Query 000794
Match_columns 1281
No_of_seqs 232 out of 1333
Neff 4.1
Searched_HMMs 46136
Date Mon Apr 1 23:38:43 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 5E-103 1E-107 888.5 21.2 457 17-487 20-498 (503)
2 PRK00701 manganese transport p 100.0 1.8E-76 4E-81 685.6 47.0 404 17-426 25-438 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 6.4E-73 1.4E-77 650.1 46.0 400 17-426 8-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 1.5E-72 3.2E-77 644.6 40.1 365 23-392 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 4.5E-61 9.8E-66 541.5 35.0 350 45-399 1-358 (358)
6 TIGR02119 panF sodium/pantothe 99.0 4.7E-06 1E-10 98.8 42.3 121 34-154 50-176 (471)
7 TIGR00813 sss transporter, SSS 99.0 5.1E-07 1.1E-11 104.7 32.9 121 32-155 11-136 (407)
8 PRK15419 proline:sodium sympor 99.0 6.6E-06 1.4E-10 98.7 40.3 122 34-155 50-180 (502)
9 PF00474 SSF: Sodium:solute sy 98.9 1.7E-07 3.7E-12 108.2 25.6 119 35-153 17-138 (406)
10 TIGR02121 Na_Pro_sym sodium/pr 98.9 2.3E-05 4.9E-10 93.8 43.9 120 36-155 48-176 (487)
11 PRK09442 panF sodium/panthothe 98.9 3.1E-05 6.8E-10 92.3 44.2 116 37-155 54-178 (483)
12 TIGR02711 symport_actP cation/ 98.9 3.9E-05 8.5E-10 93.3 43.1 123 32-155 75-200 (549)
13 PRK12488 acetate permease; Pro 98.9 1.6E-05 3.5E-10 96.6 39.7 125 32-157 75-202 (549)
14 PRK09395 actP acetate permease 98.8 1.6E-05 3.5E-10 96.5 38.7 125 32-157 77-204 (551)
15 PF03222 Trp_Tyr_perm: Tryptop 98.8 2.3E-05 5E-10 91.9 37.2 158 27-188 4-169 (394)
16 PRK15132 tyrosine transporter 98.7 4.7E-05 1E-09 89.8 36.0 341 27-389 4-360 (403)
17 COG1457 CodB Purine-cytosine p 98.6 0.00018 4E-09 85.7 36.9 328 58-413 53-388 (442)
18 TIGR03648 Na_symport_lg probab 98.6 0.0007 1.5E-08 82.6 41.5 120 32-154 40-164 (552)
19 PRK10249 phenylalanine transpo 98.6 0.0015 3.3E-08 77.6 42.7 129 1-138 1-138 (458)
20 PRK13629 threonine/serine tran 98.5 0.00033 7.1E-09 83.6 36.0 150 33-188 26-187 (443)
21 COG0591 PutP Na+/proline sympo 98.5 0.0011 2.4E-08 80.1 40.7 129 38-166 50-186 (493)
22 PRK15049 L-asparagine permease 98.5 0.0043 9.3E-08 74.9 45.3 37 286-323 294-330 (499)
23 PRK10484 putative transporter; 98.5 0.0043 9.3E-08 75.4 45.1 110 33-142 47-164 (523)
24 PRK10483 tryptophan permease; 98.5 0.00017 3.7E-09 85.5 31.9 153 25-186 10-174 (414)
25 PRK11017 codB cytosine permeas 98.4 0.002 4.3E-08 75.9 39.3 107 58-166 43-150 (404)
26 TIGR00814 stp serine transport 98.4 0.00041 9E-09 81.8 30.7 124 60-187 33-170 (397)
27 TIGR00837 araaP aromatic amino 98.3 0.00057 1.2E-08 78.6 30.8 72 283-355 255-326 (381)
28 PRK10238 aromatic amino acid t 98.3 0.0028 6.1E-08 75.3 37.4 112 28-143 21-134 (456)
29 PRK11375 allantoin permease; P 98.3 0.0051 1.1E-07 74.4 40.0 48 57-104 60-107 (484)
30 PRK09664 tryptophan permease T 98.3 0.0014 3.1E-08 77.9 34.3 152 27-187 10-174 (415)
31 PF01235 Na_Ala_symp: Sodium:a 98.3 0.0005 1.1E-08 81.6 30.1 276 36-327 29-338 (416)
32 PRK11387 S-methylmethionine tr 98.3 0.021 4.6E-07 68.2 45.9 41 284-325 278-318 (471)
33 TIGR00905 2A0302 transporter, 98.3 0.016 3.4E-07 69.3 41.4 38 285-323 272-309 (473)
34 TIGR01773 GABAperm gamma-amino 98.2 0.032 6.9E-07 66.1 43.5 72 29-104 22-94 (452)
35 PRK11049 D-alanine/D-serine/gl 98.2 0.024 5.1E-07 67.8 40.9 33 291-323 289-321 (469)
36 PRK10580 proY putative proline 98.2 0.037 8.1E-07 65.8 43.7 68 29-104 19-91 (457)
37 TIGR02358 thia_cytX probable h 98.2 0.024 5.2E-07 66.7 39.4 107 57-165 29-141 (386)
38 PF05525 Branch_AA_trans: Bran 98.2 0.012 2.5E-07 70.6 36.8 337 32-389 9-359 (427)
39 COG3949 Uncharacterized membra 98.1 0.0033 7.2E-08 72.6 30.7 137 21-165 5-142 (349)
40 TIGR00910 2A0307_GadC glutamat 98.1 0.02 4.3E-07 69.5 39.2 50 53-103 29-83 (507)
41 TIGR00930 2a30 K-Cl cotranspor 98.1 0.011 2.4E-07 76.9 38.2 31 296-326 386-416 (953)
42 TIGR00908 2A0305 ethanolamine 98.1 0.051 1.1E-06 64.1 41.9 38 65-104 52-89 (442)
43 TIGR00796 livcs branched-chain 98.1 0.015 3.2E-07 68.7 35.2 74 33-107 2-75 (378)
44 PRK10746 putative transport pr 98.1 0.056 1.2E-06 64.8 40.6 72 68-141 58-130 (461)
45 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.0071 1.5E-07 71.9 30.4 76 38-114 26-104 (442)
46 PRK11021 putative transporter; 97.9 0.085 1.9E-06 61.8 39.8 38 285-323 250-287 (410)
47 TIGR00909 2A0306 amino acid tr 97.9 0.067 1.5E-06 62.6 36.8 40 286-326 269-308 (429)
48 COG0814 SdaC Amino acid permea 97.9 0.04 8.7E-07 65.6 35.0 156 29-188 12-177 (415)
49 TIGR00907 2A0304 amino acid pe 97.9 0.025 5.5E-07 67.5 33.6 37 285-321 293-329 (482)
50 TIGR00913 2A0310 amino acid pe 97.9 0.12 2.6E-06 61.8 43.6 37 289-325 282-318 (478)
51 TIGR03810 arg_ornith_anti argi 97.9 0.12 2.7E-06 61.8 42.4 40 283-323 266-305 (468)
52 COG4147 DhlC Predicted symport 97.9 0.018 3.9E-07 69.3 30.8 229 74-318 92-366 (529)
53 COG0733 Na+-dependent transpor 97.9 0.027 5.8E-07 67.5 32.4 67 38-107 21-93 (439)
54 TIGR00911 2A0308 L-type amino 97.9 0.14 3.1E-06 61.7 39.6 36 66-103 90-125 (501)
55 PF02133 Transp_cyt_pur: Perme 97.8 0.0017 3.6E-08 76.5 22.1 80 34-114 17-99 (440)
56 TIGR03813 put_Glu_GABA_T putat 97.8 0.16 3.4E-06 60.9 41.1 69 29-103 6-79 (474)
57 TIGR00835 agcS amino acid carr 97.8 0.031 6.8E-07 67.0 32.0 45 285-330 324-368 (425)
58 PRK11357 frlA putative fructos 97.7 0.17 3.7E-06 59.9 36.4 38 64-103 54-91 (445)
59 PRK15433 branched-chain amino 97.7 0.25 5.5E-06 59.7 36.9 80 32-112 14-93 (439)
60 PF13520 AA_permease_2: Amino 97.7 0.22 4.8E-06 58.0 38.9 43 284-326 260-302 (426)
61 COG1113 AnsP Gamma-aminobutyra 97.6 0.092 2E-06 63.3 31.0 122 40-166 29-157 (462)
62 COG4145 PanF Na+/panthothenate 97.6 0.3 6.5E-06 57.8 33.9 121 32-155 47-176 (473)
63 COG1115 AlsT Na+/alanine sympo 97.6 0.16 3.4E-06 61.2 32.6 273 36-328 73-383 (452)
64 PRK10197 gamma-aminobutyrate t 97.6 0.36 7.7E-06 57.7 42.9 36 291-326 260-295 (446)
65 PRK10644 arginine:agmatin anti 97.5 0.42 9.1E-06 56.8 41.9 38 64-103 51-88 (445)
66 COG1114 BrnQ Branched-chain am 97.3 0.79 1.7E-05 55.1 35.8 77 31-108 10-86 (431)
67 PRK10836 lysine transporter; P 97.1 1.1 2.4E-05 54.2 40.1 37 287-324 288-324 (489)
68 PRK10655 potE putrescine trans 97.1 1 2.2E-05 53.4 43.7 33 69-103 54-86 (438)
69 TIGR00912 2A0309 spore germina 97.0 1 2.2E-05 51.9 35.2 105 63-175 40-151 (359)
70 KOG1289 Amino acid transporter 96.8 0.4 8.6E-06 59.1 25.5 157 255-415 296-471 (550)
71 TIGR03428 ureacarb_perm permea 96.7 2.2 4.8E-05 51.4 39.5 42 60-103 54-95 (475)
72 PLN03074 auxin influx permease 96.7 1.1 2.4E-05 54.7 28.6 62 322-385 336-398 (473)
73 TIGR00906 2A0303 cationic amin 96.6 3.3 7.1E-05 51.5 40.4 33 291-323 308-340 (557)
74 PRK10435 cadB lysine/cadaverin 96.3 3.6 7.8E-05 49.1 41.7 37 64-103 48-84 (435)
75 COG0531 PotE Amino acid transp 96.3 3.4 7.3E-05 48.6 38.5 34 287-321 278-311 (466)
76 PRK09928 choline transport pro 96.2 3.8 8.2E-05 52.3 30.0 65 68-134 158-230 (679)
77 KOG1286 Amino acid transporter 96.2 0.71 1.5E-05 57.5 23.5 35 292-326 313-350 (554)
78 PRK15238 inner membrane transp 96.1 4.9 0.00011 48.9 39.0 71 29-103 12-87 (496)
79 COG1953 FUI1 Cytosine/uracil/t 96.1 5.4 0.00012 49.2 30.0 61 41-101 53-118 (497)
80 PF00209 SNF: Sodium:neurotran 96.1 2.6 5.7E-05 51.7 27.5 59 39-97 18-78 (523)
81 PF00324 AA_permease: Amino ac 96.1 0.12 2.7E-06 61.7 15.9 29 291-319 283-311 (478)
82 PF03845 Spore_permease: Spore 95.0 8.8 0.00019 43.9 32.5 116 63-186 38-160 (320)
83 PF02554 CstA: Carbon starvati 94.9 1.5 3.2E-05 52.3 18.7 65 36-104 64-132 (376)
84 COG1292 BetT Choline-glycine b 93.9 23 0.0005 44.4 26.8 72 309-387 416-490 (537)
85 KOG1303 Amino acid transporter 93.8 22 0.00047 43.6 31.8 64 322-387 330-398 (437)
86 PF02028 BCCT: BCCT family tra 93.8 23 0.0005 43.9 29.1 87 294-387 389-477 (485)
87 KOG2349 Na+:iodide/myo-inosito 93.5 1.3 2.7E-05 55.5 15.0 113 37-153 58-175 (585)
88 TIGR00842 bcct choline/carniti 93.2 28 0.0006 43.0 27.2 88 294-387 353-445 (453)
89 PTZ00206 amino acid transporte 93.0 28 0.00061 42.5 31.5 28 78-105 112-140 (467)
90 PRK15015 carbon starvation pro 92.8 38 0.00083 43.5 35.4 57 45-103 102-162 (701)
91 KOG1288 Amino acid transporter 92.8 4 8.6E-05 51.9 17.5 45 280-327 358-402 (945)
92 COG0833 LysP Amino acid transp 92.2 41 0.00088 42.4 28.8 139 29-179 60-203 (541)
93 COG1966 CstA Carbon starvation 91.3 50 0.0011 41.7 32.5 53 50-103 75-131 (575)
94 PRK09950 putative transporter; 90.9 52 0.0011 41.2 32.5 88 294-387 399-491 (506)
95 KOG1305 Amino acid transporter 90.2 53 0.0011 40.1 25.2 85 332-425 319-403 (411)
96 TIGR00844 c_cpa1 na(+)/h(+) an 87.8 1.1E+02 0.0023 40.6 26.5 22 206-227 132-153 (810)
97 KOG1304 Amino acid transporter 86.7 92 0.002 38.6 28.8 75 338-414 364-439 (449)
98 KOG3660 Sodium-neurotransmitte 85.6 1.2E+02 0.0027 39.0 28.2 70 25-97 36-111 (629)
99 COG3949 Uncharacterized membra 84.2 12 0.00026 44.4 12.5 88 286-388 71-159 (349)
100 PRK03356 L-carnitine/gamma-but 83.4 1.4E+02 0.0029 37.7 33.1 82 300-387 407-493 (504)
101 PRK13108 prolipoprotein diacyl 82.8 81 0.0018 39.2 19.3 15 414-428 233-247 (460)
102 PLN00150 potassium ion transpo 81.2 1.6E+02 0.0036 38.8 21.8 16 710-725 713-728 (779)
103 PLN00149 potassium transporter 80.2 1.9E+02 0.0041 38.3 21.8 16 710-725 713-728 (779)
104 PF12794 MscS_TM: Mechanosensi 77.9 42 0.00091 39.7 14.4 17 340-356 131-147 (340)
105 PRK09824 PTS system beta-gluco 75.3 53 0.0012 42.2 15.1 94 130-226 205-312 (627)
106 KOG2348 Urea transporter [Amin 73.4 11 0.00024 46.3 8.1 104 41-144 68-174 (667)
107 PRK00293 dipZ thiol:disulfide 71.2 3E+02 0.0064 35.1 21.3 58 361-424 326-383 (571)
108 KOG3659 Sodium-neurotransmitte 69.3 3.4E+02 0.0074 35.1 22.0 147 255-404 374-542 (629)
109 TIGR01995 PTS-II-ABC-beta PTS 68.4 2.5E+02 0.0055 36.1 18.8 10 204-213 281-290 (610)
110 PLN00151 potassium transporter 66.8 2.3E+02 0.0049 37.9 17.9 16 710-725 786-801 (852)
111 PF02990 EMP70: Endomembrane p 66.0 1.7E+02 0.0037 36.7 16.4 13 474-486 482-494 (521)
112 PF01490 Aa_trans: Transmembra 64.1 0.24 5.2E-06 57.1 -7.8 51 337-389 323-373 (409)
113 COG1294 AppB Cytochrome bd-typ 60.7 3.8E+02 0.0081 32.5 23.8 25 446-470 316-340 (346)
114 COG1283 NptA Na+/phosphate sym 58.7 4.9E+02 0.011 33.3 24.0 42 286-327 166-207 (533)
115 PF05977 MFS_3: Transmembrane 58.7 4.7E+02 0.01 33.0 34.6 39 103-142 14-52 (524)
116 PF06738 DUF1212: Protein of u 56.7 54 0.0012 35.0 8.8 10 125-134 115-124 (193)
117 PF02705 K_trans: K+ potassium 56.1 5.4E+02 0.012 32.9 23.3 21 147-167 140-160 (534)
118 TIGR00794 kup potassium uptake 54.8 6.3E+02 0.014 33.3 20.8 22 146-167 175-196 (688)
119 PRK03612 spermidine synthase; 53.6 2.9E+02 0.0062 34.8 15.4 44 49-92 25-69 (521)
120 PRK11469 hypothetical protein; 53.5 2.4E+02 0.0053 31.0 13.1 28 131-158 129-156 (188)
121 COG1283 NptA Na+/phosphate sym 52.6 1.9E+02 0.0042 36.7 13.5 46 285-330 38-83 (533)
122 PF05313 Pox_P21: Poxvirus P21 49.1 1.4E+02 0.003 33.1 10.2 47 369-416 87-134 (189)
123 PRK10263 DNA translocase FtsK; 48.8 51 0.0011 45.4 8.4 9 130-138 78-86 (1355)
124 PLN00148 potassium transporter 47.9 8.4E+02 0.018 32.7 19.4 22 146-167 204-225 (785)
125 COG0659 SUL1 Sulfate permease 47.8 7.1E+02 0.015 31.9 27.2 121 23-155 52-194 (554)
126 PRK09796 PTS system cellobiose 47.5 5.8E+02 0.013 32.1 16.5 94 130-226 207-314 (472)
127 PF05525 Branch_AA_trans: Bran 46.6 5.9E+02 0.013 31.6 16.2 62 88-149 263-325 (427)
128 TIGR02865 spore_II_E stage II 45.6 8.8E+02 0.019 32.3 18.9 20 367-387 267-286 (764)
129 PRK02983 lysS lysyl-tRNA synth 45.4 3.9E+02 0.0085 36.9 15.7 50 370-420 114-163 (1094)
130 COG2966 Uncharacterized conser 45.2 1.1E+02 0.0025 35.0 9.4 32 125-157 137-168 (250)
131 PTZ00243 ABC transporter; Prov 45.1 1.2E+03 0.026 33.6 24.1 21 75-95 307-327 (1560)
132 TIGR02840 spore_YtaF putative 44.6 2.5E+02 0.0054 31.2 11.7 28 131-158 152-179 (206)
133 PF07907 YibE_F: YibE/F-like p 44.4 5.5E+02 0.012 29.5 19.5 41 131-171 46-87 (244)
134 PF02322 Cyto_ox_2: Cytochrome 42.2 3.2E+02 0.007 32.4 12.8 26 70-95 169-194 (328)
135 COG1284 Uncharacterized conser 42.0 5.6E+02 0.012 30.2 14.5 16 120-135 44-59 (289)
136 PRK15433 branched-chain amino 41.6 4E+02 0.0087 33.2 13.8 62 88-149 267-328 (439)
137 COG3696 Putative silver efflux 41.3 9.3E+02 0.02 33.0 17.3 74 135-222 340-415 (1027)
138 COG0814 SdaC Amino acid permea 41.2 6.8E+02 0.015 30.6 15.6 32 282-314 73-104 (415)
139 PF14362 DUF4407: Domain of un 40.1 1.3E+02 0.0029 34.6 9.2 29 122-150 32-60 (301)
140 TIGR03732 lanti_perm_MutE lant 39.5 3.8E+02 0.0082 30.2 12.3 58 338-396 14-73 (241)
141 PF06570 DUF1129: Protein of u 38.7 5.7E+02 0.012 28.1 13.3 50 372-424 120-170 (206)
142 KOG2234 Predicted UDP-galactos 37.9 4.5E+02 0.0097 31.9 13.0 70 304-378 188-270 (345)
143 PRK13743 conjugal transfer pro 37.5 2.4E+02 0.0053 29.9 9.4 39 277-317 75-113 (141)
144 TIGR02711 symport_actP cation/ 36.9 8.1E+02 0.018 31.0 15.8 100 265-379 119-218 (549)
145 KOG1134 Uncharacterized conser 36.6 1.2E+03 0.025 31.1 18.4 29 368-396 569-599 (728)
146 COG4858 Uncharacterized membra 36.2 6.8E+02 0.015 28.3 13.4 85 367-464 129-213 (226)
147 TIGR02916 PEP_his_kin putative 36.0 1.1E+03 0.023 30.4 18.8 18 203-220 193-210 (679)
148 PF05297 Herpes_LMP1: Herpesvi 35.6 12 0.00027 43.4 0.0 49 142-190 118-166 (381)
149 TIGR00832 acr3 arsenical-resis 34.8 7.4E+02 0.016 29.4 14.2 27 364-390 175-201 (328)
150 TIGR00844 c_cpa1 na(+)/h(+) an 34.7 1.3E+03 0.028 31.2 19.3 26 56-81 205-230 (810)
151 TIGR02358 thia_cytX probable h 34.6 8E+02 0.017 29.5 14.7 72 57-131 203-276 (386)
152 PRK09509 fieF ferrous iron eff 34.6 6.3E+02 0.014 29.2 13.4 32 394-425 72-103 (299)
153 KOG0569 Permease of the major 33.8 1E+03 0.022 30.1 15.7 28 359-386 114-141 (485)
154 PRK11007 PTS system trehalose( 33.6 1.1E+03 0.023 29.8 18.2 86 138-226 231-326 (473)
155 CHL00204 ycf1 Ycf1; Provisiona 33.5 2E+02 0.0044 41.0 10.4 27 297-323 33-67 (1832)
156 PF03784 Cyclotide: Cyclotide 33.1 7.9 0.00017 31.1 -1.4 11 1229-1240 2-12 (30)
157 PRK10929 putative mechanosensi 32.7 1.6E+03 0.034 31.5 18.5 13 343-355 607-619 (1109)
158 PF04142 Nuc_sug_transp: Nucle 32.5 5.4E+02 0.012 29.2 12.2 48 331-378 142-201 (244)
159 PF02535 Zip: ZIP Zinc transpo 32.4 6.8E+02 0.015 28.4 13.1 32 45-76 185-216 (317)
160 COG3610 Uncharacterized conser 32.3 2.4E+02 0.0053 30.4 8.8 80 124-206 17-102 (156)
161 PF10810 DUF2545: Protein of u 31.7 1.9E+02 0.0042 27.7 6.9 30 103-132 3-34 (80)
162 PF14342 DUF4396: Domain of un 31.5 6.2E+02 0.014 26.9 11.5 104 111-221 13-132 (139)
163 COG1457 CodB Purine-cytosine p 31.3 1.1E+03 0.025 29.4 16.5 75 57-132 226-302 (442)
164 PRK11281 hypothetical protein; 31.1 1.5E+03 0.032 31.8 17.6 13 342-354 627-639 (1113)
165 PRK10745 trkD potassium transp 29.4 1.4E+03 0.031 29.9 22.8 23 145-167 149-171 (622)
166 PF03222 Trp_Tyr_perm: Tryptop 29.3 1.1E+03 0.024 28.6 20.0 43 285-328 69-111 (394)
167 KOG1397 Ca2+/H+ antiporter VCX 29.3 5.1E+02 0.011 32.1 11.6 54 51-108 95-148 (441)
168 PRK11463 fxsA phage T7 F exclu 29.3 3.6E+02 0.0078 28.8 9.5 50 44-95 15-64 (148)
169 PRK09543 znuB high-affinity zi 28.9 9.3E+02 0.02 27.6 15.4 45 121-168 44-89 (261)
170 PRK11598 putative metal depend 28.6 7.1E+02 0.015 31.8 13.4 19 299-317 77-95 (545)
171 COG0733 Na+-dependent transpor 27.5 1.3E+03 0.029 29.0 14.9 59 392-464 332-393 (439)
172 PRK12488 acetate permease; Pro 27.2 1.4E+03 0.03 29.0 16.4 60 266-330 120-179 (549)
173 PF04224 DUF417: Protein of un 27.0 1.8E+02 0.0038 32.1 6.8 47 164-214 116-164 (175)
174 TIGR00796 livcs branched-chain 26.9 1.2E+03 0.027 28.4 17.3 64 88-151 257-321 (378)
175 KOG1278 Endosomal membrane pro 26.5 1.5E+03 0.034 29.4 17.0 226 244-484 265-557 (628)
176 TIGR00927 2A1904 K+-dependent 26.5 1.7E+02 0.0036 39.6 7.6 12 454-465 1073-1084(1096)
177 PRK11026 ftsX cell division AB 26.4 1.1E+03 0.024 27.7 14.0 63 44-107 166-229 (309)
178 COG1296 AzlC Predicted branche 26.1 1E+03 0.022 27.5 12.8 27 54-80 39-66 (238)
179 PRK11281 hypothetical protein; 26.1 2E+03 0.043 30.6 26.2 47 333-380 682-729 (1113)
180 PF11168 DUF2955: Protein of u 25.8 1.6E+02 0.0034 30.8 6.1 88 128-218 16-111 (140)
181 PRK09917 hypothetical protein; 25.5 6.9E+02 0.015 26.9 10.8 80 124-206 21-105 (157)
182 COG5522 Predicted integral mem 24.6 7.4E+02 0.016 28.4 11.0 66 408-474 161-231 (236)
183 TIGR02119 panF sodium/pantothe 24.2 1.4E+03 0.03 28.0 15.6 47 283-329 109-155 (471)
184 TIGR00930 2a30 K-Cl cotranspor 24.1 2E+03 0.043 29.9 21.7 12 281-292 143-154 (953)
185 COG1230 CzcD Co/Zn/Cd efflux s 24.0 1E+03 0.022 28.4 12.7 16 156-171 84-99 (296)
186 COG2271 UhpC Sugar phosphate p 24.0 6.7E+02 0.014 31.5 11.5 39 55-100 249-289 (448)
187 PRK11375 allantoin permease; P 23.7 1.2E+03 0.026 29.1 14.0 41 106-146 315-358 (484)
188 PF10136 SpecificRecomb: Site- 23.0 1.8E+03 0.04 29.1 18.9 32 188-219 355-389 (643)
189 KOG1277 Endosomal membrane pro 22.9 2.7E+02 0.0059 34.9 8.0 24 403-426 455-478 (593)
190 PRK09442 panF sodium/panthothe 22.9 1.5E+03 0.032 27.9 17.3 48 283-330 110-157 (483)
191 PRK12911 bifunctional preprote 22.5 2.4E+03 0.051 30.6 16.9 24 361-384 1035-1058(1403)
192 TIGR01992 PTS-IIBC-Tre PTS sys 22.3 1.6E+03 0.035 28.1 19.1 33 161-194 258-290 (462)
193 TIGR03648 Na_symport_lg probab 22.3 1.6E+03 0.036 28.2 16.4 59 266-329 85-143 (552)
194 PF03619 Solute_trans_a: Organ 22.2 5.7E+02 0.012 29.3 10.2 51 302-353 3-53 (274)
195 COG1114 BrnQ Branched-chain am 22.1 1.6E+03 0.036 28.1 15.3 62 88-149 265-327 (431)
196 TIGR00783 ccs citrate carrier 21.7 1.3E+03 0.027 28.3 13.0 33 55-87 118-154 (347)
197 PF11833 DUF3353: Protein of u 21.7 9.7E+02 0.021 26.8 11.4 38 372-416 118-155 (194)
198 TIGR00906 2A0303 cationic amin 21.6 1.7E+03 0.037 28.2 19.8 17 288-305 100-116 (557)
199 TIGR00439 ftsX putative protei 21.4 1.4E+03 0.03 27.0 13.5 62 43-105 165-227 (309)
200 PRK11021 putative transporter; 21.0 1.4E+03 0.031 27.1 14.6 36 66-103 45-80 (410)
201 PF13722 DUF4161: C-terminal d 20.6 9.9E+02 0.022 25.0 10.6 27 302-328 13-39 (127)
202 PF06664 MIG-14_Wnt-bd: Wnt-bi 20.5 1.4E+03 0.029 26.6 14.8 24 364-387 116-139 (298)
203 PRK09598 lipid A phosphoethano 20.5 9.4E+02 0.02 30.6 12.3 128 254-402 45-184 (522)
204 TIGR00837 araaP aromatic amino 20.4 1.4E+03 0.031 26.8 17.6 32 283-315 61-92 (381)
205 PF04123 DUF373: Domain of unk 20.3 9.6E+02 0.021 29.2 11.7 15 312-326 188-202 (344)
206 COG2237 Predicted membrane pro 20.2 9.6E+02 0.021 29.4 11.6 14 313-326 189-202 (364)
207 PF02322 Cyto_ox_2: Cytochrome 20.0 1.5E+03 0.033 26.9 21.3 25 58-82 3-27 (328)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-103 Score=888.47 Aligned_cols=457 Identities=30% Similarity=0.446 Sum_probs=412.9
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhc
Q 000794 17 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 96 (1281)
Q Consensus 17 ~~~~~~rklLa~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Y 96 (1281)
.++..|||+|+|+|||||||+||+||||++||+|+||++||+|||++++++++++++|+++||||+||||||||+||++|
T Consensus 20 ~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~Y 99 (503)
T KOG1291|consen 20 PPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREEY 99 (503)
T ss_pred ccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 000794 97 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSY 176 (1281)
Q Consensus 97 gk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~F 176 (1281)
|||++|.||+++|+|+|++||+||||+|+|+|+|+++|+|+||+||++|+|+|+++.+| |.||+|.++++|+..|++||
T Consensus 100 pk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~ky-GiRklE~~~~~Li~~mai~F 178 (503)
T KOG1291|consen 100 PKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKY-GIRKLEAFFAFLIVTMAISF 178 (503)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876 99999999999999999999
Q ss_pred HHHHHhhCCCccccc-ceeccccC---CChHHHHHHHhcccchhHHHHHhHhhhhhcccccccccch---hhhHHHHHHH
Q 000794 177 VLGVLISQPEIPLSV-NGMLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGA---LCHDHFFAIL 249 (1281)
Q Consensus 177 Vi~lfis~Pd~geV~-~GLvP~lp---~~sl~~aVALIGATImPhNlYLHSaLVqsR~~~~~~s~~a---~r~D~~~gil 249 (1281)
.+++..++|+.++++ +|++|+++ ++.+++++|++||+|||||+|+||++||+|+.+++..++. ..+..+.+.
T Consensus 179 ~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~- 257 (503)
T KOG1291|consen 179 GVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESA- 257 (503)
T ss_pred heeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHH-
Confidence 999999999998765 56679987 6899999999999999999999999999999887654332 222222222
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhcC-Ccccc-------------CHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHH
Q 000794 250 CIFSGIYMVNYVLMNSA-ANLFYST-GLVLL-------------TFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVN 314 (1281)
Q Consensus 250 ~v~lgsfLINlaIViVa-AavLygt-Gi~V~-------------tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTIT 314 (1281)
....++|+||.+++.++ |+.||++ +..+. ++..+..+|...+| +++.++|++|||+|||||+||
T Consensus 258 ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g-~~a~~Ifai~lLasGQSstit 336 (503)
T KOG1291|consen 258 IALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFG-PAALYIFAIGLLASGQSSTIT 336 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHCCCcccce
Confidence 23356899999999999 9988875 33332 24556677888887 999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 000794 315 WNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGV 394 (1281)
Q Consensus 315 gTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGe 394 (1281)
||||||+|||||++|++++|.||++||++||+|+++|+++.|.+++.+|++++||+++++|||+++||++|+++|+|||.
T Consensus 337 gTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~ 416 (503)
T KOG1291|consen 337 GTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGV 416 (503)
T ss_pred eeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 000794 395 HKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSR 474 (1281)
Q Consensus 395 yrnS~~~nILawli~llIi~LNIyfVv~~lfg~s~w~~~l~~~~~~~~~~~~~vl~~~~~~yl~f~lyL~~~pl~s~s~~ 474 (1281)
|+|+...+.++|.+.++++.+|+||+++.+.. + ....+..+.++.+.+++|++|.+||+.+|+...+..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~-------~----~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~~~~~ 485 (503)
T KOG1291|consen 417 FKNGLVTEELTWTVAALVLGINGYFLVSFFWS-------L----VGKHSKIVVTVNVWTLAYLAFILYLAATCLNAYSII 485 (503)
T ss_pred hccCccceeeeehheeeeeeeeeEEeeeehhh-------h----cCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999866531 1 121223455667788999999999999999999999
Q ss_pred CCCCCCccccccc
Q 000794 475 NNAPDWSWEFQRA 487 (1281)
Q Consensus 475 ~~~~~~~~~~~~~ 487 (1281)
.+++.|+++.++.
T Consensus 486 ~~~~~~~~~~~~~ 498 (503)
T KOG1291|consen 486 SLAMSSSMHAQNA 498 (503)
T ss_pred hhhcccchhcccc
Confidence 9999999999885
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=1.8e-76 Score=685.58 Aligned_cols=404 Identities=28% Similarity=0.490 Sum_probs=369.7
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhc
Q 000794 17 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 96 (1281)
Q Consensus 17 ~~~~~~rklLa~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Y 96 (1281)
.++..|+++++++|||++++++|+|||+++|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|
T Consensus 25 ~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~ 104 (439)
T PRK00701 25 SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRY 104 (439)
T ss_pred CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 000794 97 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSY 176 (1281)
Q Consensus 97 gk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~F 176 (1281)
||++++++|+.+++++++++++|++|+|+|++++||+|++++++++++++++++++. +.++|++|+++.+++++|.+||
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~-~~~y~~~E~i~~~lv~~m~l~f 183 (439)
T PRK00701 105 PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQ-RRGFRPLEAIIGGLLLVIAAAF 183 (439)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776543 3467999999999999999999
Q ss_pred HHHHHhhCCCcccccceeccc---cCC-ChHHHHHHHhcccchhHHHHHhHhhhhhcccccc--cc---cchhhhHHHHH
Q 000794 177 VLGVLISQPEIPLSVNGMLTK---FSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVN--IS---KGALCHDHFFA 247 (1281)
Q Consensus 177 Vi~lfis~Pd~geV~~GLvP~---lp~-~sl~~aVALIGATImPhNlYLHSaLVqsR~~~~~--~s---~~a~r~D~~~g 247 (1281)
++.++.++|||+++++|++|+ +|. +.++.++|++||||||||+|+||+++++|+.+.. .. .+..+.|+..+
T Consensus 184 ~~~~~~~~P~~~~v~~Gl~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~l~~~r~Dt~~g 263 (439)
T PRK00701 184 IVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRIDSAIA 263 (439)
T ss_pred HHHHheeCCCHHHHhcccCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHHHHHHHHHHHHH
Confidence 999999999999999999899 874 5678899999999999999999999988753211 11 12235566665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcc-ccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000794 248 ILCIFSGIYMVNYVLMNSAANLFYSTGLV-LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 326 (1281)
Q Consensus 248 il~v~lgsfLINlaIViVaAavLygtGi~-V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGF 326 (1281)
+ +.++++|.+|++++|++||++|.. +.+..|++++|+|.+| ++++++|++|||+|||+|++++++++++++++|
T Consensus 264 ~----~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G-~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~ 338 (439)
T PRK00701 264 L----TIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLG-AAAATLFGIALLASGLSSTVVGTLAGQIVMEGF 338 (439)
T ss_pred H----HHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHh-HHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence 4 457899999999999999998875 8899999999999998 899999999999999999999999999999999
Q ss_pred hCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHH
Q 000794 327 LRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVL 406 (1281)
Q Consensus 327 L~lri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILaw 406 (1281)
++|+.++|.|++++++++++|++++.++.+..+|+++++++||+++++|||+++|+++++|+|++||+|||+++.|+++|
T Consensus 339 l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~~~~ 418 (439)
T PRK00701 339 LRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAW 418 (439)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHHHHH
Confidence 99999999999999999999999877665434699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 000794 407 ITFMGMLGLKLIFMVEMIFG 426 (1281)
Q Consensus 407 li~llIi~LNIyfVv~~lfg 426 (1281)
+++++++++|+++++..++|
T Consensus 419 ~~~~~i~~l~~~~~~~~~~~ 438 (439)
T PRK00701 419 IIAVLIVALNIYLLYQTFTG 438 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999998864
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-73 Score=650.06 Aligned_cols=400 Identities=28% Similarity=0.434 Sum_probs=367.8
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhc
Q 000794 17 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 96 (1281)
Q Consensus 17 ~~~~~~rklLa~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Y 96 (1281)
.....||++++++||||||++||+|||||+|++|+|++|||+|+|++++++++++++|++++|+|+||||+|+|.||++|
T Consensus 8 ~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y 87 (416)
T COG1914 8 KKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERY 87 (416)
T ss_pred chHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 000794 97 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSY 176 (1281)
Q Consensus 97 gk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~F 176 (1281)
++++++++|+.++++++++|++|++|+|+|++++||+|+.++++++++++++++.+. ++|++|+++..++.++++||
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~---~~r~~E~~v~~l~~~~~i~~ 164 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK---GYRLLERVVLILGLVLVILF 164 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887653 67999999999999999999
Q ss_pred HHHHHhhCCCcccccce-eccccCC-ChHHHHHHHhcccchhHHHHHhHhhhhhcccccccccchhh---hHHHHHHHHH
Q 000794 177 VLGVLISQPEIPLSVNG-MLTKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALC---HDHFFAILCI 251 (1281)
Q Consensus 177 Vi~lfis~Pd~geV~~G-LvP~lp~-~sl~~aVALIGATImPhNlYLHSaLVqsR~~~~~~s~~a~r---~D~~~gil~v 251 (1281)
++++++++|+|++++++ ++|+.|. +.++.++|++|||||||++|+||++||++...++..+++.+ .|.++++
T Consensus 165 ~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~~i~~--- 241 (416)
T COG1914 165 VYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDTIIGM--- 241 (416)
T ss_pred HHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHHHHHH---
Confidence 99999999999999999 6798877 88999999999999999999999999973322222223333 3555443
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCc--cccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000794 252 FSGIYMVNYVLMNSAANLFYSTGL--VLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 329 (1281)
Q Consensus 252 ~lgsfLINlaIViVaAavLygtGi--~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~l 329 (1281)
...+++|.++++++|..+|.++. .+.+..++...+.+.+| ..+..+|++++++||++|++++++++|.+|++|+++
T Consensus 242 -~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G-~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~ 319 (416)
T COG1914 242 -IIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLG-SAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNW 319 (416)
T ss_pred -HHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhh-hHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhcc
Confidence 35789999999999999998763 46778899999999998 899999999999999999999999999999999999
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHH
Q 000794 330 DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITF 409 (1281)
Q Consensus 330 ri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILawli~ 409 (1281)
+.++|.|+.++|+++++|++++.++.| ++.++++++|+++++++||+++|++.++++|++||+|+|+++.++++|+++
T Consensus 320 ~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~ 397 (416)
T COG1914 320 RIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVV 397 (416)
T ss_pred cCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHH
Confidence 999999999999999999988888888 699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 000794 410 MGMLGLKLIFMVEMIFG 426 (1281)
Q Consensus 410 llIi~LNIyfVv~~lfg 426 (1281)
+++..+|+++++.++++
T Consensus 398 ~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 398 ILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998864
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=1.5e-72 Score=644.64 Aligned_cols=365 Identities=28% Similarity=0.475 Sum_probs=329.5
Q ss_pred HHHHhhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHH
Q 000794 23 YRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 102 (1281)
Q Consensus 23 rklLa~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~ 102 (1281)
|++|+++|||++++++|+|||||+|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|.||++|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000794 103 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI 182 (1281)
Q Consensus 103 ~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfi 182 (1281)
.+|+++++++++++++|++|+|+|+|++||+|+|++++++++++++++++.+ +++|++|+++.+++++|.+||++++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~-~~yr~~E~~~~~lv~~m~~~f~~~~~~ 159 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDK-PGLRILEAFVALLVTIVAICFAYELFY 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHh-CCceeHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999999998888776655433 468999999999999999999999999
Q ss_pred hCCCcccccce-eccccC---CChHHHHHHHhcccchhHHHHHhHhhhhhcccccccccc-------------------h
Q 000794 183 SQPEIPLSVNG-MLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKG-------------------A 239 (1281)
Q Consensus 183 s~Pd~geV~~G-LvP~lp---~~sl~~aVALIGATImPhNlYLHSaLVqsR~~~~~~s~~-------------------a 239 (1281)
++|||+++++| ++|++| .++++.++|++||||||||+|+||++||+|+.+++...+ .
T Consensus 160 ~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (390)
T TIGR01197 160 AKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSF 239 (390)
T ss_pred eCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHH
Confidence 99999999988 569765 467888999999999999999999999999865432111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C-ccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHH
Q 000794 240 LCHDHFFAILCIFSGIYMVNYVLMNSAANLFYST-G-LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 317 (1281)
Q Consensus 240 ~r~D~~~gil~v~lgsfLINlaIViVaAavLygt-G-i~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTl 317 (1281)
.+.|..+++ +.+.+++|.++++++|++||++ + .+..+..|++++|+|.+| ++|.++|++|||+|||+|++|+++
T Consensus 240 ~~~d~~~~i---~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~~G-~~a~~lF~igLlaAG~sS~it~~~ 315 (390)
T TIGR01197 240 SINEFVIAL---FTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFS-PAAGYIFAVGLLAAGQSSGMVGTY 315 (390)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHHhh-HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223444443 2345678999999999999975 5 567789999999999997 899999999999999999999999
Q ss_pred HHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000794 318 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM 392 (1281)
Q Consensus 318 AGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IM 392 (1281)
+||++|+||++|+.++|.|++++|+++++|+++++++.|..++.++++++||+++++|||+++|+++++|+|++|
T Consensus 316 ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999998877766567999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=4.5e-61 Score=541.51 Aligned_cols=350 Identities=28% Similarity=0.430 Sum_probs=321.4
Q ss_pred hhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 45 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIA 124 (1281)
Q Consensus 45 IaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtA 124 (1281)
|+|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|||++.+++|+.+++++++++++|++|+|
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccceec-cccCC-Ch
Q 000794 125 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGML-TKFSG-DS 202 (1281)
Q Consensus 125 IALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GLv-P~lp~-~s 202 (1281)
+|+++++|+|.+++++++++++++++++. .+++|++|+++.+++++|.+||++.+++++|||+++++|++ |++|. ++
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~-~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~ 159 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLS-SGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGS 159 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhH
Confidence 99999999999999999999999998843 23569999999999999999999999999999999999998 99998 88
Q ss_pred HHHHHHHhcccchhHHHHHhHhhhhhccccccc-----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 000794 203 AFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNI-----SKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVL 277 (1281)
Q Consensus 203 l~~aVALIGATImPhNlYLHSaLVqsR~~~~~~-----s~~a~r~D~~~gil~v~lgsfLINlaIViVaAavLygtGi~V 277 (1281)
++.++|++|||+|||++|+||+++++|+++.+. ..+..+.|+.+++ ++.+++|+++++++|.++|+.+..+
T Consensus 160 ~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~----~~~~li~~ai~i~~A~~l~~~~~~~ 235 (358)
T PF01566_consen 160 LLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGM----IVSFLINVAILIVAAAVLYPGGSEV 235 (358)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccch
Confidence 999999999999999999999999998865421 1344567777764 4578999999999999999777778
Q ss_pred cCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCc
Q 000794 278 LTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGA 357 (1281)
Q Consensus 278 ~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~~G~ 357 (1281)
.+.+|++++|+|.+|++|++++|++|+|+|+|+|+++++++++++++++++++.+.+.|+..++...++|++++++..+.
T Consensus 236 ~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (358)
T PF01566_consen 236 ETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGA 315 (358)
T ss_pred hhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999757999999999999999999999999999999999999888888888888899999888776655
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchH
Q 000794 358 EG-VYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQ 399 (1281)
Q Consensus 358 ~g-~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~ 399 (1281)
.. |+++++++||+++++||++++|+++++|||++||+|||+|
T Consensus 316 ~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 316 PGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 33 5899999999999999999999999999999999999986
No 6
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.03 E-value=4.7e-06 Score=98.75 Aligned_cols=121 Identities=12% Similarity=0.200 Sum_probs=79.6
Q ss_pred hhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHH-HHHHHH---HH-hcCCCHHHHHHhhcCch-hHHHHHHH
Q 000794 34 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQ-YLSARI---AV-VTGKDLAQICGEEYDKW-TCVFIGVQ 107 (1281)
Q Consensus 34 LvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQ-eLSARL---GV-VTGk~LAEicRe~Ygk~-~~~~LwI~ 107 (1281)
-+.+++++++.+......+..+|+...|......++++++. .++.|+ +- ..-.++.|.++++|++. .+++..+.
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~ 129 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSIS 129 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHH
Confidence 34556788888888777788888763333222222333221 123332 11 12468999999999954 45555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhc
Q 000794 108 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 154 (1281)
Q Consensus 108 aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgs 154 (1281)
..+..+.....++.|.+..++.++|+|.+.++++.++.+++...++-
T Consensus 130 ~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 130 LLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 55555566667888999999999999999999998887766666653
No 7
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=99.01 E-value=5.1e-07 Score=104.69 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHhhcCc-hhHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFA----AIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 106 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtIm----aillQeLSARLGVVTGk~LAEicRe~Ygk-~~~~~LwI 106 (1281)
|+-+.+.+++.+........+..+|+..+|..+...+. ++++...--|.+ ..++.|.++++|++ ..+.+.-+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 34455668888888888888889998877765443332 223322223334 67899999999998 45544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcc
Q 000794 107 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 107 ~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy 155 (1281)
+..+..+..-..++.|.+..++.++|+|.+.++++.++.+++...++-.
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcch
Confidence 4445555556667889999999999999999999988887777766543
No 8
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.96 E-value=6.6e-06 Score=98.69 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=82.8
Q ss_pred hhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhc-----CCCHHHHHHhhcCch---hHHHH
Q 000794 34 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFI 104 (1281)
Q Consensus 34 LvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImai-llQeLSARLGVVT-----Gk~LAEicRe~Ygk~---~~~~L 104 (1281)
-+.+.++....+......+..+|+..+|..+-..+..+ .+..++.|+-+-+ -.++.|.+++||++. .+.+.
T Consensus 50 s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~ 129 (502)
T PRK15419 50 SAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIIS 129 (502)
T ss_pred HHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHH
Confidence 34456788888888888888899888787553333222 2334566665433 247999999999953 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcc
Q 000794 105 GVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 105 wI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy 155 (1281)
.++..+..+.....++.|.+..++.++|+|.+++++++++.+++..+++-.
T Consensus 130 ~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 130 ALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 333334444444556778999999999999999999988888777776643
No 9
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.95 E-value=1.7e-07 Score=108.19 Aligned_cols=119 Identities=10% Similarity=0.225 Sum_probs=87.8
Q ss_pred hhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHhhcCchh--HHHHHHHHHHH
Q 000794 35 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWT--CVFIGVQTELS 111 (1281)
Q Consensus 35 vSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaill-QeLSARLGVVTGk~LAEicRe~Ygk~~--~~~LwI~aeLA 111 (1281)
+.+..+..+.+......+..+|+..+|..+...+..+++ -.++.|+=.....++.|.++++|++.. +++.+++..+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 445678889999999999999999998887666655444 446888887788899999999999987 55555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhh
Q 000794 112 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFA 153 (1281)
Q Consensus 112 IIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lg 153 (1281)
.+..-..++.|.+..++.++|+|...+++++++.+++..+++
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~G 138 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFG 138 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhh
Confidence 556666788899999999999999999988877766655544
No 10
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.94 E-value=2.3e-05 Score=93.77 Aligned_cols=120 Identities=10% Similarity=0.150 Sum_probs=76.4
Q ss_pred hhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhc-----CCCHHHHHHhhcCch---hHHHHHH
Q 000794 36 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIGV 106 (1281)
Q Consensus 36 SIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImail-lQeLSARLGVVT-----Gk~LAEicRe~Ygk~---~~~~LwI 106 (1281)
++.++....+......+..+|+.-+|..+-..+..++ .-.++.|+-..+ -.++.|.+++|||+. .+.+..+
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai 127 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISAL 127 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHH
Confidence 3445555556666666677888777775422222222 223455555433 346999999999953 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcc
Q 000794 107 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 107 ~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy 155 (1281)
+..+..+..-..++.|.+..++.++|+|.+.+++++++.+.+...++-.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 128 IILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhhH
Confidence 3334444445566778899999999999999999988887777766543
No 11
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.92 E-value=3.1e-05 Score=92.33 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred hhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCCHHHHHHhhcCchh-HHHHHHH
Q 000794 37 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--------FCQYLSARIAVVTGKDLAQICGEEYDKWT-CVFIGVQ 107 (1281)
Q Consensus 37 IAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImai--------llQeLSARLGVVTGk~LAEicRe~Ygk~~-~~~LwI~ 107 (1281)
+.+++.+.+.........+|+...|..+...+..+ .+..+.-|.+ ..+..|.++++|++.. +++..+.
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~l~~Ryg~~~~~~~~~i~ 130 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN---AVTLNDMLRARYQSRLLVWLASLS 130 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHhCChHHHHHHHHH
Confidence 45677777777777777777765554433222222 2222233333 4678999999999653 4444343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcc
Q 000794 108 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 108 aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy 155 (1281)
..+..+..-..++.|.+..++.++|+|.+++++++++.+++...++-.
T Consensus 131 ~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 131 LLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccH
Confidence 444444455567889999999999999999999988877776666543
No 12
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.87 E-value=3.9e-05 Score=93.34 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=89.0
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHhhcC-chhHHHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--FCQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 108 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImai--llQeLSARLGVVTGk~LAEicRe~Yg-k~~~~~LwI~a 108 (1281)
|+-+++.+++...+......+..+|+.-+|..+ ..++++ ++-.++.|+--..-.++.|.+.+||+ |..+++..+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445566678888888888888889998877653 333333 22334666655455789999999997 55676655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcc
Q 000794 109 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 109 eLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy 155 (1281)
.+..+..-..++.|.+..++.++|+|.+++++++++.+.+...++-.
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm 200 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGM 200 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 55555556677889999999999999999999998888777776643
No 13
>PRK12488 acetate permease; Provisional
Probab=98.87 E-value=1.6e-05 Score=96.60 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=92.7
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHhhcC-chhHHHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC--QYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 108 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaill--QeLSARLGVVTGk~LAEicRe~Yg-k~~~~~LwI~a 108 (1281)
|+.+++.++..+.+......+..+|+.-+|..+ +..+++++ ..++.|+=-..-.++.|.+.+||+ |..+++..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 455666778888888888888899998877654 33333322 334555544445789999999998 56777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchh
Q 000794 109 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 157 (1281)
Q Consensus 109 eLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g 157 (1281)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+.+..+++-.++
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhH
Confidence 6666666777888999999999999999999998888877777764433
No 14
>PRK09395 actP acetate permease; Provisional
Probab=98.85 E-value=1.6e-05 Score=96.54 Aligned_cols=125 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHhhcC-chhHHHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--CQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 108 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImail--lQeLSARLGVVTGk~LAEicRe~Yg-k~~~~~LwI~a 108 (1281)
|+-+.+.++.++.+......+..+|+.-+|..+- ..++++ .-.++.|+=-..-.+..|.+++||+ |..+++..+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 4556667788888888888888889887665443 223221 2234566655455789999999999 55776665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchh
Q 000794 109 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 157 (1281)
Q Consensus 109 eLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g 157 (1281)
.+..+..-..+++|.+..++.++|+|.+.+++++++.+.+..+++-.+.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 5666666677888999999999999999999999988888777764433
No 15
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.81 E-value=2.3e-05 Score=91.86 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=99.0
Q ss_pred hhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHhhcCchhHHHH
Q 000794 27 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT--GKDLAQICGEEYDKWTCVFI 104 (1281)
Q Consensus 27 a~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVT--Gk~LAEicRe~Ygk~~~~~L 104 (1281)
+.+|=.+++....+|+|=+.-=.++|...-.-.+++++++-++++.-+.+-+++-.-+ |.++.+.+++++||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 4567777888888999999888876654445555566666667777777777777765 78899999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------CCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 000794 105 GVQTELSVILLDLTMVLGIAHGLNLLM------GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVL 178 (1281)
Q Consensus 105 wI~aeLAIIasDIaEVIGtAIALnLLf------GiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi 178 (1281)
|+...+..-+.-++-+.|.+--+.-++ ++|.+++.++..+..-.+++++. +.+.++..+++..|+++|+.
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~----~~v~~~n~~lv~~~i~~~~~ 159 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT----KAVDRINRVLVFGMIISFII 159 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Confidence 655433333322232334333333333 34556655554443333444443 34455555566677777776
Q ss_pred HHHhhCCCcc
Q 000794 179 GVLISQPEIP 188 (1281)
Q Consensus 179 ~lfis~Pd~g 188 (1281)
..+..-|.|.
T Consensus 160 l~~~~~p~~~ 169 (394)
T PF03222_consen 160 LVVYLIPHWN 169 (394)
T ss_pred HHHHHhhhcC
Confidence 6666667664
No 16
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.72 E-value=4.7e-05 Score=89.81 Aligned_cols=341 Identities=14% Similarity=0.093 Sum_probs=161.1
Q ss_pred hhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHh--cCCCHHHHHHhhcCchhHHH
Q 000794 27 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF-AAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 27 a~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtI-maillQeLSARLGVV--TGk~LAEicRe~Ygk~~~~~ 103 (1281)
+.+|=.+++....+|+|=+.==.++|...-+-.+-+++++-+ |.+.-.. -+|.-.- -|.++-.+.++.+||.+.++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 568888999999999999998888886433333333333333 3333232 3343222 36789999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhh--CCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 000794 104 IGVQTELSVILLDLTMVLGI----AHGLNLLM--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYV 177 (1281)
Q Consensus 104 LwI~aeLAIIasDIaEVIGt----AIALnLLf--GiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FV 177 (1281)
.|+...+...+.-.+=+.|. .-.+.-.+ ++|.+.+.++..+..-++++++ .+.+.++..+++..|.++|+
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g----~~~v~~~n~~L~~~~ii~~~ 158 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG----TSSVDLFNRFLFSAKIIFLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHH
Confidence 66554333322222222231 11122123 3466666555444443444443 34555566666667777777
Q ss_pred HHHHhhCCCcccccceecc-ccCCChHHHH----HHHhcc-cchhHHHHHhHhhhhhcccccccccchhhhHHHHHHHHH
Q 000794 178 LGVLISQPEIPLSVNGMLT-KFSGDSAFSI----MSLLGA-SMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCI 251 (1281)
Q Consensus 178 i~lfis~Pd~geV~~GLvP-~lp~~sl~~a----VALIGA-TImPhNlYLHSaLVqsR~~~~~~s~~a~r~D~~~gil~v 251 (1281)
......-|+|... .+.. +...+.++.+ +--+|- .++|- +++-.+.+ .+++++-.+.+.+..
T Consensus 159 ~~~~~l~p~~~~~--~L~~~~~~~~~~~~~iPvl~~SFgfh~iIps-------l~~y~~~~----~~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 159 VMLALMMPHIHKV--NLLTLPLQQGLALSAIPVIFTSFGFHGSVPS-------IVSYMGGN----IRKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHhcCHH--HHhcCCccccHHHHHHHHHHHHhhCCcccHH-------HHHHhCcC----HHHHHHHHHHHHHHH
Confidence 6666666777521 1111 1111222222 222221 12222 22111111 122333222222111
Q ss_pred HHH-HHHHHHHHHHHHHHhhhcCCccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000794 252 FSG-IYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 330 (1281)
Q Consensus 252 ~lg-sfLINlaIViVaAavLygtGi~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lr 330 (1281)
++. .+.+-.++-.+.+..+...-.+-.+..+..+.+...+++++...+..+-.+.|-.+|-+..+++-.--+.+.++++
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~ 305 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR 305 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 100 1111111111222222110001112334455667767766665554444445656666766666433333344444
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000794 331 IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 389 (1281)
Q Consensus 331 i~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR 389 (1281)
.+... |..+.++..+|.++++++. -+.....+.++.++.++ =+.++|.+..-..|
T Consensus 306 ~~~~~-r~~~~~l~flppli~a~~~-P~~F~~al~~aG~~~ai--l~~ilP~~m~~~~r 360 (403)
T PRK15132 306 NTVGG-RLQTGLITFLPPLAFALFY-PRGFVMALGYAGVALAV--LALLLPSLLVWQSR 360 (403)
T ss_pred ccccC-CchhehhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 33333 4445566777888776642 22344455555554332 23355555444434
No 17
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.62 E-value=0.00018 Score=85.70 Aligned_cols=328 Identities=11% Similarity=0.021 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHH
Q 000794 58 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELST 137 (1281)
Q Consensus 58 ~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~ 137 (1281)
+-++.+++.++++-++-...+-.|..||..=...-|..+|.+..++.-+...+..++--.-+++=.+.+.....|+|.|+
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 34778899999999998899999999999988888999998887665555555555544334443344333335789999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hCC-CcccccceeccccCCChHHHHHHHhcccch
Q 000794 138 CVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI-SQP-EIPLSVNGMLTKFSGDSAFSIMSLLGASMM 215 (1281)
Q Consensus 138 GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfi-s~P-d~geV~~GLvP~lp~~sl~~aVALIGATIm 215 (1281)
++++.++.+.+..+++ |+..+++|++... ++.+.|++.... .++ +..+....-.|.-+. ++..++++.=+..+
T Consensus 133 ~ili~g~l~~l~~ifG-~r~l~~l~~~a~~---~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~-~fl~a~slv~g~~~ 207 (442)
T COG1457 133 GILIIGVLMTLVTIFG-YRALHKLERIAVP---LLLLLFLYLLALLFRSKGGLDALWVKGPTSPL-SFLSALSLVIGSFA 207 (442)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccceeeccCCCcch-hHHHHHHHHHHHHH
Confidence 9999998888887776 4455666665443 334444443332 232 222222111132222 23333333222233
Q ss_pred hHHHHHhHhhhhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCHHHHHHHHHHhhcchh
Q 000794 216 PHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPV 295 (1281)
Q Consensus 216 PhNlYLHSaLVqsR~~~~~~s~~a~r~D~~~gil~v~lgsfLINlaIViVaAavLygtGi~V~tl~dAa~lLepvLGg~~ 295 (1281)
-+-.|. +-.. |-.+++ +. +|.++. .+.+.++-+.++++++|..--..|... . +.+ ....+|+ +
T Consensus 208 sw~~~~-aDys--Ry~~~~---t~--~~~~~~---~~~G~~l~~~~~~ilGa~~a~a~g~~~-~---~~~-~~~~~G~-~ 270 (442)
T COG1457 208 SWGPYA-ADYS--RYAPSP---TP--SKAFLA---AVLGFFLGTSFMMILGAALAAAAGNAD-S---IAD-VMLGLGG-F 270 (442)
T ss_pred hhhhhh-hhhh--hhcCCC---ch--HHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-h---HHH-HHHhccc-H
Confidence 232222 1111 111111 11 233333 235667777888888876643344332 1 222 2233553 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 000794 296 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIML 375 (1281)
Q Consensus 296 A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~L 375 (1281)
+ ..-.+++..+..++.....|++..-+..... +.+++.+.+++.+ . +.+++.+++... ......|...+....-
T Consensus 271 g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~-~l~k~~~~v~~~v-~-igt~la~~~~~f--~~~f~~Fl~~i~~~i~ 344 (442)
T COG1457 271 G-LPAILILVLGTVTTNANNLYSAGLSFANIIP-KLSKVTRVVIAGV-G-IGTLLALAGPFF--YNFFENFLLLLGYFIP 344 (442)
T ss_pred H-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh-hhhhHHHHHHHHH-H-HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2 2222444445555555566766555544432 1334444333333 1 233222222111 3455667777888888
Q ss_pred HHHHHHHH-HHHhccc-----cccCCCchHHHHHHHHHHHHHHH
Q 000794 376 PSSVIPLF-RVASSRQ-----IMGVHKISQYHEFLVLITFMGML 413 (1281)
Q Consensus 376 PFaLIPLL-~LtNsR~-----IMGeyrnS~~~nILawli~llIi 413 (1281)
|...|-+- ++..+|. +...++.-.+.-..+|++.+++-
T Consensus 345 P~~~I~iad~~~~rr~~~~~~~~~~~~~~~~~g~~aw~~~~iv~ 388 (442)
T COG1457 345 PWGGVMIADYFIVRRRYSAYNIDDWEKGENLPGGVAWIAGLIVG 388 (442)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchHHHHHHHHHH
Confidence 88887765 3444433 33333222333445666555544
No 18
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.58 E-value=0.0007 Score=82.59 Aligned_cols=120 Identities=12% Similarity=0.208 Sum_probs=83.4
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCc-hhHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLV----FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 106 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLL----AtImaillQeLSARLGVVTGk~LAEicRe~Ygk-~~~~~LwI 106 (1281)
|+-+.+.++....+......+..+||..+|..+- ..++++++-..--|+|+ .++.|.+.+||++ ..+++..+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 3445556677777777777778888877666531 12233444444455554 4789999999984 45655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhc
Q 000794 107 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 154 (1281)
Q Consensus 107 ~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgs 154 (1281)
+..++.+..-..++.|.+..++.++|+|.+.++++.++.+.+...++-
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG 164 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGG 164 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 555555555566777999999999999999999998888777776653
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=98.56 E-value=0.0015 Score=77.63 Aligned_cols=129 Identities=11% Similarity=0.063 Sum_probs=60.9
Q ss_pred CCCCCcchhhhhccCCC-Cch--hHHHHHhhhhhHHhhhhh-cccCChhhHHHHhHHhhhhHHHHHHH----HHHHHHHH
Q 000794 1 MQSHSTNMDAELANSNY-QSG--VLYRLVPAVLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALML----VFNFAAIF 72 (1281)
Q Consensus 1 ~~~~~~~me~~~~s~~~-~~~--~~rklLa~lGPGfLvSIA-yIDPGnIaT~lQAGA~fGY~LLWVLL----LAtImail 72 (1281)
|...+++.|++-....+ .++ +.+. +..+|=|-++..| ++.||..... +|. ..+|..+ +..++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~r~l~~~~-~~~i~ig~~IGsGif~~~g~~~~~--aGp----~~~l~~li~~~~~~~~~~~ 73 (458)
T PRK10249 1 MKNASTVSEDTASNQEPTLHRGLHNRH-IQLIALGGAIGTGLFLGIGPAIQM--AGP----AVLLGYGVAGIIAFLIMRQ 73 (458)
T ss_pred CCCccccchhhccCCchhhhccCcHhH-hhhhhhhcccchhHHHHHHHHHHh--cCc----HHHHHHHHHHHHHHHHHHH
Confidence 44555666666433321 111 1111 2234444444444 4666665543 332 2223333 33344455
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CchHHH
Q 000794 73 CQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTC 138 (1281)
Q Consensus 73 lQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfG-iPL~~G 138 (1281)
+.||+.++=. +| +.....++.+|+.+.++......++.+.....|+.+.+.-++.+++ .|.|..
T Consensus 74 ~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 138 (458)
T PRK10249 74 LGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIW 138 (458)
T ss_pred HHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHH
Confidence 5666665544 45 6777888899987765432112222222333455555444444443 455543
No 20
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.54 E-value=0.00033 Score=83.63 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=94.4
Q ss_pred HhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHhhcCchhHHHHHHHHH
Q 000794 33 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT---GKDLAQICGEEYDKWTCVFIGVQTE 109 (1281)
Q Consensus 33 fLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVT---Gk~LAEicRe~Ygk~~~~~LwI~ae 109 (1281)
+.+....+|+|=+.==+++|...-+-++-+++++-+++++...+-+|.-.-. |.++.+..++++||.+.++.|+...
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 3445557999999999999976666666666666666666666666665544 6789999999999988877655433
Q ss_pred ---HHHHHHHH---HHHHHHHHHHHHhhCC---chHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 110 ---LSVILLDL---TMVLGIAHGLNLLMGV---ELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGV 180 (1281)
Q Consensus 110 ---LAIIasDI---aEVIGtAIALnLLfGi---PL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~l 180 (1281)
..++...+ ++.+..-+ .| .+|+ |.++..++.++....++++ |.+.+.++...|+..++++|+...
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl-~~-ql~~~~~~r~l~slifv~~l~~iv~~----G~~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFW-EN-QLGFAPLNRGFVALFLLLLMAFVIWF----GKDLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh-hcCcCCccHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 22221111 11 1343 5555444433333333333 446667777777888888888777
Q ss_pred HhhCCCcc
Q 000794 181 LISQPEIP 188 (1281)
Q Consensus 181 fis~Pd~g 188 (1281)
+..-|.|.
T Consensus 180 ~~LiP~w~ 187 (443)
T PRK13629 180 LSLIPYWN 187 (443)
T ss_pred HHHHHHcC
Confidence 77778886
No 21
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.53 E-value=0.0011 Score=80.13 Aligned_cols=129 Identities=13% Similarity=0.176 Sum_probs=87.0
Q ss_pred hcccCChhhHHHHhHH--hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhc----CCCHHHHHHhhcC-chhHHHHHHHHH
Q 000794 38 GYVDPGKWAVIIEGGA--HFGFDLVALMLVFNFAAI-FCQYLSARIAVVT----GKDLAQICGEEYD-KWTCVFIGVQTE 109 (1281)
Q Consensus 38 AyIDPGnIaT~lQAGA--~fGY~LLWVLLLAtImai-llQeLSARLGVVT----Gk~LAEicRe~Yg-k~~~~~LwI~ae 109 (1281)
+..+-+.|.---..|. ..|+.-+|..+...+..+ ..-.++.|+=..+ -.++.|.+++||+ +..+.+.-+...
T Consensus 50 ~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~i 129 (493)
T COG0591 50 AASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIII 129 (493)
T ss_pred HHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444 448888998777543333 3344566666666 6679999999999 777766555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000794 110 LSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWI 166 (1281)
Q Consensus 110 LAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~ 166 (1281)
+..+..-..++.|.+..++.++|++.+.++++.++.+.+..+++-.+..-.-+.+-.
T Consensus 130 v~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg 186 (493)
T COG0591 130 VFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDFIQG 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 555555556777999889999999999998887777777777765544444454433
No 22
>PRK15049 L-asparagine permease; Provisional
Probab=98.52 E-value=0.0043 Score=74.94 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000794 286 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 286 lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vm 323 (1281)
+++. .|.+++..++.++++.+.+++..+..++...++
T Consensus 294 ~~~~-~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 294 FFSK-LGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred HHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 455777778788888888888877777664444
No 23
>PRK10484 putative transporter; Provisional
Probab=98.50 E-value=0.0043 Score=75.36 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=58.7
Q ss_pred HhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHH
Q 000794 33 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 111 (1281)
Q Consensus 33 fLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImai-llQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLA 111 (1281)
+-+.+.++..+.+......+..+|+..+|..+...+..+ +.-.++.|+--.--.+..|.+.+||++..+.++.++..+.
T Consensus 47 ~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~ 126 (523)
T PRK10484 47 GSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIG 126 (523)
T ss_pred HHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHH
Confidence 334455688888888888888888776533222222211 1112344443322357899999999987654433322222
Q ss_pred HHHHHHHH-HHHHHHHHHH------hhCCchHHHHHHH
Q 000794 112 VILLDLTM-VLGIAHGLNL------LMGVELSTCVFLA 142 (1281)
Q Consensus 112 IIasDIaE-VIGtAIALnL------LfGiPL~~GVLIT 142 (1281)
.+...++. +.+.+++++. ++|+|..+++.++
T Consensus 127 ~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 127 YVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 22222222 2233444433 4688877766554
No 24
>PRK10483 tryptophan permease; Provisional
Probab=98.49 E-value=0.00017 Score=85.49 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=89.0
Q ss_pred HHhhhhhHHhhhhhcccCChhhHHHH-hHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHhhcCchh
Q 000794 25 LVPAVLPVLLISIGYVDPGKWAVIIE-GGAHFGFDLVALMLVFNFA---AIFCQYLSARIAVVTGKDLAQICGEEYDKWT 100 (1281)
Q Consensus 25 lLa~lGPGfLvSIAyIDPGnIaT~lQ-AGA~fGY~LLWVLLLAtIm---aillQeLSARLGVVTGk~LAEicRe~Ygk~~ 100 (1281)
-.+.+|=.+|++...+|+|=++--.. +|+-|.+.++-.++.-.+| ++++-|..-+.. -|.++..+.++..||.+
T Consensus 10 ~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 10 SPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGW 87 (414)
T ss_pred CCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHH
Confidence 35678888999999999998865433 3334444433332222222 234555555543 47789999999999988
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh-----CCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 000794 101 CVFIGVQ---TELSVILLDLTMVLGIAHGLNLLM-----GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGII 172 (1281)
Q Consensus 101 ~~~LwI~---aeLAIIasDIaEVIGtAIALnLLf-----GiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM 172 (1281)
.++.|+. ...+.+.+.+. |.+--++-++ ++|.+++.++..+..-.+++.+. +.++++..++++.|
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt----~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST----KAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 8775543 33444444444 3332222232 45878777666655555555543 44444455556667
Q ss_pred HHHHHHHHHhhCCC
Q 000794 173 LLSYVLGVLISQPE 186 (1281)
Q Consensus 173 ~L~FVi~lfis~Pd 186 (1281)
.++|++.+...-|+
T Consensus 161 i~~f~~~~~~l~~~ 174 (414)
T PRK10483 161 VITFFLTFGSLLGH 174 (414)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777655544443
No 25
>PRK11017 codB cytosine permease; Provisional
Probab=98.45 E-value=0.002 Score=75.92 Aligned_cols=107 Identities=9% Similarity=0.054 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCchH
Q 000794 58 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL-LDLTMVLGIAHGLNLLMGVELS 136 (1281)
Q Consensus 58 ~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIa-sDIaEVIGtAIALnLLfGiPL~ 136 (1281)
+-++.+++++++..++--+.++.|..+|.+-...+|..||.+...+..++-.+..++ .-++..++ +.+++-++|++..
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCCHH
Confidence 456778888888888999999999999999999999999987665543333232222 23343342 3445557788776
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000794 137 TCVFLAAADAILFPFFAGQLENYKAKLLWI 166 (1281)
Q Consensus 137 ~GVLITavdt~lLL~lgsy~g~RKlE~L~~ 166 (1281)
.++++.++...++.+++ ++..++++++..
T Consensus 122 ~~~~i~~~l~~~~~~~G-~~~i~~~~~~~~ 150 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFG-ISALTILSRIAV 150 (404)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 66666666555555544 345556665543
No 26
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.36 E-value=0.00041 Score=81.77 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhc-CCCHHHHHHhhcCchhHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 000794 60 VALMLVFNFAAIFCQYLSAR------IAVVT-GKDLAQICGEEYDKWTCVFIGVQTELSVI------LLDLTMVLGIAHG 126 (1281)
Q Consensus 60 LWVLLLAtImaillQeLSAR------LGVVT-Gk~LAEicRe~Ygk~~~~~LwI~aeLAII------asDIaEVIGtAIA 126 (1281)
.|..+++.++++++-.+++| +.--. ++++.|..++.+||++..++++.-.+... +..+++.++.-+.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666 34444 78999999999999987665433222211 2222233322222
Q ss_pred HHHhhCCchHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 000794 127 LNLLMGVELST-CVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEI 187 (1281)
Q Consensus 127 LnLLfGiPL~~-GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfis~Pd~ 187 (1281)
-.++...|.++ ..++..+....+. +.|.+.+.++..+++..+.+.+++..+..-|.|
T Consensus 113 ~~~~~~~p~~~i~~lilv~il~~iv----~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 NQLGTAPPLRGLLSLALILILVAIM----SFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11222344442 2222222111222 235566666555555455555555555445655
No 27
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.34 E-value=0.00057 Score=78.60 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhc
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTS 355 (1281)
Q Consensus 283 Aa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~~ 355 (1281)
....+...+|+++...+..++.+.|-.+|.+.+.++-.--+.+.++++.+. .+|....+++.+|.++++.+.
T Consensus 255 l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 255 LVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 344556667766677777777777777777777776433344444543222 223344455666777666543
No 28
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.34 E-value=0.0028 Score=75.33 Aligned_cols=112 Identities=7% Similarity=0.056 Sum_probs=56.6
Q ss_pred hhhhHHhhhhh-cccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHH
Q 000794 28 AVLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGV 106 (1281)
Q Consensus 28 ~lGPGfLvSIA-yIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI 106 (1281)
.+|=|-++..+ ++.||......-.++-++| +..-++..++++.+-|++.++=. +| +...-.++.||+...++...
T Consensus 21 ~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~g~~~gf~~Gw 96 (456)
T PRK10238 21 LIALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYWGSFAGFASGW 96 (456)
T ss_pred HHHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHcCcHHHHHHHH
Confidence 34444444444 4677776664422333332 22222333344455567776654 44 66777778899987765422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-CchHHHHHHHH
Q 000794 107 QTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAA 143 (1281)
Q Consensus 107 ~aeLAIIasDIaEVIGtAIALnLLfG-iPL~~GVLITa 143 (1281)
...++.+.....+..+.+.-++..++ .|.|...++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~ 134 (456)
T PRK10238 97 NYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFF 134 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 22222223333444444444555553 46665544433
No 29
>PRK11375 allantoin permease; Provisional
Probab=98.34 E-value=0.0051 Score=74.35 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHH
Q 000794 57 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 104 (1281)
Q Consensus 57 Y~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~L 104 (1281)
++.++.+++++++..++-.+.++.|..+|.+..-.+|..||.....+.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~ 107 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP 107 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence 456778888889899999999999999999999999999997765443
No 30
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.33 E-value=0.0014 Score=77.86 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=83.8
Q ss_pred hhhhhHHhhhhhcccCChhhHHHH-hHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHH
Q 000794 27 PAVLPVLLISIGYVDPGKWAVIIE-GGAHFGFDLVALMLVFNFA---AIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 102 (1281)
Q Consensus 27 a~lGPGfLvSIAyIDPGnIaT~lQ-AGA~fGY~LLWVLLLAtIm---aillQeLSARLGVVTGk~LAEicRe~Ygk~~~~ 102 (1281)
+.+|=.+|++...+|+|=++=-.. +|+-|-+.++-.++.-.+| ++++-|...+.. .|.++..+.++..||.+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 778877888888999998765432 3333333332222222222 334555555553 5888999999999998888
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHh----h--CCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 000794 103 FIGVQT---ELSVILLDLTMVLGIAHGLNLL----M--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIIL 173 (1281)
Q Consensus 103 ~LwI~a---eLAIIasDIaEVIGtAIALnLL----f--GiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~ 173 (1281)
+.|+.. ..+...+.+. |.+--++-+ + ++|.+++.++..+..-.+++.+. +.++++..++++.|.
T Consensus 88 i~~~~~~fl~Y~Ll~AYis---ggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt----~~vd~~nr~l~~~~i 160 (415)
T PRK09664 88 ISGITVAFVLYILTYAYIS---ANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS----LAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHH
Confidence 776543 3444444443 222222222 2 34665544443443334445443 344444444556777
Q ss_pred HHHHHHHHhhCCCc
Q 000794 174 LSYVLGVLISQPEI 187 (1281)
Q Consensus 174 L~FVi~lfis~Pd~ 187 (1281)
++|++.+...-|+.
T Consensus 161 i~f~~~~~~l~~~i 174 (415)
T PRK09664 161 ISFVIVFGSFFFQV 174 (415)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777665544543
No 31
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.31 E-value=0.0005 Score=81.61 Aligned_cols=276 Identities=13% Similarity=0.152 Sum_probs=139.3
Q ss_pred hhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------HHHHHHhhcCchh-HHHHH
Q 000794 36 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD---------LAQICGEEYDKWT-CVFIG 105 (1281)
Q Consensus 36 SIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~---------LAEicRe~Ygk~~-~~~Lw 105 (1281)
-++-+|+|||+--+.|=+.-|-.-+..+.++.++++...+.-+-||+...+. .+--+++..++.+ .+++-
T Consensus 29 la~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fa 108 (416)
T PF01235_consen 29 LAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFA 108 (416)
T ss_pred HHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHH
Confidence 3457999999988888777788888888888888888887777777765432 4445555454332 22221
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 000794 106 VQTELSV-ILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI-- 182 (1281)
Q Consensus 106 I~aeLAI-IasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfi-- 182 (1281)
+++.++. +...+.+.--++.+++.-||+|.|+..++.++.+.+++ ++ |.+++-++...++=+|.+.|++..+.
T Consensus 109 i~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~vi-~G---GikrI~~v~~~lVP~Ma~~Yi~~~l~ii 184 (416)
T PF01235_consen 109 IFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALVI-FG---GIKRIAKVSEKLVPFMAILYILGGLIII 184 (416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-Hc---chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 11133334455667777789976654444444343333 33 56666666666666777777655543
Q ss_pred -hC-CCcccccceecc-ccCCChHHHHHHHhcccchhHHHH-HhHhhh------------hhcccccccccchhhhHHHH
Q 000794 183 -SQ-PEIPLSVNGMLT-KFSGDSAFSIMSLLGASMMPHNFY-LHSSIV------------RRHQGQVNISKGALCHDHFF 246 (1281)
Q Consensus 183 -s~-Pd~geV~~GLvP-~lp~~sl~~aVALIGATImPhNlY-LHSaLV------------qsR~~~~~~s~~a~r~D~~~ 246 (1281)
.+ .+.++++.-.+- -+..++ ..-|.+|++++--.-+ +.-++- ..--..++..++. +.
T Consensus 185 ~~n~~~ip~~~~~If~~AF~~~a--a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QG-----l~ 257 (416)
T PF01235_consen 185 IINIDQIPAAFSLIFSSAFTPKA--AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQG-----LV 257 (416)
T ss_pred HhhhhhHHHHHHHHHHHHcCCcc--chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHe-----ee
Confidence 22 233333322111 011111 1235555555321111 000000 0000000000111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC-----ccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000794 247 AILCIFSGIYMVNYVLMNSAANLFYSTG-----LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 321 (1281)
Q Consensus 247 gil~v~lgsfLINlaIViVaAavLygtG-----i~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~ 321 (1281)
++ +..|+=++.|..+.|.++--+| ......+=...+++..+| +|+.++.+++++.-+++|.+++.+-++.
T Consensus 258 ~~----~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g-~~g~~~v~i~l~lFafTTilg~~~yge~ 332 (416)
T PF01235_consen 258 QM----FEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLG-SWGPYFVAIALFLFAFTTILGWYYYGEK 332 (416)
T ss_pred ee----ehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111111212212222221122 112222223446788787 8999999999999999999999888877
Q ss_pred HHHhhh
Q 000794 322 VLQDFL 327 (1281)
Q Consensus 322 VmeGFL 327 (1281)
..+-.+
T Consensus 333 ~~~yl~ 338 (416)
T PF01235_consen 333 CAEYLF 338 (416)
T ss_pred HHHHHc
Confidence 666655
No 32
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.30 E-value=0.021 Score=68.21 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=27.9
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000794 284 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 325 (1281)
Q Consensus 284 a~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeG 325 (1281)
..+++. +|++++..++.++++.+.+++..++.+++..++-+
T Consensus 278 ~~~~~~-~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a 318 (471)
T PRK11387 278 VLVFEK-VGIPYAADIFNFVILTAILSAANSGLYASGRMLWS 318 (471)
T ss_pred HHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344555 45678888888888888888877777765544433
No 33
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.26 E-value=0.016 Score=69.31 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000794 285 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 285 ~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vm 323 (1281)
.+.+..+| +++..++.++++.+.+++..+...++..++
T Consensus 272 ~~~~~~~g-~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 272 AVLEMIVG-KWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred HHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455565 677778888888888888777766654443
No 34
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.20 E-value=0.032 Score=66.09 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=38.3
Q ss_pred hhhHHhhhhh-cccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHH
Q 000794 29 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 104 (1281)
Q Consensus 29 lGPGfLvSIA-yIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~L 104 (1281)
++=|-++..+ ++.||......-.++-.+ .+...++..++++.+-||+.++-. +| +..+..++.||+++.++.
T Consensus 22 i~ig~~IGsGif~~~g~~~~~~G~~~~i~--~~i~~v~~~~~a~~~aEl~s~~P~-~G-g~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 22 LSIAGVIGAGLFVGSGSAIASAGPAALLA--YLLAGLLVVFIMRMLGEMAVANPD-TG-SFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHhhhhhchHHHhhHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 4444444333 456665554322111111 122233344556667777776643 23 678888899999876653
No 35
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.20 E-value=0.024 Score=67.82 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=21.4
Q ss_pred hcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000794 291 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 291 LGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vm 323 (1281)
.|+++...++.++++.+.+++.....++...++
T Consensus 289 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 289 VGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777766666654444
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.17 E-value=0.037 Score=65.82 Aligned_cols=68 Identities=7% Similarity=0.056 Sum_probs=37.5
Q ss_pred hhhHHhhhhh-cccCChhhHHHHhHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 29 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 29 lGPGfLvSIA-yIDPGnIaT~lQAGA~fGY~LLWVLLLA----tImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
+|=|-++..| ++.||..... +|. ..+|..+++ .++++.+.||+.++-. +| +.....++.+|+.+.++
T Consensus 19 i~vg~~IG~Gif~~~g~~~~~--aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G-g~y~y~~~~~G~~~gf~ 90 (457)
T PRK10580 19 MALGSAIGTGLFYGSADAIKM--AGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPA-AS-SFSRYAQENLGPLAGYI 90 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHcCcHHHHH
Confidence 4444444443 4666665442 343 223333333 3445566777776543 23 56667788899987655
Q ss_pred H
Q 000794 104 I 104 (1281)
Q Consensus 104 L 104 (1281)
.
T Consensus 91 ~ 91 (457)
T PRK10580 91 T 91 (457)
T ss_pred H
Confidence 3
No 37
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.17 E-value=0.024 Score=66.68 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh----
Q 000794 57 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL-LDLTMVLGIAHGLNLLM---- 131 (1281)
Q Consensus 57 Y~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIa-sDIaEVIGtAIALnLLf---- 131 (1281)
++-+..+++++++..++--+.++.|..||.+-.-..|..||++.+.+..++-.+..++ .-++-++| +.+++.++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~g-g~~l~~~~~~~~ 107 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVG-AKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 5667788888999999999999999999999999999999988776544443333333 23333333 22333333
Q ss_pred CC-chHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000794 132 GV-ELSTCVFLAAADAILFPFFAGQLENYKAKLLW 165 (1281)
Q Consensus 132 Gi-PL~~GVLITavdt~lLL~lgsy~g~RKlE~L~ 165 (1281)
|. +...++++.++..+++.+++ ++..++++++.
T Consensus 108 ~~~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~ 141 (386)
T TIGR02358 108 GEESPMLWILIVGILVTLWLLSG-PLAFVWLNNWS 141 (386)
T ss_pred CCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33 34445555454444443332 23334444443
No 38
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.15 E-value=0.012 Score=70.59 Aligned_cols=337 Identities=11% Similarity=0.076 Sum_probs=160.2
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 111 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLA 111 (1281)
|+.+=.-+.|+||++==..-|.+.|-+.+|.++-..+.++.+=.++.=--..+|.++.+.- ++-||+...++.+.+-++
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~~~~~l~-~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGGGIEDLA-SRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-cccCcHHHHHHHHHHHHH
Confidence 4455566899999999999999999999998888888888777666444444555665554 567888877776555444
Q ss_pred HHH-HHHHH--HHHHHHHHHHhhC----CchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 000794 112 VIL-LDLTM--VLGIAHGLNLLMG----VELSTCVFLAAADAILFPFFAGQLENYKAKLLWI-CTAGIILLSYVLGVLIS 183 (1281)
Q Consensus 112 IIa-sDIaE--VIGtAIALnLLfG----iPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~-~LI~lM~L~FVi~lfis 183 (1281)
+-- .-+.= ...-.+++.-+++ +++++-.++....++.+.+ ...+..+++-++.. +|+.++++.++.. +.
T Consensus 88 IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~-~p~kivd~iGk~LTP~LL~~l~ilii~~--i~ 164 (427)
T PF05525_consen 88 IGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSL-NPSKIVDRIGKFLTPILLILLAILIIKG--IF 164 (427)
T ss_pred HHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 311 11110 0111222333445 3444444443333433322 22234455554443 2222222222222 23
Q ss_pred CCCccc-ccceeccccC--CC--hHHHHHHHhcccchhHHHHHhHhhhhhcccccccccchhhhHHHHHHHHHHHHHHHH
Q 000794 184 QPEIPL-SVNGMLTKFS--GD--SAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMV 258 (1281)
Q Consensus 184 ~Pd~ge-V~~GLvP~lp--~~--sl~~aVALIGATImPhNlYLHSaLVqsR~~~~~~s~~a~r~D~~~gil~v~lgsfLI 258 (1281)
+|.-.. ...+-...-| .+ .-|+.|=.+++.+--- +..++ .+++.... ++...+.+..+-+....+.++|
T Consensus 165 ~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~-iIi~~--i~~~g~~~---~k~~~~~~~~ag~ia~~lL~~I 238 (427)
T PF05525_consen 165 SPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI-IIINA--IRQKGYKD---KKEIKKYTIKAGLIAGILLALI 238 (427)
T ss_pred cCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH-HHHHH--HHHhCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 443211 0011001001 00 1122333333222111 11111 12222111 1222333333322122334566
Q ss_pred HHHHHHHHHHhhhcCCccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhhCCCcCCchHH
Q 000794 259 NYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLS-GQVVLQDFLRLDIPGWLHH 337 (1281)
Q Consensus 259 NlaIViVaAavLygtGi~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlA-GQ~VmeGFL~lri~~w~Rr 337 (1281)
...+.-+||..-..-+...+..+-....-+..|| +.+.+++++..+.|.+++++.-+-+ +++.-+-+ + +. ..|.
T Consensus 239 Y~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G-~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~-~-ki--sY~~ 313 (427)
T PF05525_consen 239 YGGLAYLGATSSGSFPDDINGAELLSQIANHLFG-SAGQILLGIIVFLACLTTAIGLISACAEYFSELF-P-KI--SYKV 313 (427)
T ss_pred HHHHHHHccCCcccccCCCCHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cc--ChHH
Confidence 6666666665421111122222222334566676 7899999999999999998865544 34443333 3 22 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000794 338 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 389 (1281)
Q Consensus 338 LitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR 389 (1281)
+ ..++. +...+++- .| +.+++.++-=+..+.=|.+++.++.-.-+|
T Consensus 314 ~-v~i~~-i~S~~ian-~G---l~~Ii~~s~PiL~~iYP~~IvLIll~l~~~ 359 (427)
T PF05525_consen 314 W-VIIFT-IFSFIIAN-LG---LDQIIKISVPILMFIYPVAIVLILLNLFDK 359 (427)
T ss_pred H-HHHHH-HHHHHHHH-hC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 21222 22222222 34 566666666666677787776655433333
No 39
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.14 E-value=0.0033 Score=72.55 Aligned_cols=137 Identities=7% Similarity=0.053 Sum_probs=94.3
Q ss_pred hHHHHHhhhhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHhhcCch
Q 000794 21 VLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKW 99 (1281)
Q Consensus 21 ~~rklLa~lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVV-TGk~LAEicRe~Ygk~ 99 (1281)
+.|..++++| -++.++|--.=.+.+.. ..||+.=.|-+++++++-.++-.....+|-. --++..+..+.-.|++
T Consensus 5 ~~~~~f~~ig--~~vGAGfAsGqEi~QFF---~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~ 79 (349)
T COG3949 5 FMRWAFAFIG--TVVGAGFASGQEIMQFF---GKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHH--HhhcccccchHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHH
Confidence 4566677777 55555554333333332 3678888888888888877777777777655 3456778888777877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000794 100 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLW 165 (1281)
Q Consensus 100 ~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~ 165 (1281)
+..+.=++..+..+.+.+-+..|.+..++-.+|+|.|+|.+++.....+.+++++ .++++.+.
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~---vegi~tvn 142 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR---VEGIITVN 142 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc---ccceeeeh
Confidence 7766655566666666677777888888999999999997777766666666543 45554443
No 40
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.14 E-value=0.02 Score=69.52 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=30.3
Q ss_pred HhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 53 AHFGFDLVALMLVFNF-----AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 53 A~fGY~LLWVLLLAtI-----maillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
|.+|+.++...+++.+ .++.+.||++...-.+| +...-.++-+|+.+.++
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 4666777544444433 45666666665431234 66777888888876654
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.11 E-value=0.011 Score=76.89 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000794 296 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 326 (1281)
Q Consensus 296 A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGF 326 (1281)
...+..+|++++.+++.+++.+++..++..+
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~Am 416 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQAL 416 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999888888776555444
No 42
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.09 E-value=0.051 Score=64.13 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHH
Q 000794 65 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 104 (1281)
Q Consensus 65 LAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~L 104 (1281)
+..++++.+-|++.++-. +| +...-.++.+|+.+.++.
T Consensus 52 ~~~~~a~~~aEl~s~~P~-~G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPT-AG-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 344566778899988865 33 566777889999877653
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.07 E-value=0.015 Score=68.67 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=49.6
Q ss_pred HhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHH
Q 000794 33 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 107 (1281)
Q Consensus 33 fLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~ 107 (1281)
+.+=.-++|+||+..-..-|.+.|-...+.++-..+-++.+=.++.---..+| +-.+.+.++|||+...++...
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHHHHH
Confidence 33445689999999999999888877666666555555555444443333355 455667788999888766433
No 44
>PRK10746 putative transport protein YifK; Provisional
Probab=98.07 E-value=0.056 Score=64.78 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CchHHHHHH
Q 000794 68 FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFL 141 (1281)
Q Consensus 68 ImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfG-iPL~~GVLI 141 (1281)
+++..+-||+.++=. +| +...-.++.+|+.+.++.....-++-+..-..|+.+.+.-++..++ .|.|...++
T Consensus 58 ~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~ 130 (461)
T PRK10746 58 FIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALI 130 (461)
T ss_pred HHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHH
Confidence 344455677766632 44 6777888888887654421111111122222344444444444443 465554433
No 45
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.97 E-value=0.0071 Score=71.86 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=52.7
Q ss_pred hcccCChhhHHHHhHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 000794 38 GYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL 114 (1281)
Q Consensus 38 AyIDPGnIaT~lQAGA~fG---Y~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAIIa 114 (1281)
+-+...++.+..... .+| ++-++.+++++++..++-.+.++.|..||.+-.-..|..||.+...+..++-.+..++
T Consensus 26 ~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~ig 104 (442)
T TIGR00800 26 AAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIG 104 (442)
T ss_pred HhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 334444444444333 233 4567778888999999999999999999999999999999987766544443333333
No 46
>PRK11021 putative transporter; Provisional
Probab=97.94 E-value=0.085 Score=61.78 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=24.0
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000794 285 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 285 ~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vm 323 (1281)
..+++.+| +++..++.+..+.+.+++..+..++...++
T Consensus 250 ~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l 287 (410)
T PRK11021 250 GIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFARLV 287 (410)
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667776 556667777777777777766666544333
No 47
>TIGR00909 2A0306 amino acid transporter.
Probab=97.92 E-value=0.067 Score=62.65 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=27.5
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000794 286 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 326 (1281)
Q Consensus 286 lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGF 326 (1281)
+.++. +++++..+..++++.+.+++..+..++...++..+
T Consensus 269 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 269 VGYDL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 45788788888888888888887777665544433
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.90 E-value=0.04 Score=65.63 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=85.7
Q ss_pred hhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHhhcCchhHHHHH
Q 000794 29 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK---DLAQICGEEYDKWTCVFIG 105 (1281)
Q Consensus 29 lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk---~LAEicRe~Ygk~~~~~Lw 105 (1281)
.|=-+++.-..+|+|=+.-=.+++-..=+-.+-.++++-++.+..+++-.|.-.-+++ +.....++++||.++++..
T Consensus 12 ~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 4444566666899998887777663322223333455556667777777777666544 7999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhC---CchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 000794 106 VQTELSVILLDLTMVLGIAHGL----NLLMG---VELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVL 178 (1281)
Q Consensus 106 I~aeLAIIasDIaEVIGtAIAL----nLLfG---iPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi 178 (1281)
+...+.+.+..++=+++.+--+ .-.++ .+..+++++.++....+.++++ ....|. ..+++..++++|++
T Consensus 92 ~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~-~~~lk~---ts~l~~~~v~~~~~ 167 (415)
T COG0814 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGT-LAVLKI---TSLLVFGKVIYLVL 167 (415)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhch-hHHHHH---HHHHHHHHHHHHHH
Confidence 5554444333222222221111 11122 4445544444444444555443 233333 33344455555555
Q ss_pred HHHhhCCCcc
Q 000794 179 GVLISQPEIP 188 (1281)
Q Consensus 179 ~lfis~Pd~g 188 (1281)
..+.--|.|.
T Consensus 168 l~~~~~~~~~ 177 (415)
T COG0814 168 LVVYLIPHWN 177 (415)
T ss_pred HHHHHhcccC
Confidence 5555556664
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.90 E-value=0.025 Score=67.48 Aligned_cols=37 Identities=3% Similarity=0.090 Sum_probs=23.5
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000794 285 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 321 (1281)
Q Consensus 285 ~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~ 321 (1281)
+.+...+|.+++..++.+.++.+.+++.++..++...
T Consensus 293 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 329 (482)
T TIGR00907 293 QIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSR 329 (482)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667754666666666667777777766665433
No 50
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.89 E-value=0.12 Score=61.76 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=24.9
Q ss_pred HhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000794 289 QVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 325 (1281)
Q Consensus 289 pvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeG 325 (1281)
+.+|.++...++.++++.+.+++..+..++...++-.
T Consensus 282 ~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a 318 (478)
T TIGR00913 282 QNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYA 318 (478)
T ss_pred HHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456667777777888888788877777665444433
No 51
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.89 E-value=0.12 Score=61.76 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 283 Aa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vm 323 (1281)
...++++.+| +++..++.++++.+.+++..+.++++..++
T Consensus 266 ~~~~~~~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~~ 305 (468)
T TIGR03810 266 MAYVLEHMVG-TWGAVLINIGLIISILGAWLSWTLLPAEIP 305 (468)
T ss_pred HHHHHHHHcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677766 788888999988888888888877764443
No 52
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.87 E-value=0.018 Score=69.33 Aligned_cols=229 Identities=14% Similarity=0.184 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHh
Q 000794 74 QYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFF 152 (1281)
Q Consensus 74 QeLSARLGVVTGk~LAEicRe~Ygk-~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~l 152 (1281)
..++-||==.-+-+.++.+.+||.. ..+++..+.+.+.....-++++.|++.-+.+++|+|..+++++..+...+..++
T Consensus 92 fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~ 171 (529)
T COG4147 92 FLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVL 171 (529)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHh
Confidence 3345666666677899999999875 455555555555555567889999999999999999999999988888777776
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHh------hCCCcc-cccceec----------cccC-C---ChHHH-HHHHh
Q 000794 153 AGQLENYKAKLLWICTAGIILLSYVLGVLI------SQPEIP-LSVNGML----------TKFS-G---DSAFS-IMSLL 210 (1281)
Q Consensus 153 gsy~g~RKlE~L~~~LI~lM~L~FVi~lfi------s~Pd~g-eV~~GLv----------P~lp-~---~sl~~-aVALI 210 (1281)
+--++......+-.+ ++.++|++...+ ..|..- ....... |.+. . +.+.. ..=++
T Consensus 172 GGM~atTW~Qi~qav---lLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 172 GGMKATTWVQIIQAV---LLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred cchhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 633222222222111 112222222211 122211 1111111 1111 1 12222 24567
Q ss_pred cccchhHHH--HHhHhhhhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-----------
Q 000794 211 GASMMPHNF--YLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVL----------- 277 (1281)
Q Consensus 211 GATImPhNl--YLHSaLVqsR~~~~~~s~~a~r~D~~~gil~v~lgsfLINlaIViVaAavLygtGi~V----------- 277 (1281)
|+.=+||.+ |.-- + +.++.|+....+. .+.+.|-+...++..+|..+-.++..-
T Consensus 249 GTAgLPHil~RFfTv---------p--~~k~AR~Sv~wA~--~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~ 315 (529)
T COG4147 249 GTAGLPHILMRFFTV---------P--DAKEARKSVFWAT--GFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKT 315 (529)
T ss_pred ccCCCCeEEEEEEec---------C--cHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccc
Confidence 888899965 2211 1 1123444433332 233455566666666776664432211
Q ss_pred --------cCH-HHHHHHHHHhhc-chhHHHHHHHHHHHHHhHHHHHHHHH
Q 000794 278 --------LTF-QDAMSLMEQVFR-SPVVPFAFVLVLFFSNQIIAVNWNLS 318 (1281)
Q Consensus 278 --------~tl-~dAa~lLepvLG-g~~A~~LFAIGLLAAGqSSTITgTlA 318 (1281)
..- .+++-++.|.+| ++|-..+.+.|.||+.+++.-..++.
T Consensus 316 ~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~ 366 (529)
T COG4147 316 GDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLV 366 (529)
T ss_pred ccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHH
Confidence 111 455667778887 47766666677777766655443443
No 53
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.87 E-value=0.027 Score=67.54 Aligned_cols=67 Identities=16% Similarity=-0.038 Sum_probs=39.7
Q ss_pred hcccCChh-----hHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcC-chhHHHHHHH
Q 000794 38 GYVDPGKW-----AVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQ 107 (1281)
Q Consensus 38 AyIDPGnI-----aT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Yg-k~~~~~LwI~ 107 (1281)
+.+|-||+ .++...|+.|= +++++ ....+++++..+=-=+|--++++-.+..|+--+ |++.++-|+.
T Consensus 21 sAVGLGNiWrFPy~~~~nGGgAFl--l~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~g 93 (439)
T COG0733 21 SAVGLGNIWRFPYMAGENGGGAFL--LPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFG 93 (439)
T ss_pred HHhcccccccCCeEeeecCcchHH--HHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHH
Confidence 37999997 45555665553 33332 222334444333333666678888888887665 6777766653
No 54
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.86 E-value=0.14 Score=61.66 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 66 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 66 AtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
+.+.++.+-||+.++-. +| +.-.-.++.||+.+.++
T Consensus 90 ~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 90 SIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 34445566666666542 33 56667778899887654
No 55
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.84 E-value=0.0017 Score=76.48 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=51.1
Q ss_pred hhhhhcccCChhhHHHHhHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHH
Q 000794 34 LISIGYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 110 (1281)
Q Consensus 34 LvSIAyIDPGnIaT~lQAGA~fG---Y~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeL 110 (1281)
+...+-+-..++.+.... ..+| ++-++.++++++++.++-.+.+++|..||.+-....|..||.+.+.+..++..+
T Consensus 17 iW~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i 95 (440)
T PF02133_consen 17 IWFGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAI 95 (440)
T ss_dssp HHCHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHH
Confidence 333444455555555544 4454 345677888899999999999999999999999999999998776655444333
Q ss_pred HHHH
Q 000794 111 SVIL 114 (1281)
Q Consensus 111 AIIa 114 (1281)
..++
T Consensus 96 ~~ig 99 (440)
T PF02133_consen 96 SAIG 99 (440)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 56
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.82 E-value=0.16 Score=60.87 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=36.9
Q ss_pred hhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 29 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN-----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 29 lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAt-----ImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
.+=.++..++-++-.++.+. |.+|...+...+++. +.++.+-||+.++-. +| +...-.|+.+|+.+.+.
T Consensus 6 ~~l~~~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 6 VTLAIMNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 33344444555555565444 455555543333333 244455666665432 23 56677888899876543
No 57
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.81 E-value=0.031 Score=66.98 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=35.5
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000794 285 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 330 (1281)
Q Consensus 285 ~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lr 330 (1281)
.+++..+| .|..++.++.++.-++++.+++.+-++...+-.++.+
T Consensus 324 ~af~~~~g-~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 324 QALSYGLG-SFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777776 6888999999999999999999888777666554544
No 58
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.73 E-value=0.17 Score=59.94 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 64 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 64 LLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
++..+.++.+-|++.++=. +| +.-.-.++.||+.+.++
T Consensus 54 v~~l~~al~~aEl~s~~P~-~G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPE-NG-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHhhcCC-CC-CceeeHHHhcCChhHHH
Confidence 4455667777888877643 23 33345667788876654
No 59
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.68 E-value=0.25 Score=59.67 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=58.9
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 111 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLA 111 (1281)
|+..=.-+.|+||++==..-|.+.|-+..|.++-.++-++.+=-++.=--..+|-++.+.- ++-||+...++.+.+-++
T Consensus 14 G~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~-~rv~~~f~~~f~~~i~l~ 92 (439)
T PRK15433 14 GFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLS-TPIGKVAGVLLATVCYLA 92 (439)
T ss_pred HHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-hhcchHHHHHHHHHHHHH
Confidence 6666677999999999999999999988888888888887777666555555664555544 567888777665555444
Q ss_pred H
Q 000794 112 V 112 (1281)
Q Consensus 112 I 112 (1281)
+
T Consensus 93 I 93 (439)
T PRK15433 93 V 93 (439)
T ss_pred H
Confidence 3
No 60
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.66 E-value=0.22 Score=58.03 Aligned_cols=43 Identities=5% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000794 284 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 326 (1281)
Q Consensus 284 a~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGF 326 (1281)
...+.+..|+++...++.++++.+.+.+..+...+...++..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhccccc
Confidence 3334444455788889999998888888888777765444333
No 61
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.58 E-value=0.092 Score=63.31 Aligned_cols=122 Identities=9% Similarity=0.059 Sum_probs=75.0
Q ss_pred ccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHhhcCchhHHH----HHHHHHHHHH
Q 000794 40 VDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF----IGVQTELSVI 113 (1281)
Q Consensus 40 IDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVV--TGk~LAEicRe~Ygk~~~~~----LwI~aeLAII 113 (1281)
+|.|=..-+..+=+..|-..+.+-+++-++.+++.+.-+-+-+. +-.+....+++.+|++..++ .|++- +
T Consensus 29 IGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w----v 104 (462)
T COG1113 29 IGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW----V 104 (462)
T ss_pred hhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH----H
Confidence 34443333334444566666666666667777777766666665 24489999999999987544 33322 2
Q ss_pred HHHHHHHHHHHHHHHHhh-CCchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000794 114 LLDLTMVLGIAHGLNLLM-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWI 166 (1281)
Q Consensus 114 asDIaEVIGtAIALnLLf-GiPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~ 166 (1281)
..-++|+.++++=++.-| ++|.|+.+++..+....+=++. -+.+..+|+.++
T Consensus 105 ~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~s-Vk~FGE~EfWfA 157 (462)
T COG1113 105 LVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLIS-VKVFGELEFWFA 157 (462)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 223455656666667677 6799998887766555443332 234556676554
No 62
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.57 E-value=0.3 Score=57.82 Aligned_cols=121 Identities=13% Similarity=0.218 Sum_probs=74.4
Q ss_pred HHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhcC----CCHHHHHHhhcCc-hhHH
Q 000794 32 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFA---AI-FCQYLSARIAVVTG----KDLAQICGEEYDK-WTCV 102 (1281)
Q Consensus 32 GfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtIm---ai-llQeLSARLGVVTG----k~LAEicRe~Ygk-~~~~ 102 (1281)
++..++.|+.+...... -||.|.|.|-|+++ +++= .+ .+-.++-|+..... -++-+.+|.||-. ...|
T Consensus 47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlL-a~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~ 123 (473)
T COG4145 47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLL-AMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVW 123 (473)
T ss_pred hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHH
Confidence 44555667776666654 36778888899544 3221 11 11112222222221 2466777888754 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcc
Q 000794 103 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 103 ~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy 155 (1281)
..-+...+..+.....+++|.|=-++-..|+|.-.|.+++++.+.+..+++.+
T Consensus 124 las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 124 LASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcce
Confidence 33333444444455568999998888888999999999999988888887754
No 63
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.56 E-value=0.16 Score=61.24 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=136.9
Q ss_pred hhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhh-----c-C---------chh
Q 000794 36 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE-----Y-D---------KWT 100 (1281)
Q Consensus 36 SIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~-----Y-g---------k~~ 100 (1281)
.++-+|.|||+--..|=+--|-.-+..+.+..+++....+.=. .|++.+|++ | | =..
T Consensus 73 la~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~--------~La~~Yr~kd~~G~~~GGP~yYi~kGl~~ 144 (452)
T COG1115 73 LAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAES--------TLAQKYRVKDKDGEYRGGPAYYIEKGLGM 144 (452)
T ss_pred HHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHH--------HHHhheeEeCCCCCCcCChHHHHHhhcCC
Confidence 3457999999887777777777766666667777766655443 344444432 1 1 012
Q ss_pred HHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHhhCCch-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 000794 101 CVFIGVQTELSVIL-L----DLTMVLGIAHGLNLLMGVEL-STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILL 174 (1281)
Q Consensus 101 ~~~LwI~aeLAIIa-s----DIaEVIGtAIALnLLfGiPL-~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L 174 (1281)
+|+..+++ +++++ . +.-+.-.++.+++.-||+|. ..|++++++..+++ + .|.+++-++...++=+|++
T Consensus 145 r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI--~---GGi~rIa~v~~~vVPfMA~ 218 (452)
T COG1115 145 RWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVI--F---GGIKRIAKVSSKVVPFMAI 218 (452)
T ss_pred cHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--H---cchHHHHHHHHHHHHHHHH
Confidence 33334444 22222 1 22344466777888899974 55666655544333 3 3677777777777778888
Q ss_pred HHHHHHHhh-CCCcc---cccceeccccCCChHHHHHHHhcccchhHHHH-HhHhhhhhc--ccccccccchh-----hh
Q 000794 175 SYVLGVLIS-QPEIP---LSVNGMLTKFSGDSAFSIMSLLGASMMPHNFY-LHSSIVRRH--QGQVNISKGAL-----CH 242 (1281)
Q Consensus 175 ~FVi~lfis-~Pd~g---eV~~GLvP~lp~~sl~~aVALIGATImPhNlY-LHSaLVqsR--~~~~~~s~~a~-----r~ 242 (1281)
.|++..++. --+.. .+++-.+-+ --+.--.+-|.+|++++--..+ ...++-... .........+. -+
T Consensus 219 ~Yi~~~~~Ii~~n~~~iP~~i~~If~s-AF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~ 297 (452)
T COG1115 219 LYVLVALVIIVLNISQIPAVIALIFSS-AFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVK 297 (452)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHh-cCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHH
Confidence 888755432 11221 111111100 0011112346666655433221 111111000 00000000000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcC---CccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHH
Q 000794 243 DHFFAILCIFSGIYMVNYVLMNSAANLF--YST---GLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 317 (1281)
Q Consensus 243 D~~~gil~v~lgsfLINlaIViVaAavL--ygt---Gi~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTl 317 (1281)
+-+.. +++.|+-++.|..+.|.++ .+. +..+...+=.-.+++..+| +|..++.+++++.=+++|.+.+-+
T Consensus 298 QGlv~----~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g-~~G~~fv~i~l~lFafTTIlg~yy 372 (452)
T COG1115 298 QGLVQ----MLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG-SWGSYFVAIALFLFAFTTILGWYY 372 (452)
T ss_pred HhHHH----HhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 1223332322222222221 111 1111222222345888887 799999999999999999999988
Q ss_pred HHHHHHHhhhC
Q 000794 318 SGQVVLQDFLR 328 (1281)
Q Consensus 318 AGQ~VmeGFL~ 328 (1281)
-++..++=..+
T Consensus 373 yge~~~~fl~~ 383 (452)
T COG1115 373 YGEKNIEFLFG 383 (452)
T ss_pred HHHHHHHHHhC
Confidence 88777665543
No 64
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.56 E-value=0.36 Score=57.69 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=24.0
Q ss_pred hcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000794 291 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 326 (1281)
Q Consensus 291 LGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGF 326 (1281)
+|++++..++.++++.+.+++..+..+++..++-++
T Consensus 260 ~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 260 LNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777677665544333
No 65
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.49 E-value=0.42 Score=56.80 Aligned_cols=38 Identities=5% Similarity=-0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 64 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 64 LLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
+.+.++++.+-||+.++=. +| +.-.-.++.||+.+.++
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4555667777888877643 34 66677888899987653
No 66
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.26 E-value=0.79 Score=55.10 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=58.4
Q ss_pred hHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHH
Q 000794 31 PVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 108 (1281)
Q Consensus 31 PGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~a 108 (1281)
=|++.=+-+.|+||++==...|.+.|....|.++-..+-++.+=-+..=.....|++.-+.- ++-+||...++-+..
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~-~~i~~~fg~~f~~~i 86 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLA-TRIGPWFGVLFAIAI 86 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHh-hhccchHHHHHHHHH
Confidence 36666677899999999999999999998888877777777776666666667788876665 567887776554333
No 67
>PRK10836 lysine transporter; Provisional
Probab=97.13 E-value=1.1 Score=54.18 Aligned_cols=37 Identities=5% Similarity=-0.072 Sum_probs=22.9
Q ss_pred HHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000794 287 MEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 324 (1281)
Q Consensus 287 LepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vme 324 (1281)
+.+. |.+++..++.++++.+.+++.....+++..++-
T Consensus 288 ~~~~-g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~ 324 (489)
T PRK10836 288 FQHA-GLLSAAAVMNAVILTAVLSAGNSGMYASTRMLY 324 (489)
T ss_pred HHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 345566677777777777777777776544443
No 68
>PRK10655 potE putrescine transporter; Provisional
Probab=97.11 E-value=1 Score=53.37 Aligned_cols=33 Identities=9% Similarity=-0.031 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 69 AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 69 maillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
+++.+-|++.++=. +| +...-.++.||+.+.++
T Consensus 54 ~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf~ 86 (438)
T PRK10655 54 LAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNFM 86 (438)
T ss_pred HHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHHH
Confidence 35556666655422 33 55677788899876654
No 69
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.02 E-value=1 Score=51.87 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHhhcCchhHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHhhCCch
Q 000794 63 MLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFI-GVQT-----ELSVILLDLTMVLGIAHGLNLLMGVEL 135 (1281)
Q Consensus 63 LLLAtImaillQeLSARLGVV-TGk~LAEicRe~Ygk~~~~~L-wI~a-----eLAIIasDIaEVIGtAIALnLLfGiPL 135 (1281)
++++.+++++.-.+-++++.. -++++.|..++.+||+..+++ |+.. ..+.+..+.++++- ..++-..|.
T Consensus 40 ~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~tp~ 115 (359)
T TIGR00912 40 IILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK----TYLLPRTPI 115 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCH
Confidence 344444444444444555433 378999999999999877653 2221 11122222222221 111224577
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 000794 136 STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS 175 (1281)
Q Consensus 136 ~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~ 175 (1281)
++.+++..+.+... .+.|.+.+.++..++..++.+.
T Consensus 116 ~~~~l~~l~~~~~~----~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 116 IVIIILIIIVSIYI----VRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHH----HHccHHHHHHHHHHHHHHHHHH
Confidence 76554444433222 2346666655544443344444
No 70
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.76 E-value=0.4 Score=59.08 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhcC-CccccC--HHHHHHHHHHhhcchhHHHH---HHHHHHHHHhHHHHHHHHHH-HHHHHhhh
Q 000794 255 IYMVNYVLMNSAANLFYST-GLVLLT--FQDAMSLMEQVFRSPVVPFA---FVLVLFFSNQIIAVNWNLSG-QVVLQDFL 327 (1281)
Q Consensus 255 sfLINlaIViVaAavLygt-Gi~V~t--l~dAa~lLepvLGg~~A~~L---FAIGLLAAGqSSTITgTlAG-Q~VmeGFL 327 (1281)
.+++..+++++-+..+... ...+.+ -+-..+.+.+.+|...+-.+ -.+++|..|+++.++.+-.- .+.=+|-+
T Consensus 296 ~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~L 375 (550)
T KOG1289|consen 296 GFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGL 375 (550)
T ss_pred HHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCC
Confidence 4566666666655555321 111111 23456678888886555222 23444555555555433211 11113322
Q ss_pred CCCcCCch----------HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccCC
Q 000794 328 RLDIPGWL----------HHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR--QIMGVH 395 (1281)
Q Consensus 328 ~lri~~w~----------RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR--~IMGey 395 (1281)
. ..+|. .++++..+++.-.+.+..+.+.. ..+-+ ++-++.++.+-.++--++++.-.| =.-|++
T Consensus 376 P--~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~-Af~Al-fs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~ 451 (550)
T KOG1289|consen 376 P--FSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASAT-AFNAL-FSAAAIALFIAYAIPIFCRLFFGRDDFRPGPF 451 (550)
T ss_pred C--CcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHH-HHHHH-HHHHHHHHHHHHHHhHHhheeecccccCCCCc
Confidence 2 22221 22333333332222233333322 22222 232333344444433333443334 344677
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 000794 396 KISQYHEFLVLITFMGMLGL 415 (1281)
Q Consensus 396 rnS~~~nILawli~llIi~L 415 (1281)
.-+++.+...+++++.+++.
T Consensus 452 ~lGk~s~p~~~i~v~w~lf~ 471 (550)
T KOG1289|consen 452 NLGKFSKPIGIIAVLWVLFM 471 (550)
T ss_pred cccccccchHHHHHHHHHHH
Confidence 77777777777775555544
No 71
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.73 E-value=2.2 Score=51.40 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 60 VALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 60 LWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
+...+...++++.+-||+.++=. +| +.-.-.++-+|+.+.++
T Consensus 54 li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 54 PVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 33344445556667777777643 34 55666677788876554
No 72
>PLN03074 auxin influx permease; Provisional
Probab=96.67 E-value=1.1 Score=54.67 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=31.8
Q ss_pred HHHhhhCCC-cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 322 VLQDFLRLD-IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 385 (1281)
Q Consensus 322 VmeGFL~lr-i~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~L 385 (1281)
+.|..++.+ .+.+..|++.|.+.++.+.+++.. .+.+..++-+...+....+-|.+=+++++
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~--IP~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAII--FPFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554332 122334566777777777776653 22344455555555554444444444444
No 73
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.59 E-value=3.3 Score=51.51 Aligned_cols=33 Identities=3% Similarity=-0.121 Sum_probs=24.3
Q ss_pred hcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000794 291 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 291 LGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vm 323 (1281)
.|.+++..+..+|++.+.+++.++..++...++
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888889888888888777777654443
No 74
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.33 E-value=3.6 Score=49.09 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 64 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 64 LLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
+.+.++++.+.||+.++=. +| +...-.++ +|+.+.++
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 3455667778888888764 44 56666666 78766544
No 75
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.30 E-value=3.4 Score=48.55 Aligned_cols=34 Identities=9% Similarity=-0.109 Sum_probs=22.9
Q ss_pred HHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000794 287 MEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 321 (1281)
Q Consensus 287 LepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~ 321 (1281)
+....| .+...+..++++.+.+++.++...+...
T Consensus 278 ~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~sR 311 (466)
T COG0531 278 ALFGGG-NWGAIIIAILALLSLFGSLLAWILAVSR 311 (466)
T ss_pred HHHcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333 5677788888888888887777766543
No 76
>PRK09928 choline transport protein BetT; Provisional
Probab=96.23 E-value=3.8 Score=52.33 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHhhcCch----hH-H--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCc
Q 000794 68 FAAIFCQYLSARIAVVTGKDLAQICGEEYDKW----TC-V--FIGVQTELSVILLDLT-MVLGIAHGLNLLMGVE 134 (1281)
Q Consensus 68 ImaillQeLSARLGVVTGk~LAEicRe~Ygk~----~~-~--~LwI~aeLAIIasDIa-EVIGtAIALnLLfGiP 134 (1281)
++++.+-+.+-|.+.- ..+-..|+--+|+. +. . ++.+++.+..+++.++ .+.=+..|++.+||+|
T Consensus 158 lvglalAYf~yr~~~p--l~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~ 230 (679)
T PRK09928 158 LMGMALGYFSYRYNLP--LTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP 230 (679)
T ss_pred HHHHHHHHHhhcCCCC--CchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5566666666666553 45666665555532 21 1 2344455555555555 1222567788899985
No 77
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.21 E-value=0.71 Score=57.48 Aligned_cols=35 Identities=9% Similarity=-0.030 Sum_probs=28.3
Q ss_pred cchhHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000794 292 RSPVVPF---AFVLVLFFSNQIIAVNWNLSGQVVLQDF 326 (1281)
Q Consensus 292 Gg~~A~~---LFAIGLLAAGqSSTITgTlAGQ~VmeGF 326 (1281)
+..++++ ++.++++.+..++...+.+++..++-++
T Consensus 313 ~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 313 GNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred hccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 4456777 9999999999999999999987666555
No 78
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.14 E-value=4.9 Score=48.85 Aligned_cols=71 Identities=8% Similarity=-0.034 Sum_probs=37.3
Q ss_pred hhhHHhhhhhcccCChhhHHH-HhHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 29 VLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLVFNF----AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 29 lGPGfLvSIAyIDPGnIaT~l-QAGA~fGY~LLWVLLLAtI----maillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
.+=..+...+-++-+++.... ++|. -.++|.++.+.+ .++.+-|++.++=-.+| +.-.-.++-+|+.+.++
T Consensus 12 ~~l~~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 12 IGLILMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 333334444445556665433 3342 134454444433 44556666665432234 67778888899877654
No 79
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.12 E-value=5.4 Score=49.24 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=42.6
Q ss_pred cCChhhHHHHhHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhH
Q 000794 41 DPGKWAVIIEGGAHFGFDL-----VALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTC 101 (1281)
Q Consensus 41 DPGnIaT~lQAGA~fGY~L-----LWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~ 101 (1281)
|.=|+-+..-++.-+...| +-.+++++++.+++-.+.+|-|...|-+....+|.-||-+.+
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga 118 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGA 118 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhh
Confidence 3344444444444444333 334666777777888889999999999999999999986544
No 80
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.09 E-value=2.6 Score=51.71 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=34.2
Q ss_pred cccCChhhHHHHhHHhhh-hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcC
Q 000794 39 YVDPGKWAVIIEGGAHFG-FD-LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD 97 (1281)
Q Consensus 39 yIDPGnIaT~lQAGA~fG-Y~-LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Yg 97 (1281)
.+|.||+-.--.--.++| -. |+--++...++++++-.+=.-+|-.++++..+..++--|
T Consensus 18 ~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p 78 (523)
T PF00209_consen 18 AVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCP 78 (523)
T ss_dssp HSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 588888866554433332 22 333344445556666666666788888888777644434
No 81
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.08 E-value=0.12 Score=61.68 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=23.2
Q ss_pred hcchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 000794 291 FRSPVVPFAFVLVLFFSNQIIAVNWNLSG 319 (1281)
Q Consensus 291 LGg~~A~~LFAIGLLAAGqSSTITgTlAG 319 (1281)
.|+++...++.++++.+.+++.....+++
T Consensus 283 ~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 283 SGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred cccccccceecccchhhhhhhhhhhhccc
Confidence 45678888888999999888888777765
No 82
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.98 E-value=8.8 Score=43.92 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHhhcCchhHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHhhCCch
Q 000794 63 MLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFIGVQ---TELSVIL---LDLTMVLGIAHGLNLLMGVEL 135 (1281)
Q Consensus 63 LLLAtImaillQeLSARLGVV-TGk~LAEicRe~Ygk~~~~~LwI~---aeLAIIa---sDIaEVIGtAIALnLLfGiPL 135 (1281)
++++.++++++-.+..++.-- -|+++.|..++.+||+...++.+. -.+...+ ....+++.. .++-..|.
T Consensus 38 ~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~----~~lp~TP~ 113 (320)
T PF03845_consen 38 VLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT----YLLPETPI 113 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcCCH
Confidence 566667777777777777765 799999999999999877643221 1222222 233333322 22224588
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000794 136 STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPE 186 (1281)
Q Consensus 136 ~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfis~Pd 186 (1281)
|+-.++..+.++... ++|.+.+-++...+..++.+.++...+..-++
T Consensus 114 ~~i~~~~ll~~~y~a----~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~ 160 (320)
T PF03845_consen 114 WVIILLFLLVAAYAA----RKGIEVIARVAEILFPIFLILLLLILLLSIPN 160 (320)
T ss_pred HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 887766665554433 24566554433333333333333333333343
No 83
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.92 E-value=1.5 Score=52.29 Aligned_cols=65 Identities=23% Similarity=0.216 Sum_probs=43.8
Q ss_pred hhhcccCChhhHHHHhHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHhhcCchhHHHH
Q 000794 36 SIGYVDPGKWAVIIEGGAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI 104 (1281)
Q Consensus 36 SIAyIDPGnIaT~lQAGA~fGY~--LLWVLLLAtImaillQeLSARLGVV--TGk~LAEicRe~Ygk~~~~~L 104 (1281)
+||..| =+.--..+ +.|||- +||+++- ++++=.+|.+.+=..-+ -||++.|+++++.||..+.++
T Consensus 64 sIAGaG--PI~GPi~a-a~~GwlPa~lWI~~G-~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 64 SIAGAG--PIVGPILA-AQFGWLPALLWIVFG-CIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred HHhccc--cchHHHHH-HHhcchHHHHHHHHc-cHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 444333 34444555 999996 7887664 45555566655544444 499999999999999877654
No 84
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=93.93 E-value=23 Score=44.37 Aligned_cols=72 Identities=25% Similarity=0.260 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHhhhC---CCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 309 QIIAVNWNLSGQVVLQDFLR---LDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 385 (1281)
Q Consensus 309 qSSTITgTlAGQ~VmeGFL~---lri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~L 385 (1281)
..=.+|..+++.+|+...-- .+.++|.|..--.+++++++.+ ++.|.-...| ++.-...|||+++-++..
T Consensus 416 ~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~l--L~~ggl~aLq-----t~~ii~alPF~~vll~~~ 488 (537)
T COG1292 416 AIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVL--LLIGGLEALQ-----TAAIITALPFSLVLLVMM 488 (537)
T ss_pred HHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH--HHhCCHHHHH-----HHHHHHHccHHHHHHHHH
Confidence 34445667778888776632 3445566543333344444433 2334211111 122236689988776655
Q ss_pred Hh
Q 000794 386 AS 387 (1281)
Q Consensus 386 tN 387 (1281)
.+
T Consensus 489 ~s 490 (537)
T COG1292 489 FS 490 (537)
T ss_pred HH
Confidence 43
No 85
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.81 E-value=22 Score=43.64 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=36.8
Q ss_pred HHHhhhCCCcC-----CchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000794 322 VLQDFLRLDIP-----GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 387 (1281)
Q Consensus 322 VmeGFL~lri~-----~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtN 387 (1281)
++|...+.+.+ .-..|++.|.+.+++++.++...- -...++.+...+....+.+.+-+++++.-
T Consensus 330 ~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~P--fFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 330 VVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFP--FFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhcc--ccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555554333 223567788888888887766321 13345556666666666666655666544
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=93.79 E-value=23 Score=43.92 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC--CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 000794 294 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL--DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 371 (1281)
Q Consensus 294 ~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~l--ri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~ 371 (1281)
|++. +..+..+...+...+|...++.+++..+-.. +.++...|+++-++..+-++.+....|.+ ..|- +..
T Consensus 389 P~~~-i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~-~lq~-----~~i 461 (485)
T PF02028_consen 389 PLSK-ILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLD-ALQS-----ASI 461 (485)
T ss_dssp TTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSH-HHHH-----HHH
T ss_pred hHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHH-HHHH-----HHH
Confidence 4554 3344444444666677777777777777432 23344455555444433333333444543 2332 222
Q ss_pred HHHHHHHHHHHHHHHh
Q 000794 372 AIMLPSSVIPLFRVAS 387 (1281)
Q Consensus 372 SL~LPFaLIPLL~LtN 387 (1281)
...+||.++.++...+
T Consensus 462 i~~lP~~~v~~~~~~~ 477 (485)
T PF02028_consen 462 IGGLPFSFVMLLMCIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888877665543
No 87
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=93.51 E-value=1.3 Score=55.53 Aligned_cols=113 Identities=11% Similarity=0.184 Sum_probs=66.5
Q ss_pred hhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHhhcCchhHHHHHHHHHHHH
Q 000794 37 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYL----SARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 112 (1281)
Q Consensus 37 IAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeL----SARLGVVTGk~LAEicRe~Ygk~~~~~LwI~aeLAI 112 (1281)
+.++..+++..-...|+.||.+.+|+.+-..+...+.-.. -.|.++. +.-|-.+.+|++..+. +|.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~-l~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRY-LATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchh-hHHHHHHHH
Confidence 5678888888888899999998877755544433332221 1233443 3567777888877443 232222222
Q ss_pred HHHHHHHHH-HHHHHHHHhhCCchHHHHHHHHHHHHHHHHhh
Q 000794 113 ILLDLTMVL-GIAHGLNLLMGVELSTCVFLAAADAILFPFFA 153 (1281)
Q Consensus 113 IasDIaEVI-GtAIALnLLfGiPL~~GVLITavdt~lLL~lg 153 (1281)
+..-+..++ --|++++..+|+.++..++++.+.|.+...++
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~G 175 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALG 175 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhc
Confidence 222222111 34788898899988877666666665554443
No 88
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=93.19 E-value=28 Score=42.98 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC--CC---cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 000794 294 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR--LD---IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQ 368 (1281)
Q Consensus 294 ~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~--lr---i~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQ 368 (1281)
|++. +..+..+...+...+|...++.+++..+.. .+ .++...|+++-++..+-++.+. +.|. ++.. .=+
T Consensus 353 P~~~-i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll-~~gG-~l~~---lQ~ 426 (453)
T TIGR00842 353 PLGT-ITSALALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLL-FSGG-SLAA---LQT 426 (453)
T ss_pred cHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHH-HhcC-cHHH---HHH
Confidence 4443 333444444466667777777787776622 22 1334444555443322222222 3332 1111 112
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000794 369 VMVAIMLPSSVIPLFRVAS 387 (1281)
Q Consensus 369 VI~SL~LPFaLIPLL~LtN 387 (1281)
+.....+||.++-++...+
T Consensus 427 ~~ii~alP~~~i~~l~~~s 445 (453)
T TIGR00842 427 TAIIAALPFSLVMLVVMAS 445 (453)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2333668988887776544
No 89
>PTZ00206 amino acid transporter; Provisional
Probab=92.99 E-value=28 Score=42.54 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHhcC-CCHHHHHHhhcCchhHHHHH
Q 000794 78 ARIAVVTG-KDLAQICGEEYDKWTCVFIG 105 (1281)
Q Consensus 78 ARLGVVTG-k~LAEicRe~Ygk~~~~~Lw 105 (1281)
+|..-.++ ++..|+.+.-+||+..++.-
T Consensus 112 ~~~~~~~~~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 112 GVAADKTNIRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHhccCCCCCHHHHHHHHhCHHHHHHHH
Confidence 44433343 47888888888988776543
No 90
>PRK15015 carbon starvation protein A; Provisional
Probab=92.79 E-value=38 Score=43.55 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=39.5
Q ss_pred hhHHHHhHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHhhcCchhHHH
Q 000794 45 WAVIIEGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 45 IaT~lQAGA~fGY--~LLWVLLLAtImaillQeLSARLGVV--TGk~LAEicRe~Ygk~~~~~ 103 (1281)
++--..| ++||| .+||+++ .++++-.+|.+.+=..-+ -||++.|++|++.|+..+.+
T Consensus 102 ivGPvlA-a~~GwlP~~LWIl~-G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 102 LVGPVLA-AQMGYLPGMIWLLA-GVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred cHHHHHH-HHHcchHHHHHHHH-cceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 3333333 48999 4888766 445555677776655444 49999999999999987654
No 91
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.78 E-value=4 Score=51.86 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 000794 280 FQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 327 (1281)
Q Consensus 280 l~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL 327 (1281)
+++-+..+.++ ..-+.+..+|+++++++|+|.+.++...|+|..-
T Consensus 358 Lq~dy~v~~~i---sl~p~fi~iGi~sttlfss~s~liGasrvL~ala 402 (945)
T KOG1288|consen 358 LQNDYDVMMHI---SLHPPFILIGILSTTLFSSMSGLIGASRVLEALA 402 (945)
T ss_pred hhhchhheeec---cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 34444445543 2345678899999999999999999999988773
No 92
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=92.16 E-value=41 Score=42.37 Aligned_cols=139 Identities=9% Similarity=0.049 Sum_probs=68.9
Q ss_pred hhhHHhhhhhcccCChhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHh-hcCchhHHHHH
Q 000794 29 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK--DLAQICGE-EYDKWTCVFIG 105 (1281)
Q Consensus 29 lGPGfLvSIAyIDPGnIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk--~LAEicRe-~Ygk~~~~~Lw 105 (1281)
+|.|++++.+.. +.+.==+|+--+|-++=+++++ ++.-+=||+.-+= ++|- +.+.-+-+ -+|--..|..|
T Consensus 60 IGTGLfvgsG~~----l~~aGP~g~li~y~i~G~~vy~--vm~sLGEma~~~P-~sGsF~~ya~rfvdpa~GFa~gWnYw 132 (541)
T COG0833 60 IGTGLFVGSGKA----LSQAGPAGLLIAYLIIGIMVYF--VMQSLGELAVFYP-VSGSFSTYATRFVDPAFGFALGWNYW 132 (541)
T ss_pred cccceeeecchh----hhccCcHHHHHHHHHHHHHHHH--HHHHHHHHHhhcC-CCCchhhhhhhhcCchHHHHHHHHHH
Confidence 677777655431 1111134556666655555544 3445668888888 6772 22222211 11111223233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-C-CchHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 000794 106 VQTELSVILLDLTMVLGIAHGLNLLM-G-VELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLG 179 (1281)
Q Consensus 106 I~aeLAIIasDIaEVIGtAIALnLLf-G-iPL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~ 179 (1281)
+.- +..++ .|++.+++-++.-+ . +|.++++++..+..+++=+++- +++--.|+.+..+=.++++.|++.
T Consensus 133 ~~w-~v~~~---~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~V-k~fGE~Efw~s~iKV~~ii~Fii~ 203 (541)
T COG0833 133 LNW-AVTLP---LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGV-KGFGETEFWFSSIKVLTIIGFIIL 203 (541)
T ss_pred HHH-HHHhh---HHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcc-cccceehHHHHHHHHHHHHHHHHH
Confidence 221 22222 35556666667665 3 4888887777666655544443 234445665544333334444433
No 93
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=91.32 E-value=50 Score=41.72 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=36.6
Q ss_pred HhHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHhhcCchhHHH
Q 000794 50 EGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 50 QAGA~fGY--~LLWVLLLAtImaillQeLSARLGVV--TGk~LAEicRe~Ygk~~~~~ 103 (1281)
.-+|+||| .+||+++ .++++-.+|.+-+=.--+ -||++.|+.+++.|+..+.+
T Consensus 75 vlAAq~G~Lp~~LWIl~-G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILL-GCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHH-hhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45789996 6888765 555555566554322221 49999999999999987654
No 94
>PRK09950 putative transporter; Provisional
Probab=90.89 E-value=52 Score=41.20 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC-----CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 000794 294 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL-----DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQ 368 (1281)
Q Consensus 294 ~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~l-----ri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQ 368 (1281)
|++. +..+..+...+...+|...++.+++..+-.. +.++...|+++.++..+-++.+. +.|. ++.. +=+
T Consensus 399 P~~~-i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll-~~gG-~l~~---lQ~ 472 (506)
T PRK09950 399 PAGK-LFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSIL-FTGA-SLDT---MKT 472 (506)
T ss_pred cHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHH-HhCC-cHHH---HHH
Confidence 4443 3333344444666677777888888776422 12333345555443322222222 3332 1221 112
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000794 369 VMVAIMLPSSVIPLFRVAS 387 (1281)
Q Consensus 369 VI~SL~LPFaLIPLL~LtN 387 (1281)
+.....+||.++.++...+
T Consensus 473 ~~ii~alP~~~i~~l~~~s 491 (506)
T PRK09950 473 TVVLTALPFLVILLIKVYG 491 (506)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2233568888877665544
No 95
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=90.15 E-value=53 Score=40.05 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHH
Q 000794 332 PGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMG 411 (1281)
Q Consensus 332 ~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILawli~ll 411 (1281)
..|.|+.+.-++.++-..+.+++ .+++..+.-+..+..+..++|++-.++++-..++ +.+.+..+|+..++
T Consensus 319 ~s~~r~~~itl~ll~~~~l~ai~--~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~-------~~~~~~~~~~~~~~ 389 (411)
T KOG1305|consen 319 FSGKRHFVITLLLLIFTFLLAIF--VPSIGTIFGFVGATSSTSISFILPALYYLKASKK-------KSREPLGALIFLIL 389 (411)
T ss_pred ccceehhHHHHHHHHHHHHHHHH--hccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc-------ccccchHHHHHHHH
Confidence 34555543333333333333333 1235555666666677777777767777777665 33334444444444
Q ss_pred HHHHHHHHHHHHHh
Q 000794 412 MLGLKLIFMVEMIF 425 (1281)
Q Consensus 412 Ii~LNIyfVv~~lf 425 (1281)
-+++.++-++.++.
T Consensus 390 ~~~~~i~~~~~~i~ 403 (411)
T KOG1305|consen 390 GVLLSIIGVAVMIY 403 (411)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 96
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=87.82 E-value=1.1e+02 Score=40.58 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=16.6
Q ss_pred HHHHhcccchhHHHHHhHhhhh
Q 000794 206 IMSLLGASMMPHNFYLHSSIVR 227 (1281)
Q Consensus 206 aVALIGATImPhNlYLHSaLVq 227 (1281)
..-++||++.|-.-.+.+++++
T Consensus 132 ~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 132 ASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHHHHhhhcCCcHHHHHHHHh
Confidence 4558899999987777777765
No 97
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=86.69 E-value=92 Score=38.62 Aligned_cols=75 Identities=7% Similarity=0.051 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCCchHHHHHHHHHHHHHHHH
Q 000794 338 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHKISQYHEFLVLITFMGMLG 414 (1281)
Q Consensus 338 LitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IM-GeyrnS~~~nILawli~llIi~ 414 (1281)
...|.+.++.+.++++. .+++..++-+..++....|-+++=|++.+.-..... |.++-.++.+++..+..++.++
T Consensus 364 ~~~R~~lVllt~~iA~~--iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v 439 (449)
T KOG1304|consen 364 YALRVFLVLLTFLIAVA--VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFV 439 (449)
T ss_pred HHHHHHHHHHHHHHHHH--CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHH
Confidence 45666666666666554 334555555555555555555555666554433333 5666666666554444433333
No 98
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=85.58 E-value=1.2e+02 Score=39.04 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=49.1
Q ss_pred HHhhhhhHHhhhhhc-ccCChhh-----HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcC
Q 000794 25 LVPAVLPVLLISIGY-VDPGKWA-----VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD 97 (1281)
Q Consensus 25 lLa~lGPGfLvSIAy-IDPGnIa-----T~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Yg 97 (1281)
.|+--.=.+|-++++ +|-||+- .+-.+|..| |+--+++..++++.+..|=.-+|-.|+++-....|+--|
T Consensus 36 ~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaF---LIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~P 111 (629)
T KOG3660|consen 36 NWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAF---LIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICP 111 (629)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchH---HHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhCh
Confidence 333333345777776 8999987 333444344 455567777888888888888999999999999886444
No 99
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=84.19 E-value=12 Score=44.41 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=56.2
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcC-chhHHHHH
Q 000794 286 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSG-AEGVYQLL 364 (1281)
Q Consensus 286 lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~~G-~~g~vqLL 364 (1281)
.++.++| ++.+.++=+.++..-++++++..-|+....++.+| +|.|.-.++. +..+.++.+.+ .+++..
T Consensus 71 ~~~~v~~-~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--lP~wiGali~-----i~~v~i~lfl~~vegi~t-- 140 (349)
T COG3949 71 ILKYVSG-PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--LPYWIGALII-----ILLVLILLFLGRVEGIIT-- 140 (349)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--ccHHHHHHHH-----HHHHHHHHHHhcccceee--
Confidence 4677777 67777888888899899988776666667777665 4677653322 12222333444 555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 000794 365 IFTQVMVAIMLPSSVIPLFRVASS 388 (1281)
Q Consensus 365 I~aQVI~SL~LPFaLIPLL~LtNs 388 (1281)
++++.+||..+.++..++.
T Consensus 141 -----vn~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 141 -----VNGIITPFLIIILVLVTLS 159 (349)
T ss_pred -----eheeHHHHHHHHHHHHHHH
Confidence 3466788888876665543
No 100
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=83.37 E-value=1.4e+02 Score=37.71 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhC--C---CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 000794 300 FVLVLFFSNQIIAVNWNLSGQVVLQDFLR--L---DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIM 374 (1281)
Q Consensus 300 FAIGLLAAGqSSTITgTlAGQ~VmeGFL~--l---ri~~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~ 374 (1281)
..+..+...+...+|...++.+++..+-. . ..++...|+++-++..+-++.+. +.|.-+..| .+.....
T Consensus 407 ~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll-~~GGl~~lQ-----t~sii~a 480 (504)
T PRK03356 407 TMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLL-ALGGLKPIQ-----TAIIAGG 480 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HhcCHHHHH-----HHHHHHH
Confidence 33333344466677777777777777632 1 12333345555443322222222 333111222 2223366
Q ss_pred HHHHHHHHHHHHh
Q 000794 375 LPSSVIPLFRVAS 387 (1281)
Q Consensus 375 LPFaLIPLL~LtN 387 (1281)
+||.++-++...+
T Consensus 481 lPf~~i~~l~~~s 493 (504)
T PRK03356 481 CPLFFVNIMVTLS 493 (504)
T ss_pred HHHHHHHHHHHHH
Confidence 8998888776655
No 101
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=82.75 E-value=81 Score=39.16 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhcCC
Q 000794 414 GLKLIFMVEMIFGNS 428 (1281)
Q Consensus 414 ~LNIyfVv~~lfg~s 428 (1281)
.--+-|+++.+..+.
T Consensus 233 Ygi~RF~iEflR~d~ 247 (460)
T PRK13108 233 YCAGRFCVELLRDDP 247 (460)
T ss_pred HHHHHHHhhhhccCc
Confidence 334566777776544
No 102
>PLN00150 potassium ion transporter family protein; Provisional
Probab=81.23 E-value=1.6e+02 Score=38.80 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.3
Q ss_pred ccHHHhhcccceeccc
Q 000794 710 ITQEARAKKLDLVLGV 725 (1281)
Q Consensus 710 ~t~~a~~~~~~~~lg~ 725 (1281)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00150 713 FLNKCKEAGVVYILGN 728 (779)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4688999999999983
No 103
>PLN00149 potassium transporter; Provisional
Probab=80.23 E-value=1.9e+02 Score=38.33 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.2
Q ss_pred ccHHHhhcccceeccc
Q 000794 710 ITQEARAKKLDLVLGV 725 (1281)
Q Consensus 710 ~t~~a~~~~~~~~lg~ 725 (1281)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00149 713 ELMEAREAGMAYILGH 728 (779)
T ss_pred HHHHHHHcCcEEEecC
Confidence 4688999999999983
No 104
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=77.87 E-value=42 Score=39.70 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhcC
Q 000794 340 IRIISIVPALYCVWTSG 356 (1281)
Q Consensus 340 tRlIAIIPALiVai~~G 356 (1281)
.....++|.+.+..+..
T Consensus 131 ~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 131 WLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33445667776655543
No 105
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=75.26 E-value=53 Score=42.16 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=44.1
Q ss_pred hhCCchH-----HHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCCcccccceec---c
Q 000794 130 LMGVELS-----TCVFLAAADAILFPFFAGQLENYKA-----KLLWICTAGIILLSYVLGVLISQPEIPLSVNGML---T 196 (1281)
Q Consensus 130 LfGiPL~-----~GVLITavdt~lLL~lgsy~g~RKl-----E~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GLv---P 196 (1281)
+||+|.. ..|+...+.+|++-++.++ .+|. +.++.-++ .+++++.+.+++..|=..-+-+++- -
T Consensus 205 ~fGipv~~~~Y~~sViPiil~v~~~s~iEk~--l~K~iP~~l~~i~~P~l-tlli~~pl~l~viGPig~~i~~~l~~~i~ 281 (627)
T PRK09824 205 FLGIPVTLLNYSSSVIPIIFSAWLCSILERR--LNAWLPSAIKNFFTPLL-CLMVIVPLTFLLIGPLATWLSELLAAGYQ 281 (627)
T ss_pred ecceeeeecCCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4677653 2355556666666555432 2332 33333332 3455566666667774433333321 1
Q ss_pred ccCCChHHHHHHHhcccchhHHHH-HhHhhh
Q 000794 197 KFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 226 (1281)
Q Consensus 197 ~lp~~sl~~aVALIGATImPhNlY-LHSaLV 226 (1281)
.+-.-.-+++.+++|+.--|-.++ +|-+++
T Consensus 282 ~l~~~~~~i~g~i~g~~~~~lV~~G~H~~l~ 312 (627)
T PRK09824 282 WLYQAVPAFAGAVMGAFWQVFVIFGLHWGLV 312 (627)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccchhhH
Confidence 111112234456777654444444 565543
No 106
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=73.38 E-value=11 Score=46.26 Aligned_cols=104 Identities=11% Similarity=0.100 Sum_probs=53.9
Q ss_pred cCChhhHHHHhHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 000794 41 DPGKWAVIIEGGAHFGF-DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFIGVQTELSVILLDL 117 (1281)
Q Consensus 41 DPGnIaT~lQAGA~fGY-~LLWVLLLAtImaillQeLSARLGVV--TGk~LAEicRe~Ygk~~~~~LwI~aeLAIIasDI 117 (1281)
=|+.+.|+.+---+||- .-.|-..-+|+=-+++-.++..+--+ .-++..|+.|.+||+..-.++.+++....|.-..
T Consensus 68 W~sTlLtSa~~ayqyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVta 147 (667)
T KOG2348|consen 68 WASTLLTSAGKAYQYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVTA 147 (667)
T ss_pred hhHHHHhhccchhhhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHHH
Confidence 34555555544444442 23555555555555555555554333 3567999999999986443222222222222111
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHH
Q 000794 118 TMVLGIAHGLNLLMGVELSTCVFLAAA 144 (1281)
Q Consensus 118 aEVIGtAIALnLLfGiPL~~GVLITav 144 (1281)
.-+.|....++.+.|......+++.=+
T Consensus 148 MLL~gGSavisalTGmn~vAa~FLlPl 174 (667)
T KOG2348|consen 148 MLLLGGSAVISALTGMNTVAACFLLPL 174 (667)
T ss_pred HHHhCchhhhhhhccchhhhhhheeee
Confidence 123355555677777776655544333
No 107
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=71.23 E-value=3e+02 Score=35.10 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 361 YQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMI 424 (1281)
Q Consensus 361 vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILawli~llIi~LNIyfVv~~l 424 (1281)
...+.+.-.-.++.+|+.++-++. ..++ -+.+.|++.+=.+..++++++.++++...+
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~----~~~l--pk~g~wm~~~k~~~G~~ll~~~~~ll~~~~ 383 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFG----NKLL--PKSGPWMNQVKTAFGFVLLALPVFLLERVL 383 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----Hhhc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444456777887776652 1233 267888877777778888888888776443
No 108
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=69.35 E-value=3.4e+02 Score=35.08 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccC-HHHH---------HHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000794 255 IYMVNYVLMNSAANLFYSTGLVLLT-FQDA---------MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 324 (1281)
Q Consensus 255 sfLINlaIViVaAavLygtGi~V~t-l~dA---------a~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~Vme 324 (1281)
+.++++.++...|.+.|+.+.+... ...+ .++++..=.+.+-.++|-+.|++.|+.|++.+. +.++.
T Consensus 374 sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~---e~iit 450 (629)
T KOG3659|consen 374 SGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGI---EAIIT 450 (629)
T ss_pred HHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhH---HHHhc
Confidence 3456677777788887775544321 0000 123333222344446777788888887777544 34555
Q ss_pred hhhCCCcCC--chHHHHHHH-HHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhccccc
Q 000794 325 DFLRLDIPG--WLHHATIRI-ISIVPALYCVWT-SGAEGVYQLLIFTQVMVAIMLPSSVIP--------LFRVASSRQIM 392 (1281)
Q Consensus 325 GFL~lri~~--w~RrLitRl-IAIIPALiVai~-~G~~g~vqLLI~aQVI~SL~LPFaLIP--------LL~LtNsR~IM 392 (1281)
+..+..... ..|.+++.. +++.+.+..... .|......+++.--+..+++.+..+.. +=.|..|-+.|
T Consensus 451 ~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~M 530 (629)
T KOG3659|consen 451 PLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQM 530 (629)
T ss_pred cccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 554322111 112222222 222232222211 121122344444444444444433322 23466777778
Q ss_pred cCCCchHHHHHH
Q 000794 393 GVHKISQYHEFL 404 (1281)
Q Consensus 393 GeyrnS~~~nIL 404 (1281)
=.|++++.+++.
T Consensus 531 lg~~P~~yw~v~ 542 (629)
T KOG3659|consen 531 LGFRPGWYWRVC 542 (629)
T ss_pred hCCCCchhHHHH
Confidence 888999987764
No 109
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=68.42 E-value=2.5e+02 Score=36.11 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=5.5
Q ss_pred HHHHHHhccc
Q 000794 204 FSIMSLLGAS 213 (1281)
Q Consensus 204 ~~aVALIGAT 213 (1281)
..+.+++|+.
T Consensus 281 ~i~~~iig~l 290 (610)
T TIGR01995 281 WLAGALLAAL 290 (610)
T ss_pred HHHHHHHHHH
Confidence 4455566654
No 110
>PLN00151 potassium transporter; Provisional
Probab=66.78 E-value=2.3e+02 Score=37.87 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.0
Q ss_pred ccHHHhhcccceeccc
Q 000794 710 ITQEARAKKLDLVLGV 725 (1281)
Q Consensus 710 ~t~~a~~~~~~~~lg~ 725 (1281)
.-++||.+..=.++|=
T Consensus 786 ~l~~a~e~Gv~yilG~ 801 (852)
T PLN00151 786 FIREAKESGVVYLLGH 801 (852)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4678999999999983
No 111
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=65.96 E-value=1.7e+02 Score=36.71 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=8.6
Q ss_pred cCCCCCCcccccc
Q 000794 474 RNNAPDWSWEFQR 486 (1281)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (1281)
..|...|-|.+=.
T Consensus 482 ~~Edy~WwWrSF~ 494 (521)
T PF02990_consen 482 CAEDYRWWWRSFL 494 (521)
T ss_pred hccccceeeeeeh
Confidence 3566888887643
No 112
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=64.11 E-value=0.24 Score=57.12 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000794 337 HATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 389 (1281)
Q Consensus 337 rLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR 389 (1281)
+...|++.++++.+++.+. +++..++.+...+....+-|.+=+++++...+
T Consensus 323 ~~~~~~~~~~~~~~iA~~v--p~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 323 RYLIRIILVLLSFLIAIFV--PNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred eeeeecchhhhhhhhhhhc--cchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 3444555555555555432 23555666666655555555554555554433
No 113
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=60.66 E-value=3.8e+02 Score=32.49 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 000794 446 FAVFLITTFTSLCLMLWLATTPLRS 470 (1281)
Q Consensus 446 ~~vl~~~~~~yl~f~lyL~~~pl~s 470 (1281)
.++++++.++|.++.-|+...+.+.
T Consensus 316 ~lv~lPivL~Y~~~~Y~vF~gk~~~ 340 (346)
T COG1294 316 ALVFLPIVLAYTIWSYRVFRGKITY 340 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 3344556667777777776655543
No 114
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=58.75 E-value=4.9e+02 Score=33.26 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=22.3
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 000794 286 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 327 (1281)
Q Consensus 286 lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL 327 (1281)
.+....+.++-..+++..+=+..|||.-+..+--.+..+|.+
T Consensus 166 ~i~~l~~~~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~gli 207 (533)
T COG1283 166 FIAKLSDDPIVALLIGALLTALIQSSLAAIGILLSLTSQGLI 207 (533)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 344444445555566666666667776555544344445543
No 115
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=58.70 E-value=4.7e+02 Score=32.96 Aligned_cols=39 Identities=15% Similarity=-0.067 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 000794 103 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLA 142 (1281)
Q Consensus 103 ~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLIT 142 (1281)
.+|+.-.++.++.-+..+.-.-.... +.+=|.+++.+.+
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~ 52 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQA 52 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 46766667777766663332222111 2344666665443
No 116
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=56.69 E-value=54 Score=35.02 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=5.7
Q ss_pred HHHHHhhCCc
Q 000794 125 HGLNLLMGVE 134 (1281)
Q Consensus 125 IALnLLfGiP 134 (1281)
.++.+|||..
T Consensus 115 ~~fa~lfgg~ 124 (193)
T PF06738_consen 115 AAFALLFGGS 124 (193)
T ss_pred HHHHHHHCCC
Confidence 3455578754
No 117
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=56.12 E-value=5.4e+02 Score=32.92 Aligned_cols=21 Identities=14% Similarity=0.005 Sum_probs=14.0
Q ss_pred HHHHHhhcchhHHHHHHHHHH
Q 000794 147 ILFPFFAGQLENYKAKLLWIC 167 (1281)
Q Consensus 147 ~lLL~lgsy~g~RKlE~L~~~ 167 (1281)
+++||..+++|-.|+.+++.-
T Consensus 140 Lv~LF~iQ~~GT~~ig~~FgP 160 (534)
T PF02705_consen 140 LVGLFAIQRFGTAKIGKLFGP 160 (534)
T ss_pred HHHHHHHHhhhhhHHHHHHhH
Confidence 344555567788888777653
No 118
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=54.80 E-value=6.3e+02 Score=33.31 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHH
Q 000794 146 AILFPFFAGQLENYKAKLLWIC 167 (1281)
Q Consensus 146 t~lLL~lgsy~g~RKlE~L~~~ 167 (1281)
.+++||+.++.|-.|+.++++-
T Consensus 175 ILv~LF~iQ~~GT~kvg~~FgP 196 (688)
T TIGR00794 175 ILVLLFLIQRFGTAKVGFTFAP 196 (688)
T ss_pred HHHHHHHHhccccHHHhhhhhh
Confidence 4455566677788898877654
No 119
>PRK03612 spermidine synthase; Provisional
Probab=53.58 E-value=2.9e+02 Score=34.77 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHH
Q 000794 49 IEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQIC 92 (1281)
Q Consensus 49 lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVV-TGk~LAEic 92 (1281)
+.+.+-.+|.++|.=+++.+++-.+...+.=+++. .|..+...+
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l 69 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALL 69 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788899998888766655444444444332 344444333
No 120
>PRK11469 hypothetical protein; Provisional
Probab=53.50 E-value=2.4e+02 Score=30.97 Aligned_cols=28 Identities=4% Similarity=0.160 Sum_probs=20.3
Q ss_pred hCCchHHHHHHHHHHHHHHHHhhcchhH
Q 000794 131 MGVELSTCVFLAAADAILFPFFAGQLEN 158 (1281)
Q Consensus 131 fGiPL~~GVLITavdt~lLL~lgsy~g~ 158 (1281)
.|.|.+..++++++.++++.+++-|.|+
T Consensus 129 ~g~~~~~~~~~ig~~s~~~~~~G~~lG~ 156 (188)
T PRK11469 129 LQVNIIATALAIGCATLIMSTLGMMVGR 156 (188)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888776654444
No 121
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=52.64 E-value=1.9e+02 Score=36.71 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=36.2
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000794 285 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 330 (1281)
Q Consensus 285 ~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lr 330 (1281)
..|.....+|+..++.++++=+.-|||+-|..+...+|-.|++..+
T Consensus 38 ~~L~~~t~np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl~ 83 (533)
T COG1283 38 KILARFTSNPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSLK 83 (533)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccchh
Confidence 3455545567888888888888999999999999889999997543
No 122
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=49.14 E-value=1.4e+02 Score=33.12 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCC-CchHHHHHHHHHHHHHHHHHH
Q 000794 369 VMVAIMLPSSVIPLFRVASSRQIMGVH-KISQYHEFLVLITFMGMLGLK 416 (1281)
Q Consensus 369 VI~SL~LPFaLIPLL~LtNsR~IMGey-rnS~~~nILawli~llIi~LN 416 (1281)
++.+++|||-.+-+.+-.. -.+|..- .+...+-+++.+..++.+.+|
T Consensus 87 ~iAs~llP~PsLVIaYCl~-mqi~~~~~~~~~gMsIvcv~~Si~ti~~~ 134 (189)
T PF05313_consen 87 IIASLLLPFPSLVIAYCLS-MQIYNPGANNNVGMSIVCVIMSIITIIVN 134 (189)
T ss_pred HHHHHHcCccHHHHHHHHH-heeecCCCcceehhHHHHHHHHHHHHHHH
Confidence 5678889985554443333 3344332 233334445444444444443
No 123
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.81 E-value=51 Score=45.40 Aligned_cols=9 Identities=33% Similarity=0.398 Sum_probs=4.3
Q ss_pred hhCCchHHH
Q 000794 130 LMGVELSTC 138 (1281)
Q Consensus 130 LfGiPL~~G 138 (1281)
+||+.-|+.
T Consensus 78 LFGl~AYLL 86 (1355)
T PRK10263 78 IFGVMAYTI 86 (1355)
T ss_pred HHhHHHHHH
Confidence 456544433
No 124
>PLN00148 potassium transporter; Provisional
Probab=47.89 E-value=8.4e+02 Score=32.71 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=15.0
Q ss_pred HHHHHHhhcchhHHHHHHHHHH
Q 000794 146 AILFPFFAGQLENYKAKLLWIC 167 (1281)
Q Consensus 146 t~lLL~lgsy~g~RKlE~L~~~ 167 (1281)
+++.||..+++|-.|+.++++-
T Consensus 204 ILv~LF~vQ~~GT~kVg~~FgP 225 (785)
T PLN00148 204 ILVGLFALQHCGTHRVAFMFAP 225 (785)
T ss_pred HHHHHHHHhccccHHHHhhhhh
Confidence 3445556677788998887754
No 125
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=47.82 E-value=7.1e+02 Score=31.85 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=57.5
Q ss_pred HHHHhhhhhHHhhhhhc------ccCChhhHHHHhHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000794 23 YRLVPAVLPVLLISIGY------VDPGKWAVIIEGGA-----HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQI 91 (1281)
Q Consensus 23 rklLa~lGPGfLvSIAy------IDPGnIaT~lQAGA-----~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEi 91 (1281)
.-++..+-+|++.++-. .+|=.-.+-..+.. .+|+.+ +.+++++.-++|.+...+-+ ...
T Consensus 52 ~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~~---~~~~tllaGv~~i~~G~lRL------G~l 122 (554)
T COG0659 52 AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLAL---AFLATLLAGVFQILLGLLRL------GRL 122 (554)
T ss_pred HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh------hhh
Confidence 34666777777766532 23333222222222 344433 34556666677777654433 112
Q ss_pred HHhhcCchhHHHHHHHHHHH--HHHHHHHHHHHHHHH-------HHHhh-CC-chHHHHHHHHHHHHHHHHhhcc
Q 000794 92 CGEEYDKWTCVFIGVQTELS--VILLDLTMVLGIAHG-------LNLLM-GV-ELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 92 cRe~Ygk~~~~~LwI~aeLA--IIasDIaEVIGtAIA-------LnLLf-Gi-PL~~GVLITavdt~lLL~lgsy 155 (1281)
+ +..|+.+ +.+.+..++ ++..++.++.|.... +..++ .. +.-+..++.++.+++++++..+
T Consensus 123 i-~fip~pV--l~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~ 194 (554)
T COG0659 123 I-RFIPRPV--LIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPR 194 (554)
T ss_pred h-hhccHHH--HHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccc
Confidence 2 2334332 344555444 445677777765431 22222 22 3333444455556666665543
No 126
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=47.53 E-value=5.8e+02 Score=32.07 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=42.6
Q ss_pred hhCCchH-----HHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCCccccccee---cc
Q 000794 130 LMGVELS-----TCVFLAAADAILFPFFAGQLENYKA-----KLLWICTAGIILLSYVLGVLISQPEIPLSVNGM---LT 196 (1281)
Q Consensus 130 LfGiPL~-----~GVLITavdt~lLL~lgsy~g~RKl-----E~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GL---vP 196 (1281)
+||+|.. ..|+...+.+|++-++.+ ..||. +.++.=++ .+++++.+.+++..|=..-+-+++ +-
T Consensus 207 ~~Gipi~~~~Y~ssViPiil~v~~~s~vek--~~~K~~P~~l~~i~~P~l-tlli~~pl~l~viGPig~~i~~~i~~~i~ 283 (472)
T PRK09796 207 FALIPVTAVKYTYTVIPALVMTWCLSYIER--WVDRITPAVTKNFLKPML-IVLIAAPLAILLIGPIGIWIGSAISALVY 283 (472)
T ss_pred ecCceeeecCCCcchHHHHHHHHHHHHHHH--HHHHhCHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3576543 245555555566655543 23332 33333332 446666667777777433222222 11
Q ss_pred ccCCChHHHHHHHhcccchhHHHH-HhHhhh
Q 000794 197 KFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 226 (1281)
Q Consensus 197 ~lp~~sl~~aVALIGATImPhNlY-LHSaLV 226 (1281)
.+-...-++..+++|+.--|-.++ +|-+++
T Consensus 284 ~l~~~~~~i~g~i~g~~~~~lV~~G~H~~~~ 314 (472)
T PRK09796 284 TIHGYLGWLSVAIMGALWPLLVMTGMHRVFT 314 (472)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhccchhhh
Confidence 111112234556666543333333 455443
No 127
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=46.58 E-value=5.9e+02 Score=31.64 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CchHHHHHHHHHHHHHH
Q 000794 88 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILF 149 (1281)
Q Consensus 88 LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfG-iPL~~GVLITavdt~lL 149 (1281)
|.+..+..+|+...+++.+.+.+|+..+-++-+..+|-=++-+++ ++....+.++.+..+++
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~i 325 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFII 325 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 666777789998889999999999999988877777777888887 57777777776666555
No 128
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=45.59 E-value=8.8e+02 Score=32.25 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 000794 367 TQVMVAIMLPSSVIPLFRVAS 387 (1281)
Q Consensus 367 aQVI~SL~LPFaLIPLL~LtN 387 (1281)
.-++.+. +-|.++|--++..
T Consensus 267 ~e~~ia~-~lFll~P~~~~~~ 286 (764)
T TIGR02865 267 YEALIAT-LLFLLIPNKIYKK 286 (764)
T ss_pred HHHHHHH-HHHHHhhHHHHHH
Confidence 3444444 3366777554433
No 129
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=45.36 E-value=3.9e+02 Score=36.88 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000794 370 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFM 420 (1281)
Q Consensus 370 I~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILawli~llIi~LNIyfV 420 (1281)
+..+.+|.+++.+++++ .+..--.-+.+.+.+.+.|++.++++.+.+.++
T Consensus 114 ~~~a~~~~~~~~~L~~~-R~~F~~~~~~~s~~~~~~~l~~~~~~~~~~~~~ 163 (1094)
T PRK02983 114 IIGFAVHVVAIVLLVLA-RREFPARVRRGALRKALAVLVGGLAVGILVGWG 163 (1094)
T ss_pred HHHHHHHHHHHHHHHHH-HhhccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666554 443333333466677777877777765544443
No 130
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=45.21 E-value=1.1e+02 Score=35.03 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=15.3
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHhhcchh
Q 000794 125 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 157 (1281)
Q Consensus 125 IALnLLfGiPL~~GVLITavdt~lLL~lgsy~g 157 (1281)
.++..|+| .-|.-++++++..++...+..|..
T Consensus 137 ~~f~~l~g-G~w~d~~iaf~~~~~~~~~~~~l~ 168 (250)
T COG2966 137 AAFALLFG-GGWLDFLIAFFAGLLGFLLRQYLS 168 (250)
T ss_pred HHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777 334444444444444444444433
No 131
>PTZ00243 ABC transporter; Provisional
Probab=45.11 E-value=1.2e+03 Score=33.64 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCHHHHHHhh
Q 000794 75 YLSARIAVVTGKDLAQICGEE 95 (1281)
Q Consensus 75 eLSARLGVVTGk~LAEicRe~ 95 (1281)
.++.|+|+-....|...+.++
T Consensus 307 ~~~~r~~~~~r~~L~~~if~K 327 (1560)
T PTZ00243 307 YISIRCGLQYRSALNALIFEK 327 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556676765555555555443
No 132
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=44.64 E-value=2.5e+02 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=20.4
Q ss_pred hCCchHHHHHHHHHHHHHHHHhhcchhH
Q 000794 131 MGVELSTCVFLAAADAILFPFFAGQLEN 158 (1281)
Q Consensus 131 fGiPL~~GVLITavdt~lLL~lgsy~g~ 158 (1281)
.|.+.+..++++++.++++.+.+-+.|.
T Consensus 152 ~g~~~~~~~~~igivs~i~~~~G~~lG~ 179 (206)
T TIGR02840 152 LGLNPLATSILVAVMSFIFVSLGLFLGK 179 (206)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888777655443
No 133
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=44.38 E-value=5.5e+02 Score=29.53 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=20.0
Q ss_pred hCC-chHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 000794 131 MGV-ELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGI 171 (1281)
Q Consensus 131 fGi-PL~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~l 171 (1281)
-|. |.++.++.+.+.+.+-+++.+...++..-.+...++++
T Consensus 46 ~G~~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~ 87 (244)
T PF07907_consen 46 NGYNPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGV 87 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 477 55666655555555555554432233334444444433
No 134
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=42.25 E-value=3.2e+02 Score=32.39 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHhh
Q 000794 70 AIFCQYLSARIAVVTGKDLAQICGEE 95 (1281)
Q Consensus 70 aillQeLSARLGVVTGk~LAEicRe~ 95 (1281)
...++.-+.-+..-|...+.+-.|+.
T Consensus 169 ~~~~~~GA~~l~~kt~g~l~~rar~~ 194 (328)
T PF02322_consen 169 ALFALHGAVFLALKTEGELRERARRW 194 (328)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33455567777778888888877764
No 135
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=42.02 E-value=5.6e+02 Score=30.18 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhCCch
Q 000794 120 VLGIAHGLNLLMGVEL 135 (1281)
Q Consensus 120 VIGtAIALnLLfGiPL 135 (1281)
+.|.++-++.+|++++
T Consensus 44 v~Gis~il~~l~~~~~ 59 (289)
T COG1284 44 VTGLSLILLALFGIPP 59 (289)
T ss_pred hhhHHHHHHHHhccch
Confidence 5677777778888633
No 136
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=41.63 E-value=4e+02 Score=33.21 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 000794 88 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILF 149 (1281)
Q Consensus 88 LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lL 149 (1281)
+...+...+|++..+++.+...+|+..+-++.+.+.|.=++-++.++..+.++++.+..+++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~l 328 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVV 328 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 45567778899888888888889999888888888888777776777666666666655554
No 137
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=41.27 E-value=9.3e+02 Score=32.97 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccceeccccCCChHHHHHHHh--cc
Q 000794 135 LSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLL--GA 212 (1281)
Q Consensus 135 L~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GLvP~lp~~sl~~aVALI--GA 212 (1281)
|.=|+++..+.+++| +++. |..-...+.+-.-|+++|++.-+.. .+ ++- ++-+++.+++|++ ||
T Consensus 340 LiEg~vlV~iVl~lF--Lgn~---RsAli~~~~lPLS~li~f~~M~~~g---i~--~Nl----MSLGGlAIaiG~~VD~A 405 (1027)
T COG3696 340 LIEGSVLVIIVLALF--LGNF---RSALIVIISLPLSLLIAFIVMNFFG---IS--ANL----MSLGGLAIAIGAMVDAA 405 (1027)
T ss_pred HHhhhHHHHHHHHHH--hccH---HHHHHHHHHHHHHHHHHHHHHHHcC---Cc--chh----hcccchheeeeeeecce
Confidence 344555555544444 4553 4433333333344566666543321 11 110 1223444455554 67
Q ss_pred cchhHHHHHh
Q 000794 213 SMMPHNFYLH 222 (1281)
Q Consensus 213 TImPhNlYLH 222 (1281)
+|+--|.|=|
T Consensus 406 IV~vEN~~r~ 415 (1027)
T COG3696 406 IVVVENAHRR 415 (1027)
T ss_pred EEeehhHHHH
Confidence 8888888754
No 138
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=41.16 E-value=6.8e+02 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHH
Q 000794 282 DAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVN 314 (1281)
Q Consensus 282 dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTIT 314 (1281)
+-..+.++.+| +...++..+..+...+..+..
T Consensus 73 ~~~~~~~~~~G-~~~~~li~~s~~~~~~~~~~a 104 (415)
T COG0814 73 SITSLVEDYLG-KKGGILIGLSYFFALYGLLVA 104 (415)
T ss_pred cHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHH
Confidence 34445788887 556666666666665555443
No 139
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=40.13 E-value=1.3e+02 Score=34.55 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=15.9
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000794 122 GIAHGLNLLMGVELSTCVFLAAADAILFP 150 (1281)
Q Consensus 122 GtAIALnLLfGiPL~~GVLITavdt~lLL 150 (1281)
+++.++...|+.|.|+++++.++..++++
T Consensus 32 s~~~a~~~~~~~~~~~ai~~glvwgl~I~ 60 (301)
T PF14362_consen 32 SGGYALYTVFGGPVWAAIPFGLVWGLVIF 60 (301)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34455555677776666655544444433
No 140
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=39.48 E-value=3.8e+02 Score=30.17 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC
Q 000794 338 ATIRIISIVPALYCVWTSGAE-GVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHK 396 (1281)
Q Consensus 338 LitRlIAIIPALiVai~~G~~-g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IM-Geyr 396 (1281)
.+..++.++|.+.+.+..-.. ...+ ...-|....+.+|..+.-+..+..+++-. |.|+
T Consensus 14 ~i~~l~~i~Pl~~~~l~~~~~~~y~~-~~~~n~w~~~~lP~~iaii~~~~~~~E~~~~~~k 73 (241)
T TIGR03732 14 FSKKLIWIAPIIFLLLAFLLSPSYFQ-YATFNWWYVIFLPGMIALICALLHKKEKKASNYR 73 (241)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 344555566766654321000 1111 11223344568999887777776555544 5555
No 141
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.65 E-value=5.7e+02 Score=28.14 Aligned_cols=50 Identities=8% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhcccccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 372 AIMLPSSVIPLFRVASSRQIMG-VHKISQYHEFLVLITFMGMLGLKLIFMVEMI 424 (1281)
Q Consensus 372 SL~LPFaLIPLL~LtNsR~IMG-eyrnS~~~nILawli~llIi~LNIyfVv~~l 424 (1281)
++...++++-+.++.... +. ..|.+.+ +.+.+.+.++++.+-++.+...+
T Consensus 120 ~i~~G~~~~~~~~~i~~~--~~~~~r~~~~-k~~~~~~~~~~~w~~~~~~~~~l 170 (206)
T PF06570_consen 120 SIVGGLVFYFIFKYIYPY--KKKKKRPSWW-KYILISVLAMVLWIVIFVLTSFL 170 (206)
T ss_pred HHHHHHHHHHHHHHHhcc--cccccccHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444432 23 2344444 43333333334444444444443
No 142
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=37.90 E-value=4.5e+02 Score=31.90 Aligned_cols=70 Identities=9% Similarity=0.260 Sum_probs=45.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhC-CCcCCchHHHHHHHHHHHHHHHHH------------HhcCchhHHHHHHHHHHH
Q 000794 304 LFFSNQIIAVNWNLSGQVVLQDFLR-LDIPGWLHHATIRIISIVPALYCV------------WTSGAEGVYQLLIFTQVM 370 (1281)
Q Consensus 304 LLAAGqSSTITgTlAGQ~VmeGFL~-lri~~w~RrLitRlIAIIPALiVa------------i~~G~~g~vqLLI~aQVI 370 (1281)
++++.++|.+.+.| +|..++ -+.+-|.|.+-.-.+.++.+++.. +|.|-+..+.++++.|++
T Consensus 188 vl~~c~~SgfAgvY-----fEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~ 262 (345)
T KOG2234|consen 188 VLVACFLSGFAGVY-----FEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAV 262 (345)
T ss_pred HHHHHHHHHHHHHH-----HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhc
Confidence 44555666665553 344443 246679998766566666666555 456767788999999999
Q ss_pred HHHHHHHH
Q 000794 371 VAIMLPSS 378 (1281)
Q Consensus 371 ~SL~LPFa 378 (1281)
+++..-++
T Consensus 263 gGLlvs~v 270 (345)
T KOG2234|consen 263 GGLLVSLV 270 (345)
T ss_pred cchhHHHH
Confidence 99866443
No 143
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=37.55 E-value=2.4e+02 Score=29.85 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=27.0
Q ss_pred ccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHH
Q 000794 277 LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 317 (1281)
Q Consensus 277 V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTl 317 (1281)
+.++..+-..|--+. |++.+.+|.|.|.+++++.+...+
T Consensus 75 Lnn~rymWNilMYaI--Py~L~Ala~GFlv~~~~~p~~~~i 113 (141)
T PRK13743 75 LNNFRYMWNILMYVI--PYTLWALAAGFLVAGVRNPLCELI 113 (141)
T ss_pred hhhHHHHHHHHHHHH--HHHHHHHHhchhhhhhhhHHHHHH
Confidence 445666655554333 778888889999999888875443
No 144
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=36.85 E-value=8.1e+02 Score=30.97 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHHHhhhcCCccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHH
Q 000794 265 SAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIIS 344 (1281)
Q Consensus 265 VaAavLygtGi~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lri~~w~RrLitRlIA 344 (1281)
..|.-++..|. .|..| .++.-|+++..+.+-++..+.....-...-..++..+++.+++++ .|.-. .+++
T Consensus 119 ~~a~~lrr~g~--~T~~d---~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~--~~~~i---ii~~ 188 (549)
T TIGR02711 119 LIAERLRNLGR--YTFAD---VASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLN--YHVAV---VLVG 188 (549)
T ss_pred HHHHHHHHcCC--ccHHH---HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH---HHHH
Confidence 34555554442 34444 466778766666665554444333223333445566778887653 33221 1222
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 000794 345 IVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSV 379 (1281)
Q Consensus 345 IIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaL 379 (1281)
++-+++ +.+.|. .-..++|++|++.+=+.+
T Consensus 189 ~i~~~Y-t~~GGm----~av~~td~iQ~~im~~g~ 218 (549)
T TIGR02711 189 ILMVMY-VLFGGM----LATTWVQIIKAVLLLFGA 218 (549)
T ss_pred HHHHHH-HHhhhh----HHHHHHHHHHHHHHHHHH
Confidence 222222 233332 235577777776554433
No 145
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=36.64 E-value=1.2e+03 Score=31.13 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHH--HHHHhccccccCCC
Q 000794 368 QVMVAIMLPSSVIPL--FRVASSRQIMGVHK 396 (1281)
Q Consensus 368 QVI~SL~LPFaLIPL--L~LtNsR~IMGeyr 396 (1281)
.|+.=+.|||.++.+ -+++-+-.++=.|.
T Consensus 569 sviaPlILpF~lvyF~l~y~vyr~ql~yvy~ 599 (728)
T KOG1134|consen 569 SVIAPLILPFGLVYFCLAYLVYRYQLIYVYN 599 (728)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhheeec
Confidence 355557788887653 34544444444443
No 146
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=36.25 E-value=6.8e+02 Score=28.31 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhH
Q 000794 367 TQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPF 446 (1281)
Q Consensus 367 aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILawli~llIi~LNIyfVv~~lfg~s~w~~~l~~~~~~~~~~~~ 446 (1281)
+-++.++.--|+...+.++..+..--...|.+.| +.++.+....++-+-++++-.++ . +.-+..++-
T Consensus 129 tlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~-K~~lv~~~sm~lWi~v~i~t~~l-P-----------tslN~~L~p 195 (226)
T COG4858 129 TLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW-KYLLVAVLSMLLWIAVMIATVFL-P-----------TSLNPQLPP 195 (226)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH-HHHHHHHHHHHHHHHHHHHHhhC-C-----------CcCCcCCch
Confidence 3355566667777777777665433224455554 55555544444445455332222 1 111223444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000794 447 AVFLITTFTSLCLMLWLA 464 (1281)
Q Consensus 447 ~vl~~~~~~yl~f~lyL~ 464 (1281)
+.+.++..+.+++=.||=
T Consensus 196 i~l~IiGav~lalRfylk 213 (226)
T COG4858 196 IALTIIGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566667777777763
No 147
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=36.03 E-value=1.1e+03 Score=30.44 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=11.3
Q ss_pred HHHHHHHhcccchhHHHH
Q 000794 203 AFSIMSLLGASMMPHNFY 220 (1281)
Q Consensus 203 l~~aVALIGATImPhNlY 220 (1281)
++.+.|++-+.++|..++
T Consensus 193 ~~~~rg~~~~~~~~~~~~ 210 (679)
T TIGR02916 193 VWPARGLVAALVVPLIAV 210 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777777443
No 148
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=35.57 E-value=12 Score=43.35 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Q 000794 142 AAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLS 190 (1281)
Q Consensus 142 Tavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lfis~Pd~geV 190 (1281)
.++.+|+.+++.+.++......+..||..+..+.|++.+++.+..|-.+
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~ 166 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTI 166 (381)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455455444444444334444455555666666667777777544
No 149
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=34.81 E-value=7.4e+02 Score=29.42 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000794 364 LIFTQVMVAIMLPSSVIPLFRVASSRQ 390 (1281)
Q Consensus 364 LI~aQVI~SL~LPFaLIPLL~LtNsR~ 390 (1281)
-.+.+++..+.+|+++.-+++-...|.
T Consensus 175 ~~~~~l~~~v~lPlvlG~~lr~~~~~~ 201 (328)
T TIGR00832 175 TIAKSVLIYLGIPLIAGILTRYWLLKR 201 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356678888999999988887655443
No 150
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=34.71 E-value=1.3e+03 Score=31.15 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 56 GFDLVALMLVFNFAAIFCQYLSARIA 81 (1281)
Q Consensus 56 GY~LLWVLLLAtImaillQeLSARLG 81 (1281)
.+.++|-++++.++++++=.++.++-
T Consensus 205 l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 205 CVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888777777666654
No 151
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=34.64 E-value=8e+02 Score=29.52 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000794 57 FDLVALMLVFNFAA-IFCQYLSARIAVVTGK-DLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLM 131 (1281)
Q Consensus 57 Y~LLWVLLLAtIma-illQeLSARLGVVTGk-~LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLf 131 (1281)
.+..|...++.++. .+++.+.+=.+..++. ++.+.+. +++. .++..+...++.+.++..++...+..+..++
T Consensus 203 ~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~-~~g~--~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 203 RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILA-GAGL--GIPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-hccH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444333 3445555555555554 4666553 2222 1222233445556666677777777766666
No 152
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=34.63 E-value=6.3e+02 Score=29.23 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=21.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000794 394 VHKISQYHEFLVLITFMGMLGLKLIFMVEMIF 425 (1281)
Q Consensus 394 eyrnS~~~nILawli~llIi~LNIyfVv~~lf 425 (1281)
+|--++...+.+.+..++++++.++.+++.+.
T Consensus 72 pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~ 103 (299)
T PRK09509 72 TFGHGKAESLAALAQSMFISGSALFLFLTGIQ 103 (299)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777766654
No 153
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=33.82 E-value=1e+03 Score=30.13 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 359 GVYQLLIFTQVMVAIMLPSSVIPLFRVA 386 (1281)
Q Consensus 359 g~vqLLI~aQVI~SL~LPFaLIPLL~Lt 386 (1281)
+...++++...+.++..+.....+..+.
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678899999999999888875544443
No 154
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=33.61 E-value=1.1e+03 Score=29.81 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHHHHHHHHHHHhhCCCccccccee---ccccC-CChHHHHHH
Q 000794 138 CVFLAAADAILFPFFAGQLENYK-----AKLLWICTAGIILLSYVLGVLISQPEIPLSVNGM---LTKFS-GDSAFSIMS 208 (1281)
Q Consensus 138 GVLITavdt~lLL~lgsy~g~RK-----lE~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GL---vP~lp-~~sl~~aVA 208 (1281)
.|+-..+.+|+.-++.++ .+| ++.++.=+++ ++++..+.+++..|-..-+..++ +-.+- ....++..+
T Consensus 231 sViP~Il~v~~~s~iek~--l~K~~P~~l~~i~~Pllt-lli~~~l~l~viGPig~~i~~~i~~~i~~L~~~~~~~ig~~ 307 (473)
T PRK11007 231 QVIPALLAGLALGFIETR--LKRIVPDYLYLVVVPVCS-LILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAA 307 (473)
T ss_pred CcHHHHHHHHHHHHHHHH--HHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 344444445555444432 233 2444443333 34445555556667544333332 11222 123344556
Q ss_pred HhcccchhHHHH-HhHhhh
Q 000794 209 LLGASMMPHNFY-LHSSIV 226 (1281)
Q Consensus 209 LIGATImPhNlY-LHSaLV 226 (1281)
++|+.--|-.++ +|-+++
T Consensus 308 i~g~~~~~lV~~G~H~~~~ 326 (473)
T PRK11007 308 LFGFLYAPLVITGVHQTTL 326 (473)
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 666543333333 565543
No 155
>CHL00204 ycf1 Ycf1; Provisional
Probab=33.55 E-value=2e+02 Score=40.97 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH-----h---HHHHHHHHHHHHHH
Q 000794 297 PFAFVLVLFFSN-----Q---IIAVNWNLSGQVVL 323 (1281)
Q Consensus 297 ~~LFAIGLLAAG-----q---SSTITgTlAGQ~Vm 323 (1281)
.++|.+-.+... - .|++||-+.||.+|
T Consensus 33 SylfllRa~vmee~~eGtekkvsAtTGfItGQL~m 67 (1832)
T CHL00204 33 SYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMM 67 (1832)
T ss_pred HHHHHHHHHHhcccccccccceeeeehHHHHHHHH
Confidence 467777666552 1 36677888888766
No 156
>PF03784 Cyclotide: Cyclotide family; InterPro: IPR005535 Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [, , , ]. The three-dimensional structure of cyclotides is compact and contains a number of beta-turns, three beta strands arranged in a distorted triple-stranded beta-sheet, a short helical segment, and a network of disulphide bonds which form a cystine knot. The cystine knot consists of an embedded ring in the structure, formed by two disulphide bonds and their connecting backbone segments is threaded by a third disulphide bond. Although the cystine knot motif is now well known in a wide variety of proteins, the cyclotides remain as the only example in which a cystine knot is embedded within a circular protein backbone, a motif that is referred to as the cyclic cystine knot (CCK) [, , , ]. Cyclotides can be separated into two sub-families, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularisation of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip [, ]. Bracelet and Moebius families of cyclotides possess a Knottin scaffold. The cyclotide family of proteins is abundant in plants from the Rubiaceae and Violaceae families and includes: Kalata B1. Circulins. Cyclopsychotride A. Cycloviolacin O1. ; GO: 0006952 defense response; PDB: 2ERI_A 2KHB_A 1K48_A 1ZNU_A 1N1U_A 2F2J_A 1ORX_A 1NB1_A 1KAL_A 2F2I_A ....
Probab=33.12 E-value=7.9 Score=31.13 Aligned_cols=11 Identities=36% Similarity=1.352 Sum_probs=9.0
Q ss_pred CCcCCCCceecc
Q 000794 1229 VPHCGDGCIWKV 1240 (1281)
Q Consensus 1229 ~p~cg~~cvw~~ 1240 (1281)
+| |||.|||--
T Consensus 2 ip-CGEtCv~~p 12 (30)
T PF03784_consen 2 IP-CGETCVFIP 12 (30)
T ss_dssp EE-EEEETSSSS
T ss_pred CC-cccceeeee
Confidence 56 999999953
No 157
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.67 E-value=1.6e+03 Score=31.49 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhc
Q 000794 343 ISIVPALYCVWTS 355 (1281)
Q Consensus 343 IAIIPALiVai~~ 355 (1281)
..++|.+.+..++
T Consensus 607 ~~~~pl~~~~~~~ 619 (1109)
T PRK10929 607 GLIVPLIMALITF 619 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 3556776654443
No 158
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=32.52 E-value=5.4e+02 Score=29.24 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=26.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHh------------cCchhHHHHHHHHHHHHHHHHHHH
Q 000794 331 IPGWLHHATIRIISIVPALYCVWT------------SGAEGVYQLLIFTQVMVAIMLPSS 378 (1281)
Q Consensus 331 i~~w~RrLitRlIAIIPALiVai~------------~G~~g~vqLLI~aQVI~SL~LPFa 378 (1281)
.+.|.|.+-..+..++..++..++ .|.+..+.++++.|++.++...++
T Consensus 142 ~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v 201 (244)
T PF04142_consen 142 VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFV 201 (244)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHH
Confidence 456777764444444444444322 233445667777888877765443
No 159
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=32.41 E-value=6.8e+02 Score=28.40 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=15.9
Q ss_pred hhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 000794 45 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYL 76 (1281)
Q Consensus 45 IaT~lQAGA~fGY~LLWVLLLAtImaillQeL 76 (1281)
+...+.-|+.+.-...|.+.++.++=-+.+.+
T Consensus 185 ~~eGl~ig~~~~~~~~~~~~~ai~~Hk~~e~~ 216 (317)
T PF02535_consen 185 FFEGLAIGAAFSSDSGWSLFIAIILHKIPEGF 216 (317)
T ss_pred chhhhhhhcchhhhhHHHHHHHHHHhHhHHHh
Confidence 34444455555554556665555444444433
No 160
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=32.26 E-value=2.4e+02 Score=30.42 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred HHHHHHhhCCc--hHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCcccccceeccc
Q 000794 124 AHGLNLLMGVE--LSTCVFLAAADAILFPFF-AGQLENYKAKLLWICTAGIILLSYVLGVL---ISQPEIPLSVNGMLTK 197 (1281)
Q Consensus 124 AIALnLLfGiP--L~~GVLITavdt~lLL~l-gsy~g~RKlE~L~~~LI~lM~L~FVi~lf---is~Pd~geV~~GLvP~ 197 (1281)
++++.++|..| .+..+.+++...+.+-++ .++.+.-+ .....++.+++.++-..+ .-.|...-..-|++|-
T Consensus 17 ~v~Faivfnvp~~~l~~~~~~g~~g~~v~~l~~~~~g~~~---~~atfiaa~~vg~lg~~~sr~~k~p~~v~~vpaIiPl 93 (156)
T COG3610 17 TVGFAIVFNVPPRALPICGFLGALGWVVYYLLGKHFGFSI---VVATFIAAFVVGCLGNLLSRRYKTPAKVFTVPAIIPL 93 (156)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHHHHhcCChhhhecchhhhc
Confidence 44556677653 244444445445544332 33233212 223333444444443333 2335555566788899
Q ss_pred cCCChHHHH
Q 000794 198 FSGDSAFSI 206 (1281)
Q Consensus 198 lp~~sl~~a 206 (1281)
+|+...+.+
T Consensus 94 VPG~~ay~a 102 (156)
T COG3610 94 VPGGLAYQA 102 (156)
T ss_pred CCcHHHHHH
Confidence 999888764
No 161
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=31.74 E-value=1.9e+02 Score=27.74 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhhC
Q 000794 103 FIGVQTELSVIL--LDLTMVLGIAHGLNLLMG 132 (1281)
Q Consensus 103 ~LwI~aeLAIIa--sDIaEVIGtAIALnLLfG 132 (1281)
.+|.+..+++++ ..+++|+|.+.|..-++|
T Consensus 3 YlW~FL~lsIlcVSgYigQVlg~~savSsf~g 34 (80)
T PF10810_consen 3 YLWTFLALSILCVSGYIGQVLGVASAVSSFFG 34 (80)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 477777777665 579999999998876544
No 162
>PF14342 DUF4396: Domain of unknown function (DUF4396)
Probab=31.50 E-value=6.2e+02 Score=26.86 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhcchhHH-------------HHHHHHHHHHHHHHHHHH
Q 000794 111 SVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENY-------------KAKLLWICTAGIILLSYV 177 (1281)
Q Consensus 111 AIIasDIaEVIGtAIALnLLfGiPL~~GVLITavdt~lLL~lgsy~g~R-------------KlE~L~~~LI~lM~L~FV 177 (1281)
+..++.+++++|..+....++|.+.+.-.++..+..+++-++..|...+ -+..=...++...+.-|.
T Consensus 13 C~aGC~lGdi~~~~~~~~~~~g~~~~~~~~l~~~la~~~gi~~~~~~l~~~~~~~~~~al~~A~~ad~lSm~a~eigm~~ 92 (139)
T PF14342_consen 13 CLAGCTLGDIIGMWIVQATLLGWSMWAIMILAYALAFLFGIAFQYFPLMPMRGLSYGRALKTAFKADTLSMTAMEIGMNG 92 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhCCCcccccceeccccCCChHHHH-HHHhcccchhH--HHHH
Q 000794 178 LGVLISQPEIPLSVNGMLTKFSGDSAFSI-MSLLGASMMPH--NFYL 221 (1281)
Q Consensus 178 i~lfis~Pd~geV~~GLvP~lp~~sl~~a-VALIGATImPh--NlYL 221 (1281)
..+++.. .+-.+.-.....+.+ +|++=+-+.|+ |.|+
T Consensus 93 ~m~~~~~-------~~~~~~~~~~FW~~m~iam~~GF~~a~P~N~wl 132 (139)
T PF14342_consen 93 VMALLTF-------GGAMPPDDPLFWFMMQIAMLAGFLTAYPVNWWL 132 (139)
T ss_pred HHHHHHh-------cccCCCcchHHHHHHHHHHHHHHHHhcchHHHH
No 163
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=31.30 E-value=1.1e+03 Score=29.45 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCH-HHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000794 57 FDLVALMLVFNFAA-IFCQYLSARIAVVTGKDL-AQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG 132 (1281)
Q Consensus 57 Y~LLWVLLLAtIma-illQeLSARLGVVTGk~L-AEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfG 132 (1281)
++-.|...+..++. .++..+.+=++..+|+.- +......+|. ...+..+.+.++.+.++..+.=+.++++..+++
T Consensus 226 ~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~-~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~ 302 (442)
T COG1457 226 SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG-FGLPAILILVLGTVTTNANNLYSAGLSFANIIP 302 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh
Confidence 35666666665554 466777888888899887 6665566665 334445556777777777777788888777775
No 164
>PRK11281 hypothetical protein; Provisional
Probab=31.10 E-value=1.5e+03 Score=31.81 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHh
Q 000794 342 IISIVPALYCVWT 354 (1281)
Q Consensus 342 lIAIIPALiVai~ 354 (1281)
...++|.+.+..+
T Consensus 627 ~~~~~pl~~~~~~ 639 (1113)
T PRK11281 627 SLALLPLLFWSVV 639 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 4455677666444
No 165
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=29.38 E-value=1.4e+03 Score=29.93 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=15.5
Q ss_pred HHHHHHHhhcchhHHHHHHHHHH
Q 000794 145 DAILFPFFAGQLENYKAKLLWIC 167 (1281)
Q Consensus 145 dt~lLL~lgsy~g~RKlE~L~~~ 167 (1281)
..++.||..+++|-.|+.++++-
T Consensus 149 ~ILv~LF~iQ~~GT~~vG~~FgP 171 (622)
T PRK10745 149 IVLTLLFMIQKHGTGMVGKLFAP 171 (622)
T ss_pred HHHHHHHHHhccccHHHhhhhhh
Confidence 34455566677888888877653
No 166
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=29.33 E-value=1.1e+03 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000794 285 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 328 (1281)
Q Consensus 285 ~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~ 328 (1281)
.+.++.+| +.+..+..+..+....+..++-.-++.-+.+.+++
T Consensus 69 ~~a~~~lG-~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~ 111 (394)
T PF03222_consen 69 SMAEKYLG-KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLG 111 (394)
T ss_pred HHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34577787 45555555555555444444433333344455543
No 167
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=29.32 E-value=5.1e+02 Score=32.13 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=37.5
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHHH
Q 000794 51 GGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 108 (1281)
Q Consensus 51 AGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~a 108 (1281)
.+-.|...|+-++.++-.+++... .+...||.++...++.-+|..+-.++.+++
T Consensus 95 ~~~vF~lsll~iiPLA~~l~~ate----qls~~tg~tvGgllNAtfGnaiElii~ilA 148 (441)
T KOG1397|consen 95 KGWVFLLSLLGIIPLAERLGFATE----QLSAYTGPTVGGLLNATFGNAIELIIYILA 148 (441)
T ss_pred chHHHHHHHhhhhhHHHHHHHHHH----HHHhhcCCcHHHHHhhhhccHHHHHHHHHH
Confidence 344566666666666666665554 455669999999999999988776655443
No 168
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=29.25 E-value=3.6e+02 Score=28.76 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=25.7
Q ss_pred hhhHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhh
Q 000794 44 KWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE 95 (1281)
Q Consensus 44 nIaT~lQAGA~fGY~LLWVLLLAtImaillQeLSARLGVVTGk~LAEicRe~ 95 (1281)
.+..-...|...|+ +|.+++..+.+++=-.+..|-|..+-+.+.+..++.
T Consensus 15 Ei~~~i~v~~~iG~--~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~G 64 (148)
T PRK11463 15 EIAVFIAVASVIGV--GWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLARG 64 (148)
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45556677777774 333333333333333334445555555566666553
No 169
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=28.90 E-value=9.3e+02 Score=27.61 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhCCchHHHHHHHH-HHHHHHHHhhcchhHHHHHHHHHHH
Q 000794 121 LGIAHGLNLLMGVELSTCVFLAA-ADAILFPFFAGQLENYKAKLLWICT 168 (1281)
Q Consensus 121 IGtAIALnLLfGiPL~~GVLITa-vdt~lLL~lgsy~g~RKlE~L~~~L 168 (1281)
.|.++|+ ++|+|+.++.++.+ +.++++-++.++ ..-+.+.++..+
T Consensus 44 ~G~~la~--~l~~~~~~~a~~~~~l~a~~i~~l~~~-~~~~~d~~iGi~ 89 (261)
T PRK09543 44 LGVAFGL--LLDVNPFYAVIAVTLLLAGGLVWLEKR-PQLAIDTLLGIM 89 (261)
T ss_pred HHHHHHH--HHcchHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHH
Confidence 3555554 67886555544444 444444444332 222345555443
No 170
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=28.57 E-value=7.1e+02 Score=31.80 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 000794 299 AFVLVLFFSNQIIAVNWNL 317 (1281)
Q Consensus 299 LFAIGLLAAGqSSTITgTl 317 (1281)
++++-++.++.++=.+.+|
T Consensus 77 ~~~~l~~~sa~~~Yf~~~y 95 (545)
T PRK11598 77 LACLFILVGAAAQYFMMTY 95 (545)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333333443333333333
No 171
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=27.50 E-value=1.3e+03 Score=28.97 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=30.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 000794 392 MGVHKISQYHEFLVLITFMGMLGLKLIFMVEM---IFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLA 464 (1281)
Q Consensus 392 MGeyrnS~~~nILawli~llIi~LNIyfVv~~---lfg~s~w~~~l~~~~~~~~~~~~~vl~~~~~~yl~f~lyL~ 464 (1281)
+-+++.++. ...|++.+++.++.+.+.... +| ||+.+. +....+.+.+++...|+.|..
T Consensus 332 ~~~~~~~R~--~a~~~~~~~~fl~gi~~~ls~g~~~f---D~~D~~---------~s~~l~plgaL~~~i~~~w~~ 393 (439)
T COG0733 332 IDKFGISRK--KATWLIGILIFLLGIPSILSFGLSIF---DLVDFV---------VSNILMPLGALLIAIFVGWVL 393 (439)
T ss_pred HHHhCcchH--HHHHHHHHHHHHHhHHHHhcCCchHH---HHHHHH---------HHHHHHHHHHHHHHHHHHHhc
Confidence 335666664 355555555555555444433 44 443332 233344445556666666765
No 172
>PRK12488 acetate permease; Provisional
Probab=27.23 E-value=1.4e+03 Score=29.02 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=32.4
Q ss_pred HHHhhhcCCccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000794 266 AANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 330 (1281)
Q Consensus 266 aAavLygtGi~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lr 330 (1281)
.+.-++..|. .|.. +.++.-|+++..+.+-++..+.....=...-..++..+++.+++++
T Consensus 120 ~a~~lr~~g~--~T~~---d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~ 179 (549)
T PRK12488 120 IAERLRNLGK--YTFA---DVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGIS 179 (549)
T ss_pred HHHHHHHCCC--cchH---HHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444554442 3444 4577778766666666655544433333333445556677776643
No 173
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=27.00 E-value=1.8e+02 Score=32.13 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccccceeccccCCChHHHH--HHHhcccc
Q 000794 164 LWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSI--MSLLGASM 214 (1281)
Q Consensus 164 L~~~LI~lM~L~FVi~lfis~Pd~geV~~GLvP~lp~~sl~~a--VALIGATI 214 (1281)
+.++++.+++++|++ .-|+.-+...|=+|-+++..-+++ +.++|+.+
T Consensus 116 ll~~~~flvTLSFL~----TTP~vw~~~~GGFP~Lsg~g~fllKDivlLa~~l 164 (175)
T PF04224_consen 116 LLAFGTFLVTLSFLF----TTPGVWVPSLGGFPYLSGAGRFLLKDIVLLAASL 164 (175)
T ss_pred HHHHHHHHHHHHHHh----cCCCeeeccCCCCceecCCCchHHHHHHHHHHHH
Confidence 334444455555553 567643333344687766444443 66666543
No 174
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=26.85 E-value=1.2e+03 Score=28.37 Aligned_cols=64 Identities=9% Similarity=0.153 Sum_probs=43.3
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CchHHHHHHHHHHHHHHHH
Q 000794 88 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILFPF 151 (1281)
Q Consensus 88 LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfG-iPL~~GVLITavdt~lLL~ 151 (1281)
|++..+..+|+...+++.+.+.+|+..+-++-+...+-=++-++. +|....++++.+..+++..
T Consensus 257 l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 257 LSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 445666677877777777778888888777766666666666643 5666666666666655543
No 175
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.46 E-value=1.5e+03 Score=29.40 Aligned_cols=226 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCccccCHHHHHHHHH--------------------------Hhhcch
Q 000794 244 HFFAILCIFSGIYMVNYVLMNSAANLFYS---TGLVLLTFQDAMSLME--------------------------QVFRSP 294 (1281)
Q Consensus 244 ~~~gil~v~lgsfLINlaIViVaAavLyg---tGi~V~tl~dAa~lLe--------------------------pvLGg~ 294 (1281)
++++++-.+.+.+++...+.++---++|. .-.+.++-+|+.+-.. |+||-.
T Consensus 265 hWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~ 344 (628)
T KOG1278|consen 265 HWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMI 344 (628)
T ss_pred EEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEeecccccCCCCCeEEEEEeccChhhhHHH
Q ss_pred hHHHHHHH----------HHHHHHhHH-HHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHh---------
Q 000794 295 VVPFAFVL----------VLFFSNQII-AVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWT--------- 354 (1281)
Q Consensus 295 ~A~~LFAI----------GLLAAGqSS-TITgTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai~--------- 354 (1281)
...++||. +|+.++..- .+.|..||...+.=+.-.+-+.|++.++. ...+.|.++.+++
T Consensus 345 ~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~l-ta~l~PGivf~~~f~lN~~lW~ 423 (628)
T KOG1278|consen 345 LVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAIL-TAFLFPGIVFAIFFVLNFFLWG 423 (628)
T ss_pred HHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHh-hhhhcchHHHHHHHHHHHHhhc
Q ss_pred ---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---------------CCchHHHHHHHHHHHHHHHHHH
Q 000794 355 ---SGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGV---------------HKISQYHEFLVLITFMGMLGLK 416 (1281)
Q Consensus 355 ---~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGe---------------yrnS~~~nILawli~llIi~LN 416 (1281)
+|.-+...|..+.-.--.+-.|...+--+.-.+.+.+--+ |-|.....+++.+.-.+.+++-
T Consensus 424 ~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIE 503 (628)
T KOG1278|consen 424 KHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIE 503 (628)
T ss_pred CCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHH
Q ss_pred HHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCcccc
Q 000794 417 LIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEF 484 (1281)
Q Consensus 417 IyfVv~~lfg~s~w~~~l~~~~~~~~~~~~~vl~~~~~~yl~f~lyL~~~pl~s~s~~~~~~~~~~~~ 484 (1281)
++|+++.+ |+++. +....++.+.+.-++...-.+.--+.=..-=+|.-.|-|.+
T Consensus 504 LfFI~~Si-----W~~qf---------YY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRs 557 (628)
T KOG1278|consen 504 LFFILSSI-----WLNQF---------YYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRS 557 (628)
T ss_pred HHHHHHHH-----HhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeee
No 176
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=26.45 E-value=1.7e+02 Score=39.64 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 000794 454 FTSLCLMLWLAT 465 (1281)
Q Consensus 454 ~~yl~f~lyL~~ 465 (1281)
++|++|++|-++
T Consensus 1073 vlYvvFLV~aiL 1084 (1096)
T TIGR00927 1073 LLYFVFLIISVM 1084 (1096)
T ss_pred HHHHHHHHHHHH
Confidence 467777766443
No 177
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=26.43 E-value=1.1e+03 Score=27.75 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=39.0
Q ss_pred hhhHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHhhcCchhHHHHHHH
Q 000794 44 KWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 107 (1281)
Q Consensus 44 nIaT~lQAGA~fGY~LLWVLLLAtImaill-QeLSARLGVVTGk~LAEicRe~Ygk~~~~~LwI~ 107 (1281)
.|...+..=..+.-..+|++.+..+++.++ -..+.|+.+...+.-.++.|- .|-.-..+.+.+
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~i~ntir~~v~~r~~ei~im~~-~GAt~~~I~~~f 229 (309)
T PRK11026 166 SWFARLAALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFSRRDTINVMKL-IGATDGFILRPF 229 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence 566655555444444566655555554444 556899999999998888864 564444444433
No 178
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=26.13 E-value=1e+03 Score=27.53 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHH
Q 000794 54 HFGFDLVALMLVFNFA-AIFCQYLSARI 80 (1281)
Q Consensus 54 ~fGY~LLWVLLLAtIm-aillQeLSARL 80 (1281)
+.||..+|.++++.++ +=..|.++..+
T Consensus 39 ~~G~s~~e~~lmS~~iyAGasQfv~i~L 66 (238)
T COG1296 39 ALGFSPLEAILMSLLIYAGASQFVAIGL 66 (238)
T ss_pred HcCCcHHHHHHHHHHHHccHHHHHHHHH
Confidence 7889999998888765 44677777665
No 179
>PRK11281 hypothetical protein; Provisional
Probab=26.07 E-value=2e+03 Score=30.57 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHH
Q 000794 333 GWLHHATIRIISIVPALYCVW-TSGAEGVYQLLIFTQVMVAIMLPSSVI 380 (1281)
Q Consensus 333 ~w~RrLitRlIAIIPALiVai-~~G~~g~vqLLI~aQVI~SL~LPFaLI 380 (1281)
.+.+++++.++.++|.+++++ +.|.- .+.+......+.++.+-+..+
T Consensus 682 ~~~~~~~~~~l~~~P~~l~~l~~~GY~-yTa~~l~~~l~~s~~l~~~~~ 729 (1113)
T PRK11281 682 HTLRLVVRTVLTIAPIALIVLVVLGYY-YTALRLIGRLIETLYLLIIWN 729 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 355666566666677766533 34532 233444444555555544433
No 180
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=25.82 E-value=1.6e+02 Score=30.79 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCccccccee--ccc-----cC
Q 000794 128 NLLMGVELSTCVFLAAADAILFPFFAGQLENYKA-KLLWICTAGIILLSYVLGVLISQPEIPLSVNGM--LTK-----FS 199 (1281)
Q Consensus 128 nLLfGiPL~~GVLITavdt~lLL~lgsy~g~RKl-E~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GL--vP~-----lp 199 (1281)
..++|+|+..-..+.. . .++...+..-.+++ +.+...+++.....++.+++..+|-....+-++ +-. -+
T Consensus 16 ~~~~~~~~p~~~pvf~--~-~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~~~~~f~~~~~~ 92 (140)
T PF11168_consen 16 SKLFGWPLPFFAPVFP--A-ILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLLFFWSFYRMSRG 92 (140)
T ss_pred HHHHCCCchHHHHHHH--H-HHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456776544332222 2 22222222223333 344444444555566677777677554433332 211 13
Q ss_pred CChHHHHHHHhcccchhHH
Q 000794 200 GDSAFSIMSLLGASMMPHN 218 (1281)
Q Consensus 200 ~~sl~~aVALIGATImPhN 218 (1281)
+..++..+++++.+++||.
T Consensus 93 ~~~l~~~~~lv~~~ii~~f 111 (140)
T PF11168_consen 93 PKFLFGTMLLVGLSIIPVF 111 (140)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 4567778999999999985
No 181
>PRK09917 hypothetical protein; Provisional
Probab=25.47 E-value=6.9e+02 Score=26.93 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHHhhCCch--HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCcccccceecccc
Q 000794 124 AHGLNLLMGVEL--STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL---ISQPEIPLSVNGMLTKF 198 (1281)
Q Consensus 124 AIALnLLfGiPL--~~GVLITavdt~lLL~lgsy~g~RKlE~L~~~LI~lM~L~FVi~lf---is~Pd~geV~~GLvP~l 198 (1281)
++|+.++|+.|. .+.+.+++...|.+-++....+. ......+++.++++++.+.+ .-.|.-.-.+-|++|-+
T Consensus 21 ~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~---~~~~asfiaa~~igl~s~~~Ar~~k~P~tvf~ip~iiPLV 97 (157)
T PRK09917 21 AVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGL---NIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMF 97 (157)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeHhhHHhcC
Confidence 566777888763 33444455555554222111111 12233344444444444443 22355445567888888
Q ss_pred CCChHHHH
Q 000794 199 SGDSAFSI 206 (1281)
Q Consensus 199 p~~sl~~a 206 (1281)
|+..+|-.
T Consensus 98 PG~~~Y~~ 105 (157)
T PRK09917 98 PGISAYTA 105 (157)
T ss_pred CCHHHHHH
Confidence 99777653
No 182
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=24.64 E-value=7.4e+02 Score=28.44 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccc-----CCCCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 000794 408 TFMGMLGLKLIFMVEMIFGNSDWVGNLRW-----NSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSR 474 (1281)
Q Consensus 408 i~llIi~LNIyfVv~~lfg~s~w~~~l~~-----~~~~~~~~~~~vl~~~~~~yl~f~lyL~~~pl~s~s~~ 474 (1281)
..+++.+++++|+=..+..|=-.+.+=+. ..-.|+- .|++..+.+..-+.|++|+-++++++..+.
T Consensus 161 l~~~~lg~~~lfinrrLGtNYlylsk~P~~~sildvlgpwp-~Yivs~v~ilca~~f~lyllfr~~kk~~~~ 231 (236)
T COG5522 161 LVAISLGIMCLFINRRLGTNYLYLSKEPESASILDVLGPWP-FYIVSEVLILCAVWFLLYLLFRKLKKTYRP 231 (236)
T ss_pred HHHHHHHHHHHHHHHHhcCceeEeecCCCchhHHHHhcCcc-HHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 34555666666665444332122222111 0112332 355554444455778899999999987644
No 183
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=24.20 E-value=1.4e+03 Score=28.02 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=28.4
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 329 (1281)
Q Consensus 283 Aa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~l 329 (1281)
..+.++..+|++....+.++.++...+........++..+++.++++
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi 155 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL 155 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34457888886665666555555544444444455666777887764
No 184
>TIGR00930 2a30 K-Cl cotransporter.
Probab=24.10 E-value=2e+03 Score=29.89 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhc
Q 000794 281 QDAMSLMEQVFR 292 (1281)
Q Consensus 281 ~dAa~lLepvLG 292 (1281)
..++.+....||
T Consensus 143 GG~Y~yisralG 154 (953)
T TIGR00930 143 GGAYYLISRSLG 154 (953)
T ss_pred cHHHHHHHHHhC
Confidence 344555666776
No 185
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=23.96 E-value=1e+03 Score=28.39 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 000794 156 LENYKAKLLWICTAGI 171 (1281)
Q Consensus 156 ~g~RKlE~L~~~LI~l 171 (1281)
+|++|+|.+.+++-++
T Consensus 84 fGy~R~eiLaa~~nav 99 (296)
T COG1230 84 FGYKRLEILAAFLNAL 99 (296)
T ss_pred ccHhHHHHHHHHHHHH
Confidence 5788999876654443
No 186
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.96 E-value=6.7e+02 Score=31.51 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHhhcCchh
Q 000794 55 FGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD--LAQICGEEYDKWT 100 (1281)
Q Consensus 55 fGY~LLWVLLLAtImaillQeLSARLGVVTGk~--LAEicRe~Ygk~~ 100 (1281)
..=+++|.+.+++++.|++ |+|+..=-. |.| .++|++.-
T Consensus 249 L~Nk~iW~la~a~vfvYiv-----R~gi~dW~p~YL~e--~k~~s~~~ 289 (448)
T COG2271 249 LKNKLIWLLALANVFVYVV-----RYGINDWGPLYLSE--VKGFSLVK 289 (448)
T ss_pred HcChHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHH--hcCCCHHH
Confidence 3447899999999988864 777654222 223 34566544
No 187
>PRK11375 allantoin permease; Provisional
Probab=23.72 E-value=1.2e+03 Score=29.10 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhC--CchHHHHHHHHHHH
Q 000794 106 VQTELSVILLDL-TMVLGIAHGLNLLMG--VELSTCVFLAAADA 146 (1281)
Q Consensus 106 I~aeLAIIasDI-aEVIGtAIALnLLfG--iPL~~GVLITavdt 146 (1281)
+...++.+.+++ ++++..+.++..+++ ++..-+++++++..
T Consensus 315 l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~~~~~i~~iig 358 (484)
T PRK11375 315 LVILMTTISTNATGNIIPAGYQIAALAPTKLTYKNGVLIASIIS 358 (484)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHhCcCccchhhHHHHHHHHH
Confidence 334455555544 466666666665653 24444444443333
No 188
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=22.96 E-value=1.8e+03 Score=29.05 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=19.5
Q ss_pred ccccceeccccCCChHHHHHHHhcccch---hHHH
Q 000794 188 PLSVNGMLTKFSGDSAFSIMSLLGASMM---PHNF 219 (1281)
Q Consensus 188 geV~~GLvP~lp~~sl~~aVALIGATIm---PhNl 219 (1281)
..+..|++-.+.-..-|++|=++|.|+. |-+.
T Consensus 355 ~~f~~~~~~slNYa~gFvlI~llhfTvATKQPAMT 389 (643)
T PF10136_consen 355 SPFWEGFLASLNYALGFVLIHLLHFTVATKQPAMT 389 (643)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhcCChHhh
Confidence 3344455444444455678899998886 5554
No 189
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.92 E-value=2.7e+02 Score=34.92 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 000794 403 FLVLITFMGMLGLKLIFMVEMIFG 426 (1281)
Q Consensus 403 ILawli~llIi~LNIyfVv~~lfg 426 (1281)
.++.++-..-|.+-+||++..+.+
T Consensus 455 ~~gG~LPFgsIfIEmYfIFtSfW~ 478 (593)
T KOG1277|consen 455 LMGGFLPFGSIFIEMYFIFTSFWG 478 (593)
T ss_pred HhhccCccchhhhhHHHHHHHHhh
Confidence 333344444677888888887753
No 190
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=22.88 E-value=1.5e+03 Score=27.93 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=27.6
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 330 (1281)
Q Consensus 283 Aa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~lr 330 (1281)
..+.++..||++....+.++.++...+.-......++..+++.+++++
T Consensus 110 ~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~ 157 (483)
T PRK09442 110 LNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGIS 157 (483)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344578888876666666655444322223333445567777877654
No 191
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=22.48 E-value=2.4e+03 Score=30.59 Aligned_cols=24 Identities=8% Similarity=0.265 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 361 YQLLIFTQVMVAIMLPSSVIPLFR 384 (1281)
Q Consensus 361 vqLLI~aQVI~SL~LPFaLIPLL~ 384 (1281)
..+.+...++.++.+-+.++|.++
T Consensus 1035 FAvTLiIGII~SmftALfVtP~Ll 1058 (1403)
T PRK12911 1035 FALTLIIGIFSSMFTALFMTKFFF 1058 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677888888888888664
No 192
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=22.33 E-value=1.6e+03 Score=28.09 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccccccee
Q 000794 161 AKLLWICTAGIILLSYVLGVLISQPEIPLSVNGM 194 (1281)
Q Consensus 161 lE~L~~~LI~lM~L~FVi~lfis~Pd~geV~~GL 194 (1281)
++.++.-++++ +++..+.+++..|-|..+..++
T Consensus 258 l~~~~vP~lt~-lv~~~l~~~vigPi~~~i~~~i 290 (462)
T TIGR01992 258 IQLLVVPPVSL-LVTGFLAHAIIGPIGRLIGNGI 290 (462)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 4455555555677666544443
No 193
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=22.28 E-value=1.6e+03 Score=28.23 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHhhhcCCccccCHHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000794 266 AANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 329 (1281)
Q Consensus 266 aAavLygtGi~V~tl~dAa~lLepvLGg~~A~~LFAIGLLAAGqSSTITgTlAGQ~VmeGFL~l 329 (1281)
.+-.++..| .. ...+.|+.-|+++....+-++..+.+...-......++..+++.++++
T Consensus 85 ~~p~~rr~~--~~---T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi 143 (552)
T TIGR03648 85 LAPYLRKFG--KY---TVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV 143 (552)
T ss_pred HHHHHHHCC--Cc---cHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344454443 33 445568888876655555554444333333333344566788888765
No 194
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=22.19 E-value=5.7e+02 Score=29.31 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=35.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHH
Q 000794 302 LVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVW 353 (1281)
Q Consensus 302 IGLLAAGqSSTITgTlAGQ~VmeGFL~lri~~w~RrLitRlIAIIPALiVai 353 (1281)
++++.||..+.++..++...+.+.+.+.+.+ ..+|.+.|++.++|...+.-
T Consensus 3 ~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P-~~Qr~iirIl~m~Piyai~S 53 (274)
T PF03619_consen 3 WAWIIAGIFALLTILISLFLIYQHLRNYSKP-EEQRYIIRILLMVPIYAICS 53 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhHHHHHHH
Confidence 3556677777777777777777777776644 44555778888888776543
No 195
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=22.06 E-value=1.6e+03 Score=28.14 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=45.8
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CchHHHHHHHHHHHHHH
Q 000794 88 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILF 149 (1281)
Q Consensus 88 LAEicRe~Ygk~~~~~LwI~aeLAIIasDIaEVIGtAIALnLLfG-iPL~~GVLITavdt~lL 149 (1281)
|.+.-+..+|+...+++.++..+|+..+.++-+..+|-=++-++. +..-.++.++.+..+++
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflv 327 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLV 327 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 556666778888888898999999998888877777776776665 56666666666666554
No 196
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=21.71 E-value=1.3e+03 Score=28.29 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCC
Q 000794 55 FGFDLVALMLVFNFAAIFCQYLSARIAVV----TGKD 87 (1281)
Q Consensus 55 fGY~LLWVLLLAtImaillQeLSARLGVV----TGk~ 87 (1281)
|==+++-.+.+++++++++--+-.|+|-. ||++
T Consensus 118 ~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G 154 (347)
T TIGR00783 118 IFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHG 154 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCc
Confidence 33467888999999999999999999876 5664
No 197
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.69 E-value=9.7e+02 Score=26.75 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHH
Q 000794 372 AIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLK 416 (1281)
Q Consensus 372 SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~nILawli~llIi~LN 416 (1281)
.++|-..++..++|.|+| +.++.+.++|....+++++-
T Consensus 118 ~l~Lal~~~~~iyfl~~K-------~~~~~rA~~~~~~~L~~G~~ 155 (194)
T PF11833_consen 118 GLQLALGLGACIYFLNRK-------ERKLGRAFLWTLGGLVVGLI 155 (194)
T ss_pred chHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHHHH
Confidence 355667777888898976 56677777777777766653
No 198
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=21.65 E-value=1.7e+03 Score=28.21 Aligned_cols=17 Identities=12% Similarity=-0.062 Sum_probs=7.1
Q ss_pred HHhhcchhHHHHHHHHHH
Q 000794 288 EQVFRSPVVPFAFVLVLF 305 (1281)
Q Consensus 288 epvLGg~~A~~LFAIGLL 305 (1281)
...+| ++..++.+..++
T Consensus 100 ~~~~G-~~~gfi~GW~~~ 116 (557)
T TIGR00906 100 YVTVG-ELWAFITGWNLI 116 (557)
T ss_pred HHHhC-cHHHHHHHHHHH
Confidence 34455 444444333333
No 199
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=21.45 E-value=1.4e+03 Score=27.02 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=39.6
Q ss_pred ChhhHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHhhcCchhHHHHH
Q 000794 43 GKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWTCVFIG 105 (1281)
Q Consensus 43 GnIaT~lQAGA~fGY~LLWVLLLAtImaill-QeLSARLGVVTGk~LAEicRe~Ygk~~~~~Lw 105 (1281)
..|...+..=..+.-..+|++.+..++..++ -.-+.|+++...|.=.++.|- .|-.-.++.+
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~i~Ntirl~i~~Rr~EI~im~l-vGAt~~~I~~ 227 (309)
T TIGR00439 165 TEWVQTLYALNELIRKVLWFLSVLMGMAVFLVIGNSIRLQILSRRESIEVTKL-LGATDSFILR 227 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHH
Confidence 3566666655555556667666665555543 555899999999998888764 5644434433
No 200
>PRK11021 putative transporter; Provisional
Probab=20.96 E-value=1.4e+03 Score=27.09 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHhhcCchhHHH
Q 000794 66 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 103 (1281)
Q Consensus 66 AtImaillQeLSARLGVVTGk~LAEicRe~Ygk~~~~~ 103 (1281)
..+.++.+-|++.++-. +| +...-.++.+|+.+.++
T Consensus 45 ~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 45 IFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGRV 80 (410)
T ss_pred HHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHHH
Confidence 34445556666666643 34 56777788889877654
No 201
>PF13722 DUF4161: C-terminal domain on CstA (DUF4161)
Probab=20.57 E-value=9.9e+02 Score=25.03 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000794 302 LVLFFSNQIIAVNWNLSGQVVLQDFLR 328 (1281)
Q Consensus 302 IGLLAAGqSSTITgTlAGQ~VmeGFL~ 328 (1281)
++.-+-..+|.=|++=.+.++++++++
T Consensus 13 l~v~~f~lTtlDTa~Rl~R~~~~E~~~ 39 (127)
T PF13722_consen 13 LFVAAFALTTLDTATRLARYIIQELFG 39 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445555677778899999988
No 202
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=20.51 E-value=1.4e+03 Score=26.58 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000794 364 LIFTQVMVAIMLPSSVIPLFRVAS 387 (1281)
Q Consensus 364 LI~aQVI~SL~LPFaLIPLL~LtN 387 (1281)
..+..+.+++.+...+...+.+..
T Consensus 116 ~~l~~i~q~~F~~~Ll~FwL~~~~ 139 (298)
T PF06664_consen 116 LLLDDIFQSIFYAYLLLFWLVFFD 139 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777766665543
No 203
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=20.51 E-value=9.4e+02 Score=30.57 Aligned_cols=128 Identities=8% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccccCHHHHHHHHHHhhc---chhHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHhhh
Q 000794 254 GIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFR---SPVVPFAFVLVLFFSNQIIAVNWNLS---GQVVLQDFL 327 (1281)
Q Consensus 254 gsfLINlaIViVaAavLygtGi~V~tl~dAa~lLepvLG---g~~A~~LFAIGLLAAGqSSTITgTlA---GQ~VmeGFL 327 (1281)
..|++.+.+++.++..+ +-.++. ....+.++++-++.++.++-.+.+|+ ..-+++..+
T Consensus 45 ~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~k~~~~~l~~~~a~~~yf~~~ygv~id~~mi~nv~ 108 (522)
T PRK09598 45 VSFIAMLVVLLFCVNGL----------------LFLLLGLLSRRLMRLSAIVFSLLNSIAFYFINTYKVFLNKSMMGNVL 108 (522)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeecHHHHHHHH
Q ss_pred CCCcC------CchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHH
Q 000794 328 RLDIP------GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYH 401 (1281)
Q Consensus 328 ~lri~------~w~RrLitRlIAIIPALiVai~~G~~g~vqLLI~aQVI~SL~LPFaLIPLL~LtNsR~IMGeyrnS~~~ 401 (1281)
+-+.. .|.-.+...++.++|++++... .+.-.-+...+..+.+.++++.++.+.+.+...--+||.+.+
T Consensus 109 ~T~~~Ea~~~~~~~~~~~~~~l~~lp~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (522)
T PRK09598 109 NTNTAESSGFLSVKLFIYIVVLGVLPGYIIYKI-----PLKNSSKKAPFAAILALVLIFLASAFANSKNWLWFDKHAKFL 183 (522)
T ss_pred hCCHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-----ccccccHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhHHHH
Q ss_pred H
Q 000794 402 E 402 (1281)
Q Consensus 402 n 402 (1281)
+
T Consensus 184 ~ 184 (522)
T PRK09598 184 G 184 (522)
T ss_pred H
No 204
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=20.41 E-value=1.4e+03 Score=26.77 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=20.1
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhHHHHHH
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNW 315 (1281)
Q Consensus 283 Aa~lLepvLGg~~A~~LFAIGLLAAGqSSTITg 315 (1281)
..+..+..+| +++.++.++.++........+.
T Consensus 61 ~~~~~~~~~G-~~~g~~~~~~~~~~~~~~~~ay 92 (381)
T TIGR00837 61 FNTIAKDLLG-KTGNIIAGLSLLFVLYILTYAY 92 (381)
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677787 6777777776666655554443
No 205
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=20.33 E-value=9.6e+02 Score=29.15 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhh
Q 000794 312 AVNWNLSGQVVLQDF 326 (1281)
Q Consensus 312 TITgTlAGQ~VmeGF 326 (1281)
.+++.+|..++..||
T Consensus 188 ~i~~~iG~yll~kGf 202 (344)
T PF04123_consen 188 IILLLIGLYLLYKGF 202 (344)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444556667788888
No 206
>COG2237 Predicted membrane protein [Function unknown]
Probab=20.23 E-value=9.6e+02 Score=29.42 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhh
Q 000794 313 VNWNLSGQVVLQDF 326 (1281)
Q Consensus 313 ITgTlAGQ~VmeGF 326 (1281)
++...|..++..||
T Consensus 189 i~livGly~l~kGf 202 (364)
T COG2237 189 ILLIVGLYMLYKGF 202 (364)
T ss_pred HHHHHHHHHHHHhc
Confidence 44455666777777
No 207
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.02 E-value=1.5e+03 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000794 58 DLVALMLVFNFAAIFCQYLSARIAV 82 (1281)
Q Consensus 58 ~LLWVLLLAtImaillQeLSARLGV 82 (1281)
+.+|..++..++...+-.-..-+|+
T Consensus 3 ~~iw~~ll~~~l~~Y~vL~GfDfGv 27 (328)
T PF02322_consen 3 QIIWFALLGLLLAGYVVLDGFDFGV 27 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccH
Confidence 4677777766665554444444443
Done!