Query 000795
Match_columns 1281
No_of_seqs 423 out of 1094
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 23:40:28 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 5E-251 1E-255 2421.9 122.8 1267 10-1281 499-1778(1780)
2 KOG0929 Guanine nucleotide exc 100.0 3E-201 6E-206 1873.3 77.4 1092 13-1275 420-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 9.4E-98 2E-102 916.6 70.6 882 10-1022 442-1364(1386)
4 COG5307 SEC7 domain proteins [ 100.0 3.5E-78 7.6E-83 757.6 28.8 755 118-1011 263-1022(1024)
5 KOG0930 Guanine nucleotide exc 100.0 2.6E-54 5.6E-59 453.8 14.4 193 120-312 59-251 (395)
6 cd00171 Sec7 Sec7 domain; Doma 100.0 5E-52 1.1E-56 441.2 20.4 183 122-304 1-185 (185)
7 PF01369 Sec7: Sec7 domain; I 100.0 1.7E-51 3.8E-56 440.3 19.7 185 120-304 2-190 (190)
8 smart00222 Sec7 Sec7 domain. D 100.0 3.2E-51 6.8E-56 436.6 20.6 183 122-304 2-187 (187)
9 KOG0931 Predicted guanine nucl 100.0 6.4E-51 1.4E-55 451.7 12.8 196 122-317 197-398 (627)
10 KOG1848 Uncharacterized conser 100.0 2E-43 4.3E-48 433.5 39.7 630 371-1127 518-1233(1610)
11 KOG1846 Uncharacterized conser 100.0 3.5E-40 7.7E-45 384.8 50.5 957 171-1189 348-1595(1777)
12 KOG0932 Guanine nucleotide exc 100.0 1.9E-29 4E-34 287.1 13.3 152 155-306 308-459 (774)
13 PF09324 DUF1981: Domain of un 99.9 5.7E-23 1.2E-27 191.1 5.5 86 671-756 1-86 (86)
14 PLN03076 ARF guanine nucleotid 97.5 0.016 3.4E-07 80.2 26.8 34 699-732 1358-1392(1780)
15 KOG2023 Nuclear transport rece 94.3 2.9 6.2E-05 52.0 19.5 98 698-800 184-281 (885)
16 KOG2171 Karyopherin (importin) 92.5 17 0.00036 48.4 23.6 139 846-1011 115-256 (1075)
17 PF01602 Adaptin_N: Adaptin N 91.5 46 0.00099 41.6 34.8 163 576-756 8-179 (526)
18 PF01602 Adaptin_N: Adaptin N 86.6 96 0.0021 38.7 29.6 293 590-991 188-485 (526)
19 KOG0929 Guanine nucleotide exc 84.8 2.7 5.9E-05 57.2 8.8 38 844-881 1066-1103(1514)
20 PF14500 MMS19_N: Dos2-interac 83.0 41 0.0009 38.5 16.4 156 701-897 95-256 (262)
21 KOG1824 TATA-binding protein-i 76.6 2.7E+02 0.0058 37.1 25.2 270 699-1008 16-304 (1233)
22 KOG1241 Karyopherin (importin) 76.4 1E+02 0.0022 39.8 17.6 257 651-984 10-283 (859)
23 PF12783 Sec7_N: Guanine nucle 75.2 30 0.00064 36.6 11.5 120 592-717 8-146 (168)
24 PF11864 DUF3384: Domain of un 74.1 41 0.00089 41.8 14.0 142 584-738 207-353 (464)
25 PF12717 Cnd1: non-SMC mitotic 71.4 39 0.00085 36.1 11.3 112 655-781 1-112 (178)
26 PF11640 TAN: Telomere-length 70.6 17 0.00037 38.0 8.2 136 856-1001 11-154 (155)
27 KOG1848 Uncharacterized conser 69.4 4.6E+02 0.0099 36.5 33.4 251 613-892 858-1148(1610)
28 PF12348 CLASP_N: CLASP N term 69.1 1.8E+02 0.004 31.9 17.3 177 614-804 24-206 (228)
29 PF08767 CRM1_C: CRM1 C termin 66.2 1.5E+02 0.0032 35.0 15.6 123 849-993 71-198 (319)
30 PTZ00429 beta-adaptin; Provisi 63.8 2.1E+02 0.0046 37.8 17.6 50 846-895 137-186 (746)
31 PF10508 Proteasom_PSMB: Prote 62.9 2.9E+02 0.0063 34.8 18.3 69 645-718 122-190 (503)
32 PF02985 HEAT: HEAT repeat; I 62.5 13 0.00028 27.7 3.9 28 851-878 2-29 (31)
33 cd00020 ARM Armadillo/beta-cat 62.4 29 0.00063 33.3 7.6 107 646-756 11-118 (120)
34 KOG2956 CLIP-associating prote 58.1 4.4E+02 0.0096 32.5 17.4 159 684-886 327-486 (516)
35 KOG1248 Uncharacterized conser 57.9 6.6E+02 0.014 34.5 35.9 416 698-1272 105-542 (1176)
36 KOG2171 Karyopherin (importin) 56.9 6.7E+02 0.015 34.2 40.7 351 651-1116 46-421 (1075)
37 PF12348 CLASP_N: CLASP N term 55.4 2.2E+02 0.0047 31.3 14.0 109 640-757 92-205 (228)
38 PF08767 CRM1_C: CRM1 C termin 53.7 2.1E+02 0.0046 33.7 14.0 128 708-861 92-226 (319)
39 PF12719 Cnd3: Nuclear condens 53.3 61 0.0013 37.7 9.4 29 861-889 76-105 (298)
40 PF12719 Cnd3: Nuclear condens 51.5 1.4E+02 0.0031 34.6 12.1 105 641-754 26-139 (298)
41 PF10508 Proteasom_PSMB: Prote 49.2 6.4E+02 0.014 31.7 23.0 263 655-988 51-318 (503)
42 PF03378 CAS_CSE1: CAS/CSE pro 48.2 6.2E+02 0.013 31.3 25.8 97 640-738 69-168 (435)
43 cd03568 VHS_STAM VHS domain fa 47.3 81 0.0018 32.7 8.1 58 652-714 47-107 (144)
44 KOG2956 CLIP-associating prote 44.5 1.8E+02 0.004 35.6 11.3 113 851-990 289-401 (516)
45 cd00020 ARM Armadillo/beta-cat 44.0 92 0.002 29.7 7.7 110 851-988 9-119 (120)
46 PF12717 Cnd1: non-SMC mitotic 43.3 1.3E+02 0.0028 32.1 9.3 93 862-990 1-93 (178)
47 cd03567 VHS_GGA VHS domain fam 42.4 1E+02 0.0022 31.8 7.9 57 652-713 48-112 (139)
48 PF12755 Vac14_Fab1_bd: Vacuol 41.9 1.5E+02 0.0032 28.6 8.4 73 685-759 25-97 (97)
49 cd03569 VHS_Hrs_Vps27p VHS dom 39.6 1.3E+02 0.0028 31.1 8.3 57 652-713 51-110 (142)
50 PF08427 DUF1741: Domain of un 38.5 3.2E+02 0.0069 30.9 11.6 104 842-955 58-172 (237)
51 KOG1077 Vesicle coat complex A 38.0 1E+03 0.023 31.0 19.0 80 655-736 273-359 (938)
52 KOG2023 Nuclear transport rece 36.5 4E+02 0.0087 34.2 12.7 153 593-756 127-283 (885)
53 KOG1967 DNA repair/transcripti 36.4 2.8E+02 0.0062 36.7 11.8 162 704-902 143-308 (1030)
54 PF04510 DUF577: Family of unk 36.3 2.8E+02 0.006 29.7 9.9 153 773-990 6-165 (174)
55 PF08161 NUC173: NUC173 domain 32.9 6.7E+02 0.014 27.5 12.8 163 1076-1272 18-195 (198)
56 PF12830 Nipped-B_C: Sister ch 32.7 6.2E+02 0.014 27.2 12.6 77 646-736 12-97 (187)
57 PF09324 DUF1981: Domain of un 32.2 1.6E+02 0.0035 27.7 6.8 53 934-986 33-85 (86)
58 cd03565 VHS_Tom1 VHS domain fa 29.6 5.9E+02 0.013 26.2 11.2 60 649-713 46-111 (141)
59 PF12783 Sec7_N: Guanine nucle 28.8 4.3E+02 0.0093 27.7 10.4 82 863-967 36-121 (168)
60 PF10521 DUF2454: Protein of u 28.7 5E+02 0.011 29.9 11.7 132 843-993 113-257 (282)
61 PRK09687 putative lyase; Provi 28.5 8.8E+02 0.019 28.0 13.6 92 647-758 28-120 (280)
62 PF13646 HEAT_2: HEAT repeats; 27.0 1.3E+02 0.0028 27.4 5.4 71 652-747 10-80 (88)
63 smart00288 VHS Domain present 26.5 2.4E+02 0.0051 28.7 7.5 58 653-714 48-108 (133)
64 COG5240 SEC21 Vesicle coat com 25.9 5.8E+02 0.012 32.3 11.4 125 660-803 393-535 (898)
65 PF02985 HEAT: HEAT repeat; I 25.7 1.2E+02 0.0025 22.5 3.8 27 644-670 2-28 (31)
66 KOG1766 Enhancer of rudimentar 25.1 1.3E+02 0.0027 28.8 4.6 31 925-955 13-44 (104)
67 KOG4535 HEAT and armadillo rep 24.6 1.4E+03 0.031 28.4 18.5 58 946-1003 281-338 (728)
68 PF13513 HEAT_EZ: HEAT-like re 22.7 1.2E+02 0.0025 25.4 3.8 50 938-987 6-55 (55)
69 KOG1062 Vesicle coat complex A 22.3 1.2E+03 0.027 30.7 13.8 84 692-785 298-396 (866)
70 PLN03205 ATR interacting prote 22.1 2.4E+02 0.0053 33.7 7.2 86 585-673 317-403 (652)
71 PF12755 Vac14_Fab1_bd: Vacuol 21.7 5E+02 0.011 25.0 8.3 40 954-993 21-60 (97)
72 PF13513 HEAT_EZ: HEAT-like re 20.5 1.9E+02 0.0041 24.1 4.6 36 1231-1268 14-49 (55)
73 cd03561 VHS VHS domain family; 20.5 3.2E+02 0.0069 27.7 7.1 61 653-717 48-112 (133)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=5.3e-251 Score=2421.86 Aligned_cols=1267 Identities=56% Similarity=0.912 Sum_probs=1089.7
Q ss_pred hhcch-hHHHHHHHhhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC-CCCCCCC
Q 000795 10 YLKDA-CRIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSET-DSSIDNN 87 (1281)
Q Consensus 10 ~~~~~-~r~v~~l~k~aqg~~~~~~~~~~~~~e~~lk~~~l~clv~~l~sl~~w~~~~~~~~~~~~~~~~~~-~~~~~~~ 87 (1281)
|..|+ |||||.|+|+|||.+++..++..|+||++||++||+|||+||+||++|+++++..++.......+. ..+....
T Consensus 499 ~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1780)
T PLN03076 499 NSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVENNLEPG 578 (1780)
T ss_pred CCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhccccccc
Confidence 46788 999999999999998877788899999999999999999999999999998765443221111111 0000000
Q ss_pred C----CCCCCCCCCCCcCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHhcCCCCCCHHHHHHHhhh
Q 000795 88 S----IPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKN 163 (1281)
Q Consensus 88 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~ 163 (1281)
. +.++++. ....++.++.+...+++.++|++|++|..+++|+.+||+|||+||+||+++|+++++|++||+||++
T Consensus 579 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~ 657 (1780)
T PLN03076 579 SLPVANGNGDEN-GEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKD 657 (1780)
T ss_pred cccccccccccc-cccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 0 0011110 1111222333345678899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcccCchhHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCCCCCCc
Q 000795 164 TTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSA 243 (1281)
Q Consensus 164 ~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~~f~~~ 243 (1281)
++||||++||||||+++++|++||++|++.|||+|++||+|||.||++||||||+|+||||||+||+|||+|||+.|.|+
T Consensus 658 ~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~ 737 (1780)
T PLN03076 658 ASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSA 737 (1780)
T ss_pred CCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhh
Q 000795 244 DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNK 323 (1281)
Q Consensus 244 d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~ 323 (1281)
|+||+||||+||||||+|||++|+|||+++||||+||+|+|+|||+|||++|||+|+++||++++|+.++.+++..+.++
T Consensus 738 D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~ 817 (1780)
T PLN03076 738 DTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNR 817 (1780)
T ss_pred HHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCcccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999887666555555566
Q ss_pred hcccccchhhhhchhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceEeccchhhHHHHHHHhhHHHHHHHHhhhhcCCcH
Q 000795 324 LLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDK 403 (1281)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~~W~~iLaalS~~l~~s~D~ 403 (1281)
+.|++.+++.+.|++.+++|+++++++++++++.++++..++.+.|+.++|.+|+|+||+++|+|++||||++|++++|+
T Consensus 818 ~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~~~s~d~ 897 (1780)
T PLN03076 818 ILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDE 897 (1780)
T ss_pred hhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 67888888888888888999999999999999988877666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccccchhhHHHHHHHHHHHhhcCCchhhchHHHHHHHHH
Q 000795 404 LATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSR 483 (1281)
Q Consensus 404 ~~~~~~L~Gfq~~i~ia~~l~l~~~rdafl~sL~kft~L~~~~~~~~Knv~airaLl~iA~~~G~~L~~sW~~IL~~is~ 483 (1281)
++++.||+||+.+|||||.|||+++||+||++|||||.|++|.+|++||++|+|+||+||+++||+|++||++||+||||
T Consensus 898 ~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISq 977 (1780)
T PLN03076 898 VVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSR 977 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccccchhhh-hhhccCCCCCccccCCCCCCcchhhhcCCccccCCCCCCCCCCCCHHHHHHH
Q 000795 484 IEHLQLLGEGAPTDASFLTVSNVEADE-KTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHF 562 (1281)
Q Consensus 484 le~lqli~~g~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~lt~~ei~~~ 562 (1281)
|||||||+.|++||+.+...|..+.+. +..++.+.|...++++++.++......++++++...++..+..++++++...
T Consensus 978 Lerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 1057 (1780)
T PLN03076 978 FEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNL 1057 (1780)
T ss_pred HHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccccccccccccccCCHHHHHHH
Confidence 999999999999887665544433322 2223344555544444433333333446777766555555667888999887
Q ss_pred hhhhhhhhhhhhchhhHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhhHHH
Q 000795 563 IANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNV 642 (1281)
Q Consensus 563 ~~~~~~~~~i~~~~id~iF~~S~~L~~eAi~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl~W~~iW~v 642 (1281)
..+++++++|+++.+|+||++|++|+++||++||+|||+||++||+++++||+|+|+||||||+|||+|||++|++||++
T Consensus 1058 ~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~ 1137 (1780)
T PLN03076 1058 VSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHV 1137 (1780)
T ss_pred HhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHH
Confidence 77778888899999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccc
Q 000795 643 LSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSN 722 (1281)
Q Consensus 643 l~~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~ 722 (1281)
+++||+++|||+|..||+||+|+|||++|||++++||++|+||++||+||++||.++.+.+|||+|++|+.+||++++++
T Consensus 1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHH
Q 000795 723 VKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFC 802 (1281)
Q Consensus 723 IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~ 802 (1281)
||||||+||+||+.|+.++++.+|+.||+++++|++|||+.++.+..++|.|||+||.+|++|+.++||||+||++||.|
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875556999999999999999999999999999999999
Q ss_pred HHHhhcCCcccccCCCCC----CCCCCCCCCCCCcccCCCCcccchhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHH
Q 000795 803 AVKLADGGLVCNEKGSVD----GSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILK 878 (1281)
Q Consensus 803 ~~~L~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~ 878 (1281)
+++++++.+.+....... ..+.. ......+...+.+.+++.++|||||++|++++.|+|+|||++||+|||++|+
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQS-GKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHhccccccccccccccccccccc-cccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999998764332111000 00000 0011112223345566788999999999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCC--CCCCCcccccHHHhHHHHHHHHHHHHHHhHHHHHh
Q 000795 879 DHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTS--HSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS 956 (1281)
Q Consensus 879 ~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~--~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~~ 956 (1281)
.||+.|++++|+.||++||||||+.++..++....++++++.. ...+.+.++|++|||++||+++++||++||+.|..
T Consensus 1377 ~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~ 1456 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP 1456 (1780)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987655433322111100 11235789999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhhhHHHhhhhcccccCCCCCCc
Q 000795 957 QLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQS 1036 (1281)
Q Consensus 957 ~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~~~~~~~~~~ 1036 (1281)
+|+++|++|.+||||+|++|||||++||++||.+||++|++++|++|+++|.++|+.|+|.|........ .|.....
T Consensus 1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T~p~~~~~~~~~~---~~~~~~~ 1533 (1780)
T PLN03076 1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATLPDFSYVVSGEY---MPAENIQ 1533 (1780)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCchhhcccccc---ccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999764321110 0110000
Q ss_pred cccccccCCCCCCCCCCchhhhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhc
Q 000795 1037 YADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELN 1116 (1281)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cvlqLllIq~~~eL~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN 1116 (1281)
..+.+.....+...+.......++....+.++||+||+||+|||++.+||++++.+||++|+.+|+++|.+||+||++||
T Consensus 1534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN 1613 (1780)
T PLN03076 1534 DSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKIN 1613 (1780)
T ss_pred ccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00000000000000111111122222244558999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHH
Q 000795 1117 SELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKA 1196 (1281)
Q Consensus 1117 ~~~~Lr~~L~k~g~~~~~~~PnLLkQE~~S~~~yl~iL~~m~~d~~~~~~~~~i~~~L~~lc~~il~~Y~~~~~~~~~~~ 1196 (1281)
+|++||++|||+|||+++++|||||||++|+++|++||||||+|+++.+.+.++++||+++|.+||++|+++++.+|++.
T Consensus 1614 ~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~~~~~~~~~l~~~c~~il~~y~~l~~~~~~~~ 1693 (1780)
T PLN03076 1614 SDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLAKEAEVESRLVELCEEVLQFYIETSTAGQDSE 1693 (1780)
T ss_pred CcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999998555222
Q ss_pred HhhhcccchhccCCchhhhhhhhhhhHHHHHHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHHhhhh
Q 000795 1197 VKQQRVVRWILPLGSARKEELAARTSLVVSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQSCIG 1276 (1281)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~r~i~a~~pvvv~iL~~~~~l~~~~F~~~~~~~ypll~~Li~~e~~~~evr~aL~~~f~~rvg 1276 (1281)
.+.+..++|.+|+|++++||++||+||||++|+||++||+++|++|+|.||||+++|++|||.++|||.||+.+|++|||
T Consensus 1694 ~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg 1773 (1780)
T PLN03076 1694 DSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVG 1773 (1780)
T ss_pred ccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhh
Confidence 22334469999999999999999999999999999999999999999999999999999998899999999999988999
Q ss_pred ccccC
Q 000795 1277 PILLQ 1281 (1281)
Q Consensus 1277 ~~~~~ 1281 (1281)
|++++
T Consensus 1774 ~~~~~ 1778 (1780)
T PLN03076 1774 PVLLQ 1778 (1780)
T ss_pred hhHhc
Confidence 99863
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-201 Score=1873.31 Aligned_cols=1092 Identities=48% Similarity=0.753 Sum_probs=937.8
Q ss_pred ch-hHHHHHHHhhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 000795 13 DA-CRIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPN 91 (1281)
Q Consensus 13 ~~-~r~v~~l~k~aqg~~~~~~~~~~~~~e~~lk~~~l~clv~~l~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (1281)
|| ||+|++|+|+|||+ ++++...+|+||.++|..+++||+++++||++|+++.+..++...+...... +...
T Consensus 420 nifer~v~~ltk~a~g~-~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~-~~~~----- 492 (1514)
T KOG0929|consen 420 NIFERLVNGLSKIAQGR-TGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTT-PIEN----- 492 (1514)
T ss_pred cHHHHHHhhHHHhhcCC-CccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCc-chhh-----
Confidence 67 99999999999995 4688999999999999999999999999999999986654443322211110 0000
Q ss_pred CCCCCCCCcCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHhcCCCCCCHHHHHHHhhhcCCCChhh
Q 000795 92 GEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETM 171 (1281)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~~~~l~k~~ 171 (1281)
.. .+. ..+...++++++|..|.+|. +++|+.+||.+|++||+||+++|+++.+|.+||+||+.+.+|||+.
T Consensus 493 ~~-------~s~-~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~ 563 (1514)
T KOG0929|consen 493 EL-------NSD-TQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTI 563 (1514)
T ss_pred hc-------cCc-cccccccChhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHH
Confidence 00 000 22334577899999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCchhHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCC-CCCCccHHHHHH
Q 000795 172 IGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS-SFTSADTAYVLA 250 (1281)
Q Consensus 172 igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~-~f~~~d~~y~l~ 250 (1281)
+|+|||+++++|++|||+||+.|||++++|++|||.||++||||||||||||+|++||+|||+|||+ .|.|||+||+||
T Consensus 564 igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLA 643 (1514)
T KOG0929|consen 564 LGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLA 643 (1514)
T ss_pred HHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhhhcccccc
Q 000795 251 YSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGI 330 (1281)
Q Consensus 251 ~siimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1281)
||+||||||+|||++|+|||++|||+||||||+|+|+|++||+.+||+|..+||+|.++...+...+.++..+..|.++.
T Consensus 644 fSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~ 723 (1514)
T KOG0929|consen 644 FSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGI 723 (1514)
T ss_pred HHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999887666666666677778877
Q ss_pred hhhhhchhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceEeccchhhHHHHHHHhhHHHHHHHHhhhhcCCcHHHHHHHH
Q 000795 331 LNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCL 410 (1281)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~L 410 (1281)
++...+++.....+..+ +..+++++.+..+.||.++|.+|||+||+.+|+|++||+|++|+.++|..+...|+
T Consensus 724 ~~l~~~~r~~~~~~s~~-------~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl 796 (1514)
T KOG0929|consen 724 LNLRSNSRMSAIDMSAS-------QSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCL 796 (1514)
T ss_pred cccchhhhhhHHHhhhh-------HHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccccc
Confidence 77666655444333322 23344445555789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccccchhhHHHHHHHHHHHhhcCCchhhchHHHHHHHHHHHHHHHh
Q 000795 411 QGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLL 490 (1281)
Q Consensus 411 ~Gfq~~i~ia~~l~l~~~rdafl~sL~kft~L~~~~~~~~Knv~airaLl~iA~~~G~~L~~sW~~IL~~is~le~lqli 490 (1281)
+||+.++||+|.|+|+..||||+++|++||.|+.+.+|+.||++++|+++.||.++||+|.++|.+|+.|++|+|++|+|
T Consensus 797 ~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli 876 (1514)
T KOG0929|consen 797 DGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLI 876 (1514)
T ss_pred cchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccchhhhhhhccCCCCCccccCCCCCCcchhhhcCCccccCCCCCCCCCCCCHHHHHHHhhhhhhhh
Q 000795 491 GEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLD 570 (1281)
Q Consensus 491 ~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~lt~~ei~~~~~~~~~~~ 570 (1281)
+.|++++..... .+.+. ... ..+|+|+..+.++.........++..+
T Consensus 877 ~sg~~~~~~~~~----~s~~~--------~~~-------------~~~~~~~~~~~~s~~e~~~~~~s~s~v-------- 923 (1514)
T KOG0929|consen 877 GSGSPPNKLPFV----VSQRE--------DYK-------------KPGGSYDSSGDGSRIENVGEKSSVSVV-------- 923 (1514)
T ss_pred cCCCCcccCcch----hhhch--------hcc-------------CCcccccccccccchhccccchhHHHH--------
Confidence 999987543221 11000 000 012344433333222222222233222
Q ss_pred hhhhchhhHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhhHHHHHHHHHHh
Q 000795 571 QIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSV 650 (1281)
Q Consensus 571 ~i~~~~id~iF~~S~~L~~eAi~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~~hf~~v 650 (1281)
.++|+||++|..++++||++||+|||+||++||.++++||+|+|||+|||++|||.|||++|++||.++++||+.|
T Consensus 924 ----i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~v 999 (1514)
T KOG0929|consen 924 ----IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSV 999 (1514)
T ss_pred ----HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCCCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhcc
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHH
Q 000795 651 GLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSV 730 (1281)
Q Consensus 651 ~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~I 730 (1281)
||++|..|++||+|+|||++|||++++||++|+||++||+||+++|.++.+++|||+|+||+. +|++||||+|
T Consensus 1000 g~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~i 1072 (1514)
T KOG0929|consen 1000 GCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNI 1072 (1514)
T ss_pred ccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCC
Q 000795 731 FSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGG 810 (1281)
Q Consensus 731 F~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~ 810 (1281)
|+|++.||.+.++.||..+|+++..|+.++|..+.+++.++|.||+.||.+|+++....++|++||+++|.|+.+++++
T Consensus 1073 f~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~- 1151 (1514)
T KOG0929|consen 1073 FKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG- 1151 (1514)
T ss_pred HHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-
Confidence 9999999999999999999999999999999988865569999999999999999999999999999999999999877
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHH
Q 000795 811 LVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWM 890 (1281)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~ 890 (1281)
.+.+. .+.+ ...+.+.+...|+|+|++|++++.|+|++||++|++++|+|+..||+.|..+||+
T Consensus 1152 -~~~~~----------~~~~-----~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We 1215 (1514)
T KOG0929|consen 1152 -VYNEK----------LKVG-----KDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWE 1215 (1514)
T ss_pred -cchhh----------cccc-----cccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHH
Confidence 12111 0000 0114456889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhc
Q 000795 891 GVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIR 970 (1281)
Q Consensus 891 ~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~ 970 (1281)
.+|+ +|||||+.++...... +..+|++|||++||+.+++||++||+.++.+|+.++.+|++|||
T Consensus 1216 ~v~~-~~fpIF~~~~~~~~~~---------------~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~ 1279 (1514)
T KOG0929|consen 1216 DVFR-ILFPIFDNVKLDEDES---------------EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIK 1279 (1514)
T ss_pred HHHH-heeecccccCcccchh---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 9999999998755431 33449999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhhhHHHhhhhcccccCCCCCCccccccccCCCCCCC
Q 000795 971 SPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSIN 1050 (1281)
Q Consensus 971 q~~~~la~ig~~~l~~Ll~~~g~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1281)
|+|+++||+|++||++|+.+||.+|++++|+++++++.++|++|+|.++..++...++. . ++
T Consensus 1280 ~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~~~~--~------------~~---- 1341 (1514)
T KOG0929|consen 1280 QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMSDIS--S------------EQ---- 1341 (1514)
T ss_pred CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccCCCc--c------------cc----
Confidence 99999999999999999999999999999999999999999999999998886544331 0 00
Q ss_pred CCCchhhhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHhhc
Q 000795 1051 DNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCL 1130 (1281)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~cvlqLllIq~~~eL~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~Lr~~L~k~g~ 1130 (1281)
++......+...+.....|.+ .+|| .++.+||++|+.+|++||.++++||++||+|++||.+||++|.
T Consensus 1342 ~e~~~~~~~~v~~~~~~~k~~-----------~~~~-~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~ 1409 (1514)
T KOG0929|consen 1342 NELSQTISNIVFYPATESKED-----------TDLL-GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGK 1409 (1514)
T ss_pred ccccccccccccccccchHHH-----------HHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 111111111122222233443 3444 7889999999999999999999999999999999999999995
Q ss_pred ccCCCCCCchhhhhHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhhhcccchhccCC
Q 000795 1131 VLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLG 1210 (1281)
Q Consensus 1131 ~~~~~~PnLLkQE~~S~~~yl~iL~~m~~d~~~~~~~~~i~~~L~~lc~~il~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 1210 (1281)
+++ +|||||||++|+++||.|||+||.|+++.+ +++++||+++|.+||++|+++..+++
T Consensus 1410 ~~~--~pnLL~qE~~s~~~~l~~lf~~~~~~~~~~--~~i~~~l~~~c~~~l~~y~~~~~~~~----------------- 1468 (1514)
T KOG0929|consen 1410 GSQ--KPNLLRQETSSLACYLDILFRLLKDDPRVS--EEIESRLVTVCSEVLKGYLSLTSETH----------------- 1468 (1514)
T ss_pred cCC--CcchhhHHHHHHHHHHHHHHHHhccCcccc--HHHHHHHHHHHHHHHHHHHhccccch-----------------
Confidence 555 999999999999999999999999999866 99999999999999999999999888
Q ss_pred chhhhhhhhhhhHHHHHHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHHhhh
Q 000795 1211 SARKEELAARTSLVVSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQSCI 1275 (1281)
Q Consensus 1211 ~~~~r~i~a~~pvvv~iL~~~~~l~~~~F~~~~~~~ypll~~Li~~e~~~~evr~aL~~~f~~rv 1275 (1281)
+|| +.. +++.|..|.|.+|++||+++.++ .++++|++++.||. ||
T Consensus 1469 -------~a~----------~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~r~~~~~~~l-r~ 1513 (1514)
T KOG0929|consen 1469 -------EAW----------LTP-SDEEFSARAPLYYALLCAMCAFD-LDPELRHLLRFFFL-RV 1513 (1514)
T ss_pred -------hhh----------cCC-cHHHHhccCchHHHHHHHHHHcC-CcHHHHHHHHHhhh-hc
Confidence 455 111 66666666666666666666666 34466666666665 44
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-98 Score=916.59 Aligned_cols=882 Identities=25% Similarity=0.383 Sum_probs=654.4
Q ss_pred hhcch-hHHHHHHHhhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCC
Q 000795 10 YLKDA-CRIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNS 88 (1281)
Q Consensus 10 ~~~~~-~r~v~~l~k~aqg~~~~~~~~~~~~~e~~lk~~~l~clv~~l~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1281)
|-.|+ |-+.+.|+|.|+++.. . .+ ++...+|. +.++.+|.+-+.......+.
T Consensus 442 ~csnlfedl~k~LtknafP~sg-~---~t-----t~~i~~l~--l~~v~~l~e~~~~~l~~~d~---------------- 494 (1386)
T KOG0928|consen 442 YCSNLFEDLIKLLTKNAFPVSG-P---LT-----TASILPLD--LEGVLGLAENMIDELQDSDR---------------- 494 (1386)
T ss_pred hhhhhHHHHHHHHHHccCCccc-c---cc-----cccccchH--HHHHHHHHHHHHhhccccCc----------------
Confidence 44677 9999999999996532 1 11 23444555 45777777766543321110
Q ss_pred CCCCCCCCCCCcCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHhcCCCC--CCHHHHHHHhhhcCC
Q 000795 89 IPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG--DSPEEVASFLKNTTG 166 (1281)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~--~~p~~ia~fL~~~~~ 166 (1281)
++.+..+++ .+..-++.+| +|.++..|++.||+||||||+||+++|+|+ .+|..+|.||+++++
T Consensus 495 ----~ef~~~k~e---------~~v~~iR~rk-~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~r 560 (1386)
T KOG0928|consen 495 ----EEFWTDKCE---------VWVLFIRSRK-RKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPR 560 (1386)
T ss_pred ----CccccCCcc---------hhhhhhccch-hhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCcc
Confidence 011111111 1222333343 799999999999999999999999999998 589999999999999
Q ss_pred CChhhHhhhcccCchhHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCC-CCCCCccH
Q 000795 167 LNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP-SSFTSADT 245 (1281)
Q Consensus 167 l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np-~~f~~~d~ 245 (1281)
|||++||+|||++++ .+||++|++.|||+||++|+|||.||++||||||+|+|+|+||+||+|||++|+ ++|.++|+
T Consensus 561 LdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDa 638 (1386)
T KOG0928|consen 561 LDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDA 638 (1386)
T ss_pred ccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 999999999999987 789999999999999999999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhhhc
Q 000795 246 AYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLL 325 (1281)
Q Consensus 246 ~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 325 (1281)
||+|||||||||||+||||||+|||++||+||+||+|+|+|||++||++||++|+.+||+|++++++.....+
T Consensus 639 vFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~------- 711 (1386)
T KOG0928|consen 639 VFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFE------- 711 (1386)
T ss_pred hhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhhhH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999888764322100
Q ss_pred ccccchhhhhchhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceEeccchhhHHHHHHHhhHHHHHHHHhhhhcCCcHHH
Q 000795 326 GLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLA 405 (1281)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~~W~~iLaalS~~l~~s~D~~~ 405 (1281)
-.|. .++ .+++.++..+.......+.|.||..+|+|++||++++|+.+.++++
T Consensus 712 --------~~W~-----------~L~--------~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I 764 (1386)
T KOG0928|consen 712 --------YRWI-----------NLI--------SRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTI 764 (1386)
T ss_pred --------HHHH-----------HHH--------hcccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHHHH
Confidence 0121 111 1244455666666777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCCCccc----c------chhhHHHHHHHHHHHhhcCCchhhchH
Q 000795 406 TNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAAD----M------KQKNVDAVKAIISIAIEDGNHLQEAWE 475 (1281)
Q Consensus 406 ~~~~L~Gfq~~i~ia~~l~l~~~rdafl~sL~kft~L~~~~~----~------~~Knv~airaLl~iA~~~G~~L~~sW~ 475 (1281)
++.|++|+++++.|++.+|+.+..|..+.+|||||.|.+|.. . ..|-..|..|++-+|+..|++++.+|+
T Consensus 765 ~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~ 844 (1386)
T KOG0928|consen 765 LQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWR 844 (1386)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHHHH
Confidence 999999999999999999999999999999999999876542 1 236667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccchhhhhhhc-cCCCCCccccCCCCCCcchhhhcCCccccCCCCCCCCCCC
Q 000795 476 HILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQK-SMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLV 554 (1281)
Q Consensus 476 ~IL~~is~le~lqli~~g~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~l 554 (1281)
.|++|+.+|.++++++..+-++..+.+ ....-.+... +...|. .+ +++ ..+...+.++|.+. .+...++.+
T Consensus 845 nI~~~~l~l~r~~llp~~~~e~~~~~~--~~~~~~~~~~~~~~~~~-~k--~~~--ss~Lls~fs~~Ls~-d~e~~~~~P 916 (1386)
T KOG0928|consen 845 NIVECLLQLNRLVLLPLRLIEDLKNEP--ELLKLNKLPVPQQEISI-NK--PRK--SSGLLSRFSSYLSG-DEEEERPCP 916 (1386)
T ss_pred HHHHHHHHHHhhccCcHhhhhhhhcCc--cccccCCCCCCccccCc-cc--ccc--cchHHHHHHHhcCC-cccccCCCC
Confidence 999999999999998877644333221 0000000000 000000 00 001 11122333444432 233455678
Q ss_pred CHHHHHHHhhhhhhhhhhhhchhhHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhccccccc
Q 000795 555 TPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRL 634 (1281)
Q Consensus 555 t~~ei~~~~~~~~~~~~i~~~~id~iF~~S~~L~~eAi~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl 634 (1281)
|+++++....+ .+||..|+++++|++|+.|..+++.+++++|...+...-...++.+.|++++|+.|...|.+||.+
T Consensus 917 tee~l~~~~~a---~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l 993 (1386)
T KOG0928|consen 917 TEEELSASKKA---LECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILL 993 (1386)
T ss_pred cHHHHhhhHHH---hhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEe
Confidence 99999876654 578999999999999999999999999999999987631112467899999999999999999999
Q ss_pred chhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCC--chHHHHHHHHHH
Q 000795 635 VWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSG--SAEIRELIIRCI 712 (1281)
Q Consensus 635 ~W~~iW~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~--~~eIre~iL~cl 712 (1281)
.|..+.+++-..|+..-..+.. ..-.|+-.+..++.|.+..++. .-.++++++..+....+ ....-+.|.--+
T Consensus 994 ~w~~~~e~ll~~~~~~~~~~~~-lvek~v~gl~rv~~rll~yk~~----l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~ 1068 (1386)
T KOG0928|consen 994 SWFAVYEHLLGLLIQTLMGSPL-LVEKAVSGLLRVVNRLLPYKEF----LSDELLDSLRILLKLDPKILDAFLDKIAIFV 1068 (1386)
T ss_pred eehhhHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHhhhhhh----hhHHHhhhHHHHHhhcHHHHHHHHHHHHHHH
Confidence 9998888887777654332222 3334555667789999885441 23567888887765433 456778888889
Q ss_pred HHHHHhccccccc--CcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCc-
Q 000795 713 SQMVLSRVSNVKS--GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS- 789 (1281)
Q Consensus 713 ~qmi~~~~~~IkS--GWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~- 789 (1281)
.+++.++..++++ ||+++|..|..+++ ++..-..+|..+...+.|-.+.. ++.|..||+|...|+..+..+
T Consensus 1069 ~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~~a~~~~~~~~l~~m~e~~hl~----~~~fe~~v~~~~~fve~~~~~~ 1142 (1386)
T KOG0928|consen 1069 SKLVKANAANVHSKDGWALLFSLLELTAR--HPEADFLKFYRLLSKMSEASHLT----PDNFELYVDCGSTFVEARVGQI 1142 (1386)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhc--CCchhHHHHHHHHHHhhccccCC----hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988866 99999999999986 45555667777776666655443 589999999999999553211
Q ss_pred cccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCC-CCcccchhhhHHHHHHHhhhccCChHHHHHH
Q 000795 790 DVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSF-SDKDDNSSFWVPLLTGLSKLTSDSRSTIRKS 868 (1281)
Q Consensus 790 niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~ 868 (1281)
.-++..+ |.++..+. ...++..+ .++...++... .........|.+|+.++.++|.++|.+||+.
T Consensus 1143 ~~~l~~l-------de~s~sg~-~~~kw~~~------~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~ 1208 (1386)
T KOG0928|consen 1143 MRSLSLL-------DEMSSSGE-VLDKWEIE------AKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNA 1208 (1386)
T ss_pred HHhcchh-------hhhccccc-chhHHHHH------HhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 1111111 11111110 00000000 00000011101 1122244599999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHH
Q 000795 869 SLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFI 948 (1281)
Q Consensus 869 Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~ 948 (1281)
||+.+.+++..-+..+.+..|..||+.|+||+++.+....... .+...-+..|..+|.+.++++|.
T Consensus 1209 aL~~lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~--------------~~~~~~me~t~~~~~~Ll~k~~L 1274 (1386)
T KOG0928|consen 1209 ALTKLQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDA--------------SEKGNEMEVTLLLATKLLSKVFL 1274 (1386)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhccc--------------ccccchHHHHHHHHhhhhHHHHH
Confidence 9999999988889999999999999999999999987643221 11111457899999999999999
Q ss_pred HhHHHHH------hhHHHHHHHHHHhhccC-----CcchhHHHHHHHHHHHHh--hCCCC-------CHHHHHHHHHHHH
Q 000795 949 CFFDVVR------SQLPGVVSILTGFIRSP-----IQGPASTGVAALLHLAGE--LGSRL-------SQDEWREILLALK 1008 (1281)
Q Consensus 949 ~yf~~l~------~~l~~~L~lL~~ci~q~-----~~~la~ig~~~l~~Ll~~--~g~~f-------~~~~W~~i~~~~~ 1008 (1281)
+++..+. .+|-++++.+..|+.-+ .+.+-.+....++..+.. .++-+ .+.-|+.....+.
T Consensus 1275 ~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~~ 1354 (1386)
T KOG0928|consen 1275 QELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERLN 1354 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHHH
Confidence 9998765 47999999999999744 466677777777666554 22111 2236776665544
Q ss_pred HHHhhhhhhHHHhh
Q 000795 1009 ETTASTLPSFVKVL 1022 (1281)
Q Consensus 1009 ~l~~~t~~~~~~~~ 1022 (1281)
.+.|+...-+
T Consensus 1355 ----~~~p~l~~El 1364 (1386)
T KOG0928|consen 1355 ----KIAPSLRDEL 1364 (1386)
T ss_pred ----hcCchhhhhh
Confidence 3566655433
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=3.5e-78 Score=757.64 Aligned_cols=755 Identities=27% Similarity=0.398 Sum_probs=589.6
Q ss_pred HHHHHHHHHHHHHHHHccCchhhHHHHHhcCCCC-CCHHHHHHHhhhcCC-CChhhHhhhcccCchhHHHHHHHHHhcCC
Q 000795 118 QRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFLKNTTG-LNETMIGDYLGEREEFSLKVMHAYVDSFN 195 (1281)
Q Consensus 118 ~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~-~~p~~ia~fL~~~~~-l~k~~igeyLg~~~~~~~~vl~~y~~~~d 195 (1281)
..|++|..+++++..||.+|++||..|.+.+++. ++|.++|.||..+.+ +||+.+|+|||++++.|..||++|+++||
T Consensus 263 ~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fd 342 (1024)
T COG5307 263 GIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFD 342 (1024)
T ss_pred ccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcC
Confidence 3678899999999999999999999999999997 589999999998877 99999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCCCCCCc-cHHHHHHHHHHHhhhhhhhcccCCCCCHHHH
Q 000795 196 FKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSA-DTAYVLAYSVIMLNTDAHNSMVKDKMTKADF 274 (1281)
Q Consensus 196 f~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~~f~~~-d~~y~l~~siimLntdlhn~~~k~kmt~~~F 274 (1281)
|+|++||+|||.||+.||||||+|+|||||++||++||+|||+.|.++ |+||+||||+||||||+|||++|.|||++||
T Consensus 343 Fk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df 422 (1024)
T COG5307 343 FKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDF 422 (1024)
T ss_pred cCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhccccChhhhccccHHHH
Confidence 999999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhhhhhhhhhcccccchhhhhchhHHHHHhhhhHHHHHHH
Q 000795 275 IRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRI 354 (1281)
Q Consensus 275 i~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1281)
++|++|+|+|+|||++||+++|++|+++||++++++......... .|..... ....+
T Consensus 423 ~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~---------------~~~~~~s--------s~~~~ 479 (1024)
T COG5307 423 SKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPED---------------NWPSLDS--------SFTNI 479 (1024)
T ss_pred HhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccc---------------cchhhhh--------hhhhh
Confidence 999999999999999999999999999999999987643221111 1110000 00000
Q ss_pred HHHhhhccCCCCCceEeccchhhHHHHHHHhhHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 000795 355 QEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVT 434 (1281)
Q Consensus 355 ~~~~~~~~~~~~~~f~~~~~~~~vr~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~L~Gfq~~i~ia~~l~l~~~rdafl~ 434 (1281)
. .. +++......+.+.+|+.++++.+|.+++++++..++.++....+..|.+ +|+.|+++.+|++|+.
T Consensus 480 ~-~~----~rd~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~~~~~~ 547 (1024)
T COG5307 480 A-EF----GRDNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTR-------IAANFDFNDPRDAFLE 547 (1024)
T ss_pred h-hc----ccccccchhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccc-------hhhcceecchhHHHHH
Confidence 0 01 1112222356788999999999999999999999999999877776665 9999999999999999
Q ss_pred HHHHhccCCCccccchhhHHHHHHHHHHHhhcCCchhhchHHHHHHHHHHHHHHHhcCCCCCCccccccccchhhhhhhc
Q 000795 435 SVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQK 514 (1281)
Q Consensus 435 sL~kft~L~~~~~~~~Knv~airaLl~iA~~~G~~L~~sW~~IL~~is~le~lqli~~g~~~~~~~~~~~~~~~~~~~~~ 514 (1281)
+++++|.+++.. .+.|+++...|.+++.+++++++.+.|+.|.. +. + +++-..+...+
T Consensus 548 ~~s~~t~l~~~S-----------------~~~~~~~~~~~~d~~~~is~~~~~~~i~~~~~-~q--l--~~v~~~~~~~k 605 (1024)
T COG5307 548 SLSEFTTLINSS-----------------VSEGPYLFIPSEDSLLSISVLELAARIGRGFE-DQ--L--SDVKLFRLRSK 605 (1024)
T ss_pred HhhccCCccccC-----------------ccccccccCccccccchhhHHHHHHHhcccch-hh--c--chhHHhHHhhc
Confidence 999999887544 78899999999999999999999999998872 21 1 11111000000
Q ss_pred cCCCCCccccCCCCCCcchhhhcCCccccCCCCCCCCCCCCHHHHHHHhhhhhhhhhhhhchhhHHHHhcccCCH-HHHH
Q 000795 515 SMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNS-EAIV 593 (1281)
Q Consensus 515 s~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~lt~~ei~~~~~~~~~~~~i~~~~id~iF~~S~~L~~-eAi~ 593 (1281)
. ..+...+.+.... ... .....+...-..... ...++. .......++ ....++++...+.++. .+++
T Consensus 606 ~-~~~~i~~s~~~~~--i~~-~~~~~~~~~l~~~~~--~~~~~~-~~~~~~~~~-----~~~~~~i~~~~s~~s~~~~~l 673 (1024)
T COG5307 606 S-GNKEILSSSLLSN--IEN-KSLKLYLSSLIEDGK--HFSPSI-VKKLGSPEL-----PKLNPDISSGKSKLSVWSAVL 673 (1024)
T ss_pred c-ccccccchhhhhh--hhh-hHhhhhhhhhcCCCc--cccccc-cccccCccc-----cccCcccccccccccccchHH
Confidence 0 0000000000000 000 000000000000000 000100 000000011 1236788999999999 8999
Q ss_pred HHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHh
Q 000795 594 AFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKF 673 (1281)
Q Consensus 594 ~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~kf 673 (1281)
+++++++.... ..| .+|+.++++++||.||+.+ ..||+++...+..++++.+..+..+++|+.+|+.++|
T Consensus 674 ~~~k~~~~~d~------~~~---~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f 743 (1024)
T COG5307 674 SVFKAILSSDL------PSP---PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRF 743 (1024)
T ss_pred HHHHHHHhccC------CCC---CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhccccccccchhcccchhhhhcccc
Confidence 99999999321 123 9999999999999999988 9999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000795 674 LEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETM 753 (1281)
Q Consensus 674 Le~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l 753 (1281)
++.+|+.++.||..|+.|+++.+.......|++..+.|..++++++...+.+| +++|.++..+..... +...++.+
T Consensus 744 ~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~~~~s~~ 819 (1024)
T COG5307 744 LEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSST---LRYILSSL 819 (1024)
T ss_pred CChhhhcchhHHHHHhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccch---hhhHHHHh
Confidence 99999999999999999999999888889999999999999999999999999 999999988764322 44455544
Q ss_pred HHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCc
Q 000795 754 EKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPD 833 (1281)
Q Consensus 754 ~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1281)
.. .|. +. .+.++|.+.+-+-.....+..++.+.+.+.++++..-..... |.-. ..
T Consensus 820 ~~--~e~---v~-s~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----wk~~---------------~~ 874 (1024)
T COG5307 820 SN--DEL---VL-SQENLFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVEN----WKNL---------------SS 874 (1024)
T ss_pred cc--hhh---hh-ChhhHHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHH----HHHH---------------HH
Confidence 32 122 22 123889999988888887777788888888887765444322 1000 00
Q ss_pred ccCCCCcccchhhhHHHHHHHhhh-ccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCC
Q 000795 834 LQSFSDKDDNSSFWVPLLTGLSKL-TSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPD 912 (1281)
Q Consensus 834 ~~~~~~~~~~~~lW~pLL~~L~~l-~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~ 912 (1281)
....++...+.|+++|.++.++ ++-...++ |..+..++..|...+|+.+++.-++|++.......-...
T Consensus 875 --~~~~~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~ 944 (1024)
T COG5307 875 --VLSANSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDKT 944 (1024)
T ss_pred --HHHhhhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccccc
Confidence 0011122368999999999998 46678888 999999999999999999999999999988763211100
Q ss_pred CCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhC
Q 000795 913 KDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELG 992 (1281)
Q Consensus 913 ~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g 992 (1281)
... +++..-+|+++|...|+...+.+|..+|+.+. .+.+.+.+++.| .+|.+++...+.
T Consensus 945 -------~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~ 1003 (1024)
T COG5307 945 -------NLD-NDEIELVWASTDLLAALKEFIELFNSIFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAI 1003 (1024)
T ss_pred -------ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhH
Confidence 111 23566799999999999999999999999999 999999999999 799999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 000795 993 SRLSQDEWREILLALKETT 1011 (1281)
Q Consensus 993 ~~f~~~~W~~i~~~~~~l~ 1011 (1281)
..|.+-.|+++-..+.++|
T Consensus 1004 ~~~~~~~~n~~~~~~~~~~ 1022 (1024)
T COG5307 1004 ETLEEILWNKIDVPTNELF 1022 (1024)
T ss_pred HHHhhhhHHHhhcccchhc
Confidence 9999999999988776655
No 5
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-54 Score=453.84 Aligned_cols=193 Identities=51% Similarity=0.881 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhcCCCCCCHHHHHHHhhhcCCCChhhHhhhcccCchhHHHHHHHHHhcCCCCCC
Q 000795 120 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 199 (1281)
Q Consensus 120 ~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~ 199 (1281)
+++...+..|-.+||.+|+|||+||+++.++..+|++||+||+..+||+|++||+|||++++||++||++|++.+.|.++
T Consensus 59 ~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dl 138 (395)
T KOG0930|consen 59 KQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDL 138 (395)
T ss_pred HHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccc
Confidence 34555678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCCCCCCccHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHhhc
Q 000795 200 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 279 (1281)
Q Consensus 200 ~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~ 279 (1281)
+++.|||+||-+||||||+|||||+||+||+|||-|||++|.|+|++|+|+||+|||||.|||||||+|-+++-||.+||
T Consensus 139 nlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNr 218 (395)
T KOG0930|consen 139 NLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNR 218 (395)
T ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCcccccCCCCC
Q 000795 280 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSA 312 (1281)
Q Consensus 280 ~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~ 312 (1281)
|||.|.|+|+|.|.++|++|+++|+++++|...
T Consensus 219 gineggdlpee~LrnlyeSi~~epFkIPeddgn 251 (395)
T KOG0930|consen 219 GINEGGDLPEELLRNLYESIKNEPFKIPEDDGN 251 (395)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCCCCcccCC
Confidence 999999999999999999999999999998754
No 6
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=5e-52 Score=441.23 Aligned_cols=183 Identities=60% Similarity=1.012 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhcCCC-CCCHHHHHHHhhhcCCCChhhHhhhcccCchhHHHHHHHHHhcCCCCCCC
Q 000795 122 YKIELQKGISLFNRKPSKGIEFLINSKKV-GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 200 (1281)
Q Consensus 122 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i-~~~p~~ia~fL~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~ 200 (1281)
+|..+++|+.+||+||++||+||++.+++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 36789999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCCCCC-CccHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHhhc
Q 000795 201 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT-SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 279 (1281)
Q Consensus 201 ~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~~f~-~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~ 279 (1281)
||+|||.||.+|+||||+|+|||||++||+|||+|||+.+. |+|++|+||||+||||||+|||++|+|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCcc
Q 000795 280 GIDDGKDLPEEYLGVLYDQIVKNEI 304 (1281)
Q Consensus 280 ~~~~~~d~~~~~L~~iY~~I~~~~i 304 (1281)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 7
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.7e-51 Score=440.33 Aligned_cols=185 Identities=53% Similarity=0.965 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHccCchhhHHHHHhcCCC--CCCHHHHHHHhhhcCCCChhhHhhhcccCchhHHHHHHHHHhcCCCC
Q 000795 120 RAYKIELQKGISLFNRKPSKGIEFLINSKKV--GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFK 197 (1281)
Q Consensus 120 ~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i--~~~p~~ia~fL~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~ 197 (1281)
|++|..+++|+.+||.+|++||+||++.|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 5788999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCC--CCCCccHHHHHHHHHHHhhhhhhhcccCCCCCHHHHH
Q 000795 198 GMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFI 275 (1281)
Q Consensus 198 ~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~--~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi 275 (1281)
|+++++|||.||.+|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++||
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHhhCcc
Q 000795 276 RNNRGIDDGKDLPEEYLGVLYDQIVKNEI 304 (1281)
Q Consensus 276 ~n~~~~~~~~d~~~~~L~~iY~~I~~~~i 304 (1281)
+|++|+++|.++|+++|++||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 8
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=3.2e-51 Score=436.60 Aligned_cols=183 Identities=57% Similarity=0.946 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhcCCCC-CCHHHHHHHhhhcCCCChhhHhhhcccCchhHHHHHHHHHhcCCCCCCC
Q 000795 122 YKIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 200 (1281)
Q Consensus 122 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~-~~p~~ia~fL~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~ 200 (1281)
+|..+.+|+.+||.+|++||+||++.|+++ ++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 467899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCCCCC--CccHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHhh
Q 000795 201 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT--SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNN 278 (1281)
Q Consensus 201 ~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~~f~--~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~ 278 (1281)
||+|||.||.+|+||||+|+|||||++||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhCcc
Q 000795 279 RGIDDGKDLPEEYLGVLYDQIVKNEI 304 (1281)
Q Consensus 279 ~~~~~~~d~~~~~L~~iY~~I~~~~i 304 (1281)
+|+++|.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 9
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-51 Score=451.71 Aligned_cols=196 Identities=43% Similarity=0.794 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhcCCCCCCHHHHHHHhhhcCCCChhhHhhhccc-CchhHHHHHHHHHhcCCCCCCC
Q 000795 122 YKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGE-REEFSLKVMHAYVDSFNFKGMD 200 (1281)
Q Consensus 122 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ia~fL~~~~~l~k~~igeyLg~-~~~~~~~vl~~y~~~~df~~~~ 200 (1281)
+|....-|..+||.||.|||+||++.||++++|..+|+||+...||+|+|||||||+ .++||..||+++|+.|||++|.
T Consensus 197 ~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssme 276 (627)
T KOG0931|consen 197 RKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSME 276 (627)
T ss_pred HHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccch
Confidence 445556699999999999999999999999999999999999999999999999998 5799999999999999999999
Q ss_pred hHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhhhCCC---CCCCccHHHHHHHHHHHhhhhhhhcccC--CCCCHHHHH
Q 000795 201 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS---SFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFI 275 (1281)
Q Consensus 201 ~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~~Np~---~f~~~d~~y~l~~siimLntdlhn~~~k--~kmt~~~Fi 275 (1281)
+|+|||+|...||+|||||||||++|+||.|||.|||. .|.|.|++|+|||+|||||||+|+|||| +||+.+|||
T Consensus 277 lDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFi 356 (627)
T KOG0931|consen 277 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFI 356 (627)
T ss_pred HHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHH
Confidence 99999999999999999999999999999999999998 4999999999999999999999999999 899999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHhhCcccccCCCCCchhhh
Q 000795 276 RNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQ 317 (1281)
Q Consensus 276 ~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~ 317 (1281)
||.||.|+|.|+|++.|.+||++|+++|++-.+||...+++.
T Consensus 357 kNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVqkV 398 (627)
T KOG0931|consen 357 KNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQKV 398 (627)
T ss_pred HhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHHHH
Confidence 999999999999999999999999999999999998765543
No 10
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-43 Score=433.53 Aligned_cols=630 Identities=16% Similarity=0.166 Sum_probs=447.1
Q ss_pred eccchhhHHHHHHHhhHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccCC-------
Q 000795 371 AVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLH------- 443 (1281)
Q Consensus 371 ~~~~~~~vr~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~L~Gfq~~i~ia~~l~l~~~rdafl~sL~kft~L~------- 443 (1281)
..+..+..+.|....|..++++++..+.++.|+.+.+..+.+....+..+|..+-+++.++++.+||+|+...
T Consensus 518 ~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~l 597 (1610)
T KOG1848|consen 518 RQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRL 597 (1610)
T ss_pred cceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHH
Confidence 4455678888999999999999999999999999999999999999999999999999999999999997521
Q ss_pred ----------------------------------------------CccccchhhHHHHHHHHHHHhhcCCchhhchHHH
Q 000795 444 ----------------------------------------------CAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHI 477 (1281)
Q Consensus 444 ----------------------------------------------~~~~~~~Knv~airaLl~iA~~~G~~L~~sW~~I 477 (1281)
++..++.||+.++|+.++++..+-+.++.+|.++
T Consensus 598 r~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~ll 677 (1610)
T KOG1848|consen 598 RCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLL 677 (1610)
T ss_pred hhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 0123567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccchhhhhhhccCCCCCccccCCCCCCcchhhhcCCccccCCCCCCCCCCCCHH
Q 000795 478 LTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPE 557 (1281)
Q Consensus 478 L~~is~le~lqli~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~ss~~~~~~~~~lt~~ 557 (1281)
+.+.+.|.+. .+.-|.... . ..+. ..+.+|...+.+
T Consensus 678 m~t~~~ls~~---~~m~p~qt~-l---------------------------------~v~t-------~~~~hp~~p~~~ 713 (1610)
T KOG1848|consen 678 MYTTSSLSQP---AYMEPLQTL-L---------------------------------AVIT-------SSSVHPIQPLTA 713 (1610)
T ss_pred HHHHHHhcch---hhcCHHHhh-H---------------------------------HHHh-------cCCCCCCCcchh
Confidence 9888655431 111010000 0 0000 001111111110
Q ss_pred HHHHHhhhhhhhhhhhhchhhHHHHhcccCCHHHHHHHHHHHHHhchhhcCCC-----CCCcc--chHHHHHHHHhhccc
Q 000795 558 QINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSP-----TDPRV--FSLTKLVEIAHYNMN 630 (1281)
Q Consensus 558 ei~~~~~~~~~~~~i~~~~id~iF~~S~~L~~eAi~~fv~ALc~vS~eel~~~-----~~pr~--F~LqKLveVa~~Nm~ 630 (1281)
-+.. ..+ ..+.+.-.+++|.++++++..+....++||.++|.+-+-.. ..-|. +-++-.+-.+..|-.
T Consensus 714 ~~~~-ynd----~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~ 788 (1610)
T KOG1848|consen 714 PRQS-YND----DLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKEL 788 (1610)
T ss_pred hHHH-HHH----HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHh
Confidence 0000 111 01222347899999999999999999999999998754211 11121 223333333333322
Q ss_pred ccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhh-------hhhhhHHHHhhcCCchH
Q 000795 631 RIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQN-------EFLRPFVIIMQKSGSAE 703 (1281)
Q Consensus 631 Rirl~W~~iW~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~-------~fLkPfe~Im~~~~~~e 703 (1281)
|-. .-|....+||.+.+||--.++..- +++.++.- .-...+.+|. .++-.++.....++..|
T Consensus 789 snq----~~~~naa~~l~t~~n~vl~s~~~~-~asals~d------a~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~e 857 (1610)
T KOG1848|consen 789 SNQ----FKIINAAPELRTRANNVLASILVD-VASALSND------ASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVE 857 (1610)
T ss_pred hhH----HHHHHhHHHHHHHHHHHHHHHHhh-hhhhhhcc------cccchhccceeeHhhhHHHHHHHHHHHhcCccce
Confidence 222 223455566666655433222211 12222210 0112233343 34444444445667888
Q ss_pred HHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcc---hhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHH
Q 000795 704 IRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAAD---ERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL 780 (1281)
Q Consensus 704 Ire~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~---~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~ 780 (1281)
+|---++||..++++.|+.+-+||..||++|+.++.. ++.++|++||+++++|++||++.+| .+|+.+||+++.
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp---~sci~~lidtl~ 934 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP---TSCILDLIDTLL 934 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC---hHHHHHHHHHHH
Confidence 8888999999999999999999999999999988653 4789999999999999999999999 799999999999
Q ss_pred HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHHHHhhhccC
Q 000795 781 TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSD 860 (1281)
Q Consensus 781 ~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d 860 (1281)
.|++|+.|+||||+||++||.++|+++...+...+. +..+..+++..+ ..-.+..-++.+|+.||..|+++|.|
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed----~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSED----SCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchh----hhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998633221111 111110100000 01112223789999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHH
Q 000795 861 SRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGA 940 (1281)
Q Consensus 861 ~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL 940 (1281)
+|+||||+|.||||+|+.+||+.|++..|+.|||.|++|+++...... .++| ++.+.+++|. ||+++++
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ew------ngkeiqkqwt-et~~lti 1077 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEW------NGKEIQKQWT-ETSCLTI 1077 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhh------cchhHhhhhh-hhhhhhH
Confidence 999999999999999999999999999999999999999999876633 2222 1344469998 9999999
Q ss_pred HHHHHHHHHhHHHHH------hhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHHHh
Q 000795 941 ECLVDIFICFFDVVR------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE--LGSRLSQDEWREILLALKETTA 1012 (1281)
Q Consensus 941 ~~lv~lf~~yf~~l~------~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~--~g~~f~~~~W~~i~~~~~~l~~ 1012 (1281)
.|++++|..||..|. ..|..+|++|.+.++..+.+++-.++.|||+++.. ...+.+...-.+++..|.. ++
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~-y~ 1156 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFIN-YG 1156 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhh-Hh
Confidence 999999999998765 46999999999999999999999999999999998 4467776666677776665 55
Q ss_pred hhhhhHHHhhhhcccccCCCCCCccccccccCCCCCCCCCCchhhhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHH--Hh
Q 000795 1013 STLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKL--HL 1090 (1281)
Q Consensus 1013 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cvlqLllIq~~~eL~~~--~~ 1090 (1281)
.+++... ..+ .++..+| -++++.++.+.|+. .+
T Consensus 1157 ~~~~~~s------------------------------------sas-------~~t~~kv--~~eiltgl~~~vqs~sk~ 1191 (1610)
T KOG1848|consen 1157 RFCEVSS------------------------------------SAS-------ERTLAKV--SQEILTGLIESVQSLSKA 1191 (1610)
T ss_pred hhccccc------------------------------------ccc-------hhHHHHH--HHHHHhhhHHHHHHHHhh
Confidence 5553210 000 1122334 36667777777664 45
Q ss_pred ccCCHHHHHHHHHHHHHh------hhhhhhhcCCHHHHHHHHH
Q 000795 1091 RLLSTTNVKILLDIFSSI------ASHAHELNSELVLQKKLQR 1127 (1281)
Q Consensus 1091 ~~l~~~~l~~ll~~L~~s------~~fA~~fN~~~~Lr~~L~k 1127 (1281)
+....+++...+..+.+. ..|+.+...++ ++..+..
T Consensus 1192 d~~~~e~~~~slll~~kai~yp~~~~ft~d~hvps-vq~avls 1233 (1610)
T KOG1848|consen 1192 DNFGIEEIKDSLLLVRKAIFYPESTSFTLDVHVPS-VQLAVLS 1233 (1610)
T ss_pred cchhHHHHHHHHHHhhhccccCCCchhhhhccCCh-HHHHHHh
Confidence 677888888888888884 66777777755 4444443
No 11
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-40 Score=384.75 Aligned_cols=957 Identities=18% Similarity=0.240 Sum_probs=605.5
Q ss_pred hHhhhcccC----chhHHHHHHHHHhcCCCCCCChHHHHHHHHccCc--CCC-----chHHHHHHHHHHHHHHhhh----
Q 000795 171 MIGDYLGER----EEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFR--LPG-----EAQKIDRIMEKFAERYCKC---- 235 (1281)
Q Consensus 171 ~igeyLg~~----~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~--Lpg-----E~q~idri~e~Fa~~y~~~---- 235 (1281)
++-+-+|+. -+..++.++.-|.+.| ++.= -+-|.|++... +|. =+-..|.++..||-++|+.
T Consensus 348 mlmdCiaecslpqaaLSidalKnivamld--eadQ-hSahkFfqdlEgllpkLiadsfscedDTalnnFalkccegvsdi 424 (1777)
T KOG1846|consen 348 MLMDCIAECSLPQAALSIDALKNIVAMLD--EADQ-HSAHKFFQDLEGLLPKLIADSFSCEDDTALNNFALKCCEGVSDI 424 (1777)
T ss_pred HHHHHHHhccCchHHhhHHHHHHHHHHHh--hHHH-HHHHHHHHhhhhhHHHHHhhccchhhHHHHHHHHHHHhcCcccc
Confidence 445555553 2455566666555543 1111 13466666554 442 3467899999999999975
Q ss_pred -CCC----------CCCCccHHHHHHHHHHHhhh-h-hhhcc----cC----CCCCHHHHHHhhcCCCCCCCCCHHHHHH
Q 000795 236 -NPS----------SFTSADTAYVLAYSVIMLNT-D-AHNSM----VK----DKMTKADFIRNNRGIDDGKDLPEEYLGV 294 (1281)
Q Consensus 236 -Np~----------~f~~~d~~y~l~~siimLnt-d-lhn~~----~k----~kmt~~~Fi~n~~~~~~~~d~~~~~L~~ 294 (1281)
.|+ ...|||.-|..|---.++|. . .|-.- -| .+-|..+|++....-.-.--+.+.+.++
T Consensus 425 cspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKdFmkalqeSgldiiaapaniee 504 (1777)
T KOG1846|consen 425 CSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKDFMKALQESGLDIIAAPANIEE 504 (1777)
T ss_pred cCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHHHHHHHHhcCceeeeccccHHH
Confidence 443 23588888888887777772 2 22211 11 2568899999886443234467888999
Q ss_pred HHHHHhhCcccccC-------CCCCchhhhhhhhhhhcccccchhhhhchhHHHHHhhhhHHHHHH--H--HHHhhhccC
Q 000795 295 LYDQIVKNEIKMNA-------DSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRR--I--QEQFKSKSG 363 (1281)
Q Consensus 295 iY~~I~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 363 (1281)
||+.|.....-... |...+..+.. ...+|....- +..+ ++..++.+ + -..++....
T Consensus 505 ideaiLdfnmlfeagfcgshaDaskplikil---------qdflntdagl--esaa--aggcliahaaTeslealkkrid 571 (1777)
T KOG1846|consen 505 IDEAILDFNMLFEAGFCGSHADASKPLIKIL---------QDFLNTDAGL--ESAA--AGGCLIAHAATESLEALKKRID 571 (1777)
T ss_pred HHHHHHhhhhccccccccCchhccccHHHHH---------HHhhhhhHHH--HHHh--hcceeeccccccCHHHHhhhcc
Confidence 99999876543221 1111111100 0011110000 0000 00111100 0 000111111
Q ss_pred CCCCceEeccchhhHHHHHHHhhHHHHHHHHhhhhc-----C----------------------CcHHHHHHHHHHHHHH
Q 000795 364 KSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQ-----S----------------------DDKLATNQCLQGFRHA 416 (1281)
Q Consensus 364 ~~~~~f~~~~~~~~vr~Mfe~~W~~iLaalS~~l~~-----s----------------------~D~~~~~~~L~Gfq~~ 416 (1281)
++ ..+.++.+.|...-.||..+..+++.++-. . ..++....-.+|++++
T Consensus 572 --dS--gcVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeKekniKeRqddaeCmeedglaka 647 (1777)
T KOG1846|consen 572 --DS--GCVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQDDAECMEEDGLAKA 647 (1777)
T ss_pred --cc--cceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhhcchhhhchhhHHHH
Confidence 11 134556666666667888888888877321 1 1134566778999999
Q ss_pred HHHHHhhCCchHHHHHHHHHHHhccCCC---------ccc-----------------------cchhhHHHHHHHHHHHh
Q 000795 417 VHVTAVMGMQTQRDAFVTSVAKFTYLHC---------AAD-----------------------MKQKNVDAVKAIISIAI 464 (1281)
Q Consensus 417 i~ia~~l~l~~~rdafl~sL~kft~L~~---------~~~-----------------------~~~Knv~airaLl~iA~ 464 (1281)
++++|..|....++..++-|+-...... |.+ ...-++.|+.+.|....
T Consensus 648 arlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehlaetlCceadLrdda 727 (1777)
T KOG1846|consen 648 ARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAETLCCEADLRDDA 727 (1777)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchh
Confidence 9999999999888888887776543211 110 12245678888899999
Q ss_pred hcCCchhhchHHHHHHHHHHHHHHHh--cCCCCCCccccc--cccchhhhh--------hhccCCCCCccccC-CCC---
Q 000795 465 EDGNHLQEAWEHILTCLSRIEHLQLL--GEGAPTDASFLT--VSNVEADEK--------TQKSMGFPSLKKKG-TLQ--- 528 (1281)
Q Consensus 465 ~~G~~L~~sW~~IL~~is~le~lqli--~~g~~~~~~~~~--~~~~~~~~~--------~~~s~~~~~~~~~~-~~~--- 528 (1281)
..|++-.++|+++.+..-.+-.|+.. ..|+...+.-.. .++.-..++ -.+++ -..+-|++ ..+
T Consensus 728 eaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPp-ehkferqgredkead 806 (1777)
T KOG1846|consen 728 EAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPP-EHKFERQGREDKEAD 806 (1777)
T ss_pred hhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCc-ccChhhcCccccccc
Confidence 99999999999999876544444432 122210000000 000000000 00000 00000000 000
Q ss_pred --CCcch------------hhhcCCccccCCCCCCCCCCCCHHHHHHHhhhhhhhhhhhhchhhHHHHhc-ccCCHHHHH
Q 000795 529 --NPSVM------------AVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHS-QRLNSEAIV 593 (1281)
Q Consensus 529 --~~~~~------------~~~~~~s~~ss~~~~~~~~~lt~~ei~~~~~~~~~~~~i~~~~id~iF~~S-~~L~~eAi~ 593 (1281)
.+... ...||||..| -.-.+. .-|..+..+||+|+.. ..|..-|+.
T Consensus 807 keeklsaaDlsiEgalGdapdfrggslmS------------ghSaak-------aictLiakaDRffedacdeLcLmALg 867 (1777)
T KOG1846|consen 807 KEEKLSAADLSIEGALGDAPDFRGGSLMS------------GHSAAK-------AICTLIAKADRFFEDACDELCLMALG 867 (1777)
T ss_pred ccccccHHhhhhccccCCCcccccccccc------------cchHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 00000 0112222111 111122 2244456799999975 899999999
Q ss_pred HHHHHHHHhchhhcCCC---------CCC--------c--cchHHHHHHHHh---hcccccccchhhhHHHHHHHHHHh-
Q 000795 594 AFVKALCKVSISELQSP---------TDP--------R--VFSLTKLVEIAH---YNMNRIRLVWSRMWNVLSDFFVSV- 650 (1281)
Q Consensus 594 ~fv~ALc~vS~eel~~~---------~~p--------r--~F~LqKLveVa~---~Nm~Rirl~W~~iW~vl~~hf~~v- 650 (1281)
+|.-|+.+.|...+..+ .-| | ...|.||++... ...-|+.++-+.+|..++.||+++
T Consensus 868 dfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeas 947 (1777)
T KOG1846|consen 868 DFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEAS 947 (1777)
T ss_pred HHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHH
Confidence 99999999998877532 112 2 367788887332 223489999999999999999999
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcc-hhhhhhhhhhhhhhhhHHHHhhc-CCchHHHHHHHHHHHHHHHhcccccccCcH
Q 000795 651 GLSENLSVAIFVMDSLRQLAMKFLE-REELANYNFQNEFLRPFVIIMQK-SGSAEIRELIIRCISQMVLSRVSNVKSGWK 728 (1281)
Q Consensus 651 ~~~~n~~va~~AiDsLrqLs~kfLe-~eEL~~f~FQ~~fLkPfe~Im~~-~~~~eIre~iL~cl~qmi~~~~~~IkSGWk 728 (1281)
+||...+|+..|+..+..+.++.|. ..|-++|+|.+.++.||+.+|+. +|+.|++++++..|.++|+.++++|.||||
T Consensus 948 aCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWk 1027 (1777)
T KOG1846|consen 948 ACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWK 1027 (1777)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 8999999999999899999988885 68889999999999999999985 689999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhh----HHH---------HHHHHHHHHH-HhhhcCcccccccchHHHHHHHHHHHHcCCC-------
Q 000795 729 SVFSIFTAAAADERK----NIV---------LLAFETMEKI-VREYFPHITETESTTFTDCVKCLLTFTNSRF------- 787 (1281)
Q Consensus 729 ~IF~iL~~aa~~~~~----~iV---------~~aF~~l~~I-~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~------- 787 (1281)
++|+.|.++...+.. .++ ..+|++++-. ..|..+.+ .++...||.|+.+|.++-.
T Consensus 1028 PLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipVf----anaalecimClmkflkgleevDckei 1103 (1777)
T KOG1846|consen 1028 PLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAALECIMCLMKFLKGLEEVDCKEI 1103 (1777)
T ss_pred hhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhH----HHHHHHHHHHHHHHHhcccccccchh
Confidence 999999998753322 222 2478877733 33444433 5889999999999986532
Q ss_pred ----------CccccHHHHHHHHHHHHHhhcCC---ccc----ccCCCCCC--CCCCCC-CCCCCc-------ccCCCCc
Q 000795 788 ----------NSDVCLNAIAFLRFCAVKLADGG---LVC----NEKGSVDG--SSSPPV-NDNAPD-------LQSFSDK 840 (1281)
Q Consensus 788 ----------~~niSL~AI~~L~~~~~~L~~~~---~~~----~~~~~~~~--~~~~~~-~~~~~~-------~~~~~~~ 840 (1281)
..+++|.|+++|.+|..-++..+ .+. ......+. ..+..+ .++++. ...+.+.
T Consensus 1104 gdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldqsamdeDgIEsphgpfpvledfddd 1183 (1777)
T KOG1846|consen 1104 GDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQSAMDEDGIESPHGPFPVLEDFDDD 1183 (1777)
T ss_pred cccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhhhhcccCCccCCCCCcccccccccc
Confidence 23578999999999988665431 100 00000000 000000 001100 1122333
Q ss_pred ccchhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCC-ChhhHHHHHHhcccccccccccccCCCCCCCCCCC
Q 000795 841 DDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLF-PRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSP 919 (1281)
Q Consensus 841 ~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f-~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~ 919 (1281)
.....+|+.+|..+.....++.+.-+..-+..+|++|..-.... ++.|--.+...+|+|.+..|..+.
T Consensus 1184 iagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl----------- 1252 (1777)
T KOG1846|consen 1184 IAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL----------- 1252 (1777)
T ss_pred chhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh-----------
Confidence 34678999999999998888889999999999999999776544 888888999999999999997643
Q ss_pred CCCCCCCcccccHHH--hHHHHHHHHHHHHHHhH-------------HHHHhhHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000795 920 TSHSPLSEGSTWDSE--TAAIGAECLVDIFICFF-------------DVVRSQLPGVVSILTGFIRSPIQGPASTGVAAL 984 (1281)
Q Consensus 920 ~~~s~~~e~~~W~~e--T~~~aL~~lv~lf~~yf-------------~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l 984 (1281)
+.+.+.|+.. -..+|+..-+.+...+. ..++.++.+.+.+...|...+.+.+.++|++|+
T Consensus 1253 -----dkdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsci 1327 (1777)
T KOG1846|consen 1253 -----DKDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCI 1327 (1777)
T ss_pred -----chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchh
Confidence 3466789643 35566666555544433 235568889999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhhhHHHhhhhcc----cc---------cCCCCCCccc-ccc---------
Q 000795 985 LHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMN----DI---------EIPNTSQSYA-DME--------- 1041 (1281)
Q Consensus 985 ~~Ll~~~g~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~----~~---------~~~~~~~~~~-~~~--------- 1041 (1281)
+.++...|++|++++|+..|.++.++|..|+.+..+++.+.- +. ..|..+.+.. +.|
T Consensus 1328 ryvlvtagpkFseemWniaccaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigdaapSsnPgaeaerqlIaAmaqls 1407 (1777)
T KOG1846|consen 1328 RYVLVTAGPKFSEEMWNIACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDAAPSSNPGAEAERQLIAAMAQLS 1407 (1777)
T ss_pred eeeeeccCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccccCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887765421 11 1122222111 111
Q ss_pred ------ccCCCCCCCC------------CCchhhhh---hhHHH--hhhhhhhHHHHHHHHHHHHHHH------------
Q 000795 1042 ------MDSDHGSIND------------NIDEDNLQ---TAAYV--VSRMKSHITLQLLSVQVAANLY------------ 1086 (1281)
Q Consensus 1042 ------~~~~~~~~~~------------~~~~~~~~---~~~~~--~~~~~~~cvlqLllIq~~~eL~------------ 1086 (1281)
..+..|.+.| ..+++|.+ +..|. ++...++|+|..++-..+-+=+
T Consensus 1408 fmkdkqcgpkkpeeeDhaqgcaLIielhgadkpnghtkhrlefheIisSLfsHclLLQliadiLLeEdskgPklgaekig 1487 (1777)
T KOG1846|consen 1408 FMKDKQCGPKKPEEEDHAQGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCLLLQLIADILLEEDSKGPKLGAEKIG 1487 (1777)
T ss_pred HHHhhccCCCCCcchhhhhcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Confidence 1111111111 01122322 22332 3455778864333322222211
Q ss_pred -------HHHhccCCHHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHHhhc
Q 000795 1087 -------KLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLT 1159 (1281)
Q Consensus 1087 -------~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~Lr~~L~k~g~~~~~~~PnLLkQE~~S~~~yl~iL~~m~~ 1159 (1281)
..+.++|+.+.+..+.++|++||+-|+||++.+.|...|-|...+-+ ..|||||-..|+.+|.+.|-....
T Consensus 1488 qtpeadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigg--aANLlkasalsfnilfhalscavL 1565 (1777)
T KOG1846|consen 1488 QTPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGG--AANLLKASALSFNILFHALSCAVL 1565 (1777)
T ss_pred cCCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12557899999999999999999999999999999999999877666 799999999999999988876555
Q ss_pred CCCCcchHHhHHHHHHHHHHHHHHHHHccc
Q 000795 1160 GNPSASEELNIESHLVEACEMILQMYLNCT 1189 (1281)
Q Consensus 1160 d~~~~~~~~~i~~~L~~lc~~il~~Y~~~~ 1189 (1281)
-+...-...++.+.|.+=-......-..|.
T Consensus 1566 lnqeeiTaeqvkkeLfeddakatdSrqqcs 1595 (1777)
T KOG1846|consen 1566 LNQEEITAEQVKKELFEDDAKATDSRQQCS 1595 (1777)
T ss_pred hhHHHHHHHHHhhhhchhhhhhhcchhhcc
Confidence 333222234444555554444444333333
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-29 Score=287.10 Aligned_cols=152 Identities=36% Similarity=0.656 Sum_probs=148.4
Q ss_pred HHHHHHhhhcCCCChhhHhhhcccCchhHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHHhh
Q 000795 155 EEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCK 234 (1281)
Q Consensus 155 ~~ia~fL~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~e~Fa~~y~~ 234 (1281)
..+|+=|+.-+|.-|..|..+||++++|..-|..+|+..|+|.||++|.|||.||+.|-|-||.|.-+|++-.|+.|||+
T Consensus 308 ~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~~ 387 (774)
T KOG0932|consen 308 ARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYFQ 387 (774)
T ss_pred HHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhc
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCccHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhhCcccc
Q 000795 235 CNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKM 306 (1281)
Q Consensus 235 ~Np~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~ 306 (1281)
|||++|.+.|.++.|..++++||||||.+||.+|||.+|||.|..|.|+|.|||.|+|..+|++|+++.+..
T Consensus 388 CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklew 459 (774)
T KOG0932|consen 388 CNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEW 459 (774)
T ss_pred cCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999997654
No 13
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.87 E-value=5.7e-23 Score=191.11 Aligned_cols=86 Identities=53% Similarity=0.921 Sum_probs=84.0
Q ss_pred HHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHHHH
Q 000795 671 MKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAF 750 (1281)
Q Consensus 671 ~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF 750 (1281)
||||+++||++|+||++||+||+.||.++++.+||++||+||.+||+++|++|+|||++||++|+.|+.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000795 751 ETMEKI 756 (1281)
Q Consensus 751 ~~l~~I 756 (1281)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 14
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.50 E-value=0.016 Score=80.23 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCchHHHHHHHHHHHHHHHhccccccc-CcHHHHH
Q 000795 699 SGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFS 732 (1281)
Q Consensus 699 ~~~~eIre~iL~cl~qmi~~~~~~IkS-GWk~IF~ 732 (1281)
.+..|||...|+++.+++.++|+.+.. .|..||.
T Consensus 1358 D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~ 1392 (1780)
T PLN03076 1358 DPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFE 1392 (1780)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 578999999999999999999999987 8999888
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=2.9 Score=51.97 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=63.0
Q ss_pred cCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHH
Q 000795 698 KSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVK 777 (1281)
Q Consensus 698 ~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~ 777 (1281)
+++++.||-..+.||.|+|-.+.+.+--.=.+-++.+-+-|.|+++++=+.-...+-.+..-..+.+.+ .....|+
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p----hl~~Ive 259 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP----HLDNIVE 259 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc----chHHHHH
Confidence 566899999999999999987776665555666666666678888876665555555444433333321 2222222
Q ss_pred HHHHHHcCCCCccccHHHHHHHH
Q 000795 778 CLLTFTNSRFNSDVCLNAIAFLR 800 (1281)
Q Consensus 778 cL~~F~~~~~~~niSL~AI~~L~ 800 (1281)
-.. ...|..|.+++++|-++.-
T Consensus 260 yML-~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 260 YML-QRTQDVDENVALEACEFWL 281 (885)
T ss_pred HHH-HHccCcchhHHHHHHHHHH
Confidence 111 1367778889999987644
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=17 Score=48.39 Aligned_cols=139 Identities=18% Similarity=0.258 Sum_probs=99.8
Q ss_pred hhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCC
Q 000795 846 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPL 925 (1281)
Q Consensus 846 lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~ 925 (1281)
-|=-||.-|-..++++.+..|..|+-+|+.+....|..+.+.. ..+.|+|..-...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~------~~l~~lf~q~~~d------------------ 170 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL------DDLLRLFSQTMTD------------------ 170 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH------HHHHHHHHHhccC------------------
Confidence 5888999999999999999999999999999999999998732 1345566543221
Q ss_pred CcccccHHHhHHHHHHHHHHHH---HHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000795 926 SEGSTWDSETAAIGAECLVDIF---ICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1002 (1281)
Q Consensus 926 ~e~~~W~~eT~~~aL~~lv~lf---~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g~~f~~~~W~~ 1002 (1281)
.... ..-+..+|+..++..- +.-.+.+..+++.++..+..+|+-+++.-|...-.+|-.|+...++-+ ..+-..
T Consensus 171 ~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l-~~~l~~ 247 (1075)
T KOG2171|consen 171 PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL-RPHLSQ 247 (1075)
T ss_pred Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-HHHHHH
Confidence 1111 3456666666555444 223445667899999999999999999999989999988887655544 555555
Q ss_pred HHHHHHHHH
Q 000795 1003 ILLALKETT 1011 (1281)
Q Consensus 1003 i~~~~~~l~ 1011 (1281)
|++.--.++
T Consensus 248 ii~~~l~Ia 256 (1075)
T KOG2171|consen 248 IIQFSLEIA 256 (1075)
T ss_pred HHHHHHHHh
Confidence 555444333
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.48 E-value=46 Score=41.60 Aligned_cols=163 Identities=11% Similarity=0.110 Sum_probs=103.5
Q ss_pred hhhHHHHhcccCCHHHHHHHHHHHHHhchh--hcCC-------CCCCccchHHHHHHHHhhcccccccchhhhHHHHHHH
Q 000795 576 ELNHVFAHSQRLNSEAIVAFVKALCKVSIS--ELQS-------PTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDF 646 (1281)
Q Consensus 576 ~id~iF~~S~~L~~eAi~~fv~ALc~vS~e--el~~-------~~~pr~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~~h 646 (1281)
++.+++++.. .+.+.-.+-++-|+..... ++.. --...-+.+.||+-++...+. -..+...-.+.+.
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~ 83 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYL---HEDPELLILIINS 83 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHT---TTSHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hcchhHHHHHHHH
Confidence 4667776665 4444444444444433211 1110 012346778888777654433 2234456667777
Q ss_pred HHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccC
Q 000795 647 FVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSG 726 (1281)
Q Consensus 647 f~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSG 726 (1281)
+.+=-.|+|..++..|+..|-.++ ..|+. ..++.+...++. ++++-||...+-|+.++.....+.+..+
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~-----~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~ 152 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIR-----TPEMA-----EPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDE 152 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH------SHHHH-----HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhc-----ccchh-----hHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHH
Confidence 777777899988888876666544 23332 234445555544 5677999999999999999988877666
Q ss_pred cHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000795 727 WKSVFSIFTAAAADERKNIVLLAFETMEKI 756 (1281)
Q Consensus 727 Wk~IF~iL~~aa~~~~~~iV~~aF~~l~~I 756 (1281)
++..+.....|+++.++..|...+..|
T Consensus 153 ---~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 ---LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 466666666788888888888888877
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=86.56 E-value=96 Score=38.72 Aligned_cols=293 Identities=16% Similarity=0.209 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccc--cch-hhhHHHHHHHHHHhcCCccHhHHHHHHHHH
Q 000795 590 EAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIR--LVW-SRMWNVLSDFFVSVGLSENLSVAIFVMDSL 666 (1281)
Q Consensus 590 eAi~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rir--l~W-~~iW~vl~~hf~~v~~~~n~~va~~AiDsL 666 (1281)
..+..+++.|+++- ..|.-|...+++.+... ..+.. ... ..+=+.+.+.+. +.+..|.+.|+..+
T Consensus 188 ~~~~~~~~~L~~~l-------~~~~~~~q~~il~~l~~-~~~~~~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 188 SLIPKLIRILCQLL-------SDPDPWLQIKILRLLRR-YAPMEPEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHHHHHHHHHH-------TCCSHHHHHHHHHHHTT-STSSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcc-------cccchHHHHHHHHHHHh-cccCChhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHH
Confidence 44666777777653 13444555566555431 11111 000 122233333333 56677887777655
Q ss_pred HHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHH
Q 000795 667 RQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIV 746 (1281)
Q Consensus 667 rqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV 746 (1281)
-.+ .+..+ .-..+..|+..++. +.+..+|-.+++++.++...+...+. ....++..+. .+.++.+.
T Consensus 256 ~~l----~~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir 321 (526)
T PF01602_consen 256 IKL----SPSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIR 321 (526)
T ss_dssp HHH----SSSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHH
T ss_pred HHh----hcchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHH
Confidence 432 22222 22345667777666 77889999999999999988755566 4443333332 35667888
Q ss_pred HHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCC
Q 000795 747 LLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPP 826 (1281)
Q Consensus 747 ~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~ 826 (1281)
..+.+++..++++ .++...++.|.+|+....+.++.-.++..+..|+.....
T Consensus 322 ~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~------------------ 373 (526)
T PF01602_consen 322 KKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP------------------ 373 (526)
T ss_dssp HHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS------------------
T ss_pred HHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc------------------
Confidence 8999988877653 577888999999985443455666666666555554310
Q ss_pred CCCCCCcccCCCCcccchhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhccccccccccc
Q 000795 827 VNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCD 906 (1281)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~ 906 (1281)
..-| .+..+.++.......|+..++..+.+++..+...- ..+.. -+++.+..
T Consensus 374 -----------------~~~~--~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~~~l~----~L~~~l~~ 425 (526)
T PF01602_consen 374 -----------------DAEW--YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----EKILK----KLIELLED 425 (526)
T ss_dssp -----------------SHHH--HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----HHHHH----HHHHHHTS
T ss_pred -----------------hHHH--HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----HHHHH----HHHHHHHH
Confidence 0112 22344444444556677778888888777653321 11222 22222211
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHHHh--hHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000795 907 KKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS--QLPGVVSILTGFIRSPIQGPASTGVAAL 984 (1281)
Q Consensus 907 ~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~~--~l~~~L~lL~~ci~q~~~~la~ig~~~l 984 (1281)
.. + .+ +++.++-++..|-+.... ....++..+..-...+++.+-.....++
T Consensus 426 -~~---------------~-------~~----~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~ 478 (526)
T PF01602_consen 426 -IS---------------S-------PE----ALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTAL 478 (526)
T ss_dssp -SS---------------S-------HH----HHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred -hh---------------H-------HH----HHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 00 0 11 344555555555554443 4566666666666666666666666666
Q ss_pred HHHHHhh
Q 000795 985 LHLAGEL 991 (1281)
Q Consensus 985 ~~Ll~~~ 991 (1281)
-.+....
T Consensus 479 ~Kl~~~~ 485 (526)
T PF01602_consen 479 AKLFKRN 485 (526)
T ss_dssp HHHHHHS
T ss_pred HHHHhhC
Confidence 5555543
No 19
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.79 E-value=2.7 Score=57.23 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcC
Q 000795 844 SSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG 881 (1281)
Q Consensus 844 ~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G 881 (1281)
...|-.++..+.....|....+=..+.++.-.++..|-
T Consensus 1066 kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f 1103 (1514)
T KOG0929|consen 1066 KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELF 1103 (1514)
T ss_pred hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhh
Confidence 45688888888888888888888888888877777554
No 20
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.03 E-value=41 Score=38.45 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHHHhccccccc-CcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHH
Q 000795 701 SAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCL 779 (1281)
Q Consensus 701 ~~eIre~iL~cl~qmi~~~~~~IkS-GWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL 779 (1281)
....|..+.+-+..+++.+...+++ |=.-|.+++..+-.+++|.-+..+|+.+..|+..|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 4567999999999999998877754 667888999999999999999999999999888763 22 3344444444
Q ss_pred HHHH----cC-CCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHHHH
Q 000795 780 LTFT----NS-RFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGL 854 (1281)
Q Consensus 780 ~~F~----~~-~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L 854 (1281)
..|= +. +.|+ ...++-++-..+-..+ ...+.+..+=+|+|..
T Consensus 169 ~cYFPI~F~pp~~dp-~~IT~edLk~~L~~cl-------------------------------~s~~~fa~~~~p~Lle- 215 (262)
T PF14500_consen 169 SCYFPITFRPPPNDP-YGITREDLKRALRNCL-------------------------------SSTPLFAPFAFPLLLE- 215 (262)
T ss_pred hheeeeeeeCCCCCC-CCCCHHHHHHHHHHHh-------------------------------cCcHhhHHHHHHHHHH-
Confidence 4331 11 1111 1111111111111111 1112233445564432
Q ss_pred hhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcc
Q 000795 855 SKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVI 897 (1281)
Q Consensus 855 ~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VL 897 (1281)
++..+ -+.|+.-+++||-.++..||..==.+.|..+++.+=
T Consensus 216 -KL~s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 216 -KLDST-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred -HHcCC-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 23222 355999999999999999996544557777776543
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=76.64 E-value=2.7e+02 Score=37.08 Aligned_cols=270 Identities=14% Similarity=0.152 Sum_probs=145.8
Q ss_pred CCchHHHHHHHHHHHHHHHhccccccc-CcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHH
Q 000795 699 SGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVK 777 (1281)
Q Consensus 699 ~~~~eIre~iL~cl~qmi~~~~~~IkS-GWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~ 777 (1281)
+++.|+|-|...-+..=++.-.-++.- +-+-+..++--.-.|.++++-..|..|+--+++. ++ .+.....|+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK----vk---e~~le~~ve 88 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK----VK---EDQLETIVE 88 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh----ch---HHHHHHHHH
Confidence 556788888888887777766555543 5555666666666778888999999999977743 55 466777777
Q ss_pred HHHHHHcCCCCccccHHHHHHHHHHHHHhhcC--Cc----ccccC-CCC-C-CCCCCCCCC-CCCcccCCC-----Cccc
Q 000795 778 CLLTFTNSRFNSDVCLNAIAFLRFCAVKLADG--GL----VCNEK-GSV-D-GSSSPPVND-NAPDLQSFS-----DKDD 842 (1281)
Q Consensus 778 cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~--~~----~~~~~-~~~-~-~~~~~~~~~-~~~~~~~~~-----~~~~ 842 (1281)
.|..-.-...++.--++||++.-.++. ++-. .+ +|..- ... . -+.+.++.. ...-...+. -.+-
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~n-l~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~l 167 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIAN-LPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTL 167 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhc-CCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhccc
Confidence 776653223334444566665432222 2100 00 00000 000 0 000000000 000000000 0000
Q ss_pred chhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCC
Q 000795 843 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSH 922 (1281)
Q Consensus 843 ~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~ 922 (1281)
...+-..+|.++-....-+|..||++|+..|=.... +|. ......+..++ ++.+....
T Consensus 168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~-~~~---~~ly~~li~~L----l~~L~~~~-------------- 225 (1233)
T KOG1824|consen 168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLAS-SCN---RDLYVELIEHL----LKGLSNRT-------------- 225 (1233)
T ss_pred CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH-hcC---HHHHHHHHHHH----HhccCCCC--------------
Confidence 112445677777777888999999999988766554 333 22344444433 33332211
Q ss_pred CCCCcccccHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhh---ccCCcchhHHHHHHHHHHHHhhCCCCCHHH
Q 000795 923 SPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFI---RSPIQGPASTGVAALLHLAGELGSRLSQDE 999 (1281)
Q Consensus 923 s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci---~q~~~~la~ig~~~l~~Ll~~~g~~f~~~~ 999 (1281)
. ..- -.|.++++..++.--.+-|. ..++.+.-++..+. ..+.+++..-....|.-++.-+-... -.+
T Consensus 226 ----q-~~~-~rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei-~p~ 295 (1233)
T KOG1824|consen 226 ----Q-MSA-TRTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI-LPH 295 (1233)
T ss_pred ----c-hHH-HHHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh-ccc
Confidence 1 111 26788888887765444433 22333333333333 77889999999999988888755444 345
Q ss_pred HHHHHHHHH
Q 000795 1000 WREILLALK 1008 (1281)
Q Consensus 1000 W~~i~~~~~ 1008 (1281)
|..+++..-
T Consensus 296 ~pei~~l~l 304 (1233)
T KOG1824|consen 296 VPEIINLCL 304 (1233)
T ss_pred chHHHHHHH
Confidence 666655433
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.36 E-value=1e+02 Score=39.77 Aligned_cols=257 Identities=14% Similarity=0.223 Sum_probs=147.7
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcC-CchHHHHHHHHHHHHHHHhccccccc----
Q 000795 651 GLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKS-GSAEIRELIIRCISQMVLSRVSNVKS---- 725 (1281)
Q Consensus 651 ~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~-~~~eIre~iL~cl~qmi~~~~~~IkS---- 725 (1281)
.-+++..++..|-+.|.+++.. .++ .|+.-+..++.+. +..++|-..==.|++-+.++....+.
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~-----nf~------~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQ-----NFP------QFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhc-----cHH------HHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 4467777888887777776521 111 2444454444443 33444433333344444444443322
Q ss_pred CcHH--------HHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCc---cccHH
Q 000795 726 GWKS--------VFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS---DVCLN 794 (1281)
Q Consensus 726 GWk~--------IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~---niSL~ 794 (1281)
-|-. |=+.+..+-....|..-..|=+++-.|..=- || .+...++|..|..-+.+.... .-+|.
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~sle 152 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLE 152 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHH
Confidence 2321 1111112222233444556667777765432 55 688999999999887554333 24677
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHHHHhhhccCChHHHHHHHHHHHH
Q 000795 795 AIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLF 874 (1281)
Q Consensus 795 AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF 874 (1281)
||+|+ |-+ +... . -.+.....-+-+..|..+ ..+...||-.|+..|.
T Consensus 153 alGyi--ce~-i~pe---------------v-------------l~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~ 199 (859)
T KOG1241|consen 153 ALGYI--CED-IDPE---------------V-------------LEQQSNDILTAIVQGMRK--EETSAAVRLAALNALY 199 (859)
T ss_pred HHHHH--Hcc-CCHH---------------H-------------HHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHH
Confidence 77765 211 1000 0 000012222333333222 3456789999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHH
Q 000795 875 NILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVV 954 (1281)
Q Consensus 875 ~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l 954 (1281)
+.|.--+..|..+.=..++ +..+...++. +| .+-+.-|++.++++..-||+.+
T Consensus 200 nsLef~~~nF~~E~ern~i-------MqvvcEatq~---------------~d-----~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 200 NSLEFTKANFNNEMERNYI-------MQVVCEATQS---------------PD-----EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHHHHhhccHhhhcee-------eeeeeecccC---------------Cc-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888788765433332 2333332211 11 3667789999999999999998
Q ss_pred Hh-hHHHHHHHHHHhhccCCcchhHHHHHHH
Q 000795 955 RS-QLPGVVSILTGFIRSPIQGPASTGVAAL 984 (1281)
Q Consensus 955 ~~-~l~~~L~lL~~ci~q~~~~la~ig~~~l 984 (1281)
.+ |.+.++.+-..-++++|+++|--|++--
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFW 283 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFW 283 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 86 5666999999999999999998887543
No 23
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=75.21 E-value=30 Score=36.57 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhchhhcCCC---------CCCccchHHHHHHHHhhcccccc------cchhhhHHHHHHHHHHhcCCccH
Q 000795 592 IVAFVKALCKVSISELQSP---------TDPRVFSLTKLVEIAHYNMNRIR------LVWSRMWNVLSDFFVSVGLSENL 656 (1281)
Q Consensus 592 i~~fv~ALc~vS~eel~~~---------~~pr~F~LqKLveVa~~Nm~Rir------l~W~~iW~vl~~hf~~v~~~~n~ 656 (1281)
.....+.||.++..+.... ..+|.|+|+-|-.+-..+...+. ..-.-+.+.+..++.+.+.+++.
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~ 87 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF 87 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4456788999984433221 24578999988888777766665 22355678888899998888776
Q ss_pred hHHHHHHHHHHHHHHHhcc--hhhhhhhhhhhhhhhhHHH-HhhcC-CchHHHHHHHHHHHHHHH
Q 000795 657 SVAIFVMDSLRQLAMKFLE--REELANYNFQNEFLRPFVI-IMQKS-GSAEIRELIIRCISQMVL 717 (1281)
Q Consensus 657 ~va~~AiDsLrqLs~kfLe--~eEL~~f~FQ~~fLkPfe~-Im~~~-~~~eIre~iL~cl~qmi~ 717 (1281)
.+-..++..+..+..+|-+ +.|+ +.|+.-... ++... +...-|+.+|+++..+..
T Consensus 88 ~i~~~slri~~~l~~~~~~~Lk~el------e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 88 PIFSRSLRIFLTLLSRFRSHLKLEL------EVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6666666666666655543 2232 223332222 33332 246788999999888763
No 24
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=74.13 E-value=41 Score=41.79 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=72.6
Q ss_pred cccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhhHHHHHHHH--HHhcCCccHhHHHH
Q 000795 584 SQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFF--VSVGLSENLSVAIF 661 (1281)
Q Consensus 584 S~~L~~eAi~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~~hf--~~v~~~~n~~va~~ 661 (1281)
-..++.+++..+|..||..-.-. .+.+-.==+..|+=|-... ...=..|.+.+ ..-.-.++..+..=
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~----------~l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRG 275 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV----------SLCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRG 275 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc----------ccchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhh
Confidence 47889999999999999772111 1111111112222111110 11111222222 11111234455557
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhhh-hhhhhHHHHhhcCCchHHHHHHHHHHHHHH-Hhccccc-ccCcHHHHHHHHHhh
Q 000795 662 VMDSLRQLAMKFLEREELANYNFQN-EFLRPFVIIMQKSGSAEIRELIIRCISQMV-LSRVSNV-KSGWKSVFSIFTAAA 738 (1281)
Q Consensus 662 AiDsLrqLs~kfLe~eEL~~f~FQ~-~fLkPfe~Im~~~~~~eIre~iL~cl~qmi-~~~~~~I-kSGWk~IF~iL~~aa 738 (1281)
||..|+.+..+.-+ +..+.-.|-- -+|..|...+..... -|---|+.++..++ ...+..+ ...|..++.++..+.
T Consensus 276 Av~~l~~ll~~~~~-~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~ 353 (464)
T PF11864_consen 276 AVFFLRMLLWGSGE-QGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIF 353 (464)
T ss_pred HHHHHHHHHhcccc-CCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHH
Confidence 77777776644411 2222222221 356667777764432 23334677777888 6666664 459999999998753
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.36 E-value=39 Score=36.11 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=70.2
Q ss_pred cHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHH
Q 000795 655 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIF 734 (1281)
Q Consensus 655 n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL 734 (1281)
|+.|+.-|+-+|.+|+.+|-..=| .+ -|...-.-++.++.||...+.|+.+++....-.++. ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~--~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG--QLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh--hhhHHHH
Confidence 356788888889999988754222 01 122222335678999999999999999764333331 1123455
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHH
Q 000795 735 TAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLT 781 (1281)
Q Consensus 735 ~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~ 781 (1281)
. +-.|+++.|...|=..+..+....-+... ...|.+||..|..
T Consensus 70 ~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 70 K-LLVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISSLNN 112 (178)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhC
Confidence 4 44788999999998888877766433332 3455555544433
No 26
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=70.64 E-value=17 Score=38.04 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=84.4
Q ss_pred hhccCChHHHHHHHHHHHHHHHHhcC--CCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHH
Q 000795 856 KLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDS 933 (1281)
Q Consensus 856 ~l~~d~r~eVR~~Al~tLF~iL~~~G--~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~ 933 (1281)
......+.-=|+.|++-|-+++.... ..++...|..+|. .||-.+..=+.......... .+...-...-+
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~------~s~~~~~~~RL- 82 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSS------ASTATTAESRL- 82 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcc------cchHHHHHHHH-
Confidence 33455678889999999999998665 8899999999998 45666665443221100000 00000011234
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhccCC-cchhHHHHHHHHHH---HHh--hCCCCCHHHHH
Q 000795 934 ETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPI-QGPASTGVAALLHL---AGE--LGSRLSQDEWR 1001 (1281)
Q Consensus 934 eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~-~~la~ig~~~l~~L---l~~--~g~~f~~~~W~ 1001 (1281)
+.|.-+++.++......+.... ...+++.+..++..++ +-+.-+|..+.+.| +.. ....++...|.
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~kt--~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W~ 154 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRKT--VKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQWE 154 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhcC
Confidence 6788888888887777655433 4567777777777777 55666666665544 222 44456666663
No 27
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.37 E-value=4.6e+02 Score=36.54 Aligned_cols=251 Identities=16% Similarity=0.199 Sum_probs=135.1
Q ss_pred CccchHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcch----------hhhhhh
Q 000795 613 PRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLER----------EELANY 682 (1281)
Q Consensus 613 pr~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~----------eEL~~f 682 (1281)
-|+=+|+-++.|...--.-..-.|..|.+.|...+ ..+......++..+-++||-++.-||.. +-+..|
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~-d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~f 936 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSAT-DFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVF 936 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHh-hccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHH
Confidence 46777887887776665555556888888877332 2232234567788889999888888852 344445
Q ss_pred hhhhhhhh-hHH------------HH-hhcCCchHHHHHHHHHHHHHHHhccccc--ccCcHHHHHHHHHhhcchhhHHH
Q 000795 683 NFQNEFLR-PFV------------II-MQKSGSAEIRELIIRCISQMVLSRVSNV--KSGWKSVFSIFTAAAADERKNIV 746 (1281)
Q Consensus 683 ~FQ~~fLk-Pfe------------~I-m~~~~~~eIre~iL~cl~qmi~~~~~~I--kSGWk~IF~iL~~aa~~~~~~iV 746 (1281)
.=|+.=+. +|- .- |..+.+..-..+.++-+.. ....+-+ --=|-.+|.-|.-.+.|..+++=
T Consensus 937 s~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVR 1014 (1610)
T KOG1848|consen 937 SRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRAEVR 1014 (1610)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchHHHh
Confidence 44532110 010 00 1111111111111111111 0000001 11478888888888888888888
Q ss_pred HHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccc-cCCCC-----C
Q 000795 747 LLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCN-EKGSV-----D 820 (1281)
Q Consensus 747 ~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~-~~~~~-----~ 820 (1281)
+-|-+++=.|++-|-+.++ .++..+|+ |.+...|.++.-... +.+.. +
T Consensus 1015 ngAvqtlfri~~Shg~~l~---~~aW~s~~-----------------------w~vi~pLLd~~~~q~~~ewngkeiqkq 1068 (1610)
T KOG1848|consen 1015 NGAVQTLFRIFNSHGSKLG---TNAWASCC-----------------------WLVIMPLLDSQPIQNVSEWNGKEIQKQ 1068 (1610)
T ss_pred hhHHHHHHHHHhhhcccCC---hhHHHHHH-----------------------HHHHHHHhccccccchhhhcchhHhhh
Confidence 8899999999998887776 44555443 223223322210000 00000 0
Q ss_pred CCCCCC-CCCCCCc-----ccCCCCcccchhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcC--CCCChhhHHHH
Q 000795 821 GSSSPP-VNDNAPD-----LQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWMGV 892 (1281)
Q Consensus 821 ~~~~~~-~~~~~~~-----~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G--~~f~~~~W~~i 892 (1281)
+....- .-.+..+ -..+....+....|=-+|.=+-++..|.-+|+..+||..+...+..+. +.++..+=..|
T Consensus 1069 wtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~ 1148 (1610)
T KOG1848|consen 1069 WTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKI 1148 (1610)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHh
Confidence 000000 0000000 000112234677899999999999999999999999999999998774 45555444443
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=69.11 E-value=1.8e+02 Score=31.88 Aligned_cols=177 Identities=17% Similarity=0.131 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHhhcccccccchhhhHHHHH---HHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhh
Q 000795 614 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLS---DFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLR 690 (1281)
Q Consensus 614 r~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~---~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLk 690 (1281)
|.=.|++|-.++..| ........+++.+. .-+.......+..|+..|+..+..++...-.. +..+ -..++.
T Consensus 24 r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~--~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEPY--ADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHH--HHHHHH
Confidence 444677777777776 11222344555555 34444444445568888988888888543321 2111 123443
Q ss_pred hHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhc---Cccccc
Q 000795 691 PFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF---PHITET 767 (1281)
Q Consensus 691 Pfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l---~~l~~~ 767 (1281)
++.... .....-|++...+|+..|++..+ .+=+.++.++..+..++++.+-..+.+.+..++..+- ..+.
T Consensus 98 ~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~-- 170 (228)
T PF12348_consen 98 PLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ-- 170 (228)
T ss_dssp HHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG---
T ss_pred HHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc--
Confidence 333322 23456799999999999998654 1226669999999999998888888888888877654 2222
Q ss_pred ccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHH
Q 000795 768 ESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAV 804 (1281)
Q Consensus 768 ~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~ 804 (1281)
....+..++.++..+.... ++++=-.|-..||....
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHH
Confidence 1223578888888887543 34454455555554433
No 29
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=66.21 E-value=1.5e+02 Score=35.02 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred HHHHHHhhhccCChHHHHHHHHHHHHHHH-HhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCc
Q 000795 849 PLLTGLSKLTSDSRSTIRKSSLEVLFNIL-KDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSE 927 (1281)
Q Consensus 849 pLL~~L~~l~~d~r~eVR~~Al~tLF~iL-~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e 927 (1281)
||+...-.--.+..|+.|..-+-.++.++ ...|..+.+ .-..|++.|.-|.++-+....
T Consensus 71 ~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~------------------- 130 (319)
T PF08767_consen 71 PLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDF------------------- 130 (319)
T ss_dssp HHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTS-------------------
T ss_pred HHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhh-------------------
Confidence 45543333223355667766555555544 466665553 446777777777777664311
Q ss_pred ccccHHHhHHHHHHHHHHHHHHhHHHHHh----hHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCC
Q 000795 928 GSTWDSETAAIGAECLVDIFICFFDVVRS----QLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 993 (1281)
Q Consensus 928 ~~~W~~eT~~~aL~~lv~lf~~yf~~l~~----~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g~ 993 (1281)
... .+-+..=.+.+-.+-.++|+.+.. .+..+++-+.|.++.++.+++..|...+..++.....
T Consensus 131 -~~y-Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 -EEY-PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp -SSS-HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhC-hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 111 255555555566666666776653 4788999999999999999999999999999988444
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=63.85 E-value=2.1e+02 Score=37.76 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=36.4
Q ss_pred hhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHh
Q 000795 846 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSH 895 (1281)
Q Consensus 846 lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~ 895 (1281)
+.=++...+.+++.|+.+-||+.|+-.+.++...+...+...-|...+..
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~ 186 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE 186 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence 34467777777778888888888888888888877666655556655544
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=62.87 E-value=2.9e+02 Score=34.76 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 000795 645 DFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLS 718 (1281)
Q Consensus 645 ~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~ 718 (1281)
.++..+-.+++..|+..|+..|+.++..-...+. -|....+.-+..+|.+ ++..+|-.+++++.++-..
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~----l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ----LFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH----HhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhc
Confidence 3445555688999999999999998743222222 2333345555666644 3557888888888777543
No 32
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=62.53 E-value=13 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHH
Q 000795 851 LTGLSKLTSDSRSTIRKSSLEVLFNILK 878 (1281)
Q Consensus 851 L~~L~~l~~d~r~eVR~~Al~tLF~iL~ 878 (1281)
+-.+.+++.|+.++||..|+..|=++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445567789999999999999987764
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=62.36 E-value=29 Score=33.27 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhccccccc
Q 000795 646 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 725 (1281)
Q Consensus 646 hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkS 725 (1281)
++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..++...+.++.++..........
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444445666778888888887766321 3333333455788888887765 47899999999999997654321111
Q ss_pred CcHH-HHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000795 726 GWKS-VFSIFTAAAADERKNIVLLAFETMEKI 756 (1281)
Q Consensus 726 GWk~-IF~iL~~aa~~~~~~iV~~aF~~l~~I 756 (1281)
=++. +...|-....+.+..+.+.+..++..+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1111 233333333333445555555555443
No 34
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=58.09 E-value=4.4e+02 Score=32.51 Aligned_cols=159 Identities=15% Similarity=0.200 Sum_probs=99.7
Q ss_pred hhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCc
Q 000795 684 FQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPH 763 (1281)
Q Consensus 684 FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~ 763 (1281)
|-+-++.-| .++..+.+.-+|.+.|+.|.+|+.+....+...=.....-+--|+.+.++.+++.|=+....+...|.+.
T Consensus 327 f~~iL~~l~-EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 327 FAEILLLLL-EVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHH-HHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 444444434 4566777788999999999999999998887655554444445666788889999998887777776542
Q ss_pred ccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccc
Q 000795 764 ITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDN 843 (1281)
Q Consensus 764 l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1281)
.+.....-|+.. .|..+.+-+|..+..+...+... + .
T Consensus 406 ------~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e~l~~E-----------------------e---------L 442 (516)
T KOG2956|consen 406 ------QCIVNISPLILT-----ADEPRAVAVIKMLTKLFERLSAE-----------------------E---------L 442 (516)
T ss_pred ------hHHHHHhhHHhc-----CcchHHHHHHHHHHHHHhhcCHH-----------------------H---------H
Confidence 233333333333 34457777776665443332110 0 0
Q ss_pred hhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcC-CCCCh
Q 000795 844 SSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HLFPR 886 (1281)
Q Consensus 844 ~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G-~~f~~ 886 (1281)
..+-=-+.=++...+......||+.|+=.|-.+...-| ..+.|
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 00001122233344556678899999999988888888 65555
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.91 E-value=6.6e+02 Score=34.46 Aligned_cols=416 Identities=14% Similarity=0.160 Sum_probs=220.1
Q ss_pred cCCchHHHHHHHHHHHHHHHhccccc---ccCcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccc-cchHH
Q 000795 698 KSGSAEIRELIIRCISQMVLSRVSNV---KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETE-STTFT 773 (1281)
Q Consensus 698 ~~~~~eIre~iL~cl~qmi~~~~~~I---kSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~-~~~f~ 773 (1281)
.+++..|...++.||..++.+++..- .+--..+|+++..++. ..|.+=..|-+.+..|..+-- .-|..+ +....
T Consensus 105 ~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~-~~~~~~HpA~~~ 182 (1176)
T KOG1248|consen 105 ESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPP-FAPDAEHPASLS 182 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCC-CCccccchHHHH
Confidence 34567788999999999999865331 1122445677777664 466677778888888876421 011000 12222
Q ss_pred HHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhh-HHHHH
Q 000795 774 DCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFW-VPLLT 852 (1281)
Q Consensus 774 d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW-~pLL~ 852 (1281)
-.=.||..+..-- ..+..-+-+..|..+-+-+. . | .++..
T Consensus 183 vak~cl~~~e~~~-~~a~~t~v~~~L~Ll~~~~~-------------------------------------~-~p~~li~ 223 (1176)
T KOG1248|consen 183 VAKFCLALIESKL-GSAENTTVLRSLMLLRDVLS-------------------------------------T-FPRPLIK 223 (1176)
T ss_pred HHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhc-------------------------------------c-CCHHHHH
Confidence 2223333332111 01122222222222222110 0 1 24444
Q ss_pred HHhh----hccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcc
Q 000795 853 GLSK----LTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEG 928 (1281)
Q Consensus 853 ~L~~----l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~ 928 (1281)
.+.+ +++-..-.|+..++|+|-..+..|...++.++-..++. + +++ +.. .. . ...-.
T Consensus 224 sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~-a---l~~-l~p--s~--~----------D~~~t 284 (1176)
T KOG1248|consen 224 SLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLT-A---LMT-LSP--SE--N----------DDLLT 284 (1176)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH-H---HHH-hCC--Cc--c----------chHHH
Confidence 4444 55667889999999999999999988887766555443 1 111 111 00 0 01123
Q ss_pred cccHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHH-H
Q 000795 929 STWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLA-L 1007 (1281)
Q Consensus 929 ~~W~~eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g~~f~~~~W~~i~~~-~ 1007 (1281)
..|+ .-++-|...+ -+..-+.--..+++++.++..|...+++++...+..|+..++..... ..+. +|.. +
T Consensus 285 ~~W~-~v~~~~~~~l---a~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~----~c~~~~ 355 (1176)
T KOG1248|consen 285 VAWL-KVLNEAHDIL---ATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDA----LCSKQL 355 (1176)
T ss_pred HHHH-HHHHHHHHHH---HHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHH----HHHHHH
Confidence 4676 3333332222 22233334456899999999999999999999999999999887655 1111 1211 1
Q ss_pred HHHHhhhhhhHHHhhhhcccccCCCCCCccccccccCCCCCCCCCCchhhhhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 000795 1008 KETTASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYK 1087 (1281)
Q Consensus 1008 ~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cvlqLllIq~~~eL~~ 1087 (1281)
+.+.+.- |... ==..+|.+.-+|+
T Consensus 356 ~~~l~~k---f~~~-----------------------------------------------------~~~ilqi~s~~fe 379 (1176)
T KOG1248|consen 356 HSLLDYK---FHAV-----------------------------------------------------WRFILQILSALFE 379 (1176)
T ss_pred HHHHcch---HHHH-----------------------------------------------------HHHHHHHHHHHHH
Confidence 1110000 0000 1122444555566
Q ss_pred HHhccCCHHHHHHHHHHHH---HhhhhhhhhcCCHHHHHHHHHhhcccCCC--------CCCchhhhhHHH-HHHHHHHH
Q 000795 1088 LHLRLLSTTNVKILLDIFS---SIASHAHELNSELVLQKKLQRVCLVLELS--------DPPMVHFENESY-QTYLNFLR 1155 (1281)
Q Consensus 1088 ~~~~~l~~~~l~~ll~~L~---~s~~fA~~fN~~~~Lr~~L~k~g~~~~~~--------~PnLLkQE~~S~-~~yl~iL~ 1155 (1281)
.... .+..++.+-|..|. .+..++++. .|...+=-+ +..|. +-|| .-|+.+. -.+|--++
T Consensus 380 k~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~----~ld~~IGSA--V~AmGPe~vL~~lpLnl-~~~s~~~~RsWLLPvL 451 (1176)
T KOG1248|consen 380 KCGE-LSGPELTKTLEGLCDLRASPDFFHKL----QLDQCIGSA--VRAMGPERVLTILPLNL-HAESLSFTRSWLLPVL 451 (1176)
T ss_pred Hhhh-hcCHHHHHHHHHHHHhhcCCCCccHH----HHHHHHHHH--HHhhCHHHHHHHcchhc-cccccccchhHhHHHH
Confidence 5544 44444444444333 244333332 443333222 11111 1233 1122211 12345555
Q ss_pred HhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhhhcccchhccCCchhhhhhhhhhhHHHHHHHHhhcCC
Q 000795 1156 DSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSLVVSALRVLSGLE 1235 (1281)
Q Consensus 1156 ~m~~d~~~~~~~~~i~~~L~~lc~~il~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~i~a~~pvvv~iL~~~~~l~ 1235 (1281)
|=|..+.+ -.-..+.++|+.+..-...-++..++. + .+...+.-==+-+.|.|+|+.|
T Consensus 452 R~~i~~A~---La~F~~~ivpla~sl~~K~~~l~~~~~-~------------------~~~~~tl~~QLW~LLP~FC~~P 509 (1176)
T KOG1248|consen 452 RDYIIGAS---LAFFTEYIVPLAMSLQLKAKKLKEAGS-Q------------------VSLYDTLVDQLWSLLPGFCNYP 509 (1176)
T ss_pred HHhhccCc---HHHHHHHHHHHHHHHHHHHHhhhhccC-c------------------HHHHHHHHHHHHHhChhhhCCC
Confidence 65554443 456677899999998887766666555 0 1122333333344589999998
Q ss_pred hHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHH
Q 000795 1236 RETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQ 1272 (1281)
Q Consensus 1236 ~~~F~~~~~~~ypll~~Li~~e~~~~evr~aL~~~f~ 1272 (1281)
-|. +.-.+.++|.++.-|... +|+|..+-.=++
T Consensus 510 ~Dl-~~sF~~la~~l~~al~~~---~elr~~Ic~sL~ 542 (1176)
T KOG1248|consen 510 VDL-AESFTDLAPILGAALLKR---PELRETICNSLR 542 (1176)
T ss_pred ccH-HHHHHHHHHHHHHHHhcc---hHhHHHHHHHHH
Confidence 875 334567778887777775 488887766554
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.87 E-value=6.7e+02 Score=34.23 Aligned_cols=351 Identities=17% Similarity=0.200 Sum_probs=198.5
Q ss_pred cCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHH
Q 000795 651 GLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSV 730 (1281)
Q Consensus 651 ~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~I 730 (1281)
+...+..+|.+|.--+|+++.|+-++ |+. .-|..+...+..+..+-+..-||..+-+.+..+-..-... +|+-+
T Consensus 46 ~~~~~p~~Rq~aaVl~Rkl~~~~w~~--l~~-e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPel 119 (1075)
T KOG2171|consen 46 ATSADPQVRQLAAVLLRKLLTKHWSR--LSA-EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPEL 119 (1075)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHhhc--CCH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHH
Confidence 34567889999988999999886542 111 1244555556666667777888888877777776554444 89999
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCC
Q 000795 731 FSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGG 810 (1281)
Q Consensus 731 F~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~ 810 (1281)
...|-.+..+.++.+=+.||-++..+-..+=... ...+.++...|.+ +-+..+..|=..|+.-+-..+.++-.
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q-~~~d~s~~vr~~a~rA~~a~~~~~~~-- 192 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQ-TMTDPSSPVRVAAVRALGAFAEYLEN-- 192 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHH-hccCCcchHHHHHHHHHHHHHHHhcc--
Confidence 9999999998889888999988876655432222 2233344443333 21111112433444333333332210
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccCCCCccc--chhhhHH-HHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChh
Q 000795 811 LVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDD--NSSFWVP-LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQ 887 (1281)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lW~p-LL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~ 887 (1281)
+++. ..+--+| ++..+.+++.+.+.+.-..++..|-+++.+-+..|++.
T Consensus 193 ----------------------------~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~ 244 (1075)
T KOG2171|consen 193 ----------------------------NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPH 244 (1075)
T ss_pred ----------------------------chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHH
Confidence 0011 2233556 88888888888888888999999999988777666553
Q ss_pred hHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHH----HhhHHHHHH
Q 000795 888 FWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVV----RSQLPGVVS 963 (1281)
Q Consensus 888 ~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l----~~~l~~~L~ 963 (1281)
+ ..|+. =.+....+ .+ -...+...||..++.+-.. =... ..+...++-
T Consensus 245 l-~~ii~----~~l~Ia~n-------------------~~---l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 245 L-SQIIQ----FSLEIAKN-------------------KE---LENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVP 296 (1075)
T ss_pred H-HHHHH----HHHHHhhc-------------------cc---ccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHH
Confidence 2 22222 11111111 11 1135677788877765332 1111 123334444
Q ss_pred HHHHhhcc----------------CCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhhhHHHhhhhccc
Q 000795 964 ILTGFIRS----------------PIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMND 1027 (1281)
Q Consensus 964 lL~~ci~q----------------~~~~la~ig~~~l~~Ll~~~g~~f~~~~W~~i~~~~~~l~~~t~~~~~~~~~~~~~ 1027 (1281)
.+..+++- +.++.+++|..++-+|-..-|++-= --.+...+..+...+-
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l~S~~------------ 361 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---LPPLFEALEAMLQSTE------------ 361 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe---hHHHHHHHHHHhcCCC------------
Confidence 44444431 1356888888888888777554320 0111111111111111
Q ss_pred ccCCCCCCccccccccCCCCCCCCCCchhhhhh--hHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 000795 1028 IEIPNTSQSYADMEMDSDHGSINDNIDEDNLQT--AAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIF 1105 (1281)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~cvlqLllIq~~~eL~~~~~~~l~~~~l~~ll~~L 1105 (1281)
|. ..+. +...+....| +-.|+.-+++++...-+.|...|-..=..++
T Consensus 362 -------------w~--------------~R~AaL~Als~i~EGc----~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 362 -------------WK--------------ERHAALLALSVIAEGC----SDVMIGNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred -------------HH--------------HHHHHHHHHHHHHccc----HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 10 0000 0111122233 5567778888888888888777777778888
Q ss_pred HHhhhhhhhhc
Q 000795 1106 SSIASHAHELN 1116 (1281)
Q Consensus 1106 ~~s~~fA~~fN 1116 (1281)
+...+++-||-
T Consensus 411 naigQ~stdl~ 421 (1075)
T KOG2171|consen 411 NAIGQMSTDLQ 421 (1075)
T ss_pred HHHHhhhhhhc
Confidence 88888887664
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=55.44 E-value=2.2e+02 Score=31.29 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 000795 640 WNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSR 719 (1281)
Q Consensus 640 W~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~ 719 (1281)
-+.+.+.+.+...+++..|+..|...|..++.. ..+-..++.++......+.++.+|..+++++..+++..
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~---------~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIES---------CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT---------S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH---------CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 345556666666677777888888888776621 11112232333333456778999999999999999998
Q ss_pred c---cccccC--cHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 000795 720 V---SNVKSG--WKSVFSIFTAAAADERKNIVLLAFETMEKIV 757 (1281)
Q Consensus 720 ~---~~IkSG--Wk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~ 757 (1281)
+ ..+..+ .+.+...+.....|.++++=..|.+++..+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 8 556554 4778888888888888877666666665443
No 38
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=53.75 E-value=2.1e+02 Score=33.71 Aligned_cols=128 Identities=9% Similarity=0.171 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcccccccCcHHHHHHHHHhh-----c--chhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHH
Q 000795 708 IIRCISQMVLSRVSNVKSGWKSVFSIFTAAA-----A--DERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL 780 (1281)
Q Consensus 708 iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa-----~--~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~ 780 (1281)
||.|+..+|..-++.+...=..|++.+=.+. + ...|+.-..=|+.++.|+..+++.+....++.|..+++++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi- 170 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI- 170 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH-
Confidence 6778888887777777766666665333221 1 2467888888999999998877654333378999999999
Q ss_pred HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHHHHhhhccC
Q 000795 781 TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSD 860 (1281)
Q Consensus 781 ~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d 860 (1281)
..+.+..+.+|+-.++..+......+.... . + ....-+..+++.+|...-.+.+|
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~-------~-------------~-----~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSKTN-------P-------------E-----FANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH-S-------H-------------H-----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhcC-------H-------------H-----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 556565667899988888776666554310 0 0 01112557788888888877766
Q ss_pred C
Q 000795 861 S 861 (1281)
Q Consensus 861 ~ 861 (1281)
+
T Consensus 226 ~ 226 (319)
T PF08767_consen 226 S 226 (319)
T ss_dssp T
T ss_pred c
Confidence 5
No 39
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=53.35 E-value=61 Score=37.68 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHhcCC-CCChhhH
Q 000795 861 SRSTIRKSSLEVLFNILKDHGH-LFPRQFW 889 (1281)
Q Consensus 861 ~r~eVR~~Al~tLF~iL~~~G~-~f~~~~W 889 (1281)
...+||..|++.+|+++..||. .|+...+
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3899999999999999999994 4444444
No 40
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=51.53 E-value=1.4e+02 Score=34.61 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcc
Q 000795 641 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 720 (1281)
Q Consensus 641 ~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~ 720 (1281)
+++.....-...|++..|+..|+.+|.-.+ .+++ ++ -++++.-|...+.. .+.+||-..++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~-~~-----a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDK-EL-----AKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhCh-HH-----HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 445555556667888899999999888766 3443 22 34455556666644 488999999999999999999
Q ss_pred cccccCcH---------HHHHHHHHhhcchhhHHHHHHHHHHH
Q 000795 721 SNVKSGWK---------SVFSIFTAAAADERKNIVLLAFETME 754 (1281)
Q Consensus 721 ~~IkSGWk---------~IF~iL~~aa~~~~~~iV~~aF~~l~ 754 (1281)
..+-..+. .+..+|.....+.++++-..|-+.+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77655443 46666666655555555555544444
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=49.21 E-value=6.4e+02 Score=31.72 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=137.9
Q ss_pred cHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhccccccc-CcHHHHHH
Q 000795 655 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSI 733 (1281)
Q Consensus 655 n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkS-GWk~IF~i 733 (1281)
+......+++.|+.+-. -+...++ ...+ .|+....-.++++.||.++++.|..++......+.- .=..++..
T Consensus 51 ~~e~v~~~~~iL~~~l~-~~~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 51 NREQVELICDILKRLLS-ALSPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred ChHHHHHHHHHHHHHHh-ccCHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 44444556666765432 2222332 1111 233333334678899999999999988665431110 11123444
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHhhhc--CcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCc
Q 000795 734 FTAAAADERKNIVLLAFETMEKIVREYF--PHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGL 811 (1281)
Q Consensus 734 L~~aa~~~~~~iV~~aF~~l~~I~~d~l--~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~ 811 (1281)
+-..-.+++..+.+.|-.+++.+.+... ..+.. .+. +..|.....+.. ..+-+...+++..++..
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~--~~~----~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~------ 190 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD--SNL----LSKLKSLMSQSS-DIVRCRVYELLVEIASH------ 190 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC--cch----HHHHHHHHhccC-HHHHHHHHHHHHHHHhc------
Confidence 4444456778888999999988875321 11210 111 444555443321 12333444433222210
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhH--HHHHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhH
Q 000795 812 VCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWV--PLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFW 889 (1281)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~--pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W 889 (1281)
+ ++...... .++..+-+...+++.=||-.|+++|-++-.+ ++-.
T Consensus 191 ------S----------------------~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~------~~g~ 236 (503)
T PF10508_consen 191 ------S----------------------PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET------PHGL 236 (503)
T ss_pred ------C----------------------HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC------hhHH
Confidence 0 00111222 2555555556668889999999999998772 2235
Q ss_pred HHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhh
Q 000795 890 MGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFI 969 (1281)
Q Consensus 890 ~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci 969 (1281)
..+.+.=+++.+..+...... ++. ..-+ -..-.++..+.++...-..+....+.++..+..++
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~--------------dp~-~~~~--~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~ 299 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEE--------------DPR-LSSL--LLPGRMKFFGNLARVSPQEVLELYPAFLERLFSML 299 (503)
T ss_pred HHHHhCCHHHHHHHHHhcccc--------------CCc-ccch--hhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Confidence 666666666666555442211 110 0001 11112233344444323334456688888888999
Q ss_pred ccCCcchhHHHHHHHHHHH
Q 000795 970 RSPIQGPASTGVAALLHLA 988 (1281)
Q Consensus 970 ~q~~~~la~ig~~~l~~Ll 988 (1281)
.+.+.+..-++..++-.+=
T Consensus 300 ~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred CCCChhHHHHHHHHHHHHh
Confidence 9888888888888775543
No 42
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=48.21 E-value=6.2e+02 Score=31.28 Aligned_cols=97 Identities=19% Similarity=0.339 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCc-cHhHHHHHHHHHHHHHHHhcchhh-hhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHH
Q 000795 640 WNVLSDFFVSVGLSE-NLSVAIFVMDSLRQLAMKFLEREE-LANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVL 717 (1281)
Q Consensus 640 W~vl~~hf~~v~~~~-n~~va~~AiDsLrqLs~kfLe~eE-L~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~ 717 (1281)
=.+|...+..++-+| |+...-|..+++-- ..|+..... -.--.|...++-||..|++++. .|.-.-|.+-+.+|++
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~-lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGA-LIRFVCEADPEAVSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHH-HHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHH-HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345555566666554 56677777777764 345543211 1112466778888999887664 3666678888999999
Q ss_pred hcc-cccccCcHHHHHHHHHhh
Q 000795 718 SRV-SNVKSGWKSVFSIFTAAA 738 (1281)
Q Consensus 718 ~~~-~~IkSGWk~IF~iL~~aa 738 (1281)
.+. ..+-.....+|..|-.+.
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGG
T ss_pred cCCCCCCcHHHHHHHHHHcCcc
Confidence 887 556556666666666554
No 43
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=47.26 E-value=81 Score=32.71 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCccHhHHHHHHHHHHHHHHHhcc---hhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHH
Q 000795 652 LSENLSVAIFVMDSLRQLAMKFLE---REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQ 714 (1281)
Q Consensus 652 ~~~n~~va~~AiDsLrqLs~kfLe---~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~q 714 (1281)
.|+|.++.++|+..|.- +++--. ..|++. ++|+..+..+.....+.+|++.|++.|.+
T Consensus 47 ~~~n~~v~l~AL~LLe~-~vkNCG~~fh~evas----k~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 47 NHKDPNVQLRALTLLDA-CAENCGKRFHQEVAS----RDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHCCHHHHHHHhh----HHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 47899999999865553 333221 123332 56777777777666889999999988874
No 44
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=44.52 E-value=1.8e+02 Score=35.60 Aligned_cols=113 Identities=11% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccc
Q 000795 851 LTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 930 (1281)
Q Consensus 851 L~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~ 930 (1281)
..-|..+..+++.+-|++|+.-|..++.. +.|+ .|+..|.++|.-+|+.+.... +
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e--~sfs--vWeq~f~~iL~~l~EvL~d~~------------------~--- 343 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCE--GSFS--VWEQHFAEILLLLLEVLSDSE------------------D--- 343 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHc--cchh--HHHHHHHHHHHHHHHHHccch------------------h---
Confidence 33344455678999999999999998874 3454 499999999999999886511 0
Q ss_pred cHHHhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh
Q 000795 931 WDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 990 (1281)
Q Consensus 931 W~~eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~ 990 (1281)
..-..+||+-+.++.++-=+.+..--.-...-+..+-+..++...+.+..|.-+++.+
T Consensus 344 --~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las 401 (516)
T KOG2956|consen 344 --EIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS 401 (516)
T ss_pred --hHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence 1334578888888776644333322222333344566777777778777776555444
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=44.01 E-value=92 Score=29.71 Aligned_cols=110 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccc
Q 000795 851 LTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 930 (1281)
Q Consensus 851 L~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~ 930 (1281)
+..|.+++.+...++|..|+.+|..+-.. .++.+..+...=++|.+-.+... .+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~------------------~~--- 62 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKS------------------ED--- 62 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhC------------------CC---
Confidence 44555666677799999999998886653 26667777774445544444331 01
Q ss_pred cHHHhHHHHHHHHHHHHHHhHHHHHhhH-HHHHHHHHHhhccCCcchhHHHHHHHHHHH
Q 000795 931 WDSETAAIGAECLVDIFICFFDVVRSQL-PGVVSILTGFIRSPIQGPASTGVAALLHLA 988 (1281)
Q Consensus 931 W~~eT~~~aL~~lv~lf~~yf~~l~~~l-~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll 988 (1281)
......|+..+..+-...-.....++ .+++..|..++..++..+.+.++.+|.+|.
T Consensus 63 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 63 --EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 13333444444444222212222233 347777888888778888888888887653
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=43.32 E-value=1.3e+02 Score=32.09 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHHHHH
Q 000795 862 RSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAE 941 (1281)
Q Consensus 862 r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~ 941 (1281)
.+.||+.|+-++-++...|+....+ |-..+ +..+.. ++ ..-...|+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~~~l-------~~~L~D-------------------~~-----~~VR~~al~ 47 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YLPNL-------YKCLRD-------------------ED-----PLVRKTALL 47 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HHHHH-------HHHHCC-------------------CC-----HHHHHHHHH
Confidence 3789999999999999999877766 43222 222221 11 134455666
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHh
Q 000795 942 CLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 990 (1281)
Q Consensus 942 ~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~ 990 (1281)
.+..|..+-+-... +.++.-+..|+.-++++|+..+..+|.++...
T Consensus 48 ~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 48 VLSHLILEDMIKVK---GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCceeeh---hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 66676555333333 33335556788999999999999999999887
No 47
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.38 E-value=1e+02 Score=31.79 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCccHhHHHHHHHHHHHHHHHhc-c--hhhhhhhhhhhhhhhhHHHHhhc-----CCchHHHHHHHHHHH
Q 000795 652 LSENLSVAIFVMDSLRQLAMKFL-E--REELANYNFQNEFLRPFVIIMQK-----SGSAEIRELIIRCIS 713 (1281)
Q Consensus 652 ~~~n~~va~~AiDsLrqLs~kfL-e--~eEL~~f~FQ~~fLkPfe~Im~~-----~~~~eIre~iL~cl~ 713 (1281)
.|+|..++++|+..|.- +++-- . ..|++. ++||..+..++.. .++..|++.|++.+.
T Consensus 48 ~~~n~~v~l~AL~LLe~-~vkNCG~~fh~evas----~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 48 QSPQEKEALQALTVLEA-CMKNCGERFHSEVGK----FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred cCCCHHHHHHHHHHHHH-HHHHcCHHHHHHHHh----HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 48899999999865553 33311 1 134443 3455555555542 367899999998776
No 48
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=41.87 E-value=1.5e+02 Score=28.62 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=54.2
Q ss_pred hhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHHHHHHHHHHHhh
Q 000795 685 QNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVRE 759 (1281)
Q Consensus 685 Q~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d 759 (1281)
-+.+++|...-+ ...+..||....+++.++.....+.+-.--..||..|.....|.+++ |+.|-+.|...++|
T Consensus 25 l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 25 LDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcC
Confidence 355677765543 35678899999999999998876666557788899888888887776 66666777665543
No 49
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=39.62 E-value=1.3e+02 Score=31.09 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=37.8
Q ss_pred CCccHhHHHHHHHHHHHHHHHhc-c--hhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHH
Q 000795 652 LSENLSVAIFVMDSLRQLAMKFL-E--REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCIS 713 (1281)
Q Consensus 652 ~~~n~~va~~AiDsLrqLs~kfL-e--~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~ 713 (1281)
.|+|..+..+|+..|.-+. +-- . ..|++. ++|+..+..+.....+..|++.+++.|.
T Consensus 51 ~~~n~~vql~AL~LLe~~v-kNCG~~fh~evas----~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 51 LSKNPNVQLYALLLLESCV-KNCGTHFHDEVAS----REFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred cCCChHHHHHHHHHHHHHH-HHCCHHHHHHHhh----HHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 4688889999986665433 311 1 123332 4566667777666788999999988776
No 50
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=38.49 E-value=3.2e+02 Score=30.89 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=64.9
Q ss_pred cchhhhHHHHHHHhhhccCC-----hHHHHHHHHH--HHHHHHHhcCCCC--ChhhHHHHHHhccc--ccccccccccCC
Q 000795 842 DNSSFWVPLLTGLSKLTSDS-----RSTIRKSSLE--VLFNILKDHGHLF--PRQFWMGVYSHVIF--PIFNGVCDKKDM 910 (1281)
Q Consensus 842 ~~~~lW~pLL~~L~~l~~d~-----r~eVR~~Al~--tLF~iL~~~G~~f--~~~~W~~i~~~VLf--Pif~~l~~~~~~ 910 (1281)
.|..+|--|+.-+.-+++.. .+.|..-+.+ .+|....+||+.| +|..-+..|-+++- |+|+.+......
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~ 137 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLR 137 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhh
Confidence 38889988877666664332 2344444444 4588888999988 77788888877765 667766543322
Q ss_pred CCCCCCCCCCCCCCCCcccccHHHhHHHHHHHHHHHHHHhHHHHH
Q 000795 911 PDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVR 955 (1281)
Q Consensus 911 ~~~~~~~~~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~yf~~l~ 955 (1281)
..+. ...+.+.+ +.....++.++..+-.||-..+.
T Consensus 138 ~~~~---------~~~~~~~~-~~~~~~sl~nl~~I~~Hf~~ki~ 172 (237)
T PF08427_consen 138 SSTS---------SSSEYKDS-SDKLTNSLDNLRSIISHFESKIE 172 (237)
T ss_pred ccCC---------Cccccccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11222333 25667888888888777766555
No 51
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=1e+03 Score=30.96 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=45.2
Q ss_pred cHhHHHHHHHHHHHHHHHhcc---hhhhhhhhhhhhhhhhHHH---HhhcCCchHHHHHHHHHHHHHHHhccccccc-Cc
Q 000795 655 NLSVAIFVMDSLRQLAMKFLE---REELANYNFQNEFLRPFVI---IMQKSGSAEIRELIIRCISQMVLSRVSNVKS-GW 727 (1281)
Q Consensus 655 n~~va~~AiDsLrqLs~kfLe---~eEL~~f~FQ~~fLkPfe~---Im~~~~~~eIre~iL~cl~qmi~~~~~~IkS-GW 727 (1281)
+...+..-...|..+-+|.=+ .....+-+=++.+| ||. ++....+++.-...+.-|.+++..+-.|||- +-
T Consensus 273 D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVL--FeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL 350 (938)
T KOG1077|consen 273 DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVL--FEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL 350 (938)
T ss_pred CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 334444444555555444332 12233334445555 443 3445567777777777778888888888877 66
Q ss_pred HHHHHHHHH
Q 000795 728 KSVFSIFTA 736 (1281)
Q Consensus 728 k~IF~iL~~ 736 (1281)
.++-.+.+.
T Consensus 351 Esm~~L~ss 359 (938)
T KOG1077|consen 351 ESMCKLASS 359 (938)
T ss_pred HHHHHHHhc
Confidence 666555544
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.54 E-value=4e+02 Score=34.22 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=97.4
Q ss_pred HHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccch-hhhHHHHHHHHHHhcCCccHhHHHHHHHHHHHHHH
Q 000795 593 VAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVW-SRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAM 671 (1281)
Q Consensus 593 ~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl~W-~~iW~vl~~hf~~v~~~~n~~va~~AiDsLrqLs~ 671 (1281)
-+.+-+||++-..+-.....+.+=.|+|+-|=+- +++...| .+--+++-+-|.+...|+++.+|..|+.++.|..+
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 3455666665332221122455667777765432 2222233 23346788889999999999999999999988542
Q ss_pred Hhcchhhhhhhhhh-hhhhhhHHHHh--hcCCchHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcchhhHHHHH
Q 000795 672 KFLEREELANYNFQ-NEFLRPFVIIM--QKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLL 748 (1281)
Q Consensus 672 kfLe~eEL~~f~FQ-~~fLkPfe~Im--~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~ 748 (1281)
- ...-+ -+. ..|| +.++ .+..+++||..|=+.+.-+++.+-+.|-+.-+.|.+-.-....|.++++.--
T Consensus 204 ~--~~qal---~~~iD~Fl---e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 204 I--QTQAL---YVHIDKFL---EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred c--CcHHH---HHHHHHHH---HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHH
Confidence 1 11111 001 1232 3443 3556899999999999999999999999988888887666666777775555
Q ss_pred HHHHHHHH
Q 000795 749 AFETMEKI 756 (1281)
Q Consensus 749 aF~~l~~I 756 (1281)
|-+-.--+
T Consensus 276 ACEFwla~ 283 (885)
T KOG2023|consen 276 ACEFWLAL 283 (885)
T ss_pred HHHHHHHH
Confidence 55544333
No 53
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.44 E-value=2.8e+02 Score=36.74 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhccccccc-CcHHHHH-HHHHhhcchhhHHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHH-
Q 000795 704 IRELIIRCISQMVLSRVSNVKS-GWKSVFS-IFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL- 780 (1281)
Q Consensus 704 Ire~iL~cl~qmi~~~~~~IkS-GWk~IF~-iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~- 780 (1281)
-|..+.+-+..+++.+-..|+| |=.-.|+ ++.++.++++|.-.-.+|..++.|..--++.=+ ....+-|.+-|-.
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~--F~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGP--FTEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCc--cHHHHHHHhheeee
Confidence 4666777778888899999999 9999998 788888899999999999999999873333211 1233334444432
Q ss_pred -HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHHHHhhhcc
Q 000795 781 -TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTS 859 (1281)
Q Consensus 781 -~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~ 859 (1281)
.|.-.+.|.+. .+.=++-..+...| +..+.+..+-+|+|.. =.+
T Consensus 221 I~Fkppk~D~~~-I~reDL~~sLr~al-------------------------------~stP~Fa~~~lp~LlE---KL~ 265 (1030)
T KOG1967|consen 221 ITFKPPKDDTIT-IRREDLKASLRSAL-------------------------------VSTPSFAPFALPLLLE---KLN 265 (1030)
T ss_pred eeccCCCCCccc-ccHHHHHHHHHHHH-------------------------------hcCccchhhHHHHHHH---Hhc
Confidence 23333333321 11111111111111 1222344566665543 234
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhccccccc
Q 000795 860 DSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFN 902 (1281)
Q Consensus 860 d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~ 902 (1281)
++.+-+..-+++||-++...||..==-.+|...+..+=+-|+.
T Consensus 266 as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 266 ASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred cccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 5667788899999999999999552122355544433333333
No 54
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=36.31 E-value=2.8e+02 Score=29.75 Aligned_cols=153 Identities=13% Similarity=0.210 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhhHHHHH
Q 000795 773 TDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLT 852 (1281)
Q Consensus 773 ~d~I~cL~~F~~~~~~~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~ 852 (1281)
.-+|.||.. ++++-+.+..|+.+...++..-+.+ . ..-|.-|..
T Consensus 6 plLIsCL~~-------q~~k~s~~KiL~~iVs~Va~~v~~~-------------------------~----~~~W~eL~d 49 (174)
T PF04510_consen 6 PLLISCLTM-------QETKESDFKILRRIVSHVAYEVFDL-------------------------Q----EGGWDELSD 49 (174)
T ss_pred HHHHHHHHh-------hcccHhHHHHHHHHHHHHHHHHHhc-------------------------C----CCCchhHHH
Confidence 356778866 4677667777877766665432211 1 123444444
Q ss_pred HHhhhccCChHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccH
Q 000795 853 GLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD 932 (1281)
Q Consensus 853 ~L~~l~~d~r~eVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~ 932 (1281)
++..... ..+ .+|..+|.++=..+ ..+|-...++. |+|-+......++ ..+.+.|.
T Consensus 50 ~Ils~~~-~e~---~kA~~IF~~L~~~l----~~efl~~~~~~-L~~~~~~~L~~p~---------------~~d~~~W~ 105 (174)
T PF04510_consen 50 CILSLSE-NEP---VKAFHIFICLPMPL----YGEFLIPFMEN-LLPEISKVLLPPE---------------EVDVEDWV 105 (174)
T ss_pred HHHHhhc-cch---HHHHHHHHhCCchh----hhhHHHHHHHH-HHHHHHHHcCCch---------------hccHHHHH
Confidence 4444331 111 45666555432121 22333344443 4555544443221 23444564
Q ss_pred HHhHHHHHHHHHHHHHHhHHH------HHhhHHHHHHHHHHhhccCCc-chhHHHHHHHHHHHHh
Q 000795 933 SETAAIGAECLVDIFICFFDV------VRSQLPGVVSILTGFIRSPIQ-GPASTGVAALLHLAGE 990 (1281)
Q Consensus 933 ~eT~~~aL~~lv~lf~~yf~~------l~~~l~~~L~lL~~ci~q~~~-~la~ig~~~l~~Ll~~ 990 (1281)
+|+.+.+..+.|..+. +..++..+++-+.+.+..+.| +..+=|-.-++.++..
T Consensus 106 -----LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 106 -----LALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred -----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 8999998888886643 444555666666667778998 8998888888888765
No 55
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=32.86 E-value=6.7e+02 Score=27.49 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhcCCHHHHHHHHHhhcccCCCC-------C-Cchh----hh
Q 000795 1076 LLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSD-------P-PMVH----FE 1143 (1281)
Q Consensus 1076 LllIq~~~eL~~~~~~~l~~~~l~~ll~~L~~s~~fA~~fN~~~~Lr~~L~k~g~~~~~~~-------P-nLLk----QE 1143 (1281)
-..++.+..+|+..+.. ....+..++..|.+-.... +|....++...+=.|- ..|.+ | |+-. ++
T Consensus 18 ~~vl~v~s~lf~~lg~~-~~~~l~~~L~~l~~lr~~~-~f~~~~~~e~~lgaAi--~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGER-SSPLLKPILKTLGDLRESE-DFSFRKELEQVLGAAI--RAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHH--HHCCHHHHHHHCCCCccCCCcCCc
Confidence 34466666777766644 4455555555555543222 2555555554444331 11111 1 2221 22
Q ss_pred hHHHHHHHHHHHHhhcCCCCcchHHhHHHHHHHHHHHHHHHHHccccchhHHHHhhhcccchhccCCchhhhhhhhhhhH
Q 000795 1144 NESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSL 1223 (1281)
Q Consensus 1144 ~~S~~~yl~iL~~m~~d~~~~~~~~~i~~~L~~lc~~il~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~i~a~~pv 1223 (1281)
.-+ |+--++|-|..+. +-.--.+.++|+....-+.-.+....+. ..+...|.-+
T Consensus 94 ~ra---WLLPlLr~~i~~~---~L~fF~~~~lPla~~~~~~~~~~~~~~~--------------------~~~ak~~~~l 147 (198)
T PF08161_consen 94 GRA---WLLPLLRDHIRNA---SLSFFVEEFLPLARRLRQKAQKASEAGK--------------------SVEAKIYETL 147 (198)
T ss_pred ccc---hhHHHHHHhccCC---ChHHHHHHHHHHHHHHHHHHHHHhhccc--------------------hHHHHHHHHH
Confidence 233 3445555454333 3455666788888776555443222222 2333445555
Q ss_pred HHH---HHHHhhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHHHHHH
Q 000795 1224 VVS---ALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQ 1272 (1281)
Q Consensus 1224 vv~---iL~~~~~l~~~~F~~~~~~~ypll~~Li~~e~~~~evr~aL~~~f~ 1272 (1281)
+.. .|.++|..+.|.= ...+.|-+++..++... +|+|..+-.-++
T Consensus 148 ~~QlWslLP~FC~~P~D~~-~~F~~~a~~L~~~L~~~---~~LR~~Ic~aL~ 195 (198)
T PF08161_consen 148 VQQLWSLLPGFCNYPTDLA-ESFPSFAKLLGNALYDQ---PDLRPIICQALR 195 (198)
T ss_pred HHHHHHHhHHhcCCcccHH-HHHHHHHHHHHHHHhcC---cchHHHHHHHHH
Confidence 554 5999999987654 45599999999999885 589988877665
No 56
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.65 E-value=6.2e+02 Score=27.24 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhH-----HHHhhcCCchHHHHHHHHHHHHHHHhcc
Q 000795 646 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPF-----VIIMQKSGSAEIRELIIRCISQMVLSRV 720 (1281)
Q Consensus 646 hf~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPf-----e~Im~~~~~~eIre~iL~cl~qmi~~~~ 720 (1281)
++.+.+.+++..+|..|++.+..+.. .-+..|- ..-+..+++..||....+.+..+-+.+.
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~--------------qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILR--------------QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHh--------------cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 44567778899999999988876542 2233343 3345567899999999999999988887
Q ss_pred ccccc----CcHHHHHHHHH
Q 000795 721 SNVKS----GWKSVFSIFTA 736 (1281)
Q Consensus 721 ~~IkS----GWk~IF~iL~~ 736 (1281)
+-+.+ |=+..|..-..
T Consensus 78 s~v~~~~~~gi~~af~~~~~ 97 (187)
T PF12830_consen 78 SLVESRYSEGIRLAFDYQRR 97 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65543 44444444433
No 57
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.15 E-value=1.6e+02 Score=27.67 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 000795 934 ETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLH 986 (1281)
Q Consensus 934 eT~~~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~ 986 (1281)
+.....++.+..+...+.+.+..-|+-+++.|......+++.+.+.|-.|++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 66778888888888888999999999999999999999999999999998864
No 58
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.63 E-value=5.9e+02 Score=26.24 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=34.8
Q ss_pred HhcCCccHhHHHHHHHHHHHHHHHhcc---hhhhhhhhhhhhhhhh-HHHHhhc--CCchHHHHHHHHHHH
Q 000795 649 SVGLSENLSVAIFVMDSLRQLAMKFLE---REELANYNFQNEFLRP-FVIIMQK--SGSAEIRELIIRCIS 713 (1281)
Q Consensus 649 ~v~~~~n~~va~~AiDsLrqLs~kfLe---~eEL~~f~FQ~~fLkP-fe~Im~~--~~~~eIre~iL~cl~ 713 (1281)
++..++|..+..+|+..|.-+ +|--. ..|++. ++|+.. +..++.. +...+|++.|++.|.
T Consensus 46 Rl~~~~n~~v~l~aL~LLe~~-vkNCG~~fh~eias----k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 46 RLNGNKNHKEVMLTLTVLETC-VKNCGHRFHVLVAK----KDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred HHccCCCHHHHHHHHHHHHHH-HHHccHHHHHHHHH----HHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 343457888888887555433 22111 123332 466665 6666642 245689988887766
No 59
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.82 E-value=4.3e+02 Score=27.72 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChh----hHHHHHHhcccccccccccccCCCCCCCCCCCCCCCCCCcccccHHHhHHH
Q 000795 863 STIRKSSLEVLFNILKDHGHLFPRQ----FWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAI 938 (1281)
Q Consensus 863 ~eVR~~Al~tLF~iL~~~G~~f~~~----~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~~~~~s~~~e~~~W~~eT~~~ 938 (1281)
...|.-|++.+-.+|..+|..|... .-..+++.-+.|.+-.... . +. ......
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~------------------~---~~--~~i~~~ 92 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLS------------------S---SD--FPIFSR 92 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHh------------------h---hh--hHHHHH
Confidence 4678889999999999999988732 2444444445554433321 0 11 367778
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 000795 939 GAECLVDIFICFFDVVRSQLPGVVSILTG 967 (1281)
Q Consensus 939 aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ 967 (1281)
+++-+..++.+|-..+...+.-++..+..
T Consensus 93 slri~~~l~~~~~~~Lk~ele~~l~~i~~ 121 (168)
T PF12783_consen 93 SLRIFLTLLSRFRSHLKLELEVFLSHIIL 121 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89989999888887777666666665544
No 60
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.74 E-value=5e+02 Score=29.95 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=73.8
Q ss_pred chhhhHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhcC-CC---CChhhHHHHHHhcccccccccccccCCCCCCCCCC
Q 000795 843 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG-HL---FPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDS 918 (1281)
Q Consensus 843 ~~~lW~pLL~~L~~l~~d~r~eVR~~Al~tLF~iL~~~G-~~---f~~~~W~~i~~~VLfPif~~l~~~~~~~~~~~~~~ 918 (1281)
..+.|--++=.+-.++-|..+++|-.+++.|-.++..-. .. |...-...+|...|+|.+-.+....
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~t---------- 182 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPIT---------- 182 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCC----------
Confidence 445666666667777789999999999999999998433 22 3333345566666666666654311
Q ss_pred CCCCCCCCcccccHHHhHHHHHHHHHHHHHH--------hHHHHHhhHH-HHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 000795 919 PTSHSPLSEGSTWDSETAAIGAECLVDIFIC--------FFDVVRSQLP-GVVSILTGFIRSPIQGPASTGVAALLHLAG 989 (1281)
Q Consensus 919 ~~~~s~~~e~~~W~~eT~~~aL~~lv~lf~~--------yf~~l~~~l~-~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~ 989 (1281)
.++. .. .-...|...+..|+.. +...+...+. ++|.-+.-+..-++..+...-...+..++.
T Consensus 183 ------p~~~--s~-~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 183 ------PEDE--SL-ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred ------Cchh--hH-HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 1121 21 3344444555555432 2222222221 133333333333357777777777777777
Q ss_pred hhCC
Q 000795 990 ELGS 993 (1281)
Q Consensus 990 ~~g~ 993 (1281)
.-|.
T Consensus 254 ~lGi 257 (282)
T PF10521_consen 254 ELGI 257 (282)
T ss_pred Hhcc
Confidence 6544
No 61
>PRK09687 putative lyase; Provisional
Probab=28.51 E-value=8.8e+02 Score=27.99 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred HHHhcCCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccC
Q 000795 647 FVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSG 726 (1281)
Q Consensus 647 f~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSG 726 (1281)
+...-.|++..|+..|+..|+++- . .+.+.++.. +..+.+..+|...+..|.++-.... +
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~-----~---------~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~-----~ 87 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRG-----G---------QDVFRLAIE-LCSSKNPIERDIGADILSQLGMAKR-----C 87 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC-----c---------chHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCcc-----c
Confidence 334446888889998888877543 1 122233333 2456688999999999988532111 0
Q ss_pred cHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHh
Q 000795 727 WKSVFSIFTAA-AADERKNIVLLAFETMEKIVR 758 (1281)
Q Consensus 727 Wk~IF~iL~~a-a~~~~~~iV~~aF~~l~~I~~ 758 (1281)
=..++..|... ..|+++.+-..|...+-.+..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 12466777654 455555555567777665543
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=27.04 E-value=1.3e+02 Score=27.36 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=46.3
Q ss_pred CCccHhHHHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCcHHHH
Q 000795 652 LSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVF 731 (1281)
Q Consensus 652 ~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGWk~IF 731 (1281)
.+++..++..|+..|.++. . .+.+.++...+ .+.++.||..++..+.++ |.+.++
T Consensus 10 ~~~~~~vr~~a~~~L~~~~-----~---------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG-----D---------PEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT-----H---------HHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC-----C---------HhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 5788889998887776321 1 23455566655 568899999999999865 445566
Q ss_pred HHHHHhhcchhhHHHH
Q 000795 732 SIFTAAAADERKNIVL 747 (1281)
Q Consensus 732 ~iL~~aa~~~~~~iV~ 747 (1281)
..|.....+.....|+
T Consensus 65 ~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVR 80 (88)
T ss_dssp HHHHHHHTC-SSHHHH
T ss_pred HHHHHHHcCCCcHHHH
Confidence 6666655544444443
No 63
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.48 E-value=2.4e+02 Score=28.74 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=35.8
Q ss_pred CccHhHHHHHHHHHHHHHHHhcc--hhhhhhhhhhhhhhhhHHHHhhcCCch-HHHHHHHHHHHH
Q 000795 653 SENLSVAIFVMDSLRQLAMKFLE--REELANYNFQNEFLRPFVIIMQKSGSA-EIRELIIRCISQ 714 (1281)
Q Consensus 653 ~~n~~va~~AiDsLrqLs~kfLe--~eEL~~f~FQ~~fLkPfe~Im~~~~~~-eIre~iL~cl~q 714 (1281)
|+|+.+..+|+..|-.+..---. ..|++. ++|+..+..+....... .|++.+++.+.+
T Consensus 48 ~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s----~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 48 NKNPHVALLALTLLDACVKNCGSKFHLEVAS----KEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 68889999998776654421111 123332 45666677766655443 488888877764
No 64
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.93 E-value=5.8e+02 Score=32.30 Aligned_cols=125 Identities=15% Similarity=0.277 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcchhhh------------hhhhhhhhhhhhHHHHhhcCCchHHHHHHHHHHHHHHHhcccccccCc
Q 000795 660 IFVMDSLRQLAMKFLEREEL------------ANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGW 727 (1281)
Q Consensus 660 ~~AiDsLrqLs~kfLe~eEL------------~~f~FQ~~fLkPfe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkSGW 727 (1281)
.-|||.+|.||.+|-.+... .+|.|-+-.......+|.. .++-||++|+.|+..|+.+--+
T Consensus 393 iI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~----- 465 (898)
T COG5240 393 IIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYH----- 465 (898)
T ss_pred EEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchh-----
Confidence 34667778787766543211 2445555444444455544 3588999999999999876322
Q ss_pred HHHHHHHHHhhcc----hhh-HHHHHHHHHHHHHHhhhcCcccccccchHHHHHHHHHHHHcCCCCccccHHHH-HHHHH
Q 000795 728 KSVFSIFTAAAAD----ERK-NIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAI-AFLRF 801 (1281)
Q Consensus 728 k~IF~iL~~aa~~----~~~-~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~~~niSL~AI-~~L~~ 801 (1281)
+....||..-.++ +.| .-|+.-|. .|+-+. .+ .=.-.|.||++|+-+..|. .+-.++ ..|+.
T Consensus 466 ~I~vrIL~iLG~EgP~a~~P~~yvrhIyN---R~iLEN--~i------vRsaAv~aLskf~ln~~d~-~~~~sv~~~lkR 533 (898)
T COG5240 466 QITVRILGILGREGPRAKTPGKYVRHIYN---RLILEN--NI------VRSAAVQALSKFALNISDV-VSPQSVENALKR 533 (898)
T ss_pred HHHHHHHHHhcccCCCCCCcchHHHHHHH---HHHHhh--hH------HHHHHHHHHHHhccCcccc-ccHHHHHHHHHH
Confidence 1223344443332 122 22333222 222121 11 1245678899998665543 444444 34555
Q ss_pred HH
Q 000795 802 CA 803 (1281)
Q Consensus 802 ~~ 803 (1281)
|.
T Consensus 534 cl 535 (898)
T COG5240 534 CL 535 (898)
T ss_pred Hh
Confidence 53
No 65
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.66 E-value=1.2e+02 Score=22.50 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=22.2
Q ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHH
Q 000795 644 SDFFVSVGLSENLSVAIFVMDSLRQLA 670 (1281)
Q Consensus 644 ~~hf~~v~~~~n~~va~~AiDsLrqLs 670 (1281)
-++|.+..++++..||..|+..|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456778888999999999999998876
No 66
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=25.05 E-value=1.3e+02 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCccccc-HHHhHHHHHHHHHHHHHHhHHHHH
Q 000795 925 LSEGSTW-DSETAAIGAECLVDIFICFFDVVR 955 (1281)
Q Consensus 925 ~~e~~~W-~~eT~~~aL~~lv~lf~~yf~~l~ 955 (1281)
..+...| ++|....|+.|+|++|..|+...+
T Consensus 13 r~esRT~~DYesv~e~megiCk~yEe~Lkk~n 44 (104)
T KOG1766|consen 13 RPESRTWGDYESVTECMEGICKMYEEHLKKKN 44 (104)
T ss_pred CcccccccchHhHHHHHHHHHHHHHHHHHhcC
Confidence 3455567 578999999999999999998764
No 67
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.62 E-value=1.4e+03 Score=28.40 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=45.5
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 000795 946 IFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREI 1003 (1281)
Q Consensus 946 lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g~~f~~~~W~~i 1003 (1281)
+...||..++..+-+++..+..|+-.....+---|..|+..+..+.+....++.|+.-
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~ 338 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAP 338 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccch
Confidence 4455677677667777788888888888888888889999999988877778888753
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=22.75 E-value=1.2e+02 Score=25.42 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHH
Q 000795 938 IGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHL 987 (1281)
Q Consensus 938 ~aL~~lv~lf~~yf~~l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~L 987 (1281)
.|+..++.+-....+.+....++++..|..++..+++.+...++.+|.+|
T Consensus 6 ~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45555555444556667788899999999999989998888888887543
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.28 E-value=1.2e+03 Score=30.71 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=59.4
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhccccccc-CcHHHHHHHHHh---h-----------cchhhHHHHHHHHHHHHH
Q 000795 692 FVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAA---A-----------ADERKNIVLLAFETMEKI 756 (1281)
Q Consensus 692 fe~Im~~~~~~eIre~iL~cl~qmi~~~~~~IkS-GWk~IF~iL~~a---a-----------~~~~~~iV~~aF~~l~~I 756 (1281)
...||.-..+...|++.+.||..++.++..|||- |-++...++..- + +|.+..|-+.|++..-.+
T Consensus 298 V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 298 VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3467877788899999999999999999999998 777766665421 1 244556666777766555
Q ss_pred HhhhcCcccccccchHHHHHHHHHHHHcC
Q 000795 757 VREYFPHITETESTTFTDCVKCLLTFTNS 785 (1281)
Q Consensus 757 ~~d~l~~l~~~~~~~f~d~I~cL~~F~~~ 785 (1281)
+++ .+..-+|+=|.+|-.+
T Consensus 378 vn~----------~Nv~~mv~eLl~fL~~ 396 (866)
T KOG1062|consen 378 VNE----------SNVRVMVKELLEFLES 396 (866)
T ss_pred hcc----------ccHHHHHHHHHHHHHh
Confidence 432 4566667777777633
No 70
>PLN03205 ATR interacting protein; Provisional
Probab=22.07 E-value=2.4e+02 Score=33.72 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcCCc-cHhHHHHHH
Q 000795 585 QRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSE-NLSVAIFVM 663 (1281)
Q Consensus 585 ~~L~~eAi~~fv~ALc~vS~eel~~~~~pr~F~LqKLveVa~~Nm~Rirl~W~~iW~vl~~hf~~v~~~~-n~~va~~Ai 663 (1281)
...+-+++++-+--||.+-..-+-. -..--|..+.+=...|..|+.-.|.--|-.+-+..++++... ...|+..|+
T Consensus 317 G~V~lqtLlEaLLdLC~v~n~a~V~---RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAv 393 (652)
T PLN03205 317 GFVNLKSLVEPLLDLCKAETAVLVH---RSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEAL 393 (652)
T ss_pred CeeeHHHHHHHHHHHHhcCchhhhH---HHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehh
Confidence 4455555555555556554333321 112345666666778889999999999999999999887544 345888887
Q ss_pred HHHHHHHHHh
Q 000795 664 DSLRQLAMKF 673 (1281)
Q Consensus 664 DsLrqLs~kf 673 (1281)
....-+.|+-
T Consensus 394 SIMnVIlmss 403 (652)
T PLN03205 394 SIMNIIVMST 403 (652)
T ss_pred hhhHHhhhcc
Confidence 6665555553
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=21.72 E-value=5e+02 Score=25.01 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHhhCC
Q 000795 954 VRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 993 (1281)
Q Consensus 954 l~~~l~~~L~lL~~ci~q~~~~la~ig~~~l~~Ll~~~g~ 993 (1281)
+...++.++..+..|+.-++..+...++++|-++....+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~ 60 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG 60 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888999999999999999999999876543
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=20.48 E-value=1.9e+02 Score=24.10 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=28.7
Q ss_pred hhcCChHHHHHHhhhHhHHHHHHHcCCCCchhHHHHHH
Q 000795 1231 LSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLG 1268 (1281)
Q Consensus 1231 ~~~l~~~~F~~~~~~~ypll~~Li~~e~~~~evr~aL~ 1268 (1281)
+.+-.++..+.|++.+.|.+..++.-+ .++||.+--
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L~d~--~~~VR~~A~ 49 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLLQDD--DDSVRAAAA 49 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTSS--SHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH
Confidence 446678999999999999999999654 348987643
No 73
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.48 E-value=3.2e+02 Score=27.72 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=39.0
Q ss_pred CccHhHHHHHHHHHHHHHHHhcc--hhhhhhhhhhhhhhhhHHHHhhc--CCchHHHHHHHHHHHHHHH
Q 000795 653 SENLSVAIFVMDSLRQLAMKFLE--REELANYNFQNEFLRPFVIIMQK--SGSAEIRELIIRCISQMVL 717 (1281)
Q Consensus 653 ~~n~~va~~AiDsLrqLs~kfLe--~eEL~~f~FQ~~fLkPfe~Im~~--~~~~eIre~iL~cl~qmi~ 717 (1281)
|+|..+...|+..|..+..---. ..|++. ++||..+..+... ..+.+||+.+++.+...-.
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s----~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPFHLQVAD----KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHHHHHHhh----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67888888888777654422111 123332 3566666666655 5788999999988875433
Done!