Query 000795
Match_columns 1281
No_of_seqs 379 out of 1094
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 15:56:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000795.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_567-571//hhsearch_pdb/000795hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 488.2 20.5 198 114-311 10-209 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 483.4 21.6 195 117-311 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 474.0 18.8 197 113-311 14-227 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 454.3 20.4 191 123-313 8-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 452.2 22.6 192 120-311 12-203 (347)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 45.7 36.0 310 614-995 348-674 (861)
7 4fdd_A Transportin-1; heat rep 1.0 1 1 45.4 37.5 299 641-995 358-664 (852)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 45.0 33.2 137 614-758 376-512 (852)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 44.7 32.9 106 850-991 857-962 (1230)
10 1u6g_C TIP120 protein, CAND1; 1.0 1 1 44.4 21.1 29 960-988 856-884 (1230)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=488.16 Aligned_cols=198 Identities=52% Similarity=0.913 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 88999999789999999997049123189999649999998999998341489983457631025731679999999861
Q 000795 114 ATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDS 193 (1281)
Q Consensus 114 ~~~~~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~l~k~~ig~yLg~~~~~~~~vl~~y~~~ 193 (1281)
.++|++|++|..+++|+.+||+|||+||+||+++|+|+++|++||+||+.+++|||++||+|||+++++|.+||++|++.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 799999928999998703868984689999999999999560999--989911899999999883122121004799997
Q 000795 194 FNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 271 (1281)
Q Consensus 194 ~df~~~~~~~aLR~fl~~f~lpgE~q~idril~~Fa~~y~~~Np~--~f~~~d~~y~la~siimLntdlhn~~~k~kmt~ 271 (1281)
|||+|+++|+|||.||.+||||||+|+|||||++||+|||+|||+ .|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8788841478899999788999999997617444467899
Q 000795 272 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 311 (1281)
Q Consensus 272 ~~Fi~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~ 311 (1281)
++||+|+||+|+|+|||+++|++||++|+++||+|+++..
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999986543678999999999999999848762789988
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=483.42 Aligned_cols=195 Identities=52% Similarity=0.876 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999789999999997049123189999649999998999998341489983457631025731679999999861799
Q 000795 117 EQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNF 196 (1281)
Q Consensus 117 ~~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~l~k~~ig~yLg~~~~~~~~vl~~y~~~~df 196 (1281)
++.+++|..+..|+.+||.+||+||+||+++|+++++|++||+||+.++||+|++||+|||+++++|.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99992899999870386898468999999999999956099998991189999999988312212100479999787888
Q 000795 197 KGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIR 276 (1281)
Q Consensus 197 ~~~~~~~aLR~fl~~f~lpgE~q~idril~~Fa~~y~~~Np~~f~~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~ 276 (1281)
+|+++|+|||.||.+||||||+|+|||||++||+|||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 41478899999788999999997617444467899
Q 000795 277 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 311 (1281)
Q Consensus 277 n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~ 311 (1281)
|+||+|+|+|+|+++|++||++|+.+||++++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=473.96 Aligned_cols=197 Identities=36% Similarity=0.611 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHC-CCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 5889999997899999999970491231899996499999-989999983414-89983457631025731679999999
Q 000795 113 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEVASFLKNT-TGLNETMIGDYLGEREEFSLKVMHAY 190 (1281)
Q Consensus 113 ~~~~~~~~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~-~p~~iA~fL~~~-~~l~k~~ig~yLg~~~~~~~~vl~~y 190 (1281)
..+++++|++|..+.+|+.+||++||+||+||+++|+|++ +|++||+||+.+ ++|||++||+|||+++ +.+||++|
T Consensus 14 ~~~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~y 91 (230)
T 1ku1_A 14 LVPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEY 91 (230)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHH
T ss_conf 8699999999999999999995499999999998898389998999999997276569999999980821--79999999
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCHHHHHHHHHHH
Q ss_conf 86179999992899999870386898468999999999999956099---------------998991189999999988
Q 000795 191 VDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP---------------SSFTSADTAYVLAYSVIM 255 (1281)
Q Consensus 191 ~~~~df~~~~~~~aLR~fl~~f~lpgE~q~idril~~Fa~~y~~~Np---------------~~f~~~d~~y~la~siim 255 (1281)
++.|||+|+++|+|||.||.+||||||+|+|||||++||+|||+||| ..|.++|+||+|+||+||
T Consensus 92 v~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiIm 171 (230)
T 1ku1_A 92 IRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIM 171 (230)
T ss_dssp HHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 85426799979999999998085885199999999999999998187775321010011223455770289999999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 31221210047999978788841478899999788999999997617444467899
Q 000795 256 LNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 311 (1281)
Q Consensus 256 Lntdlhn~~~k~kmt~~~Fi~n~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~ 311 (1281)
||||+|||+||+|||+++||+|+||+|+|+|||+++|++||++|+.+||+|++++.
T Consensus 172 LNTDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~ 227 (230)
T 1ku1_A 172 LNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH 227 (230)
T ss_dssp HHHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 80130264346777799999986465677888899999999999848346886677
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=454.33 Aligned_cols=191 Identities=37% Similarity=0.623 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHH-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 899999999970491231899996499--99998999998341-489983457631025731679999999861799999
Q 000795 123 KIELQKGISLFNRKPSKGIEFLINSKK--VGDSPEEVASFLKN-TTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 199 (1281)
Q Consensus 123 k~~~~~~~~~Fn~~p~~gi~~l~~~~~--i~~~p~~iA~fL~~-~~~l~k~~ig~yLg~~~~~~~~vl~~y~~~~df~~~ 199 (1281)
|....+|+.+||++||+||+||++.+. ..++|++||+||+. +++|||++||+|||+++++|.+||++|++.|||+|+
T Consensus 8 ~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g~ 87 (356)
T 1xsz_A 8 EKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQ 87 (356)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998159999999999860015899999999999845878899999999857845789999999996697999
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHH
Q ss_conf 9289999987038689846899999999999995609999899118999999998831221210047--99997878884
Q 000795 200 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIRN 277 (1281)
Q Consensus 200 ~~~~aLR~fl~~f~lpgE~q~idril~~Fa~~y~~~Np~~f~~~d~~y~la~siimLntdlhn~~~k--~kmt~~~Fi~n 277 (1281)
++|+|||.||.+||||||+|+||||||+||+|||+|||+.|.|+|+||+|+||+||||||+|||++| +|||+++||+|
T Consensus 88 ~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFikN 167 (356)
T 1xsz_A 88 SFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRN 167 (356)
T ss_dssp CHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999998284885088999999999999997399866874389999999998621003865554578989999998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 147889999978899999999761744446789981
Q 000795 278 NRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAP 313 (1281)
Q Consensus 278 ~~~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~~~ 313 (1281)
+||+|+|+|||+++|++||++|+.+||++...+..+
T Consensus 168 ~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 168 LRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp TTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 544468788989999999999970877557755686
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=452.25 Aligned_cols=192 Identities=51% Similarity=0.876 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99789999999997049123189999649999998999998341489983457631025731679999999861799999
Q 000795 120 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 199 (1281)
Q Consensus 120 ~~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~l~k~~ig~yLg~~~~~~~~vl~~y~~~~df~~~ 199 (1281)
+++|..+.+|+.+||.+|++||+||++.|+++++|++||+||+.++||||.+||+|||+++++|.+||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 92899999870386898468999999999999956099998991189999999988312212100479999787888414
Q 000795 200 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 279 (1281)
Q Consensus 200 ~~~~aLR~fl~~f~lpgE~q~idril~~Fa~~y~~~Np~~f~~~d~~y~la~siimLntdlhn~~~k~kmt~~~Fi~n~~ 279 (1281)
+||+|||.||.+||||||+|+|||||++||+|||+|||+.|.++|++|+|+||+||||||+|||++|+|||+++||+|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78899999788999999997617444467899
Q 000795 280 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 311 (1281)
Q Consensus 280 ~~~~~~d~~~~~L~~iY~~I~~~~i~~~~~~~ 311 (1281)
|+|+|.|+|+++|+.+|++|..+|+.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=45.67 Aligned_cols=310 Identities=12% Similarity=0.078 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 62009989999851112222120236999999999814786576899999999999998425466411100100023489
Q 000795 614 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFV 693 (1281)
Q Consensus 614 r~FsL~KLveIa~~Nm~Rirl~W~~iW~~l~~~f~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe 693 (1281)
|.-...-|..++...- ..+...+.+++.+...+++..++.-|+..|..++. ....+.+.. +-..++..+.
T Consensus 348 r~~a~~~L~~l~~~~~-------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~-~~~~~~~~~--~l~~il~~l~ 417 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCG-------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD-GPDKVQRTY--YVHQALPSIL 417 (861)
T ss_dssp HHHHHHHHHHHHHHHG-------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS-SSCHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHH--HHHHHHHHHH
T ss_conf 9999999999998740-------86899999999987579972699999999999985-998788899--8999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCC
Q ss_conf 995048966899999999999998002455--56818999999996303026799998999999996115---8655352
Q 000795 694 IIMQKSGSAEIRELIIRCISQMVLSRVSNV--KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF---PHITETE 768 (1281)
Q Consensus 694 ~im~~~~~~eIre~iL~cl~~li~~~~~~I--kSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l---~~l~~~~ 768 (1281)
..+ ...+..||..++.++.++....+..+ ..-...++..+-....+. +.+...+...+..++...- ....
T Consensus 418 ~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l--- 492 (861)
T 2bpt_A 418 NLM-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI--- 492 (861)
T ss_dssp HGG-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG---
T ss_pred HHC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHH---
T ss_conf 882-8995999999999999999873540487888999999999976447-28999999999999986231354246---
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2219999999999870888-845218799989999998102876335689888999998899988666778865320316
Q 000795 769 STTFTDCVKCLLTFTNSRF-NSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFW 847 (1281)
Q Consensus 769 ~~~f~dlI~cL~~F~~~~~-d~niSL~AI~~L~~~~~~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW 847 (1281)
...+..++..|........ +.++-..++..+..++...... .......++
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-----------------------------~~~~~~~l~ 543 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-----------------------------VAETSASIS 543 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-----------------------------GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH-----------------------------HHHHHHHHH
T ss_conf 899999999999998575861589999999999999976265-----------------------------699999999
Q ss_pred HHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999776420-------6----982888899999999999862999996469999875000010001124689999999
Q 000795 848 VPLLTGLSKLT-------S----DSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEP 916 (1281)
Q Consensus 848 ~pLL~~L~~l~-------~----d~r~EVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPlf~~l~~~~~~~~~~~~ 916 (1281)
-+++..|.+.. . +...++|..++++|-.++...|..+.+ +-..+ +|.+-.+....
T Consensus 544 ~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l-----~~~l~~~l~~~-------- 609 (861)
T 2bpt_A 544 TFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADML-----MGLFFRLLEKK-------- 609 (861)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHH-----HHHHHHHHHST--------
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHCCC--------
T ss_conf 99999999887532013885567779999999999999999985563478-99999-----99999997467--------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999889997566518985999998899999986887996499999999873316986243899999999998618999
Q 000795 917 DSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL 995 (1281)
Q Consensus 917 ~~~~~~~~~~e~~~W~~eT~~~aL~~l~~Lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~ia~ig~~~l~~li~~~g~~f 995 (1281)
+.+ . ..+....++..++..+. ..+.++++.++..+..++..++..+...++.++..+....|..|
T Consensus 610 --------~~~-~--v~~~~~~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 610 --------DSA-F--IEDDVFYAISALAASLG---KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp --------TGG-G--THHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred --------CCC-C--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHC
T ss_conf --------887-5--79999999999999976---60999999999999988655667899999999999998745403
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=45.40 Aligned_cols=299 Identities=10% Similarity=0.092 Sum_probs=143.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999814786576899999999999998425466411100100023489995048966899999999999998002
Q 000795 641 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 720 (1281)
Q Consensus 641 ~~l~~~f~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~iL~cl~~li~~~~ 720 (1281)
..+.+++...-.+++..+|..|+..|..++...- +.+. .+-..++..+...+ ..++..||.....++.++-...+
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--~~~~--~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMI--PYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH--HHHG--GGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH--HHHH--HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998559988999999999999986356--8899--87999999999871-79988999999999999998861
Q ss_pred CC-CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 45-55681899999999630302679999899999999611586553522219999999999870888845218799989
Q 000795 721 SN-VKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFL 799 (1281)
Q Consensus 721 ~~-IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~d~niSL~AI~~L 799 (1281)
.. ...--..++..+-....+.++.+-..|...+..++...-..+ ...+..++..|....+.... +....+++.+
T Consensus 433 ~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l----~~~l~~ll~~L~~~l~~~~~-~~~~~~~~ai 507 (852)
T 4fdd_A 433 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL----VPYLAYILDTLVFAFSKYQH-KNLLILYDAI 507 (852)
T ss_dssp HSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG----GGGHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH
T ss_conf 104789999999999999858988899999999999999736766----76799999999999988374-7999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999810287633568988899999889998866677886532031699999776420698288889999999999986
Q 000795 800 RFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKD 879 (1281)
Q Consensus 800 ~~~~~~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~r~EVR~~Al~tLF~iL~~ 879 (1281)
+.+++.+... + .+..+..-.+|.|...-....|..+++| .+++++=.+...
T Consensus 508 ~~l~~~~~~~---------------------------~-~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~ 558 (852)
T 4fdd_A 508 GTLADSVGHH---------------------------L-NKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATA 558 (852)
T ss_dssp HHHHHHHGGG---------------------------G-CCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------H-CCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHH
T ss_conf 9999974243---------------------------1-3678999988999999873330469999-999999999999
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCC-CCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 299999646999987500001000-112----468999999999998899975665189859999988999999868879
Q 000795 880 HGHLFPRQFWMGVYSHVIFPIFNG-VCD----KKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVV 954 (1281)
Q Consensus 880 ~G~~f~~~~W~~i~~~VLfPlf~~-l~~----~~~~~~~~~~~~~~~~~~~~e~~~W~~eT~~~aL~~l~~Lf~~yf~~l 954 (1281)
.|..|.+ +=..++..+ ..++.. +.. .... ... ...+ .+....++..+..+....-..+
T Consensus 559 ~g~~~~~-~~~~i~~~~-~~~l~~~l~~~~~~~~~~---------~~~-~~~d-----~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 559 LQSGFLP-YCEPVYQRC-VNLVQKTLAQAMLNNAQP---------DQY-EAPD-----KDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp HGGGGHH-HHHHHHHHH-HHHHHHHHHHHHHHHHCT---------TTS-CCCC-----THHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHCCC---------CCC-CCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7486798-899999999-999999999998753388---------666-8876-----1199999999978999874769
Q ss_pred HHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9649--9999999873316986243899999999998618999
Q 000795 955 RSQL--PGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL 995 (1281)
Q Consensus 955 ~~~l--~~~L~lL~~~i~~~~~~ia~ig~~~l~~li~~~g~~f 995 (1281)
.+++ +.++.++..|+..++..+...+..++..+....+..|
T Consensus 622 ~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 664 (852)
T 4fdd_A 622 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV 664 (852)
T ss_dssp HHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9883677189999998389984499999999999999816888
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=45.02 Aligned_cols=137 Identities=8% Similarity=0.082 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 62009989999851112222120236999999999814786576899999999999998425466411100100023489
Q 000795 614 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFV 693 (1281)
Q Consensus 614 r~FsL~KLveIa~~Nm~Rirl~W~~iW~~l~~~f~~v~~~~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe 693 (1281)
|.-++.-++.++......+.-.- .-+.+.+...-.+++..||.-|...|.+++.-+-+ + ....+-..++.++.
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l----~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~--~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYL----PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS-Q--PPDTYLKPLMTELL 448 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH-S--CTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHH
T ss_conf 99999999999863568899879----99999999871799889999999999999988611-0--47899999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99504896689999999999999800245556818999999996303026799998999999996
Q 000795 694 IIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVR 758 (1281)
Q Consensus 694 ~im~~~~~~eIre~iL~cl~~li~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~ 758 (1281)
..+. ..+..||+....++.++++..+..+..=-+.++..|...............++++..|..
T Consensus 449 ~~L~-d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 449 KRIL-DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHT-CSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 9985-898889999999999999973676676799999999999988374799999999999999
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=44.75 Aligned_cols=106 Identities=8% Similarity=-0.009 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99977642069828888999999999998629999964699998750000100011246899999999999889997566
Q 000795 850 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 929 (1281)
Q Consensus 850 LL~~L~~l~~d~r~EVR~~Al~tLF~iL~~~G~~f~~~~W~~i~~~VLfPlf~~l~~~~~~~~~~~~~~~~~~~~~~e~~ 929 (1281)
+...+.....|+..+||..|...|=.+...+ +.. ++-.++..+.. ..+.
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~--------~~~----~lp~ll~~l~~------------------~~~~- 905 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISVGN--------LPE----YLPFVLQEITS------------------QPKR- 905 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT--------HHH----HHHHHHHHHHS------------------CGGG-
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC--------HHH----HHHHHHHHHHC------------------CCHH-
T ss_conf 8999999847997789999999968775269--------998----89999998726------------------6032-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 51898599999889999998688799649999999987331698624389999999999861
Q 000795 930 TWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGEL 991 (1281)
Q Consensus 930 ~W~~eT~~~aL~~l~~Lf~~yf~~l~~~l~~~L~lL~~~i~~~~~~ia~ig~~~l~~li~~~ 991 (1281)
.++..++++.++.- .--+.+.+....++..|.+.+..+.+++......|+..++...
T Consensus 906 ---~~~~l~al~e~i~~--~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~ 962 (1230)
T 1u6g_C 906 ---QYLLLHSLKEIISS--ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962 (1230)
T ss_dssp ---HHHHHHHHHHHHHS--SCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ---HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf ---49889999999823--8766677669999999998733830446899998875665067
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=44.38 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999987331698624389999999999
Q 000795 960 GVVSILTGFIRSPIQGPASTGVAALLHLA 988 (1281)
Q Consensus 960 ~~L~lL~~~i~~~~~~ia~ig~~~l~~li 988 (1281)
++...+..+...+++.+...+..+|-.+.
T Consensus 856 ~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~ 884 (1230)
T 1u6g_C 856 ELKSVILEAFSSPSEEVKSAASYALGSIS 884 (1230)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 18999999847997789999999968775
Done!