Query 000794
Match_columns 1281
No_of_seqs 229 out of 1333
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 17:28:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000794.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_563-566//hhsearch_scop/000794hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 75.7 1.6 0.00012 18.1 39.2 122 294-423 334-467 (509)
2 d1kala_ g.3.3.1 (A:) Kalata B1 5.5 62 0.0045 5.7 0.3 11 1228-1238 9-19 (29)
3 d2a6aa1 c.55.1.9 (A:1-103) Hyp 3.2 92 0.0067 4.4 -0.7 12 654-665 60-71 (103)
4 d1dfna_ g.9.1.1 (A:) Defensin 3.0 1.3E+02 0.0095 3.2 0.5 12 831-842 5-16 (30)
5 d2bh1a1 c.55.1.11 (A:146-239) 2.8 1.4E+02 0.011 2.9 0.4 21 1158-1178 10-34 (94)
6 d1bu2a2 a.74.1.1 (A:149-250) V 2.0 1.8E+02 0.013 2.0 -0.3 15 207-221 59-73 (102)
7 d1okja1 c.55.1.9 (A:1-106) Hyp 1.9 1.3E+02 0.0095 3.2 -1.2 9 657-665 63-71 (106)
8 d1ri9a_ b.34.2.1 (A:) Fyn-bind 1.9 1.5E+02 0.011 2.7 -0.9 8 1268-1275 65-72 (77)
9 d1iyca_ g.31.1.2 (A:) Antifung 1.9 2.3E+02 0.017 1.2 2.1 23 1213-1238 2-24 (36)
10 d1sa3a_ c.52.1.23 (A:) Restric 1.8 2.4E+02 0.018 1.1 0.3 36 1214-1249 175-210 (262)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=75.71 E-value=1.6 Score=18.11 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 059999999999987687898897799-9997541798677327789999999988999875185237999999999999
Q 000794 294 PVVPFAFVLVLFFSNQIIAVNWNLSGQ-VVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVA 372 (1281)
Q Consensus 294 ~~A~iIFAIGLLAAGqSSTITgTlAGq-~VmeGFL~lr~~~w~RrLitRlIAIIPALiVal~~G~~glv~LLI~aQVL~a 372 (1281)
..-..+|-+.++.+|.+|.+...-.-- .+.+.| + .++++...++.++.. -...+..+ ...+ ..++++ ....
T Consensus 334 ~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~-~--~~r~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~D~--~~~~ 405 (509)
T d2a65a1 334 TFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-K--LSRKHAVLWTAAIVF-FSAHLVMF-LNKS-LDEMDF--WAGT 405 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C--CCHHHHHHHHHHHHH-HHHHHHHH-BTTH-HHHHHH--HTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-C--CCHHHHHHHEEEEEE-HHHHHHHH-HCCH-HHHHHH--HHHH
T ss_conf 1379999999999999877336330448989864-9--863603523067887-25247887-3531-888999--9999
Q ss_pred HHHHHHHHH----HH------HHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988889999----99------99732222257775-37899999999999999999999999
Q 000794 373 IMLPSSVIP----LF------RVASSRQIMGVHKI-SQYHEFLVLITFMGMLGLKLIFMVEM 423 (1281)
Q Consensus 373 L~LPFalIP----LL------~LtSsR~IMGeyrN-S~~~nILawii~ilIi~LNI~fVv~~ 423 (1281)
+.+|+..+. +. ++..+-+-|..++. ..|...+-+++-++++++-++.+++.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~ 467 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY 467 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCCCHHHHHHHHEEEEEHHHHHHEEEHHHHHC
T ss_conf 99999999998602237538999999984789877899987403423853635254238642
No 2
>d1kala_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=5.52 E-value=62 Score=5.74 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=8.4
Q ss_pred CCCCCCCCCEE
Q ss_conf 47767998400
Q 000794 1228 SVPHCGDGCIW 1238 (1281)
Q Consensus 1228 ~~p~cg~~cvw 1238 (1281)
.+|-|||-||=
T Consensus 9 glpicgetcvg 19 (29)
T d1kala_ 9 GLPVCGETCVG 19 (29)
T ss_dssp TEECSSCCCTT
T ss_pred CCCCCCCCCCC
T ss_conf 85342553036
No 3
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=3.15 E-value=92 Score=4.41 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=6.8
Q ss_pred CCCCCCCEEECC
Q ss_conf 778998502045
Q 000794 654 MSDGPASLRSLS 665 (1281)
Q Consensus 654 ~sdgP~S~~s~~ 665 (1281)
..-|||||+.+|
T Consensus 60 v~~GPGsfTglR 71 (103)
T d2a6aa1 60 VGIGPGGLTGLR 71 (103)
T ss_dssp EECCSSCHHHHH
T ss_pred HCCCCCCCHHHH
T ss_conf 247887632089
No 4
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.04 E-value=1.3e+02 Score=3.23 Aligned_cols=12 Identities=67% Similarity=1.085 Sum_probs=4.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 788887643223
Q 000794 831 RIPSEDSGERRY 842 (1281)
Q Consensus 831 ~~~~~~~~~~~~ 842 (1281)
|||.--.|||||
T Consensus 5 ripac~agerry 16 (30)
T d1dfna_ 5 RIPACIAGERRY 16 (30)
T ss_dssp ESSCCCTTCCEE
T ss_pred ECCHHHCCCCCE
T ss_conf 454331276420
No 5
>d2bh1a1 c.55.1.11 (A:146-239) Cytoplasmic domain of general secretion pathway protein L, EpsL {Vibrio cholerae [TaxId: 666]}
Probab=2.78 E-value=1.4e+02 Score=2.86 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=14.5
Q ss_pred CCCCEECCCCC----CCHHHHHHHH
Q ss_conf 88520304899----8845787999
Q 000794 1158 GSEWLFRHNDG----ADEDLIDRVA 1178 (1281)
Q Consensus 1158 gs~wlf~~n~g----~de~lid~va 1178 (1281)
|.+|||||+.+ +|++..+.+.
T Consensus 10 ~~qwLiR~~~~~G~s~e~~wl~~~L 34 (94)
T d2bh1a1 10 GDEWLVRKSTTQGMAVDAQWLSLLA 34 (94)
T ss_dssp TTEEEEEEETTEEEEEEGGGHHHHH
T ss_pred CCEEEEECCCCCEEEECHHHHHHHH
T ss_conf 8999996299818996799999999
No 6
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=2.02 E-value=1.8e+02 Score=2.05 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=5.7
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 998636520389998
Q 000794 207 MSLLGASMMPHNFYL 221 (1281)
Q Consensus 207 VALIGATImPhNlYL 221 (1281)
+-.=.+..-||.-|+
T Consensus 59 iet~ntn~~~wt~yl 73 (102)
T d1bu2a2 59 IETDNTNCRPWTCYL 73 (102)
T ss_dssp HHHTCSSCSTHHHHG
T ss_pred EEECCCCCCCHHHHH
T ss_conf 860787764257778
No 7
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=1.94 E-value=1.3e+02 Score=3.20 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCEEECC
Q ss_conf 998502045
Q 000794 657 GPASLRSLS 665 (1281)
Q Consensus 657 gP~S~~s~~ 665 (1281)
||+||+.+|
T Consensus 63 GPGsfTglR 71 (106)
T d1okja1 63 GPGSFTGVR 71 (106)
T ss_dssp ESSCHHHHH
T ss_pred CCCCCCCCH
T ss_conf 367654205
No 8
>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.89 E-value=1.5e+02 Score=2.68 Aligned_cols=8 Identities=75% Similarity=1.331 Sum_probs=0.0
Q ss_pred CHHHHHHH
Q ss_conf 00455433
Q 000794 1268 GKYTYVLN 1275 (1281)
Q Consensus 1268 gkytyvln 1275 (1281)
|||.||+.
T Consensus 65 GkYGYV~~ 72 (77)
T d1ri9a_ 65 GKYGYVLR 72 (77)
T ss_dssp TEEEEEEG
T ss_pred CCEEEEEE
T ss_conf 96788985
No 9
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=1.85 E-value=2.3e+02 Score=1.21 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66776211112212247767998400
Q 000794 1213 TLKNDEASFTNFMVSSVPHCGDGCIW 1238 (1281)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~p~cg~~cvw 1238 (1281)
++|-++.+. +++|--||-.|-||
T Consensus 2 lpklpddkv---lirsrsncpkgkvw 24 (36)
T d1iyca_ 2 LPKLPDDKV---LIRSRSNCPKGKVW 24 (36)
T ss_dssp CSCCCSSSC---CCTTTSCCCSSCEE
T ss_pred CCCCCCCEE---EEEECCCCCCCCEE
T ss_conf 877887707---88621689876412
No 10
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}
Probab=1.81 E-value=2.4e+02 Score=1.12 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEHH
Q ss_conf 677621111221224776799840025437775034
Q 000794 1214 LKNDEASFTNFMVSSVPHCGDGCIWKVDLILSFGVW 1249 (1281)
Q Consensus 1214 ~~~~~~~~~~~~~~~~p~cg~~cvw~~~li~sfgvw 1249 (1281)
+.|.+++.+.+++..-|--+++-|--+|+||-|-||
T Consensus 175 L~~y~erli~W~vt~~~~~~~~~I~~~dyiI~Fqv~ 210 (262)
T d1sa3a_ 175 LEPYRERFIRWCVTLRAEKSEGNILHPDLLIRFQVI 210 (262)
T ss_dssp HGGGHHHHHHHHHHSCSSCCCSCTTSCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHH
T ss_conf 788899999999853777777751234157865000
Done!