Query 000794
Match_columns 1281
No_of_seqs 229 out of 1333
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 17:22:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000794.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_563-566//hhsearch_pdb/000794hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 1.0 1 1 85.0 36.5 332 32-385 33-381 (501)
2 3dh4_A Sodium/glucose cotransp 1.0 1 1 73.5 32.9 284 35-328 31-354 (530)
3 2xq2_A Sodium/glucose cotransp 1.0 1 1 66.2 39.2 117 36-155 61-182 (593)
4 3l1l_A Arginine/agmatine antip 1.0 1 1 54.8 40.1 41 283-324 262-302 (445)
5 3gia_A Uncharacterized protein 1.0 1 1 52.7 38.9 40 283-323 260-299 (444)
6 4djk_A Probable glutamate/gamm 1.0 1 1 49.1 38.2 33 289-321 280-314 (511)
7 2a65_A Leutaa, Na(+):neurotran 1.0 1 1 32.5 32.8 123 293-423 337-471 (519)
8 4ain_A Glycine betaine transpo 1.0 1 1 32.5 15.1 50 36-87 35-90 (539)
9 2wsw_A BCCT family betaine/car 1.0 1 1 20.0 31.3 11 124-134 221-231 (509)
10 2lam_A Cyclotide CTER M; insec 1.0 1 1 19.6 0.9 12 1229-1240 2-13 (29)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=1.00 E-value=1 Score=85.03 Aligned_cols=332 Identities=9% Similarity=-0.022 Sum_probs=156.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8866562226870667777678-445579999999999999999999888875198899999713285158899999999
Q 000794 32 VLLISIGYVDPGKWAVIIEGGA-HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 110 (1281)
Q Consensus 32 GlLvSiAyIDPGnIaTslqAGA-~FGY~LLWVLLLAtIi~illQ~LSARLGVVTGk~LAEiiRe~Ygk~~~i~LwIlaeL 110 (1281)
..+...+.+..+++.......+ .--.+-++.+++++++..++-.+.++.|..+|.......|..||++.+.+..++..+
T Consensus 33 ~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i 112 (501)
T 2jln_A 33 AAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKAL 112 (501)
T ss_dssp HHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999889999999988358689999999999999999999998688745199745534841351589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HCCC-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999998985----1891-479999999999999984031247999999999999999999988976378
Q 000794 111 SVILLDLTMVLGIAHGLNLL----MGVE-LSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQP 185 (1281)
Q Consensus 111 AIIasDIaEVIGtAIALnLL----fGIP-L~iGVLITaldtllLL~l~sy~g~RKlE~Li~~LI~iMlLsFvi~liis~P 185 (1281)
..++-..-+....+.+++.+ +|++ .++++++.++..+++.+++ +...++++++...++.++.+.+.+.++ .+.
T Consensus 113 ~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~i~~i~~~~~~l-~~~ 190 (501)
T 2jln_A 113 LSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG-ITFIRWMNVFASPVLLAMGVYMVYLML-DGA 190 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC
T ss_conf 999999999999999999999986186158999999999999999918-999999999999999999999999999-846
Q ss_pred CC--CCCCCEECCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCCCCC-CCHHHHH----HHHHHHHHHHHHHH
Q ss_conf 81--1200311036687819999998-636520389998676443035665520-0000347----99999999999999
Q 000794 186 EI--PLSVNGMLTKFSGDSAFSIMSL-LGASMMPHNFYLHSSIVRRHQGQVNIS-KGALCHD----HFFAILCIFSGIYM 257 (1281)
Q Consensus 186 d~--geVl~GLvP~lp~~sl~~aVAL-IGATImPhNlYLHSaLVksR~~~~~~s-~~alr~D----~~~sil~v~iGsfL 257 (1281)
++ ..+.. ..|....-+...++.+ +|..+ ++..+. +-. .|..+++.. .++..+- .+.+ .++|.++
T Consensus 191 g~~~~~~~~-~~~~~~~~~f~~ai~~~~~~~~-~~~~~~-~Dy--sRy~~~~~~~~~~~~~~~~~~~~~g---~~lG~~i 262 (501)
T 2jln_A 191 DVSLGEVMS-MGGENPGMPFSTAIMIFVGGWI-AVVVSI-HDI--VKECKVDPNASREGQTKADARYATA---QWLGMVP 262 (501)
T ss_dssp TCCHHHHTT-CCCSSCCSCHHHHHHHHHTTTH-HHHTTT-HHH--HTTBCCCTTCCHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHH-HHHHCC-CCC--CCCCCCCCCCCCCCHHHCCCHHHHH---HHHHHHH
T ss_conf 876202430-6886424799999999999999-998526-763--3417897542111022112038999---9899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHH-HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999874301896546789999999996132059-99999-9999987687898-89779999975417986773
Q 000794 258 VNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVV-PFAFV-LVLFFSNQIIAVN-WNLSGQVVLQDFLRLDIPGW 334 (1281)
Q Consensus 258 INlaIIivaAavLygtGi~V~t~~dAa~lLepvlGg~~A-~iIFA-IGLLAAGqSSTIT-gTlAGq~VmeGFL~lr~~~w 334 (1281)
.+..++.+++..-... ...++. .++...+.++.. ..+.. +.++.+..++.+. ..|+....++.++...++.
T Consensus 263 ~~~~~~~lG~~~~~~~--~~~dp~---~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~- 336 (501)
T 2jln_A 263 ASIIFGFIGAASMVLV--GEWNPV---IAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTF- 336 (501)
T ss_dssp HHHHHHHHHHHHHHHH--SCSCHH---HHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCH-
T ss_pred HHHHHHHHHHHHHHHC--CCCCHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-
T ss_conf 9999999999998740--226899---9999971340599999999999999999997711888999999948666662-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 277899999999889998751852379999999999999888899999999
Q 000794 335 LHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 385 (1281)
Q Consensus 335 ~RrLitRlIAIIPALiVal~~G~~glv~LLI~aQVL~aL~LPFalIPLL~L 385 (1281)
++. +.+++++. ++++. .+ ....+..|...+..+.-|...|-+.-+
T Consensus 337 -~~~-~~i~~vi~-~~i~~-~~--~~~~f~~FL~~lg~~l~P~~gI~l~Dy 381 (501)
T 2jln_A 337 -KTG-VIVSAVVG-LLMMP-WQ--FAGVLNTFLNLLASALGPLAGIMISDY 381 (501)
T ss_dssp -HHH-HHHHHHHH-HHTCG-GG--THHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -HHH-HHHHHHHH-HHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -589-99999999-99999-98--687999999999999999999999999
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=73.52 Aligned_cols=284 Identities=13% Similarity=0.103 Sum_probs=129.5
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 656222687066777767844557999999999----9999999999888875198899999713285158899999999
Q 000794 35 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 110 (1281)
Q Consensus 35 vSiAyIDPGnIaTslqAGA~FGY~LLWVLLLAt----Ii~illQ~LSARLGVVTGk~LAEiiRe~Ygk~~~i~LwIlaeL 110 (1281)
+.+.++....+......+..+|+.-+|..+.+. ++++++-...-|. .-.++.|..++||++..+.+.-+...+
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~---~~~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHT---TCCSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999879999877999998275999999999999999999999999986---991499999998496889999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCC-
Q ss_conf 9999-99999999999989851891479999999999999984031247999999999--9999999999889763788-
Q 000794 111 SVIL-LDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWIC--TAGIILLSYVLGVLISQPE- 186 (1281)
Q Consensus 111 AIIa-sDIaEVIGtAIALnLLfGIPL~iGVLITaldtllLL~l~sy~g~RKlE~Li~~--LI~iMlLsFvi~liis~Pd- 186 (1281)
..+. .-...+.+.+..++.++|+|.++++++.++.+.+..+++..+..-..+.+..+ +++++++.++....+..++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~ 187 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG 187 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999999999999969988999999999999999713439999999999999999999999999998287056
Q ss_pred C-----------CCCCCEECCCC-CC-CHHHHHHHHHCCCCHHHHHHHHH--HHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1-----------12003110366-87-81999999863652038999867--6443035665520000034799999999
Q 000794 187 I-----------PLSVNGMLTKF-SG-DSAFSIMSLLGASMMPHNFYLHS--SIVRRHQGQVNISKGALCHDHFFAILCI 251 (1281)
Q Consensus 187 ~-----------geVl~GLvP~l-p~-~sl~~aVALIGATImPhNlYLHS--aLVksR~~~~~~s~~alr~D~~~sil~v 251 (1281)
. ++..+-+.+.- +. ........++|........|+.. ..+|.=-.-++ .+..++-.+++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laaks--~k~ar~~~~~~~~~- 264 (530)
T 3dh4_A 188 WFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS--VSEAQKGIVFAAFL- 264 (530)
T ss_dssp HHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSSC--HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC--HHHHHHHHHHHHHH-
T ss_conf 899999998507200361368898511036208899999999999897379999989997389--99999999999999-
Q ss_pred HHHHHHHH--HHHHHHHHHHHHCCC--------------CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999--999999987430189--------------65467899999999961320599999999999876878988
Q 000794 252 FSGIYMVN--YVLMNSAANLFYSTG--------------LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNW 315 (1281)
Q Consensus 252 ~iGsfLIN--laIIivaAavLygtG--------------i~V~t~~dAa~lLepvlGg~~A~iIFAIGLLAAGqSSTITg 315 (1281)
.+++. .+++..++..+++.+ ..+.+...+.-.+.+.+. ++..-++..++++|..|+.-..
T Consensus 265 ---~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~~lp-~~l~Gl~~a~llAA~mST~ss~ 340 (530)
T 3dh4_A 265 ---KLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLP-VGVKGVVFAALAAAIVSSLASM 340 (530)
T ss_dssp ---HHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHTTCC-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---999999999999999999816420000001001247788880159999999833-6699999999999999999999
Q ss_pred HHH-HHHHHHHHHC
Q ss_conf 977-9999975417
Q 000794 316 NLS-GQVVLQDFLR 328 (1281)
Q Consensus 316 TlA-Gq~VmeGFL~ 328 (1281)
..+ +..+.+++.+
T Consensus 341 l~s~st~~~~Diy~ 354 (530)
T 3dh4_A 341 LNSTATIFTMDIYK 354 (530)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99868999968889
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=1.00 E-value=1 Score=66.22 Aligned_cols=117 Identities=9% Similarity=0.122 Sum_probs=72.4
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 56222687066777767844557999999999----99999999998888751988999997132851588999999999
Q 000794 36 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 111 (1281)
Q Consensus 36 SiAyIDPGnIaTslqAGA~FGY~LLWVLLLAt----Ii~illQ~LSARLGVVTGk~LAEiiRe~Ygk~~~i~LwIlaeLA 111 (1281)
.+.++....+......+..+|+.-+|..+... +++++ +..|+--..-.++.|..++||++..+.+.-+...+.
T Consensus 61 ~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~---~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~ 137 (593)
T 2xq2_A 61 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKY---FLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISL 137 (593)
T ss_dssp HGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHT---HHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99872589996376999971879999999999999999999---999998579997279999882675079999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -99999999999999989851891479999999999999984031
Q 000794 112 -VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 155 (1281)
Q Consensus 112 -IIasDIaEVIGtAIALnLLfGIPL~iGVLITaldtllLL~l~sy 155 (1281)
++..-...+.+.+..++.++|+|.+.++++.++.+.+..+++..
T Consensus 138 ~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl 182 (593)
T 2xq2_A 138 YIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGL 182 (593)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999999999999999940855999999999999999872143
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=54.80 Aligned_cols=41 Identities=5% Similarity=-0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999961320599999999999876878988977999997
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 324 (1281)
Q Consensus 283 Aa~lLepvlGg~~A~iIFAIGLLAAGqSSTITgTlAGq~Vme 324 (1281)
..++++..+| ++...++.++++.+.+++..+..+++..++.
T Consensus 262 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 262 FGDAARMALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHC-TTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999864-7799999999999999999999999799999
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=52.66 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996132059999999999987687898897799999
Q 000794 283 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 323 (1281)
Q Consensus 283 Aa~lLepvlGg~~A~iIFAIGLLAAGqSSTITgTlAGq~Vm 323 (1281)
...+..+.+| ++...++.++++.+.+++..+..+++..++
T Consensus 260 ~~~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 260 LAVAAKPFLG-NLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999832-789999999999999999999999988999
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=49.06 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=21.1
Q ss_pred HHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9613--20599999999999876878988977999
Q 000794 289 QVFR--SPVVPFAFVLVLFFSNQIIAVNWNLSGQV 321 (1281)
Q Consensus 289 pvlG--g~~A~iIFAIGLLAAGqSSTITgTlAGq~ 321 (1281)
..+| .++...++.++++.+.+++..+..++...
T Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 314 (511)
T 4djk_A 280 SHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSR 314 (511)
T ss_dssp SSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98285515999999999999999999999998899
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=1.00 E-value=1 Score=32.51 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 205999999999998768789889779-9999754179867732778999999998899987518523799999999999
Q 000794 293 SPVVPFAFVLVLFFSNQIIAVNWNLSG-QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 371 (1281)
Q Consensus 293 g~~A~iIFAIGLLAAGqSSTITgTlAG-q~VmeGFL~lr~~~w~RrLitRlIAIIPALiVal~~G~~glv~LLI~aQVL~ 371 (1281)
++.-..+|-+.++.||.+|.+...-.- ..+++.| + +++++-.++.-++..+..+.++ ....+ .++.+. ...
T Consensus 337 g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~--~~R~~~~~~v~~~~fllgl~~~--~~~~g-~~~~D~--~~~ 408 (519)
T 2a65_A 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-K--LSRKHAVLWTAAIVFFSAHLVM--FLNKS-LDEMDF--WAG 408 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C--CCHHHHHHHHHHHHHHHHHHHH--HBTTH-HHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHH--CCCCC-CCHHHH--HHH
T ss_conf 41369999999999999998778657689999751-8--7489999999999999999997--37998-425799--986
Q ss_pred HHHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888899999999----------73222225777537899-999999999999999999999
Q 000794 372 AIMLPSSVIPLFRV----------ASSRQIMGVHKISQYHE-FLVLITFMGMLGLKLIFMVEM 423 (1281)
Q Consensus 372 aL~LPFalIPLL~L----------tSsR~IMGeyrNS~~~n-ILawii~ilIi~LNI~fVv~~ 423 (1281)
.+.+|+..+....+ ..+-+-|..++.+.+++ .+.+++-++++.+-+..++..
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~ 471 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY 471 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHHC
T ss_conf 799999999999721003433579999870567766899987277457999999999999947
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=1.00 E-value=1 Score=32.48 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=23.9
Q ss_pred HHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 56222687066777767-----84455799999999999999999998888751-988
Q 000794 36 SIGYVDPGKWAVIIEGG-----AHFGFDLVALMLVFNFAAIFCQYLSARIAVVT-GKD 87 (1281)
Q Consensus 36 SiAyIDPGnIaTslqAG-----A~FGY~LLWVLLLAtIi~illQ~LSARLGVVT-Gk~ 87 (1281)
..+.++|........+. .+||+-.+|...+..+..+ -..-.|+|-+. |++
T Consensus 35 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~f~l--~lafS~~G~IrLG~~ 90 (539)
T 4ain_A 35 VWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIV--VIAASKFGTIRLGRI 90 (539)
T ss_dssp HHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSGGGSCBSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHEECCCCCEECCCC
T ss_conf 99998789999999999999998876999999999999888--760457775500899
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=1.00 E-value=1 Score=20.05 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=4.7
Q ss_pred HHHHHHHHCCC
Q ss_conf 99989851891
Q 000794 124 AHGLNLLMGVE 134 (1281)
Q Consensus 124 AIALnLLfGIP 134 (1281)
+.|++.+||+|
T Consensus 221 ~~Gl~~lfGi~ 231 (509)
T 2wsw_A 221 TECIQYLFGIP 231 (509)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHCCCC
T ss_conf 99999974999
No 10
>2lam_A Cyclotide CTER M; insecticidal peptide, antiviral protein; NMR {Clitoria ternatea}
Probab=1.00 E-value=1 Score=19.56 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=10.1
Q ss_pred CCCCCCCCEECC
Q ss_conf 776799840025
Q 000794 1229 VPHCGDGCIWKV 1240 (1281)
Q Consensus 1229 ~p~cg~~cvw~~ 1240 (1281)
+|.|||.|||-.
T Consensus 2 ~p~CGEsCv~~~ 13 (29)
T 2lam_A 2 LPTCGETCTLGT 13 (29)
T ss_dssp BCTTCCCCSSSC
T ss_pred CCCCCCCEEEEE
T ss_conf 887626556457
Done!