Query 000796
Match_columns 1280
No_of_seqs 359 out of 1101
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:28:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000796.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_567-571//hhsearch_pdb/000796hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 487.7 20.1 198 105-302 10-209 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 482.4 20.7 195 108-302 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 471.9 19.0 198 103-302 13-227 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 454.6 18.6 193 112-304 6-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 451.1 21.4 192 111-302 12-203 (347)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 46.9 36.8 288 633-995 368-674 (861)
7 1ibr_B P95, importin beta-1 su 1.0 1 1 46.1 19.1 305 627-995 125-443 (462)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 43.3 41.1 318 606-996 338-665 (852)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 42.0 22.1 106 849-991 857-962 (1230)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 42.0 39.3 109 637-749 403-511 (852)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=487.67 Aligned_cols=198 Identities=52% Similarity=0.899 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 79999999479999999998159045599999829999999999999870489872324101345775119999999852
Q 000796 105 STIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDS 184 (1280)
Q Consensus 105 ~~~e~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~ 184 (1280)
.+||+.|++|..+++|+.+||.|||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 899998868999998624878985599999999999999660999--989921899999999874211489533699998
Q 000796 185 FDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK--VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSA 262 (1280)
Q Consensus 185 ~df~~~~~~~alR~fl~~f~LpgE~q~idri~~~Fa~~y~~~Np~--~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~ 262 (1280)
|||+|+++|+|||.||.+||||||+|+|||||++||+|||+|||+ +|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 8788731378899999499999999997707566568622
Q 000796 263 DDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 302 (1280)
Q Consensus 263 ~~Fi~n~~~~~~~~~~~~~~L~~iY~~i~~~~i~~~~~~~ 302 (1280)
++||+|+||+|+|+|+|+++|++||++|+++||+++++..
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999986543678999999999999999848762789988
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=482.45 Aligned_cols=195 Identities=54% Similarity=0.907 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999479999999998159045599999829999999999999870489872324101345775119999999852899
Q 000796 108 EQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDF 187 (1280)
Q Consensus 108 e~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df 187 (1280)
++.|++|..+.+|+.+||.+||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 99886899999862487898559999999999999966099998992189999999987421148953369999887887
Q 000796 188 QRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIR 267 (1280)
Q Consensus 188 ~~~~~~~alR~fl~~f~LpgE~q~idri~~~Fa~~y~~~Np~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~ 267 (1280)
+|+++|+|||.||.+||||||+|+|||+|++||+|||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 31378899999499999999997707566568622
Q 000796 268 NNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 302 (1280)
Q Consensus 268 n~~~~~~~~~~~~~~L~~iY~~i~~~~i~~~~~~~ 302 (1280)
|+||+|+|+|+|+++|++||++|+.+||++++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=471.89 Aligned_cols=198 Identities=39% Similarity=0.644 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHC-CCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 93799999994799999999981590455999998299999-999999998704-8987232410134577511999999
Q 000796 103 DVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN-TPEEIAAFLKNA-SDLNKTLIGDYLGEREELPLKVMHA 180 (1280)
Q Consensus 103 ~~~~~e~~k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~p~~ia~fl~~~-~~l~k~~igeyLg~~~~~~~~vl~~ 180 (1280)
...+++++|++|..+.+|+.+||++||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ |.+||++
T Consensus 13 ~~~~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~ 90 (230)
T 1ku1_A 13 GLVPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNE 90 (230)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHH
T ss_conf 18699999999999999999995499999999998898389998999999997276569999999980821--7999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHH
Q ss_conf 985289999886899999862487898559999999999999966099---------------99899218999999998
Q 000796 181 YVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP---------------KVFTSADTAYVLAYSVI 245 (1280)
Q Consensus 181 y~~~~df~~~~~~~alR~fl~~f~LpgE~q~idri~~~Fa~~y~~~Np---------------~~f~~~d~~y~l~~sii 245 (1280)
|++.|||+|+++|+|||.||.+||||||+|+|||||++||+|||+||| ++|.++|+||+|+||+|
T Consensus 91 yv~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiI 170 (230)
T 1ku1_A 91 YIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSII 170 (230)
T ss_dssp HHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98542679997999999999808588519999999999999999818777532101001122345577028999999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 742114895336999988788731378899999499999999997707566568622
Q 000796 246 LLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 302 (1280)
Q Consensus 246 mLntdlhn~~~k~kmt~~~Fi~n~~~~~~~~~~~~~~L~~iY~~i~~~~i~~~~~~~ 302 (1280)
|||||+|||++|+|||+++||+|+||+|+|+|+|+++|++||++|+++||+|++++.
T Consensus 171 mLNTDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~ 227 (230)
T 1ku1_A 171 MLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH 227 (230)
T ss_dssp HHHHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 980130264346777799999986465677888899999999999848346886677
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=454.57 Aligned_cols=193 Identities=37% Similarity=0.613 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHH-CCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 94799999999981590455999998299--99999999999870-4898723241013457751199999998528999
Q 000796 112 AYKLELQEGISLFNRKPKKGIEFLINAKK--VGNTPEEIAAFLKN-ASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQ 188 (1280)
Q Consensus 112 ~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~--~~~~p~~ia~fl~~-~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~ 188 (1280)
+.|+.+.+|+.+||.+||+||+||++.+. ..++|++||+||+. +++|||++||||||+++++|.+||++|++.|||+
T Consensus 6 e~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~ 85 (356)
T 1xsz_A 6 EIEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFN 85 (356)
T ss_dssp HHHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999981599999999998600158999999999998458788999999998578457899999999966979
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCHHHHH
Q ss_conf 988689999986248789855999999999999996609999899218999999998742114895336--999988788
Q 000796 189 RMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVK--NKMSADDFI 266 (1280)
Q Consensus 189 ~~~~~~alR~fl~~f~LpgE~q~idri~~~Fa~~y~~~Np~~f~~~d~~y~l~~siimLntdlhn~~~k--~kmt~~~Fi 266 (1280)
|+++|+|||.||.+||||||+|+|||+|++||+|||+|||+.|.++|+||+|+||+||||||+|||++| +|||+++||
T Consensus 86 g~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFi 165 (356)
T 1xsz_A 86 GQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLK 165 (356)
T ss_dssp TSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99899999999982848850889999999999999973998668743899999999986210038655545789899999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 73137889999949999999999770756656862268
Q 000796 267 RNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAV 304 (1280)
Q Consensus 267 ~n~~~~~~~~~~~~~~L~~iY~~i~~~~i~~~~~~~~~ 304 (1280)
+|+||+|+|+|+|+++|++||++|+.+||++......+
T Consensus 166 kN~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 166 RNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp HHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98544468788989999999999970877557755686
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=451.06 Aligned_cols=192 Identities=50% Similarity=0.880 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99479999999998159045599999829999999999999870489872324101345775119999999852899998
Q 000796 111 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRM 190 (1280)
Q Consensus 111 k~~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyLg~~~~~~~~vl~~y~~~~df~~~ 190 (1280)
|++|..+.+|+.+||.+|++||+||++.|+++++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 86899999862487898559999999999999966099998992189999999987421148953369999887887313
Q 000796 191 EFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 270 (1280)
Q Consensus 191 ~~~~alR~fl~~f~LpgE~q~idri~~~Fa~~y~~~Np~~f~~~d~~y~l~~siimLntdlhn~~~k~kmt~~~Fi~n~~ 270 (1280)
+||+|||.||.+|+||||+|+|||||++||+|||+|||++|.++|++|+|+||+||||||+|||++|+|||+++||+|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 78899999499999999997707566568622
Q 000796 271 GIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 302 (1280)
Q Consensus 271 ~~~~~~~~~~~~L~~iY~~i~~~~i~~~~~~~ 302 (1280)
|+|+|+|+|+++|+.+|++|+.+|+.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=46.87 Aligned_cols=288 Identities=9% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998503787787999999999999998401565421002333243699998207738999999999999997000
Q 000796 633 HVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV 712 (1280)
Q Consensus 633 ~~L~~hf~~v~~~~n~~va~~AidsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~li~~~~ 712 (1280)
..+.+++.....+++..++.-|+..|..++. ....+.+. .+-..++..+.. ....++..||..++.++.++....+
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~-~~~~~~~~--~~l~~il~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMD-GPDKVQRT--YYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS-SSCHHHHH--HHHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCHHHHH--HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999987579972699999999999985-99878889--989999999998-8289959999999999999998735
Q ss_pred CCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCH
Q ss_conf 124--55818999999774117724689999999999995006----86543420209999999999880778-824438
Q 000796 713 NNV--KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYF----PYITETETTTFTDCVNCLIAFTNSRF-NKDISL 785 (1280)
Q Consensus 713 ~~I--kSGW~~IF~iL~~aa~~~~~~iv~~aF~~l~~I~~d~l----~~l~~~~~~~f~dlV~cL~~F~~~~~-~~niSL 785 (1280)
..+ ..-...++..+-....+. +.+-..+..++..++...- ..+ ...+..++..|........ +.++-.
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l----~~~~~~il~~L~~~l~~~d~~~~vr~ 518 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI----YNFYPALVDGLIGAANRIDNEFNARA 518 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG----GGGHHHHHHHHHHHHTCSCCGGGHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 40487888999999999976447-28999999999999986231354246----89999999999999857586158999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHC-------
Q ss_conf 999999998786210433436777102100369999999500221003767782111-254999999886311-------
Q 000796 786 NAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDH-LYFWFPLLAGLSELS------- 857 (1280)
Q Consensus 786 ~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~lW~pLL~~L~~l~------- 857 (1280)
.++..+..++..... . ...+ ..++-+++..|.+..
T Consensus 519 ~a~~al~~l~~~~~~----------------------------------~---~~~~~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 519 SAFSALTTMVEYATD----------------------------------T---VAETSASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHHHHHHHHHHCCG----------------------------------G---GHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHHHHHHCCH----------------------------------H---HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999997626----------------------------------5---699999999999999998875320138
Q ss_pred C----CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7----994788999999999999851799997689999999689789984410399999999988889998601462899
Q 000796 858 F----DPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLY 933 (1280)
Q Consensus 858 ~----d~R~EVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPil~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~~ 933 (1280)
. +...++|..++++|-.++...|..+.+ +-.. ++|.+-.+... . +.+ . ..
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~-----l~~~l~~~l~~--~---------------~~~-~--v~ 615 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADM-----LMGLFFRLLEK--K---------------DSA-F--IE 615 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHH-----HHHHHHHHHHS--T---------------TGG-G--TH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHCC--C---------------CCC-C--HH
T ss_conf 85567779999999999999999985563478-9999-----99999999746--7---------------887-5--79
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998876768899999999983606603588999999999999508999
Q 000796 934 ETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLF 995 (1280)
Q Consensus 934 eT~~laL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~~~~f 995 (1280)
+....++..+++.+ -..+.+.++.++..|..++...+..+...+..++..+....|..|
T Consensus 616 ~~~~~~l~~l~~~~---~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 616 DDVFYAISALAASL---GKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp HHHHHHHHHHHHHH---GGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHC
T ss_conf 99999999999997---660999999999999988655667899999999999998745403
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=46.09 Aligned_cols=305 Identities=13% Similarity=0.152 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
Q ss_conf 30237999999998503787--7879999999999999984015654210023332436999982077-38999999999
Q 000796 627 VWSSIWHVLSDFFVNIGCSE--NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSN-AVEIRELIIRC 703 (1280)
Q Consensus 627 ~W~~iW~~L~~hf~~v~~~~--n~~va~~AidsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~-~~eire~iL~c 703 (1280)
.|+.+-..+... ..++ +..++..|+..|+.++-++-. +.+. .+-..++..|...+.... +.+||...++|
T Consensus 125 ~w~~ll~~L~~~----l~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~ 197 (462)
T 1ibr_B 125 QWPELIPQLVAN----VTNPNSTEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNA 197 (462)
T ss_dssp CCTTHHHHHHHH----HHCTTCCHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 269999999998----626788789999999999999981871-5347--679999999999867999989999999999
Q ss_pred HHHHHHCCCCCCCCCC---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHCCCC
Q ss_conf 9999970001245581---8999999774117724689999999999995006865434202099-99999999880778
Q 000796 704 VSQMVLSRVNNVKSGW---KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFT-DCVNCLIAFTNSRF 779 (1280)
Q Consensus 704 l~~li~~~~~~IkSGW---~~IF~iL~~aa~~~~~~iv~~aF~~l~~I~~d~l~~l~~~~~~~f~-dlV~cL~~F~~~~~ 779 (1280)
+..++.....+. ..| ..+..++.....+.++.+-..+++++..++..+...+. ..+. .++..+....+ ..
T Consensus 198 l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~~~~l~~~~~~~~~-~~ 271 (462)
T 1ibr_B 198 LLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME----TYMGPALFAITIEAMK-SD 271 (462)
T ss_dssp HHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT----TTTTTTHHHHHHHHHH-CS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC-CC
T ss_conf 999999999843-23678989999999853799789999999999999999899999----8888899999999982-88
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC-CCCCCCCHHHHHHCCCCCCCC-CHHHHHHHHHHHH-HHHH
Q ss_conf 824438999999998786210433436777102100369-999999500221003767782-1112549999998-8631
Q 000796 780 NKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKI-PPASPRPVKELKLENGEMIDK-DDHLYFWFPLLAG-LSEL 856 (1280)
Q Consensus 780 ~~niSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~-~~~~~lW~pLL~~-L~~l 856 (1280)
+.++...|++++..++....+... ..... .+..+. ......- ..+..-.+|.+.. |.+.
T Consensus 272 ~~~v~~~a~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~p~l~~~l~~~ 333 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDEEMDLAI----------EASEAAEQGRPP--------EHTSKFYAKGALQYLVPILTQTLTKQ 333 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH----------HHCCTTCSSSCS--------SCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----------HCCCCCCCCCCC--------CCHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 609999999999999998887887----------601000037886--------30359999987664007999998744
Q ss_pred C---CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-H
Q ss_conf 1---79947889999999999998517999976899999996897899844103999999999888899986014628-9
Q 000796 857 S---FDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAW-L 932 (1280)
Q Consensus 857 ~---~d~R~EVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPil~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W-~ 932 (1280)
- .|....+|..|...|-.+....|. .++. .++|.+..... +. .| .
T Consensus 334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~--------~~~~-~~~~~l~~~l~-------------------~~---~~~~ 382 (462)
T 1ibr_B 334 DENDDDDDWNPCKAAGVCLMLLATCCED--------DIVP-HVLPFIKEHIK-------------------NP---DWRY 382 (462)
T ss_dssp CSSCCTTCCSHHHHHHHHHHHHHHHTTT--------THHH-HHHHHHHHHTT-------------------CS---SHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCH--------HHHH-HHHHHHHHHHC-------------------CC---CHHH
T ss_conf 4444444332889999999999986358--------7899-99999999843-------------------89---7589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999998876768899999999983606603588999999999999508999
Q 000796 933 YETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLF 995 (1280)
Q Consensus 933 ~eT~~laL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~~~~f 995 (1280)
.++...++..+++-.. -+.+...++.++..+..++..++..+...++.++.++....++.+
T Consensus 383 r~aal~~l~~l~~~~~--~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPE--PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (462)
T ss_dssp HHHHHHHHHHTSSSSC--TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999864876--777898899999999999669978999999999999998620114
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=43.35 Aligned_cols=318 Identities=11% Similarity=0.118 Sum_probs=166.7
Q ss_pred CEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 60059999999841223321330237999999998503787787999999999999998401565421002333243699
Q 000796 606 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 685 (1280)
Q Consensus 606 r~FsLqKLveI~~~Nm~Rirl~W~~iW~~L~~hf~~v~~~~n~~va~~AidsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe 685 (1280)
|.-+..-|..++...-. .+-..+.+++...-.+++..++.-|+..|..++...- +.+. .+-..++..+.
T Consensus 338 r~~a~~~L~~la~~~~~-------~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--~~~~--~~l~~~l~~l~ 406 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRD-------ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMI--PYLPELIPHLI 406 (852)
T ss_dssp HHHHHHHHHHHHHHHGG-------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH--HHHG--GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH--HHHH--HHHHHHHHHHH
T ss_conf 99999999999874618-------7899999999998559988999999999999986356--8899--87999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 998207738999999999999997000124-5581899999977411772468999999999999500686543420209
Q 000796 686 IVMRKSNAVEIRELIIRCVSQMVLSRVNNV-KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTF 764 (1280)
Q Consensus 686 ~im~~~~~~eire~iL~cl~~li~~~~~~I-kSGW~~IF~iL~~aa~~~~~~iv~~aF~~l~~I~~d~l~~l~~~~~~~f 764 (1280)
..+ ..++..||..+..++.++-...+... ..--..++..+-....+.++.+-..|...+..++...-..+ ...+
T Consensus 407 ~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l----~~~l 481 (852)
T 4fdd_A 407 QCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL----VPYL 481 (852)
T ss_dssp HHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG----GGGH
T ss_pred HHC-CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_conf 871-79988999999999999998861104789999999999999858988899999999999999736766----7679
Q ss_pred HHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 999999999880778824--438999999998786210433436777102100369999999500221003767782111
Q 000796 765 TDCVNCLIAFTNSRFNKD--ISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDH 842 (1280)
Q Consensus 765 ~dlV~cL~~F~~~~~~~n--iSL~Ai~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1280)
..++..|....+.....+ +.+.+++. +++.+.. .+ .+..+
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~---l~~~~~~----------------------------------~~-~~~~~ 523 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGT---LADSVGH----------------------------------HL-NKPEY 523 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHHGG----------------------------------GG-CCHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHH---HHHHHHH----------------------------------HH-CCHHH
T ss_conf 9999999999988374799999999999---9997424----------------------------------31-36789
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHH----HCCCCCCCCCCC
Q ss_conf 254999999886311799478899999999999985179999768999999968978998-441----039999999998
Q 000796 843 LYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDY-VRH----TIDPSGENSPGQ 917 (1280)
Q Consensus 843 ~~lW~pLL~~L~~l~~d~R~EVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPil~~-l~~----~~~~~~~~~~~~ 917 (1280)
....+|.|...-....|+.+++| .+++++-.+....|..|.+. =..++..++ .++.. +.. ...+....
T Consensus 524 ~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-~~~i~~~~~-~~l~~~l~~~~~~~~~~~~~~---- 596 (852)
T 4fdd_A 524 IQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY-CEPVYQRCV-NLVQKTLAQAMLNNAQPDQYE---- 596 (852)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-HHHHHHHHH-HHHHHHHHHHHHHHHCTTTSC----
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHCCCCCCC----
T ss_conf 99988999999873330469999-99999999999974867988-999999999-999999999987533886668----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88899986014628999999999999999999887676889--9999999983606603588999999999999508999
Q 000796 918 GVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLL--RKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLF 995 (1280)
Q Consensus 918 ~~~~~s~~~~~~~W~~eT~~laL~~lv~Lf~~yf~~l~~~l--~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~~~~f 995 (1280)
.++. . ...+...++.++++-+ -..+.+.+ +.++.++..|+...+..+...+..++..+....+..|
T Consensus 597 -------~~d~-~-~~~~~l~~l~~l~~~l---~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 664 (852)
T 4fdd_A 597 -------APDK-D-FMIVALDLLSGLAEGL---GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV 664 (852)
T ss_dssp -------CCCT-H-HHHHHHHHHHHHHHHH---GGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred -------CCCC-H-HHHHHHHHHHHHHHHH---HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------8761-1-9999999997899987---47699883677189999998389984499999999999999816888
Q ss_pred C
Q ss_conf 9
Q 000796 996 S 996 (1280)
Q Consensus 996 ~ 996 (1280)
.
T Consensus 665 ~ 665 (852)
T 4fdd_A 665 K 665 (852)
T ss_dssp G
T ss_pred H
T ss_conf 9
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=42.01 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99988631179947889999999999998517999976899999996897899844103999999999888899986014
Q 000796 849 LLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQ 928 (1280)
Q Consensus 849 LL~~L~~l~~d~R~EVR~~Al~tLF~iL~~~G~~f~~~~W~~if~~VLfPil~~l~~~~~~~~~~~~~~~~~~~s~~~~~ 928 (1280)
+...+.....|+-.+||..|...|=.+... .+. .++-.++..+.. ..+.
T Consensus 857 l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~--------~~~----~~lp~ll~~l~~-------------------~~~~ 905 (1230)
T 1u6g_C 857 LKSVILEAFSSPSEEVKSAASYALGSISVG--------NLP----EYLPFVLQEITS-------------------QPKR 905 (1230)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--------THH----HHHHHHHHHHHS-------------------CGGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--------CHH----HHHHHHHHHHHC-------------------CCHH
T ss_conf 899999984799778999999996877526--------999----889999998726-------------------6032
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 628999999999999999999887676889999999998360660358899999999999950
Q 000796 929 DAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 991 (1280)
Q Consensus 929 ~~W~~eT~~laL~~lv~Lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~la~ig~~~l~~li~~~ 991 (1280)
.++..++++.++.- .--+.+.+....+|..|.+.+....+++......|+..++...
T Consensus 906 ----~~~~l~al~e~i~~--~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~ 962 (1230)
T 1u6g_C 906 ----QYLLLHSLKEIISS--ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962 (1230)
T ss_dssp ----HHHHHHHHHHHHHS--SCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf ----49889999999823--8766677669999999998733830446899998875665067
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=42.00 Aligned_cols=109 Identities=6% Similarity=0.073 Sum_probs=47.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99985037877879999999999999984015654210023332436999982077389999999999999970001245
Q 000796 637 DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK 716 (1280)
Q Consensus 637 ~hf~~v~~~~n~~va~~AidsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eire~iL~cl~~li~~~~~~Ik 716 (1280)
+.+...-.+++..||.-|...|.+++.-+- .+. ...+-..++.++...+. ..+..||+....++.++++..+..+.
T Consensus 403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~--~~~~~~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVV-SQP--PDTYLKPLMTELLKRIL-DSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTHHHHH-HSC--TTTTHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCH--HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987179988999999999999998861-104--78999999999999985-89888999999999999997367667
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 581899999977411772468999999999999
Q 000796 717 SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKII 749 (1280)
Q Consensus 717 SGW~~IF~iL~~aa~~~~~~iv~~aF~~l~~I~ 749 (1280)
.=-..++..|...............++++..|+
T Consensus 479 ~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 479 PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp GGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 679999999999998837479999999999999
Done!