BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000794
         (1281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ITH|A Chain A, Structure Determination And Refinement Of Homotetrameric
           Hemoglobin From Urechis Caupo At 2.5 Angstroms
           Resolution
 pdb|1ITH|B Chain B, Structure Determination And Refinement Of Homotetrameric
           Hemoglobin From Urechis Caupo At 2.5 Angstroms
           Resolution
          Length = 141

 Score = 31.2 bits (69), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 910 SSDSWNYQPATVHGCDLAHLSRMARDRNSDFLNGQRESPAPKSPSLGPTNYMDSVAFALG 969
           ++DS  ++  T +  DLA   + +    S  L G R +PA K+ +L   NY+D V  ALG
Sbjct: 25  AADSIFFKYLTAYPGDLAFFHKFS----SVPLYGLRSNPAYKAQTLTVINYLDKVVDALG 80


>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
           From C. Elegans, Northeast Structural Genomics Target
           Wr66
 pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
           From C. Elegans, Northeast Structural Genomics Target
           Wr66
          Length = 339

 Score = 30.0 bits (66), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 713 EARAKKLDLVLGVDSKPASLKIDTSAKEFSGYIPTVGRVPDSLLNSSLYDSPKHRVQNSM 772
           +   K  DLVLG D+      ID   K+ +    TVGRV + + NS+L+   K       
Sbjct: 41  DKNGKNQDLVLGFDT------IDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTXTPN 94

Query: 773 DSSYGVQRGSSSLWSNQMQLLDAYAQNANHSV 804
           +  + +  G + L   + +++    ++ + SV
Sbjct: 95  NGPHYLHGGPNGLGYRKWEVVRHAPESVSFSV 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,228,777
Number of Sequences: 62578
Number of extensions: 1402121
Number of successful extensions: 2780
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2779
Number of HSP's gapped (non-prelim): 6
length of query: 1281
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1171
effective length of database: 8,089,757
effective search space: 9473105447
effective search space used: 9473105447
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)