Query 000796
Match_columns 1280
No_of_seqs 393 out of 1101
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 23:42:12 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 2E-252 3E-257 2436.0 126.8 1273 1-1280 507-1780(1780)
2 KOG0929 Guanine nucleotide exc 100.0 4E-199 8E-204 1853.6 71.7 1088 1-1272 425-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 9.4E-96 2E-100 898.3 63.9 787 106-989 508-1326(1386)
4 COG5307 SEC7 domain proteins [ 100.0 2.1E-76 4.6E-81 741.3 30.5 755 106-1011 260-1022(1024)
5 KOG0930 Guanine nucleotide exc 100.0 8.2E-55 1.8E-59 456.8 14.3 194 110-303 58-251 (395)
6 cd00171 Sec7 Sec7 domain; Doma 100.0 4.6E-52 9.9E-57 441.2 20.3 183 113-295 1-185 (185)
7 PF01369 Sec7: Sec7 domain; I 100.0 1.1E-51 2.4E-56 441.6 18.7 185 111-295 2-190 (190)
8 smart00222 Sec7 Sec7 domain. D 100.0 2.1E-51 4.6E-56 437.7 20.5 183 113-295 2-187 (187)
9 KOG0931 Predicted guanine nucl 100.0 2.7E-51 5.9E-56 454.1 13.8 196 111-306 195-396 (627)
10 KOG1846 Uncharacterized conser 100.0 1.7E-41 3.8E-46 395.3 51.2 1016 106-1181 268-1590(1777)
11 KOG1848 Uncharacterized conser 100.0 5.4E-41 1.2E-45 411.9 35.3 542 360-990 516-1133(1610)
12 KOG0932 Guanine nucleotide exc 100.0 1.6E-29 3.4E-34 287.3 13.0 154 145-298 307-460 (774)
13 PF09324 DUF1981: Domain of un 99.9 8.6E-23 1.9E-27 189.6 5.9 86 663-748 1-86 (86)
14 KOG2023 Nuclear transport rece 96.2 1.2 2.7E-05 54.9 24.7 320 627-1014 125-529 (885)
15 PLN03076 ARF guanine nucleotid 95.5 5.3 0.00011 56.4 29.9 145 841-1011 1130-1278(1780)
16 KOG2171 Karyopherin (importin) 92.4 33 0.00072 45.7 25.9 139 845-1011 115-256 (1075)
17 KOG0929 Guanine nucleotide exc 89.3 1.1E+02 0.0024 42.6 33.3 231 622-902 1063-1322(1514)
18 PF14500 MMS19_N: Dos2-interac 87.4 17 0.00037 41.5 15.9 156 693-899 95-259 (262)
19 PF01602 Adaptin_N: Adaptin N 83.0 1.3E+02 0.0029 37.4 34.7 126 606-748 54-179 (526)
20 PF01602 Adaptin_N: Adaptin N 82.1 1.4E+02 0.0031 37.1 26.7 180 582-797 188-370 (526)
21 KOG1824 TATA-binding protein-i 79.8 2.2E+02 0.0048 37.8 44.3 237 853-1159 574-815 (1233)
22 KOG1241 Karyopherin (importin) 79.7 1.9E+02 0.004 37.5 21.1 257 643-984 10-283 (859)
23 PF12348 CLASP_N: CLASP N term 79.3 99 0.0021 34.0 17.7 178 606-797 24-207 (228)
24 PF11864 DUF3384: Domain of un 78.6 64 0.0014 40.0 17.4 141 576-729 207-352 (464)
25 PF11640 TAN: Telomere-length 75.8 39 0.00086 35.3 12.3 121 855-987 11-135 (155)
26 PF03378 CAS_CSE1: CAS/CSE pro 75.5 2.1E+02 0.0046 35.3 23.6 96 633-730 70-168 (435)
27 PF12719 Cnd3: Nuclear condens 74.1 33 0.00073 39.8 12.5 66 860-949 76-144 (298)
28 PF12348 CLASP_N: CLASP N term 71.3 46 0.001 36.7 12.4 108 859-992 18-126 (228)
29 KOG1077 Vesicle coat complex A 70.0 3.3E+02 0.0071 35.1 22.1 79 647-727 273-358 (938)
30 PF12717 Cnd1: non-SMC mitotic 67.1 57 0.0012 34.8 11.5 93 647-751 1-93 (178)
31 KOG1824 TATA-binding protein-i 66.2 4.4E+02 0.0096 35.2 24.0 276 691-1009 16-305 (1233)
32 KOG2956 CLIP-associating prote 64.1 3.5E+02 0.0076 33.3 18.4 161 675-886 326-487 (516)
33 KOG1967 DNA repair/transcripti 64.0 2.2E+02 0.0048 37.6 17.0 161 696-901 143-308 (1030)
34 PF12783 Sec7_N: Guanine nucle 63.7 49 0.0011 34.9 10.1 120 584-708 8-145 (168)
35 PF02985 HEAT: HEAT repeat; I 63.0 13 0.00028 27.6 3.9 28 850-877 2-29 (31)
36 cd00020 ARM Armadillo/beta-cat 62.6 31 0.00067 33.1 7.8 108 637-748 10-118 (120)
37 PF12719 Cnd3: Nuclear condens 57.0 1.1E+02 0.0023 35.6 12.3 106 633-747 26-140 (298)
38 PF04510 DUF577: Family of unk 56.3 2.8E+02 0.0061 29.7 14.2 59 926-989 99-164 (174)
39 KOG1848 Uncharacterized conser 54.9 7.9E+02 0.017 34.4 32.6 255 605-890 858-1147(1610)
40 PF09324 DUF1981: Domain of un 53.8 13 0.00028 34.9 3.2 27 446-472 38-64 (86)
41 cd00020 ARM Armadillo/beta-cat 50.7 1.1E+02 0.0024 29.1 9.5 110 850-988 9-119 (120)
42 PF12755 Vac14_Fab1_bd: Vacuol 49.6 2.5E+02 0.0054 27.0 11.8 94 864-988 2-95 (97)
43 KOG2956 CLIP-associating prote 46.8 3.2E+02 0.007 33.6 13.7 111 849-987 288-398 (516)
44 PF12755 Vac14_Fab1_bd: Vacuol 44.2 1.5E+02 0.0031 28.6 8.8 71 678-750 26-96 (97)
45 PF12717 Cnd1: non-SMC mitotic 44.2 1.5E+02 0.0033 31.6 10.0 93 861-990 1-93 (178)
46 PF08767 CRM1_C: CRM1 C termin 44.0 3.8E+02 0.0082 31.6 14.1 99 700-799 92-197 (319)
47 cd03568 VHS_STAM VHS domain fa 42.8 1.1E+02 0.0024 31.6 8.3 81 644-746 47-129 (144)
48 PF08767 CRM1_C: CRM1 C termin 42.5 1.5E+02 0.0032 34.9 10.4 111 860-993 83-198 (319)
49 KOG4535 HEAT and armadillo rep 41.5 5.3E+02 0.011 31.9 14.2 57 946-1002 281-337 (728)
50 KOG2171 Karyopherin (importin) 39.8 1.2E+03 0.025 32.1 43.5 275 644-995 47-344 (1075)
51 PF11864 DUF3384: Domain of un 39.6 8.4E+02 0.018 30.3 24.1 201 736-1016 149-358 (464)
52 PRK09687 putative lyase; Provi 39.1 5.2E+02 0.011 29.8 14.0 92 640-751 29-121 (280)
53 KOG1248 Uncharacterized conser 38.7 1.2E+03 0.027 32.0 40.5 425 680-1269 97-542 (1176)
54 cd03569 VHS_Hrs_Vps27p VHS dom 37.8 1.6E+02 0.0035 30.4 8.6 58 644-705 51-110 (142)
55 KOG2023 Nuclear transport rece 36.1 3.6E+02 0.0079 34.5 12.2 135 605-750 147-285 (885)
56 PF12830 Nipped-B_C: Sister ch 34.6 5.2E+02 0.011 27.8 12.3 146 638-800 12-167 (187)
57 PF02985 HEAT: HEAT repeat; I 33.6 73 0.0016 23.6 3.9 27 636-662 2-28 (31)
58 PF12783 Sec7_N: Guanine nucle 31.0 6.4E+02 0.014 26.4 13.2 82 862-967 36-121 (168)
59 PLN03205 ATR interacting prote 30.8 3.9E+02 0.0085 32.0 10.8 122 576-704 316-441 (652)
60 PF13513 HEAT_EZ: HEAT-like re 30.6 84 0.0018 26.2 4.3 51 936-986 4-54 (55)
61 PF10508 Proteasom_PSMB: Prote 29.9 1.2E+03 0.026 29.3 25.4 259 647-984 51-314 (503)
62 PF13646 HEAT_2: HEAT repeats; 28.0 1.3E+02 0.0029 27.2 5.6 71 644-739 10-80 (88)
63 KOG2933 Uncharacterized conser 27.1 2.4E+02 0.0051 33.0 8.2 68 928-997 99-166 (334)
64 smart00288 VHS Domain present 25.0 2.9E+02 0.0063 28.0 7.9 58 645-706 48-108 (133)
65 PF10521 DUF2454: Protein of u 23.6 1E+03 0.022 27.4 13.0 62 842-903 113-178 (282)
66 PF02268 TFIIA_gamma_N: Transc 23.0 2.2E+02 0.0049 24.0 5.2 40 1068-1109 8-47 (49)
67 PF03378 CAS_CSE1: CAS/CSE pro 22.3 1.5E+03 0.033 27.9 20.7 223 723-1013 119-350 (435)
68 KOG0166 Karyopherin (importin) 22.1 1.7E+03 0.036 28.2 16.6 71 638-711 156-226 (514)
69 KOG1949 Uncharacterized conser 21.9 1.1E+03 0.023 30.8 12.8 82 858-964 184-266 (1005)
70 PF10508 Proteasom_PSMB: Prote 21.9 1.6E+03 0.036 28.1 21.1 69 638-711 123-191 (503)
71 KOG0392 SNF2 family DNA-depend 21.4 4.9E+02 0.011 35.9 10.4 103 847-972 76-179 (1549)
72 COG5240 SEC21 Vesicle coat com 21.4 8.1E+02 0.017 31.1 11.5 128 651-795 392-535 (898)
73 PF00790 VHS: VHS domain; Int 20.8 5.2E+02 0.011 26.4 8.8 57 645-705 53-114 (140)
74 PF08064 UME: UME (NUC010) dom 20.6 5.6E+02 0.012 25.0 8.6 55 937-993 33-87 (107)
75 PF05004 IFRD: Interferon-rela 20.4 5.9E+02 0.013 29.8 10.3 80 933-1012 57-139 (309)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.5e-252 Score=2435.96 Aligned_cols=1273 Identities=86% Similarity=1.277 Sum_probs=1098.1
Q ss_pred CchhhhhhhcCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhhhcccCCCCCCCCCCCC
Q 000796 1 MVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMA 80 (1280)
Q Consensus 1 ~v~~l~k~aqg~~~~~~~~~~~~~e~~lk~~~l~clv~~l~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1280)
|||.|+|+|||.+++..++..|+||++||++||||||+||+||++|+++++..++.......+.... +....+.+.+
T Consensus 507 lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 583 (1780)
T PLN03076 507 MVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVEN---NLEPGSLPVA 583 (1780)
T ss_pred HHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhcc---cccccccccc
Confidence 6899999999998777888899999999999999999999999999998765444322211111000 1111111111
Q ss_pred CCCCCCcccCCCCCCCCCCCCCChHHHHHHHHhHHHHHHHHHHHccCchhhHHHHHHcCCCCCCHHHHHHHHHhcCCCCh
Q 000796 81 NGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNK 160 (1280)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k 160 (1280)
+.++++...+.++.+..+...+++++++++|++|..+++|+.+||+|||+||+||+++|+++++|++||+||++++||||
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk 663 (1780)
T PLN03076 584 NGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNK 663 (1780)
T ss_pred ccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCH
Confidence 11111111112222333335678899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 000796 161 TLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVL 240 (1280)
Q Consensus 161 ~~igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~~f~~~d~~y~l 240 (1280)
++||||||+++++|++||++|++.|||+|++||+|||.||.+||||||+|+||||||+||+|||+|||+.|.|+|++|+|
T Consensus 664 ~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvL 743 (1780)
T PLN03076 664 TLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVL 743 (1780)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchhHHhhhhccccccccccc
Q 000796 241 AYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDS 320 (1280)
Q Consensus 241 ~~siimLntdlhn~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1280)
+||+||||||+|||++|+|||+++||+|+||+|+|+|+|+|||++|||+|+++||++++|+.++.+++....+++.|++.
T Consensus 744 aysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~ 823 (1780)
T PLN03076 744 AYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDS 823 (1780)
T ss_pred HHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCcccccccccccccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999876655454555566778888
Q ss_pred hhhHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhccCCCceeecccHHHHHHHHHHhHHHHHHHHhhhhccCChHHHHHHH
Q 000796 321 ILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALC 400 (1280)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~e~~r~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~ 400 (1280)
+++.+.|+++.++|+++++++++++++.+|++.+++.+.|+.++|.+|+||||+++|+|++||||++|++++|++++..|
T Consensus 824 ~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~c 903 (1780)
T PLN03076 824 ILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQC 903 (1780)
T ss_pred HHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88888888888889999999999999999887777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHhhccCCCCCccccchHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHH
Q 000796 401 LQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHL 480 (1280)
Q Consensus 401 L~gf~~~i~ia~~l~l~~~rdafl~sL~kft~L~~~~~l~~Kni~alraLl~ia~~~Gn~L~~sW~~IL~~isqle~lql 480 (1280)
|+||+.+|||||.|||+++||+||++|||||.|++|.+|++||++|+|+||+||+++||+|++||++||+|||||||||+
T Consensus 904 L~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~L 983 (1780)
T PLN03076 904 LEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHL 983 (1780)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhhhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhH
Q 000796 481 LGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNM 560 (1280)
Q Consensus 481 i~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~~i~~~~~~~~~ 560 (1280)
++.|++||..++..|+.+.+.++..++..+|...++++++..+......++++++...++..+..++++++.....++.+
T Consensus 984 i~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1063 (1780)
T PLN03076 984 LGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNM 1063 (1780)
T ss_pred hhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhh
Confidence 99999998877666655555445555666777666666654444444456677665555556677888899887777888
Q ss_pred HHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhHHHHHHHHHH
Q 000796 561 LEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFV 640 (1280)
Q Consensus 561 l~~i~s~~id~lF~~S~~L~~eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf~ 640 (1280)
+++|+++.+|+||++|++|+++||++||+|||+||++|+.++++||+|+|+||||||+|||+|||++|++||+++++||+
T Consensus 1064 l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~ 1143 (1780)
T PLN03076 1064 LEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFV 1143 (1780)
T ss_pred hhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999998788999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcH
Q 000796 641 NIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 720 (1280)
Q Consensus 641 ~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~ 720 (1280)
++|||+|..||+||+|+||||+|||++++||++|+||++||+||++||.++.+.+|||+|++|+.+||++++++||||||
T Consensus 1144 ~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWk 1223 (1780)
T PLN03076 1144 TIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 1223 (1780)
T ss_pred HhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhhc
Q 000796 721 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 800 (1280)
Q Consensus 721 ~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~ 800 (1280)
+||+||+.|+.++++.+|++||+++++|++|||+.++.++.++|.|||+||.+|++|+.++||||+||++||.|++++++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998886557899999999999999999999999999999999999998
Q ss_pred ccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC
Q 000796 801 GDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG 880 (1280)
Q Consensus 801 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G 880 (1280)
+.+........ +...+.++.....+..+...+.+.+.+..+|||||++|+++++|+|+|||++||+|||+||+.||
T Consensus 1304 ~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1304 GDLGSSSRNKD----KEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred ccccccccccc----cccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 76543211000 00000001101111112223345556678999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCC-CCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 000796 881 HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENS-PGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLR 959 (1280)
Q Consensus 881 ~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~-~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~ 959 (1280)
+.|++++|+.||++||||||+.++...++....+ +++.+.....+.+.++|++|||++||+++++||++||+.|..+|+
T Consensus 1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765533221 111111111245789999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCccccccCCcchhhhhhhhcccccC
Q 000796 960 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVE 1039 (1280)
Q Consensus 960 ~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1280)
+++++|.+||||+||+|||||++||++||.+||++|++++|++|+++|.++|+.|+|.|..................++.
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~ 1539 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAE 1539 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCchhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999997543221110000000000100
Q ss_pred CCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhcCCChhHH
Q 000796 1040 SSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLR 1119 (1280)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcvlQLllIq~~~el~~~~~~~l~~~~l~~Ll~~L~~s~~fA~~fN~~~~LR 1119 (1280)
...++...+.........+...+.++|||||+||||||++.+||++++.+||++|+.+|+++|++||+|||+||+|++||
T Consensus 1540 ~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR 1619 (1780)
T PLN03076 1540 AASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALR 1619 (1780)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 00001111111111222333345568888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCchhhHhhhHHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 000796 1120 SKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQ 1199 (1280)
Q Consensus 1120 ~~L~k~g~~~~~~~PnLlkQE~~s~~~yl~iL~~l~~d~~~~~~~~~ie~~L~~lc~~il~~y~~~~~~~~~~~~~~~~~ 1199 (1280)
++|||+|||+++++|||||||++|+++||+|||+||+|+++.+.+.++|++|+++|.+||++|+++++.+++++..++..
T Consensus 1620 ~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~~~~~~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~ 1699 (1780)
T PLN03076 1620 SKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLAKEAEVESRLVELCEEVLQFYIETSTAGQDSEDSSSQQ 1699 (1780)
T ss_pred HHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999999999999999999999999998889999999999999999999999997443333334566
Q ss_pred ccccccCCcchhhhhhhhhhHHHHHHHHHhcCChHHHHHhhhhhHHHHHHHhcccCCChhHHHHHHHHHHhhhhhhhhcc
Q 000796 1200 VRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQVALSDMLDASVGPILLRT 1279 (1280)
Q Consensus 1200 ~~~~~p~~~~~~r~~~aw~pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~L~~~~~~~~e~r~al~~~f~~rvg~~~~~~ 1279 (1280)
|+|++|+|++++||++||+||||+||+|+++||+++|++|+|.||||+|+|++||+.++|||.||+.+|+.||||+++++
T Consensus 1700 ~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~~~~~ 1779 (1780)
T PLN03076 1700 PRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPVLLQS 1779 (1780)
T ss_pred ccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhhHhcc
Confidence 89999999999999999999999999999999999999999999999999999988899999999999966999999998
Q ss_pred C
Q 000796 1280 C 1280 (1280)
Q Consensus 1280 ~ 1280 (1280)
|
T Consensus 1780 ~ 1780 (1780)
T PLN03076 1780 C 1780 (1780)
T ss_pred C
Confidence 8
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-199 Score=1853.57 Aligned_cols=1088 Identities=48% Similarity=0.763 Sum_probs=938.8
Q ss_pred CchhhhhhhcCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhhhcccCCCCCCCCCCCC
Q 000796 1 MVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMA 80 (1280)
Q Consensus 1 ~v~~l~k~aqg~~~~~~~~~~~~~e~~lk~~~l~clv~~l~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1280)
+|++|+|+|||+ ++++....|+||.++|..+++||+++++||.+|.++.+..+...++...... +.++.
T Consensus 425 ~v~~ltk~a~g~-~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~-----~~~~~----- 493 (1514)
T KOG0929|consen 425 LVNGLSKIAQGR-TGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTT-----PIENE----- 493 (1514)
T ss_pred HHhhHHHhhcCC-CccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCc-----chhhh-----
Confidence 589999999996 4789999999999999999999999999999999986655544333222110 00000
Q ss_pred CCCCCCcccCCCCCCCCCCCCCChHHHHHHHHhHHHHHHHHHHHccCchhhHHHHHHcCCCCCCHHHHHHHHHhcCCCCh
Q 000796 81 NGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNK 160 (1280)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k 160 (1280)
.+ ++ ..+...+++++++..|.+|. +++|+.+||.+|++||+||++.|+++.+|.+||+||+.+.+|||
T Consensus 494 -~~-------s~---~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~k 561 (1514)
T KOG0929|consen 494 -LN-------SD---TQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSK 561 (1514)
T ss_pred -cc-------Cc---cccccccChhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCH
Confidence 00 00 11224578899999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC-CCCChhHHHH
Q 000796 161 TLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK-VFTSADTAYV 239 (1280)
Q Consensus 161 ~~igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~-~f~~~d~~y~ 239 (1280)
+.+|+|||+++++|++|||+|||.|||++++|++|||.||+.||||||+|||||+|++||+|||+|||+ .|.|||+||+
T Consensus 562 t~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYV 641 (1514)
T KOG0929|consen 562 TILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYV 641 (1514)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhhhccCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchhHHhhhhcccccccccc
Q 000796 240 LAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLD 319 (1280)
Q Consensus 240 l~~siimLntdlhn~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1280)
||||+||||||+|||++|+|||++|||+||||||+|+|+|++||+.+||+|..+||++.++...+...+.....+..+.+
T Consensus 642 LAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~ 721 (1514)
T KOG0929|consen 642 LAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLT 721 (1514)
T ss_pred HHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999988776555555556666777
Q ss_pred chhhHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhccCCCceeecccHHHHHHHHHHhHHHHHHHHhhhhccCChHHHHHH
Q 000796 320 SILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIAL 399 (1280)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~e~~r~Mfe~~W~~iLaalS~~l~~s~D~~~~~~ 399 (1280)
+..+...+.+....++... +..+++++++..+.||.++|.+|||+||+.+|+|++||+|.+|+.++|..+...
T Consensus 722 ~~~~l~~~~r~~~~~~s~~-------~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~ 794 (1514)
T KOG0929|consen 722 GILNLRSNSRMSAIDMSAS-------QSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANL 794 (1514)
T ss_pred cccccchhhhhhHHHhhhh-------HHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccc
Confidence 6665544443332222211 334555666667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccCCCCCccccchHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHH
Q 000796 400 CLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLH 479 (1280)
Q Consensus 400 ~L~gf~~~i~ia~~l~l~~~rdafl~sL~kft~L~~~~~l~~Kni~alraLl~ia~~~Gn~L~~sW~~IL~~isqle~lq 479 (1280)
||+||+.++||+|.|+|++.||||+++|++||.++.+.+|+.||++++++++.||.++||+|.++|.+|+.|++|+|++|
T Consensus 795 cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~q 874 (1514)
T KOG0929|consen 795 CLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQ 874 (1514)
T ss_pred cccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhhhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhh
Q 000796 480 LLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLN 559 (1280)
Q Consensus 480 li~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~~i~~~~~~~~ 559 (1280)
++++|++++...+.. +. + +. ....+|+++..+.++.........++.
T Consensus 875 li~sg~~~~~~~~~~----s~-----~----~~-------------~~~~~~~~~~~~~~s~~e~~~~~~s~s------- 921 (1514)
T KOG0929|consen 875 LIGSGSPPNKLPFVV----SQ-----R----ED-------------YKKPGGSYDSSGDGSRIENVGEKSSVS------- 921 (1514)
T ss_pred HhcCCCCcccCcchh----hh-----c----hh-------------ccCCcccccccccccchhccccchhHH-------
Confidence 999999876543321 10 0 00 000123444333333222222222222
Q ss_pred HHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhHHHHHHHHH
Q 000796 560 MLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFF 639 (1280)
Q Consensus 560 ~l~~i~s~~id~lF~~S~~L~~eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf 639 (1280)
.+ .++|+||++|.+++++||++||+|||+||++|+.++++||+|+|||+|||++|||.|||++|++||.++++||
T Consensus 922 ~v-----i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F 996 (1514)
T KOG0929|consen 922 VV-----IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFF 996 (1514)
T ss_pred HH-----HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCCCCCCeeecccceeeeccccccchhhHHHHHHHhhhhh
Confidence 11 2579999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCc
Q 000796 640 VNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 719 (1280)
Q Consensus 640 ~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW 719 (1280)
+.|||++|..|+.||+|+|||++|||++++|+++|+||++||+||+++|.++.+++|||+|+||+. +|++|||
T Consensus 997 ~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGW 1069 (1514)
T KOG0929|consen 997 VSVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGW 1069 (1514)
T ss_pred hccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhh
Q 000796 720 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 799 (1280)
Q Consensus 720 ~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~ 799 (1280)
+.||+|++.||.+.+..+|..+|+++..|+++|+..+.+++.++|.||+.||.+|+++....++|++||.++|.|+.+++
T Consensus 1070 k~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~ 1149 (1514)
T KOG0929|consen 1070 KNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLA 1149 (1514)
T ss_pred hHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888666689999999999999999999999999999999999998
Q ss_pred cccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhc
Q 000796 800 EGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNH 879 (1280)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~ 879 (1280)
++ .+.+. . +.+ ...+.+.+..+|+|+|++|++++.|+|++||++|+++||+|+..|
T Consensus 1150 e~--~~~~~-----~------------~~~-----~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~ 1205 (1514)
T KOG0929|consen 1150 EG--VYNEK-----L------------KVG-----KDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEH 1205 (1514)
T ss_pred cc--cchhh-----c------------ccc-----cccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhh
Confidence 76 11110 0 000 000344578999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 000796 880 GHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLR 959 (1280)
Q Consensus 880 G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~ 959 (1280)
|+.|+.+||+.+|+ +|||||+.++...... +..+|+.|||++||+.+|+||++||+.++.+|+
T Consensus 1206 g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~----------------~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~ 1268 (1514)
T KOG0929|consen 1206 GDDFSKEFWEDVFR-ILFPIFDNVKLDEDES----------------EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLP 1268 (1514)
T ss_pred hhhccHHHHHHHHH-heeecccccCcccchh----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999998754432 233499999999999999999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCccccccCCcchhhhhhhhcccccC
Q 000796 960 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVE 1039 (1280)
Q Consensus 960 ~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1280)
+++.+|.+||+|+|+++|++|++||.+|+.+||.+|++++|+++++++.++|++|+|+++..++...+... ..
T Consensus 1269 ~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~~~~~--~~----- 1341 (1514)
T KOG0929|consen 1269 KVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMSDISS--EQ----- 1341 (1514)
T ss_pred HHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccCCCcc--cc-----
Confidence 99999999999999999999999999999999999999999999999999999999999888854433210 00
Q ss_pred CCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhcCCChhHH
Q 000796 1040 SSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLR 1119 (1280)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcvlQLllIq~~~el~~~~~~~l~~~~l~~Ll~~L~~s~~fA~~fN~~~~LR 1119 (1280)
++........+.+.....|.+ .++| .++.+||++|+.+|+++|..+|+||++||+|++||
T Consensus 1342 --------~e~~~~~~~~v~~~~~~~k~~-----------~~~~-~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR 1401 (1514)
T KOG0929|consen 1342 --------NELSQTISNIVFYPATESKED-----------TDLL-GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELR 1401 (1514)
T ss_pred --------ccccccccccccccccchHHH-----------HHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 000000001111111223332 3444 77799999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCchhhHhhhHHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHHHHHHHHHhccCCCCCCCcccccc
Q 000796 1120 SKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQ 1199 (1280)
Q Consensus 1120 ~~L~k~g~~~~~~~PnLlkQE~~s~~~yl~iL~~l~~d~~~~~~~~~ie~~L~~lc~~il~~y~~~~~~~~~~~~~~~~~ 1199 (1280)
.+||++|.++++ |||||||++|+++||.|||+||.|+++.+ ++|+++|+++|.+||++|+++..++
T Consensus 1402 ~~l~~~~~~~~~--pnLL~qE~~s~~~~l~~lf~~~~~~~~~~--~~i~~~l~~~c~~~l~~y~~~~~~~---------- 1467 (1514)
T KOG0929|consen 1402 TKLWRAGKGSQK--PNLLRQETSSLACYLDILFRLLKDDPRVS--EEIESRLVTVCSEVLKGYLSLTSET---------- 1467 (1514)
T ss_pred HHHHHhcccCCC--cchhhHHHHHHHHHHHHHHHHhccCcccc--HHHHHHHHHHHHHHHHHHHhccccc----------
Confidence 999999965554 99999999999999999999999999877 8999999999999999999998742
Q ss_pred ccccccCCcchhhhhhhhhhHHHHHHHHHhcCChHHHHHhhhhhHHHHHHHhcccCCChhHHHHHHHHHHhhh
Q 000796 1200 VRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQVALSDMLDASV 1272 (1280)
Q Consensus 1200 ~~~~~p~~~~~~r~~~aw~pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~L~~~~~~~~e~r~al~~~f~~rv 1272 (1280)
+ +|| + .. +++.|..|+|.||++||+++.++ .++++|++++.|| .||
T Consensus 1468 -----------~---~a~-------~---~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~r~~~~~~~-lr~ 1513 (1514)
T KOG0929|consen 1468 -----------H---EAW-------L---TP-SDEEFSARAPLYYALLCAMCAFD-LDPELRHLLRFFF-LRV 1513 (1514)
T ss_pred -----------h---hhh-------c---CC-cHHHHhccCchHHHHHHHHHHcC-CcHHHHHHHHHhh-hhc
Confidence 2 577 1 22 99999999999999999999999 4679999999999 666
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-96 Score=898.33 Aligned_cols=787 Identities=27% Similarity=0.448 Sum_probs=599.0
Q ss_pred HHHHHHHhHHHHHHHHHHHccCchhhHHHHHHcCCCCC--CHHHHHHHHHhcCCCChhhhhcccccCCchhHHHHHHHHh
Q 000796 106 TIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN--TPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVD 183 (1280)
Q Consensus 106 ~~~~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~--~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~ 183 (1280)
.++. +++|+++.+|+++||+||||||+||+++|+|++ +|..+|.||+++++|||++||+|||++++ .+||++|++
T Consensus 508 ~iR~-rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~ 584 (1386)
T KOG0928|consen 508 FIRS-RKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIG 584 (1386)
T ss_pred hhcc-chhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHH
Confidence 4444 338999999999999999999999999999984 89999999999999999999999999996 799999999
Q ss_pred cCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCC-CCCCChhHHHHHHHHHHHhhhccCCccccCCCCH
Q 000796 184 SFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP-KVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSA 262 (1280)
Q Consensus 184 ~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~-~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~ 262 (1280)
.|||+||++|+|||.||++||||||+|+|+|+||+||+|||++|+ ++|.++|+||+|+|||||||||+||||||+|||+
T Consensus 585 tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~ 664 (1386)
T KOG0928|consen 585 TFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTF 664 (1386)
T ss_pred hcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCH
Confidence 999999999999999999999999999999999999999999887 8999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchhHHhhhhccccccccccchhhHHHhhhhhhhhhhhhHHHH
Q 000796 263 DDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLI 342 (1280)
Q Consensus 263 ~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1280)
+||+||+||+|+|+|||++||.+||++|+.+||.|++++.+.... ....|+. ++
T Consensus 665 dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~----------~~~~W~~----------------L~ 718 (1386)
T KOG0928|consen 665 DDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEM----------FEYRWIN----------------LI 718 (1386)
T ss_pred HHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchhh----------hHHHHHH----------------HH
Confidence 999999999999999999999999999999999998887543211 0111111 11
Q ss_pred HHHHHHHHHhhccCCCceeecccHHHHHHHHHHhHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 000796 343 RHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDA 422 (1280)
Q Consensus 343 ~~~~~~~~~~~~~~~~~f~~a~~~e~~r~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~L~gf~~~i~ia~~l~l~~~rda 422 (1280)
.+.+..+..+.......+.|.||..+|+|++||+|++|+.++++.+++.|++|+++++.|++.+|+.++.|.
T Consensus 719 --------~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~dd 790 (1386)
T KOG0928|consen 719 --------SRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDD 790 (1386)
T ss_pred --------hcccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 112223334445555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCc----c------ccchHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 000796 423 FVTSLAKFTSLHSPAD----I------KQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFF 492 (1280)
Q Consensus 423 fl~sL~kft~L~~~~~----l------~~Kni~alraLl~ia~~~Gn~L~~sW~~IL~~isqle~lqli~~g~~~d~~~~ 492 (1280)
.+.+|||||.|.+|.. + ..|--.|..|++-+|+..|++++.+|+.|++|+.||.+++++...+.++..+.
T Consensus 791 li~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~ 870 (1386)
T KOG0928|consen 791 LIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNE 870 (1386)
T ss_pred HHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcC
Confidence 9999999999987652 1 34778999999999999999999999999999999999999876654443322
Q ss_pred cC-CCcchhhhhccccccccccc-cCCCCchhhhhhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhh
Q 000796 493 AF-PQSESEKSKQAKSTILPVLK-KKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMN 570 (1280)
Q Consensus 493 ~~-p~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~~i~~~~~~~~~l~~i~s~~id 570 (1280)
.. |...... .+.. ..|.-+ +++.+ -..+.++|.+ +.+....+.+|+++++....+. +||.+|.++
T Consensus 871 ~~~~~~~~~~-~~~~--~~~~~k~~~ss~------Lls~fs~~Ls-~d~e~~~~~Ptee~l~~~~~a~---~cIk~c~i~ 937 (1386)
T KOG0928|consen 871 PELLKLNKLP-VPQQ--EISINKPRKSSG------LLSRFSSYLS-GDEEEERPCPTEEELSASKKAL---ECIKECHID 937 (1386)
T ss_pred ccccccCCCC-CCcc--ccCcccccccch------HHHHHHHhcC-CcccccCCCCcHHHHhhhHHHh---hHHHhcCHH
Confidence 10 0000000 0000 000000 01111 1112223332 2333456778999998665544 566778999
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhHHHHHHHHHHhhcCCCCHHH
Q 000796 571 RIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSI 650 (1280)
Q Consensus 571 ~lF~~S~~L~~eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf~~vg~~~n~~v 650 (1280)
.+|++|+.|..+++.+++++|...+...-...++.++|++++|+.|...|.+||.+.|..+.+++-..|+..-..+.. .
T Consensus 938 ~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~-l 1016 (1386)
T KOG0928|consen 938 QIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPL-L 1016 (1386)
T ss_pred HHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCch-h
Confidence 999999999999999999999998865311125678999999999999999999999999888887777764432323 3
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCC--hHHHHHHHHHHHHHHHHcccccccc--CcHHHHHHH
Q 000796 651 AIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSN--AVEIRELIIRCVSQMVLSRVNNVKS--GWKSMFMVF 726 (1280)
Q Consensus 651 a~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~--~~eire~iL~cl~~mi~~~~~~IkS--GW~~IF~iL 726 (1280)
...|+-.+..++.|.+.+++ ..-.++++++..+....+ ....-+.+.--+.+++.++..++.+ ||+++|..|
T Consensus 1017 vek~v~gl~rv~~rll~yk~----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL 1092 (1386)
T KOG0928|consen 1017 VEKAVSGLLRVVNRLLPYKE----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLL 1092 (1386)
T ss_pred HHHHHHHHHHHHHHHhhhhh----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34455556668889988654 335678888887665433 3456777777888999998888755 999999999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCc-cccHHHHHHHHHHHHhhhcccccc
Q 000796 727 TTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNK-DISLNAIAFLRFCATKLAEGDLSA 805 (1280)
Q Consensus 727 ~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~-niSL~Ai~~L~~~~~~l~~~~~~~ 805 (1280)
..++. ++..-..+|..+...+.|-. +++ ++.|..||+|...|+.....+ .-++..+ +.++..+. .
T Consensus 1093 ~~~~~--h~~a~~~~~~~~l~~m~e~~-hl~---~~~fe~~v~~~~~fve~~~~~~~~~l~~l-------de~s~sg~-~ 1158 (1386)
T KOG0928|consen 1093 ELTAR--HPEADFLKFYRLLSKMSEAS-HLT---PDNFELYVDCGSTFVEARVGQIMRSLSLL-------DEMSSSGE-V 1158 (1386)
T ss_pred HHHhc--CCchhHHHHHHHHHHhhccc-cCC---hHHHHHHHHHHHHHHHHHHHHHHHhcchh-------hhhccccc-c
Confidence 98887 55566677777776666654 344 689999999999998654311 1112111 11111100 0
Q ss_pred cCCCchhhhcccCCCCCCCchhhhhhccC-cCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCC
Q 000796 806 SSSNKDKEISAKIPPASPRPVKELKLENG-EMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFS 884 (1280)
Q Consensus 806 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~ 884 (1280)
..++.. .. +....+.. ...+.+.....|.+|+..+.++|.|+|.+||+.||+.|.+++-.-+..+.
T Consensus 1159 ~~kw~~-~~------------~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~ 1225 (1386)
T KOG0928|consen 1159 LDKWEI-EA------------KNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLA 1225 (1386)
T ss_pred hhHHHH-HH------------hhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 001000 00 00000000 11112233569999999999999999999999999999999888899999
Q ss_pred HhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhH------HH
Q 000796 885 LPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP------LL 958 (1280)
Q Consensus 885 ~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~------~l 958 (1280)
+..|..||+.|+||+++.+.......+. ... -++.|..++.+.++++|.+++..+.. +|
T Consensus 1226 ~~~~~~Cf~~vlfpll~~l~~~l~~~~~------------~~~---~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lw 1290 (1386)
T KOG0928|consen 1226 HSYWNPCFDLVLFPLLTDLLELLSDASE------------KGN---EMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLW 1290 (1386)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhccccc------------ccc---hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875443211 111 36799999999999999999987763 46
Q ss_pred HHHHHHHHHhhccc-----chhHHHHHHHHHHHHHH
Q 000796 959 RKVLMLLVSFIKRP-----HQSLAGIGIAAFVRLMS 989 (1280)
Q Consensus 959 ~~~l~lL~~~i~q~-----~e~la~~g~~~l~~ll~ 989 (1280)
-.+++.+..||.-. .+.+-.+....++..+.
T Consensus 1291 l~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~ 1326 (1386)
T KOG0928|consen 1291 LGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLL 1326 (1386)
T ss_pred HHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhh
Confidence 67777777777653 24566666666666554
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=2.1e-76 Score=741.31 Aligned_cols=755 Identities=26% Similarity=0.373 Sum_probs=587.5
Q ss_pred HHHHHHHhHHHHHHHHHHHccCchhhHHHHHHcCCCCC-CHHHHHHHHHhcCC-CChhhhhcccccCCchhHHHHHHHHh
Q 000796 106 TIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN-TPEEIAAFLKNASD-LNKTLIGDYLGEREELPLKVMHAYVD 183 (1280)
Q Consensus 106 ~~~~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~p~~ia~fl~~~~~-l~k~~igeyLg~~~~~~~~vl~~y~~ 183 (1280)
.....|.+|..+.+++..||.+|++||..|.+.+++.. ++.++|.||..+.+ +||+.+|+|||++++.|..||++|++
T Consensus 260 ~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~ 339 (1024)
T COG5307 260 VNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFIS 339 (1024)
T ss_pred hhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34447999999999999999999999999999999974 79999999998876 99999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHHHHHhhhccCCccccCCCCH
Q 000796 184 SFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSA-DTAYVLAYSVILLNTDSHNPMVKNKMSA 262 (1280)
Q Consensus 184 ~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~~f~~~-d~~y~l~~siimLntdlhn~~~k~kmt~ 262 (1280)
.|||+|++||+|||.||+.||||||+|+|||||++||.+||+|||..|.++ |+||+||||+||||||+|||++|.|||+
T Consensus 340 ~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~ 419 (1024)
T COG5307 340 LFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTF 419 (1024)
T ss_pred hcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhccccChhhhccccH
Confidence 999999999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchhHHhhhhccccccccccchhhHHHhhhhhhhhhhhhHHHH
Q 000796 263 DDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLI 342 (1280)
Q Consensus 263 ~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1280)
+||++|++|.|+|++||++||+++|++|+++||++++++........ + .|.... .+...+
T Consensus 420 ~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~---------~------~~~~~~-----ss~~~~ 479 (1024)
T COG5307 420 EDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPE---------D------NWPSLD-----SSFTNI 479 (1024)
T ss_pred HHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhccccccccc---------c------cchhhh-----hhhhhh
Confidence 99999999999999999999999999999999999988753221100 0 010000 000000
Q ss_pred HHHHHHHHHhhccCCCceeecccHHHHHHHHHHhHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 000796 343 RHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDA 422 (1280)
Q Consensus 343 ~~~~~~~~~~~~~~~~~f~~a~~~e~~r~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~L~gf~~~i~ia~~l~l~~~rda 422 (1280)
. . ..++......+.+.+|+.+|++.+|.+++++++..+..++....+..|.+ +|+.|++..+|++
T Consensus 480 ---~-~----~~rd~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~~~ 544 (1024)
T COG5307 480 ---A-E----FGRDNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTR-------IAANFDFNDPRDA 544 (1024)
T ss_pred ---h-h----cccccccchhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccc-------hhhcceecchhHH
Confidence 0 0 01122223356778899999999999999999999999998877776666 9999999999999
Q ss_pred HHHHHHhhccCCCCCccccchHHHHHHHHHHHHhcCchhhhchHHHHHHHHHHHHHHHhcCCCCCCCccccCCCcchhhh
Q 000796 423 FVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKS 502 (1280)
Q Consensus 423 fl~sL~kft~L~~~~~l~~Kni~alraLl~ia~~~Gn~L~~sW~~IL~~isqle~lqli~~g~~~d~~~~~~p~~~~~~~ 502 (1280)
|+.+++++|.+++.. ...|+++...|..++.+++++++.+.++.|. .+. + +..-..
T Consensus 545 ~~~~~s~~t~l~~~S-----------------~~~~~~~~~~~~d~~~~is~~~~~~~i~~~~-~~q--l--~~v~~~-- 600 (1024)
T COG5307 545 FLESLSEFTTLINSS-----------------VSEGPYLFIPSEDSLLSISVLELAARIGRGF-EDQ--L--SDVKLF-- 600 (1024)
T ss_pred HHHHhhccCCccccC-----------------ccccccccCccccccchhhHHHHHHHhcccc-hhh--c--chhHHh--
Confidence 999999999987543 6789999999999999999999999998876 221 0 110000
Q ss_pred hccccccccccccCCCCchhhhhhhh-ccCCccCC--CCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccC
Q 000796 503 KQAKSTILPVLKKKGPGRIQYAAATV-MRGAYDSA--GIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKL 579 (1280)
Q Consensus 503 ~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~s~~s~--~~~~~~~~~~t~~~i~~~~~~~~~l~~i~s~~id~lF~~S~~L 579 (1280)
........+...++. ....... ....+... ..+.. ..++.. ......++. ...++++...+.+
T Consensus 601 ~~~~k~~~~~i~~s~----~~~~i~~~~~~~~~~~l~~~~~~----~~~~~~-~~~~~~~~~-----~~~~~i~~~~s~~ 666 (1024)
T COG5307 601 RLRSKSGNKEILSSS----LLSNIENKSLKLYLSSLIEDGKH----FSPSIV-KKLGSPELP-----KLNPDISSGKSKL 666 (1024)
T ss_pred HHhhccccccccchh----hhhhhhhhHhhhhhhhhcCCCcc----cccccc-ccccCcccc-----ccCcccccccccc
Confidence 000000000000000 0000000 00000000 00000 001000 000001111 1247888998999
Q ss_pred Ch-HHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000796 580 NS-EAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSL 658 (1280)
Q Consensus 580 ~~-eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf~~vg~~~n~~va~~AvdsL 658 (1280)
+. .++++++++++... + ..| .+|+.++++++||.||+.+ ..||.++...+..++++.+..+..+++++.
T Consensus 667 s~~~~~l~~~k~~~~~d---~---~~~---~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~ 736 (1024)
T COG5307 667 SVWSAVLSVFKAILSSD---L---PSP---PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSK 736 (1024)
T ss_pred cccchHHHHHHHHHhcc---C---CCC---CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhccccccccchhcccchh
Confidence 98 89999999999922 1 123 8999999999999999988 999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHH
Q 000796 659 RQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIV 738 (1280)
Q Consensus 659 rqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV 738 (1280)
+|+.++|++.+|+.++.||..|+.|+++.+.......|++..+.|..++++.+...+.+| +++|.++..+..... +
T Consensus 737 ~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~ 812 (1024)
T COG5307 737 SQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSST---L 812 (1024)
T ss_pred hhhccccCChhhhcchhHHHHHhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccch---h
Confidence 999999999999999999999999999988888889999999999999999999999999 999999986654322 5
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccC
Q 000796 739 LLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKI 818 (1280)
Q Consensus 739 ~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i 818 (1280)
...++.+.. .|. +.. ..++|.+++.+-.....+..++.+.+.++++++.....+.. +.
T Consensus 813 ~~~~s~~~~--~e~---v~s-~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----wk------------ 870 (1024)
T COG5307 813 RYILSSLSN--DEL---VLS-QENLFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVEN----WK------------ 870 (1024)
T ss_pred hhHHHHhcc--hhh---hhC-hhhHHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHH----HH------------
Confidence 555555532 122 211 13789999999999888888888999999988765544332 10
Q ss_pred CCCCCCchhhhhhccCcCCCcchhhhhHHHHHHHHhhhcC-CCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHH
Q 000796 819 PPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSF-DPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLF 897 (1280)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~-d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLf 897 (1280)
+....... +.-..+.|+++|.++.++.. -...++ |..+..+++.|...+|+.+++.-++
T Consensus 871 ----------~~~~~~~~--~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~ 930 (1024)
T COG5307 871 ----------NLSSVLSA--NSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESF 930 (1024)
T ss_pred ----------HHHHHHHh--hhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhh
Confidence 00000000 11125789999999999875 567777 9999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHH
Q 000796 898 PIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLA 977 (1280)
Q Consensus 898 Pif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la 977 (1280)
|++............ + -+++..-.|..+|...|+...+.+|..+|+.+. ++.+.+.++..|
T Consensus 931 ~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~-~~~~~~~l~~~c--------- 991 (1024)
T COG5307 931 YIKSGASGPNSDKTN------L---DNDEIELVWASTDLLAALKEFIELFNSIFEKLE-ILAGKLILLHQC--------- 991 (1024)
T ss_pred eeccccccCcccccc------c---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh---------
Confidence 999876532111100 1 123667899999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 000796 978 GIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAA 1011 (1280)
Q Consensus 978 ~~g~~~l~~ll~~~g~~f~~~~W~~i~~~l~~l~ 1011 (1280)
.+|.+++...+...|.+-.|+++-..+.++|
T Consensus 992 ---~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 1022 (1024)
T COG5307 992 ---LNNCDQLGLGAIETLEEILWNKIDVPTNELF 1022 (1024)
T ss_pred ---cCcHhhhhhhhHHHHhhhhHHHhhcccchhc
Confidence 5788888888889998899999988776655
No 5
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-55 Score=456.82 Aligned_cols=194 Identities=53% Similarity=0.894 Sum_probs=189.2
Q ss_pred HHHhHHHHHHHHHHHccCchhhHHHHHHcCCCCCCHHHHHHHHHhcCCCChhhhhcccccCCchhHHHHHHHHhcCCCCC
Q 000796 110 RRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQR 189 (1280)
Q Consensus 110 ~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~ 189 (1280)
.+++.+.+-.|-.+||.+|+|||+||+++.++..+|++||+||+..+||+|++||+|||++++||.+||++||+.+.|++
T Consensus 58 t~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~d 137 (395)
T KOG0930|consen 58 TKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTD 137 (395)
T ss_pred hHHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhcc
Confidence 45666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHHHHhhhccCCccccCCCCHHHHHHhh
Q 000796 190 MEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNN 269 (1280)
Q Consensus 190 ~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~~~ 269 (1280)
+++++|||+||.+||||||+|||||+||+||+|||-|||++|.|+|++|+|+||+|||||.||||+||+|-++|-||.||
T Consensus 138 lnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MN 217 (395)
T KOG0930|consen 138 LNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMN 217 (395)
T ss_pred chHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhCcccccCcchh
Q 000796 270 RGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLA 303 (1280)
Q Consensus 270 ~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~ 303 (1280)
||||+|.|+|+|.|..+|++|+.+++++++|+..
T Consensus 218 rgineggdlpee~LrnlyeSi~~epFkIPeddgn 251 (395)
T KOG0930|consen 218 RGINEGGDLPEELLRNLYESIKNEPFKIPEDDGN 251 (395)
T ss_pred hccccCCCCcHHHHHHHHHHhcCCCCCCCcccCC
Confidence 9999999999999999999999999999998753
No 6
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=4.6e-52 Score=441.22 Aligned_cols=183 Identities=59% Similarity=1.018 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHccCchhhHHHHHHcCCC-CCCHHHHHHHHHhcCCCChhhhhcccccCCchhHHHHHHHHhcCCCCCCC
Q 000796 113 YKLELQEGISLFNRKPKKGIEFLINAKKV-GNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRME 191 (1280)
Q Consensus 113 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~-~~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~ 191 (1280)
+|..+++|+.+||+||++||+||++.+++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 47889999999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHHHHhhhccCCccccCCCCHHHHHHhhc
Q 000796 192 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFT-SADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 270 (1280)
Q Consensus 192 ~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~~f~-~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~~~~ 270 (1280)
|++|||.||.+|+||||+|+|||||+.||+|||+|||+.+. |+|++|+|+||+||||||+|||++++|||+++||+|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCcc
Q 000796 271 GIDDGKDLPEEYLRSLFERISRNEI 295 (1280)
Q Consensus 271 ~~~~~~~~~~~~L~~iY~~I~~~~i 295 (1280)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 7
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.1e-51 Score=441.56 Aligned_cols=185 Identities=52% Similarity=0.951 Sum_probs=170.5
Q ss_pred HHhHHHHHHHHHHHccCchhhHHHHHHcCCC--CCCHHHHHHHHHhcCCCChhhhhcccccCCchhHHHHHHHHhcCCCC
Q 000796 111 RAYKLELQEGISLFNRKPKKGIEFLINAKKV--GNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQ 188 (1280)
Q Consensus 111 k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~--~~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~ 188 (1280)
|++|..+++|+.+||.+|++||+||++.|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 7889999999999999999999999999998 77999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC--CCCChhHHHHHHHHHHHhhhccCCccccCCCCHHHHH
Q 000796 189 RMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK--VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFI 266 (1280)
Q Consensus 189 ~~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~--~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi 266 (1280)
|+++++|||.||.+|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++||
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHHHHhCcc
Q 000796 267 RNNRGIDDGKDLPEEYLRSLFERISRNEI 295 (1280)
Q Consensus 267 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~i 295 (1280)
+|++|+++|+++|+++|++||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 8
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=2.1e-51 Score=437.65 Aligned_cols=183 Identities=55% Similarity=0.947 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHHccCchhhHHHHHHcCCCC-CCHHHHHHHHHhcCCCChhhhhcccccCCchhHHHHHHHHhcCCCCCCC
Q 000796 113 YKLELQEGISLFNRKPKKGIEFLINAKKVG-NTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRME 191 (1280)
Q Consensus 113 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~-~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~ 191 (1280)
+|..+.+|+.+||.+|++||+||++.|+++ ++|++||+||+++++|||++||+|||+++++|.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 578899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCCCCC--ChhHHHHHHHHHHHhhhccCCccccCCCCHHHHHHhh
Q 000796 192 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFT--SADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNN 269 (1280)
Q Consensus 192 ~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~~f~--~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~~~ 269 (1280)
|++|||.||..|+||||+|+|||||+.||+|||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++||+|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhCcc
Q 000796 270 RGIDDGKDLPEEYLRSLFERISRNEI 295 (1280)
Q Consensus 270 ~~~~~~~~~~~~~L~~iY~~I~~~~i 295 (1280)
+|+++|.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 9
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-51 Score=454.06 Aligned_cols=196 Identities=44% Similarity=0.828 Sum_probs=188.5
Q ss_pred HHhHHHHHHHHHHHccCchhhHHHHHHcCCCCCCHHHHHHHHHhcCCCChhhhhcccccC-CchhHHHHHHHHhcCCCCC
Q 000796 111 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGER-EELPLKVMHAYVDSFDFQR 189 (1280)
Q Consensus 111 k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyLg~~-~~~~~~vl~~y~~~~df~~ 189 (1280)
-.+|+....|..+||.||.|||+||++.||++++|..||+||+...||+|+|||||||+. ++||..||+++|+.|||++
T Consensus 195 t~~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfss 274 (627)
T KOG0931|consen 195 TRRKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSS 274 (627)
T ss_pred HHHHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhcccc
Confidence 345677899999999999999999999999999999999999999999999999999985 6899999999999999999
Q ss_pred CChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhhhCCC---CCCChhHHHHHHHHHHHhhhccCCcccc--CCCCHHH
Q 000796 190 MEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK---VFTSADTAYVLAYSVILLNTDSHNPMVK--NKMSADD 264 (1280)
Q Consensus 190 ~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~~~N~~---~f~~~d~~y~l~~siimLntdlhn~~~k--~kmt~~~ 264 (1280)
|.+|+|||+|...||+|||||||||++|+||.|||.|||. .|.|.|++|+|||+|||||||+|+|+|| +||+++|
T Consensus 275 melDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leD 354 (627)
T KOG0931|consen 275 MELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLED 354 (627)
T ss_pred chHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHH
Confidence 9999999999999999999999999999999999999998 5999999999999999999999999999 8999999
Q ss_pred HHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchhHHh
Q 000796 265 FIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQ 306 (1280)
Q Consensus 265 Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~ 306 (1280)
||||.||.++|.|+|++.|.+||++|++.|++-.+|+.+..+
T Consensus 355 FikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVq 396 (627)
T KOG0931|consen 355 FIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQ 396 (627)
T ss_pred HHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHH
Confidence 999999999999999999999999999999999999876543
No 10
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-41 Score=395.25 Aligned_cols=1016 Identities=17% Similarity=0.219 Sum_probs=631.4
Q ss_pred HHHHHHHhHHHHHHHHHHHccCchhh--HHHHHHcCCCCC--------------------CHHHHHHH--HHhcCCCChh
Q 000796 106 TIEQRRAYKLELQEGISLFNRKPKKG--IEFLINAKKVGN--------------------TPEEIAAF--LKNASDLNKT 161 (1280)
Q Consensus 106 ~~~~~k~~k~~~~~~~~~Fn~~p~~g--i~~l~~~~~~~~--------------------~p~~ia~f--l~~~~~l~k~ 161 (1280)
.+-..+.+-..+.+-|++.=.+|... ++-|+....+-. +-.+||+= -...+.--+.
T Consensus 268 NflsvdaltqivdqlirlmisdpSeanflealfddadLfpreddrcdalklaaeidgdgSdiSdIakdnCsladeeqlpr 347 (1777)
T KOG1846|consen 268 NFLSVDALTQIVDQLIRLMISDPSEANFLEALFDDADLFPREDDRCDALKLAAEIDGDGSDISDIAKDNCSLADEEQLPR 347 (1777)
T ss_pred CcchHHHHHHHHHHHHHHhhCChhhhhhHHHhhhhhhcCcchhhhhHHHHHHHHHhCCcchhhhhhhccccccchhhhhH
Confidence 34455666666777777777777643 444455444421 11122211 0000001123
Q ss_pred hhhcccccCC----chhHHHHHHHHhcCCCCCCChHHHHHHHhccCC--CCC-----chHHHHHHHHHHHHHHhhh----
Q 000796 162 LIGDYLGERE----ELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFR--LPG-----EAQKIDRIMEKFAERYCKC---- 226 (1280)
Q Consensus 162 ~igeyLg~~~----~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~--Lpg-----E~q~idri~~~Fa~~y~~~---- 226 (1280)
++-+.||+.. ...++.++.-|.+.|=.+ --+-|.|++... +|. =+-..|.++..||-++|+.
T Consensus 348 mlmdCiaecslpqaaLSidalKnivamldead---QhSahkFfqdlEgllpkLiadsfscedDTalnnFalkccegvsdi 424 (1777)
T KOG1846|consen 348 MLMDCIAECSLPQAALSIDALKNIVAMLDEAD---QHSAHKFFQDLEGLLPKLIADSFSCEDDTALNNFALKCCEGVSDI 424 (1777)
T ss_pred HHHHHHHhccCchHHhhHHHHHHHHHHHhhHH---HHHHHHHHHhhhhhHHHHHhhccchhhHHHHHHHHHHHhcCcccc
Confidence 4455555532 244555655554433111 113456666553 443 3568899999999999985
Q ss_pred -CCC----------CCCChhHHHHHHHHHHHhh-hcc-CCcc----cc----CCCCHHHHHHhhcCCCCCCCCcHHHHHH
Q 000796 227 -NPK----------VFTSADTAYVLAYSVILLN-TDS-HNPM----VK----NKMSADDFIRNNRGIDDGKDLPEEYLRS 285 (1280)
Q Consensus 227 -N~~----------~f~~~d~~y~l~~siimLn-tdl-hn~~----~k----~kmt~~~Fi~~~~~~~~~~~~~~~~L~~ 285 (1280)
.|+ ...|||.-|+.|---.++| -.+ |..- -| .+-|..+|++....-.-.--+.+.+.++
T Consensus 425 cspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKdFmkalqeSgldiiaapaniee 504 (1777)
T KOG1846|consen 425 CSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKDFMKALQESGLDIIAAPANIEE 504 (1777)
T ss_pred cCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHHHHHHHHhcCceeeeccccHHH
Confidence 343 2458999999998888888 222 2222 11 2567899999875443334467888999
Q ss_pred HHHHHHhCccccc-------CcchhHHhhhhccccccccccchhhHHHhhhhhhhhhhhhHHHHHH----HHHHHHHhhc
Q 000796 286 LFERISRNEIKMK-------GDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRH----MQEQFKEKAR 354 (1280)
Q Consensus 286 iY~~I~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 354 (1280)
||+.|.....-.. .|...+..+. +...+|....-. .++ ++..+|.+ .-+.++++..
T Consensus 505 ideaiLdfnmlfeagfcgshaDaskpliki---------lqdflntdagle--saa--aggcliahaaTeslealkkrid 571 (1777)
T KOG1846|consen 505 IDEAILDFNMLFEAGFCGSHADASKPLIKI---------LQDFLNTDAGLE--SAA--AGGCLIAHAATESLEALKKRID 571 (1777)
T ss_pred HHHHHHhhhhccccccccCchhccccHHHH---------HHHhhhhhHHHH--HHh--hcceeeccccccCHHHHhhhcc
Confidence 9999988665432 1211111100 000011110000 000 00111100 0111122221
Q ss_pred cCCCceeecccHHHHHHHHHHhHHHHHHHHhhhhcc---------------------------CChHHHHHHHHHHHHHH
Q 000796 355 KSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQ---------------------------SDDEVIIALCLQGFRYA 407 (1280)
Q Consensus 355 ~~~~~f~~a~~~e~~r~Mfe~~W~~iLaalS~~l~~---------------------------s~D~~~~~~~L~gf~~~ 407 (1280)
.++ -+.++.+.+...--||..+..+++.++-. ...+++...-++|++++
T Consensus 572 dSg----cVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeKekniKeRqddaeCmeedglaka 647 (1777)
T KOG1846|consen 572 DSG----CVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQDDAECMEEDGLAKA 647 (1777)
T ss_pred ccc----ceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhhcchhhhchhhHHHH
Confidence 111 23445555666566788888888777321 11235667788999999
Q ss_pred HHHHhhcCCchHHHHHHHHHHhhccCCC---------CC-----------------------ccccchHHHHHHHHHHHH
Q 000796 408 IRVTAVMSMKTHRDAFVTSLAKFTSLHS---------PA-----------------------DIKQKNIDAIKAIVTIAD 455 (1280)
Q Consensus 408 i~ia~~l~l~~~rdafl~sL~kft~L~~---------~~-----------------------~l~~Kni~alraLl~ia~ 455 (1280)
++++|..|....++..++.|+-..+-.. |. -...-++.|..+.|....
T Consensus 648 arlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehlaetlCceadLrdda 727 (1777)
T KOG1846|consen 648 ARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHLAETLCCEADLRDDA 727 (1777)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchh
Confidence 9999999999999988888876543211 10 012346788999999999
Q ss_pred hcCchhhhchHHHHHHHHHHHHHHHhc--CCCCCCCcccc--CCCcc-hhhh-----hc-cccccccccccCCCCc----
Q 000796 456 EDGNYLQEAWEHILTCVSRFEHLHLLG--EGAPPDATFFA--FPQSE-SEKS-----KQ-AKSTILPVLKKKGPGR---- 520 (1280)
Q Consensus 456 ~~Gn~L~~sW~~IL~~isqle~lqli~--~g~~~d~~~~~--~p~~~-~~~~-----~~-~~~~~~p~~~~~~~~~---- 520 (1280)
..|.+-.++|+++.+....+-.|+..- .|....+.... +|..- .+.+ -. .+++.. ...|++..-
T Consensus 728 eaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpeh-kferqgredkead 806 (1777)
T KOG1846|consen 728 EAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEH-KFERQGREDKEAD 806 (1777)
T ss_pred hhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCccc-ChhhcCccccccc
Confidence 999999999999998754444444321 11100000000 00000 0000 00 000000 000010000
Q ss_pred --hh-hhhhhhccCCc--cCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHh-cccCChHHHHHHHHHHHHh
Q 000796 521 --IQ-YAAATVMRGAY--DSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTR-SQKLNSEAIIDFVKALCKV 594 (1280)
Q Consensus 521 --~~-~~~~~~~~~s~--~s~~~~~~~~~~~t~~~i~~~~~~~~~l~~i~s~~id~lF~~-S~~L~~eAi~~fv~ALc~v 594 (1280)
.+ ...-.+.-|+. .++-.|++ .++-...+ .++ +.....+||+|+. +..|..-|+.+|.-|+.+.
T Consensus 807 keeklsaaDlsiEgalGdapdfrggs---lmSghSaa------kai-ctLiakaDRffedacdeLcLmALgdfcvaiika 876 (1777)
T KOG1846|consen 807 KEEKLSAADLSIEGALGDAPDFRGGS---LMSGHSAA------KAI-CTLIAKADRFFEDACDELCLMALGDFCVAIIKA 876 (1777)
T ss_pred ccccccHHhhhhccccCCCccccccc---ccccchHH------HHH-HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHh
Confidence 00 00000000100 00111111 11111111 111 1223568999998 6889999999999999999
Q ss_pred hHHhhhcC---------CCC--------c--eehHHHHHHH-H--hhccccccccchhHHHHHHHHHHhh-cCCCCHHHH
Q 000796 595 SMEELRSA---------SDP--------R--VFSLTKIVEI-A--HYNMNRIRLVWSSIWHVLSDFFVNI-GCSENLSIA 651 (1280)
Q Consensus 595 S~eel~s~---------~~p--------r--~FsLqKLveV-a--~~Nm~Rirl~W~~iW~~L~~hf~~v-g~~~n~~va 651 (1280)
|...+..+ .-| | ...|.||.+. . ....-|+.++-+.+|..+++||+++ +||....|+
T Consensus 877 SenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErhvS 956 (1777)
T KOG1846|consen 877 SENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERHVS 956 (1777)
T ss_pred hhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhHHH
Confidence 98777532 012 2 4668888883 2 2233499999999999999999999 899988999
Q ss_pred HHHHHHHHHHHHHhhc-hhhhhhhhhhhhhhhhHHHHHhc-CChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHh
Q 000796 652 IFAMDSLRQLSMKFLE-REELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTA 729 (1280)
Q Consensus 652 ~~AvdsLrqL~~kfLe-~eEL~~f~fQ~~fL~Pfe~im~~-~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~a 729 (1280)
..|+..+..+.++.|. ..|-++|+|.+.++.||+.+|+. +|+.|++|+++..|.++|+.+++.|.||||++|+.|.++
T Consensus 957 qiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaV 1036 (1777)
T KOG1846|consen 957 QIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAV 1036 (1777)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Confidence 9999999999888874 68999999999999999999985 689999999999999999999999999999999999998
Q ss_pred hcCCch----hHH---------HHHHHHHHHH-HhhccCcccccccccHHHHHHHHHHHHcCCC----------------
Q 000796 730 AYDDHK----NIV---------LLAFEIIEKI-IRDYFPYITETETTTFTDCVNCLIAFTNSRF---------------- 779 (1280)
Q Consensus 730 a~~~~~----~lV---------~~aF~~l~~I-~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~---------------- 779 (1280)
...+.. .++ .-+|++++-. ..|..+.+ .++...||.|+.+|.++-.
T Consensus 1037 gggnksemkaaldedysmgKghacafDVfeafLniDnipVf----anaalecimClmkflkgleevDckeigdcapapga 1112 (1777)
T KOG1846|consen 1037 GGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGA 1112 (1777)
T ss_pred cCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhH----HHHHHHHHHHHHHHHhcccccccchhcccCCCCCC
Confidence 754321 122 3578888743 34554443 5788999999999987654
Q ss_pred -CccccHHHHHHHHHHHHhhhcccccccCC-----CchhhhcccCCCCCCCchhhhhhc-------cCcCCCcchhhhhH
Q 000796 780 -NKDISLNAIAFLRFCATKLAEGDLSASSS-----NKDKEISAKIPPASPRPVKELKLE-------NGEMIDKDDHLYFW 846 (1280)
Q Consensus 780 -~~niSL~Ai~~L~~~~~~l~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~lW 846 (1280)
..+++|.|+++|++|..-++.-+ ..+.+ ........+..+.+... .++.+. ...+.+...-.++|
T Consensus 1113 pstdKOGaALdlLpncsqLiakiY-kmPhkPifhlghladLprkcldqsamd-eDgIEsphgpfpvledfdddiagiElf 1190 (1777)
T KOG1846|consen 1113 PSTDLCLAALDLLPNCSQLIAKIY-KMPHKPIFHLGHLADLPRKCLDQSAMD-EDGIESPHGPFPVLEDFDDDIAGIELF 1190 (1777)
T ss_pred CcchhhHHHHHHHHhHHHHHHHHH-cCCCchhhhhhhhhcchHHHHhhhhcc-cCCccCCCCCccccccccccchhHHHH
Confidence 13678999999999987665421 00000 00000000000000000 000000 01222333457899
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCC-CCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCc
Q 000796 847 FPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHL-FSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGE 925 (1280)
Q Consensus 847 ~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~-f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~ 925 (1280)
+.+|..+......+.+.-+..-|..+|+.|..-... +++.+--.+...+|+|.+..|..+. +
T Consensus 1191 iiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl-----------------d 1253 (1777)
T KOG1846|consen 1191 IIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL-----------------D 1253 (1777)
T ss_pred HHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh-----------------c
Confidence 999999999888888899999999999999987644 4777888889999999999998753 3
Q ss_pred chhhhHHHHH--HHHHHHHHHHHHHHH-------------HHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHh
Q 000796 926 LDQDAWLYET--CTLALQLVVDLFVKF-------------YNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 990 (1280)
Q Consensus 926 ~~~~~W~~eT--~~laL~~l~~Lf~~y-------------f~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~ 990 (1280)
.+...|+... ..+|+..-+.+...+ ...+..++.+.+.++..|...+.+.+.++|++|++..+..
T Consensus 1254 kdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvt 1333 (1777)
T KOG1846|consen 1254 KDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVT 1333 (1777)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeec
Confidence 4567786433 466766666655443 3345567888899999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCccccccCCcc----h-----hhhh----hhhccc---c-------------cCCC
Q 000796 991 AGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSED----C-----MAEI----AAKGQI---N-------------VESS 1041 (1280)
Q Consensus 991 ~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~~----~-----~~~~----~~~~~~---~-------------~~~~ 1041 (1280)
.|++|++++|+..|.++.++|.+|+.+..+++.+. . ++++ |..++. . ...+
T Consensus 1334 agpkFseemWniaccaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigdaapSsnPgaeaerqlIaAmaqlsfmkdkq 1413 (1777)
T KOG1846|consen 1334 AGPKFSEEMWNIACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDAAPSSNPGAEAERQLIAAMAQLSFMKDKQ 1413 (1777)
T ss_pred cCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccccCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999877665432 1 1111 111110 0 0111
Q ss_pred CCCCCCC---------------Cchhhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 000796 1042 GSGLPDD---------------DSENLRTQ-----HLFACIADAKCRAAVQLLLIQAVMEIYN----------------- 1084 (1280)
Q Consensus 1042 ~~~~~~~---------------~~~~~~~~-----~~~~~~~~~~~kcvlQLllIq~~~el~~----------------- 1084 (1280)
..+..+. ..+++|.. .++.+++..++||++ +|.+.+|+-
T Consensus 1414 cgpkkpeeeDhaqgcaLIielhgadkpnghtkhrlefheIisSLfsHclL----LQliadiLLeEdskgPklgaekigqt 1489 (1777)
T KOG1846|consen 1414 CGPKKPEEEDHAQGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCLL----LQLIADILLEEDSKGPKLGAEKIGQT 1489 (1777)
T ss_pred cCCCCCcchhhhhcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCCccccccC
Confidence 1221111 11223322 234457788999865 444455541
Q ss_pred ------hhccCCCHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHhhcccCCCCCCCchhhHhhhHHHHHHHHHHHhhCC
Q 000796 1085 ------MYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDR 1158 (1280)
Q Consensus 1085 ------~~~~~l~~~~l~~Ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLlkQE~~s~~~yl~iL~~l~~d~ 1158 (1280)
.|.++|+.+.+..|.++|.+||+.|++|++.+.|...|.|+-.+.+. .|||||...++.+|.+.|-+...-+
T Consensus 1490 peadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigga--ANLlkasalsfnilfhalscavLln 1567 (1777)
T KOG1846|consen 1490 PEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGGA--ANLLKASALSFNILFHALSCAVLLN 1567 (1777)
T ss_pred CCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999999999999999999998776666 9999999999999999998776644
Q ss_pred CCCCcHHhHHHHHHHHHHHHHHH
Q 000796 1159 PPTYEEADVESHLVNLCQEVLQL 1181 (1280)
Q Consensus 1159 ~~~~~~~~ie~~L~~lc~~il~~ 1181 (1280)
...-...++.+.|.+=-....+.
T Consensus 1568 qeeiTaeqvkkeLfeddakatdS 1590 (1777)
T KOG1846|consen 1568 QEEITAEQVKKELFEDDAKATDS 1590 (1777)
T ss_pred HHHHHHHHHhhhhchhhhhhhcc
Confidence 43333344445555443333333
No 11
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.4e-41 Score=411.95 Aligned_cols=542 Identities=19% Similarity=0.217 Sum_probs=386.9
Q ss_pred eeecccHHHHHHHHHHhHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhhccCCC----
Q 000796 360 YHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHS---- 435 (1280)
Q Consensus 360 f~~a~~~e~~r~Mfe~~W~~iLaalS~~l~~s~D~~~~~~~L~gf~~~i~ia~~l~l~~~rdafl~sL~kft~L~~---- 435 (1280)
+......+.++.|....|..++.+++..+.++.|+.+.+..+.++..++..||..+-+++..+++..||+|+....
T Consensus 516 l~~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs 595 (1610)
T KOG1848|consen 516 LPRQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVS 595 (1610)
T ss_pred cccceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHH
Confidence 3344556788889999999999999999999999999999999999999999999999999999999999975321
Q ss_pred -------------------------------------------------CCccccchHHHHHHHHHHHHhcCchhhhchH
Q 000796 436 -------------------------------------------------PADIKQKNIDAIKAIVTIADEDGNYLQEAWE 466 (1280)
Q Consensus 436 -------------------------------------------------~~~l~~Kni~alraLl~ia~~~Gn~L~~sW~ 466 (1280)
+..++.||+.++|+.++++..+-+.++.+|.
T Consensus 596 ~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~ 675 (1610)
T KOG1848|consen 596 RLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWS 675 (1610)
T ss_pred HHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHH
Confidence 1124679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhhhhhccCCccCCCCCCCCCCCC
Q 000796 467 HILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVV 546 (1280)
Q Consensus 467 ~IL~~isqle~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~ 546 (1280)
+++.+.+-|++.-- . .|..... ...+. .+.++..+
T Consensus 676 llm~t~~~ls~~~~-----------m-~p~qt~l----~v~t~-----------------------------~~~hp~~p 710 (1610)
T KOG1848|consen 676 LLMYTTSSLSQPAY-----------M-EPLQTLL----AVITS-----------------------------SSVHPIQP 710 (1610)
T ss_pred HHHHHHHHhcchhh-----------c-CHHHhhH----HHHhc-----------------------------CCCCCCCc
Confidence 99998654442110 0 0100000 00000 01111111
Q ss_pred CHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcC-----CCCce--ehHHHHHHHHhh
Q 000796 547 TSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSA-----SDPRV--FSLTKIVEIAHY 619 (1280)
Q Consensus 547 t~~~i~~~~~~~~~l~~i~s~~id~lF~~S~~L~~eAi~~fv~ALc~vS~eel~s~-----~~pr~--FsLqKLveVa~~ 619 (1280)
+.+-. ...+..-++.. -.+++|.+++.++..+....++||.+++.+-+... ..-|. +.++-.+-.+..
T Consensus 711 ~~~~~-~~ynd~~~lss----l~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l 785 (1610)
T KOG1848|consen 711 LTAPR-QSYNDDLLLSS----LKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLIL 785 (1610)
T ss_pred chhhH-HHHHHHHHHHH----HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHH
Confidence 11111 11122222322 34899999999999999999999999998755321 11121 223333333322
Q ss_pred ccccccccchhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhh-------hhhhhhhHHHHHhcCC
Q 000796 620 NMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNF-------QNEFMKPFVIVMRKSN 692 (1280)
Q Consensus 620 Nm~Rirl~W~~iW~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~f-------Q~~fL~Pfe~im~~~~ 692 (1280)
|--|-. .-|....+||.+.+||--.++.. -+++.++.- .-..-+.+ |-.++-..+.....++
T Consensus 786 ~e~snq----~~~~naa~~l~t~~n~vl~s~~~-~~asals~d------a~~dv~sk~ti~~es~~~~l~sl~v~~~s~~ 854 (1610)
T KOG1848|consen 786 KELSNQ----FKIINAAPELRTRANNVLASILV-DVASALSND------ASPDVYSKQTIFFESLGMLLPSLEVSDNSSR 854 (1610)
T ss_pred HHhhhH----HHHHHhHHHHHHHHHHHHHHHHh-hhhhhhhcc------cccchhccceeeHhhhHHHHHHHHHHHhcCc
Confidence 222222 23444556666655543222211 122222110 00112223 3345545555556678
Q ss_pred hHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcC---CchhHHHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 000796 693 AVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYD---DHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVN 769 (1280)
Q Consensus 693 ~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~---~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~ 769 (1280)
..|+|-.-++|+.+++++.|+.+-+||..||++|+.++.. .+.++|++||+++++|++||++.+| .+|+.+||+
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp---~sci~~lid 931 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP---TSCILDLID 931 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC---hHHHHHHHH
Confidence 8899999999999999999999999999999999977654 3789999999999999999999999 799999999
Q ss_pred HHHHHHcCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHHHH
Q 000796 770 CLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPL 849 (1280)
Q Consensus 770 cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pL 849 (1280)
++..|++|+.|+||||+||++||.+.|.+...-+...+... +... + .++.+ ....+..-++.+|+.|
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~-~~~~--~--------e~~~s--s~~~~~~l~e~lwi~l 998 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSC-AYNS--V--------EDLYS--SMKSKEILPEVLWIML 998 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhh-hhcc--h--------hhhcc--cccchhhhhhHHHHHH
Confidence 99999999999999999999999999998752111100000 0000 0 00000 0001112357999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhh
Q 000796 850 LAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQD 929 (1280)
Q Consensus 850 L~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~ 929 (1280)
|..|+++|.|+|+||||+|.||||+|+.+||+.|++..|+.|||.|++||++........ +- ++.+.++
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~---ew--------ngkeiqk 1067 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVS---EW--------NGKEIQK 1067 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchh---hh--------cchhHhh
Confidence 999999999999999999999999999999999999999999999999999987653311 11 2345569
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHh
Q 000796 930 AWLYETCTLALQLVVDLFVKFYNTVNP------LLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 990 (1280)
Q Consensus 930 ~W~~eT~~laL~~l~~Lf~~yf~~l~~------~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~ 990 (1280)
+|. ||+++++.|++++|..||..+.. .|..++.+|.+.++..+..++-.++.|+|.++.+
T Consensus 1068 qwt-et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1068 QWT-ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhh-hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 997 99999999999999999988764 4677777777778888888899999999999874
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-29 Score=287.32 Aligned_cols=154 Identities=34% Similarity=0.631 Sum_probs=149.8
Q ss_pred HHHHHHHHHhcCCCChhhhhcccccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCCCCCchHHHHHHHHHHHHHHh
Q 000796 145 PEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYC 224 (1280)
Q Consensus 145 p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~f~LpgE~q~idri~~~Fa~~y~ 224 (1280)
...+|+=|+.-+|..|..|..+||++++|..-|..+|+..|+|.|+++|.|||.||..|-|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCChhHHHHHHHHHHHhhhccCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Q 000796 225 KCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMK 298 (1280)
Q Consensus 225 ~~N~~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i~~~ 298 (1280)
+|||++|.+.|.|+.|+.+||+||||||.++|.+|||.+|||.|..|.|+|.|||.|+|..+|++|+++.+...
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewA 460 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWA 460 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977654
No 13
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.87 E-value=8.6e-23 Score=189.65 Aligned_cols=86 Identities=48% Similarity=0.925 Sum_probs=84.0
Q ss_pred HHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHH
Q 000796 663 MKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAF 742 (1280)
Q Consensus 663 ~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF 742 (1280)
||||+++||++|+||++||+||+.||.++++.+||++||+||.+|+++++++|+|||++||++|+.|+.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000796 743 EIIEKI 748 (1280)
Q Consensus 743 ~~l~~I 748 (1280)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 14
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=1.2 Score=54.94 Aligned_cols=320 Identities=19% Similarity=0.283 Sum_probs=168.7
Q ss_pred cchhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhh-hhHHHH------HhcCChHHHHHH
Q 000796 627 VWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFM-KPFVIV------MRKSNAVEIREL 699 (1280)
Q Consensus 627 ~W~~iW~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL-~Pfe~i------m~~~~~~eire~ 699 (1280)
.|+.+-..|.+.+. +++...-.=|++.|..++ |+-++ .|+.+++ +|+..+ +-+++++.||-.
T Consensus 125 ~wpelLp~L~~~L~----s~d~n~~EgA~~AL~KIc------EDsa~-~lds~~~~rpl~~mipkfl~f~~h~spkiRs~ 193 (885)
T KOG2023|consen 125 HWPELLPQLCELLD----SPDYNTCEGAFGALQKIC------EDSAQ-FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSH 193 (885)
T ss_pred cchhHHHHHHHHhc----CCcccccchhHHHHHHHH------hhhHH-HHhhhcccCchHHhHHHHHHHHhCCChhHHHH
Confidence 45554444444443 333333344666676665 22222 2333322 233221 234678999999
Q ss_pred HHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCC
Q 000796 700 IIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRF 779 (1280)
Q Consensus 700 iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~ 779 (1280)
.+.||.++|-.+.+.+--.=..-++.+-+-+.|+++.+=+.-...+-.+..-..+.+. ......|.-. -...|..
T Consensus 194 A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~----phl~~IveyM-L~~tqd~ 268 (885)
T KOG2023|consen 194 AVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV----PHLDNIVEYM-LQRTQDV 268 (885)
T ss_pred HHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc----cchHHHHHHH-HHHccCc
Confidence 9999999987777665444455556665666888887766666666555543333332 1222333322 2246777
Q ss_pred CccccHHHHHHHHHHHH-----------------hhhcccccccCCCc--hh--hhcccCCCC----CCCchh--h-hhh
Q 000796 780 NKDISLNAIAFLRFCAT-----------------KLAEGDLSASSSNK--DK--EISAKIPPA----SPRPVK--E-LKL 831 (1280)
Q Consensus 780 ~~niSL~Ai~~L~~~~~-----------------~l~~~~~~~~~~~~--~~--~~~~~i~~~----~~~~~~--~-~~~ 831 (1280)
|.+++|.|-++.-..+. -|..| ....+.+. .+ +-...+++. .|.-.+ . +..
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~-M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSG-MVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHcc-CccccccHHHhcCccccccCCchhhhccchhhhchhccCc
Confidence 88999999887543222 11111 11000000 00 000000000 000000 0 000
Q ss_pred c----cCcCC---CcchhhhhHHHHHHHHhhhcCCCcHHHHH---HHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHH
Q 000796 832 E----NGEMI---DKDDHLYFWFPLLAGLSELSFDPRPEIRK---SALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 901 (1280)
Q Consensus 832 ~----~~~~~---~~~~~~~lW~pLL~~L~~l~~d~R~eVR~---~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~ 901 (1280)
+ ..... |+++...-| ..|+ .||.+|-.++. +.++. ++||++.
T Consensus 348 ~~~~~eDdddDe~DDdD~~~dW----------------NLRkCSAAaLDVLanvf~-----------~elL~-~l~PlLk 399 (885)
T KOG2023|consen 348 EDADDEDDDDDEDDDDDAFSDW----------------NLRKCSAAALDVLANVFG-----------DELLP-ILLPLLK 399 (885)
T ss_pred cccccccccccccccccccccc----------------cHhhccHHHHHHHHHhhH-----------HHHHH-HHHHHHH
Confidence 0 00000 111111122 2444 34555544332 33443 7788887
Q ss_pred HhhhhcCCCCCCCCCCCCCCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHH----HhHh---------------------
Q 000796 902 YVRHTIDPSGENSPGQGVDGDTGELDQDAW-LYETCTLALQLVVDLFVKFY----NTVN--------------------- 955 (1280)
Q Consensus 902 ~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W-~~eT~~laL~~l~~Lf~~yf----~~l~--------------------- 955 (1280)
....+ ..| ..|..++|+..+.+==.++| ..|-
T Consensus 400 ~~L~~----------------------~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWT 457 (885)
T KOG2023|consen 400 EHLSS----------------------EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWT 457 (885)
T ss_pred HHcCc----------------------chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeee
Confidence 65431 236 35788888887765333322 1111
Q ss_pred --------------HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 000796 956 --------------PLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKAT 1014 (1280)
Q Consensus 956 --------------~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~t 1014 (1280)
..+..++.=|..++-..|...-+.||++|-.|....|+.+ -..-..|++.|..+|..-
T Consensus 458 LsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL-Vp~l~~IL~~l~~af~kY 529 (885)
T KOG2023|consen 458 LSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL-VPYLEYILDQLVFAFGKY 529 (885)
T ss_pred HhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH
Confidence 2355667777788888999999999999999999999998 458888888888877653
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.52 E-value=5.3 Score=56.43 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=96.7
Q ss_pred hhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHH-HhHHHHHHHhhhhcCCCCCCCCCCCC
Q 000796 841 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFD-SVLFPIFDYVRHTIDPSGENSPGQGV 919 (1280)
Q Consensus 841 ~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~-~VLfPif~~l~~~~~~~~~~~~~~~~ 919 (1280)
.|.++|-.+-.-+..+..++..+|+--|+..|=++-..+-.. .+.+..=|. ..|-|+-..+... .
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~f~FQkefLkPfe~im~~s-~----------- 1195 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELANYNFQNEFMKPFVIVMRKS-N----------- 1195 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhchhHHHHHHHHHHHHHHhc-C-----------
Confidence 467889888887888876766889999999876654433321 122333333 4555655545421 0
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCC---
Q 000796 920 DGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFS--- 996 (1280)
Q Consensus 920 ~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~--- 996 (1280)
.. +-+-++++.+..+...+.+.+..=|+-++.+|..-....++.+.+.|-++++.++...-+.+.
T Consensus 1196 -----~~-------eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~ 1263 (1780)
T PLN03076 1196 -----AV-------EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE 1263 (1780)
T ss_pred -----ch-------HHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 11 334456777777777777888888999999999888888899999999998877765444343
Q ss_pred HHHHHHHHHHHHHHH
Q 000796 997 DEKWLEVAESLKEAA 1011 (1280)
Q Consensus 997 ~~~W~~i~~~l~~l~ 1011 (1280)
.+.-...++++.+..
T Consensus 1264 ~~~F~DlV~cL~~Fa 1278 (1780)
T PLN03076 1264 TTTFTDCVNCLIAFT 1278 (1780)
T ss_pred hhHHHHHHHHHHHHH
Confidence 355566666666544
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=33 Score=45.70 Aligned_cols=139 Identities=20% Similarity=0.251 Sum_probs=99.7
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCC
Q 000796 845 FWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTG 924 (1280)
Q Consensus 845 lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~ 924 (1280)
-|=-||.-|-..++++.+..|-.|+-+|+.+....|..+.+.. ..+.|+|..-...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~------~~l~~lf~q~~~d------------------ 170 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL------DDLLRLFSQTMTD------------------ 170 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH------HHHHHHHHHhccC------------------
Confidence 4888999999999999999999999999999999999998742 2345777653221
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 000796 925 ELDQDAWLYETCTLALQLVVDLF---VKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWL 1001 (1280)
Q Consensus 925 ~~~~~~W~~eT~~laL~~l~~Lf---~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~~~W~ 1001 (1280)
.... +.-+.++|+..++... +.-.+.+..+++.++..+..+|+.+++.-|...-.+|-.|+...++-| ..+-.
T Consensus 171 -~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l-~~~l~ 246 (1075)
T KOG2171|consen 171 -PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL-RPHLS 246 (1075)
T ss_pred -Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-HHHHH
Confidence 1111 4456677776666554 233445566899999999999999999888888888888877666655 44555
Q ss_pred HHHHHHHHHH
Q 000796 1002 EVAESLKEAA 1011 (1280)
Q Consensus 1002 ~i~~~l~~l~ 1011 (1280)
.|+..-..++
T Consensus 247 ~ii~~~l~Ia 256 (1075)
T KOG2171|consen 247 QIIQFSLEIA 256 (1075)
T ss_pred HHHHHHHHHh
Confidence 5554444433
No 17
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.28 E-value=1.1e+02 Score=42.58 Aligned_cols=231 Identities=15% Similarity=0.302 Sum_probs=122.1
Q ss_pred ccccccchhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhch---hhhhhhhhhhhhhhhHHHHHhcCC-----h
Q 000796 622 NRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLER---EELANYNFQNEFMKPFVIVMRKSN-----A 693 (1280)
Q Consensus 622 ~Rirl~W~~iW~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~---eEL~~f~fQ~~fL~Pfe~im~~~~-----~ 693 (1280)
+.++..|..|..++ ..++-..+..+...+.+.+-++.....+. .|.. .| .|-++.|+..+.+.. .
T Consensus 1063 ~nikSGWk~if~i~----~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~--sf-~d~v~cl~~F~~~~~~~~~s~ 1135 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKIF----TTAASDSSKNIVELAFETVSKILQELFENVFPQEMD--SF-KDCVKCLEEFTKNLGFPDDSL 1135 (1514)
T ss_pred hhhhhhhhHHHHHH----HHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH--HH-HHHHHHHHHHHHhcCCCccch
Confidence 46777777665554 45555556677666666655444322221 1111 12 244566666555322 1
Q ss_pred HHHHHHHHHHHHHHHHc-cccc-----------cccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCccccccc
Q 000796 694 VEIRELIIRCVSQMVLS-RVNN-----------VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETET 761 (1280)
Q Consensus 694 ~eire~iL~cl~~mi~~-~~~~-----------IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~ 761 (1280)
..| +++.-|.....+. ..+. -..||.+++..++.+..+....+-..+-+.+--|+.+|=+.+. .
T Consensus 1136 ~aI-~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~---~ 1211 (1514)
T KOG0929|consen 1136 NAI-RFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFS---K 1211 (1514)
T ss_pred HHH-HHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhcc---H
Confidence 222 2344555555554 2222 3369999999999887765666666777777777777644333 1
Q ss_pred ccHHHHHH-HHHHHHcCCCCcccc-------HHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhcc
Q 000796 762 TTFTDCVN-CLIAFTNSRFNKDIS-------LNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLEN 833 (1280)
Q Consensus 762 ~~f~dlI~-cL~~F~~~~~~~niS-------L~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 833 (1280)
.--.++.. |+.=|..-+.+-+.+ -+.+.-|+.+.+-..
T Consensus 1212 ~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~---------------------------------- 1257 (1514)
T KOG0929|consen 1212 EFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFT---------------------------------- 1257 (1514)
T ss_pred HHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 11122211 122222211111111 111111111111000
Q ss_pred CcCCCcchhhhhHHH-HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHH
Q 000796 834 GEMIDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDY 902 (1280)
Q Consensus 834 ~~~~~~~~~~~lW~p-LL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~ 902 (1280)
.+- .....-+| +|.-|..++..+...+-...+..|.+.+...|..|+.+.|+.+++. +.-+|+.
T Consensus 1258 -~~~---~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~-~~e~~~~ 1322 (1514)
T KOG0929|consen 1258 -QFF---KQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNC-ILEAFKT 1322 (1514)
T ss_pred -HHH---HHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHH-HHHHHHh
Confidence 000 00112222 4444556666677788888999999999999999999999999984 4466653
No 18
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.36 E-value=17 Score=41.53 Aligned_cols=156 Identities=19% Similarity=0.330 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHHcccccccc-CcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 000796 693 AVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL 771 (1280)
Q Consensus 693 ~~eire~iL~cl~~mi~~~~~~IkS-GW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL 771 (1280)
....|-.+.+-+..+++++...+++ |=.-|.+++..+..+++|+-+..+|+.+..|+..|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 4567888999999999888877753 667888999999999999999999999999988763 22 2334444433
Q ss_pred HHH-----HcCCCCc-cccHHHHH-HHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhh
Q 000796 772 IAF-----TNSRFNK-DISLNAIA-FLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLY 844 (1280)
Q Consensus 772 ~~F-----~~~~~~~-niSL~Ai~-~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1280)
..| .-.+.|+ .|+-.-+. -|+.| +........
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~c-----------------------------------------l~s~~~fa~ 207 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNC-----------------------------------------LSSTPLFAP 207 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHH-----------------------------------------hcCcHhhHH
Confidence 332 2222222 12221111 01111 111111234
Q ss_pred hHHHHH-HHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHH
Q 000796 845 FWFPLL-AGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPI 899 (1280)
Q Consensus 845 lW~pLL-~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPi 899 (1280)
+-+|+| ..|. .+ -+.|+.-+++||-.++..||..==.+.|..+++.+=+-+
T Consensus 208 ~~~p~LleKL~---s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Ei 259 (262)
T PF14500_consen 208 FAFPLLLEKLD---ST-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEI 259 (262)
T ss_pred HHHHHHHHHHc---CC-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 456644 3443 22 345999999999999999996544567777776554433
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=83.01 E-value=1.3e+02 Score=37.42 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=87.6
Q ss_pred ceehHHHHHHHHhhccccccccchhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHH
Q 000796 606 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 685 (1280)
Q Consensus 606 r~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe 685 (1280)
.-+.+.||+-++...+. -..+...-.+.+.+.+--.|+|+.++-.|+..|-.++ -.|+ -..++.+..
T Consensus 54 ~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~-----~~~l~~~v~ 120 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEM-----AEPLIPDVI 120 (526)
T ss_dssp SSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccch-----hhHHHHHHH
Confidence 45677777777643322 2334566667778877777889988888877776554 2222 223444445
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 000796 686 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKI 748 (1280)
Q Consensus 686 ~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I 748 (1280)
.++. ++++-||...+-|+.++.....+.+..+| +..+.....|+++.++..|...+..|
T Consensus 121 ~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 121 KLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 5444 56779999999999999999888776664 56666666788888998898888877
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=82.11 E-value=1.4e+02 Score=37.15 Aligned_cols=180 Identities=19% Similarity=0.286 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhcccccccc--c-hhHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000796 582 EAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLV--W-SSIWHVLSDFFVNIGCSENLSIAIFAMDSL 658 (1280)
Q Consensus 582 eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~--W-~~iW~~L~~hf~~vg~~~n~~va~~AvdsL 658 (1280)
..+..+++.|+++- ..|.-|...+++.+... ..+.... . ..+=+.+.+.+. +.+..|.+.|+..+
T Consensus 188 ~~~~~~~~~L~~~l-------~~~~~~~q~~il~~l~~-~~~~~~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 188 SLIPKLIRILCQLL-------SDPDPWLQIKILRLLRR-YAPMEPEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHHHHHHHHHH-------TCCSHHHHHHHHHHHTT-STSSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcc-------cccchHHHHHHHHHHHh-cccCChhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHH
Confidence 44566667777653 13444555555555431 1111000 0 122233333333 55677777776655
Q ss_pred HHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHH
Q 000796 659 RQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIV 738 (1280)
Q Consensus 659 rqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV 738 (1280)
-.+. +..+ .-..+..|+..++. +.+.++|-.+++++.++.......+. ....++..+. .++++.+.
T Consensus 256 ~~l~----~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir 321 (526)
T PF01602_consen 256 IKLS----PSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIR 321 (526)
T ss_dssp HHHS----SSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHH
T ss_pred HHhh----cchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHH
Confidence 4322 2222 23445667777665 77889999999999999988756666 4444433332 46678899
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHh
Q 000796 739 LLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 797 (1280)
Q Consensus 739 ~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~ 797 (1280)
..+.+.+..++++ .++...+..|..|+....+.++.-.++..+..++.+
T Consensus 322 ~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 322 KKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp HHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 9999999877753 477888999999985554556666666666555543
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=79.76 E-value=2.2e+02 Score=37.78 Aligned_cols=237 Identities=15% Similarity=0.141 Sum_probs=140.3
Q ss_pred Hhhh-cCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhH
Q 000796 853 LSEL-SFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAW 931 (1280)
Q Consensus 853 L~~l-~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W 931 (1280)
+.++ ..|.+.|||-+||..+=.++..+|+.++.+ ...+|--+.+.++.
T Consensus 574 l~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e-----L~~~L~il~eRl~n-------------------------- 622 (1233)
T KOG1824|consen 574 LQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE-----LPRTLPILLERLGN-------------------------- 622 (1233)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHHhc--------------------------
Confidence 3344 368899999999999999999999776543 22233233344432
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 000796 932 LYETCTLALQLVVDLFVKFYN-TVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEA 1010 (1280)
Q Consensus 932 ~~eT~~laL~~l~~Lf~~yf~-~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~~~W~~i~~~l~~l 1010 (1280)
.-|+.-|.+.++.++..=.+ ++.+.+.+++..|..|.++.+..+.-....++..|+...+..+..+.-+.++..+-.+
T Consensus 623 -EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~L 701 (1233)
T KOG1824|consen 623 -EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPL 701 (1233)
T ss_pred -hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhh
Confidence 14677788888888776544 3567899999999999999999888888889999999999999877777666655443
Q ss_pred HHhcCccccccCCcchhhhhhhhcccccCCCCCCCCCCCchhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000796 1011 AKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFAC--IADAKCRAAVQLLLIQAVMEIYNMYRP 1088 (1280)
Q Consensus 1011 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~kcvlQLllIq~~~el~~~~~~ 1088 (1280)
...|--+.. +.++.+. ....+--|++ .-.=..+++|.+..+.
T Consensus 702 isesdlhvt-----------------------------------~~a~~~L~tl~~~~ps~l~-~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 702 ISESDLHVT-----------------------------------QLAVAFLTTLAIIQPSSLL-KISNPILDEIIRLLRS 745 (1233)
T ss_pred hhHHHHHHH-----------------------------------HHHHHHHHHHHhcccHHHH-HHhhhhHHHHHHHhhC
Confidence 332221100 0011000 0000001110 1112234555555543
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHhhcccCCCCCCCchhhHhhhHHHHHHHHHHHhhCCC
Q 000796 1089 C-LSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRP 1159 (1280)
Q Consensus 1089 ~-l~~~~l~~Ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~~PnLlkQE~~s~~~yl~iL~~l~~d~~ 1159 (1280)
. |....+..++..+...+ +.+.-+-++..-..+.-+.. .++.--.|-||--.|.|-+...|-+.+-+..
T Consensus 746 pllqg~al~~~l~~f~alV-~t~~~~l~y~~l~s~lt~PV-~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s 815 (1233)
T KOG1824|consen 746 PLLQGGALSALLLFFQALV-ITKEPDLDYISLLSLLTAPV-YEQVTDGLHKQAYYSIAKCVAALTCACPQKS 815 (1233)
T ss_pred ccccchHHHHHHHHHHHHH-hcCCCCccHHHHHHHHcCCc-ccccccchhHHHHHHHHHHHHHHHHhccccc
Confidence 3 34444444444444433 33322222222222222222 2333346889999999999999988877443
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.71 E-value=1.9e+02 Score=37.50 Aligned_cols=257 Identities=14% Similarity=0.178 Sum_probs=145.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhc-CChHHHHHHHHHHHHHHHHcccccccc----
Q 000796 643 GCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVKS---- 717 (1280)
Q Consensus 643 g~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~-~~~~eire~iL~cl~~mi~~~~~~IkS---- 717 (1280)
.-+++..++..|-+.|.+++. +.++ .|+.-+..++.+ ++..++|-..==.|++-+.++....+-
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~-----~nf~------~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQS-----QNFP------QFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHh-----ccHH------HHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 346778888888888877662 1111 233334333332 233334433323344444444333322
Q ss_pred CcHHH--------HHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCc---cccHH
Q 000796 718 GWKSM--------FMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNK---DISLN 786 (1280)
Q Consensus 718 GW~~I--------F~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~---niSL~ 786 (1280)
-|--+ =+.+..+-....+..-..|=+++-.|..=- || .+...++|..|..-+.+.... .-+|.
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~sle 152 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLE 152 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHH
Confidence 23211 111122222344555667777887776533 44 678999999999887766544 35677
Q ss_pred HHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHHHHHHHHhhhcCCCcHHHHH
Q 000796 787 AIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRK 866 (1280)
Q Consensus 787 Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~ 866 (1280)
||+|+ |-+-..+ .+. +.....-+-+..|..+ ..+...||-
T Consensus 153 alGyi--ce~i~pe-vl~-----------------------------------~~sN~iLtaIv~gmrk--~e~s~~vRL 192 (859)
T KOG1241|consen 153 ALGYI--CEDIDPE-VLE-----------------------------------QQSNDILTAIVQGMRK--EETSAAVRL 192 (859)
T ss_pred HHHHH--HccCCHH-HHH-----------------------------------HHHhHHHHHHHhhccc--cCCchhHHH
Confidence 77776 2111000 000 0011122222222221 245678999
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 000796 867 SALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDL 946 (1280)
Q Consensus 867 ~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~L 946 (1280)
.|+..|.+.|.--+..|..+.=..++-+| +-..++ .+| .+-++-|+..++++
T Consensus 193 aa~~aL~nsLef~~~nF~~E~ern~iMqv-------vcEatq----------------~~d-----~~i~~aa~~ClvkI 244 (859)
T KOG1241|consen 193 AALNALYNSLEFTKANFNNEMERNYIMQV-------VCEATQ----------------SPD-----EEIQVAAFQCLVKI 244 (859)
T ss_pred HHHHHHHHHHHHHHHhhccHhhhceeeee-------eeeccc----------------CCc-----HHHHHHHHHHHHHH
Confidence 99999999999777777655432222211 211111 122 25568899999999
Q ss_pred HHHHHHhHhH-HHHHHHHHHHHhhcccchhHHHHHHHHH
Q 000796 947 FVKFYNTVNP-LLRKVLMLLVSFIKRPHQSLAGIGIAAF 984 (1280)
Q Consensus 947 f~~yf~~l~~-~l~~~l~lL~~~i~q~~e~la~~g~~~l 984 (1280)
..-||+.+.+ |...++.+-..-|..+||.+|--|++-+
T Consensus 245 m~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFW 283 (859)
T KOG1241|consen 245 MSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFW 283 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999997 5556899999999999999887666654
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.31 E-value=99 Score=34.01 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=98.1
Q ss_pred ceehHHHHHHHHhhccccccccchhHHHHHH---HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhh
Q 000796 606 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLS---DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMK 682 (1280)
Q Consensus 606 r~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~---~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~ 682 (1280)
|.=.|++|-.+...| ........+++.+. .-+.......+..|+..|+..+..++..+-.. +..+ -..++.
T Consensus 24 r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~--~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEPY--ADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHH--HHHHHH
Confidence 334566677777666 11222344555555 33333333345678888988888887443221 1111 133443
Q ss_pred hHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhcc---Cccccc
Q 000796 683 PFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYF---PYITET 759 (1280)
Q Consensus 683 Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l---~~l~~~ 759 (1280)
++..... .....|++.+.+|+..|++... .+=+.++.++..+..++++.+-..+.+.+..++..+- ..+..
T Consensus 98 ~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~- 171 (228)
T PF12348_consen 98 PLLKKLG-DSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK- 171 (228)
T ss_dssp HHHHGGG----HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG---
T ss_pred HHHHHHc-cccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-
Confidence 3333222 3456799999999999998765 1225668999998998898888888888888887764 22221
Q ss_pred ccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHh
Q 000796 760 ETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 797 (1280)
Q Consensus 760 ~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~ 797 (1280)
...+..++.++..+.... +.++--.|-..+|.....
T Consensus 172 -~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 -SAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHH
Confidence 123577888888876543 456666666666655443
No 24
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.59 E-value=64 Score=40.04 Aligned_cols=141 Identities=15% Similarity=0.204 Sum_probs=73.0
Q ss_pred cccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhHHHHHHHHH--HhhcCCCCHHHHHH
Q 000796 576 SQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFF--VNIGCSENLSIAIF 653 (1280)
Q Consensus 576 S~~L~~eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf--~~vg~~~n~~va~~ 653 (1280)
...+|.+++..+|..||..-.-. .+.+-.==+..|+=|-...-.-+ ..|.+.+ ....-.++..+..=
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~----------~l~~~~w~~m~nL~~S~~g~~~i-~~L~~iL~~~~~~~~~~~~~lRG 275 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV----------SLCKPSWRTMRNLLKSHLGHSAI-RTLCDILRSPDPQNKRDINVLRG 275 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc----------ccchhHHHHHHHHHcCccHHHHH-HHHHHHHcccCccccccHHHHhh
Confidence 57899999999999999762110 11111111222222211111111 2222333 11112235566667
Q ss_pred HHHHHHHHHHHhhchhhhhhhhhh-hhhhhhHHHHHhcCChHHHHHHHHHHHHHHH-Hcccccc-ccCcHHHHHHHHHh
Q 000796 654 AMDSLRQLSMKFLEREELANYNFQ-NEFMKPFVIVMRKSNAVEIRELIIRCVSQMV-LSRVNNV-KSGWKSMFMVFTTA 729 (1280)
Q Consensus 654 AvdsLrqL~~kfLe~eEL~~f~fQ-~~fL~Pfe~im~~~~~~eire~iL~cl~~mi-~~~~~~I-kSGW~~IF~iL~~a 729 (1280)
||..|+.+..+.-+ +..+.-.|- .-+|..|...+..... -|---|+.++..++ ...+..+ ...|..+++++..+
T Consensus 276 Av~~l~~ll~~~~~-~~~~~l~~~~~~vl~sl~~al~~~~~-~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~ 352 (464)
T PF11864_consen 276 AVFFLRMLLWGSGE-QGYPSLPFSPSSVLPSLLNALKSNSP-RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEI 352 (464)
T ss_pred HHHHHHHHHhcccc-CCcceecccHHHHHHHHHHHHhCCCC-eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHH
Confidence 88888776544411 222222222 1355667776664332 23334677788888 6666664 46999999999864
No 25
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=75.78 E-value=39 Score=35.28 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=74.3
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhcC--CCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCc-chhhhH
Q 000796 855 ELSFDPRPEIRKSALQVLFETLRNHG--HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGE-LDQDAW 931 (1280)
Q Consensus 855 ~l~~d~R~eVR~~Al~tLF~iL~~~G--~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~-~~~~~W 931 (1280)
......+.-=|+.|++.|=+++.... ..++...|..+|. .||..+..=..........+. +.. ...+ =
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~-------s~~~~~~~-R 81 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSA-------STATTAES-R 81 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCccc-------chHHHHHH-H
Confidence 33445667789999999999998765 8899999999998 566776654433211100000 001 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHH
Q 000796 932 LYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPH-QSLAGIGIAAFVRL 987 (1280)
Q Consensus 932 ~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~-e~la~~g~~~l~~l 987 (1280)
+ ++|.-+++.++......+.... +..+++.+...+..++ +-+.-+|..+.+.|
T Consensus 82 L-~~~a~~lR~~ve~~~~~~k~kt--~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 82 L-SSCASALRLFVEKSNSRLKRKT--VKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred H-HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 4 6778888888877766554333 4456666666666666 44555665555444
No 26
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=75.51 E-value=2.1e+02 Score=35.28 Aligned_cols=96 Identities=16% Similarity=0.348 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhhchhhh-hhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHc
Q 000796 633 HVLSDFFVNIGCSE-NLSIAIFAMDSLRQLSMKFLEREEL-ANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 710 (1280)
Q Consensus 633 ~~L~~hf~~vg~~~-n~~va~~AvdsLrqL~~kfLe~eEL-~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~ 710 (1280)
.+|...+..++-++ |+...-|..+++--| .|+...... .--.|...++-||..|+.+. -.|.-.-|.+-+.+|++.
T Consensus 70 ~~L~~il~~v~kNPsnP~FnHylFEsi~~l-ir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 70 QHLTAILKEVSKNPSNPRFNHYLFESIGAL-IRFVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHTS---HHHHHHHHHHHHHH-HHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 44555555555544 677777888888744 455432211 11246677888899888753 235556678888999998
Q ss_pred cc-cccccCcHHHHHHHHHhh
Q 000796 711 RV-NNVKSGWKSMFMVFTTAA 730 (1280)
Q Consensus 711 ~~-~~IkSGW~~IF~iL~~aa 730 (1280)
+. ..+-.-...+|..|-...
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGG
T ss_pred CCCCCCcHHHHHHHHHHcCcc
Confidence 87 555555666666665443
No 27
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=74.13 E-value=33 Score=39.81 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHHHHHHhcCC-CCCHhHH--HHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 000796 860 PRPEIRKSALQVLFETLRNHGH-LFSLPLW--ERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETC 936 (1280)
Q Consensus 860 ~R~eVR~~Al~tLF~iL~~~G~-~f~~~~W--~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~ 936 (1280)
...+||..|++.+|+++..||. .|+...+ ......-+..+|-..... . ..+..
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------------------~-----~~~~~ 131 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-------------------E-----NPELQ 131 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-------------------C-----CHHHH
Confidence 3889999999999999999994 4554444 122222333444433321 0 12466
Q ss_pred HHHHHHHHHHHHH
Q 000796 937 TLALQLVVDLFVK 949 (1280)
Q Consensus 937 ~laL~~l~~Lf~~ 949 (1280)
..|..|+++|+..
T Consensus 132 ~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 132 AIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHhc
Confidence 7889999998754
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=71.31 E-value=46 Score=36.68 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhcC-CCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 000796 859 DPRPEIRKSALQVLFETLRNHG-HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCT 937 (1280)
Q Consensus 859 d~R~eVR~~Al~tLF~iL~~~G-~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~ 937 (1280)
+..=+.|..||+.|-+++..+. ..+.+.+ -.+++.++-++...+... . +.-..
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~d~---------------------R----s~v~~ 71 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDF-VECLRQLLDAIIKQLSDL---------------------R----SKVSK 71 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHH-HHHHH---HHHHH-S-HH----------------------------HHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHH-HHHHHHhHHHHHHHHhhh---------------------H----HHHHH
Confidence 4445889999999999999772 3333333 333444444444444221 1 12235
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcC
Q 000796 938 LALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 992 (1280)
Q Consensus 938 laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g 992 (1280)
.|+..+.+++.+.=..+.++.+.++..|+.++...+..++..+..||..++...+
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence 5666666776666666777888999999999999999999999999988887655
No 29
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.98 E-value=3.3e+02 Score=35.11 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhhhhhhhhHHHH---HhcCChHHHHHHHHHHHHHHHHcccccccc-Cc
Q 000796 647 NLSIAIFAMDSLRQLSMKFLE---REELANYNFQNEFMKPFVIV---MRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GW 719 (1280)
Q Consensus 647 n~~va~~AvdsLrqL~~kfLe---~eEL~~f~fQ~~fL~Pfe~i---m~~~~~~eire~iL~cl~~mi~~~~~~IkS-GW 719 (1280)
+...+..-.+.|..+.+|.-+ .....+-+-++.+| ||.| +....+++.-...+.-+.+++..+-.|||- +-
T Consensus 273 D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVL--FeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL 350 (938)
T KOG1077|consen 273 DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVL--FEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL 350 (938)
T ss_pred CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 455666566667666655442 22334444556666 5543 444556666666666677888888888875 66
Q ss_pred HHHHHHHH
Q 000796 720 KSMFMVFT 727 (1280)
Q Consensus 720 ~~IF~iL~ 727 (1280)
.++-.+++
T Consensus 351 Esm~~L~s 358 (938)
T KOG1077|consen 351 ESMCKLAS 358 (938)
T ss_pred HHHHHHHh
Confidence 66555554
No 30
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.10 E-value=57 Score=34.83 Aligned_cols=93 Identities=16% Similarity=0.258 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHH
Q 000796 647 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 726 (1280)
Q Consensus 647 n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL 726 (1280)
|+.||.-|+-++.+|+.+|-..=| .+ -|...-+-+.+++.||...+.|+.+++....-..+. ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~--~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG--QLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh--hhhHHHH
Confidence 467888899999999977743222 11 122222334678999999999999999764433332 1123444
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHhh
Q 000796 727 TTAAYDDHKNIVLLAFEIIEKIIRD 751 (1280)
Q Consensus 727 ~~aa~~~~~~lV~~aF~~l~~I~~d 751 (1280)
. +-.|+++.+...|=..+..+...
T Consensus 70 ~-~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 K-LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHh
Confidence 4 44788999988888888777665
No 31
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=66.21 E-value=4.4e+02 Score=35.20 Aligned_cols=276 Identities=11% Similarity=0.102 Sum_probs=140.3
Q ss_pred CChHHHHHHHHHHHHHHHHcccccccc-CcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 000796 691 SNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVN 769 (1280)
Q Consensus 691 ~~~~eire~iL~cl~~mi~~~~~~IkS-GW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~ 769 (1280)
+++.|+|=|...-+..=++.-.-++.- .-+-+..++-..-.|.+.++-..|-.|+-.+++. ++ .+.....|+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK----vk---e~~le~~ve 88 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK----VK---EDQLETIVE 88 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh----ch---HHHHHHHHH
Confidence 344555555555555444444333331 3333344444445577888899999999987743 44 356677777
Q ss_pred HHHHHHcCCCCccccHHHHHHHHHHHHhhhc--ccccccC--CCchhhhcccCCCCCCCch-h----hhhhcc-CcCCCc
Q 000796 770 CLIAFTNSRFNKDISLNAIAFLRFCATKLAE--GDLSASS--SNKDKEISAKIPPASPRPV-K----ELKLEN-GEMIDK 839 (1280)
Q Consensus 770 cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~--~~~~~~~--~~~~~~~~~~i~~~~~~~~-~----~~~~~~-~~~~~~ 839 (1280)
-|..-.-...++.--+.||++.-.++ .++- +.+.... ..-.....+.+....+..+ + +...+. ..+.
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~-nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g-- 165 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIA-NLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG-- 165 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHh-cCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc--
Confidence 66654322333444456666543222 1210 0000000 0000000000000000000 0 000000 0000
Q ss_pred chhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCC
Q 000796 840 DDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGV 919 (1280)
Q Consensus 840 ~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~ 919 (1280)
+-...+-..+|..+-.-..-+|..||++|+..|=... .+|..+ .|..++=-+++.+..+
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la-~~~~~~-------ly~~li~~Ll~~L~~~------------- 224 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA-SSCNRD-------LYVELIEHLLKGLSNR------------- 224 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH-HhcCHH-------HHHHHHHHHHhccCCC-------------
Confidence 0001244557777777777899999999998775543 444433 3333333333444321
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh---cccchhHHHHHHHHHHHHHHhcCCCCC
Q 000796 920 DGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFI---KRPHQSLAGIGIAAFVRLMSNAGNLFS 996 (1280)
Q Consensus 920 ~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i---~q~~e~la~~g~~~l~~ll~~~g~~f~ 996 (1280)
+... -. .|.++++..++.--.+-|. ..++.+.-++..+. ....|.+-+-+.++|.-|+..+-...
T Consensus 225 ------~q~~-~~-rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei- 292 (1233)
T KOG1824|consen 225 ------TQMS-AT-RTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI- 292 (1233)
T ss_pred ------CchH-HH-HHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh-
Confidence 1111 12 6788888888775444332 33444444454544 66778999999999999999887766
Q ss_pred HHHHHHHHHHHHH
Q 000796 997 DEKWLEVAESLKE 1009 (1280)
Q Consensus 997 ~~~W~~i~~~l~~ 1009 (1280)
-.+|..|+.-.-+
T Consensus 293 ~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 293 LPHVPEIINLCLS 305 (1233)
T ss_pred cccchHHHHHHHH
Confidence 4678887765444
No 32
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=64.12 E-value=3.5e+02 Score=33.29 Aligned_cols=161 Identities=13% Similarity=0.166 Sum_probs=100.2
Q ss_pred hhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccC
Q 000796 675 NFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFP 754 (1280)
Q Consensus 675 ~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~ 754 (1280)
+|-+-++.-||. +..+.+.-+|.+.|+.|.+|+.+....+...=.....-+--|+.+.++.+++.|=+.+-.+...|++
T Consensus 326 ~f~~iL~~l~Ev-L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 326 HFAEILLLLLEV-LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 455545545554 5666778899999999999999999888754444443334457778889999999888877777653
Q ss_pred cccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhccC
Q 000796 755 YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENG 834 (1280)
Q Consensus 755 ~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 834 (1280)
. .|..-...|+.. .|-.+.+-+|.++..+...+... +..
T Consensus 405 ~------~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e~l~~E------------------------------eL~ 443 (516)
T KOG2956|consen 405 L------QCIVNISPLILT-----ADEPRAVAVIKMLTKLFERLSAE------------------------------ELL 443 (516)
T ss_pred h------hHHHHHhhHHhc-----CcchHHHHHHHHHHHHHhhcCHH------------------------------HHH
Confidence 1 233333333333 34456666676665443332110 000
Q ss_pred cCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC-CCCCHh
Q 000796 835 EMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG-HLFSLP 886 (1280)
Q Consensus 835 ~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G-~~f~~~ 886 (1280)
.+.+ -+.=++...+......||+.|+=.|-.+...-| ..+.|.
T Consensus 444 ~ll~---------diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 444 NLLP---------DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred Hhhh---------hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 0000 022233334445677999999999999888888 666554
No 33
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=63.95 E-value=2.2e+02 Score=37.61 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHcccccccc-CcHHHHH-HHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH--
Q 000796 696 IRELIIRCVSQMVLSRVNNVKS-GWKSMFM-VFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL-- 771 (1280)
Q Consensus 696 ire~iL~cl~~mi~~~~~~IkS-GW~~IF~-iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL-- 771 (1280)
-|..+.+.+..+++.+...++| |=.-.|+ ++.++..+++|+-.-.+|..++.|.+--++.=+- ...+-|.+-|.
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F--~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPF--TEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCcc--HHHHHHHhheeee
Confidence 4777788888889999999999 9999998 7788888999999999999999998832221110 23445555554
Q ss_pred HHHHcCCCCcc-ccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHHHHH
Q 000796 772 IAFTNSRFNKD-ISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLL 850 (1280)
Q Consensus 772 ~~F~~~~~~~n-iSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL 850 (1280)
..|.-.+.|.+ |.-. ++-..+... +++.+....+-+|+|
T Consensus 221 I~Fkppk~D~~~I~re--DL~~sLr~a--------------------------------------l~stP~Fa~~~lp~L 260 (1030)
T KOG1967|consen 221 ITFKPPKDDTITIRRE--DLKASLRSA--------------------------------------LVSTPSFAPFALPLL 260 (1030)
T ss_pred eeccCCCCCcccccHH--HHHHHHHHH--------------------------------------HhcCccchhhHHHHH
Confidence 34555555533 2211 011111111 111122345566654
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHH
Q 000796 851 AGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 901 (1280)
Q Consensus 851 ~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~ 901 (1280)
.. =..++.+-+..-+++||-++...||..==-++|...+..+=+-|+.
T Consensus 261 lE---KL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 261 LE---KLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred HH---HhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 43 1234566788899999999999999652225666655544444444
No 34
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=63.73 E-value=49 Score=34.87 Aligned_cols=120 Identities=13% Similarity=0.225 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhHHhhhc---------CCCCceehHHHHHHHHhhcccccc------ccchhHHHHHHHHHHhhcCCCCH
Q 000796 584 IIDFVKALCKVSMEELRS---------ASDPRVFSLTKIVEIAHYNMNRIR------LVWSSIWHVLSDFFVNIGCSENL 648 (1280)
Q Consensus 584 i~~fv~ALc~vS~eel~s---------~~~pr~FsLqKLveVa~~Nm~Rir------l~W~~iW~~L~~hf~~vg~~~n~ 648 (1280)
.....+.||.++..+... ...+|.|+|+-|-.+-..+...+. ..-.-+.+.+..++.+.+++++.
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~ 87 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF 87 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345678899998432221 123578999988888777766555 22245678888899988888777
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhhhhh-hhhhHHH-HHhcC-ChHHHHHHHHHHHHHHH
Q 000796 649 SIAIFAMDSLRQLSMKFLEREELANYNFQNE-FMKPFVI-VMRKS-NAVEIRELIIRCVSQMV 708 (1280)
Q Consensus 649 ~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~-fL~Pfe~-im~~~-~~~eire~iL~cl~~mi 708 (1280)
.+-..++..+..+..+|-+ . .+.|-+ ||.-.-. ++... ...+-|+.+|+++..+.
T Consensus 88 ~i~~~slri~~~l~~~~~~--~---Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 88 PIFSRSLRIFLTLLSRFRS--H---LKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 7777777777777665532 1 122322 2222222 33322 24578999999998875
No 35
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=62.97 E-value=13 Score=27.64 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHHHH
Q 000796 850 LAGLSELSFDPRPEIRKSALQVLFETLR 877 (1280)
Q Consensus 850 L~~L~~l~~d~R~eVR~~Al~tLF~iL~ 877 (1280)
+-.+.++..|+.++||..|+..|-++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3344566779999999999999987765
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=62.59 E-value=31 Score=33.11 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=63.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccc
Q 000796 637 DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK 716 (1280)
Q Consensus 637 ~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~Ik 716 (1280)
+++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..+++..+.++.++.........
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34444445667788888888888776321 2333333455788888877764 5789999999999999765532211
Q ss_pred cCcHH-HHHHHHHhhcCCchhHHHHHHHHHHHH
Q 000796 717 SGWKS-MFMVFTTAAYDDHKNIVLLAFEIIEKI 748 (1280)
Q Consensus 717 SGW~~-IF~iL~~aa~~~~~~lV~~aF~~l~~I 748 (1280)
-=++. +...|-....+.+..+.+.+..++..+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 11111 233333333344555666666555544
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=57.04 E-value=1.1e+02 Score=35.61 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=71.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccc
Q 000796 633 HVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV 712 (1280)
Q Consensus 633 ~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~ 712 (1280)
+++...+.-...|++..||..|+.+|...+ ++++ .+-.+++.-|...+.. .+.+|+...++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~------~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDK------ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhCh------HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 344444555566778899999999998766 4544 2234445556666643 488999999999999999999
Q ss_pred cccccCcH---------HHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000796 713 NNVKSGWK---------SMFMVFTTAAYDDHKNIVLLAFEIIEK 747 (1280)
Q Consensus 713 ~~IkSGW~---------~IF~iL~~aa~~~~~~lV~~aF~~l~~ 747 (1280)
..+-..+. .+..+|.....+.++.+-..|-+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCK 140 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77654333 466666655555555555555555543
No 38
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=56.34 E-value=2.8e+02 Score=29.66 Aligned_cols=59 Identities=24% Similarity=0.444 Sum_probs=43.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHh------HhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHH
Q 000796 926 LDQDAWLYETCTLALQLVVDLFVKFYNT------VNPLLRKVLMLLVSFIKRPHQ-SLAGIGIAAFVRLMS 989 (1280)
Q Consensus 926 ~~~~~W~~eT~~laL~~l~~Lf~~yf~~------l~~~l~~~l~lL~~~i~q~~e-~la~~g~~~l~~ll~ 989 (1280)
.+.+.| ++|+.+.+.++-|..++ +..++..+++-+...+.+++| ++.+=|-.-++.++.
T Consensus 99 ~d~~~W-----~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 99 VDVEDW-----VLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVS 164 (174)
T ss_pred ccHHHH-----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 456678 78999998888886643 444566667777777778888 888888877777765
No 39
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.85 E-value=7.9e+02 Score=34.41 Aligned_cols=255 Identities=19% Similarity=0.221 Sum_probs=132.3
Q ss_pred CceehHHHHHHHHhhccccccccchhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhch----------hhhhhh
Q 000796 605 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLER----------EELANY 674 (1280)
Q Consensus 605 pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~----------eEL~~f 674 (1280)
-|+=+|+-|+.|...--.-....|..|.+.|...+ ..+......++..+-++||-++..||.. +-+..|
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~-d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~f 936 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSAT-DFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVF 936 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHh-hccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHH
Confidence 46667777777765554445555887777776322 2232235678888999999888888752 334445
Q ss_pred hhhhhhh----hh---------HHHH-HhcCChHHHHHHHHHHHHHHHHcccccc--ccCcHHHHHHHHHhhcCCchhHH
Q 000796 675 NFQNEFM----KP---------FVIV-MRKSNAVEIRELIIRCVSQMVLSRVNNV--KSGWKSMFMVFTTAAYDDHKNIV 738 (1280)
Q Consensus 675 ~fQ~~fL----~P---------fe~i-m~~~~~~eire~iL~cl~~mi~~~~~~I--kSGW~~IF~iL~~aa~~~~~~lV 738 (1280)
.=|+.=+ .. |... |..+.+..-..+.++.+.. ....+-+ --=|-.+|.-|.-.+.|..+++=
T Consensus 937 s~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVR 1014 (1610)
T KOG1848|consen 937 SRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRAEVR 1014 (1610)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchHHHh
Confidence 4454211 11 0110 1111111111111111111 0000001 11388888888887888888888
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHHH-HH-cCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcc
Q 000796 739 LLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIA-FT-NSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISA 816 (1280)
Q Consensus 739 ~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~-F~-~~~~~~niSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 816 (1280)
+-|-+++=.|++-|-..++ .....+|+.-... .- +++ .++++- +..++...
T Consensus 1015 ngAvqtlfri~~Shg~~l~---~~aW~s~~w~vi~pLLd~~~-~q~~~e-----------------------wngkeiqk 1067 (1610)
T KOG1848|consen 1015 NGAVQTLFRIFNSHGSKLG---TNAWASCCWLVIMPLLDSQP-IQNVSE-----------------------WNGKEIQK 1067 (1610)
T ss_pred hhHHHHHHHHHhhhcccCC---hhHHHHHHHHHHHHHhcccc-ccchhh-----------------------hcchhHhh
Confidence 8899999999988876666 3444444331111 00 111 011100 00000000
Q ss_pred cCCCCCCCchhhhh----hcc-CcCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC--CCCCHhHHH
Q 000796 817 KIPPASPRPVKELK----LEN-GEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG--HLFSLPLWE 889 (1280)
Q Consensus 817 ~i~~~~~~~~~~~~----~~~-~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G--~~f~~~~W~ 889 (1280)
+..+.+..+. .|. .+. ..+...+.....|--+|.=|-++..|.-+|+-.+|+..+...+..+. +.+...+-.
T Consensus 1068 qwtet~~lti-sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~ 1146 (1610)
T KOG1848|consen 1068 QWTETSCLTI-SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTL 1146 (1610)
T ss_pred hhhhhhhhhH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHH
Confidence 0000000000 000 000 01112234567899999999999999999999999999999999773 445444433
Q ss_pred H
Q 000796 890 R 890 (1280)
Q Consensus 890 ~ 890 (1280)
.
T Consensus 1147 k 1147 (1610)
T KOG1848|consen 1147 K 1147 (1610)
T ss_pred H
Confidence 3
No 40
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=53.83 E-value=13 Score=34.89 Aligned_cols=27 Identities=19% Similarity=0.566 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCchhhhchHHHHHHH
Q 000796 446 AIKAIVTIADEDGNYLQEAWEHILTCV 472 (1280)
Q Consensus 446 alraLl~ia~~~Gn~L~~sW~~IL~~i 472 (1280)
.++++..+..+.|+.+++||+.||.++
T Consensus 38 il~ci~qil~~~~~~i~SGW~~if~il 64 (86)
T PF09324_consen 38 ILECILQILQSRGENIKSGWKVIFSIL 64 (86)
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 455566667789999999999999985
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=50.75 E-value=1.1e+02 Score=29.14 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhh
Q 000796 850 LAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQD 929 (1280)
Q Consensus 850 L~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~ 929 (1280)
+..|.++..+...++|..|+.+|..+-.. +++.+..++..=.+|.+-.+.... +..
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~-----------------~~~-- 64 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSE-----------------DEE-- 64 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCC-----------------CHH--
Confidence 44455556677799999999998886653 366777777733445554443310 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 000796 930 AWLYETCTLALQLVVDLFVKFYNTVNPLLR-KVLMLLVSFIKRPHQSLAGIGIAAFVRLM 988 (1280)
Q Consensus 930 ~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~-~~l~lL~~~i~q~~e~la~~g~~~l~~ll 988 (1280)
+...+.-+|..++.-.. .....+.. +++..|..++...+....+.++.+|.+|.
T Consensus 65 --v~~~a~~~L~~l~~~~~---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 65 --VVKAALWALRNLAAGPE---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --HHHHHHHHHHHHccCcH---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11233444444443221 11222232 46778888888877788888888876653
No 42
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.57 E-value=2.5e+02 Score=27.05 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 000796 864 IRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLV 943 (1280)
Q Consensus 864 VR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l 943 (1280)
.|++++-.|-.+-..-|.. +...++.++=|++..+.. +...-.| ....+|..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D-------------------~d~rVRy---~AcEaL~ni 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD-------------------QDSRVRY---YACEALYNI 54 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC-------------------CcHHHHH---HHHHHHHHH
Confidence 3777777777766655544 788899999999977632 1112223 234566666
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 000796 944 VDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 988 (1280)
Q Consensus 944 ~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll 988 (1280)
++.+. +.+-..+.++++.|...+...++. .+.|.+-|-+|+
T Consensus 55 ~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 55 SKVAR---GEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL 95 (97)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence 65544 444457888999999988887776 455666665554
No 43
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=46.76 E-value=3.2e+02 Score=33.57 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=69.7
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchh
Q 000796 849 LLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQ 928 (1280)
Q Consensus 849 LL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~ 928 (1280)
+..-|..+..+++.+=|++|+.-|..++.. +.| ..|+.+|.++|.-+|+.+....+ +
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e--~sf--svWeq~f~~iL~~l~EvL~d~~~-----------------~-- 344 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCE--GSF--SVWEQHFAEILLLLLEVLSDSED-----------------E-- 344 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHc--cch--hHHHHHHHHHHHHHHHHHccchh-----------------h--
Confidence 333444455678999999999999998874 345 58999999999999998854211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 000796 929 DAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRL 987 (1280)
Q Consensus 929 ~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~l 987 (1280)
.-..+||+-+.++.++-=..+...-.-...-++.+-+..++...+++.+|.-++
T Consensus 345 -----~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 345 -----IIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred -----HHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 224678888888776533222222222233344555566665555555554333
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=44.22 E-value=1.5e+02 Score=28.63 Aligned_cols=71 Identities=13% Similarity=0.283 Sum_probs=52.6
Q ss_pred hhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Q 000796 678 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 750 (1280)
Q Consensus 678 ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~ 750 (1280)
+.+++|....+ ...+..||....+++.++.......+-.--.-||..|.....|.+++ |+.|-+.|..++.
T Consensus 26 ~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 55666665533 34678899999999999998876666556788898888888887776 5666677765554
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=44.16 E-value=1.5e+02 Score=31.58 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 000796 861 RPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLAL 940 (1280)
Q Consensus 861 R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL 940 (1280)
.+.||+.|+-+|-++...|+....+ | +=.++..+.. ++ ..-...|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~-------~~~l~~~L~D--------------------~~-----~~VR~~al 46 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--Y-------LPNLYKCLRD--------------------ED-----PLVRKTAL 46 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--H-------HHHHHHHHCC--------------------CC-----HHHHHHHH
Confidence 3789999999999999999776633 2 2122233321 11 13345566
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHh
Q 000796 941 QLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 990 (1280)
Q Consensus 941 ~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~ 990 (1280)
..+..|..+-+-... +.++..+..|+..+++.+...+..+|..+...
T Consensus 47 ~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 47 LVLSHLILEDMIKVK---GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHcCceeeh---hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 666666554333333 23345566778899999999999999998886
No 46
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=43.98 E-value=3.8e+02 Score=31.57 Aligned_cols=99 Identities=9% Similarity=0.184 Sum_probs=68.9
Q ss_pred HHHHHHHHHHccccccccCcHHHHHHH-HHh----hc--CCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHH
Q 000796 700 IIRCVSQMVLSRVNNVKSGWKSMFMVF-TTA----AY--DDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLI 772 (1280)
Q Consensus 700 iL~cl~~mi~~~~~~IkSGW~~IF~iL-~~a----a~--~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~ 772 (1280)
||.++..+|..-++.+...=..||+.+ ..+ .+ ...|+.-..=|+.++.|+..+++.+...+++.|..+++++
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi- 170 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI- 170 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH-
Confidence 577777777777776666655555433 211 12 2457888888999999998877666555578999999998
Q ss_pred HHHcCCCCccccHHHHHHHHHHHHhhh
Q 000796 773 AFTNSRFNKDISLNAIAFLRFCATKLA 799 (1280)
Q Consensus 773 ~F~~~~~~~niSL~Ai~~L~~~~~~l~ 799 (1280)
..+.+....+|+-+++..+.....++.
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 556666667899998888876665543
No 47
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.84 E-value=1.1e+02 Score=31.63 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHH
Q 000796 644 CSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKS 721 (1280)
Q Consensus 644 ~~~n~~va~~AvdsLrqL~~kfLe--~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~ 721 (1280)
.|+|+.+..+|+..|..++.---. ..|++ .++|+..+..+.....+.+|++.+++.|.+ |..
T Consensus 47 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva----sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~------------W~~ 110 (144)
T cd03568 47 NHKDPNVQLRALTLLDACAENCGKRFHQEVA----SRDFTQELKKLINDRVHPTVKEKLREVVKQ------------WAD 110 (144)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh----hHHHHHHHHHHhcccCCHHHHHHHHHHHHH------------HHH
Confidence 468899999998777654411100 12222 256777777766655789999999998874 655
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHH
Q 000796 722 MFMVFTTAAYDDHKNIVLLAFEIIE 746 (1280)
Q Consensus 722 IF~iL~~aa~~~~~~lV~~aF~~l~ 746 (1280)
-|. .+..-..+..+|+.|+
T Consensus 111 ~f~------~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 111 EFK------NDPSLSLMSDLYKKLK 129 (144)
T ss_pred HhC------CCcccHHHHHHHHHHH
Confidence 443 2333345566666654
No 48
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=42.55 E-value=1.5e+02 Score=34.92 Aligned_cols=111 Identities=13% Similarity=0.235 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHHH-HHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 000796 860 PRPEIRKSALQVLF-ETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTL 938 (1280)
Q Consensus 860 ~R~eVR~~Al~tLF-~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~l 938 (1280)
.-|+.|..-+-.++ -++...|..+.+. =..|++.|.-|.++-+...... -+ +-+..
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~~-v~~I~~~vf~~Tl~MI~~d~~~---------------yP-------e~r~~ 139 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQPQ-VPQILEAVFECTLPMINKDFEE---------------YP-------EHRVN 139 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCCC-HHHHHHHHHHHHHHHHSSTSSS---------------SH-------HHHHH
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhhh---------------Ch-------HHHHH
Confidence 45566665544444 4555667766543 4677777777777777432110 11 23333
Q ss_pred HHHHHHHHHHHHHHhHhH----HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCC
Q 000796 939 ALQLVVDLFVKFYNTVNP----LLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGN 993 (1280)
Q Consensus 939 aL~~l~~Lf~~yf~~l~~----~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~ 993 (1280)
=.+.+..+-.++|+.+.. .+..+++-+.|.+++.+..++..|..++..|+.+...
T Consensus 140 ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 140 FFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 344444444556666553 5888999999999999999999999999999986665
No 49
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=41.46 E-value=5.3e+02 Score=31.89 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 000796 946 LFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLE 1002 (1280)
Q Consensus 946 Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~~~W~~ 1002 (1280)
+...||..++..+-++...+..|+......+-.-|.-|+..+..+.+.....+.|+.
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~ 337 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKA 337 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccc
Confidence 445677777777778888888888887777777888899999999988888888884
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.82 E-value=1.2e+03 Score=32.06 Aligned_cols=275 Identities=17% Similarity=0.231 Sum_probs=162.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHH
Q 000796 644 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 723 (1280)
Q Consensus 644 ~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF 723 (1280)
...|+.+|.+|.--+|+++.|+-++ ++. .-|..+...+-.+..+.+..-||..+-+.+..+-..-..- +|+-+.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~--l~~-e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell 120 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSR--LSA-EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELL 120 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhc--CCH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHH
Confidence 4468899999999999999885442 111 1244444455555566677778888777777765544433 899999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhhcccc
Q 000796 724 MVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 803 (1280)
Q Consensus 724 ~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~~~~ 803 (1280)
..|-.+.++.++.+=..||-++..+...+=... ...+.++...|.+ +-+..+..|-..|+.-+-..+..+.+
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q-~~~d~s~~vr~~a~rA~~a~~~~~~~--- 192 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQ-TMTDPSSPVRVAAVRALGAFAEYLEN--- 192 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHH-hccCCcchHHHHHHHHHHHHHHHhcc---
Confidence 999988998999999999998887665542221 2233344443333 22222222444444433222222100
Q ss_pred cccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcc--hhhhhHHH-HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC
Q 000796 804 SASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKD--DHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFETLRNHG 880 (1280)
Q Consensus 804 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~lW~p-LL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G 880 (1280)
+++ ...+--+| ++..+.+++.+.+.+.-..++..|-+++.+-+
T Consensus 193 ----------------------------------~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 193 ----------------------------------NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred ----------------------------------chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence 000 12344566 88888888888888888899999988888776
Q ss_pred CCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHh----H
Q 000796 881 HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVN----P 956 (1280)
Q Consensus 881 ~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~----~ 956 (1280)
..|++.+ ..||==.+..... +.-...++..||..++.+-. |=.... .
T Consensus 239 k~l~~~l-----~~ii~~~l~Ia~n-----------------------~~l~~~~R~~ALe~ivs~~e-~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 239 KLLRPHL-----SQIIQFSLEIAKN-----------------------KELENSIRHLALEFLVSLSE-YAPAMCKKLAL 289 (1075)
T ss_pred HHHHHHH-----HHHHHHHHHHhhc-----------------------ccccHHHHHHHHHHHHHHHH-hhHHHhhhchh
Confidence 6655432 2222111111111 00112556778877776533 311111 2
Q ss_pred HHHHHHHHHHHhhccc----------------chhHHHHHHHHHHHHHHhcCCCC
Q 000796 957 LLRKVLMLLVSFIKRP----------------HQSLAGIGIAAFVRLMSNAGNLF 995 (1280)
Q Consensus 957 ~l~~~l~lL~~~i~q~----------------~e~la~~g~~~l~~ll~~~g~~f 995 (1280)
+.+.+.-.+..+|+.. .++.+++|.+++-++-...|++-
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~ 344 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ 344 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh
Confidence 3455566666666642 24578888888888888777654
No 51
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.57 E-value=8.4e+02 Score=30.30 Aligned_cols=201 Identities=16% Similarity=0.168 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhc
Q 000796 736 NIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEIS 815 (1280)
Q Consensus 736 ~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~ 815 (1280)
.....-|+.+..+++=.+..+. .+....+|+.+...|+++...+.=..++..|-.+..+ |
T Consensus 149 ~~l~~ll~~l~nviKfn~~~l~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y---~-------------- 208 (464)
T PF11864_consen 149 SNLSDLLQFLVNVIKFNFNYLD---EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY---G-------------- 208 (464)
T ss_pred hhHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---C--------------
Confidence 3445566666666665555554 4677788888888876665432213444444332221 1
Q ss_pred ccCCCCCCCchhhhhhccCcCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHh
Q 000796 816 AKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSV 895 (1280)
Q Consensus 816 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~V 895 (1280)
.+++ .---+++.-|..+..-. +..+.|-+++-.++++|-++- .
T Consensus 209 -~iP~-----------------------~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~-----------~ 251 (464)
T PF11864_consen 209 -DIPS-----------------------ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS-----------A 251 (464)
T ss_pred -cCCh-----------------------HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH-----------H
Confidence 1111 01123444555542211 778888888888888663321 2
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH--------HhHhHHHHHHHHHHHH
Q 000796 896 LFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFY--------NTVNPLLRKVLMLLVS 967 (1280)
Q Consensus 896 LfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf--------~~l~~~l~~~l~lL~~ 967 (1280)
+.-|.+.++.... +... -...++|-+.++.... ..+..-..-++.-|..
T Consensus 252 i~~L~~iL~~~~~----------------~~~~-------~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~ 308 (464)
T PF11864_consen 252 IRTLCDILRSPDP----------------QNKR-------DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLN 308 (464)
T ss_pred HHHHHHHHcccCc----------------cccc-------cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHH
Confidence 2223333321100 0000 1223344444443322 1222112236666666
Q ss_pred hhcccchhHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHhcCc
Q 000796 968 FIKRPHQSLAGIGIAAFVRLM-SNAGNLFSDEKWLEVAESLKEAAKATLP 1016 (1280)
Q Consensus 968 ~i~q~~e~la~~g~~~l~~ll-~~~g~~f~~~~W~~i~~~l~~l~~~t~~ 1016 (1280)
-+...+..++--...++.+++ .+.++.+.++.|+.+++.+.+++..+.+
T Consensus 309 al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 309 ALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQP 358 (464)
T ss_pred HHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccc
Confidence 777777777777778889999 8889999999999999988886654443
No 52
>PRK09687 putative lyase; Provisional
Probab=39.12 E-value=5.2e+02 Score=29.84 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=54.1
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCc
Q 000796 640 VNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 719 (1280)
Q Consensus 640 ~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW 719 (1280)
...-.|++..|+..|+..|+++- . .+.+.++.. +..+.+..+|...+..+.++-.... +=
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~-----~---------~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~-----~~ 88 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRG-----G---------QDVFRLAIE-LCSSKNPIERDIGADILSQLGMAKR-----CQ 88 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC-----c---------chHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCcc-----ch
Confidence 33346778888888888877543 1 122233333 2356678899999988888522111 01
Q ss_pred HHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhh
Q 000796 720 KSMFMVFTTA-AYDDHKNIVLLAFEIIEKIIRD 751 (1280)
Q Consensus 720 ~~IF~iL~~a-a~~~~~~lV~~aF~~l~~I~~d 751 (1280)
..+|..|... ..|+++.+-..|...|-.+...
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~ 121 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKK 121 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc
Confidence 2466667654 4555555555777777665443
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.74 E-value=1.2e+03 Score=32.03 Aligned_cols=425 Identities=15% Similarity=0.184 Sum_probs=212.6
Q ss_pred hhhhHHHHHhcCChHHHHHHHHHHHHHHHHcccccc---ccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhccCcc
Q 000796 680 FMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV---KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYI 756 (1280)
Q Consensus 680 fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~I---kSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l 756 (1280)
.|.||.. ..+.+..|...++.|+..++.+++..- .+--..+|+++..++. ..|.+-..|-+.+..|..+-. ..
T Consensus 97 ~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~-~~ 172 (1176)
T KOG1248|consen 97 ILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPP-FA 172 (1176)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCC-CC
Confidence 3445554 234567788999999999998855422 2223445666665553 467777778888888876421 11
Q ss_pred cccc-cccHHHHHHHHHHHHcCCCCcccc---HHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhhc
Q 000796 757 TETE-TTTFTDCVNCLIAFTNSRFNKDIS---LNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLE 832 (1280)
Q Consensus 757 ~~~~-~~~f~dlI~cL~~F~~~~~~~niS---L~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 832 (1280)
+..+ +....-.=.||..+.+--. .+.. +..+.+|+....
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~-~a~~t~v~~~L~Ll~~~~~------------------------------------ 215 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLG-SAENTTVLRSLMLLRDVLS------------------------------------ 215 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHhhc------------------------------------
Confidence 1000 1111111222322221111 0111 122222221100
Q ss_pred cCcCCCcchhhhhH-HHHHHHHhh----hcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhc
Q 000796 833 NGEMIDKDDHLYFW-FPLLAGLSE----LSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTI 907 (1280)
Q Consensus 833 ~~~~~~~~~~~~lW-~pLL~~L~~----l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~ 907 (1280)
. | .++...+.+ ++.-....|+..++|+|-+.+..+...++.++-..++ --+..+.
T Consensus 216 -----------~-~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL-----~al~~l~--- 275 (1176)
T KOG1248|consen 216 -----------T-FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLL-----TALMTLS--- 275 (1176)
T ss_pred -----------c-CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH-----HHHHHhC---
Confidence 0 1 234444444 4455678999999999999999998877665433322 1122221
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 000796 908 DPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRL 987 (1280)
Q Consensus 908 ~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~l 987 (1280)
++. +...-...|+ .-++-|. ..+-+..-+..-..+++++.++..|...+++.+.....+|++.+
T Consensus 276 -ps~-----------~D~~~t~~W~-~v~~~~~---~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~i 339 (1176)
T KOG1248|consen 276 -PSE-----------NDDLLTVAWL-KVLNEAH---DILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEI 339 (1176)
T ss_pred -CCc-----------cchHHHHHHH-HHHHHHH---HHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 110 0123346786 3222222 22222333333456889999999988889999999999999988
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhcCccccccCCcchhhhhhhhcccccCCCCCCCCCCCchhhhhhhhHHHHHHHHH
Q 000796 988 MSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKC 1067 (1280)
Q Consensus 988 l~~~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1280)
+..... ..+..=...+ ..+.. . .|...|
T Consensus 340 l~~sv~-~~~~~c~~~~---~~~l~--~-kf~~~~--------------------------------------------- 367 (1176)
T KOG1248|consen 340 LKESVT-VIDALCSKQL---HSLLD--Y-KFHAVW--------------------------------------------- 367 (1176)
T ss_pred hcccCc-ccHHHHHHHH---HHHHc--c-hHHHHH---------------------------------------------
Confidence 876555 2211111111 11000 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHhhcccCCCC--------CCCchhh
Q 000796 1068 RAAVQLLLIQAVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQ--------DPPLLRL 1139 (1280)
Q Consensus 1068 kcvlQLllIq~~~el~~~~~~~l~~~~l~~Ll~~L~~s~~fA~~fN~~~~LR~~L~k~g~~~~~~--------~PnLlkQ 1139 (1280)
+- .+|.+.-+|+.++. ++..++..-|..|.+ .+..-+|-....|...+=-+ +.-|. +=|| .-
T Consensus 368 ~~-----ilqi~s~~fek~G~-~s~~~l~~~L~~l~~-lr~~~d~~~~~~ld~~IGSA--V~AmGPe~vL~~lpLnl-~~ 437 (1176)
T KOG1248|consen 368 RF-----ILQILSALFEKCGE-LSGPELTKTLEGLCD-LRASPDFFHKLQLDQCIGSA--VRAMGPERVLTILPLNL-HA 437 (1176)
T ss_pred HH-----HHHHHHHHHHHhhh-hcCHHHHHHHHHHHH-hhcCCCCccHHHHHHHHHHH--HHhhCHHHHHHHcchhc-cc
Confidence 00 13344445555433 334444444433332 12222222222222221110 01110 1133 11
Q ss_pred HhhhHH-HHHHHHHHHhhCCCCCCcHHhHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccccCCcchhhhhhhhh
Q 000796 1140 ENESFQ-ICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRRELAARA 1218 (1280)
Q Consensus 1140 E~~s~~-~yl~iL~~l~~d~~~~~~~~~ie~~L~~lc~~il~~y~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~aw~ 1218 (1280)
|+.+.. .+|-=++|=|..+.+. .--.+.++|+.+.+-....++..++ .+.+...+..
T Consensus 438 ~s~~~~RsWLLPvLR~~i~~A~L---a~F~~~ivpla~sl~~K~~~l~~~~-------------------~~~~~~~tl~ 495 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYIIGASL---AFFTEYIVPLAMSLQLKAKKLKEAG-------------------SQVSLYDTLV 495 (1176)
T ss_pred cccccchhHhHHHHHHhhccCcH---HHHHHHHHHHHHHHHHHHHhhhhcc-------------------CcHHHHHHHH
Confidence 222211 2233334444433332 3455689999998888877766532 1233333333
Q ss_pred hHHHHHHHHHhcCChHHHHHhhhhhHHHHHHHhcccCCChhHHHHHHHHHH
Q 000796 1219 PLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQVALSDMLD 1269 (1280)
Q Consensus 1219 pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~L~~~~~~~~e~r~al~~~f~ 1269 (1280)
-=+-..|.|+|+.|-|- ..-.+.++|.++.-|... +|+|..+..-++
T Consensus 496 ~QLW~LLP~FC~~P~Dl-~~sF~~la~~l~~al~~~---~elr~~Ic~sL~ 542 (1176)
T KOG1248|consen 496 DQLWSLLPGFCNYPVDL-AESFTDLAPILGAALLKR---PELRETICNSLR 542 (1176)
T ss_pred HHHHHhChhhhCCCccH-HHHHHHHHHHHHHHHhcc---hHhHHHHHHHHH
Confidence 33445699999999764 333567888888888876 489988877764
No 54
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.83 E-value=1.6e+02 Score=30.35 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHH
Q 000796 644 CSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVS 705 (1280)
Q Consensus 644 ~~~n~~va~~AvdsLrqL~~kfLe--~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~ 705 (1280)
.|+|+.+..+|+..|..+..---. ..|++. ++|+.-+..+.....+..|++.+++.|.
T Consensus 51 ~~~n~~vql~AL~LLe~~vkNCG~~fh~evas----~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 51 LSKNPNVQLYALLLLESCVKNCGTHFHDEVAS----REFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh----HHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 357899999998877654421100 123332 4566666666666778899999998887
No 55
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.06 E-value=3.6e+02 Score=34.54 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=88.6
Q ss_pred CceehHHHHHHHHhhccccccccc-hhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh-hhhhh
Q 000796 605 PRVFSLTKIVEIAHYNMNRIRLVW-SSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQ-NEFMK 682 (1280)
Q Consensus 605 pr~FsLqKLveVa~~Nm~Rirl~W-~~iW~~L~~hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ-~~fL~ 682 (1280)
+..=.|+|+-|=+- .++...| .+--+.+.+-|.+...|+++.+|..|+.++.|..+- ....+ -+. ..||
T Consensus 147 gA~~AL~KIcEDsa---~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qal---~~~iD~Fl- 217 (885)
T KOG2023|consen 147 GAFGALQKICEDSA---QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQAL---YVHIDKFL- 217 (885)
T ss_pred hhHHHHHHHHhhhH---HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHHH---HHHHHHHH-
Confidence 33444666554332 1222223 233467788888888999999999999999987531 11100 001 2233
Q ss_pred hHHHHHh--cCChHHHHHHHHHHHHHHHHccccccccCcHHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Q 000796 683 PFVIVMR--KSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 750 (1280)
Q Consensus 683 Pfe~im~--~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~ 750 (1280)
|.++. +..+++||..|=+.+.-+++.+.+.+..--+.|..-.-....|.++++.--|.+-.--+..
T Consensus 218 --e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 218 --EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred --HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 34333 4568999999999999999999999999888888776666777788866666665544443
No 56
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.64 E-value=5.2e+02 Score=27.83 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccc-
Q 000796 638 FFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK- 716 (1280)
Q Consensus 638 hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~Ik- 716 (1280)
++.+.+-+++..+|..|++.+..+...-|- |- ... -|...-+..+++..||....+.+..+-+.+.+-+.
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP---~~c-vp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLV-----NP---KQC-VPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----Ch---HHH-HhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345566788999999999988765521111 00 011 13333355678999999999999998888876543
Q ss_pred ---cCcHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcC---CCCccccHHH
Q 000796 717 ---SGWKSMFMVFTTAAYDDHKNI---VLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNS---RFNKDISLNA 787 (1280)
Q Consensus 717 ---SGW~~IF~iL~~aa~~~~~~l---V~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~---~~~~niSL~A 787 (1280)
.|=+..|..-.....+..... ....|..+-.+++.. ...-..++..|.+.-.. ..+.+..-.-
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~--------r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN--------RKSRRKFLKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc--------cHhHHHHHHHHHHHHHhhccccccccchhH
Confidence 355555554444333322111 233333333333311 11222223333222111 1112334556
Q ss_pred HHHHHHHHHhhhc
Q 000796 788 IAFLRFCATKLAE 800 (1280)
Q Consensus 788 i~~L~~~~~~l~~ 800 (1280)
+.++.++++.++.
T Consensus 155 l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 155 LDFLLFLAENLAT 167 (187)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888888874
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.55 E-value=73 Score=23.55 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000796 636 SDFFVNIGCSENLSIAIFAMDSLRQLS 662 (1280)
Q Consensus 636 ~~hf~~vg~~~n~~va~~AvdsLrqL~ 662 (1280)
-++|.+..++++..||..|+..|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 356777778999999999999998876
No 58
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=31.01 E-value=6.4e+02 Score=26.39 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHh----HHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 000796 862 PEIRKSALQVLFETLRNHGHLFSLP----LWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCT 937 (1280)
Q Consensus 862 ~eVR~~Al~tLF~iL~~~G~~f~~~----~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~ 937 (1280)
...|.-|++.+-.+|..+|..|... .-..+++.-|+|.+-..... . ......
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~-------------------~-----~~~i~~ 91 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS-------------------S-----DFPIFS 91 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh-------------------h-----hhHHHH
Confidence 4678889999999999999988632 33445555555544433221 1 125567
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 000796 938 LALQLVVDLFVKFYNTVNPLLRKVLMLLVS 967 (1280)
Q Consensus 938 laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~ 967 (1280)
.+++-+..++.+|-..+..-+.-++..+..
T Consensus 92 ~slri~~~l~~~~~~~Lk~ele~~l~~i~~ 121 (168)
T PF12783_consen 92 RSLRIFLTLLSRFRSHLKLELEVFLSHIIL 121 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888877776666544444444433
No 59
>PLN03205 ATR interacting protein; Provisional
Probab=30.82 E-value=3.9e+02 Score=32.03 Aligned_cols=122 Identities=18% Similarity=0.355 Sum_probs=72.5
Q ss_pred cccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccccccchhHHHHHHHHHHhhcCCC-CHHHHHHH
Q 000796 576 SQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSE-NLSIAIFA 654 (1280)
Q Consensus 576 S~~L~~eAi~~fv~ALc~vS~eel~s~~~pr~FsLqKLveVa~~Nm~Rirl~W~~iW~~L~~hf~~vg~~~-n~~va~~A 654 (1280)
+...+-+++++-+--||.+-...+-+ ...=.|-.+.+=..-|..|+.--|..=|-.|-+..++++... ...|+.-|
T Consensus 316 ~G~V~lqtLlEaLLdLC~v~n~a~V~---RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEA 392 (652)
T PLN03205 316 YGFVNLKSLVEPLLDLCKAETAVLVH---RSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEA 392 (652)
T ss_pred CCeeeHHHHHHHHHHHHhcCchhhhH---HHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeeh
Confidence 45555555555555555554433321 112235566666778888999999999999999888887543 45788888
Q ss_pred HHHHHHHHHH---hhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHH
Q 000796 655 MDSLRQLSMK---FLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCV 704 (1280)
Q Consensus 655 vdsLrqL~~k---fLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl 704 (1280)
+....-+.|+ +.++| .|. |..++.....++++..-.-|+...+.-+
T Consensus 393 vSIMnVIlmssna~~eRE---kFG-~~~VfESiaQLLkkEaGl~VqKealhLL 441 (652)
T PLN03205 393 LSIMNIIVMSTDAYTARE---SFV-SKEVFESISLLLRKEGGLHVRKEAIHLF 441 (652)
T ss_pred hhhhHHhhhccchhHHHH---Hhc-chHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 8777766665 44554 333 3444444444444443334444444433
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=30.62 E-value=84 Score=26.22 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 000796 936 CTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVR 986 (1280)
Q Consensus 936 ~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ 986 (1280)
...|+..++.+-....+.+.+++++++..|..++..+++.+...++.+|.+
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 344555565544455666777899999999999998888887777777754
No 61
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=29.87 E-value=1.2e+03 Score=29.25 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccc-cCcHHHHHH
Q 000796 647 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-SGWKSMFMV 725 (1280)
Q Consensus 647 n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~Ik-SGW~~IF~i 725 (1280)
+......+++.|+.+.. -+...++ ...+ .|+....-.++++.||.+++..|..++........ -.=..++..
T Consensus 51 ~~e~v~~~~~iL~~~l~-~~~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 51 NREQVELICDILKRLLS-ALSPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred ChHHHHHHHHHHHHHHh-ccCHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 44444566677765432 2222222 1111 23333333467889999999999998866543211 011123434
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHhhcc--CcccccccccHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHhhhcccc
Q 000796 726 FTTAAYDDHKNIVLLAFEIIEKIIRDYF--PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 803 (1280)
Q Consensus 726 L~~aa~~~~~~lV~~aF~~l~~I~~d~l--~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~~L~~~~~~l~~~~~ 803 (1280)
+-.+-.+++..+...|-.++..+.+... ..+. ... .+..|.....+..+ .+-+...+++-.++..
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~---~~~---~~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~------ 190 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF---DSN---LLSKLKSLMSQSSD-IVRCRVYELLVEIASH------ 190 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh---Ccc---hHHHHHHHHhccCH-HHHHHHHHHHHHHHhc------
Confidence 4344456778888999999988875321 1111 011 14455555544222 2333444333222110
Q ss_pred cccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHH--HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCC
Q 000796 804 SASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWF--PLLAGLSELSFDPRPEIRKSALQVLFETLRNHGH 881 (1280)
Q Consensus 804 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~--pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~ 881 (1280)
+. +....+. .+|..+-+...+++.=||-.|+++|-++-.+.
T Consensus 191 ----------------------------------S~-~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-- 233 (503)
T PF10508_consen 191 ----------------------------------SP-EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-- 233 (503)
T ss_pred ----------------------------------CH-HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh--
Confidence 00 0111111 15555555556688889999999999987722
Q ss_pred CCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 000796 882 LFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKV 961 (1280)
Q Consensus 882 ~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~ 961 (1280)
+-.+.+.+.=+++.+..+...... ++....-+ ..-.++..+.++...-..+...++.+
T Consensus 234 ----~g~~yL~~~gi~~~L~~~l~~~~~---------------dp~~~~~~---l~g~~~f~g~la~~~~~~v~~~~p~~ 291 (503)
T PF10508_consen 234 ----HGLQYLEQQGIFDKLSNLLQDSEE---------------DPRLSSLL---LPGRMKFFGNLARVSPQEVLELYPAF 291 (503)
T ss_pred ----hHHHHHHhCCHHHHHHHHHhcccc---------------CCcccchh---hhhHHHHHHHHHhcChHHHHHHHHHH
Confidence 234556666566666655443221 11000000 01111333333332222333456777
Q ss_pred HHHHHHhhcccchhHHHHHHHHH
Q 000796 962 LMLLVSFIKRPHQSLAGIGIAAF 984 (1280)
Q Consensus 962 l~lL~~~i~q~~e~la~~g~~~l 984 (1280)
+..|..++...+.+...++..+|
T Consensus 292 ~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 292 LERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHHhCCCChhHHHHHHHHH
Confidence 77777888877766555555555
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=27.98 E-value=1.3e+02 Score=27.23 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHccccccccCcHHHH
Q 000796 644 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 723 (1280)
Q Consensus 644 ~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~~IkSGW~~IF 723 (1280)
.+++..++..|+..|.++. ..+.+.++...+ ...++.||..++..+.++ |.+-++
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--------------DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC--------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 4778999999988876321 123445555555 568899999999999865 345555
Q ss_pred HHHHHhhcCCchhHHH
Q 000796 724 MVFTTAAYDDHKNIVL 739 (1280)
Q Consensus 724 ~iL~~aa~~~~~~lV~ 739 (1280)
..|.....++....|+
T Consensus 65 ~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVR 80 (88)
T ss_dssp HHHHHHHTC-SSHHHH
T ss_pred HHHHHHHcCCCcHHHH
Confidence 5555555444444443
No 63
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=2.4e+02 Score=32.96 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCCCCCH
Q 000796 928 QDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSD 997 (1280)
Q Consensus 928 ~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~~ 997 (1280)
.+.| +-.+-+|..|..|-..+.+.+.++|.++.-.++.-++....+++|.+|-|+-.+....+.++.+
T Consensus 99 s~dW--~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 99 SDDW--EDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred hHHH--HHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568 6778899999999888889999999999999999999999999999999998888887777754
No 64
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.01 E-value=2.9e+02 Score=28.04 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhhhhhhhhHHHHHhcCCh-HHHHHHHHHHHHH
Q 000796 645 SENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSNA-VEIRELIIRCVSQ 706 (1280)
Q Consensus 645 ~~n~~va~~AvdsLrqL~~kfLe--~eEL~~f~fQ~~fL~Pfe~im~~~~~-~eire~iL~cl~~ 706 (1280)
|+|+.+..+|+..|..+...--. ..|++. ++|+..+..+...... ..|++.+++.+.+
T Consensus 48 ~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s----~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 48 NKNPHVALLALTLLDACVKNCGSKFHLEVAS----KEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 68899999998887765421111 123332 4566666666655443 3488888888763
No 65
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.56 E-value=1e+03 Score=27.38 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCC-C---CCHhHHHHHHHHhHHHHHHHh
Q 000796 842 HLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGH-L---FSLPLWERVFDSVLFPIFDYV 903 (1280)
Q Consensus 842 ~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~-~---f~~~~W~~if~~VLfPif~~l 903 (1280)
..+.|-.++=.+-.++-|..+++|-.+++.|-.++..-.. . |...-...+|...|+|.+-.+
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~L 178 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYL 178 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcC
Confidence 4466766777777788899999999999999999984432 2 222233444555555555544
No 66
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.98 E-value=2.2e+02 Score=23.97 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 000796 1068 RAAVQLLLIQAVMEIYNMYRPCLSAKNTLVLFEALHDIAYHA 1109 (1280)
Q Consensus 1068 kcvlQLllIq~~~el~~~~~~~l~~~~l~~Ll~~L~~s~~fA 1109 (1280)
+|.+-..|.++++|+... ..|+++...+++..+.+|...|
T Consensus 8 ~stlG~aL~dtLDeli~~--~~I~p~La~kVL~~FDksi~~~ 47 (49)
T PF02268_consen 8 RSTLGIALTDTLDELIQE--GKITPQLAMKVLEQFDKSINEA 47 (49)
T ss_dssp CSHHHHHHHHHHHHHHHT--TSS-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Confidence 456667789999999987 7999999999999999998654
No 67
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=22.27 E-value=1.5e+03 Score=27.87 Aligned_cols=223 Identities=12% Similarity=0.193 Sum_probs=106.2
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHhhcc-CcccccccccHHHHHHHHHHHHcCCCCccccHHHHH-HHHHHHHhhhc
Q 000796 723 FMVFTTAAYDDHKNIVLLAFEIIEKIIRDYF-PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA-FLRFCATKLAE 800 (1280)
Q Consensus 723 F~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l-~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~-~L~~~~~~l~~ 800 (1280)
|.+|...-..+-.+.+.-+|+++..+++-+- +.++ +.|..+..+|..=.--....|| .|+- +|.. ++..
T Consensus 119 ~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gni--PalvrLL~a---~i~k 189 (435)
T PF03378_consen 119 FPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNI--PALVRLLQA---YIKK 189 (435)
T ss_dssp HHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTH--HHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCc--CcHHHHHHH---HHHh
Confidence 3333333333445678888999988887765 3443 5676766666543222222233 5543 3322 1111
Q ss_pred ccccccCCCchhhhcccCCCCCCCchhhhhhccCcCCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcC
Q 000796 801 GDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG 880 (1280)
Q Consensus 801 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G 880 (1280)
+.- .+... .---++|.-+.+++.....| ..|...|-.++.
T Consensus 190 ~~~-------------------------------~i~~~----~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~--- 229 (435)
T PF03378_consen 190 DPS-------------------------------FIVAN----NQLEPILGVFQKLIASKAND--HYGFDLLESIVE--- 229 (435)
T ss_dssp HGG-------------------------------G--------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHH---
T ss_pred Cch-------------------------------hhcch----hhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHH---
Confidence 100 00000 01125777777777655444 345544444444
Q ss_pred CCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHhH-HHH
Q 000796 881 HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP-LLR 959 (1280)
Q Consensus 881 ~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~-~l~ 959 (1280)
.++.+.++..+..|+--+|..++.... ..-.+....-=+..+.+.=.+.+.+..+.+.+ ++.
T Consensus 230 -~~p~~~l~~yl~~I~~lll~RLq~skT----------------~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~ 292 (435)
T PF03378_consen 230 -NLPPEALEPYLKQIFTLLLTRLQSSKT----------------EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFG 292 (435)
T ss_dssp -HS-HHHHGGGHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHH
T ss_pred -HCCHHHHHHHHHHHHHHHHHHHhhCCc----------------HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHH
Confidence 456777777777777778888765200 01111111111233333334444455555553 333
Q ss_pred HHHH----HHHHhhcccchhHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHh
Q 000796 960 KVLM----LLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFS--DEKWLEVAESLKEAAKA 1013 (1280)
Q Consensus 960 ~~l~----lL~~~i~q~~e~la~~g~~~l~~ll~~~g~~f~--~~~W~~i~~~l~~l~~~ 1013 (1280)
.+|. =-...+....|. +++.=.+..|+.......+ .+.|-.++.++.++++.
T Consensus 293 ~il~~v~lp~~~k~~~~~er--Ki~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~ 350 (435)
T PF03378_consen 293 MILEKVWLPDLQKVSGPIER--KICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLER 350 (435)
T ss_dssp HHHHHTHHHHGGG--SHHHH--HHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCchhhcCCcchh--hHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcC
Confidence 3333 223344444442 3344445555544322222 36899999999999985
No 68
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.06 E-value=1.7e+03 Score=28.19 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=49.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHcc
Q 000796 638 FFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 711 (1280)
Q Consensus 638 hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~ 711 (1280)
.|+....+++..|+..|+=+|..++- +...+.++......+.|+-.++..+...-++..+.-+|.++...+
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIag---ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAG---DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcccc---CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 37777778888998888888877662 335566677777788888887766554456666777777766444
No 69
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.91 E-value=1.1e+03 Score=30.82 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=57.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 000796 858 FDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCT 937 (1280)
Q Consensus 858 ~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~eT~~ 937 (1280)
.-+..+||..|...||+.+---|.....+.-+.+.+.-. ..+..+....-+ .-..
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf-~~l~~LL~d~~p------------------------~VRS 238 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQF-EELYSLLEDPYP------------------------MVRS 238 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHH-HHHHHHhcCCCc------------------------hHHH
Confidence 346689999999999999998898888888888887654 444444432111 1234
Q ss_pred HHHHHHHHHHHHHHHhHhH-HHHHHHHH
Q 000796 938 LALQLVVDLFVKFYNTVNP-LLRKVLML 964 (1280)
Q Consensus 938 laL~~l~~Lf~~yf~~l~~-~l~~~l~l 964 (1280)
.|..|++++|..|...+-+ .+.+++.-
T Consensus 239 ~a~~gv~k~~s~fWe~iP~~i~~~ll~k 266 (1005)
T KOG1949|consen 239 TAILGVCKITSKFWEMIPPTILIDLLKK 266 (1005)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5888999999999987654 33333333
No 70
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=21.87 E-value=1.6e+03 Score=28.07 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=43.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHcc
Q 000796 638 FFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 711 (1280)
Q Consensus 638 hf~~vg~~~n~~va~~AvdsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~ 711 (1280)
++...-.+++..|+..|+..|..++..-...+. -|....+.-+..+|.+ ++..+|-.+++++.++-...
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~----l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ----LFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH----HhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcC
Confidence 344445678899999999999988742221122 2333445556666654 35678888888887775443
No 71
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=21.42 E-value=4.9e+02 Score=35.90 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=64.6
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcCCCCCHhHHHHHHHHhHHHHHHHhhh-hcCCCCCCCCCCCCCCCCCc
Q 000796 847 FPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRH-TIDPSGENSPGQGVDGDTGE 925 (1280)
Q Consensus 847 ~pLL~~L~~l~~d~R~eVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPif~~l~~-~~~~~~~~~~~~~~~~~s~~ 925 (1280)
.-.+..|.+-..+++-|+|.+|--.+++|++.||..++...-+.++- .++-.+.. +...- + +
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~----rll~v~~Ldrf~df--------i---s-- 138 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLI----RLLCVLALDRFGDF--------I---S-- 138 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHH----HHHHHHHHHHhccc--------c---c--
Confidence 34666677777889999999999999999999999998866555544 33332221 10100 0 0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhccc
Q 000796 926 LDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRP 972 (1280)
Q Consensus 926 ~~~~~W~~eT~~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~ 972 (1280)
...-.=+.|+|.+||..+.+. ....+....|+++.....|+
T Consensus 139 d~vvapVre~caq~L~~~l~~------~~~s~~~~~~~il~q~~~q~ 179 (1549)
T KOG0392|consen 139 DNVVAPVREACAQALGAYLKH------MDESLIKETLDILLQMLRQP 179 (1549)
T ss_pred ccchhhhHHHHHHHHHHHHHh------hhhHhhHHHHHHHHHHHcCc
Confidence 011112458888888866542 22345666677766666665
No 72
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=21.39 E-value=8.1e+02 Score=31.06 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhchhhh------------hhhhhhhhhhhhHHHHHhcCChHHHHHHHHHHHHHHHHcccc-cccc
Q 000796 651 AIFAMDSLRQLSMKFLEREEL------------ANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-NVKS 717 (1280)
Q Consensus 651 a~~AvdsLrqL~~kfLe~eEL------------~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~mi~~~~~-~IkS 717 (1280)
-.-|||.+|.|+.+|-.+... ..|.|-+........+|.. .++.||.+|+.++..|+.|-- .|.
T Consensus 392 KiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~I~- 468 (898)
T COG5240 392 KIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQIT- 468 (898)
T ss_pred eEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhHHH-
Confidence 345788888888766432210 2345555544444555543 468999999999999988742 221
Q ss_pred CcHHHHHHHHHhh-cCCch-hHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHcCCCCccccHHHHH-HHHHH
Q 000796 718 GWKSMFMVFTTAA-YDDHK-NIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA-FLRFC 794 (1280)
Q Consensus 718 GW~~IF~iL~~aa-~~~~~-~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~cL~~F~~~~~~~niSL~Ai~-~L~~~ 794 (1280)
--|++||..-. +.+.| .-|+.-+.- |+-+. .+ .-.-.|.||++|+-+..| .++-+++. .|+.|
T Consensus 469 --vrIL~iLG~EgP~a~~P~~yvrhIyNR---~iLEN--~i------vRsaAv~aLskf~ln~~d-~~~~~sv~~~lkRc 534 (898)
T COG5240 469 --VRILGILGREGPRAKTPGKYVRHIYNR---LILEN--NI------VRSAAVQALSKFALNISD-VVSPQSVENALKRC 534 (898)
T ss_pred --HHHHHHhcccCCCCCCcchHHHHHHHH---HHHhh--hH------HHHHHHHHHHHhccCccc-cccHHHHHHHHHHH
Confidence 11344443211 11122 234433322 22111 11 124568899999988776 45555554 45555
Q ss_pred H
Q 000796 795 A 795 (1280)
Q Consensus 795 ~ 795 (1280)
.
T Consensus 535 l 535 (898)
T COG5240 535 L 535 (898)
T ss_pred h
Confidence 4
No 73
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.81 E-value=5.2e+02 Score=26.37 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhhhhhhhhHHHHHhcC-ChHH--HHHHHHHHHH
Q 000796 645 SENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKS-NAVE--IRELIIRCVS 705 (1280)
Q Consensus 645 ~~n~~va~~AvdsLrqL~~kfLe--~eEL~~f~fQ~~fL~Pfe~im~~~-~~~e--ire~iL~cl~ 705 (1280)
|+|+.+..+|+..|..+..---+ ..|++. ++|+.-+..+.... .... ||+.+++.|.
T Consensus 53 ~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~----~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 53 HGNPNVQLLALTLLDALVKNCGPRFHREVAS----KEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp TSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS----HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH----HHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 57899999998777655421100 122222 34666666544443 3444 9999998887
No 74
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=20.59 E-value=5.6e+02 Score=25.00 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCC
Q 000796 937 TLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGN 993 (1280)
Q Consensus 937 ~laL~~l~~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g~ 993 (1280)
..+++++..+..--=..+....+++...|...+..+ .+...+.+|+..|+.....
T Consensus 33 ~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 33 KRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 445555555544222345556678888888887775 7888899999888875443
No 75
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=20.42 E-value=5.9e+02 Score=29.85 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHH
Q 000796 933 YETCTLALQLVVDLFVKFY--NTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG-NLFSDEKWLEVAESLKE 1009 (1280)
Q Consensus 933 ~eT~~laL~~l~~Lf~~yf--~~l~~~l~~~l~lL~~~i~q~~e~la~~g~~~l~~ll~~~g-~~f~~~~W~~i~~~l~~ 1009 (1280)
..|+..||.+++++|.+++ +.+......+++.+..|++++...=...+..++.-|.++.| ..=.++.++.+...|.+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q ss_pred HHH
Q 000796 1010 AAK 1012 (1280)
Q Consensus 1010 l~~ 1012 (1280)
+..
T Consensus 137 ~l~ 139 (309)
T PF05004_consen 137 ILT 139 (309)
T ss_pred HHh
Done!