BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000792
(1282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LRK9|TAF1A_ARATH Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis
thaliana GN=HAF1 PE=2 SV=1
Length = 1919
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/685 (67%), Positives = 534/685 (77%), Gaps = 29/685 (4%)
Query: 577 LHAG-----AMIITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTK 631
LH G + + ++++ DFK E+VK+FY GKEL+D KSLA QNV+PNSL+HLIRTK
Sbjct: 675 LHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTK 734
Query: 632 IHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCT 691
+HL P AQKLPGENKSLRPPGAFKKKSDLS KDGHVFLMEYCEERPL+LSNAGMGANLCT
Sbjct: 735 VHLWPWAQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCEERPLMLSNAGMGANLCT 794
Query: 692 YYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFT 751
YYQKSSP DQ G LL + ++ LGNV+ LEPGDKSPFLG+I AGCSQSS+ETNMY+AP+F
Sbjct: 795 YYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAGCSQSSVETNMYKAPIFP 854
Query: 752 HKVATTDFLLVRSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYR 811
++ +TD+LLVRS KGK+S+RRIDK+ VV QQEP MEVMSPGSKNLQTY +NRMLV VYR
Sbjct: 855 QRLQSTDYLLVRSPKGKLSLRRIDKIVVVGQQEPRMEVMSPGSKNLQTYLVNRMLVYVYR 914
Query: 812 EFSAAAKRGLLPCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIP 871
EF + G I DELS F NL++AII+K +K A +RD NG+ W+ K + P
Sbjct: 915 EF--FKRGGGEHPIAADELSFLFSNLTDAIIKKNMKIIACWKRDKNGQSYWTKKDSLLEP 972
Query: 872 SEGDLRKLAYPEHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASH 931
E +L+KL PEHVCSYESM AGLYRLKHLGIT+ TLPASIS+A++QLPDEAIALAAASH
Sbjct: 973 PESELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISNALAQLPDEAIALAAASH 1032
Query: 932 IERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAM 991
IERELQITPWNLSSNFVACTNQDR NIERLEITGVGDPSGRGLGFSYVRAAPKA ++
Sbjct: 1033 IERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGLGFSYVRAAPKAPAAAGH 1092
Query: 992 VKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSS 1051
+KKKAAA RG TVTGTDADLRRLSMEAAREVL+KFNVP+E+IAKQTRWHRIAMIRKLSS
Sbjct: 1093 MKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEIIAKQTRWHRIAMIRKLSS 1152
Query: 1052 EQAASGV-------------------QLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE 1092
EQAASGV Q+QQQ R KCQEIWDRQ+ SLSA D DE S++E
Sbjct: 1153 EQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLLSLSAFDGDENESENE 1212
Query: 1093 -HSDLDSFAGDLENLLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEA 1151
+SDLDSFAGDLENLLDAEE E E + +K+DK++GVKGLKMRRRP QV+ +EEIEDEA
Sbjct: 1213 ANSDLDSFAGDLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEA 1272
Query: 1152 AEAAELCRLLMDDDEAELKKKKKKTKAQVEGGLSLAKSISGLEIVERLKKANKPAKHIAI 1211
E AELCRLLM D++ + KKKK K + G + L+ E ++KAN K I
Sbjct: 1273 TEYAELCRLLMQDEDQKKKKKKMKGVGEGMGSYPPPRPNIALQSGEPVRKANAMDKK-PI 1331
Query: 1212 TVQPNGSHTANEQ-IKDPKEEESLI 1235
+QP+ S NE IKD + +S+I
Sbjct: 1332 AIQPDASFLVNESTIKDNRNVDSII 1356
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 259/576 (44%), Positives = 355/576 (61%), Gaps = 57/576 (9%)
Query: 32 LGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCSYCLLS 91
LGF+FGNVD +GDLD DYLDEDAKEHL+A+ADKLG SL DI+ L
Sbjct: 30 LGFIFGNVDNSGDLDADYLDEDAKEHLSALADKLGSSLPDIN----------------LL 73
Query: 92 VNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLA 151
S + D EQDYD+KAEDAVDYEDIDE+Y+GPE+Q+ SEED+LLPKKEYF+ V+L
Sbjct: 74 AKSERTASDPAEQDYDRKAEDAVDYEDIDEEYDGPEVQVVSEEDHLLPKKEYFSTAVALG 133
Query: 152 ALKPTASPFDDENYDEDEELEKEHEEVDK--ETEDTTTILSGEQVECATAVPDGEKSPEG 209
+LK AS FDDE+YDE+EE E+E V+K ETE ++ E +K+ E
Sbjct: 134 SLKSRASVFDDEDYDEEEEQEEEQAPVEKSLETEKREPVVLKE-----------DKALEY 182
Query: 210 DPQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILRFSEIFGI 269
+ + L E+ M +EE+ ++L+G LD + +TPLP L VEDG VIL+FSEIF I
Sbjct: 183 EEEASILDKEDHMDT-EDVQEEEVDELLEGTLDDKGATPLPTLYVEDGMVILQFSEIFAI 241
Query: 270 HEPLKKGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFS 329
HEP +K +R+ RY T +DKY +MD+S LVE+DEEV LK G+ ++A++ Q +
Sbjct: 242 HEPPQKRDRRENRYVTCRDKYKSMDISELVEDDEEVLLKSHGRIDTHVEQADLIQLDVPF 301
Query: 330 LNDDDSELVKFGVEQDAATIS-------EHDEQRKDSCICSEPMKEESNVNPSVGWKSMP 382
+ +LVK A+TI E + +DSCI E +K++ + S +S
Sbjct: 302 PIREGLQLVK------ASTIGGITPESREFTKLGRDSCIMGELLKQDFIDDNSSLCQSQL 355
Query: 383 SPNFFPLDQHDWEENIVWDNSPAASDNSIESHEIAGADVESALMRGIELDTGQ---NNFH 439
S FPLDQH+WE I+W++SP S NS E E G + E L++G +T Q N +
Sbjct: 356 SMQVFPLDQHEWERRIIWEHSPEISGNSGEIFE-PGLEPEGMLVKGTNSETEQESLNVVN 414
Query: 440 ERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHS 499
R + + V S L E+FGS+ S +T+ +SR+HPQLLRLESQ D +NH
Sbjct: 415 SRVQVQADNNMFVPF--SANLLESFGSRGSQ-STNESTNKSRHHPQLLRLESQWD-ENHL 470
Query: 500 HAN---GIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILD 556
N G+K+ IK + DA+ RFS+ L+ RD+ + +WLD+IIW+ + + KLI D
Sbjct: 471 SGNDEAGVKK---IKRLEKDALGRFSRLVLRERDLGDEAWLDSIIWDSEKELSRSKLIFD 527
Query: 557 LQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPSD 592
LQDEQM+FEI DN++ ++ LHAGAMI++RS+K D
Sbjct: 528 LQDEQMVFEIFDNEESKNLQLHAGAMIVSRSSKSKD 563
>sp|Q67W65|TAF1_ORYSJ Transcription initiation factor TFIID subunit 1 OS=Oryza sativa
subsp. japonica GN=TAF1 PE=2 SV=1
Length = 1810
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/613 (65%), Positives = 489/613 (79%), Gaps = 24/613 (3%)
Query: 583 IITRSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLP 642
+ ++++K +FKP+E +KLF GKEL+D SLA QNVRPNS++H++RT+IHL P+AQ+LP
Sbjct: 661 VKSKASKKLEFKPSEKIKLFCSGKELQDDISLAMQNVRPNSILHVVRTEIHLWPKAQRLP 720
Query: 643 GENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQA 702
GENK LRPPGAF+KKSDLSVKDGHVFLMEYCEERPLLL+NAGM A LCTYYQK+SP DQ
Sbjct: 721 GENKPLRPPGAFRKKSDLSVKDGHVFLMEYCEERPLLLANAGMAARLCTYYQKTSPSDQT 780
Query: 703 GALLCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLV 762
L S ++ LG +L ++P DKSPFLG+I++G QS LETNMYRAPVF HKVATTD+LLV
Sbjct: 781 ATSLRSNSDGLGTMLAIDPADKSPFLGNIRSGSHQSCLETNMYRAPVFPHKVATTDYLLV 840
Query: 763 RSAKGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLL 822
RS KG +S+RRIDK+ V QQEP MEV SPG+KN+Q Y +NR+LV VYREF A K G++
Sbjct: 841 RSPKGMLSLRRIDKLYAVGQQEPHMEVFSPGTKNMQNYILNRILVYVYREFRAREKPGII 900
Query: 823 PCIGVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYP 882
P I DEL +Q P ++EAI+RK+LK CA LR+ G + + F IPSE +LR+L P
Sbjct: 901 PQIRADELPIQ-PPITEAIVRKRLKHCADLRKGPKGHLFYIQRPDFRIPSEEELRRLLTP 959
Query: 883 EHVCSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWN 942
E+VC YESMQAG YRLKHLGI +LT P ++SAM+QLPDEAI LAAA+HIERELQIT WN
Sbjct: 960 ENVCCYESMQAGQYRLKHLGIEKLTQPVGLASAMNQLPDEAIELAAAAHIERELQITSWN 1019
Query: 943 LSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGG 1002
L+SNFVACTNQD+ENIERLEITGVGDPSGRGLGFSYVR PKA VS++ KKK+AA + G
Sbjct: 1020 LTSNFVACTNQDKENIERLEITGVGDPSGRGLGFSYVRVTPKAPVSNSTHKKKSAAAK-G 1078
Query: 1003 STVTGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGV---- 1058
+TVTGTDADLRRLSM+AARE+LLKF VPEE I K TRWHRIAM+RKLSSEQAASGV
Sbjct: 1079 TTVTGTDADLRRLSMDAARELLLKFGVPEEQIDKLTRWHRIAMVRKLSSEQAASGVTMDE 1138
Query: 1059 ---------------QLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE-HSDLDSFAGD 1102
QLQQQT+ KCQEIWDRQ+QSLSA D +E GSD+E +SDLDSFAGD
Sbjct: 1139 IPVSKFARGQRMSFLQLQQQTKEKCQEIWDRQIQSLSAMDGNENGSDTEANSDLDSFAGD 1198
Query: 1103 LENLLDAEEFEEEE-SNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLL 1161
LENLLDAEEF++E+ N D + DK++G++GLKMRR Q Q EEI+D+ AEAA L L
Sbjct: 1199 LENLLDAEEFDDEDVGNTDIRSDKMDGMRGLKMRRCHTQSQINEEIQDDVAEAA-LVEKL 1257
Query: 1162 MDDDEAELKKKKK 1174
+++ ++++K+KK+
Sbjct: 1258 LEESDSDMKRKKQ 1270
Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 225/581 (38%), Positives = 317/581 (54%), Gaps = 91/581 (15%)
Query: 27 GGNRLLGFMFGNVDYAGDLDVDYLDEDAKEHLAAVADKLGPSLTDIDVWNSQSCFQLFCS 86
GGN LGFMFGNVD +GDLD DYLDEDAKEHL A+ADKLGPSL DID+ +
Sbjct: 30 GGNHFLGFMFGNVDDSGDLDADYLDEDAKEHLFALADKLGPSLKDIDLIKPSAA------ 83
Query: 87 YCLLSVNSPQPPVDAVEQDYDKKAEDAVDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAA 146
P D EQDYD KAEDAVDYEDIDE+Y+GPE++ A+EED+LL KK+YF++
Sbjct: 84 -----------PTDPSEQDYDAKAEDAVDYEDIDEEYDGPEVEAATEEDHLLSKKDYFSS 132
Query: 147 EVSLAALKPTASPFDDENYDEDEELEKEHEEVDKETEDTTTILSGEQVECATAVPDGEKS 206
A++ S FD+ENYDEDEE +++ T S EQ++ A
Sbjct: 133 NAVYASVNSKVSVFDEENYDEDEEPPNDNDLPSDNIVQNCTSASAEQLDMA--------- 183
Query: 207 PEGD----PQVGSLGAEEEMTAGVKDYDEELADILKGPLDGQVSTPLPVLCVEDGKVILR 262
P D ++ S +E E + + + +E+ + + L+ + +T LPVLC+EDG VIL+
Sbjct: 184 PSNDNLAVEKMSSSLSEPEESFESEAFQKEM--VAEEQLESKTATSLPVLCIEDGSVILK 241
Query: 263 FSEIFGIHEPLKKGKKRDQRYSTPKDK-YNTMDVSSLVEEDEEVYLKGSGQGFPLFKEAN 321
FSEIFG EP++K K R+ P +K + + +VEEDEEV+L+ + Q K
Sbjct: 242 FSEIFGAQEPVRKAKM--DRHKRPVNKELQITNFTDIVEEDEEVFLRSTIQNLSALKHIK 299
Query: 322 IFQHGIFSLNDDDSELVKFGVEQDAATISEHDEQRKDSCICSEPMKEESNVNPSVGWKSM 381
+ + S +D+ + V + KDSC+ +PMK++ + +S
Sbjct: 300 TNDNFVESDSDESTSDVALRL--------------KDSCLSEQPMKDK---DIPTAVQSP 342
Query: 382 PSPNFFPLDQHDWEENIVWDNSP-----------AASDNSIESHEIAGADVESALMRGIE 430
P+F+PL+ +WE +IVW NSP A S S++ H D + G
Sbjct: 343 VFPDFYPLEHENWENDIVWGNSPTTAIQPCLTSCAISKESLDDH---NEDQAEGYVSGC- 398
Query: 431 LDTGQNNFHERSTSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLE 490
D QN FH +S V+++ FG D+TS+ E+ Y P LR E
Sbjct: 399 WDV-QNKFH----------------SSSVMADPFGHTEIPDSTSYRSPENSYSP--LRKE 439
Query: 491 SQLDLDNHSHANGIKENVSIKLCQSDAVKRFSKHSLQNRDMMEGSWLDNIIWEPVDAVGK 550
+ + ++ N I + V I D + +K SL N++++EGSWLDNI+W+P + V K
Sbjct: 440 TAQENNSLDEPNNITQPVKI-----DTTRHLNKLSLLNKELLEGSWLDNIVWDPSEDVPK 494
Query: 551 PKLILDLQDEQMLFEILDNKDDEHPLLHAGAMIITRSAKPS 591
PKLI DL+D+ MLFEILD K+ +H HA AMI+TR K S
Sbjct: 495 PKLIFDLKDDHMLFEILDEKNGDHLRSHARAMIVTRPMKTS 535
>sp|Q6PUA2|TAF1B_ARATH Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis
thaliana GN=HAF2 PE=2 SV=1
Length = 1786
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/600 (66%), Positives = 469/600 (78%), Gaps = 29/600 (4%)
Query: 586 RSAKPSDFKPAESVKLFYLGKELEDHKSLADQNVRPNSLIHLIRTKIHLLPRAQKLPGEN 645
++++ DFK E+VK+FY+GKELED KSLA+QNV+PNSL+HL+RTK+HL P AQKLPGEN
Sbjct: 602 KASRKLDFKETEAVKMFYMGKELEDEKSLAEQNVQPNSLVHLLRTKVHLWPWAQKLPGEN 661
Query: 646 KSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGAL 705
KSLRPPGAFKKKSDLS +DGHVFLMEYCEERPL+LSNAGMGANLCTYYQKSSP DQ G L
Sbjct: 662 KSLRPPGAFKKKSDLSNQDGHVFLMEYCEERPLMLSNAGMGANLCTYYQKSSPEDQHGNL 721
Query: 706 LCSGNNCLGNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSA 765
L + ++ LG+V+ LE G+KSPFLG++ GCSQSS+ETNMY+APVF H++ +TD+LLVRSA
Sbjct: 722 LRNQSDTLGSVIILEHGNKSPFLGEVHGGCSQSSVETNMYKAPVFPHRLQSTDYLLVRSA 781
Query: 766 KGKISIRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCI 825
KGK+S+RRI+K+ V QQEP ME+MSP SKNL Y +NRM+ VYREF + I
Sbjct: 782 KGKLSLRRINKIVAVGQQEPRMEIMSPASKNLHAYLVNRMMAYVYREFKHRDR------I 835
Query: 826 GVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHV 885
DELS F N+S+A +RK ++ C+ L RD NGK WS KR F G L L PE V
Sbjct: 836 AADELSFSFSNISDATVRKYMQVCSDLERDANGKACWSKKRKFDKIPLG-LNTLVAPEDV 894
Query: 886 CSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSS 945
CSYESM AGL+RLKHLGIT+ TLPASIS+A++QLPDE I AAASHI RELQITPWNLSS
Sbjct: 895 CSYESMLAGLFRLKHLGITRFTLPASISTALAQLPDERI--AAASHIARELQITPWNLSS 952
Query: 946 NFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTV 1005
+FV C Q RENIERLEITGVGDPSGRGLGFSYVR APK+S +S KKKAAA RG TV
Sbjct: 953 SFVTCATQGRENIERLEITGVGDPSGRGLGFSYVRVAPKSSAASEHKKKKAAACRGVPTV 1012
Query: 1006 TGTDADLRRLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASG-------- 1057
TGTDAD RRLSMEAAREVLLKFNVP+E+IAKQT+ HR AMIRK+SSEQAASG
Sbjct: 1013 TGTDADPRRLSMEAAREVLLKFNVPDEIIAKQTQRHRTAMIRKISSEQAASGGKVGPTTV 1072
Query: 1058 -----------VQLQQQTRGKCQEIWDRQVQSLSAADDDEIGSDSE-HSDLDSFAGDLEN 1105
+QLQQQ R C EIWDRQ SLSA DDD S++E +SDLDSF GDLE+
Sbjct: 1073 GMFSRSQRMSFLQLQQQAREMCHEIWDRQRLSLSACDDDGNESENEANSDLDSFVGDLED 1132
Query: 1106 LLDAEEFEEEESNYDTKHDKVEGVKGLKMRRRPIQVQAEEEIEDEAAEAAELCRLLMDDD 1165
LLDAE+ E E + + ++K++GVKGLKMRR P QV+ +EEIEDEAAE ELCRLLM D+
Sbjct: 1133 LLDAEDGGEGEESNKSMNEKLDGVKGLKMRRWPSQVEKDEEIEDEAAEYVELCRLLMQDE 1192
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 200/491 (40%), Positives = 282/491 (57%), Gaps = 31/491 (6%)
Query: 114 VDYEDIDEQYEGPEIQIASEEDYLLPKKEYFAAEVSLAALKPTASPFDDENYDEDEELEK 173
VDY DE+Y+GPE+Q+ +EED+LLPK+EY +A +L+ L AS FDDE+YDE EK
Sbjct: 5 VDYGSNDEEYDGPELQVVTEEDHLLPKREYLSAAFALSGLNSRASVFDDEDYDEQGGQEK 64
Query: 174 EHEEVDKETEDTTTILSGEQVECATAVPDGEKSPEGDPQVGSLGAEEEMTAGVKDYDEEL 233
EH V+K S + E V EK + + + LG + +M G D EEL
Sbjct: 65 EHVPVEK---------SFDSEEREPVVLKEEKPVKHEKEASILGNKNQMDTG--DVQEEL 113
Query: 234 A-DILKGPLDGQVSTPLPVLCVED-GKVILRFSEIFGIHEPLKKGKKRDQRYSTPKDKYN 291
+ + LD + TPLP L +ED G VIL+FSEIF I EP KK +KR+ R T +DKY
Sbjct: 114 VVGLSEATLDEKRVTPLPTLYLEDDGMVILQFSEIFAIQEPQKKRQKREIRCITYRDKYI 173
Query: 292 TMDVSSLVEEDEEVYLKGSGQGFPLFKEANIFQHGIFSLNDDDSELVKFGVEQDAATIS- 350
+MD+S L+E+DEEV LK G+ K+ + Q + + S+LVK G+ +D + S
Sbjct: 174 SMDISELIEDDEEVLLKSHGRIDTHGKKTDQIQLDVPLPIRERSQLVKSGIVRDTTSESR 233
Query: 351 EHDEQRKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWDNSPAASDNS 410
E + +DSCI E +K++ + S +S + FPLDQ +WE I+W+ SP S N
Sbjct: 234 EFTKLGRDSCIMGELLKQDLKDDNSSLCQSQLTMEVFPLDQQEWEHLILWEISPQFSANC 293
Query: 411 IESHEIAGADVESALMRGIELDTGQNNFHERSTSPNEKDCIVNMQ--NSPVLS------- 461
E + + +ESA GI + +N S N + Q N+ +L
Sbjct: 294 CEGFK---SGLESA---GIMVQVRASNSVTEQESLNVMNSGGQTQGDNNNMLEPFFVNPL 347
Query: 462 ETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLDNHSHANGIKENVSIKLCQSDAVKRF 521
E+FGS+ S +T+ +SR+HPQLLRLESQ D D H NG ++K SDA R
Sbjct: 348 ESFGSRGSQ-STNESTNKSRHHPQLLRLESQWDED-HYRENGDAGRENLKQLNSDARGRL 405
Query: 522 SKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLILDLQDEQMLFEILDNKDDEHPLLHAGA 581
S +LQ+RDM + SWLD+IIWE + + KLI DLQDEQM+FE+ +NK+ ++ LHAG+
Sbjct: 406 SGLALQDRDMWDESWLDSIIWESDKDLSRSKLIFDLQDEQMIFEVPNNKERKYLQLHAGS 465
Query: 582 MIITRSAKPSD 592
I++RS+K D
Sbjct: 466 RIVSRSSKSKD 476
>sp|Q54DH8|TAF1_DICDI Transcription initiation factor TFIID subunit 1 OS=Dictyostelium
discoideum GN=taf1 PE=3 SV=1
Length = 2310
Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 243/443 (54%), Gaps = 31/443 (6%)
Query: 657 KSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNV 716
KSDLS +DG + L+EY E+ P L+SN GMG + YY+K + D L N G +
Sbjct: 966 KSDLSARDGRLVLIEYTEQHPPLVSNVGMGLRIRNYYKKKNTHDTGPKDL---NFEDGEL 1022
Query: 717 LTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGK-ISIRRID 775
+ L+ ++SPFLGDI G + S+ N+++ P+ H A TDFLLV+S GK IR +
Sbjct: 1023 VMLDNNEESPFLGDINPGQTIQSVVNNLFKVPIHKHNSANTDFLLVKSRDGKRWYIRDVG 1082
Query: 776 KVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFP 835
+ Q P +EV +P S+N + +R+ +YR+F K + + ++ FP
Sbjct: 1083 PIYAAGQILPEVEVPAPNSRNANMFLKSRLQAYIYRQF--LKKSNPQRRLKITDICSAFP 1140
Query: 836 NLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGL 895
+ SE IRK+LK+CA +R G+ W++K F +P+E + +KL PE V S+ESM GL
Sbjct: 1141 SQSETSIRKRLKDCADFQRGGDDSGWWTVKDNFTLPTEEEFQKLVTPEAVVSFESMLIGL 1200
Query: 896 YRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDR 955
RL+ GI T P +I + + L DE + +E EL ITPWNL+ +F++
Sbjct: 1201 QRLQDNGIIHFTAPGTIPTILGNLDDEDPIKKSIKPVEDELSITPWNLTGSFLSAM---- 1256
Query: 956 ENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRL 1015
+ RL+I DP+GR +SY++ P+ V+ K A + + VTGTDADLR+L
Sbjct: 1257 QGKGRLQIIS-DDPTGREDEYSYLK-MPQKVVNQKQKAIKLALQK--NQVTGTDADLRKL 1312
Query: 1016 SMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASGVQLQQQT---RG------ 1066
S+ A++ VLL+ V EE I K RW RI ++RK SSE A + T RG
Sbjct: 1313 SLSASKTVLLELGVDEETINKLARWQRIDLVRKKSSEAALASNSNAAMTKFARGSRYSLD 1372
Query: 1067 --------KCQEIWDRQVQSLSA 1081
+CQ ++D Q+++++
Sbjct: 1373 HQNLQYKEQCQLVFDNQIKAIAG 1395
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 518 VKRFSKHSLQNRDMMEGSWLDNIIWE----PVDAVGKPKLILDLQDEQMLFE 565
+ ++S + N+++ G W+DNIIW+ P LILDL D +M FE
Sbjct: 698 IDKWSLFPISNQELENGDWIDNIIWDESMVPEKIQQVSMLILDLNDREMYFE 749
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 260 ILRFSEIFGIHEPLK--KGKKRDQRYSTPKDKYNTMDVSSLVEEDEEVYLKGSGQGFPLF 317
IL+FS++F P K + K R R+STP+ T++ S +E DE + + P
Sbjct: 320 ILKFSQLFAPKFPDKPTRKKSRKTRFSTPQ----TLNDDS-IETDELLLWNQPSKKQP-- 372
Query: 318 KEANIFQHGIFSLNDDDSELVKFGV----------EQDAATISE------------HDEQ 355
+I + I ++ +L+K E+D T S
Sbjct: 373 -PPSIIKKPITEIDSITKQLLKSNAGITSSTGGGGEEDTLTSSNTTTPTLTSMQLYQAAA 431
Query: 356 RKDSCICSEPMKEESNVNPSVGWKSMPSPNFFPLDQHDWEENIVWD 401
+D EP++E + + +P N+ L Q +WE+NI+WD
Sbjct: 432 EEDEEYVPEPLRETEDEEIMTMFYMVPDSNYHSLQQVNWEDNIIWD 477
>sp|P21675|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 OS=Homo sapiens
GN=TAF1 PE=1 SV=2
Length = 1872
Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 242/472 (51%), Gaps = 46/472 (9%)
Query: 654 FKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCL 713
+ DL+ KDG + L EY EE L+ GM + YY K PG GA C
Sbjct: 665 MRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYY-KRKPGKDPGAPDCK----Y 719
Query: 714 GNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRR 773
G + SPFLG + G + E N++RAP++ HK+ TDFL++R+ +G IR
Sbjct: 720 GETVYCH---TSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQG-YYIRE 775
Query: 774 IDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQ 833
+ + VV QQ PL EV P SK T+ + + V +YR F + R I ++++
Sbjct: 776 LVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRR--IRMEDIKKA 833
Query: 834 FPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQA 893
FP+ SE+ IRK+LK CA +R G W +K F +P+E ++R + PE C+Y SM A
Sbjct: 834 FPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIA 893
Query: 894 GLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQ 953
RLK G + + A P+E I+ E++ PWN + F+A
Sbjct: 894 AEQRLKDAGYGEKSFFA---------PEEENEEDFQMKIDDEVRTAPWNTTRAFIAAM-- 942
Query: 954 DRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLR 1013
+ LE+TGV DP+G G GFSYV+ K + K TVTGTDADLR
Sbjct: 943 --KGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQ----KDDKEPQPVKKTVTGTDADLR 996
Query: 1014 RLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASG---------------V 1058
RLS++ A+++L KF VPEE I K +RW I ++R +S+EQA SG
Sbjct: 997 RLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVA 1056
Query: 1059 QLQQQTRGKCQEIWDRQVQSLSAAD---DDEIGSDSEHSDLDSFAGDLENLL 1107
+ Q++ + +CQ I+D Q + LS+ + D S +E SD + ++EN+L
Sbjct: 1057 EHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENML 1108
Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 521 FSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLI------LDLQDEQMLFEILDNKDD 572
+S + N D++ G W DNIIW DA P+L+ LD DE ++ EI D K++
Sbjct: 465 YSIFPIDNEDLVYGRWEDNIIW---DAQAMPRLLEPPVLTLDPNDENLILEIPDEKEE 519
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 23/110 (20%)
Query: 18 DEEEYEDVSGGN--RLLGFMFGNVDYAGDLDVD-YLDEDAKEHLAAVADKLGPSLTDIDV 74
D + ED +GG L GF+FGN++ AG L+ + LD++ K+HLA + SL
Sbjct: 23 DTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGESVLDDECKKHLAGLGALGLGSLI---- 78
Query: 75 WNSQSCFQLFCSYCLLSVNSPQPPVDAV---EQDYDKKAEDAVDYEDIDE 121
L+ N D ++ + + EDAVDY DI+E
Sbjct: 79 -------------TELTANEELTGTDGALVNDEGWVRSTEDAVDYSDINE 115
>sp|Q60544|TAF1_MESAU Transcription initiation factor TFIID subunit 1 OS=Mesocricetus
auratus GN=TAF1 PE=2 SV=1
Length = 1865
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 241/467 (51%), Gaps = 46/467 (9%)
Query: 659 DLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLT 718
DL+ KDG + L EY EE L+ GM + YY K PG GA C G +
Sbjct: 665 DLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYY-KRKPGKDPGAPDCK----YGETVY 719
Query: 719 LEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVA 778
SPFLG + G + E N++RAP++ HK+ TDFL++R+ +G IR + +
Sbjct: 720 CH---TSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQG-YYIRELVDIF 775
Query: 779 VVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLS 838
VV QQ PL EV P SK T+ + + V +YR F + R I ++++ FP+ S
Sbjct: 776 VVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRR--IRMEDIKKAFPSHS 833
Query: 839 EAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRL 898
E+ IRK+LK CA +R G W +K F +P+E ++R + PE C+Y SM A RL
Sbjct: 834 ESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRL 893
Query: 899 KHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENI 958
K G + + A P+E I+ E++ PWN + F+A +
Sbjct: 894 KDAGYGEKSFFA---------PEEENEEDFQMKIDDEVRTAPWNTTRAFIAAM----KGK 940
Query: 959 ERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSME 1018
LE+TGV DP+G G GFSYV+ K + K TVTGTDADLRRLS++
Sbjct: 941 CLLEVTGVADPTGCGEGFSYVKIPNKPTQQ----KDDKEPQPVKKTVTGTDADLRRLSLK 996
Query: 1019 AAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASG---------------VQLQQQ 1063
A+++L KF VPEE I K +RW I ++R +S+EQA SG + Q++
Sbjct: 997 NAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQER 1056
Query: 1064 TRGKCQEIWDRQVQSLSAAD---DDEIGSDSEHSDLDSFAGDLENLL 1107
+ +CQ I+D Q + LS+ + D S +E SD + ++EN+L
Sbjct: 1057 YKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENML 1103
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 521 FSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLI------LDLQDEQMLFEILDNKDD 572
+S + N D++ G W DNIIW DA P+++ LD DE ++ EI D K++
Sbjct: 460 YSIFPIDNEDLVYGRWEDNIIW---DAQAMPRILEPPVLTLDPNDENLILEIPDEKEE 514
>sp|Q80UV9|TAF1_MOUSE Transcription initiation factor TFIID subunit 1 OS=Mus musculus
GN=Taf1 PE=2 SV=2
Length = 1891
Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 241/467 (51%), Gaps = 46/467 (9%)
Query: 659 DLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLT 718
DL+ KDG + L EY EE L+ GM + YY K PG GA C G +
Sbjct: 691 DLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYY-KRKPGKDPGAPDCK----YGETVY 745
Query: 719 LEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVA 778
SPFLG + G + E N++RAP++ HK+ +DFL++R+ +G IR + +
Sbjct: 746 CH---TSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPESDFLIIRTRQGYF-IRELVDIF 801
Query: 779 VVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLS 838
VV QQ PL EV P SK T+ + + V +YR F + R I ++++ FP+ S
Sbjct: 802 VVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRR--IRMEDIKKAFPSHS 859
Query: 839 EAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRL 898
E+ IRK+LK CA +R G W +K F +P+E ++R + PE C+Y SM A RL
Sbjct: 860 ESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRL 919
Query: 899 KHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENI 958
K G + + A P+E I+ E++ PWN + F+A +
Sbjct: 920 KDAGYGEKSFFA---------PEEENEEDFQMKIDDEVRTAPWNTTRAFIAAM----KGK 966
Query: 959 ERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSME 1018
LE+TGV DP+G G GFSYV+ K + K TVTGTDADLRRLS++
Sbjct: 967 CLLEVTGVADPTGCGEGFSYVKIPNKPTQQ----KDDKEPQPVKKTVTGTDADLRRLSLK 1022
Query: 1019 AAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASG---------------VQLQQQ 1063
A+++L KF VPEE I K +RW I ++R +S+EQA SG + Q++
Sbjct: 1023 NAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQER 1082
Query: 1064 TRGKCQEIWDRQVQSLSAAD---DDEIGSDSEHSDLDSFAGDLENLL 1107
+ +CQ I+D Q + LS+ + D S +E SD + ++EN+L
Sbjct: 1083 YKEECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENML 1129
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 521 FSKHSLQNRDMMEGSWLDNIIWEPVDA---VGKPKLILDLQDEQMLFEILDNKDD 572
+S + N D++ G W DNIIW+ + + P L LD DE ++ EI D K++
Sbjct: 486 YSIFPIDNEDLVYGRWEDNIIWDAQNMPRILEPPVLTLDPNDENLILEIPDEKEE 540
>sp|Q8IZX4|TAF1L_HUMAN Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens
GN=TAF1L PE=1 SV=1
Length = 1826
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 171/484 (35%), Positives = 248/484 (51%), Gaps = 54/484 (11%)
Query: 659 DLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLT 718
DL+ KDG + L EY EE L+ GM + YY K PG GA C G +
Sbjct: 689 DLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYY-KRKPGKDPGAPDCK----YGETVY 743
Query: 719 LEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRRIDKVA 778
SPFLG + G +LE N++RAPV+ HK+ TDFL++R+ +G IR + +
Sbjct: 744 CH---TSPFLGSLHPGQLLQALENNLFRAPVYLHKMPETDFLIIRTRQG-YYIRELVDIF 799
Query: 779 VVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLS 838
VV QQ PL EV P S+ + + + V +YR F + R I ++++ FP+ S
Sbjct: 800 VVGQQCPLFEVPGPNSRRANMHIRDFLQVFIYRLFWKSKDRPRR--IRMEDIKKAFPSHS 857
Query: 839 EAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRL 898
E+ IRK+LK CA +R G W +K F +P+E ++R PE C+Y SM A RL
Sbjct: 858 ESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAKVSPEQCCAYYSMIAAKQRL 917
Query: 899 KHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENI 958
K G + + A P+E I+ E+ PWN + F+A +
Sbjct: 918 KDAGYGEKSFFA---------PEEENEEDFQMKIDDEVHAAPWNTTRAFIAAM----KGK 964
Query: 959 ERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLRRLSME 1018
LE+TGV DP+G G GFSYV+ P K+ A + TVTGTDADLRRLS++
Sbjct: 965 CLLEVTGVADPTGCGEGFSYVKI-PNKPTQQKDDKEPQAVKK---TVTGTDADLRRLSLK 1020
Query: 1019 AAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASG---------------VQLQQQ 1063
A+++L KF VPEE I K +RW I ++R +S+EQA SG + Q++
Sbjct: 1021 NAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQAHSGEGPMSKFARGSRFSVAEHQER 1080
Query: 1064 TRGKCQEIWDRQVQSLSAADDDEIGSDS---EHSDLDSFAGDLENLLD--------AEEF 1112
+ +CQ I+D Q + LS+ + +DS E SD + ++EN+L + E+
Sbjct: 1081 YKEECQRIFDLQNKVLSSTEVLSTDTDSISAEDSDFEEMGKNIENMLQNKKTSSQLSREW 1140
Query: 1113 EEEE 1116
EE+E
Sbjct: 1141 EEQE 1144
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 521 FSKHSLQNRDMMEGSWLDNIIWEPVDAVGKPKLI------LDLQDEQMLFEILDNKDD 572
+S + N D++ G W DNIIW DA P+L+ LD DE ++ EI D K++
Sbjct: 484 YSIFPIDNEDLVYGRWEDNIIW---DAQAMPRLLEPPVLALDPNDENLILEIPDEKEE 538
>sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1 OS=Drosophila
melanogaster GN=Taf1 PE=1 SV=3
Length = 2129
Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 234/445 (52%), Gaps = 44/445 (9%)
Query: 654 FKKKSDLSVKDGHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCL 713
+ DLS +DG + L E+CEE P L++ GM + + YY++ + D G
Sbjct: 710 MRNPEDLSGRDGDIVLAEFCEEHPPLINQVGMCSKIKNYYKRKAEKDSGPQDFVYGEVAF 769
Query: 714 GNVLTLEPGDKSPFLGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKISIRR 773
+ SPFLG + G ++E NMYRAP++ HK+A DFL++R+ + IR
Sbjct: 770 AHT--------SPFLGILHPGQCIQAIENNMYRAPIYPHKMAHNDFLVIRT-RNNYWIRS 820
Query: 774 IDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQ 833
++ + V Q+ PL EV P SK ++ + + V +YR F + R I +D++
Sbjct: 821 VNSIYTVGQECPLYEVPGPNSKRANNFTRDFLQVFIYRLFWKS--RDNPRRIRMDDIKQA 878
Query: 834 FPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQA 893
FP SE+ IRK+LK+CA +R G W +K F +PSE ++R + PE C+Y SM A
Sbjct: 879 FPAHSESSIRKRLKQCADFKRTGMDSNWWVIKPEFRLPSEEEIRAMVSPEQCCAYFSMIA 938
Query: 894 GLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQ 953
RLK G + L A P E A ++ E+++ PWN + ++ Q
Sbjct: 939 AEQRLKDAGYGEKFLFA---------PQEDDDEEAQLKLDDEVKVAPWNTTRAYI----Q 985
Query: 954 DRENIERLEITGVGDPSGRGLGFSYVRAAPKASVSSAMVKKKAAANRGGSTVTGTDADLR 1013
L+++G DP+G G GFSYVR K + + K+ ++ +VTGTDADLR
Sbjct: 986 AMRGKCLLQLSGPADPTGCGEGFSYVRVPNKPTQT-----KEEQESQPKRSVTGTDADLR 1040
Query: 1014 RLSMEAAREVLLKFNVPEEMIAKQTRWHRIAMIRKLSSEQAASG---------------V 1058
RL ++ A+E+L +F VPEE I K +RW I ++R LS+E+A +G
Sbjct: 1041 RLPLQRAKELLRQFKVPEEEIKKLSRWEVIDVVRTLSTEKAKAGEEGMDKFSRGNRFSIA 1100
Query: 1059 QLQQQTRGKCQEIWDRQVQSLSAAD 1083
+ Q++ + +CQ I+D Q + L++++
Sbjct: 1101 EHQERYKEECQRIFDLQNRVLASSE 1125
>sp|Q09813|T111_SCHPO Putative transcription initiation factor TFIID 111 kDa subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC2G11.14 PE=1 SV=1
Length = 979
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 32/330 (9%)
Query: 666 HVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNNCLGNVLTLEPGDKS 725
H L+E+ EE P +LSNAGM + + YY+K + D++ L G + + L+ D+S
Sbjct: 463 HAILVEFSEEHPAVLSNAGMASRIVNYYRKKNEQDESRPKLEVGESHV-----LDVQDRS 517
Query: 726 PF--LGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKG---KISIRRIDKVAVV 780
PF G ++ G +L M RAP+F H+V TDF+L+R++ K ++ I+ + V
Sbjct: 518 PFWNFGSVEPGEITPTLYNKMIRAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVS 577
Query: 781 AQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCIGVDELSVQFPNLSEA 840
Q P+ +V P S+ + T S NR+ + V+R + GL + +LS F + +E
Sbjct: 578 GQTFPVTDVPGPHSRKVTTASKNRLKMLVFRLIRRSPNGGLF----IRQLSKHFSDQNEM 633
Query: 841 IIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHVCSYESMQAGLYRLKH 900
IR++LKE ++ G+G W +K +P E R + PE VC ESMQ G+ +L+
Sbjct: 634 QIRQRLKEFMEYKKKGDGPGYWKLKSNEVVPDEAGTRSMVSPETVCLLESMQVGVRQLED 693
Query: 901 LGITQLTLPASISSAMSQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIER 960
G + T+ + P E + + PW + NF+ T +
Sbjct: 694 AGYGK-TMDEINDDEDEEQPAEQL-------------LAPWITTRNFINAT----QGKAM 735
Query: 961 LEITGVGDPSGRGLGFSYVRAAPKASVSSA 990
L + G GDP+G G G+S++R + K A
Sbjct: 736 LTLFGEGDPTGIGEGYSFIRTSMKGGFKPA 765
>sp|P46677|TAF1_YEAST Transcription initiation factor TFIID subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF1 PE=1
SV=1
Length = 1066
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 165/341 (48%), Gaps = 43/341 (12%)
Query: 653 AFKKKSDLSVKD-GHVFLMEYCEERPLLLSNAGMGANLCTYYQKSSPGDQAGALLCSGNN 711
+F DL++ D V+LMEY E+ P+ LS GM L YY+K++ D L G
Sbjct: 529 SFSTSQDLTIGDTAPVYLMEYSEQTPVALSKFGMANKLINYYRKANEQDTLRPKLPVGET 588
Query: 712 CLGNVLTLEPGDKSPF--LGDIKAGCSQSSLETNMYRAPVFTHKVATTDFLLVRSAKGKI 769
+VL ++ DKSPF G ++ G +L NM RAPVF H ++ TDFLL +S+ I
Sbjct: 589 ---HVLGVQ--DKSPFWNFGFVEPGHIVPTLYNNMIRAPVFKHDISGTDFLLTKSSGFGI 643
Query: 770 S----IRRIDKVAVVAQQEPLMEVMSPGSKNLQTYSINRMLVNVYREFSAAAKRGLLPCI 825
S +R I+ + V Q P+ E+ P S+ + + R+ + +YR + + I
Sbjct: 644 SNRFYLRNINHLFTVGQTFPVEEIPGPNSRKVTSMKATRLKMIIYRILNHNHSK----AI 699
Query: 826 GVDELSVQFPNLSEAIIRKKLKECAFLRRDGNGKQVWSMKRTFHIPSEGDLRKLAYPEHV 885
+D ++ FP+ R+K+KE +RDG K +W +K + ++ L PE +
Sbjct: 700 SIDPIAKHFPDQDYGQNRQKVKEFMKYQRDGPEKGLWRLKDDEKLLDNEAVKSLITPEQI 759
Query: 886 CSYESMQAGLYRLKHLGITQLTLPASISSAMSQLPDEAIALAAASHIER-ELQITPWNLS 944
ESM GL Q ++ A S ++ E + PWN++
Sbjct: 760 SQVESMSQGL----------------------QFQEDNEAYNFDSKLKSLEENLLPWNIT 797
Query: 945 SNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKA 985
NF+ T Q R I +I GVGDP+G G GFS+++ + K
Sbjct: 798 KNFINST-QMRAMI---QIHGVGDPTGCGEGFSFLKTSMKG 834
>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2
Length = 658
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI-RTKIHLLPRAQKLPGENKSL--RPP 651
P + +L + GK+LED ++L+D N++ S +HL+ R + + + L G+ +L P
Sbjct: 569 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628
Query: 652 GAFKKKSDLSVKDGHVFL 669
KK +DG FL
Sbjct: 629 NTIKKSKQ---EDGRTFL 643
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 417 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 493 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 37.7 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L Y GK+LED ++LAD N++ S +H++
Sbjct: 37 PVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMV 70
>sp|P0CG86|RS271_HORVU Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1
PE=3 SV=1
Length = 155
Score = 37.4 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>sp|Q9ARZ9|R27AA_ORYSJ Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa subsp.
japonica GN=RPS27AA PE=2 SV=1
Length = 155
Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>sp|P0CG87|RS272_HORVU Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB2
PE=3 SV=1
Length = 155
Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>sp|Q9UT83|MUG28_SCHPO Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug28 PE=1 SV=1
Length = 609
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 15/137 (10%)
Query: 397 NIVWDNSPAASDNSIESHEIAGADVES--ALMRGIELDTGQNNFHERSTSPNEKDCIVNM 454
N+V N P D E G + S A+ + D +N S PN KD
Sbjct: 163 NLVQSNPPKVHDKENAFAEATGTSILSSKAVQTLLVSDFTENEPKHLSIRPNCKD----- 217
Query: 455 QNSPVLSETFGSKSSSDNTSHLFTESRYHP------QLLRLESQLDLDNHS-HANGIKEN 507
N+P +S TF +NT HL +S + P LL Q DN S GI N
Sbjct: 218 NNTPSISNTFIEPYKENNTEHLHLKSAFEPCQMMPGMLLEQNPQFLYDNPSIFVIGIL-N 276
Query: 508 VSIKLCQSDAVKRFSKH 524
+ +K+ + FS H
Sbjct: 277 LPLKVSPVELYNEFSNH 293
>sp|Q9FHQ6|UBQ9_ARATH Polyubiquitin 9 OS=Arabidopsis thaliana GN=UBQ9 PE=3 SV=1
Length = 322
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 191 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 224
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+L+D ++LAD N++ S +HL+
Sbjct: 115 PPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV 148
>sp|Q58G87|UBQ3_ORYSJ Polyubiquitin 3 OS=Oryza sativa subsp. japonica GN=UBQ3 PE=2 SV=2
Length = 381
Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 36.2 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>sp|Q3E7T8|UBQ14_ARATH Polyubiquitin 14 OS=Arabidopsis thaliana GN=UBQ14 PE=1 SV=2
Length = 305
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>sp|P16709|UBIL_NPVAC Ubiquitin-like protein OS=Autographa californica nuclear
polyhedrosis virus GN=V-UBI PE=3 SV=2
Length = 77
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED K++AD N++ S +H++
Sbjct: 37 PVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 70
>sp|P0CH32|UBQ4_ARATH Polyubiquitin 4 OS=Arabidopsis thaliana GN=UBQ4 PE=1 SV=1
Length = 382
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>sp|Q1EC66|UBQ3_ARATH Polyubiquitin 3 OS=Arabidopsis thaliana GN=UBQ3 PE=1 SV=1
Length = 306
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++LAD N++ S +HL+
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>sp|P68203|RS27A_SPOFR Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda PE=2
SV=2
Length = 156
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>sp|P29504|RS27A_MANSE Ubiquitin-40S ribosomal protein S27a OS=Manduca sexta PE=2 SV=2
Length = 155
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>sp|P68202|RS27A_PLUXY Ubiquitin-40S ribosomal protein S27a OS=Plutella xylostella PE=2
SV=2
Length = 155
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 595 PAESVKLFYLGKELEDHKSLADQNVRPNSLIHLI 628
P + +L + GK+LED ++L+D N++ S +HL+
Sbjct: 37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>sp|Q9DED5|CPEB1_CARAU Cytoplasmic polyadenylation element-binding protein 1 OS=Carassius
auratus GN=cpeb1 PE=2 SV=1
Length = 559
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 389 LDQHDWEENIVW---DNSPAASDNSIESHEIAG--ADVESALMRGIELDTGQNNFHER-- 441
L DWE W D+ P+A N+ H I G + + + L E G +F ER
Sbjct: 101 LSLSDWER--PWSSHDSDPSAQTNTASLHGILGTPSHLSNRLPSYSEPSIGATDFLERFP 158
Query: 442 -STSPNEKDCIVNMQNSPVLSETFGSKSSSDNTSHLFTESRYHPQLLRLESQLDLD 496
N + + + SPV SET G S SD+ S L + R P + L S + D
Sbjct: 159 GMARLNSQSFLDSHSISPVDSETSGFSSGSDHLSDLLSSLRISPSVPFLMSSMQRD 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,715,501
Number of Sequences: 539616
Number of extensions: 22579648
Number of successful extensions: 72784
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 430
Number of HSP's that attempted gapping in prelim test: 68255
Number of HSP's gapped (non-prelim): 3816
length of query: 1282
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1153
effective length of database: 121,958,995
effective search space: 140618721235
effective search space used: 140618721235
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)