Query 000793
Match_columns 1282
No_of_seqs 286 out of 1285
Neff 5.2
Searched_HMMs 46136
Date Mon Apr 1 23:36:54 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 1.5E-51 3.2E-56 502.3 25.3 295 12-379 79-397 (894)
2 PRK06464 phosphoenolpyruvate s 100.0 9.6E-49 2.1E-53 489.3 29.6 289 964-1281 3-333 (795)
3 PRK06241 phosphoenolpyruvate s 100.0 8.5E-48 1.8E-52 486.8 28.9 278 965-1281 2-311 (871)
4 TIGR01418 PEP_synth phosphoeno 100.0 1.4E-47 3.1E-52 479.0 28.5 287 967-1281 1-331 (782)
5 PF01326 PPDK_N: Pyruvate phos 100.0 1.4E-48 3.1E-53 446.3 1.4 269 977-1282 4-303 (327)
6 PRK05878 pyruvate phosphate di 100.0 1.8E-38 4E-43 380.1 19.7 246 963-1281 4-297 (530)
7 COG0574 PpsA Phosphoenolpyruva 100.0 4.9E-36 1.1E-40 374.3 17.4 278 967-1281 4-320 (740)
8 TIGR01828 pyru_phos_dikin pyru 100.0 2.8E-34 6E-39 360.4 20.1 242 966-1281 2-337 (856)
9 PRK09279 pyruvate phosphate di 100.0 4.3E-31 9.3E-36 330.7 22.3 242 965-1281 3-343 (879)
10 PRK05849 hypothetical protein; 99.9 7.1E-26 1.5E-30 281.4 18.2 193 976-1282 5-216 (783)
11 PLN02784 alpha-amylase 99.9 2.6E-25 5.7E-30 273.2 13.7 130 246-376 68-210 (894)
12 PLN02316 synthase/transferase 97.3 0.007 1.5E-07 79.6 18.2 90 23-126 143-239 (1036)
13 PRK05849 hypothetical protein; 96.6 0.023 5.1E-07 73.2 14.6 176 751-933 571-781 (783)
14 PLN02316 synthase/transferase 96.2 0.12 2.6E-06 68.5 17.8 88 31-126 326-420 (1036)
15 PRK08296 hypothetical protein; 95.8 0.013 2.8E-07 73.4 6.3 97 831-934 503-601 (603)
16 PF00391 PEP-utilizers: PEP-ut 95.6 0.012 2.7E-07 55.1 3.8 68 857-928 9-78 (80)
17 PRK06241 phosphoenolpyruvate s 95.3 0.026 5.7E-07 74.0 6.9 93 833-934 773-868 (871)
18 PF03423 CBM_25: Carbohydrate 95.1 0.11 2.4E-06 49.7 8.8 65 288-373 20-86 (87)
19 PRK05865 hypothetical protein; 93.4 0.15 3.3E-06 66.7 7.5 98 831-936 739-838 (854)
20 PRK06354 pyruvate kinase; Prov 93.1 0.11 2.3E-06 65.5 5.4 95 831-932 486-582 (590)
21 TIGR01418 PEP_synth phosphoeno 93.0 0.15 3.2E-06 66.4 6.5 94 829-929 356-451 (782)
22 PRK05878 pyruvate phosphate di 92.6 0.17 3.7E-06 63.0 6.0 99 828-933 351-452 (530)
23 PRK11377 dihydroxyacetone kina 92.5 0.18 3.9E-06 62.1 5.9 68 857-934 395-471 (473)
24 PRK06464 phosphoenolpyruvate s 92.4 0.14 3.1E-06 66.6 5.3 99 829-935 358-462 (795)
25 PRK09279 pyruvate phosphate di 91.8 0.16 3.4E-06 66.6 4.5 104 830-936 397-511 (879)
26 PF03423 CBM_25: Carbohydrate 91.8 0.46 9.9E-06 45.5 6.5 67 46-124 18-86 (87)
27 TIGR01828 pyru_phos_dikin pyru 90.4 0.29 6.2E-06 64.3 5.0 105 829-936 390-505 (856)
28 PRK11177 phosphoenolpyruvate-p 88.6 0.56 1.2E-05 59.2 5.5 78 857-938 153-233 (575)
29 TIGR01417 PTS_I_fam phosphoeno 87.8 0.73 1.6E-05 58.1 5.8 76 857-937 152-231 (565)
30 COG3848 Phosphohistidine swive 87.7 1.3 2.7E-05 44.0 5.9 99 830-935 5-105 (111)
31 COG1080 PtsA Phosphoenolpyruva 86.1 1.1 2.3E-05 55.9 5.7 71 857-937 154-233 (574)
32 PRK11061 fused phosphoenolpyru 85.4 1.1 2.4E-05 58.3 5.6 76 857-938 320-399 (748)
33 PRK03955 hypothetical protein; 79.2 8.5 0.00018 40.0 8.2 96 831-934 6-128 (131)
34 PF11154 DUF2934: Protein of u 68.1 6.4 0.00014 32.8 3.4 35 138-175 5-39 (40)
35 COG3605 PtsP Signal transducti 62.5 5 0.00011 50.2 2.5 79 853-936 323-405 (756)
36 COG0574 PpsA Phosphoenolpyruva 61.6 3.9 8.4E-05 53.4 1.5 126 791-925 305-432 (740)
37 PF02786 CPSase_L_D2: Carbamoy 37.2 59 0.0013 36.3 5.6 45 1232-1281 131-179 (211)
38 PF04190 DUF410: Protein of un 32.0 1.4E+02 0.0031 34.3 7.7 87 461-551 53-158 (260)
39 COG5424 Pyrroloquinoline quino 31.0 56 0.0012 37.2 4.1 24 549-573 92-116 (242)
40 KOG3021 Predicted kinase [Gene 26.6 51 0.0011 37.5 2.8 43 456-500 95-137 (313)
41 KOG2122 Beta-catenin-binding p 22.1 2.2E+03 0.048 31.4 16.3 122 690-820 393-522 (2195)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.5e-51 Score=502.29 Aligned_cols=295 Identities=24% Similarity=0.465 Sum_probs=246.0
Q ss_pred ceeeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCccccc
Q 000793 12 VHNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQT 77 (1282)
Q Consensus 12 ~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~a~~T 77 (1282)
...|.|.... ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++||||
T Consensus 79 kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT 156 (894)
T PLN02784 79 KETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIET 156 (894)
T ss_pred eeeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEec
Confidence 3467765554 2334443 67788999999866 7788999999999885 89999999 44 8999999
Q ss_pred ccccc--cc-cEEEEEEec-CCcceeEEEEEEeccccccccccCCcccccCCCCCCCCCCCCCchhhHh-hhhhhhhhcC
Q 000793 78 PFVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIE-LRAYQNWERR 152 (1282)
Q Consensus 78 pf~~~--g~-~~~v~ie~~-d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~~~~~~~~~~vpe~lv~-~~a~~~We~~ 152 (1282)
||+++ |+ .+.|+|||+ ++++.||+||||+|++|+|||++|+||+|+||+......+ +++ .+.+..|.+
T Consensus 157 ~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~------~~~~~~~~~~~~~- 229 (894)
T PLN02784 157 PLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGN------NVGAKKGFGIWPG- 229 (894)
T ss_pred cccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccc------eeehhhhcCcCcC-
Confidence 99996 44 788889999 9999999999999999999999999999999997665655 344 578888988
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHhhcCCChHHhhhhcccCCCCCCCCCccccccCCCCCCccccchHHHhhhccc--CC
Q 000793 153 GRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYK--GH 230 (1282)
Q Consensus 153 g~p~~~~~~~~~~~~~a~~~l~~~l~~G~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~ 230 (1282)
.|.+|+..+.++ +.++++.+++. +.+.. +....++ |++||+ |+
T Consensus 230 -----------------------------~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~~~-~~~~~~~~~~ 274 (894)
T PLN02784 230 -----------------------------ALGQLSNILLKD-EGSPSKEQDKS--SSELD--SAAERKG-LKGFYEEMPI 274 (894)
T ss_pred -----------------------------ccccccchhccC-CCCCcccCCCc--ccccc--ccccccc-chhhhhccce
Confidence 788888777776 66666655544 32322 2233444 888998 78
Q ss_pred CccCCCCchhHHHHHhhhcCCCcceeeeeeecceEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 000793 231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP 308 (1282)
Q Consensus 231 ~k~~~~p~~~~~~~~~~~~~~~~v~~~k~f~l~~ei~V~v~~~--~g~~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP~ 308 (1282)
.|+ +.++ +.+.|+|+++ ++|++|+|+||+|++|||||||||++++||++||+
T Consensus 275 ~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~ 328 (894)
T PLN02784 275 VKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE 328 (894)
T ss_pred eeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence 887 5565 8899999975 78999999999999999999999999999999999
Q ss_pred CCCCCccccccceeeeeeecccCCCcceeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCC
Q 000793 309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (1282)
Q Consensus 309 ~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~-~~~W~k~~G~DF~V~l~~~~~~ 379 (1282)
+++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 999999999999999999999988889998777 7899999999999 6999999999999999976543
No 2
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=9.6e-49 Score=489.26 Aligned_cols=289 Identities=24% Similarity=0.391 Sum_probs=242.5
Q ss_pred cCceeeeCCCCC---CCccchhhHHHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 000793 964 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 1039 (1282)
Q Consensus 964 ~~~~vl~l~e~~---~~~VGgKAAnLg~L~~~lp-~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~ 1039 (1282)
+.++++++.++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+++.++.+++.
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 456889988775 4789999999999998665 58999999999999999999998 7888888887777777765
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHH--------------HhcC-------CCCCCCc-------cHHHHHHHHHH
Q 000793 1040 KL----QEIQEAVLQMSAPLSLIYELKNKM--------------RSSG-------MPWPGDE-------GWNLAWRSIKK 1087 (1282)
Q Consensus 1040 ~L----~~IR~~I~~~~lP~eL~~eL~~a~--------------RSSg-------~sfAG~~-------g~e~l~~AIK~ 1087 (1282)
.+ ++||++|++.++|+++.++|..++ |||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 44 899999999999999999998775 3553 4789988 37999999999
Q ss_pred HHhcCCChHHHHHHHHcCCCCCCcceEEEEEeeecCc--eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceE
Q 000793 1088 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 1165 (1282)
Q Consensus 1088 VWASlyn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f 1165 (1282)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.+.++||++|||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999986 89999
Q ss_pred EEecCCCC--CCcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHH
Q 000793 1166 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 1243 (1282)
Q Consensus 1166 ~v~K~~~~--~~~vl~~~sK~ig~~~~~~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~l 1243 (1282)
.++|.+.. .+.+ .++.++.+ ...+++.. .| +.|+ ..+++++.. ++.|+|+|++
T Consensus 239 ~v~~~~~~~~~~~i---~~~~i~~K-~~~~~~~~--~~-------~~~~-~~~~~~~~~------~~~~~L~~~~----- 293 (795)
T PRK06464 239 YVHKPTLKAGKPAI---VRRTLGSK-KIKMVYDD--GG-------EHGV-KTVDVPEEE------RNRFSLTDEE----- 293 (795)
T ss_pred EEecccccccccce---eeeecccc-ceeeeecc--CC-------CCce-eEEeCCHHH------hhccCCCHHH-----
Confidence 99987532 0112 25556654 22233221 11 2232 355655432 4689999998
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 000793 1244 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 1281 (1282)
Q Consensus 1244 l~rLa~lg~~IE~~fG~PQDIEWai~~--g~LyILQsRPq 1281 (1282)
+++|++++.+||++||+|||||||+++ |+|||||+||+
T Consensus 294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi 333 (795)
T PRK06464 294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE 333 (795)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence 899999999999999999999999987 99999999997
No 3
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=8.5e-48 Score=486.80 Aligned_cols=278 Identities=23% Similarity=0.421 Sum_probs=231.5
Q ss_pred CceeeeCCCCC---CCccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHH-
Q 000793 965 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSK- 1040 (1282)
Q Consensus 965 ~~~vl~l~e~~---~~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~- 1040 (1282)
.++++++.++. ...|||||+||++|.+ .||+||+|||||+++|++||+.+ ++.+.|...++.++..+...
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 45788888764 4689999999999999 69999999999999999999987 44444444444455445433
Q ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHH-----------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcC
Q 000793 1041 ---LQEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 1092 (1282)
Q Consensus 1041 ---L~~IR~~I~~~~lP~eL~~eL~~a~-----------RSSg-------~sfAG~~-------g~e~l~~AIK~VWASl 1092 (1282)
.++||++|++.++|+++.++|.+++ |||+ .||||++ +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 3899999999999999999999875 5654 4789988 4899999999999999
Q ss_pred CChHHHHHHHHcCCCCCCcceEEEEEeeecCceeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEecCCC
Q 000793 1093 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNL 1172 (1282)
Q Consensus 1093 yn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~v~K~~~ 1172 (1282)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|+++ ++
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~--~~ 232 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVR--EG 232 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEe--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 89999998 22
Q ss_pred CCCcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHH
Q 000793 1173 KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGK 1252 (1282)
Q Consensus 1173 ~~~~vl~~~sK~ig~~~~~~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~ll~rLa~lg~ 1252 (1282)
.+ .++.++.|. .. ++... ++|+ ..++++.. ..+.|+|+|++ +.+|+++|.
T Consensus 233 ---~i---~~~~i~~k~-~~-~~~~~----------~gg~-~~~~~~~~------~~~~~~L~~~~-----~~~L~~l~~ 282 (871)
T PRK06241 233 ---KI---IDKTIATKK-LA-IYALK----------EGGT-ETKEIEPE------QQKSQTLTDEQ-----ILELARLGR 282 (871)
T ss_pred ---ce---EEEeccccc-eE-EEecC----------CCce-EEEECCHH------HhcCCCCCHHH-----HHHHHHHHH
Confidence 23 255566541 12 22221 2343 34444432 24579999988 899999999
Q ss_pred HHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000793 1253 IIESLYGYPQDIEGVLKDGLIYVVQARPQ 1281 (1282)
Q Consensus 1253 ~IE~~fG~PQDIEWai~~g~LyILQsRPq 1281 (1282)
.||++||+|||||||+++|+|||||+||+
T Consensus 283 ~ie~~~g~pqDIEw~~~~~~l~ilQaRPi 311 (871)
T PRK06241 283 KIEAHFGCPQDIEWCLADGTFYILQSRPI 311 (871)
T ss_pred HHHHHcCCCcceEEEEECCEEEEEEcCCc
Confidence 99999999999999999999999999997
No 4
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=1.4e-47 Score=479.02 Aligned_cols=287 Identities=27% Similarity=0.418 Sum_probs=236.5
Q ss_pred eeeeCCCCC---CCccchhhHHHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH-
Q 000793 967 YAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1041 (1282)
Q Consensus 967 ~vl~l~e~~---~~~VGgKAAnLg~L~~~lp-~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L- 1041 (1282)
++++|.++. ...|||||+||++|++.++ .|++||+|||||+++|++||+++ ++.+.|..+++.++.++++.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467777764 4689999999999997322 48999999999999999999988 788888777776766666543
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHH----------------HhcC-------CCCCCCc-------cHHHHHHHHHHH
Q 000793 1042 ---QEIQEAVLQMSAPLSLIYELKNKM----------------RSSG-------MPWPGDE-------GWNLAWRSIKKV 1088 (1282)
Q Consensus 1042 ---~~IR~~I~~~~lP~eL~~eL~~a~----------------RSSg-------~sfAG~~-------g~e~l~~AIK~V 1088 (1282)
++||++|++.++|+++.++|..++ |||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 799999999999999999988664 4553 4789987 379999999999
Q ss_pred HhcCCChHHHHHHHHcCCCCCCcceEEEEEeeecCc--eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEE
Q 000793 1089 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 1166 (1282)
Q Consensus 1089 WASlyn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~ 1166 (1282)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||+||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 999999
Q ss_pred EecCCCCC--CcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHH
Q 000793 1167 TKKNNLKS--PIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVF 1244 (1282)
Q Consensus 1167 v~K~~~~~--~~vl~~~sK~ig~~~~~~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~ll 1244 (1282)
++|.+... ..+ .++.++.+ ...+++..+ | +.+.....++++.. +.+|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i---~~~~~~~k-~~~~~~~~~--g-------~~~~~~~~~~~~~~------~~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAI---LERTLGSK-KIKMVYDPD--G-------GNVETKIVEVPEEE------RDAFSLSDEE-----I 292 (782)
T ss_pred Eecccccccccce---eeeecccc-ceEEEEccC--C-------CCcceEEEeCCHHH------hhccCCCHHH-----H
Confidence 99875320 012 24555554 223333211 1 11123455555432 4679999998 8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEE--CCeEEEEeeccC
Q 000793 1245 SKIAETGKIIESLYGYPQDIEGVLK--DGLIYVVQARPQ 1281 (1282)
Q Consensus 1245 ~rLa~lg~~IE~~fG~PQDIEWai~--~g~LyILQsRPq 1281 (1282)
.+|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 9999999999999999999999999 899999999997
No 5
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=1.4e-48 Score=446.31 Aligned_cols=269 Identities=30% Similarity=0.517 Sum_probs=197.0
Q ss_pred CccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCCh----HHHHHHHHHHHcCC
Q 000793 977 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL----SKLQEIQEAVLQMS 1052 (1282)
Q Consensus 977 ~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~----~~L~~IR~~I~~~~ 1052 (1282)
..|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+.+.+...+. +.+++||++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 458999999999997 69999999999999999999887 788888887664432222 34689999999999
Q ss_pred CCHHHHHHHHHHH------------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 000793 1053 APLSLIYELKNKM------------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 1106 (1282)
Q Consensus 1053 lP~eL~~eL~~a~------------RSSg-------~sfAG~~-------g~e~l~~AIK~VWASlyn~RAv~yRr~~Gi 1106 (1282)
+|+++.++|..++ |||+ .+|||+| +.++|++|||+||||+|++||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 9999999999875 4443 3678877 369999999999999999999999999999
Q ss_pred CCCCcceEEEEEeeecCceeEEEEecCCCCCCCcc-eeeecccccccccccccCCCCceEEEecCCCCCCcccccccccc
Q 000793 1107 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1185 (1282)
Q Consensus 1107 ~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~e-i~IEav~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~i 1185 (1282)
+++++.|||+||+||++++|||+||+||.+|+++. ++||+++||||+||+|.. +|++|++++.++ .+ ..+.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~---~~---~~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDP---RI---REREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHH---HH---HEEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCc---ch---hhhhc
Confidence 99999999999999999999999999999999998 999999999999999987 999999987543 12 12333
Q ss_pred cccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 000793 1186 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1265 (1282)
Q Consensus 1186 g~~~~~~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~ll~rLa~lg~~IE~~fG~PQDIE 1265 (1282)
+.+ +..++ .. .++|+ ..++++. ++...++|++++ +.+|++++..||++||+|||||
T Consensus 231 ~~k-~~~~~--~~---------~~~~~-~~~~~~~------~~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQK-SVQLV--PD---------EGGGL-EEVDVPE------ERQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp ----HCCCC--CC---------CTTTE-ECCCHHH------HCHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CCc-eEEEE--Ec---------CCCce-EEEeCch------hhhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 332 11111 11 23453 3333332 235678888877 8999999999999999999999
Q ss_pred EEEECCeEEEEeeccCC
Q 000793 1266 GVLKDGLIYVVQARPQM 1282 (1282)
Q Consensus 1266 Wai~~g~LyILQsRPqv 1282 (1282)
||+++|+|||||+||+.
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999984
No 6
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=1.8e-38 Score=380.11 Aligned_cols=246 Identities=18% Similarity=0.280 Sum_probs=195.6
Q ss_pred ccCceeeeCCCCCC---CccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhCC--
Q 000793 963 FRGKYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFING-- 1035 (1282)
Q Consensus 963 ~~~~~vl~l~e~~~---~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~--n~~L~~~I~~l~a~l~~-- 1035 (1282)
...++++++.+... +++|||++||++|++ .++|||+|||||+.+|++|++.+. ..+|++.|....+.++.
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999998754 689999999999998 689999999999999999998862 23466666655443321
Q ss_pred ----C---ChH----------HHHHHHHHHHcCCCCHHHHHHHHHHHHh------cCCCCCCCc-------------cHH
Q 000793 1036 ----G---DLS----------KLQEIQEAVLQMSAPLSLIYELKNKMRS------SGMPWPGDE-------------GWN 1079 (1282)
Q Consensus 1036 ----~---d~~----------~L~~IR~~I~~~~lP~eL~~eL~~a~RS------Sg~sfAG~~-------------g~e 1079 (1282)
+ ++. .+.-+++.|+++.+|++++++|.+..-. +..+|+|+| .++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 1 211 1234999999999999999999764211 112455555 158
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceEEEEEeeecCc-----eeEEEEecCCCCCCCcceeeeccccccccc
Q 000793 1080 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 1154 (1282)
Q Consensus 1080 ~l~~AIK~VWASlyn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~ei~IEav~GLGEtL 1154 (1282)
++..|||.||||+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|++..+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999998754 8999999999664 579999999999998888888899999999
Q ss_pred ccccCCCCceEEEecCCCCCCcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCC
Q 000793 1155 VGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMV 1234 (1282)
Q Consensus 1155 VsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~ig~~~~~~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plL 1234 (1282)
|+|.+ +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99975 5554322110 001
Q ss_pred CccccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000793 1235 GDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1281 (1282)
Q Consensus 1235 tD~e~r~~ll~rLa~lg~~IE~~fG~PQDIEWai~~g~LyILQsRPq 1281 (1282)
..+.+|++++..||++||.||||||++++|+|||||+||.
T Consensus 258 -------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 -------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred -------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1267999999999999999999999999999999999995
No 7
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-36 Score=374.27 Aligned_cols=278 Identities=26% Similarity=0.429 Sum_probs=222.7
Q ss_pred eeeeCCCC---CCCccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH--
Q 000793 967 YAVSVEDF---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 1041 (1282)
Q Consensus 967 ~vl~l~e~---~~~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L-- 1041 (1282)
++.++.+. +..++|||++||++|.+ .|++||+|||||+.+|+.|++.+ ++.+.+...+..++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 34555553 35899999999999999 69999999999999999999988 777777776665544444333
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHh---------------cC-------CCCCCCc-------cHHHHHHHHHHHHh
Q 000793 1042 --QEIQEAVLQMSAPLSLIYELKNKMRS---------------SG-------MPWPGDE-------GWNLAWRSIKKVWA 1090 (1282)
Q Consensus 1042 --~~IR~~I~~~~lP~eL~~eL~~a~RS---------------Sg-------~sfAG~~-------g~e~l~~AIK~VWA 1090 (1282)
..++..|+..++|+++.+++.+++.. |+ .+|+|+. +.++++.||++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 78999999999999999999988733 32 2688855 48999999999999
Q ss_pred cCCChHHHHHHHHcCCCCCCcceEEEEEeeecCc--eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEe
Q 000793 1091 SKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 1168 (1282)
Q Consensus 1091 Slyn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~v~ 1168 (1282)
|+||+||+.||..+|+++..+.|||+||+||.++ .|||+||+||.||....+.+++.+||||.+|+|.+ +|+.|.+.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999998 99999999
Q ss_pred cCCCCCCcccccccccccccCCceEEeecCCCCcccccccCCCee-eeeecCCccccccccCCCCCCCccccchHHHHHH
Q 000793 1169 KNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLY-DSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 1247 (1282)
Q Consensus 1169 K~~~~~~~vl~~~sK~ig~~~~~~~i~rsdsngedLe~~agaGl~-~svp~~~~~~~~vdys~~plLtD~e~r~~ll~rL 1247 (1282)
|.+. ..+ .++++.. .+++..+. +.+.+ +..+++.. ......++|.. +.+|
T Consensus 237 k~~~-~~~--~~~~~~~------~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKLI------KLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHHH------HHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHH
Confidence 8653 000 1122211 22221110 11111 11222211 23467788877 8999
Q ss_pred HHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000793 1248 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1281 (1282)
Q Consensus 1248 a~lg~~IE~~fG~PQDIEWai~~g~LyILQsRPq 1281 (1282)
++++..||.+||.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999998 8999999996
No 8
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=2.8e-34 Score=360.41 Aligned_cols=242 Identities=19% Similarity=0.283 Sum_probs=188.9
Q ss_pred ceeeeCCCCCC---CccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC------
Q 000793 966 KYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN------ 1034 (1282)
Q Consensus 966 ~~vl~l~e~~~---~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~--n~~L~~~I~~l~a~l~------ 1034 (1282)
++++++++.+. .++|||++||++|++ .|+|||+|||||+.+|+.|++++. ..++++.|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 47888888754 589999999999998 589999999999999999999873 2347666665544443
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCCHHHHHHHHH-------HH---H--------------hc---------
Q 000793 1035 ---GGDLS----------KLQEIQEAVLQMSAPLSLIYELKN-------KM---R--------------SS--------- 1068 (1282)
Q Consensus 1035 ---~~d~~----------~L~~IR~~I~~~~lP~eL~~eL~~-------a~---R--------------SS--------- 1068 (1282)
.+++. .+..+++.|+++.+|++++++|.+ ++ | ++
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 11221 124899999999999999999986 32 2 11
Q ss_pred ----C------CC----------CCCCc-----------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceEEEE
Q 000793 1069 ----G------MP----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 1117 (1282)
Q Consensus 1069 ----g------~s----------fAG~~-----------g~e~l~~AIK~VWASlyn~RAv~yRr~~Gi~~~~v~MAVLV 1117 (1282)
| .+ |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 1 11 33333 278999999999999999999999999999986 8999999
Q ss_pred EeeecCc-----eeEEEEecCCCCCCCcceeeecc-cccccccccccCCCCceEEEecCCCCCCcccccccccccccCCc
Q 000793 1118 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKP 1191 (1282)
Q Consensus 1118 QemV~ad-----~SGVlfT~nP~tgd~~ei~IEav-~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~ig~~~~~ 1191 (1282)
|+||.++ .|||+||+||.+|.+. ++++.. .|+||.||+|.+ +|+.|...
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~----------------------- 292 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAM----------------------- 292 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHh-----------------------
Confidence 9999665 6999999999999764 445543 479999999875 44322100
Q ss_pred eEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECC
Q 000793 1192 SIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDG 1271 (1282)
Q Consensus 1192 ~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~ll~rLa~lg~~IE~~fG~PQDIEWai~~g 1271 (1282)
. -+.++. +.+|++++..||++||.||||||++++|
T Consensus 293 ------------------------------~----------~~~p~~-----~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 293 ------------------------------E----------ADMPDV-----YKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred ------------------------------h----------hcChHH-----HHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 0 011122 7899999999999999999999999999
Q ss_pred eEEEEeeccC
Q 000793 1272 LIYVVQARPQ 1281 (1282)
Q Consensus 1272 ~LyILQsRPq 1281 (1282)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 9
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.97 E-value=4.3e-31 Score=330.73 Aligned_cols=242 Identities=24% Similarity=0.372 Sum_probs=180.1
Q ss_pred CceeeeCCC----C---CCCccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHH----HHh
Q 000793 965 GKYAVSVED----F---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISR----LYK 1031 (1282)
Q Consensus 965 ~~~vl~l~e----~---~~~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~--n~~L~~~I~~----l~a 1031 (1282)
.++++++.+ . ..+++|||++||++|.+ .|+|||+||+||+.+|++|++... .+++++.+.. |..
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 357777733 2 23799999999999998 699999999999999999998762 3455554443 333
Q ss_pred hhC--CCChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HHh----c--------------
Q 000793 1032 FIN--GGDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MRS----S-------------- 1068 (1282)
Q Consensus 1032 ~l~--~~d~~-------------~L~~IR~~I~~~~lP~eL~~eL~~a----------~RS----S-------------- 1068 (1282)
... .++.+ ...-+.+.|+++-+.++.++.|.+. ||. .
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 222 12211 1245667777777777777766642 111 1
Q ss_pred -------------------------------------CCCCCCCccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCc
Q 000793 1069 -------------------------------------GMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNL 1111 (1282)
Q Consensus 1069 -------------------------------------g~sfAG~~g~e~l~~AIK~VWASlyn~RAv~yRr~~Gi~~~~v 1111 (1282)
|.+|| ++.+++|..||+.||+|+||+||+.||+.+|++++ .
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp-~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~ 237 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFP-QDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-W 237 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-c
Confidence 11122 11388999999999999999999999999999986 8
Q ss_pred ceEEEEEeeecCc-----eeEEEEecCCCCCCCcceeeec-ccccccccccccCCCCceEEEecCCCCCCcccccccccc
Q 000793 1112 CMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEI-VKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1185 (1282)
Q Consensus 1112 ~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~ei~IEa-v~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~i 1185 (1282)
.|||+||+||.++ .|||+||+||.||++. ++++. +.|+||.||+|.+ +|+.|. .
T Consensus 238 g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~-~~Ge~l~~aqGedVVsG~~-tp~~~~---------------~--- 297 (879)
T PRK09279 238 GTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKK-LYGEFLINAQGEDVVAGIR-TPQPIP---------------S--- 297 (879)
T ss_pred CceEEEEeccccCCCCCcceEEEEeCCCCCCCCc-eeEEEecCCCChhhhcCcc-CcchhH---------------H---
Confidence 9999999999766 5999999999999864 45555 6799999999875 554320 0
Q ss_pred cccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 000793 1186 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1265 (1282)
Q Consensus 1186 g~~~~~~~i~rsdsngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~ll~rLa~lg~~IE~~fG~PQDIE 1265 (1282)
++ . ..++. +++|++++..||++||.|||||
T Consensus 298 ------------------l~--------------------------~-~~p~~-----~~~L~~~~~~LE~~f~~pqDIE 327 (879)
T PRK09279 298 ------------------LE--------------------------E-AMPEV-----YAELVDIAKKLEKHYRDMQDIE 327 (879)
T ss_pred ------------------Hh--------------------------h-cChHH-----HHHHHHHHHHHHHHhCCCeeeE
Confidence 00 0 01122 7899999999999999999999
Q ss_pred EEEECCeEEEEeeccC
Q 000793 1266 GVLKDGLIYVVQARPQ 1281 (1282)
Q Consensus 1266 Wai~~g~LyILQsRPq 1281 (1282)
|++++|+|||||+||.
T Consensus 328 ftie~g~L~iLQtRp~ 343 (879)
T PRK09279 328 FTIERGKLYMLQTRNG 343 (879)
T ss_pred EEEECCEEEEEEeCCc
Confidence 9999999999999995
No 10
>PRK05849 hypothetical protein; Provisional
Probab=99.93 E-value=7.1e-26 Score=281.39 Aligned_cols=193 Identities=20% Similarity=0.176 Sum_probs=142.6
Q ss_pred CCccchhhHHHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHHHHHHHHHHcCCCCH
Q 000793 976 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPL 1055 (1282)
Q Consensus 976 ~~~VGgKAAnLg~L~~~lp~g~~VP~GfvIPfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L~~IR~~I~~~~lP~ 1055 (1282)
.-.+|+||++|+.|++++ .+++||+++++|...+.+ .. ...+ +.|+..+ +.
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~~-----~~~~---------------~~i~~~~-----~~ 55 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---NK-----DKVL---------------EEIQNSF-----PA 55 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---CH-----HHHH---------------HHHHHhc-----CC
Confidence 346899999999999976 589999999999875432 11 1111 1222211 00
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCcc---------HHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCcceEEEEEe
Q 000793 1056 SLIYELKNKMRSSG-------MPWPGDEG---------WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQE 1119 (1282)
Q Consensus 1056 eL~~eL~~a~RSSg-------~sfAG~~g---------~e~l~~AIK~VWASlyn~RAv~yRr~~Gi~~~~v~MAVLVQe 1119 (1282)
-.-++|||+ .||||+|. .+++..||++||||+++ ++ .|||+||+
T Consensus 56 -----~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 56 -----DKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred -----CeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 023568875 47999981 55999999999999766 22 38999999
Q ss_pred eec-CceeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEecCCCCCCcccccccccccccCCceEEeecC
Q 000793 1120 TIC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSD 1198 (1282)
Q Consensus 1120 mV~-ad~SGVlfT~nP~tgd~~ei~IEav~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sK~ig~~~~~~~i~rsd 1198 (1282)
||. +..|||+||+||.+|++..+....++|+||.||+|.. +|..+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998665544445899999999975 55443332100
Q ss_pred CCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCC-CeeEEEEE-ECCeEEEE
Q 000793 1199 SNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY-PQDIEGVL-KDGLIYVV 1276 (1282)
Q Consensus 1199 sngedLe~~agaGl~~svp~~~~~~~~vdys~~plLtD~e~r~~ll~rLa~lg~~IE~~fG~-PQDIEWai-~~g~LyIL 1276 (1282)
.++++++. +++|+++++.||++||+ |||||||+ .+|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01234444 78999999999999986 99999999 58999999
Q ss_pred eeccCC
Q 000793 1277 QARPQM 1282 (1282)
Q Consensus 1277 QsRPqv 1282 (1282)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999973
No 11
>PLN02784 alpha-amylase
Probab=99.92 E-value=2.6e-25 Score=273.23 Aligned_cols=130 Identities=25% Similarity=0.481 Sum_probs=117.9
Q ss_pred hhhcCCCcceeeeeeecc-eE-----EEEEE-EeeCCceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCccc
Q 000793 246 ENSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSK 316 (1282)
Q Consensus 246 ~~~~~~~~v~~~k~f~l~-~e-----i~V~v-~~~~g~~~V~v~td~~~~lvLHWGv~~~~--~~eW~~PP~~~~P~~S~ 316 (1282)
.+..+.++|+++|+|+|+ .| |.|++ ++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+
T Consensus 68 ~~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~ 147 (894)
T PLN02784 68 VETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSI 147 (894)
T ss_pred eeccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcE
Confidence 356668999999999999 66 45555 78899999999999999999999999987 69999999999999999
Q ss_pred cc-cceeeeeeecccCCCcceeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 000793 317 MV-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (1282)
Q Consensus 317 ~~-~~A~eT~f~~~~~~~~~~~~-lei~l~~~~~~gi~FVLk~--~~~W~k~~G~DF~V~l~~~ 376 (1282)
.+ ++||||||++.+.+..++++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 148 ~~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 148 AIKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred EecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 98 89999999998888888886 899885 899999999999 5999999999999999963
No 12
>PLN02316 synthase/transferase
Probab=97.25 E-value=0.007 Score=79.56 Aligned_cols=90 Identities=13% Similarity=0.300 Sum_probs=57.2
Q ss_pred EEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---cccEEEEEEecCC
Q 000793 23 LQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIELRDP 95 (1282)
Q Consensus 23 ~~~~~~~~~~g~~~~v~~~~~~~----~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~---g~~~~v~ie~~d~ 95 (1282)
+-|.=.-...|+.++|-+-..+. ..++++|=|+ ..|...+ .-++++|+ ||.-..++.+++.
T Consensus 143 ~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~Vp~~ 210 (1036)
T PLN02316 143 LFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHIPKE 210 (1036)
T ss_pred EEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEecCcc
Confidence 33333334556666666554442 3456666443 4565532 22333343 7777777777666
Q ss_pred cceeEEEEEEeccccccccccCCcccccCCC
Q 000793 96 KIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (1282)
Q Consensus 96 ~i~ai~Fvl~de~~~~W~k~~g~nf~v~l~~ 126 (1282)
+. .|+|||.|+ .+.|=+|+|.||+++++.
T Consensus 211 A~-~ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 211 AY-KMDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred ce-EEEEEEeCC-ccccccCCCCceEEEeCC
Confidence 55 499999998 678999999999999863
No 13
>PRK05849 hypothetical protein; Provisional
Probab=96.60 E-value=0.023 Score=73.18 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHH----HHhhCchHHHhhhhcCccchhcccccHHHHhhhhhHH----HHHHHHhhHHH
Q 000793 751 ALQAKAILDRLQLVLA--ERSQTY----QKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPV 820 (1282)
Q Consensus 751 AL~~kA~ldR~rr~~~--~~~d~~----~~~~q~~a~~lG~~lgie~~~v~~FtEe~IRas~~f~----lS~ll~~L~p~ 820 (1282)
...++..++++|..++ +++-.. ....-.....+|..||+++.-+--++-+.|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888877 333222 2223333446788889877777666666666422110 01222111111
Q ss_pred HHHH----h---------c----------CCCcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccc-c-CC
Q 000793 821 LRKV----A---------N----------LGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEE-I-PV 875 (1282)
Q Consensus 821 lr~~----a---------~----------~~~wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EE-I-P~ 875 (1282)
.++. . + ...=..++||.+.|.++++..-. . ....-.|||+..+|=.=+ + ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1110 0 0 00012379999999999987532 1 112356999987642111 1 12
Q ss_pred CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 000793 876 GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 933 (1282)
Q Consensus 876 ~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~vs~~~v~ 933 (1282)
+++||||..-+ ..||.+++||..|||-+.--.......+ .+|+.|.+....+.|.
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRIE 781 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEEE
Confidence 69999998776 8999999999999999654321112222 3688888877665443
No 14
>PLN02316 synthase/transferase
Probab=96.19 E-value=0.12 Score=68.49 Aligned_cols=88 Identities=14% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCcccccccccccccEEEEEEecCCcceeEEEEEEe
Q 000793 31 SIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKD 106 (1282)
Q Consensus 31 ~~g~~~~v~~~~~~----~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~g~~~~v~ie~~d~~i~ai~Fvl~d 106 (1282)
..|.+++|-.--.| .+.++.+|||.. .|.-..+.+ ..-+.++ .+.|+.-..+|.++.. .+-+.||+.|
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~~-A~~mDfVFsd 397 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPER-ALVLDWVFAD 397 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCCC-ceEEEEEEec
Confidence 34555554443333 377899999995 454433311 0112222 1137767776666644 5779999999
Q ss_pred c---cccccccccCCcccccCCC
Q 000793 107 G---IHDRWLRLNHGNFRIEIPE 126 (1282)
Q Consensus 107 e---~~~~W~k~~g~nf~v~l~~ 126 (1282)
+ ..+.|=+++|.|||++.+.
T Consensus 398 g~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 398 GPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred CCcccccccccCCCcceeeecCC
Confidence 7 3568999999999999875
No 15
>PRK08296 hypothetical protein; Provisional
Probab=95.80 E-value=0.013 Score=73.44 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000793 831 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 908 (1282)
Q Consensus 831 qvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D 908 (1282)
..++||.+.|.+++|....+.. ....+.|||+..++- +.+| ..+.||||..-. .+||.++.||+.|||-+..-.
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP-~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~ 578 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSP-SWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTG 578 (603)
T ss_pred eecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCH-HHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCc
Confidence 4469999999999998765532 234678999986542 2244 269999998765 899999999999999876654
Q ss_pred hHHHHHHHhcCCCeEEEEEcCCceEE
Q 000793 909 QNILRNLRLKEGKAVSIRLKSTNLII 934 (1282)
Q Consensus 909 ~~~~~~l~~l~Gk~V~l~vs~~~v~l 934 (1282)
. ... +-.+|..|.+..+.+.|.+
T Consensus 579 ~-at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 579 N-ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred c-Hhh--hcCCCCEEEEECCCCEEEE
Confidence 2 211 2247999998887765554
No 16
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.58 E-value=0.012 Score=55.07 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCeEEEEeCCCCcccc-C-CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEEc
Q 000793 857 RRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 928 (1282)
Q Consensus 857 ~~p~Ill~~~~~G~EEI-P-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~vs 928 (1282)
..++||+++..+-.+-. . .+++||||.+-. ++||.++.||.+|||.+..-.. ... .-.+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~--~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATE--AIKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHH--HSCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhh--ccCCCCEEEEECC
Confidence 46789999976555433 1 379999998775 8999999999999999776652 222 2236888887543
No 17
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.33 E-value=0.026 Score=74.04 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=69.0
Q ss_pred eeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEecchH
Q 000793 833 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 910 (1282)
Q Consensus 833 lspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~ 910 (1282)
+++|.+.|.++++....+. ......|||+..+++. ..| ..+.||||..-+ .+||.+|.||..|||-++.-. +
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~-~ 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDPG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVE-N 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCHH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEccc-c
Confidence 6899999999998775543 2345679999987763 344 279999887665 999999999999999876443 2
Q ss_pred HHHHHHh-cCCCeEEEEEcCCceEE
Q 000793 911 ILRNLRL-KEGKAVSIRLKSTNLII 934 (1282)
Q Consensus 911 ~~~~l~~-l~Gk~V~l~vs~~~v~l 934 (1282)
. .+. .+|..|.+......|.+
T Consensus 847 ~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H---HhhcCCCCEEEEECCCCEEEE
Confidence 2 233 37999998877655544
No 18
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.14 E-value=0.11 Score=49.71 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=37.6
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCcceeEEEEEccCCceeEEEEEEecC-CcccccC
Q 000793 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1282)
Q Consensus 288 ~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~-~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~k~~ 365 (1282)
.+.||+|... |..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n~-----W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFNR-----WTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCCC-----CCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 4789999754 987764 22222111 11223345677766655 799999998 8999999
Q ss_pred CcceEEec
Q 000793 366 GENFFVGL 373 (1282)
Q Consensus 366 G~DF~V~l 373 (1282)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 19
>PRK05865 hypothetical protein; Provisional
Probab=93.45 E-value=0.15 Score=66.66 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=69.1
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000793 831 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 908 (1282)
Q Consensus 831 qvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D 908 (1282)
..++||.+.|.+++|.. .+ ......+.|||+...+-. .+| ..+.||||..-. .+||.++.||..|||-+.+-.
T Consensus 739 ~~~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp~-~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~ 813 (854)
T PRK05865 739 VGVCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDVG-YTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQ 813 (854)
T ss_pred eeccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCHH-HHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEccc
Confidence 34699999999999972 22 123456789999864311 133 269999998665 899999999999999987654
Q ss_pred hHHHHHHHhcCCCeEEEEEcCCceEEee
Q 000793 909 QNILRNLRLKEGKAVSIRLKSTNLIISD 936 (1282)
Q Consensus 909 ~~~~~~l~~l~Gk~V~l~vs~~~v~l~~ 936 (1282)
. +.. .-.+|..|.+..+...|.+-+
T Consensus 814 ~-at~--~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 814 G-ATR--FLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred c-Hhh--cCCCCCEEEEECCCcEEEEec
Confidence 2 222 123899999988876666543
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=93.15 E-value=0.11 Score=65.48 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=69.0
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000793 831 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 908 (1282)
Q Consensus 831 qvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D 908 (1282)
+..+||.+.|.++++....+. .....+.||+++..+- +.+|. .+.||||..-. ..||.++.||.+|||-+..-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 456899999999998875542 2345688999986554 44552 79999998665 899999999999999977654
Q ss_pred hHHHHHHHhcCCCeEEEEEcCCce
Q 000793 909 QNILRNLRLKEGKAVSIRLKSTNL 932 (1282)
Q Consensus 909 ~~~~~~l~~l~Gk~V~l~vs~~~v 932 (1282)
.. .. .-.+|..|.+......|
T Consensus 562 ~~-~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 562 NA-TS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred ch-hh--ccCCCCEEEEECCCCEE
Confidence 22 22 22468988887765433
No 21
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.02 E-value=0.15 Score=66.42 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=68.5
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEe
Q 000793 829 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 906 (1282)
Q Consensus 829 ~wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 906 (1282)
.=..++||.+.|.++++....+.. ....+.|||+...+- +++|. .+.||||..-. ..||.++.||+.|||-+..
T Consensus 356 ~G~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg 431 (782)
T TIGR01418 356 TGRAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVG 431 (782)
T ss_pred cCcccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEc
Confidence 345579999999999998876643 344577999985433 22442 79999998766 8999999999999998654
Q ss_pred cchHHHHHHHhcCCCeEEEEEcC
Q 000793 907 FDQNILRNLRLKEGKAVSIRLKS 929 (1282)
Q Consensus 907 ~D~~~~~~l~~l~Gk~V~l~vs~ 929 (1282)
-. +....+ .+|..|.+....
T Consensus 432 ~~-~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 432 TG-DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred cc-chhhcc--cCCCEEEEEcCC
Confidence 33 222222 369999988876
No 22
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=92.63 E-value=0.17 Score=62.98 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=65.4
Q ss_pred CCcEEeeeeeEEEEEEE-ecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeE
Q 000793 828 GCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFA 904 (1282)
Q Consensus 828 ~~wqvlspG~A~G~L~~-V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~a 904 (1282)
..=..++||.+.|+++. .++..+. .....+.|||+...+ -++++. .+.||||..-. ..||.++.||++|||-+
T Consensus 351 ~~G~~as~G~a~G~V~~~~~~~~~~--~~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~V 426 (530)
T PRK05878 351 AKGLPACPGVVSGTAYTDVDEALDA--ADRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAV 426 (530)
T ss_pred ccCeeccCceEEEEEEECHHHHHHH--hhccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEE
Confidence 44566899999999864 2222111 122346788887542 223442 69999998776 89999999999999998
Q ss_pred EecchHHHHHHHhcCCCeEEEEEcCCceE
Q 000793 905 TCFDQNILRNLRLKEGKAVSIRLKSTNLI 933 (1282)
Q Consensus 905 t~~D~~~~~~l~~l~Gk~V~l~vs~~~v~ 933 (1282)
..-... ...+ .+|..|.+......|.
T Consensus 427 vG~~~~-~~~~--~~G~~VtvDg~~G~V~ 452 (530)
T PRK05878 427 VGCGAG-VAAA--LAGKEITVDGYEGEVR 452 (530)
T ss_pred Ecccch-hhcc--CCCCEEEEECCCCEEE
Confidence 754322 2223 4699998877654443
No 23
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.48 E-value=0.18 Score=62.06 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEE
Q 000793 857 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 927 (1282)
Q Consensus 857 ~~p~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~v 927 (1282)
+.|.|||++ |+.| +|.||+|..-. ..||.+++||.+|||-+.=-. +.+. .-.+|..|-+..
T Consensus 395 ~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~-~~~~--~~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQG-EKLY--AIQPEETLTLDV 464 (473)
T ss_pred CCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcch-hhHh--hccCCCEEEEEC
Confidence 468899987 5554 69999998765 889999999999999754322 1222 224688888877
Q ss_pred cCCceEE
Q 000793 928 KSTNLII 934 (1282)
Q Consensus 928 s~~~v~l 934 (1282)
....+.+
T Consensus 465 ~~G~v~v 471 (473)
T PRK11377 465 KTQRLNR 471 (473)
T ss_pred CCCEEEe
Confidence 6655543
No 24
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=92.44 E-value=0.14 Score=66.61 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=67.5
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEE-
Q 000793 829 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT- 905 (1282)
Q Consensus 829 ~wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at- 905 (1282)
.=..++||.++|.++++....+.. ....+.|||++..+= ++++ ..+.||||..-. ..||.++.||++|||-+.
T Consensus 358 ~G~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg 433 (795)
T PRK06464 358 EGRAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVG 433 (795)
T ss_pred eCcccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEc
Confidence 344578999999999998766543 234567888875422 3333 279999998765 899999999999999743
Q ss_pred ecchHHHHHHHhcCCCeEEE---EEcCCceEEe
Q 000793 906 CFDQNILRNLRLKEGKAVSI---RLKSTNLIIS 935 (1282)
Q Consensus 906 ~~D~~~~~~l~~l~Gk~V~l---~vs~~~v~l~ 935 (1282)
|.+ ....+ .+|..|.+ ......|...
T Consensus 434 ~~~--~~~~l--~~G~~v~v~~~Dg~~G~v~~~ 462 (795)
T PRK06464 434 TGN--ATEVL--KDGQEVTVSCAEGDTGYVYEG 462 (795)
T ss_pred cCc--cccee--cCCCEEEEEeccCCCcEEEeC
Confidence 333 22222 36999988 5544444443
No 25
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=91.80 E-value=0.16 Score=66.64 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=66.2
Q ss_pred cEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEec
Q 000793 830 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 907 (1282)
Q Consensus 830 wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 907 (1282)
=...|||.|+|.+++...-..-. .....+.|||...+ --++++- .+.||||..-. ..||.+|.||++|||-++.-
T Consensus 397 G~~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~et-~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~ 473 (879)
T PRK09279 397 GLPASPGAATGKIVFTADEAEAL-AARGEKVILVRPET-SPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGA 473 (879)
T ss_pred CcccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECCC-CHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEecc
Confidence 34569999999997743321111 12235677777643 3334442 58999998766 89999999999999996543
Q ss_pred chHHHH---------HHHhcCCCeEEEEEcCCceEEee
Q 000793 908 DQNILR---------NLRLKEGKAVSIRLKSTNLIISD 936 (1282)
Q Consensus 908 D~~~~~---------~l~~l~Gk~V~l~vs~~~v~l~~ 936 (1282)
..-.++ .-.-.+|..|.+..+...|...+
T Consensus 474 ~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~ 511 (879)
T PRK09279 474 GALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGE 511 (879)
T ss_pred CcceEecccCEEEECCEEecCCCEEEEECCCCEEEECC
Confidence 211110 11224688888887776665544
No 26
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=91.75 E-value=0.46 Score=45.54 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=40.3
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCcccccccccccccEEEEEEecCCcceeEEEEEEeccccccccccCCccccc
Q 000793 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (1282)
Q Consensus 46 ~~~l~lHWGv~~~~~~~W~~P~~-~P-k~~a~~Tpf~~~g~~~~v~ie~~d~~i~ai~Fvl~de~~~~W~k~~g~nf~v~ 123 (1282)
+..+.||+|. +.|..++. .| +..+ + ..++....+|+++..+ ..|+|||+|. .+.|=.++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~a-~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPEDA-YVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TTT-SEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCCc-eEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57977765 22 1111 1 1156677778776544 4799999998 899999999999987
Q ss_pred C
Q 000793 124 I 124 (1282)
Q Consensus 124 l 124 (1282)
+
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 27
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=90.42 E-value=0.29 Score=64.25 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=67.2
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEe
Q 000793 829 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC 906 (1282)
Q Consensus 829 ~wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 906 (1282)
.=...+||.++|++++...-.... .....+.|||....+ -++++ ..+.||||..-. ..||.++.||++|||-++.
T Consensus 390 ~G~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG 466 (856)
T TIGR01828 390 KGLPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSG 466 (856)
T ss_pred cCcccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEc
Confidence 334579999999997763321110 122456788887542 22344 268999998776 8999999999999999664
Q ss_pred cchHHHH---------HHHhcCCCeEEEEEcCCceEEee
Q 000793 907 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 936 (1282)
Q Consensus 907 ~D~~~~~---------~l~~l~Gk~V~l~vs~~~v~l~~ 936 (1282)
-....++ .-.-.+|..|.+..+...|...+
T Consensus 467 ~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~ 505 (856)
T TIGR01828 467 CEELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGE 505 (856)
T ss_pred ccccccccccceeeeCCeEecCCCEEEEECCCCEEEECC
Confidence 4321111 11224688888877765555543
No 28
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=88.63 E-value=0.56 Score=59.16 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=54.1
Q ss_pred CCCeEEEEeCCCCcc--ccC-CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEEcCCceE
Q 000793 857 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 933 (1282)
Q Consensus 857 ~~p~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~vs~~~v~ 933 (1282)
..|.|||++..+-.+ .++ .+|.||||..-. ..||.+++||++|||-+..-. +.... -.+|..|.+......|.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEEE
Confidence 457788887543322 111 269999998766 889999999999999765443 22222 23699999888877777
Q ss_pred EeecC
Q 000793 934 ISDIS 938 (1282)
Q Consensus 934 l~~~~ 938 (1282)
+.+..
T Consensus 229 ~~P~~ 233 (575)
T PRK11177 229 VNPTN 233 (575)
T ss_pred ECCCH
Confidence 76543
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=87.83 E-value=0.73 Score=58.10 Aligned_cols=76 Identities=22% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEEcCCce
Q 000793 857 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 932 (1282)
Q Consensus 857 ~~p~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~vs~~~v 932 (1282)
..|.|||++..+=. ++. .++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.|
T Consensus 152 ~~~~IlVa~~l~Ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v 226 (565)
T TIGR01417 152 QDEVILVAEDLTPS-ETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIV 226 (565)
T ss_pred CCCeEEEecCCCHH-HHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEE
Confidence 45778888743211 221 269999998765 889999999999999765543 22222 2379999998887777
Q ss_pred EEeec
Q 000793 933 IISDI 937 (1282)
Q Consensus 933 ~l~~~ 937 (1282)
.+.+.
T Consensus 227 ~~~P~ 231 (565)
T TIGR01417 227 IFNPS 231 (565)
T ss_pred EeCCC
Confidence 77653
No 30
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=87.67 E-value=1.3 Score=43.97 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=69.2
Q ss_pred cEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEec
Q 000793 830 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 907 (1282)
Q Consensus 830 wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 907 (1282)
=|.|-.|.+.|+.++-++-.+... .+..-.||++.+.|+ |-+|. -..||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 5 GqgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~-d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 5 GQGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDA-DFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred ceeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCCh-hhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 366778899999988877555322 234567888887654 45664 68999999988 99999999999999997744
Q ss_pred chHHHHHHHhcCCCeEEEEEcCCceEEe
Q 000793 908 DQNILRNLRLKEGKAVSIRLKSTNLIIS 935 (1282)
Q Consensus 908 D~~~~~~l~~l~Gk~V~l~vs~~~v~l~ 935 (1282)
+.. .+.+ .+|..|.+..+- ++.++
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY~ 105 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVYE 105 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEEe
Confidence 422 2211 368877766542 45553
No 31
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=86.11 E-value=1.1 Score=55.94 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEE
Q 000793 857 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 927 (1282)
Q Consensus 857 ~~p~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~v 927 (1282)
++|.||+++ |+.| .|.|++|..-+ ..||.++.||..+||-+.-.... ...+ .+|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v--~~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAV--KDGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhcc--cCCCEEEEEC
Confidence 467888887 6665 59999997766 78999999999999997766633 3333 3899999988
Q ss_pred cCCceEEeec
Q 000793 928 KSTNLIISDI 937 (1282)
Q Consensus 928 s~~~v~l~~~ 937 (1282)
..+.+.+.+.
T Consensus 224 ~~G~vi~nP~ 233 (574)
T COG1080 224 INGEVIVNPD 233 (574)
T ss_pred CCCeEEECcC
Confidence 8877888764
No 32
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=85.36 E-value=1.1 Score=58.31 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEEcCCce
Q 000793 857 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 932 (1282)
Q Consensus 857 ~~p~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~vs~~~v 932 (1282)
..|.||+++..+-. +++ .+|+||+|..-. ..||.++.||++|||.+.=-+ .... ...|..|.+....+.|
T Consensus 320 ~~~~Ilva~~l~ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTAT-LLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCHH-HHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 45778888742211 112 169999998876 889999999999999754222 2222 2359999988877778
Q ss_pred EEeecC
Q 000793 933 IISDIS 938 (1282)
Q Consensus 933 ~l~~~~ 938 (1282)
.+.+.+
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 777643
No 33
>PRK03955 hypothetical protein; Reviewed
Probab=79.18 E-value=8.5 Score=40.00 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=64.1
Q ss_pred EEeeeeeEEEEEEEeccccc----ccccc----------cC---CCeEEEEeCCCCccc--------cCC--CcEEEEcC
Q 000793 831 QVISPVEVCGFITSVNELIT----LQNKV----------YR---RPTIIIASRITGEEE--------IPV--GVVAVLTP 883 (1282)
Q Consensus 831 qvlspG~A~G~L~~V~~l~~----~~~~~----------~~---~p~Ill~~~~~G~EE--------IP~--~VaGVit~ 883 (1282)
..+++|.|.|.+.+.++-.. +.+.+ +. .-.||++....|--- +-. .=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988764221 11111 00 235899987777621 111 23688988
Q ss_pred CCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEEEEcCCceEE
Q 000793 884 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 934 (1282)
Q Consensus 884 ~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l~vs~~~v~l 934 (1282)
+.-+.|||-++-| +||.+...+ .+.|+ +|.+|++..+...|.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 8878999999999 999998666 33332 8999998765544544
No 34
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=68.13 E-value=6.4 Score=32.75 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=26.6
Q ss_pred hhhHhhhhhhhhhcCCCCCCChhhhhHHHHHHHHHHHH
Q 000793 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (1282)
Q Consensus 138 e~lv~~~a~~~We~~g~p~~~~~~~~~~~~~a~~~l~~ 175 (1282)
++.|..+||-.||+.|.|+-.++ +...+|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788999999999999977665 455566666543
No 35
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=62.48 E-value=5 Score=50.19 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=53.1
Q ss_pred ccccCCCeEEEEeCCCCcc--ccC-CCcEEEEcCCCCCccchhhhhcccCCceeEEe-cchHHHHHHHhcCCCeEEEEEc
Q 000793 853 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 928 (1282)
Q Consensus 853 ~~~~~~p~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~-~D~~~~~~l~~l~Gk~V~l~vs 928 (1282)
...+.++.|+|++..+-.| |.| ...+||++.+-. .-||+++.||.+|||.+-= -|- .....+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECC
Confidence 3456678899998654433 344 269999987754 7899999999999998654 331 123456766665544
Q ss_pred CCceEEee
Q 000793 929 STNLIISD 936 (1282)
Q Consensus 929 ~~~v~l~~ 936 (1282)
...+.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 44566654
No 36
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=61.62 E-value=3.9 Score=53.42 Aligned_cols=126 Identities=21% Similarity=0.206 Sum_probs=76.6
Q ss_pred chhcccccHHHHhhhhhHHHHHHHHhhHHHHHHHhcCCCcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCc
Q 000793 791 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 870 (1282)
Q Consensus 791 ~~~v~~FtEe~IRas~~f~lS~ll~~L~p~lr~~a~~~~wqvlspG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~ 870 (1282)
+|.++- .+..+|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++.+..+. ......+||+....+.
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~p- 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDP- 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCH-
Confidence 455554 5667788887776666655555 111111222 8999999999888776554 2223467888875433
Q ss_pred cccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHHHhcCCCeEEE
Q 000793 871 EEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSI 925 (1282)
Q Consensus 871 EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~D~~~~~~l~~l~Gk~V~l 925 (1282)
+.+|. ...||+|.+-. ..||-+|.||.+|+|-+.=-......-....+|..+.+
T Consensus 377 d~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~~~~~~~~~~~~~i~~~ 432 (740)
T COG0574 377 DWVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGSATKILKTLKDGTIVTL 432 (740)
T ss_pred HHhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCchhhhhhhhcccceEEEe
Confidence 33442 35567765555 89999999999999985543323221122234444444
No 37
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=37.18 E-value=59 Score=36.26 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHhcC--CCeeEEEEEE--CCeEEEEeeccC
Q 000793 1232 PMVGDKSFQTSVFSKIAETGKIIESLYG--YPQDIEGVLK--DGLIYVVQARPQ 1281 (1282)
Q Consensus 1232 plLtD~e~r~~ll~rLa~lg~~IE~~fG--~PQDIEWai~--~g~LyILQsRPq 1281 (1282)
+.|+++. .++|.+.+.+|-+.+| ++--|||+++ ++++|++...|-
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 5577766 7899999999999988 6899999999 799999998774
No 38
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.97 E-value=1.4e+02 Score=34.29 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCCccHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 000793 461 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQRNNG---------CKTG---------MMEEW 521 (1282)
Q Consensus 461 ~~~t~~~~~~~~~~~~~r~~~R~~l~~~~rGg~g~~gq-~iRd~Il~i~~~n~---------~k~g---------~~e~W 521 (1282)
+|+...+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ +.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888888999999999888777 777777887 55544433332211 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHHcCCChh
Q 000793 522 HQKLHNNTSPDDIIICEALLNYIRCGFKID 551 (1282)
Q Consensus 522 HQkLhnnttpddv~ICea~l~~l~s~~~~~ 551 (1282)
-++ ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 654
No 39
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=31.02 E-value=56 Score=37.19 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.9
Q ss_pred ChhhHHHHHhhC-CCChhhhhcCCCC
Q 000793 549 KIDAYWQTLNCH-GLSKQKLASYDRP 573 (1282)
Q Consensus 549 ~~~~yw~~l~~~-g~t~e~l~s~dr~ 573 (1282)
|.-++|..+-+. |+|+|++.|++ |
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-p 116 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-P 116 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-C
Confidence 667899999996 99999999999 6
No 40
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=26.59 E-value=51 Score=37.51 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHccCCccHHHHHHHHhhccCCCCCCCchhh
Q 000793 456 ISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRI 500 (1282)
Q Consensus 456 ~~~~q~~~t~~~~~~~~~~~~~r~~~R~~l~~~~rGg~g~~gq~i 500 (1282)
+++-|..|...||+.+..+-..++..|--..||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 34567889999999999999999988888999999998 56554
No 41
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=22.12 E-value=2.2e+03 Score=31.35 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=67.5
Q ss_pred HHHHHhccccccCCChhhHHHHHHHHHhhccccCCCchhHHHHHHHHHhhhhh----ccCCchHHHHHHHHHHHHHHHHH
Q 000793 690 KTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSES----YRTNDAQWALQAKAILDRLQLVL 765 (1282)
Q Consensus 690 r~~ie~~~~~~~~~~~~~~~~~~~~~l~n~~ls~~~n~~l~~~l~~W~~~~~~----~~~~~~~wAL~~kA~ldR~rr~~ 765 (1282)
|+.||..+-.+.. +|||++-++.-|||||.+-.|.|-- -.|..=..|..+ .+.. ++ -.|||+|--.=.+-
T Consensus 393 rgfMeavVAQL~s-~peeL~QV~AsvLRNLSWRAD~nmK--kvLrE~GsVtaLa~~al~~~-kE--sTLKavLSALWNLS 466 (2195)
T KOG2122|consen 393 RGFMEAVVAQLIS-APEELLQVYASVLRNLSWRADSNMK--KVLRETGSVTALAACALRNK-KE--STLKAVLSALWNLS 466 (2195)
T ss_pred hhHHHHHHHHHhc-ChHHHHHHHHHHHHhccccccccHH--HHHHhhhhHHHHHHHHHHhc-cc--chHHHHHHHHhhhh
Confidence 3344443333333 5899999999999999999886531 111111111111 1111 11 24777877776666
Q ss_pred HHHHHHHHHh--hCchHHHhhhhcCcc--chhcccccHHHHhhhhhHHHHHHHHhhHHH
Q 000793 766 AERSQTYQKK--FQPSVKYLGCLLGVE--KYVIDNFTEELVRAQSEAVLSILINRFEPV 820 (1282)
Q Consensus 766 ~~~~d~~~~~--~q~~a~~lG~~lgie--~~~v~~FtEe~IRas~~f~lS~ll~~L~p~ 820 (1282)
+..++.=..+ .+..-.+|-+.|.++ .+...+.-- =+|++-.+|.++..=.++
T Consensus 467 AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs---aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 467 AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES---AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred hcccccchhhhcccchHHHHHhhccccCCcchhhhhhc---CccHHHHHHhHhhccchH
Confidence 5444433332 456667888888888 444332211 245666777776655554
Done!