCC
T ss_pred CCCC--CCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEE-C-CEEEEEECCCCCCCCE-EEEHHHEEECCCCC
T ss_conf 8213--467789899999966899876752799999951-8-8999998578998105-87644457479998
No 8
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=100.87 Aligned_cols=49 Identities=43% Similarity=1.037 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 687753565337899144148899945668889--9778999985478775
Q 000791 829 QGENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCC 877 (1282)
Q Consensus 829 ~~~ndd~C~VC~~gGeLIlCD~Cp~afH~~CL~--L~~vP~G~W~Cp~C~C 877 (1282)
++.++++|.+|+++|+|++||+|+++||..|+. +..+|.|+|+|+.|.-
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 788889898889999367769999843871589998888998878684268
No 9
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=99.90 Aligned_cols=48 Identities=44% Similarity=1.080 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 87753565337899144148899945668889--9778999985478775
Q 000791 830 GENDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCC 877 (1282)
Q Consensus 830 ~~ndd~C~VC~~gGeLIlCD~Cp~afH~~CL~--L~~vP~G~W~Cp~C~C 877 (1282)
++|+++|.+|++||+|++||+|+++||.+|+. +..+|.|+|+|+.|..
T Consensus 1 ~~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 1 SPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CCSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 99999541179999056629999530811368987879998878925568
No 10
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.85 Aligned_cols=47 Identities=36% Similarity=0.930 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 753565337899144148899945668889--97789999854787753
Q 000791 832 NDYKCSVCHFGGELLLCDRCPSSFHRNCVG--LEDVPDGDWFCPSCCCS 878 (1282)
Q Consensus 832 ndd~C~VC~~gGeLIlCD~Cp~afH~~CL~--L~~vP~G~W~Cp~C~C~ 878 (1282)
+++.|.+|+++|+|++||+|+++||..|+. +..+|.|+|+|+.|...
T Consensus 1 s~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9882764799994568999983331022898756689987889270477
Done!