Query 000797
Match_columns 1280
No_of_seqs 270 out of 435
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 23:43:50 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 100.0 3.3E-51 7.1E-56 464.8 34.8 421 827-1252 85-532 (533)
2 KOG2171 Karyopherin (importin) 99.7 6.3E-13 1.4E-17 166.5 47.9 593 493-1255 53-717 (1075)
3 PRK09687 putative lyase; Provi 99.2 3.1E-09 6.7E-14 121.3 23.0 53 1182-1248 227-279 (280)
4 PRK09687 putative lyase; Provi 99.2 2.2E-09 4.8E-14 122.5 21.4 224 982-1251 25-250 (280)
5 PRK13800 putative oxidoreducta 99.0 1.6E-08 3.5E-13 133.1 23.9 240 941-1247 653-895 (897)
6 PRK13800 putative oxidoreducta 99.0 1E-08 2.2E-13 135.0 21.4 242 939-1249 620-865 (897)
7 KOG1824 TATA-binding protein-i 98.9 0.00078 1.7E-08 84.1 71.5 982 3-1212 10-1138(1233)
8 KOG2171 Karyopherin (importin) 98.9 1.4E-06 3E-11 110.7 30.8 305 919-1250 96-417 (1075)
9 PTZ00429 beta-adaptin; Provisi 98.8 9.4E-07 2E-11 112.4 29.3 310 915-1250 45-396 (746)
10 PF01602 Adaptin_N: Adaptin N 98.8 8.3E-07 1.8E-11 110.7 26.0 308 915-1254 19-336 (526)
11 KOG1242 Protein containing ada 98.7 1.3E-06 2.8E-11 105.2 22.6 305 937-1253 131-446 (569)
12 PLN03200 cellulose synthase-in 98.7 3.1E-06 6.6E-11 115.3 27.3 270 941-1253 447-725 (2102)
13 TIGR02270 conserved hypothetic 98.6 3.9E-06 8.4E-11 100.5 22.5 207 982-1250 88-295 (410)
14 PF01602 Adaptin_N: Adaptin N 98.6 1.5E-06 3.3E-11 108.4 19.3 308 927-1259 66-378 (526)
15 KOG2032 Uncharacterized conser 98.5 6.2E-06 1.3E-10 96.6 18.7 184 427-684 21-205 (533)
16 PLN03200 cellulose synthase-in 98.4 5.7E-05 1.2E-09 103.4 28.5 269 940-1252 488-765 (2102)
17 KOG2023 Nuclear transport rece 98.3 0.00072 1.5E-08 81.7 31.0 313 924-1250 380-731 (885)
18 PF10508 Proteasom_PSMB: Prote 98.3 0.00057 1.2E-08 84.9 31.0 295 945-1251 43-366 (503)
19 KOG0166 Karyopherin (importin) 98.3 3.8E-05 8.3E-10 92.3 19.5 292 942-1250 68-392 (514)
20 KOG0211 Protein phosphatase 2A 98.2 8.8E-05 1.9E-09 94.0 21.0 262 976-1250 394-663 (759)
21 KOG0166 Karyopherin (importin) 98.1 9.7E-05 2.1E-09 89.0 19.5 202 1016-1256 235-441 (514)
22 KOG0213 Splicing factor 3b, su 98.1 0.01 2.3E-07 72.6 34.6 331 885-1254 654-1027(1172)
23 KOG2023 Nuclear transport rece 98.1 0.0001 2.3E-09 88.6 18.0 272 938-1251 172-505 (885)
24 TIGR02270 conserved hypothetic 98.0 0.00023 5E-09 85.5 20.3 193 979-1250 53-266 (410)
25 KOG1060 Vesicle coat complex A 98.0 0.0022 4.7E-08 79.1 28.0 290 938-1250 69-457 (968)
26 KOG1241 Karyopherin (importin) 98.0 0.0012 2.6E-08 81.1 24.8 306 936-1247 360-712 (859)
27 PTZ00429 beta-adaptin; Provisi 97.9 0.004 8.8E-08 79.9 29.1 255 937-1210 137-400 (746)
28 COG1413 FOG: HEAT repeat [Ener 97.9 0.00024 5.2E-09 83.7 16.3 110 980-1121 43-153 (335)
29 KOG0915 Uncharacterized conser 97.9 0.0012 2.6E-08 86.3 22.7 326 915-1255 938-1310(1702)
30 PF12348 CLASP_N: CLASP N term 97.8 0.00049 1.1E-08 76.4 15.5 183 1029-1252 18-207 (228)
31 PF12348 CLASP_N: CLASP N term 97.7 0.00038 8.2E-09 77.3 13.8 188 950-1145 17-217 (228)
32 KOG1824 TATA-binding protein-i 97.7 0.35 7.6E-06 61.6 58.5 182 1055-1250 816-1035(1233)
33 COG1413 FOG: HEAT repeat [Ener 97.7 0.0021 4.5E-08 75.8 19.7 260 939-1261 42-314 (335)
34 PF10508 Proteasom_PSMB: Prote 97.5 0.011 2.3E-07 73.7 24.3 279 939-1252 118-421 (503)
35 KOG1241 Karyopherin (importin) 97.5 0.04 8.7E-07 68.4 27.6 302 943-1254 93-438 (859)
36 KOG1242 Protein containing ada 97.5 0.023 4.9E-07 69.5 25.5 299 935-1245 211-558 (569)
37 PF13646 HEAT_2: HEAT repeats; 97.5 0.00024 5.2E-09 66.2 7.2 86 982-1085 1-88 (88)
38 KOG0915 Uncharacterized conser 97.5 0.03 6.5E-07 73.9 27.8 320 886-1214 940-1313(1702)
39 PF12717 Cnd1: non-SMC mitotic 97.3 0.0052 1.1E-07 65.8 15.4 112 956-1070 4-115 (178)
40 PF13646 HEAT_2: HEAT repeats; 97.3 0.0016 3.5E-08 60.6 9.9 86 1108-1247 2-88 (88)
41 PF05004 IFRD: Interferon-rela 97.3 0.016 3.5E-07 67.5 20.1 213 1020-1254 45-260 (309)
42 COG5240 SEC21 Vesicle coat com 97.3 0.16 3.5E-06 61.2 27.9 378 832-1250 154-554 (898)
43 KOG1240 Protein kinase contain 97.3 0.0071 1.5E-07 77.7 18.1 245 956-1210 439-728 (1431)
44 COG5181 HSH155 U2 snRNP splice 97.3 0.87 1.9E-05 55.6 34.1 257 979-1250 603-869 (975)
45 KOG0213 Splicing factor 3b, su 97.3 0.99 2.2E-05 56.2 36.5 257 979-1249 798-1063(1172)
46 KOG4224 Armadillo repeat prote 97.3 0.0022 4.8E-08 72.8 11.8 144 1071-1250 345-492 (550)
47 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00064 1.4E-08 57.9 5.3 55 1192-1249 1-55 (55)
48 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0019 4.1E-08 62.0 8.5 87 1035-1126 3-89 (97)
49 COG5096 Vesicle coat complex, 97.1 0.047 1E-06 69.3 22.9 294 930-1250 82-385 (757)
50 COG5215 KAP95 Karyopherin (imp 97.0 0.043 9.4E-07 65.9 19.9 285 937-1232 363-690 (858)
51 KOG0212 Uncharacterized conser 96.9 0.0063 1.4E-07 72.9 12.3 262 948-1252 8-277 (675)
52 KOG0211 Protein phosphatase 2A 96.8 0.017 3.6E-07 73.9 15.4 246 956-1246 214-461 (759)
53 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.002 4.4E-08 61.8 5.6 86 996-1082 2-90 (97)
54 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0025 5.4E-08 54.2 5.6 52 994-1045 1-55 (55)
55 COG5064 SRP1 Karyopherin (impo 96.8 0.014 2.9E-07 66.1 12.5 255 958-1253 133-445 (526)
56 PF05004 IFRD: Interferon-rela 96.8 0.13 2.8E-06 60.1 21.2 234 982-1240 45-291 (309)
57 cd00020 ARM Armadillo/beta-cat 96.7 0.003 6.5E-08 61.7 6.2 106 981-1088 8-119 (120)
58 PF05804 KAP: Kinesin-associat 96.6 0.14 3E-06 65.5 21.8 305 937-1254 287-652 (708)
59 PF12719 Cnd3: Nuclear condens 96.6 0.17 3.7E-06 58.8 21.0 142 977-1123 23-174 (298)
60 KOG1059 Vesicle coat complex A 96.6 0.38 8.2E-06 59.8 23.8 197 915-1126 120-357 (877)
61 KOG1062 Vesicle coat complex A 96.5 0.27 5.8E-06 61.8 22.4 133 946-1089 76-208 (866)
62 KOG1943 Beta-tubulin folding c 96.5 0.093 2E-06 67.6 18.7 261 976-1252 337-612 (1133)
63 KOG1243 Protein kinase [Genera 96.5 0.048 1E-06 67.6 15.8 280 882-1257 234-521 (690)
64 KOG0212 Uncharacterized conser 96.4 0.27 5.9E-06 59.5 20.9 276 936-1252 38-322 (675)
65 COG5181 HSH155 U2 snRNP splice 96.4 0.23 5E-06 60.4 20.1 292 935-1246 599-907 (975)
66 KOG0567 HEAT repeat-containing 96.4 0.11 2.3E-06 57.8 16.2 158 1020-1207 38-216 (289)
67 PF12717 Cnd1: non-SMC mitotic 96.4 0.013 2.8E-07 62.8 9.1 113 993-1117 1-113 (178)
68 cd00020 ARM Armadillo/beta-cat 96.4 0.016 3.5E-07 56.5 9.3 110 1018-1133 7-119 (120)
69 KOG2956 CLIP-associating prote 96.4 0.064 1.4E-06 63.6 15.2 194 914-1111 299-499 (516)
70 smart00638 LPD_N Lipoprotein N 96.4 0.16 3.5E-06 64.5 20.2 166 938-1129 391-573 (574)
71 KOG1077 Vesicle coat complex A 96.2 0.42 9.1E-06 59.2 21.2 136 946-1090 80-217 (938)
72 KOG2259 Uncharacterized conser 96.2 0.09 1.9E-06 64.4 15.6 103 981-1089 199-310 (823)
73 PF04826 Arm_2: Armadillo-like 96.2 0.15 3.2E-06 57.8 16.4 164 941-1111 13-184 (254)
74 COG5096 Vesicle coat complex, 96.2 0.23 5.1E-06 63.3 19.6 189 915-1118 32-220 (757)
75 PF02985 HEAT: HEAT repeat; I 96.1 0.0072 1.6E-07 45.3 3.7 30 1223-1253 2-31 (31)
76 KOG1967 DNA repair/transcripti 96.0 0.2 4.3E-06 63.7 17.2 210 912-1130 786-1020(1030)
77 KOG1062 Vesicle coat complex A 95.9 2.8 6E-05 53.2 26.4 168 926-1107 257-431 (866)
78 KOG1240 Protein kinase contain 95.8 0.28 6.1E-06 63.9 18.2 196 1017-1254 461-688 (1431)
79 KOG2259 Uncharacterized conser 95.8 0.17 3.6E-06 62.2 15.2 248 939-1244 233-509 (823)
80 COG5240 SEC21 Vesicle coat com 95.8 1.6 3.5E-05 53.1 22.8 310 915-1250 203-515 (898)
81 KOG2025 Chromosome condensatio 95.8 0.21 4.6E-06 61.8 16.0 188 937-1131 41-256 (892)
82 PF01347 Vitellogenin_N: Lipop 95.7 0.12 2.6E-06 66.2 14.8 166 938-1129 429-617 (618)
83 KOG4224 Armadillo repeat prote 95.5 0.068 1.5E-06 61.2 9.8 139 989-1132 176-319 (550)
84 PF12460 MMS19_C: RNAPII trans 95.3 10 0.00022 46.3 30.4 331 778-1132 22-392 (415)
85 KOG4653 Uncharacterized conser 95.3 0.8 1.7E-05 58.1 18.9 233 982-1254 729-967 (982)
86 PF14225 MOR2-PAG1_C: Cell mor 95.3 0.98 2.1E-05 51.4 18.4 220 1017-1250 6-250 (262)
87 COG5218 YCG1 Chromosome conden 95.2 0.75 1.6E-05 55.9 17.7 210 916-1131 24-263 (885)
88 KOG1820 Microtubule-associated 95.1 0.24 5.3E-06 64.1 14.4 200 938-1146 251-456 (815)
89 KOG1058 Vesicle coat complex C 95.1 1.2 2.7E-05 55.7 19.3 82 961-1045 77-161 (948)
90 KOG4653 Uncharacterized conser 94.6 0.78 1.7E-05 58.2 16.3 172 921-1100 746-928 (982)
91 KOG1820 Microtubule-associated 94.5 1.3 2.8E-05 57.7 18.4 186 1024-1252 259-444 (815)
92 KOG1059 Vesicle coat complex A 94.3 17 0.00036 46.1 26.3 115 926-1047 242-365 (877)
93 PF02985 HEAT: HEAT repeat; I 94.3 0.021 4.5E-07 42.8 1.3 29 981-1009 1-29 (31)
94 PF04826 Arm_2: Armadillo-like 94.3 0.37 8E-06 54.6 11.7 103 983-1089 15-124 (254)
95 KOG1060 Vesicle coat complex A 94.2 6.8 0.00015 49.8 22.9 268 944-1249 39-348 (968)
96 KOG2956 CLIP-associating prote 94.1 1.9 4.1E-05 51.7 17.3 200 937-1146 284-490 (516)
97 KOG2062 26S proteasome regulat 94.1 1.8 4E-05 54.2 17.6 130 1068-1256 527-658 (929)
98 PF12460 MMS19_C: RNAPII trans 93.7 1.8 3.8E-05 52.9 17.0 171 937-1114 226-414 (415)
99 COG5215 KAP95 Karyopherin (imp 93.6 20 0.00043 44.2 24.3 276 981-1263 95-449 (858)
100 KOG1991 Nuclear transport rece 93.5 17 0.00038 47.5 25.2 311 919-1244 438-793 (1010)
101 KOG1061 Vesicle coat complex A 93.5 4.7 0.0001 51.2 20.0 164 915-1089 26-189 (734)
102 KOG1943 Beta-tubulin folding c 93.2 39 0.00085 44.8 31.7 390 763-1253 333-789 (1133)
103 KOG1517 Guanine nucleotide bin 93.1 2.1 4.5E-05 55.5 16.2 271 838-1134 430-732 (1387)
104 KOG1248 Uncharacterized conser 93.1 1.8 3.9E-05 57.0 16.1 205 937-1145 694-910 (1176)
105 KOG1949 Uncharacterized conser 92.8 4.8 0.0001 50.3 18.1 142 945-1089 179-331 (1005)
106 PF14500 MMS19_N: Dos2-interac 92.8 1.8 4E-05 49.3 14.2 199 943-1147 2-217 (262)
107 PF01347 Vitellogenin_N: Lipop 92.8 1.6 3.4E-05 56.1 15.4 148 977-1144 432-601 (618)
108 cd00256 VATPase_H VATPase_H, r 92.7 31 0.00067 42.2 28.5 291 943-1250 104-424 (429)
109 KOG1517 Guanine nucleotide bin 92.5 0.99 2.2E-05 58.3 12.3 185 1034-1252 486-672 (1387)
110 PF10363 DUF2435: Protein of u 92.3 0.58 1.3E-05 44.6 7.9 69 1180-1252 5-73 (92)
111 KOG1020 Sister chromatid cohes 92.0 66 0.0014 44.3 39.9 308 915-1250 1050-1404(1692)
112 KOG1061 Vesicle coat complex A 91.6 8.4 0.00018 49.0 18.8 284 935-1240 116-478 (734)
113 COG5064 SRP1 Karyopherin (impo 91.5 1.5 3.2E-05 50.4 11.1 260 950-1249 81-354 (526)
114 smart00638 LPD_N Lipoprotein N 91.4 2.6 5.5E-05 53.7 14.8 146 979-1144 396-557 (574)
115 PF05918 API5: Apoptosis inhib 91.2 19 0.0004 45.3 21.1 154 952-1116 34-189 (556)
116 KOG1078 Vesicle coat complex C 91.0 59 0.0013 41.9 28.8 250 980-1250 245-531 (865)
117 KOG0567 HEAT repeat-containing 90.7 1 2.2E-05 50.3 8.7 93 979-1132 186-278 (289)
118 KOG1078 Vesicle coat complex C 90.7 6.2 0.00013 50.2 16.2 162 912-1089 218-383 (865)
119 PF13251 DUF4042: Domain of un 90.5 4.3 9.4E-05 43.7 13.2 163 1075-1250 1-173 (182)
120 PF12719 Cnd3: Nuclear condens 90.0 20 0.00044 41.6 19.4 166 937-1113 23-204 (298)
121 PF12830 Nipped-B_C: Sister ch 90.0 1.1 2.4E-05 48.4 8.3 73 1175-1254 5-78 (187)
122 KOG4535 HEAT and armadillo rep 89.9 12 0.00025 45.2 16.8 208 1016-1250 388-602 (728)
123 KOG0414 Chromosome condensatio 89.8 14 0.0003 49.2 18.8 112 1066-1210 318-431 (1251)
124 PF05804 KAP: Kinesin-associat 89.8 36 0.00078 44.2 22.7 138 992-1135 503-650 (708)
125 PF10363 DUF2435: Protein of u 89.7 1.2 2.7E-05 42.4 7.4 85 941-1029 4-88 (92)
126 KOG0414 Chromosome condensatio 89.3 3.9 8.4E-05 54.0 13.5 148 954-1119 937-1085(1251)
127 PF08064 UME: UME (NUC010) dom 89.2 1.9 4E-05 42.4 8.5 77 1032-1111 29-105 (107)
128 PF11864 DUF3384: Domain of un 89.2 67 0.0015 39.9 25.4 295 920-1259 8-343 (464)
129 PF08064 UME: UME (NUC010) dom 89.1 0.97 2.1E-05 44.3 6.4 87 982-1070 13-106 (107)
130 COG5116 RPN2 26S proteasome re 88.8 7.2 0.00016 47.7 14.3 133 1066-1257 522-656 (926)
131 KOG2160 Armadillo/beta-catenin 88.3 12 0.00025 44.0 15.4 138 950-1089 93-240 (342)
132 smart00802 UME Domain in UVSB 88.1 1.3 2.8E-05 43.4 6.5 88 981-1070 12-106 (107)
133 PF14868 DUF4487: Domain of un 87.9 39 0.00084 42.7 20.6 261 983-1255 269-556 (559)
134 KOG0803 Predicted E3 ubiquitin 87.7 16 0.00034 50.2 18.1 220 1020-1256 43-268 (1312)
135 KOG2025 Chromosome condensatio 87.7 19 0.00041 45.6 17.1 188 937-1131 82-291 (892)
136 PF13251 DUF4042: Domain of un 87.6 1.7 3.6E-05 46.8 7.6 102 988-1089 48-174 (182)
137 PF08167 RIX1: rRNA processing 87.1 3.8 8.3E-05 43.4 9.9 119 937-1061 22-156 (165)
138 PF10274 ParcG: Parkin co-regu 86.8 3.1 6.7E-05 44.6 8.9 113 978-1091 36-166 (183)
139 KOG1058 Vesicle coat complex C 86.4 24 0.00052 45.0 17.1 243 937-1207 96-346 (948)
140 PF14500 MMS19_N: Dos2-interac 86.1 59 0.0013 37.2 19.4 233 984-1227 3-256 (262)
141 KOG2122 Beta-catenin-binding p 85.7 40 0.00086 46.1 19.2 216 830-1049 312-603 (2195)
142 PF10274 ParcG: Parkin co-regu 85.3 2.6 5.7E-05 45.1 7.5 87 1017-1103 37-125 (183)
143 COG5098 Chromosome condensatio 85.0 4.9 0.00011 50.1 10.3 129 920-1048 279-416 (1128)
144 KOG4413 26S proteasome regulat 84.6 86 0.0019 36.4 21.3 265 938-1210 35-336 (524)
145 PF08506 Cse1: Cse1; InterPro 84.3 28 0.0006 41.9 16.4 52 1189-1246 319-370 (370)
146 KOG2274 Predicted importin 9 [ 84.1 1.4E+02 0.003 39.4 22.5 270 935-1240 485-769 (1005)
147 PF12726 SEN1_N: SEN1 N termin 83.9 1.6E+02 0.0034 38.9 25.1 156 1072-1241 395-576 (727)
148 KOG1967 DNA repair/transcripti 83.7 5.6 0.00012 51.3 10.4 148 939-1086 862-1021(1030)
149 KOG1991 Nuclear transport rece 83.4 1.7E+02 0.0037 38.9 26.9 182 929-1115 398-599 (1010)
150 KOG2973 Uncharacterized conser 83.1 32 0.0007 39.7 15.0 80 1178-1260 174-284 (353)
151 PF08167 RIX1: rRNA processing 82.7 11 0.00024 39.9 10.9 134 975-1111 20-164 (165)
152 KOG1293 Proteins containing ar 82.4 8.6 0.00019 48.1 11.0 141 1074-1250 391-532 (678)
153 PF13001 Ecm29: Proteasome sta 81.3 17 0.00037 45.5 13.7 161 1014-1208 315-489 (501)
154 PF03224 V-ATPase_H_N: V-ATPas 81.2 38 0.00083 39.6 15.9 161 1019-1193 106-274 (312)
155 KOG2062 26S proteasome regulat 81.0 9.4 0.0002 48.2 10.7 135 1064-1250 558-695 (929)
156 KOG0413 Uncharacterized conser 80.8 6.9 0.00015 50.5 9.6 127 975-1118 963-1095(1529)
157 KOG1525 Sister chromatid cohes 80.5 2.6E+02 0.0056 39.0 26.2 293 885-1250 20-328 (1266)
158 KOG0392 SNF2 family DNA-depend 80.4 12 0.00026 50.0 11.7 110 980-1089 816-925 (1549)
159 PF12074 DUF3554: Domain of un 80.0 32 0.00069 40.8 14.8 187 937-1133 19-234 (339)
160 COG5116 RPN2 26S proteasome re 79.9 15 0.00032 45.2 11.5 100 1064-1213 555-656 (926)
161 KOG1243 Protein kinase [Genera 78.5 3.3 7.1E-05 52.1 5.9 192 937-1138 327-519 (690)
162 KOG1949 Uncharacterized conser 78.5 24 0.00052 44.5 12.9 214 981-1206 175-420 (1005)
163 smart00802 UME Domain in UVSB 78.4 9.4 0.0002 37.5 7.9 75 1034-1111 31-105 (107)
164 KOG2933 Uncharacterized conser 77.8 14 0.00031 42.5 10.1 150 979-1138 128-281 (334)
165 KOG2274 Predicted importin 9 [ 77.8 7.2 0.00016 50.3 8.5 140 979-1118 89-242 (1005)
166 PF00514 Arm: Armadillo/beta-c 77.1 2.8 6.2E-05 33.2 3.3 29 1221-1250 12-40 (41)
167 KOG0168 Putative ubiquitin fus 76.3 25 0.00054 45.4 12.5 192 947-1147 174-380 (1051)
168 KOG1020 Sister chromatid cohes 76.3 3.4E+02 0.0073 38.1 28.5 281 915-1207 789-1102(1692)
169 KOG4535 HEAT and armadillo rep 76.1 7.9 0.00017 46.6 7.7 140 992-1131 403-556 (728)
170 PF10521 DUF2454: Protein of u 75.9 77 0.0017 36.6 15.9 220 909-1137 12-256 (282)
171 PF14664 RICTOR_N: Rapamycin-i 75.4 72 0.0016 38.4 15.9 179 953-1134 81-269 (371)
172 COG5218 YCG1 Chromosome conden 74.7 11 0.00023 46.5 8.5 86 1160-1251 70-161 (885)
173 KOG2973 Uncharacterized conser 73.5 6.6 0.00014 45.0 6.1 65 1180-1250 5-70 (353)
174 COG5098 Chromosome condensatio 72.5 25 0.00053 44.3 10.9 109 1065-1207 304-415 (1128)
175 KOG2137 Protein kinase [Signal 72.4 32 0.0007 43.8 12.2 144 974-1125 383-528 (700)
176 PF08569 Mo25: Mo25-like; Int 71.4 1.3E+02 0.0028 35.8 16.4 179 1069-1250 85-282 (335)
177 KOG4199 Uncharacterized conser 70.9 2.2E+02 0.0048 33.5 18.2 196 1020-1261 243-455 (461)
178 KOG3678 SARM protein (with ste 69.6 96 0.0021 37.6 14.4 265 938-1252 178-453 (832)
179 PF04118 Dopey_N: Dopey, N-ter 69.2 72 0.0016 37.4 13.5 167 1034-1244 71-247 (307)
180 KOG2160 Armadillo/beta-catenin 69.1 11 0.00023 44.3 6.6 68 1183-1251 129-196 (342)
181 PF11698 V-ATPase_H_C: V-ATPas 68.6 11 0.00024 37.6 5.8 78 1173-1252 38-116 (119)
182 COG5231 VMA13 Vacuolar H+-ATPa 67.3 1.4E+02 0.0031 34.7 14.7 90 1158-1253 340-430 (432)
183 cd06561 AlkD_like A new struct 66.2 19 0.00041 38.8 7.7 84 1160-1252 88-171 (197)
184 KOG2149 Uncharacterized conser 66.1 32 0.00069 41.1 9.8 131 981-1112 59-192 (393)
185 PF12530 DUF3730: Protein of u 66.1 2.3E+02 0.0049 31.8 16.9 164 915-1082 51-232 (234)
186 PF10521 DUF2454: Protein of u 65.6 1.3E+02 0.0028 34.8 14.7 168 1042-1236 100-279 (282)
187 KOG2137 Protein kinase [Signal 65.0 52 0.0011 42.0 11.9 110 1014-1132 385-494 (700)
188 KOG1248 Uncharacterized conser 64.9 5.1E+02 0.011 35.4 63.4 203 1014-1251 693-898 (1176)
189 PLN03076 ARF guanine nucleotid 63.8 4.6E+02 0.01 38.2 21.7 165 951-1115 1194-1403(1780)
190 PF08713 DNA_alkylation: DNA a 62.3 91 0.002 33.9 12.3 156 1067-1252 26-185 (213)
191 PF11865 DUF3385: Domain of un 62.1 54 0.0012 34.6 9.9 71 1018-1089 86-157 (160)
192 KOG2933 Uncharacterized conser 61.5 40 0.00087 39.0 9.1 129 917-1050 103-237 (334)
193 KOG4500 Rho/Rac GTPase guanine 60.5 3.9E+02 0.0084 32.6 19.1 160 1061-1255 316-479 (604)
194 PF14664 RICTOR_N: Rapamycin-i 59.8 3.8E+02 0.0083 32.3 19.8 145 978-1131 23-173 (371)
195 PF03130 HEAT_PBS: PBS lyase H 59.7 6.8 0.00015 28.4 1.9 27 996-1029 1-27 (27)
196 PF05536 Neurochondrin: Neuroc 59.1 4.3E+02 0.0092 33.7 18.8 246 939-1212 4-266 (543)
197 PF12765 Cohesin_HEAT: HEAT re 58.1 11 0.00025 30.4 3.1 29 1217-1246 14-42 (42)
198 KOG0946 ER-Golgi vesicle-tethe 57.7 1.5E+02 0.0032 38.6 13.7 168 1057-1253 23-197 (970)
199 PF12765 Cohesin_HEAT: HEAT re 56.7 13 0.00028 30.1 3.2 25 979-1003 17-41 (42)
200 KOG1077 Vesicle coat complex A 54.1 6.1E+02 0.013 32.9 27.2 217 1017-1259 208-442 (938)
201 PF14961 BROMI: Broad-minded p 53.3 79 0.0017 42.8 11.0 199 983-1191 164-385 (1296)
202 KOG4500 Rho/Rac GTPase guanine 53.0 97 0.0021 37.4 10.6 152 941-1113 316-476 (604)
203 PF12830 Nipped-B_C: Sister ch 50.6 1.6E+02 0.0034 31.8 11.4 117 1066-1191 14-143 (187)
204 PF12054 DUF3535: Domain of un 50.0 2.8E+02 0.0061 34.3 14.8 35 1220-1254 311-345 (441)
205 KOG4413 26S proteasome regulat 48.8 68 0.0015 37.2 8.3 106 1038-1147 63-169 (524)
206 KOG1992 Nuclear export recepto 48.7 7.8E+02 0.017 32.6 22.7 302 923-1235 4-417 (960)
207 PF14228 MOR2-PAG1_mid: Cell m 48.3 9.5E+02 0.02 33.4 23.2 83 1162-1252 491-573 (1120)
208 PF12726 SEN1_N: SEN1 N termin 48.2 7.9E+02 0.017 32.5 26.7 130 1117-1249 395-551 (727)
209 KOG2022 Nuclear transport rece 48.1 8.2E+02 0.018 32.6 34.4 92 1157-1250 810-917 (982)
210 PF00514 Arm: Armadillo/beta-c 47.7 26 0.00056 27.7 3.6 29 1105-1133 12-40 (41)
211 PF01603 B56: Protein phosphat 47.3 4.1E+02 0.0089 32.5 15.5 212 918-1133 105-369 (409)
212 COG5209 RCD1 Uncharacterized p 46.2 1.3E+02 0.0029 33.3 9.6 153 1030-1196 112-274 (315)
213 KOG2005 26S proteasome regulat 45.5 3.2E+02 0.0069 35.1 13.7 53 1190-1251 652-704 (878)
214 KOG1822 Uncharacterized conser 44.9 1.2E+03 0.027 33.8 22.3 154 915-1071 889-1050(2067)
215 KOG1293 Proteins containing ar 44.1 8.2E+02 0.018 31.5 22.1 184 946-1131 337-530 (678)
216 cd00197 VHS_ENTH_ANTH VHS, ENT 43.2 40 0.00086 33.2 5.0 66 2-67 41-114 (115)
217 KOG0392 SNF2 family DNA-depend 42.9 2.5E+02 0.0054 38.5 12.9 159 976-1136 204-387 (1549)
218 KOG2759 Vacuolar H+-ATPase V1 42.0 87 0.0019 37.8 8.1 95 901-1003 330-432 (442)
219 PF12054 DUF3535: Domain of un 41.8 4.9E+02 0.011 32.2 15.0 71 923-993 108-181 (441)
220 PF08713 DNA_alkylation: DNA a 41.4 4.2E+02 0.009 28.7 13.3 156 895-1058 5-194 (213)
221 KOG1525 Sister chromatid cohes 40.5 1.6E+02 0.0034 40.9 11.2 130 915-1048 272-406 (1266)
222 PRK14707 hypothetical protein; 40.4 1.5E+03 0.033 33.6 29.0 351 834-1248 687-1072(2710)
223 PF08569 Mo25: Mo25-like; Int 40.3 7.1E+02 0.015 29.7 19.5 210 911-1131 53-280 (335)
224 smart00567 EZ_HEAT E-Z type HE 39.6 28 0.00061 25.5 2.5 28 995-1029 2-29 (30)
225 COG5110 RPN1 26S proteasome re 39.5 8.9E+02 0.019 30.6 17.5 75 979-1057 449-526 (881)
226 KOG1822 Uncharacterized conser 39.4 1.5E+03 0.032 33.1 20.4 187 937-1124 819-1022(2067)
227 PF13001 Ecm29: Proteasome sta 38.6 3.4E+02 0.0073 34.2 13.3 107 981-1089 320-443 (501)
228 KOG1048 Neural adherens juncti 38.5 8.7E+02 0.019 31.8 16.6 73 933-1009 230-304 (717)
229 KOG0413 Uncharacterized conser 36.6 3E+02 0.0065 36.7 11.9 160 1071-1251 483-645 (1529)
230 smart00185 ARM Armadillo/beta- 36.0 47 0.001 25.5 3.4 28 1222-1250 13-40 (41)
231 PF00790 VHS: VHS domain; Int 35.7 2.7E+02 0.0059 28.5 9.9 90 1160-1251 25-118 (140)
232 PF01603 B56: Protein phosphat 35.7 4.2E+02 0.0091 32.4 13.1 135 917-1052 232-374 (409)
233 cd03561 VHS VHS domain family; 35.6 3.3E+02 0.0071 27.6 10.4 89 1160-1250 20-111 (133)
234 PF06685 DUF1186: Protein of u 35.4 6.2E+02 0.013 28.8 13.3 93 1066-1164 117-213 (249)
235 smart00288 VHS Domain present 35.0 3.3E+02 0.0071 27.7 10.3 89 1160-1250 20-110 (133)
236 KOG2759 Vacuolar H+-ATPase V1 34.4 1.1E+02 0.0023 37.1 7.3 88 1158-1251 350-438 (442)
237 PF11707 Npa1: Ribosome 60S bi 34.1 5.1E+02 0.011 30.6 13.2 166 915-1088 39-236 (330)
238 cd03572 ENTH_epsin_related ENT 34.1 4.3E+02 0.0094 26.7 10.6 91 1160-1252 21-120 (122)
239 PRK14707 hypothetical protein; 33.3 1.9E+03 0.041 32.6 29.6 338 883-1268 894-1263(2710)
240 cd03572 ENTH_epsin_related ENT 33.0 78 0.0017 31.9 5.1 67 1-67 41-118 (122)
241 KOG2122 Beta-catenin-binding p 32.2 6.5E+02 0.014 35.5 14.2 226 990-1251 360-601 (2195)
242 PF08767 CRM1_C: CRM1 C termin 32.0 2E+02 0.0044 33.9 9.3 108 940-1047 117-244 (319)
243 KOG3961 Uncharacterized conser 31.9 87 0.0019 34.4 5.5 87 1017-1104 113-201 (262)
244 PF14225 MOR2-PAG1_C: Cell mor 31.9 5.5E+02 0.012 29.5 12.4 71 938-1008 5-77 (262)
245 cd03568 VHS_STAM VHS domain fa 29.9 4.5E+02 0.0097 27.3 10.3 88 1160-1249 20-108 (144)
246 PF11701 UNC45-central: Myosin 28.7 1.5E+02 0.0032 31.2 6.7 125 920-1045 23-157 (157)
247 PF11262 Tho2: Transcription f 28.0 3.9E+02 0.0085 31.2 10.6 109 977-1087 172-297 (298)
248 cd03568 VHS_STAM VHS domain fa 27.7 1.2E+02 0.0025 31.5 5.6 65 3-68 42-110 (144)
249 COG5234 CIN1 Beta-tubulin fold 27.6 5.9E+02 0.013 33.0 12.2 120 1011-1132 239-414 (993)
250 cd03561 VHS VHS domain family; 27.4 1.3E+02 0.0029 30.5 5.9 65 3-68 42-112 (133)
251 PF11698 V-ATPase_H_C: V-ATPas 26.7 1.2E+02 0.0026 30.5 5.1 25 1022-1046 90-114 (119)
252 smart00185 ARM Armadillo/beta- 25.7 85 0.0018 24.0 3.3 28 1019-1046 13-40 (41)
253 cd03569 VHS_Hrs_Vps27p VHS dom 25.1 1.5E+02 0.0033 30.6 5.9 65 3-68 46-114 (142)
254 PF08506 Cse1: Cse1; InterPro 25.1 5E+02 0.011 31.4 11.1 126 915-1041 223-369 (370)
255 COG5101 CRM1 Importin beta-rel 25.0 5.3E+02 0.011 33.0 11.0 85 268-364 487-580 (1053)
256 KOG0946 ER-Golgi vesicle-tethe 24.8 1.8E+03 0.038 29.5 30.6 73 1017-1089 314-399 (970)
257 KOG2149 Uncharacterized conser 24.6 2.2E+02 0.0048 34.3 7.7 66 1023-1089 63-128 (393)
258 PF07539 DRIM: Down-regulated 24.4 3.8E+02 0.0082 27.8 8.6 41 979-1019 16-56 (141)
259 KOG4524 Uncharacterized conser 24.1 3.1E+02 0.0067 36.6 9.3 81 1057-1138 800-880 (1014)
260 cd03569 VHS_Hrs_Vps27p VHS dom 23.3 6.9E+02 0.015 25.8 10.3 88 1162-1250 26-113 (142)
261 KOG2021 Nuclear mRNA export fa 22.7 1.8E+03 0.038 29.3 15.0 196 1015-1237 530-750 (980)
262 PF10304 DUF2411: Domain of un 22.6 1.6E+02 0.0035 23.1 4.1 30 1220-1249 4-33 (36)
263 cd08050 TAF6 TATA Binding Prot 22.6 5.1E+02 0.011 30.9 10.5 113 989-1109 187-316 (343)
264 KOG0803 Predicted E3 ubiquitin 22.1 1.6E+03 0.034 31.8 15.8 108 980-1089 41-153 (1312)
265 smart00145 PI3Ka Phosphoinosit 21.4 2.8E+02 0.006 30.1 7.2 43 979-1023 77-119 (184)
266 COG5231 VMA13 Vacuolar H+-ATPa 21.2 4.6E+02 0.0099 30.9 8.9 93 903-1003 322-422 (432)
267 KOG3678 SARM protein (with ste 21.0 8.9E+02 0.019 29.8 11.5 110 1033-1147 197-307 (832)
268 KOG3961 Uncharacterized conser 20.7 1.1E+02 0.0025 33.6 4.0 82 982-1063 116-202 (262)
269 smart00288 VHS Domain present 20.6 1.9E+02 0.0042 29.4 5.6 66 2-68 41-111 (133)
270 COG5369 Uncharacterized conser 20.5 6.2E+02 0.013 31.8 10.3 108 981-1088 432-544 (743)
271 KOG2081 Nuclear transport regu 20.2 1.8E+03 0.04 28.0 15.4 215 839-1063 318-552 (559)
272 cd00870 PI3Ka_III Phosphoinosi 20.2 2.7E+02 0.0058 29.7 6.6 45 979-1025 79-123 (166)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.3e-51 Score=464.79 Aligned_cols=421 Identities=23% Similarity=0.260 Sum_probs=398.4
Q ss_pred ccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHHhhhcccCCCC-----------------CCChHHHHHH
Q 000797 827 IDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG-----------------QHEPLRAILT 889 (1280)
Q Consensus 827 ~~~~~~laAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~~-----------------~~~P~~~~l~ 889 (1280)
.+++.++-||+++||+..+. +.+..|-..|||||.-+|+.+++..|+..+. -+.||+.+..
T Consensus 85 ~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r~~~~~al~~~~~~pc~~~ta 162 (533)
T KOG2032|consen 85 QALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSRLEDVIALLKSLVAPCHSCTA 162 (533)
T ss_pred HHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHHHHhHHHHHHhhhhHHHHhHH
Confidence 46678899999999999999 9999999999999999999999999987652 4689999999
Q ss_pred HHHHHHHhhcchHHHHHHHhcCC-CC---chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHH
Q 000797 890 SFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS 965 (1280)
Q Consensus 890 Alk~ll~~~~~~~~~~~l~~~~~-w~---~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~afls 965 (1280)
+++.+...++.+.+.+..+..++ |. ++..|+.|++-++|.|..+.++.++.|+.++.....|..+.+|++.++||+
T Consensus 163 tl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~a 242 (533)
T KOG2032|consen 163 TLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFA 242 (533)
T ss_pred HHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHH
Confidence 99999999999999999999876 98 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCch-hhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCC-hHHHHHHHH
Q 000797 966 EFVRYSGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD-ESVQLTAVS 1040 (1280)
Q Consensus 966 Ell~~~~~~-~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d-~~V~~ea~~ 1040 (1280)
|+.+.+... ..++..++..+.+..+|||..+|.+|+|||||++.+ +++.|.++++.+++.||+|.+ ++|++|||.
T Consensus 243 el~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~ 322 (533)
T KOG2032|consen 243 ELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMK 322 (533)
T ss_pred HHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999987653 467788899999999999999999999999999764 999999999999999999964 789999999
Q ss_pred HHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHH
Q 000797 1041 CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLS 1120 (1280)
Q Consensus 1041 ~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~ 1120 (1280)
+|..+++....+++++|+++++.|+|+||++|++++|.+||.+||+|+++++|++++.|.|||.+.+.||++|++|++|.
T Consensus 323 ~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~ 402 (533)
T KOG2032|consen 323 CLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY 402 (533)
T ss_pred HHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHH
Q 000797 1121 VRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAI 1199 (1280)
Q Consensus 1121 V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~ 1199 (1280)
|+.||+.++..|.+.++. .+..+|+++. +.....+.+|++..|+.|...+|+....++.....||+|.|+.+|.+|+
T Consensus 403 va~ACr~~~~~c~p~l~rke~~~~~q~~l--d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aav 480 (533)
T KOG2032|consen 403 VARACRSELRTCYPNLVRKELYHLFQESL--DTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAV 480 (533)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhhh--HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHH
Confidence 999999999999999999 9999999974 3334489999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1200 YFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1200 ~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
.+.|....++.++.+...|.+++.++|.. |.+||.|.|+..|.+|++.+.+.
T Consensus 481 l~t~~~vd~l~~~~c~~~d~~qL~~~ls~-l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 481 LKTTRSVDSLVRAACSSADGLQLRSSLST-LWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHH-HccCCCchhHHHHHHHhhhHhhc
Confidence 99999999999999999999999999999 89999999999999999998764
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.3e-13 Score=166.51 Aligned_cols=593 Identities=16% Similarity=0.166 Sum_probs=381.1
Q ss_pred HHHHHHHHhhccc-ccCCCCChhHHHHHHHHhh-hccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHH
Q 000797 493 TQALALSACTTLV-TVEPKLTIETRNHVMKATL-GFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHIL 570 (1280)
Q Consensus 493 ~r~~a~~a~~~L~-~l~P~l~~e~~~~ll~~~~-~~~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~~l 570 (1280)
+||.|-.-+..|+ +.=|.++.|.|+.+.+..+ .++.=|. ...-+.+.++..++-.+.. +++--+++
T Consensus 53 ~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~------~~vr~k~~dviAeia~~~l------~e~WPell 120 (1075)
T KOG2171|consen 53 VRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETE------PSVRHKLADVIAEIARNDL------PEKWPELL 120 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHhcc------ccchHHHH
Confidence 7888777776664 7889999999999988777 6654442 2344566677777776665 23455666
Q ss_pred HHHHHHhcChhHHhhhhHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhH
Q 000797 571 RQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNR 650 (1280)
Q Consensus 571 ~~l~pwl~S~~~hER~RA~~~i~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~L 650 (1280)
+-|.+-.+|+.+..||-|+.+...+...|-+ .. .+.+-.+
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-----------------------------~~-----------~~~~~~l 160 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGN-----------------------------TL-----------QPHLDDL 160 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-----------------------------cc-----------chhHHHH
Confidence 6667778999999999999887777664422 01 1255677
Q ss_pred HHHhhcCccCCChhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhhhcchHHHHHHhhcCCCCChhhHHHHHHHH
Q 000797 651 VIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSS 730 (1280)
Q Consensus 651 vg~l~prC~D~~~~ir~~A~~~i~~Ll~I~~~~~~~~~~~~~~d~~~~~~~l~~l~~~i~~~~~~~~~d~~~~~~~i~~~ 730 (1280)
.++|.=.-+|+...||-.|+.++.....- . . . +. ...++.++.+ |+. ++.+...
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~---~---~----~-~~----~~~~~~~~ll----------P~~-l~vl~~~ 214 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEY---L---E----N-NK----SEVDKFRDLL----------PSL-LNVLQEV 214 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHH---h---c----c-ch----HHHHHHHHHh----------HHH-HHHhHhh
Confidence 88888899999999999999999876532 1 0 0 11 1223333322 111 1111000
Q ss_pred HhhcCChhhhhchhhhhhHHHHHHHHHhhhhhhhHHHHHHHHhccccHHHHHHHhh-hChhhHHHHHHHHHHHHccCCCC
Q 000797 731 VCILLTKDEISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFS-QHAVLSFLFLEHLISALNQTPFV 809 (1280)
Q Consensus 731 ~~~~L~~~el~sL~~~~~A~~vL~~~l~~~g~e~V~eil~~i~~~l~~~~ai~~La-~h~~l~~~~l~~ll~~L~~~p~~ 809 (1280)
+.. .+..+|..+|+.+. -|+ ..|++..+++..++..-.+----
T Consensus 215 i~~----------~d~~~a~~~l~~l~--------------------------El~e~~pk~l~~~l~~ii~~~l~Ia~n 258 (1075)
T KOG2171|consen 215 IQD----------GDDDAAKSALEALI--------------------------ELLESEPKLLRPHLSQIIQFSLEIAKN 258 (1075)
T ss_pred hhc----------cchHHHHHHHHHHH--------------------------HHHhhchHHHHHHHHHHHHHHHHHhhc
Confidence 000 01223333333322 222 45666666666666533210000
Q ss_pred CCCccCCCCCCCCCCCcccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHHhhhcccCCCCCCChHHHHHH
Q 000797 810 KGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILT 889 (1280)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~laAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~~l~ 889 (1280)
++ ..+..-..|.+-|.- -. ++.+...+..|.+.-.|+.++
T Consensus 259 ~~---------------l~~~~R~~ALe~ivs---~~--e~Ap~~~k~~~~~~~~lv~~~-------------------- 298 (1075)
T KOG2171|consen 259 KE---------------LENSIRHLALEFLVS---LS--EYAPAMCKKLALLGHTLVPVL-------------------- 298 (1075)
T ss_pred cc---------------ccHHHHHHHHHHHHH---HH--HhhHHHhhhchhhhccHHHHH--------------------
Confidence 00 011111223333322 11 233334444444322222111
Q ss_pred HHHHHHHhhcchHHHHHHHhcCCCC---------chhhHHHHHHHHHHHHHhhCCh--hHHHHHHHHhhhhccccccchH
Q 000797 890 SFQAFCECVGDLEMRKILARDGEQN---------DKEKWINLIGDVAGCVSIKRPK--EVQTICLILTKSINRQQRFQRE 958 (1280)
Q Consensus 890 Alk~ll~~~~~~~~~~~l~~~~~w~---------~~~~~~~gV~lLar~l~~~~~~--~~~~il~~l~~~L~s~~~~~R~ 958 (1280)
++... . ++.+.+|. +..++.-|.+.|.| ++-+.++ .+++++.++..+++|++-++|.
T Consensus 299 -l~~mt----e------~~~D~ew~~~d~~ded~~~~~~~~A~~~lDr-lA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~ 366 (1075)
T KOG2171|consen 299 -LAMMT----E------EEDDDEWSNEDDLDEDDEETPYRAAEQALDR-LALHLGGKQVLPPLFEALEAMLQSTEWKERH 366 (1075)
T ss_pred -HHhcC----C------cccchhhccccccccccccCcHHHHHHHHHH-HHhcCChhhehHHHHHHHHHHhcCCCHHHHH
Confidence 11111 0 11112331 45688889986666 4556664 7899999999999999999999
Q ss_pred HHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hh-hhhHhHHHHHHHhhccCCCh-
Q 000797 959 AAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI-HQYATQVLSVILALLDDLDE- 1032 (1280)
Q Consensus 959 ~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v-~~~~~~lL~all~~L~d~d~- 1032 (1280)
+|+.+++....+|.+ -...++++++...++++||+|.||.+|+.++|+++.+ .+ +++++.++|+++..+++...
T Consensus 367 AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 367 AALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch
Confidence 999999999999876 3446789999999999999999999999999999865 44 55667777799999999764
Q ss_pred HHHHHHHHHHHHHhccCCcccchhhhHHHHH-HhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHH
Q 000797 1033 SVQLTAVSCLLTILKSSSKDAVEPILLNLSV-RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1111 (1280)
Q Consensus 1033 ~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~-~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1111 (1280)
.|...|..+|-+..+..+...+++|+..|.. ++.-+.++....||..+++++|+++. +.+..+.+|++.++..|.-.|
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~-AA~~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD-AAQEKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-HHhhhhHhHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999 77777888999999999999999995 667889999999888888877
Q ss_pred Hhcc-CCCHHHHHHHHHHHHhhchhhhh-hHHhhh-------ccc---CCCCC-CCCCh-HHHHHHHHHHHHHhCcchHH
Q 000797 1112 LHIY-DDDLSVRQACRNTLKQVAPFMEI-GVYGIF-------NSH---CFNSD-HRSDY-ETFVRDLTRQFVQHFPSRID 1177 (1280)
Q Consensus 1112 lHL~-D~~~~V~~ack~tL~~~a~~L~w-~l~~l~-------~~~---~~~~~-~~l~~-~~f~~~~~~~L~~~~~~~~~ 1177 (1280)
..-. ++.-.+|.+|-.+++-+|.-.|- +....- -.. ...++ ...+| -.|+..+|+.|..+|-.-..
T Consensus 526 ~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~ 605 (1075)
T KOG2171|consen 526 QNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLP 605 (1075)
T ss_pred hCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHH
Confidence 7666 45667888888888888766663 222211 111 11111 11222 55778889999887755444
Q ss_pred HHHHHHHh---h---h-------------cCCCh-----------------hHHHHHHHHHHHhhccCchhhhhhcCHHH
Q 000797 1178 SYMGSTIQ---A---F-------------EAPWP-----------------IIQANAIYFSSSILCLCDDQHILSLFYTQ 1221 (1280)
Q Consensus 1178 ~~l~~~l~---y---l-------------kS~~~-----------------~IR~aA~~fiG~l~~~~~~~~~~~~~~e~ 1221 (1280)
..+--.+. + + ...|. .=|..|.-.+|.+..++.... ..+.++
T Consensus 606 ~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F--~pYve~ 683 (1075)
T KOG2171|consen 606 VVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAF--APYVEQ 683 (1075)
T ss_pred HHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhh--hhHHHH
Confidence 33222111 0 0 01111 113445555555554433222 245677
Q ss_pred HHH-HHHHHhccCCChhhHHHHHHHHHHHHHHhhh
Q 000797 1222 VFG-LLVVKLSQSADAIVRATCSSSLGWLLKSINS 1255 (1280)
Q Consensus 1222 ~~~-~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1255 (1280)
+.. .+-. |+-...-.||..|++++..+.+.-+-
T Consensus 684 v~~l~v~~-l~f~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 684 VVELMVPL-LKFYFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred HHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 777 4444 67789999999999999999866554
No 3
>PRK09687 putative lyase; Provisional
Probab=99.16 E-value=3.1e-09 Score=121.30 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 000797 1182 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1248 (1280)
Q Consensus 1182 ~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1248 (1280)
..+.+++++. +|..|+.-+|.+. .+..+.+|+.++.++||+.|+.+|.+||..
T Consensus 227 ~Li~~L~~~~--~~~~a~~ALg~ig------------~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 227 VLIKELKKGT--VGDLIIEAAGELG------------DKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHcCCc--hHHHHHHHHHhcC------------CHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 3444566655 4556666666654 466788899943359999999999999753
No 4
>PRK09687 putative lyase; Provisional
Probab=99.15 E-value=2.2e-09 Score=122.48 Aligned_cols=224 Identities=14% Similarity=0.042 Sum_probs=113.0
Q ss_pred HHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHH
Q 000797 982 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1061 (1280)
Q Consensus 982 i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l 1061 (1280)
++.|...+.|++..||..+++.|+.++. +.+++.+...+.+.|..++..|..+|+.+...-.. ....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a 91 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNV 91 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHH
Confidence 3445555566666666666666665554 23344445555555556666666666665431100 0011
Q ss_pred HHHhccc-cccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-h
Q 000797 1062 SVRLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G 1139 (1280)
Q Consensus 1062 ~~~lr~~-fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~ 1139 (1280)
...|..+ .+|+++.||.+|+.++|.+..- +... ....+..+..++.|+++.||.++..+|+.++.--.. .
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~--~~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~ 163 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKK--NPLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPL 163 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccc--cccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHH
Confidence 1122222 4555566666666666665321 1000 001222333455566666666666666555432222 2
Q ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCH
Q 000797 1140 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFY 1219 (1280)
Q Consensus 1140 l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~ 1219 (1280)
+..++.... .+.-......|.+. +..-..-....+..++++.+.||.+|++.+|.+. .
T Consensus 164 L~~~L~d~~---------~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~------------~ 221 (280)
T PRK09687 164 LINLLKDPN---------GDVRNWAAFALNSN-KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK------------D 221 (280)
T ss_pred HHHHhcCCC---------HHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC------------C
Confidence 222222110 01111112222221 1001112222334558889999999999888753 3
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1220 TQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1220 e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
+.++..|.. .++|++ ||..|++|||.++.
T Consensus 222 ~~av~~Li~-~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 KRVLSVLIK-ELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred hhHHHHHHH-HHcCCc--hHHHHHHHHHhcCC
Confidence 567788888 677766 78899999999884
No 5
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.02 E-value=1.6e-08 Score=133.14 Aligned_cols=240 Identities=20% Similarity=0.175 Sum_probs=168.2
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHH
Q 000797 941 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1020 (1280)
Q Consensus 941 il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL 1020 (1280)
.+..|.+.|++++..-|.+|+..+.++....+. ...|...|+|+++.||..+++.|+.+.....
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------- 716 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------- 716 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH--------
Confidence 445566778899999999999999988543221 1356677889999999999999998764321
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHH
Q 000797 1021 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1100 (1280)
Q Consensus 1021 ~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~ 1100 (1280)
..++..|.|.|..|+.+|+.+|..+-. ... +..+++|+++.||.+|+..+|.+.... .
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~------~~~--------l~~~l~D~~~~VR~~aa~aL~~~~~~~---~----- 774 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDD------VES--------VAGAATDENREVRIAVAKGLATLGAGG---A----- 774 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccC------cHH--------HHHHhcCCCHHHHHHHHHHHHHhcccc---c-----
Confidence 345677889999999999999998521 111 235789999999999999999986411 1
Q ss_pred HHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchh--hhhhHHhhhcccCCCCCCCCChHHHHHH-HHHHHHHhCcchHH
Q 000797 1101 EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF--MEIGVYGIFNSHCFNSDHRSDYETFVRD-LTRQFVQHFPSRID 1177 (1280)
Q Consensus 1101 eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~--L~w~l~~l~~~~~~~~~~~l~~~~f~~~-~~~~L~~~~~~~~~ 1177 (1280)
..+..|+--++|+++.||.++-.+|+.++.- .--.+...+....| .++. ....|..-.+.
T Consensus 775 ----~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~----------~VR~~Aa~aL~~l~~~--- 837 (897)
T PRK13800 775 ----PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAW----------QVRQGAARALAGAAAD--- 837 (897)
T ss_pred ----hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCCh----------HHHHHHHHHHHhcccc---
Confidence 0123334457899999999999999998742 11112222221111 2233 33444433222
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 000797 1178 SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1247 (1280)
Q Consensus 1178 ~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1247 (1280)
.-+...+..++||.+.||.+|+..+|.+- +.+....+|.. +++|+|+.||..|++||.
T Consensus 838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-----------~~~~a~~~L~~-al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRWP-----------GDPAARDALTT-ALTDSDADVRAYARRALA 895 (897)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhccC-----------CCHHHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence 23355666889999999999999998861 12445677888 799999999999999986
No 6
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.01 E-value=1e-08 Score=135.02 Aligned_cols=242 Identities=14% Similarity=0.055 Sum_probs=167.0
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhH
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1018 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~ 1018 (1280)
.+-+..|...|++++..-|..|+..++++- .+..++.|...++|+++.||..|+.+|+.+.... .
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------~ 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT---------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------P 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc---------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------C
Confidence 347788888888888888888888888752 2667888888889999999998888888774320 0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHH
Q 000797 1019 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1098 (1280)
Q Consensus 1019 lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~ 1098 (1280)
..+++...|++.|+.|+..|+.+|+.+-. .... .+...++|+++.||.+|+..+|.+.. .
T Consensus 685 ~~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~--------~l~~~L~D~d~~VR~~Av~aL~~~~~------~-- 744 (897)
T PRK13800 685 PAPALRDHLGSPDPVVRAAALDVLRALRA----GDAA--------LFAAALGDPDHRVRIEAVRALVSVDD------V-- 744 (897)
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHH--------HHHHHhcCCCHHHHHHHHHHHhcccC------c--
Confidence 12455666777788888888888887531 1111 12236788888999999988887532 1
Q ss_pred HHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhh--h-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcc-
Q 000797 1099 FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME--I-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS- 1174 (1280)
Q Consensus 1099 ~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~--w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~- 1174 (1280)
..|+..+.|+++.||.++..+|+..+.--. . .+..++ ++.. ...-......|.+....
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll-----~D~d----~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT-----GDPD----PLVRAAALAALAELGCPP 806 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh-----cCCC----HHHHHHHHHHHHhcCCcc
Confidence 123446899999999999999998865322 1 233332 2221 22333344455444322
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1175 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1175 ~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
.+ ....+..++|+.+.||.+|+..+|.+- .++....|.. +++||++.||..|++||+.+
T Consensus 807 ~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 DD---VAAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVE-ALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hh---HHHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHH-HhcCCCHHHHHHHHHHHhcc
Confidence 22 223455788999999999999888653 2445678888 89999999999999999986
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.92 E-value=0.00078 Score=84.10 Aligned_cols=982 Identities=16% Similarity=0.166 Sum_probs=481.5
Q ss_pred hhhhhcccccchhHHHHHHHhhhccCCchhhh-cchHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhccccccCcCccee
Q 000797 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1280)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~~~~k~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i 81 (1280)
|+.||.+++--.|.-|.+=|-.=+|.+.-.++ +--+-+++.+-.+|.|.|-.|..--++.+.-++.+ -++.=+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHH
Confidence 67899999999999998877776776544444 34566777777788999999998777776666633 244446
Q ss_pred eeeeecccccCcccccccccccccCCCChhHHHHHHHhhHHHhhccchh---------hhhhhHHHHhhhccCcc-Cccc
Q 000797 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE---------MQHILWPLLLKMIIPRA-YTSA 151 (1280)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~lltttv~~---------m~~~LWP~LL~~i~p~~-yt~a 151 (1280)
++++...+-. .- ...++.|.++.=+|+++-.-++. .=.-+-|.|-.++.-.+ +.++
T Consensus 84 e~~ve~L~~~---~~-----------s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai 149 (1233)
T KOG1824|consen 84 ETIVENLCSN---ML-----------SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAI 149 (1233)
T ss_pred HHHHHHHhhh---hc-----------cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhh
Confidence 7777654421 00 12246677777677665443331 11223344444444322 2222
Q ss_pred hhhHHHHHHHHHHhhccCCCcccccccCCCCCCCHHHHHHHHHHHhcCccc-cchhHHHHHHHHHhhCCCCCchhhhhHH
Q 000797 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLA-REQQATQILMVLYYLSPLFPTNIDLFWQ 230 (1280)
Q Consensus 152 l~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~llaRllvl~~~P~~-~~~rg~~~L~lL~~l~~~i~~~l~~~W~ 230 (1280)
-|-|+-.++.--+..| ++..+|+ ..++.=++--+++|-. -..++.-.|..|-...+. ....
T Consensus 150 ---~~e~lDil~d~lsr~g-~ll~~fh--------~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~------~ly~ 211 (1233)
T KOG1824|consen 150 ---KCEVLDILADVLSRFG-TLLPNFH--------LSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR------DLYV 211 (1233)
T ss_pred ---HHHHHHHHHHHHHhhc-ccCcchH--------HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH------HHHH
Confidence 2233322322211111 1222332 1222222222333322 123455555555444443 5777
Q ss_pred hhHHHHhhhcccCCCCCCCcchHhhHHHHHHHHHHHhhhccccCcHHHHHHHHH---HhhhhcCC-CChhhHHHHHHHHH
Q 000797 231 DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAF---TEQYVLYT-PDDDHSALLHRCLG 306 (1280)
Q Consensus 231 ~~Ip~Ll~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d~~W~~~L~~el---~~ql~~y~-~~~~eK~fL~k~lG 306 (1280)
.-|..|+.-|.+.+.+ +--.++=..|-...+.+ +..+..++..-+ .+.-..-+ .+++-+-+..+.+|
T Consensus 212 ~li~~Ll~~L~~~~q~----~~~rt~Iq~l~~i~r~a-----g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 212 ELIEHLLKGLSNRTQM----SATRTYIQCLAAICRQA-----GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HHHHHHHhccCCCCch----HHHHHHHHHHHHHHHHh-----cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 8888888888776521 11123333333333332 222222222221 12111112 34455677888888
Q ss_pred HHHHhcCChh--HHHHHHHHHHHh----cCcCCcc-------------------------c-----hhhHHHHHHHHhhh
Q 000797 307 ILLQKVADRN--YVCDKIDWMYKQ----ANIAIPT-------------------------N-----RLGLAKAMGLVAAS 350 (1280)
Q Consensus 307 ~~L~~~~~~~--~V~~~L~~ll~~----~~~~~~~-------------------------e-----reG~A~~~G~~A~~ 350 (1280)
..|..|...- ++.+-+..+++- .||.... + |..-|+|+--.-++
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 8888774321 222223333321 1222211 1 88889999888888
Q ss_pred cHHHHHHHHHHHHhhhccccchhhhhhccccccccchHhHHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHHHhhhc
Q 000797 351 HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARI-DALVGTNMLSRLLHV 429 (1280)
Q Consensus 351 Hld~VL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~il~rv-e~~I~~~i~~~~~~~ 429 (1280)
|.+-+.+..+..+- ...+-||++- |.+|+-++-.|=..-.+.++-. .+. |.+- +.+ .
T Consensus 363 R~E~L~~~~q~l~p--------~lI~RfkERE-----EnVk~dvf~~yi~ll~qt~~~~--~~~~d~d~----~e~---~ 420 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGP--------ALISRFKERE-----ENVKADVFHAYIALLKQTRPVI--EVLADNDA----MEQ---G 420 (1233)
T ss_pred cHHHHHHHHHHhCH--------HHHHHHHHHh-----hhHHHHHHHHHHHHHHcCCCCc--ccccCchh----hhc---c
Confidence 88888877766654 2345577663 3678887777766655554321 000 0000 000 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCCcCCchhhhhhHHHHHHHHhhcccccCC
Q 000797 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1280)
Q Consensus 430 kd~~~K~a~l~si~~l~~av~~~~~~~~~f~f~~k~eLl~~l~~~i~~ep~~~l~s~~l~l~~~r~~a~~a~~~L~~l~P 509 (1280)
.-++-.-.+-+.+-.|.++|++. ++ | ++. + +|+.++.-++.|+.+-|
T Consensus 421 g~~s~~~~L~~~~~~iVkai~~q----------------------lr-~--ks~--k------t~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 421 GTPSDLSMLSDQVPLIVKAIQKQ----------------------LR-E--KSV--K------TRQGCFLLLTELINVLP 467 (1233)
T ss_pred CCccchHHHHhhhHHHHHHHHHH----------------------Hh-h--ccc--c------chhhHHHHHHHHHHhCc
Confidence 00111133334444555555442 22 1 122 2 67778888887777666
Q ss_pred CCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHhc-ChhH---Hhh
Q 000797 510 KLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVS-SPVE---YQR 585 (1280)
Q Consensus 510 ~l~~e~~~~ll~~~~~~~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~-S~~~---hER 585 (1280)
-.-.+....++... .|.+| ..+..-+.-+++|.-+-..+...+ |+.++.++..|.|-+. +-.+ .--
T Consensus 468 ~~l~~~~~slvpgI--~~~l~-DkSsss~~ki~~L~fl~~~L~s~~-------p~~fhp~~~~Ls~~v~~aV~d~fyKis 537 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGI--IYSLN-DKSSSSNLKIDALVFLYSALISHP-------PEVFHPHLSALSPPVVAAVGDPFYKIS 537 (1233)
T ss_pred chhhhcccccchhh--hhhcC-CccchHHHHHHHHHHHHHHHhcCC-------hhhcccchhhhhhHHHHHhcCchHhhh
Confidence 54443333333221 13333 123455667888887777777664 4777777777765431 1111 111
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH--HhhcCccCCCh
Q 000797 586 RRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI--MYLPRCADTDS 663 (1280)
Q Consensus 586 ~RA~~~i~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg--~l~prC~D~~~ 663 (1280)
.-|+.++..+.++.+. ...|+.|+.++ ..|.+.. +=-+.-.|.|.
T Consensus 538 aEAL~v~~~lvkvirp-----------------------------l~~~~~~d~~~----~v~~m~~~tl~rL~a~d~Dq 584 (1233)
T KOG1824|consen 538 AEALLVCQQLVKVIRP-----------------------------LQPPSSFDASP----YVKTMYDCTLQRLKATDSDQ 584 (1233)
T ss_pred HHHHHHHHHHHHHhcc-----------------------------cCCCccCCCCh----hHHHHHHHHHHHHhcccccH
Confidence 2233333333332211 12233343332 3343322 22245689999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhhhcchHHHHHHhhcCCCCChhhHHHHHHHHHhhcCChhhhhch
Q 000797 664 EVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDEISCL 743 (1280)
Q Consensus 664 ~ir~~A~~~i~~Ll~I~~~~~~~~~~~~~~d~~~~~~~l~~l~~~i~~~~~~~~~d~~~~~~~i~~~~~~~L~~~el~sL 743 (1280)
+||..|+.||..+..- +.. . .+. .+. .+..+++++|- +|++.|
T Consensus 585 eVkeraIscmgq~i~~--fgD----~----l~~----eL~----------------------~~L~il~eRl~-nEiTRl 627 (1233)
T KOG1824|consen 585 EVKERAISCMGQIIAN--FGD----F----LGN----ELP----------------------RTLPILLERLG-NEITRL 627 (1233)
T ss_pred HHHHHHHHHHHHHHHH--Hhh----h----hhh----hhH----------------------HHHHHHHHHHh-chhHHH
Confidence 9999999999877542 210 0 000 110 11223333322 233333
Q ss_pred hh----hhhHHHHHHHHHhhhhhhhHHHHHHHHhccc-----cHHHHHHHhhhC------hhhHHHHHHHHHHHHccCCC
Q 000797 744 AE----NTNSKIVFNEVLATAGKDIVTKDISRLRGGW-----PMQDAFHAFSQH------AVLSFLFLEHLISALNQTPF 808 (1280)
Q Consensus 744 ~~----~~~A~~vL~~~l~~~g~e~V~eil~~i~~~l-----~~~~ai~~La~h------~~l~~~~l~~ll~~L~~~p~ 808 (1280)
.. +..|...+.--+...+.+.++++.+.+|.+- +.+.++..|..+ +.++..++.++...+..
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise--- 704 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE--- 704 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH---
Confidence 22 1222222222233344456666666655441 223333333322 22333334443332210
Q ss_pred CCCCccCCCCCCCCCCCcccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHHhhhcccCCC-CCCChHHHH
Q 000797 809 VKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS-GQHEPLRAI 887 (1280)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~laAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~-~~~~P~~~~ 887 (1280)
+ .-+ +..-|.+-|..++..+.-..-+.-..+.++++.-+ ++| =..+....+
T Consensus 705 ----s----------dlh----vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll----------~Spllqg~al~~~ 756 (1233)
T KOG1824|consen 705 ----S----------DLH----VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLL----------RSPLLQGGALSAL 756 (1233)
T ss_pred ----H----------HHH----HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHh----------hCccccchHHHHH
Confidence 0 011 23344555555554431111112222223322211 111 011234556
Q ss_pred HHHHHHHHHhhcc----hHHHHHHHhcCCCC--chhhHHHHHHHHHHHHH---hhCChhHHHHHHHHhhhhcc--ccccc
Q 000797 888 LTSFQAFCECVGD----LEMRKILARDGEQN--DKEKWINLIGDVAGCVS---IKRPKEVQTICLILTKSINR--QQRFQ 956 (1280)
Q Consensus 888 l~Alk~ll~~~~~----~~~~~~l~~~~~w~--~~~~~~~gV~lLar~l~---~~~~~~~~~il~~l~~~L~s--~~~~~ 956 (1280)
+.-|+++-.+... ...+..+.. ...+ ....|.++-.-+|++.+ ...|...+++...+..-+++ .++.-
T Consensus 757 l~~f~alV~t~~~~l~y~~l~s~lt~-PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~i 835 (1233)
T KOG1824|consen 757 LLFFQALVITKEPDLDYISLLSLLTA-PVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSI 835 (1233)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHcC-CcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhH
Confidence 6666665544321 112222221 1111 32345555555665544 33444677888888887775 45777
Q ss_pred hHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHH
Q 000797 957 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQL 1036 (1280)
Q Consensus 957 R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ 1036 (1280)
|+-|+..|+|+-++-+... ....-..+++.++.|+..|+.+|-.+||+++.+...+|-|-+ ++-.+. ++.-..
T Consensus 836 kvfa~LslGElgr~~~~s~--~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfi----l~qi~s-qpk~Qy 908 (1233)
T KOG1824|consen 836 KVFALLSLGELGRRKDLSP--QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFI----LEQIES-QPKRQY 908 (1233)
T ss_pred HHHHHhhhhhhccCCCCCc--chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHH----HHHHhc-chHhHH
Confidence 7889999999887654411 111233678889999999999999999999987666664433 333322 122222
Q ss_pred HHHHHHHHHhccCCcccchhhhHHHHH----------------------------------HhccccccCChhhHHHHHH
Q 000797 1037 TAVSCLLTILKSSSKDAVEPILLNLSV----------------------------------RLRNLQVSMNVKMRRNAFA 1082 (1280)
Q Consensus 1037 ea~~~L~~ll~~l~~~~~~~~l~~l~~----------------------------------~lr~~fede~~~vR~aAi~ 1082 (1280)
--+..|..++....-....++..+|=- +|+-....+.+..|..+++
T Consensus 909 LLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvs 988 (1233)
T KOG1824|consen 909 LLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVS 988 (1233)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhh
Confidence 223333333333222223333333333 3333344455555555554
Q ss_pred HHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh----hHHh----hhc---------
Q 000797 1083 AFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI----GVYG----IFN--------- 1145 (1280)
Q Consensus 1083 lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w----~l~~----l~~--------- 1145 (1280)
+|-- .-.....++..-..+.+..++.-++|++..||+++--+|...+..=.. .+.+ +++
T Consensus 989 avKf----sisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelI 1064 (1233)
T KOG1824|consen 989 AVKF----SISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELI 1064 (1233)
T ss_pred eeee----eecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhh
Confidence 4422 222333444444556788888899999999999998888877642111 1122 111
Q ss_pred --------ccCCCCCCCCChHHHHHHHHHHHHHhCcchHHH--HHHHHHhhhcCCChhHHHHHHHHHHHhhccCchh
Q 000797 1146 --------SHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDS--YMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQ 1212 (1280)
Q Consensus 1146 --------~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~--~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~ 1212 (1280)
+|..+ ++++-+...-+..=.|...+-++++. |+.-...=+++. .+||--.-..+..+....|..
T Consensus 1065 reVeMGPFKH~VD--dgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~ 1138 (1233)
T KOG1824|consen 1065 REVEMGPFKHTVD--DGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSA 1138 (1233)
T ss_pred hhhcccCcccccc--chHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHH
Confidence 11111 23443333223333455666555544 566544555554 678876655555555555533
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.4e-06 Score=110.69 Aligned_cols=305 Identities=16% Similarity=0.187 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHhhCCh-hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhhCCCChhH
Q 000797 919 WINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTV 996 (1280)
Q Consensus 919 ~~~gV~lLar~l~~~~~~-~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l~D~~~~V 996 (1280)
....++.+...++.+.-+ .-+.++.++....+|+++..|-+|.-.|+.+...-+. ....++.+...+.+.+.||+..|
T Consensus 96 vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~v 175 (1075)
T KOG2171|consen 96 VRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPV 175 (1075)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchH
Confidence 333444444444444333 5899999999999999999999999999998776444 33467888999999999999999
Q ss_pred HHHHHhhccCCcch-----hhhhhHhHHHHHHHhhcc----CCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcc
Q 000797 997 RGLCLRGLVQIPSI-----HIHQYATQVLSVILALLD----DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1067 (1280)
Q Consensus 997 R~laLrGLg~l~~~-----~v~~~~~~lL~all~~L~----d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~ 1067 (1280)
|..|+||+|..+.. ....+...+||.++..+. +.|++...+++.+|..+++.. .+-+++++.+|..-.--
T Consensus 176 r~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~ 254 (1075)
T KOG2171|consen 176 RVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLE 254 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHH
Confidence 99999999977521 223333455666555554 456677889999999988764 45566666555433322
Q ss_pred cccc--CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhcc-CCCHHHHHHHHHHHHhhchhhhhhHHhhh
Q 000797 1068 LQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY-DDDLSVRQACRNTLKQVAPFMEIGVYGIF 1144 (1280)
Q Consensus 1068 ~fed--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~-D~~~~V~~ack~tL~~~a~~L~w~l~~l~ 1144 (1280)
-..+ -++.+|..|+..+=.+++++.+..+. ......-|+|.++++- |...+ =.| .
T Consensus 255 Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~--~~~~~~~lv~~~l~~mte~~~D---------------~ew-----~ 312 (1075)
T KOG2171|consen 255 IAKNKELENSIRHLALEFLVSLSEYAPAMCKK--LALLGHTLVPVLLAMMTEEEDD---------------DEW-----S 312 (1075)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHhhHHHhhh--chhhhccHHHHHHHhcCCcccc---------------hhh-----c
Confidence 2332 45789999999999998874332221 1224556777777633 33322 012 1
Q ss_pred cccCCCCCC-CCChHHHHHHHHHHHHHhCcchHHH--HHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHH
Q 000797 1145 NSHCFNSDH-RSDYETFVRDLTRQFVQHFPSRIDS--YMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ 1221 (1280)
Q Consensus 1145 ~~~~~~~~~-~l~~~~f~~~~~~~L~~~~~~~~~~--~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~ 1221 (1280)
+....+++. ..+|. +-....-.+.-+.|++.-. ++...-.++.|+...-|.||.+-+|.+.--..+...+ ..+.
T Consensus 313 ~~d~~ded~~~~~~~-~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~--~l~~ 389 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYR-AAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG--NLPK 389 (1075)
T ss_pred cccccccccccCcHH-HHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH--HHHH
Confidence 111122222 22332 3333344455555554322 3444556999999999999999999998665554443 3467
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1222 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1222 ~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
++..... .++||+|.||-.|--|+|.+-
T Consensus 390 Il~~Vl~-~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 390 ILPIVLN-GLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHh-hcCCCCHHHHHHHHHHHHhhh
Confidence 8888888 899999999999999999854
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=98.84 E-value=9.4e-07 Score=112.43 Aligned_cols=310 Identities=12% Similarity=0.114 Sum_probs=206.9
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCCh
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 994 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~ 994 (1280)
+...-.+|+..+...|... ..+..++-.+++.+++.+-..|...-.++..+....++... -++|.+.+-++|+||
T Consensus 45 ~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal---LaINtl~KDl~d~Np 119 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL---LAVNTFLQDTTNSSP 119 (746)
T ss_pred CHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH---HHHHHHHHHcCCCCH
Confidence 3455688888888877654 35777888888899999999999999999888664433222 257899999999999
Q ss_pred hHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCCh
Q 000797 995 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1074 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~ 1074 (1280)
.||.+|||.|+++...+ ..+.+++++.+++.|.++-|+..|..++.++.+.-. +.+. -..+..+|..++.|.++
T Consensus 120 ~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~--~~~~~~~L~~LL~D~dp 193 (746)
T PTZ00429 120 VVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFY--QQDFKKDLVELLNDNNP 193 (746)
T ss_pred HHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-cccc--ccchHHHHHHHhcCCCc
Confidence 99999999999998654 357789999999999999999999999999976432 2211 01233455667899999
Q ss_pred hhHHHHHHHHHHHhhccCC--------------------cc---------------hHHHHHHHHHhHHHHHHhccCCCH
Q 000797 1075 KMRRNAFAAFGALSNFGVG--------------------SQ---------------REAFLEQIHAMLPRLILHIYDDDL 1119 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~~~~~--------------------~~---------------~~~~~eqv~~~LvpLLlHL~D~~~ 1119 (1280)
.|..+|+.++-++...... .+ .+.-.+.++..+.| +|+-.|+
T Consensus 194 ~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~---~Lq~~N~ 270 (746)
T PTZ00429 194 VVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP---RMSHQNP 270 (746)
T ss_pred cHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---HhcCCCH
Confidence 9999999988877532110 00 00111223333444 4555789
Q ss_pred HHHHHHHHHHHhhchhhhh-hHHhhhcc------cCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCCh
Q 000797 1120 SVRQACRNTLKQVAPFMEI-GVYGIFNS------HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1192 (1280)
Q Consensus 1120 ~V~~ack~tL~~~a~~L~w-~l~~l~~~------~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~ 1192 (1280)
.|+-+|..++...++...- ....++.+ .+...+....|- .++. ...+.+.+|+.+..++..-.-.+++|..
T Consensus 271 AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyv-aLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y 348 (746)
T PTZ00429 271 AVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYI-VCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPF 348 (746)
T ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHH-HHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHH
Confidence 9999999998888764322 11221111 001112234442 2223 4667778887777765543344455553
Q ss_pred hHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1193 IIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1193 ~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
||..+.-.+-.+.+. + ..+++++-|... ..|.|+.+++.|.+|+|.+.
T Consensus 349 -IK~~KLeIL~~Lane---~-----Nv~~IL~EL~eY-a~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 349 -VKLEKLRLLLKLVTP---S-----VAPEILKELAEY-ASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred -HHHHHHHHHHHHcCc---c-----cHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHH
Confidence 777777666555433 1 235566667763 56788888888888888876
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.78 E-value=8.3e-07 Score=110.70 Aligned_cols=308 Identities=18% Similarity=0.213 Sum_probs=206.5
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCCh
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 994 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~ 994 (1280)
+...-.+++..|...+.... .+...+-.++..+.|.+-..|..+-.+++.+....++.. --+++.+.+-++|||+
T Consensus 19 ~~~~~~~~l~kli~~~~~G~--~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~---~l~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGY--DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL---ILIINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH---HHHHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHHcCC--CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH---HHHHHHHHHhhcCCCH
Confidence 45566777777776555433 355677777889999999999999999999988765522 2268999999999999
Q ss_pred hHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCCh
Q 000797 995 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1074 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~ 1074 (1280)
.+|.+|||.|++++..++ .+.+++.+...+.|.++.|+..|+.++.++... +++.+... +...+..++.|.++
T Consensus 94 ~~~~lAL~~l~~i~~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 94 YIRGLALRTLSNIRTPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDP 166 (526)
T ss_dssp HHHHHHHHHHHHH-SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSH
T ss_pred HHHHHHHhhhhhhcccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcc
Confidence 999999999999996544 477899999999999999999999999999976 33333332 45667788899999
Q ss_pred hhHHHHHHHHHHHhhccCCcchH--HHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-h-----HHhhhcc
Q 000797 1075 KMRRNAFAAFGALSNFGVGSQRE--AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-----VYGIFNS 1146 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~~~~~~~~~--~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~-----l~~l~~~ 1146 (1280)
.|+.+|+.++..+ + ..... .+..++.+.|..++ .+.+|-+....-..|...++.-.. . +..+...
T Consensus 167 ~V~~~a~~~l~~i-~---~~~~~~~~~~~~~~~~L~~~l---~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 167 SVVSAALSLLSEI-K---CNDDSYKSLIPKLIRILCQLL---SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp HHHHHHHHHHHHH-H---CTHHHHTTHHHHHHHHHHHHH---TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-c---cCcchhhhhHHHHHHHhhhcc---cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 9999999999999 2 11111 33333333333332 788888888888888877764333 2 1111111
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHhCcc--hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHH
Q 000797 1147 HCFNSDHRSDYETFVRDLTRQFVQHFPS--RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1224 (1280)
Q Consensus 1147 ~~~~~~~~l~~~~f~~~~~~~L~~~~~~--~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~ 1224 (1280)
+. ......+-+.++.+..-.+. .+...+.....++.|+.+++|-.|..-+..+....++.- . ....
T Consensus 240 --l~----s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v-~--~~~~--- 307 (526)
T PF01602_consen 240 --LQ----SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV-F--NQSL--- 307 (526)
T ss_dssp --HH----HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-G--THHH---
T ss_pred --hh----ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-h--hhhh---
Confidence 00 11133444555666553433 345677777888999999999988888877776542111 1 1111
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1225 LLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1225 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
.+.. ++.|+|+.||..|.+.|..+....|
T Consensus 308 ~~~~-l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 308 ILFF-LLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HHHH-HHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred hhhe-ecCCCChhHHHHHHHHHhhcccccc
Confidence 1222 4557777777777777666654443
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-06 Score=105.21 Aligned_cols=305 Identities=17% Similarity=0.168 Sum_probs=211.1
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHH-HHhhcc----CCcchh
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL-CLRGLV----QIPSIH 1011 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~l-aLrGLg----~l~~~~ 1011 (1280)
..-.+...+...++++....|.-|.--+.-++++......--..++..|....+|-+..-|.- ++.+.- +++ .-
T Consensus 131 ~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~ 209 (569)
T KOG1242|consen 131 SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PP 209 (569)
T ss_pred CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CC
Confidence 344556666677778888889888888888888765533333457889999999987777663 433221 232 13
Q ss_pred hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhcc
Q 000797 1012 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1091 (1280)
Q Consensus 1012 v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~ 1091 (1280)
...|.-.++|.++..+.|....|.-.|..+...++..++..++..+++++.. .++++ ...=+.+|+.++|.++. +
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~---~l~~~-kWrtK~aslellg~m~~-~ 284 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG---SLLEA-KWRTKMASLELLGAMAD-C 284 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH---HHHHH-hhhhHHHHHHHHHHHHH-h
Confidence 4557778899999999999999999999999999999999999988887644 33444 67778899999998885 3
Q ss_pred CCcchHHHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccC--CCCCCCCChHHHHHHHHH-
Q 000797 1092 VGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--FNSDHRSDYETFVRDLTR- 1166 (1280)
Q Consensus 1092 ~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~--~~~~~~l~~~~f~~~~~~- 1166 (1280)
. ..-.+..+..++|-+- -|.|-.++|+++...|+.+.+..... .+.....+.. +++-.+ .-++.+..+.+
T Consensus 285 a----p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~t 359 (569)
T KOG1242|consen 285 A----PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC-YTPECLDSLGAT 359 (569)
T ss_pred c----hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc-chHHHHHhhcce
Confidence 2 2234555667777766 69999999999999999999988777 5544433320 111100 00111111100
Q ss_pred HHHHh-CcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHH
Q 000797 1167 QFVQH-FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1245 (1280)
Q Consensus 1167 ~L~~~-~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~a 1245 (1280)
.++.. -+-.+...+--.-.-+......+++.++..+|.+....++...-......++.+|.. -..||+|.||..|+.|
T Consensus 360 tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~-~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 360 TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE-NLDDAVPEVRAVAARA 438 (569)
T ss_pred eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-HhcCCChhHHHHHHHH
Confidence 00000 001111111111223444556688999999999999997777767788899999999 7999999999999999
Q ss_pred HHHHHHHh
Q 000797 1246 LGWLLKSI 1253 (1280)
Q Consensus 1246 L~~l~k~~ 1253 (1280)
||.+.|.-
T Consensus 439 L~~l~e~~ 446 (569)
T KOG1242|consen 439 LGALLERL 446 (569)
T ss_pred HHHHHHHH
Confidence 98887543
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.67 E-value=3.1e-06 Score=115.27 Aligned_cols=270 Identities=13% Similarity=0.113 Sum_probs=200.1
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhCCCchh-hHHHH-HHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhhH
Q 000797 941 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD-SLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYA 1016 (1280)
Q Consensus 941 il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~-~l~~~-~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~~ 1016 (1280)
.+..|+.+|++++...+..|+..++-+-.+..... ...+. .++.|.+-|..+++.+|.-|.-.|+|++.+ +.+...
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45677788888888888888888877765443322 22333 788999999999999999999999999864 333323
Q ss_pred --hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCc
Q 000797 1017 --TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1094 (1280)
Q Consensus 1017 --~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~ 1094 (1280)
..+++.+++.|.+.+..+...|..+|.+++..-+.+.+. .+..++..+++.++..++..+|.+...+.+.
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~--------~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATIS--------QLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHH--------HHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 367999999999999999999999999999876555442 3345688899999999999999998744332
Q ss_pred chHHHHHHH---HHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHh
Q 000797 1095 QREAFLEQI---HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1171 (1280)
Q Consensus 1095 ~~~~~~eqv---~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~ 1171 (1280)
.+..+. .+.+.+|.--++.+++.+.+.+..+|..++.- + . +.|..++..
T Consensus 599 ---d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~-----------~---~-----------d~~~avv~a 650 (2102)
T PLN03200 599 ---DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS-----------R---Q-----------DLCESLATD 650 (2102)
T ss_pred ---HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----------C---h-----------HHHHHHHHc
Confidence 233332 35676777677788999999998888886641 0 0 112222221
Q ss_pred CcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1172 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1172 ~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
. -+-.++..+++....+|..|++-+|.+......++...+-...++..|.. |++++|+.|+..|+.||..+.+
T Consensus 651 g------aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 651 E------IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK-LAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred C------CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHc
Confidence 1 13345667888999999999999999998766665444433557888999 8999999999999999999986
Q ss_pred Hh
Q 000797 1252 SI 1253 (1280)
Q Consensus 1252 ~~ 1253 (1280)
..
T Consensus 724 ~~ 725 (2102)
T PLN03200 724 DP 725 (2102)
T ss_pred Cc
Confidence 54
No 13
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.59 E-value=3.9e-06 Score=100.49 Aligned_cols=207 Identities=11% Similarity=0.001 Sum_probs=145.3
Q ss_pred HHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHH
Q 000797 982 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1061 (1280)
Q Consensus 982 i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l 1061 (1280)
+..|.+.+.|+++.||.-+.++||.+.. +...+.++..|.+.+..|...++.+++.... +. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----~~-~~----- 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----DP-GP----- 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----Ch-HH-----
Confidence 6788889999999999999999999986 5667888889988888888888877776221 11 12
Q ss_pred HHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hH
Q 000797 1062 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV 1140 (1280)
Q Consensus 1062 ~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l 1140 (1280)
.+.++++|+++.||..|+..+|.+.. . ..+.+|...+.|+|++||.++-.++..++.--.| .+
T Consensus 151 --~L~~~L~d~d~~Vra~A~raLG~l~~---~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 151 --ALEAALTHEDALVRAAALRALGELPR---R-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred --HHHHHhcCCCHHHHHHHHHHHHhhcc---c-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 34567889999999999999999874 1 1233344569999999999999999998875556 44
Q ss_pred HhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHH
Q 000797 1141 YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYT 1220 (1280)
Q Consensus 1141 ~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e 1220 (1280)
....... | .. ....+...+..--.. ..+......++++. +|.+|+..+|++.. .
T Consensus 215 ~~~~~~~----g--~~---~~~~l~~~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p 268 (410)
T TIGR02270 215 RRFQVLE----G--GP---HRQRLLVLLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD------------V 268 (410)
T ss_pred HHHHhcc----C--cc---HHHHHHHHHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC------------c
Confidence 4422221 1 00 111222223222222 33344445677765 99999999998863 3
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1221 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1221 ~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
.....|+. +..|+. +|+.|.+|+..+-
T Consensus 269 ~av~~L~~-~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 269 EAAPWCLE-AMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred chHHHHHH-HhcCcH--HHHHHHHHHHHhh
Confidence 35566777 565554 9999999977764
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.57 E-value=1.5e-06 Score=108.41 Aligned_cols=308 Identities=19% Similarity=0.165 Sum_probs=208.1
Q ss_pred HHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccC
Q 000797 927 AGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQ 1006 (1280)
Q Consensus 927 ar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~ 1006 (1280)
+..+...++..+.-+.+.+.+-++++++.-|..|+-+++.+. .....+.+++.+.+.+.|++|.||+-|+-++..
T Consensus 66 l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~ 140 (526)
T PF01602_consen 66 LSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLK 140 (526)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 344455555567778889999999999999999999999865 235557788889999999999999999999998
Q ss_pred CcchhhhhhHhH-HHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHH
Q 000797 1007 IPSIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFG 1085 (1280)
Q Consensus 1007 l~~~~v~~~~~~-lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG 1085 (1280)
+....-. ..+. +++.+...|.|.|..|+..|+.++..+ ...++....++..+..++...+.+.++-++...+.+++
T Consensus 141 i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 141 IYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLR 217 (526)
T ss_dssp HHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred HhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 8643111 1122 688889999999999999999999999 22333323667777778888888999999999999999
Q ss_pred HHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhh-h-hHHhhhcccCCCCCCCCChHHHHHH
Q 000797 1086 ALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME-I-GVYGIFNSHCFNSDHRSDYETFVRD 1163 (1280)
Q Consensus 1086 ~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~-w-~l~~l~~~~~~~~~~~l~~~~f~~~ 1163 (1280)
.++. .....+-...+.+.+.+ .++..++.|+-.|-.++..+.+.-. + .....+.+..-..+..+.| +.-+
T Consensus 218 ~~~~---~~~~~~~~~~~i~~l~~---~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~--~~L~ 289 (526)
T PF01602_consen 218 RYAP---MEPEDADKNRIIEPLLN---LLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRY--IALD 289 (526)
T ss_dssp TSTS---SSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHH--HHHH
T ss_pred hccc---CChhhhhHHHHHHHHHH---HhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchheh--hHHH
Confidence 8765 22222211333333333 4557889999999999998877655 2 2233333321111212233 3334
Q ss_pred HHHHHHHhCcchHHHHHHHHHhhhc-CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHH
Q 000797 1164 LTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATC 1242 (1280)
Q Consensus 1164 ~~~~L~~~~~~~~~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~A 1242 (1280)
....+.+.++..+. ...-.+.+++ ++...||..|...+..+... +. .+.++..|...+..=+|+.+|..+
T Consensus 290 ~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~n-----~~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 290 SLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE---SN-----VKEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---HH-----HHHHHHHHHHHHHHC--HHHHHHH
T ss_pred HHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc---cc-----hhhHHHHHHHHHHhccchhhhhhH
Confidence 34455555555554 4444466777 88899999998877776643 22 355777777743233488899999
Q ss_pred HHHHHHHH-HHhhhcccc
Q 000797 1243 SSSLGWLL-KSINSHSWR 1259 (1280)
Q Consensus 1243 a~aL~~l~-k~~~~~~~~ 1259 (1280)
..+++.+. ++.....|-
T Consensus 361 i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 361 IKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHHHHHHHHHGSSHHHH
T ss_pred HHHHHHHHhccCchHHHH
Confidence 99999887 555554553
No 15
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=6.2e-06 Score=96.62 Aligned_cols=184 Identities=48% Similarity=0.549 Sum_probs=124.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhccCCCCCcCCchhhhhhHHHHHHHHhhcccc
Q 000797 427 LHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT 506 (1280)
Q Consensus 427 ~~~kd~~~K~a~l~si~~l~~av~~~~~~~~~f~f~~k~eLl~~l~~~i~~ep~~~l~s~~l~l~~~r~~a~~a~~~L~~ 506 (1280)
++....+.|++-+.+....+.++....+.+.-|+.+++++.++++...|..|-.. -+..+...+...+..+|++++.
T Consensus 21 ~h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~~a---~sl~~v~~~~a~~~~~~~t~vl 97 (533)
T KOG2032|consen 21 LHVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREGFA---ESLLEVLHTQALALNACTTLVL 97 (533)
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhhhh---hhhcchhhhHHHHHHHHHHHHH
Confidence 3556778899999999999999999887778899999999999999999885322 1223444578889999999999
Q ss_pred cCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCcccHHHHHHHHHHHHHHhcChhHHhhh
Q 000797 507 VEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRR 586 (1280)
Q Consensus 507 l~P~l~~e~~~~ll~~~~~~~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~hER~ 586 (1280)
.+|.++++++..+++ +|.+++.-+. +.....|.....++-++
T Consensus 98 ~e~~lti~~g~~v~~--------------lypqlf~llL------------------------llvscvlg~k~p~~lqa 139 (533)
T KOG2032|consen 98 VEPKLTIETGNRVMK--------------LYPQLFSLLL------------------------LLVSCVLGLKSPDSLQA 139 (533)
T ss_pred HHHhhhhhcCchHHH--------------hhHHHHHHHH------------------------HHHHHHhhccCcccHHH
Confidence 999999999988874 3333333222 12223333222222222
Q ss_pred hHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH-HhhcCccCCChhH
Q 000797 587 RSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDSEV 665 (1280)
Q Consensus 587 RA~~~i~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg-~l~prC~D~~~~i 665 (1280)
+....+...+++- ..++..+| .. +..|+|.+.| ..+..|+|-++.+
T Consensus 140 ~~r~~~~~al~~~-~~~pc~~~---------------------ta-----------tl~cl~lqsa~e~~~~~sde~~~~ 186 (533)
T KOG2032|consen 140 LSRLEDVIALLKS-LVAPCHSC---------------------TA-----------TLCCLILQSAEEAIQAVSDEVSRR 186 (533)
T ss_pred HHHHHhHHHHHHh-hhhHHHHh---------------------HH-----------HHHHHHHHHhHHHHHHhhhcccch
Confidence 3333344444421 11111111 11 2358999999 8999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 000797 666 RKISAQILDQLFSISLSLP 684 (1280)
Q Consensus 666 r~~A~~~i~~Ll~I~~~~~ 684 (1280)
-.++.....|...++-+++
T Consensus 187 w~qls~~~~h~~g~trlqr 205 (533)
T KOG2032|consen 187 WSQLSDNDIHRVGLTRLQR 205 (533)
T ss_pred hhhcccCcccHHHHHHHHH
Confidence 8888888888888866553
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.40 E-value=5.7e-05 Score=103.39 Aligned_cols=269 Identities=13% Similarity=0.087 Sum_probs=190.0
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHH-H-HHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhH
Q 000797 940 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-E-QMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYA 1016 (1280)
Q Consensus 940 ~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~-~-~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~ 1016 (1280)
+.+..|..+|++++..-|.-|+..++.+-.+....+..+ + .+++.|.+-+++.++.++.-|+.+|.|+..+ +.
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~---- 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA---- 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch----
Confidence 445566678888888888888888988876544434433 2 3677888888999999999999999999754 21
Q ss_pred hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhh---hHHHHHHhccccccCChhhHHHHHHHHHHHhhccCC
Q 000797 1017 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1093 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~---l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~ 1093 (1280)
..++.+.+.|...++.+...++.+|++++...+..+.... -..-...|-.+++++++.++..|..+++.+...
T Consensus 564 -~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--- 639 (2102)
T PLN03200 564 -ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--- 639 (2102)
T ss_pred -hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---
Confidence 2345566667777778888889999999876555431100 012344566788999999999999999999861
Q ss_pred cchHHHHHHHH--HhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Q 000797 1094 SQREAFLEQIH--AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1170 (1280)
Q Consensus 1094 ~~~~~~~eqv~--~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~ 1170 (1280)
.....+++. +.++|++.+|+..+.+|++.+..+|...+.-..- ....+...
T Consensus 640 --~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~------------------------ 693 (2102)
T PLN03200 640 --RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE------------------------ 693 (2102)
T ss_pred --ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc------------------------
Confidence 122233322 7899999999999999999999999886642111 11111111
Q ss_pred hCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1171 HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1171 ~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+ .+.-.+.+++++...++..|+.-++.+.++-+. ...+..+..+..|.+ ++++-.+.+|+.|+.||..|.
T Consensus 694 ---G----aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~-lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 694 ---D----AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--AAEALAEDIILPLTR-VLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred ---C----CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--HHHHHhcCcHHHHHH-HHHhCChHHHHHHHHHHHHHH
Confidence 1 112234477888899999999988888876442 222334556788999 788899999999999998887
Q ss_pred HH
Q 000797 1251 KS 1252 (1280)
Q Consensus 1251 k~ 1252 (1280)
+.
T Consensus 764 ~~ 765 (2102)
T PLN03200 764 KH 765 (2102)
T ss_pred hC
Confidence 53
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00072 Score=81.73 Aligned_cols=313 Identities=16% Similarity=0.197 Sum_probs=195.6
Q ss_pred HHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc--hhhHHHHHHHHHHhhhCCCChhHHHHHH
Q 000797 924 GDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCL 1001 (1280)
Q Consensus 924 ~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~laL 1001 (1280)
..||+..- ...++-++-++-..|.+.+=..|-+++.+++..-.+|.. ... +-.+++.|.+.+.|-.|.||.+..
T Consensus 380 DVLanvf~---~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 380 DVLANVFG---DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHHHhccCccceeeeee
Confidence 33665432 234555555556667777777788888888877776644 222 346799999999999999999998
Q ss_pred hhccCCcch----hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc---CCh
Q 000797 1002 RGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS---MNV 1074 (1280)
Q Consensus 1002 rGLg~l~~~----~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed---e~~ 1074 (1280)
=.|++-+.. .-.+|...+|..++..+-|.+..|.-.|++++..+-+..+.+ +.+|+-.|..++---|.+ .|-
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcce
Confidence 888877643 445788889999999999999999999999999999887654 556887887777666665 333
Q ss_pred hhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH---hccCCCHHHH----------HH--------HHHHHHhhc
Q 000797 1075 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL---HIYDDDLSVR----------QA--------CRNTLKQVA 1133 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl---HL~D~~~~V~----------~a--------ck~tL~~~a 1133 (1280)
-+=.-||+.|.+-. |..-.+..|.+- .++||+- -|.|++.++- +| |..+..||.
T Consensus 535 lILYDAIgtlAdsv--g~~Ln~~~Yiqi---LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~ 609 (885)
T KOG2023|consen 535 LILYDAIGTLADSV--GHALNKPAYIQI---LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCF 609 (885)
T ss_pred ehHHHHHHHHHHHH--HHhcCcHHHHHH---hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence 34444444444422 223344455444 3455554 5888887764 22 445556666
Q ss_pred hhhhhhHHhhhccc--CCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHH------HHhhhcCCChhHHHHHHHHHHHh
Q 000797 1134 PFMEIGVYGIFNSH--CFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGS------TIQAFEAPWPIIQANAIYFSSSI 1205 (1280)
Q Consensus 1134 ~~L~w~l~~l~~~~--~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~------~l~ylkS~~~~IR~aA~~fiG~l 1205 (1280)
.++.--+..+...+ .-.+...-+|-..--|+..-|.+-.++.+..++.+ .+.-++++-+++|+.|--++|-+
T Consensus 610 ~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDl 689 (885)
T KOG2023|consen 610 RILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDL 689 (885)
T ss_pred HHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 66553222222111 00000011111112355566666666666666655 45568999999999999999999
Q ss_pred hccCchhhhhhcCHHHHHHHHHHHhccCCC-hhhHHHHHHHHHHHH
Q 000797 1206 LCLCDDQHILSLFYTQVFGLLVVKLSQSAD-AIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1206 ~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpd-p~VR~~Aa~aL~~l~ 1250 (1280)
.+..++.-.. ..+..+..+-. .-||+ -+|--.|..|+|.+.
T Consensus 690 tk~c~~~v~p--~~~~fl~~lg~--Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 690 TKACFEHVIP--NLADFLPILGA--NLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred HHHHHHhccc--hHHHHHHHHhh--cCChhhchHHHHHHHHHHHHH
Confidence 8765433221 22333332222 22333 456778888888765
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.27 E-value=0.00057 Score=84.92 Aligned_cols=295 Identities=19% Similarity=0.197 Sum_probs=191.5
Q ss_pred HhhhhccccccchHHHH-HHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhh---h-hhHhHH
Q 000797 945 LTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---H-QYATQV 1019 (1280)
Q Consensus 945 l~~~L~s~~~~~R~~a~-aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v---~-~~~~~l 1019 (1280)
+...+++. .++.+..+ ..+..++... ....+.......|..+|.+|++.||.++++.+++++.+.. . -....+
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 33444433 44444433 4555665532 2334467788999999999999999999999999876521 1 122567
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhh-hHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHH
Q 000797 1020 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1098 (1280)
Q Consensus 1020 L~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~-l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~ 1098 (1280)
++.++..+.+.|..|...|+.+|.++...- .....+ -.++...|..++...++.+|.-...++..+++. ..+.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~----S~~~ 194 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH----SPEA 194 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc----CHHH
Confidence 999999999999999999999999999752 222222 123366778888888999999999999999862 2233
Q ss_pred HHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhh-------h----hHHhhhcccCCCCCC---CCChHHHHHH
Q 000797 1099 FLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFME-------I----GVYGIFNSHCFNSDH---RSDYETFVRD 1163 (1280)
Q Consensus 1099 ~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~-------w----~l~~l~~~~~~~~~~---~l~~~~f~~~ 1163 (1280)
+..-+-..+.+.++ -+.++|.-|+..|-..|..+|..-. . .+..++... .++. .+...-.++-
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~--~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS--EEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc--ccCCcccchhhhhHHHH
Confidence 32222234666666 5899999999999999999875211 1 122222221 1111 1122223322
Q ss_pred HHHHHHHhCcc----hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhh-hc---CHHHHHHHHHHHhccCCC
Q 000797 1164 LTRQFVQHFPS----RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL-SL---FYTQVFGLLVVKLSQSAD 1235 (1280)
Q Consensus 1164 ~~~~L~~~~~~----~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~-~~---~~e~~~~~L~~~Ll~Dpd 1235 (1280)
++..... .|. .+..|+......+.|..+.++..|.--+|.+.....-.+.- .. ..+.+..+.-. ..+...
T Consensus 273 ~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~-~~~~~~ 350 (503)
T PF10508_consen 273 FGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD-AIKSGS 350 (503)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH-HhcCCc
Confidence 2332221 222 33456666677889999999999999999998654432222 11 23445555555 466678
Q ss_pred hhhHHHHHHHHHHHHH
Q 000797 1236 AIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1236 p~VR~~Aa~aL~~l~k 1251 (1280)
..+|.++-.|++.+..
T Consensus 351 ~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 351 TELKLRALHALASILT 366 (503)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 8999999999999974
No 19
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=3.8e-05 Score=92.34 Aligned_cols=292 Identities=17% Similarity=0.180 Sum_probs=190.3
Q ss_pred HHHHhhhhccccccchHHHHHHHHHhhhCC---CchhhHHHHHHHHHHhhhC-CCChhHHHHHHhhccCCcchhhhh---
Q 000797 942 CLILTKSINRQQRFQREAAAAALSEFVRYS---GGFDSLLEQMVEALCRHVS-DESPTVRGLCLRGLVQIPSIHIHQ--- 1014 (1280)
Q Consensus 942 l~~l~~~L~s~~~~~R~~a~aflsEll~~~---~~~~~l~~~~i~~L~~~l~-D~~~~VR~laLrGLg~l~~~~v~~--- 1014 (1280)
+..+...+.|.+..++.+++..|-.++... +.......-+++.+...+. +.+|.+|.-|.-+|.||+.+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 445556667888888999999999988753 2222222347888888884 888999999999999999861111
Q ss_pred -hHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHH--HHHHhccccccCC-hhhHHHHHHHHHHHhhc
Q 000797 1015 -YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQVSMN-VKMRRNAFAAFGALSNF 1090 (1280)
Q Consensus 1015 -~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~--l~~~lr~~fede~-~~vR~aAi~lfG~L~~~ 1090 (1280)
-....+|.++..+.+++.+|.-.|..+|++|...- ...+.+.++ +...|-.++.+.. ..++..+.-++..+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds--~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS--PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC--hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc-
Confidence 11345888999999999999999999999998642 222322221 2222333444433 4677777777777765
Q ss_pred cCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchh----------hhh--hHHhhhcccCCCCCCCCChH
Q 000797 1091 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----------MEI--GVYGIFNSHCFNSDHRSDYE 1158 (1280)
Q Consensus 1091 ~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~----------L~w--~l~~l~~~~~~~~~~~l~~~ 1158 (1280)
|+...|=++++...|+-|..+++..|++|..-+..|+.-++.- .|. .+.+++.... + ...-
T Consensus 225 --gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~---~-~v~~- 297 (514)
T KOG0166|consen 225 --GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS---P-KVVT- 297 (514)
T ss_pred --CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC---c-cccc-
Confidence 6666777889999999999999999999998888888766521 111 2222222210 0 0000
Q ss_pred HHHHHHH---------HHHHHhCcchHHHHHHHHHhhhc-CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHH
Q 000797 1159 TFVRDLT---------RQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVV 1228 (1280)
Q Consensus 1159 ~f~~~~~---------~~L~~~~~~~~~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~ 1228 (1280)
-.++.+- ...+-. . -.+......+. ||-..||..|+|+++-+.-. ..+++..+=..-++..|+.
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~-~----~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVIN-S----GALPVLSNLLSSSPKESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred HHHhhccceeeccHHHHHHHHh-c----ChHHHHHHHhccCcchhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHH
Confidence 0000000 000000 0 12223334455 77788999999999988864 3344444433467788999
Q ss_pred HhccCCChhhHHHHHHHHHHHH
Q 000797 1229 KLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1229 ~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+++.-|-..|+.|+-|++.+-
T Consensus 372 -~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 372 -LLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred -HHhccchHHHHHHHHHHHhhc
Confidence 788888999999999998754
No 20
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=8.8e-05 Score=93.97 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccc
Q 000797 976 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1054 (1280)
Q Consensus 976 ~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~ 1054 (1280)
...+.+++.+..-..|+++.||.+..-+..++... ...+-.+.++|..+.++.|.+..|......-++.+....+..++
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc
Confidence 34455678888889999999999999888877543 22233466789999999988888999888888888888888888
Q ss_pred hhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhc
Q 000797 1055 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1055 ~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a 1133 (1280)
..+.-++-..+..+-+|-...+|.+.+..+=.++. ..| ..|+++- +.+++. -+.|-.-++|.+|...+...+
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~-q~~---~~~~~~~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL-QLG---VEFFDEK---LAELLRTWLPDHVYSIREAAARNLPALV 546 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH-hhh---hHHhhHH---HHHHHHhhhhhhHHHHHHHHHHHhHHHH
Confidence 88888888888888888889999999999888875 111 3344443 444444 478889999999999999999
Q ss_pred hhhh--h-hHHhhhcccCCCCCC-CCChHHHHHHHHHHHHHhCcchH--HHHHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 000797 1134 PFME--I-GVYGIFNSHCFNSDH-RSDYETFVRDLTRQFVQHFPSRI--DSYMGSTIQAFEAPWPIIQANAIYFSSSILC 1207 (1280)
Q Consensus 1134 ~~L~--w-~l~~l~~~~~~~~~~-~l~~~~f~~~~~~~L~~~~~~~~--~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~ 1207 (1280)
..+| | ....+..... .+++ ++-|+.-.-+-+..|..=+...+ ..++--.....++|-++||-+|+.++=-++.
T Consensus 547 ~~~G~~w~~~~~i~k~L~-~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 547 ETFGSEWARLEEIPKLLA-MDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred HHhCcchhHHHhhHHHHH-HhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 9999 8 4444333321 1121 13333333333445554444432 3355566678899999999999999988888
Q ss_pred cCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1208 LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1208 ~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
.+..... .+.+..+++. |.+|+|..||-+|..|++.+.
T Consensus 626 ~L~~~~~----~~~v~pll~~-L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 626 LLDESVR----DEEVLPLLET-LSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hcchHHH----HHHHHHHHHH-hccCcccchhHHHHHHHHHHH
Confidence 7775443 4788999999 899999999999999998765
No 21
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=9.7e-05 Score=88.98 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=146.0
Q ss_pred HhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcc
Q 000797 1016 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1095 (1280)
Q Consensus 1016 ~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~ 1095 (1280)
...+||++...+++.|+.|...|+.+++-+.+.-.+..-.-+-..++.++-.++++.+..++..|.++.|.++. |.+
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt---G~d 311 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT---GSD 311 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee---ccH
Confidence 36789999999999999999999999999997755443333444678888999999999999999999999775 433
Q ss_pred hHHHHHHHH-HhHHHHHHhcc--CCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Q 000797 1096 REAFLEQIH-AMLPRLILHIY--DDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1170 (1280)
Q Consensus 1096 ~~~~~eqv~-~~LvpLLlHL~--D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~ 1170 (1280)
. ..+.|+ ....|.+.++- -+...+++.|..++..++. |. ...++++.. +
T Consensus 312 ~--QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~------------l---------- 365 (514)
T KOG0166|consen 312 E--QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN------------L---------- 365 (514)
T ss_pred H--HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc------------c----------
Confidence 2 222222 44555555432 3445589989999998876 33 444454431 1
Q ss_pred hCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1171 HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1171 ~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+-..+.-+++..-.+|..|+|.|+-+...-+++++..+-..-+++.|-. |+.=+|+.+-..+-.||+.+.
T Consensus 366 ---------~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd-lL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 366 ---------IPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD-LLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred ---------HHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh-cccCCChHHHHHHHHHHHHHH
Confidence 1123345556668899999999998887766777655543448888999 777788888888999999998
Q ss_pred HHhhhc
Q 000797 1251 KSINSH 1256 (1280)
Q Consensus 1251 k~~~~~ 1256 (1280)
|.-...
T Consensus 436 ~~~e~~ 441 (514)
T KOG0166|consen 436 KVGEAE 441 (514)
T ss_pred HHHHHh
Confidence 775543
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.08 E-value=0.01 Score=72.60 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHh-----cCCCC-----chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccc
Q 000797 885 RAILTSFQAFCECVGDLEMRKILAR-----DGEQN-----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQR 954 (1280)
Q Consensus 885 ~~~l~Alk~ll~~~~~~~~~~~l~~-----~~~w~-----~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~ 954 (1280)
.+.+..+|.-+.+.|-+......+. ..-|. +-..|.+-|. .+-.++.+.+ ..++++-++--+.+..+
T Consensus 654 kivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~-ttv~ia~KvG--~~~~v~R~v~~lkde~e 730 (1172)
T KOG0213|consen 654 KIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVD-TTVEIAAKVG--SDPIVSRVVLDLKDEPE 730 (1172)
T ss_pred HHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHH-HHHHHHHHhC--chHHHHHHhhhhccccH
Confidence 3455555555544444332222221 13454 3444555554 6667777655 34566666677789999
Q ss_pred cchHHHHHHHHHhhhCCCc---hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhcc
Q 000797 955 FQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLD 1028 (1280)
Q Consensus 955 ~~R~~a~aflsEll~~~~~---~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~ 1028 (1280)
..|..++...+..+..-+. ...+-+.++..++..++.....+- .-|.|+|-+... .++.|.+++...++..|.
T Consensus 731 ~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 731 QYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 9999998888887775432 334455666666666655544444 456788766543 678899999999999999
Q ss_pred CCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHH
Q 000797 1029 DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLP 1108 (1280)
Q Consensus 1029 d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~Lv 1108 (1280)
.+...|+..|....+.|...+..-+-...+-.+-.-|--.++.|.++|=.+-..++-++.++.+.....|=..+++-.|-
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 99889988777777666555544444445555555566788999999999888888888775444444444445555555
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhc
Q 000797 1109 RLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE 1188 (1280)
Q Consensus 1109 pLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylk 1188 (1280)
|. |+.-...|...|-+-++++|-. +. +..+..|+++ ||=- .+..+|
T Consensus 890 PI---LknrheKVqen~IdLvg~Iadr--------------gp-E~v~aREWMR-Icfe---------------LlelLk 935 (1172)
T KOG0213|consen 890 PI---LKNRHEKVQENCIDLVGTIADR--------------GP-EYVSAREWMR-ICFE---------------LLELLK 935 (1172)
T ss_pred Hh---hhhhHHHHHHHHHHHHHHHHhc--------------Cc-ccCCHHHHHH-HHHH---------------HHHHHH
Confidence 54 5667778999998888887741 11 2345567763 3332 355788
Q ss_pred CCChhHHHHHHHHHHHhhccCchhhh-------------hh-----c---------CHHHHHHHHHHHhccCCChhhHHH
Q 000797 1189 APWPIIQANAIYFSSSILCLCDDQHI-------------LS-----L---------FYTQVFGLLVVKLSQSADAIVRAT 1241 (1280)
Q Consensus 1189 S~~~~IR~aA~~fiG~l~~~~~~~~~-------------~~-----~---------~~e~~~~~L~~~Ll~Dpdp~VR~~ 1241 (1280)
|-...||+||+--.|++.+...++.. .+ + +.-.+..+|.. ==+-|+-.|+..
T Consensus 936 ahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmn-eYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 936 AHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMN-EYRTPEANVQNG 1014 (1172)
T ss_pred HHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHh-hccCchhHHHHh
Confidence 88999999999999999876554443 11 0 11123444444 234599999999
Q ss_pred HHHHHHHHHHHhh
Q 000797 1242 CSSSLGWLLKSIN 1254 (1280)
Q Consensus 1242 Aa~aL~~l~k~~~ 1254 (1280)
.-.||++++.+..
T Consensus 1015 VLkalsf~Feyig 1027 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIG 1027 (1172)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0001 Score=88.64 Aligned_cols=272 Identities=19% Similarity=0.253 Sum_probs=198.5
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchh-hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcc---hhhh
Q 000797 938 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD-SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIH 1013 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~-~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~---~~v~ 1013 (1280)
+..++-.+..+.+++...-|.-|++..-.++-.....- .-+++.+..|....+|++|.||+-..|++.-+.. +++.
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 33444445566778888888888887766654433322 2357778888888899999999999999997764 3777
Q ss_pred hhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC-cccchhhhHHHHHHhc----------cccc------------
Q 000797 1014 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPILLNLSVRLR----------NLQV------------ 1070 (1280)
Q Consensus 1014 ~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~-~~~~~~~l~~l~~~lr----------~~fe------------ 1070 (1280)
.|-..++.-++..-.|.|++|.+||+.=...+-+.-- .+.+.+++.+|..-|. .+++
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 7788999999999999999999999998888875543 3456677777776652 1222
Q ss_pred --------------------------c--------CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-hcc
Q 000797 1071 --------------------------S--------MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIY 1115 (1280)
Q Consensus 1071 --------------------------d--------e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~ 1115 (1280)
| .+..+|.-+..+++-+++ .|.++++..+.|++- ||.
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcC
Confidence 1 014588888888888876 377889999999998 899
Q ss_pred CCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHH
Q 000797 1116 DDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQ 1195 (1280)
Q Consensus 1116 D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR 1195 (1280)
-++--|+.+.-.|||.+|. | ++ +.+..+.|+.+..++ ..+.|.|+-||
T Consensus 404 ~~~W~vrEagvLAlGAIAE-----------------G-cM----------~g~~p~LpeLip~l~----~~L~DKkplVR 451 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAE-----------------G-CM----------QGFVPHLPELIPFLL----SLLDDKKPLVR 451 (885)
T ss_pred cchhhhhhhhHHHHHHHHH-----------------H-Hh----------hhcccchHHHHHHHH----HHhccCcccee
Confidence 9999999999999999884 2 11 223444454444444 36889999999
Q ss_pred HHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1196 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1196 ~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
.-..|-++...+..-.++. +....-+...|.. .+-|..-.|+.+|-.|+..+-+
T Consensus 452 sITCWTLsRys~wv~~~~~-~~~f~pvL~~ll~-~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQDSR-DEYFKPVLEGLLR-RLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred eeeeeeHhhhhhhHhcCCh-HhhhHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHH
Confidence 9999999888876655442 2223444455555 4669999999999998876653
No 24
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.05 E-value=0.00023 Score=85.45 Aligned_cols=193 Identities=17% Similarity=0.066 Sum_probs=130.6
Q ss_pred HHHHHHHHhhh-CCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhh
Q 000797 979 EQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1057 (1280)
Q Consensus 979 ~~~i~~L~~~l-~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~ 1057 (1280)
...+..|...+ .|+++.|+..+..++..... +..+.+++..|+|.++.|..++..+|+.+-. ...
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----~~a--- 118 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----RQA--- 118 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----hHH---
Confidence 34567788888 68999999999999876553 2348889999999999999999999987543 222
Q ss_pred hHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhh
Q 000797 1058 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME 1137 (1280)
Q Consensus 1058 l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~ 1137 (1280)
...|.++++++++.||.+++.+.|.-.. . ...+++-.|+|+++.|+.++-.+|+.+..--.
T Consensus 119 ----~~~L~~~L~~~~p~vR~aal~al~~r~~-----~----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a 179 (410)
T TIGR02270 119 ----EPWLEPLLAASEPPGRAIGLAALGAHRH-----D----------PGPALEAALTHEDALVRAAALRALGELPRRLS 179 (410)
T ss_pred ----HHHHHHHhcCCChHHHHHHHHHHHhhcc-----C----------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc
Confidence 2345577899999999999988887221 1 12345555789999999999999998654211
Q ss_pred h-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcc--------
Q 000797 1138 I-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL-------- 1208 (1280)
Q Consensus 1138 w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~-------- 1208 (1280)
. .+. .+++|+.+.||++|+.-+|.+...
T Consensus 180 ~~~L~-------------------------------------------~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~ 216 (410)
T TIGR02270 180 ESTLR-------------------------------------------LYLRDSDPEVRFAALEAGLLAGSRLAWGVCRR 216 (410)
T ss_pred hHHHH-------------------------------------------HHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 1 222 234555555555555444433210
Q ss_pred -Cc----hh------hhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1209 -CD----DQ------HILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1209 -~~----~~------~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
.. +. -+...+.+.....|+. +++|++ ||..|+.|+|.++
T Consensus 217 ~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~-ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 217 FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE-LLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HHhccCccHHHHHHHHHHhCCchhHHHHHHH-HhcChh--hHHHHHHHHHHcC
Confidence 00 00 0001133466777888 788876 9999999999877
No 25
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0022 Score=79.13 Aligned_cols=290 Identities=15% Similarity=0.133 Sum_probs=182.1
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHh
Q 000797 938 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYAT 1017 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~ 1017 (1280)
+...|-.+.+...+.+..-|...-..+..+-...++...+. ++.+.+.|+|||+.+|..|||.|+.|... .-.|
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS---IntfQk~L~DpN~LiRasALRvlSsIRvp---~IaP 142 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS---INTFQKALKDPNQLIRASALRVLSSIRVP---MIAP 142 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee---HHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHH
Confidence 44444445555555554444444444444444444444443 78999999999999999999999988753 2356
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh--------
Q 000797 1018 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-------- 1089 (1280)
Q Consensus 1018 ~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~-------- 1089 (1280)
.+|-|+-+.-.|...-|+..|..|+-++-. ++.+.-. +|..-|..++.|.++.|=.+|+.+|-.++.
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHk 217 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHK 217 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhH
Confidence 778888888888888899999999999754 4443322 455567788999999999999999877653
Q ss_pred --------------------------ccCCcch--------------------------HHH-----HHHHHHhHHHHHH
Q 000797 1090 --------------------------FGVGSQR--------------------------EAF-----LEQIHAMLPRLIL 1112 (1280)
Q Consensus 1090 --------------------------~~~~~~~--------------------------~~~-----~eqv~~~LvpLLl 1112 (1280)
|++.... .|+ ..-.+++.-||
T Consensus 218 nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpL-- 295 (968)
T KOG1060|consen 218 NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPL-- 295 (968)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHH--
Confidence 0000000 010 01123333343
Q ss_pred hccCCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChH-----------------------------HHH
Q 000797 1113 HIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYE-----------------------------TFV 1161 (1280)
Q Consensus 1113 HL~D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~-----------------------------~f~ 1161 (1280)
++-.|++|+.||..++.++||..+. ..+++.+- +.+.+...|- ...
T Consensus 296 -l~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL--Lrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~ 372 (968)
T KOG1060|consen 296 -LQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL--LRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQ 372 (968)
T ss_pred -HhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH--HhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHH
Confidence 3567889999999999999998777 33444442 2333222220 000
Q ss_pred HHHHHHHH---HhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhh
Q 000797 1162 RDLTRQFV---QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIV 1238 (1280)
Q Consensus 1162 ~~~~~~L~---~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~V 1238 (1280)
-.++|.=+ --+-..+...+.....|.+|+...+=++|+.-||.-.+....-. +...+.|.. |++..|..|
T Consensus 373 vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~------~tCL~gLv~-Llsshde~V 445 (968)
T KOG1060|consen 373 VKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT------DTCLNGLVQ-LLSSHDELV 445 (968)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh------hHHHHHHHH-HHhcccchh
Confidence 01111111 01234555666667889999999899999999998876433111 445567777 666677777
Q ss_pred HHHHHHHHHHHH
Q 000797 1239 RATCSSSLGWLL 1250 (1280)
Q Consensus 1239 R~~Aa~aL~~l~ 1250 (1280)
-+.|.-.+..|.
T Consensus 446 v~eaV~vIk~Ll 457 (968)
T KOG1060|consen 446 VAEAVVVIKRLL 457 (968)
T ss_pred HHHHHHHHHHHH
Confidence 776666655543
No 26
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0012 Score=81.12 Aligned_cols=306 Identities=16% Similarity=0.168 Sum_probs=181.0
Q ss_pred hhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCch-h-hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---
Q 000797 936 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-D-SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--- 1010 (1280)
Q Consensus 936 ~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~-~-~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--- 1010 (1280)
..+++++.++-..+++++=++|-+|+..|+-.+.+|... . ....+.++.+.+...||+..||..+--.+|.++.+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 368889999989999999999999999999999987552 2 33466889999999999999999999999998764
Q ss_pred --hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccch--------hhhHHHHHHhcccccc---CChhhH
Q 000797 1011 --HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE--------PILLNLSVRLRNLQVS---MNVKMR 1077 (1280)
Q Consensus 1011 --~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~--------~~l~~l~~~lr~~fed---e~~~vR 1077 (1280)
.-..+-+.++++++.||.| .+.|.-.++.++-.+.+...+...+ +++..|...|-.-=+- ....+|
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR 518 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLR 518 (859)
T ss_pred hcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHH
Confidence 1244668889999999987 5778888888888887554333333 4666665555332222 557899
Q ss_pred HHHHHHHHHHhhccCCcchHHHHHH-------HHHhHHHHHHhccCCCH--HHHHHHHHHHHhhchhhhh-------hHH
Q 000797 1078 RNAFAAFGALSNFGVGSQREAFLEQ-------IHAMLPRLILHIYDDDL--SVRQACRNTLKQVAPFMEI-------GVY 1141 (1280)
Q Consensus 1078 ~aAi~lfG~L~~~~~~~~~~~~~eq-------v~~~LvpLLlHL~D~~~--~V~~ack~tL~~~a~~L~w-------~l~ 1141 (1280)
.+|++++|.+.+++.........+- +.+++-.=++.+.|... ++..-=..+|..+-.-++. .+-
T Consensus 519 ~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM 598 (859)
T KOG1241|consen 519 SAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIM 598 (859)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHH
Confidence 9999999999997654333222111 11222211221222110 0111111111111111110 111
Q ss_pred hhhcccCCCCCC-CCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhc----C-CChhHHHHHHHHHHHhhccCchhhhh
Q 000797 1142 GIFNSHCFNSDH-RSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE----A-PWPIIQANAIYFSSSILCLCDDQHIL 1215 (1280)
Q Consensus 1142 ~l~~~~~~~~~~-~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylk----S-~~~~IR~aA~~fiG~l~~~~~~~~~~ 1215 (1280)
.+|-+- ++..+ +.--++.+-.+ ..|+.+.....-.|+..-.+|+- . ....+-.+|+-++|-+.+.+.++..
T Consensus 599 ~lflri-~~s~~s~~v~e~a~laV-~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~- 675 (859)
T KOG1241|consen 599 GLFLRI-FESKRSAVVHEEAFLAV-STLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL- 675 (859)
T ss_pred HHHHHH-HcCCccccchHHHHHHH-HHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 111110 11111 11112222222 23444444444445555444442 2 2345889999999999998887776
Q ss_pred hcCHHHHHHHHHHHhccCCC-------hhhHHHHHHHHH
Q 000797 1216 SLFYTQVFGLLVVKLSQSAD-------AIVRATCSSSLG 1247 (1280)
Q Consensus 1216 ~~~~e~~~~~L~~~Ll~Dpd-------p~VR~~Aa~aL~ 1247 (1280)
...+.+.+-|.. .++.|. +...++.-.||.
T Consensus 676 -py~d~~mt~Lvq-~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 676 -PYCDELMTVLVQ-CLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred -hHHHHHHHHHHH-HccCccccccccchHHHHHHHHHHH
Confidence 445566666666 555443 334455555543
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=97.91 E-value=0.004 Score=79.94 Aligned_cols=255 Identities=11% Similarity=0.097 Sum_probs=133.5
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hhh
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIH 1013 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~ 1013 (1280)
.+..++..+.+.+.+.+..=|.+|+..+..+....+.. ......++.|.+.+.|+||.|..-|+..|-.+... ...
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence 33444444455555555555555555555544322210 11122445555555555555555555555544321 111
Q ss_pred hhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCC
Q 000797 1014 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1093 (1280)
Q Consensus 1014 ~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~ 1093 (1280)
.....+.-++..|.+.++--+...+..|.+- ..++ ..-...+..++.|.+.+.|+.|-.+|+.+|=.+....
T Consensus 216 -l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y----~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-- 287 (746)
T PTZ00429 216 -SSNEWVNRLVYHLPECNEWGQLYILELLAAQ----RPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-- 287 (746)
T ss_pred -HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC--
Confidence 1111223334444333333333333333221 1111 1223467777888899999999999999999887532
Q ss_pred cchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhch----hhhhhHHhhhcccCCCCCCCCChHHHHHHH--HHH
Q 000797 1094 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP----FMEIGVYGIFNSHCFNSDHRSDYETFVRDL--TRQ 1167 (1280)
Q Consensus 1094 ~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~----~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~--~~~ 1167 (1280)
...+.+++..-+.+.++-|...+++++-.+-..+..+.. ++.-.+...|.+. .|. .| ++.. --.
T Consensus 288 --~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~--~Dp---~y---IK~~KLeIL 357 (746)
T PTZ00429 288 --SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY--SDP---PF---VKLEKLRLL 357 (746)
T ss_pred --CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc--CCc---HH---HHHHHHHHH
Confidence 134666766555443334445566777665555544432 1111223333431 221 12 2211 111
Q ss_pred HHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc
Q 000797 1168 FVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1168 L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
..--.++.+...+.....|..+....+++.|+.-||.+...++
T Consensus 358 ~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 358 LKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 1223567788888999999999999999999999999986554
No 28
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.88 E-value=0.00024 Score=83.66 Aligned_cols=110 Identities=26% Similarity=0.293 Sum_probs=85.9
Q ss_pred HHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhH
Q 000797 980 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1059 (1280)
Q Consensus 980 ~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~ 1059 (1280)
..+..+.+.+.|+++.||..+..-+|.++. +..++.+...+.|.+..|+..|..+|+++-.. ..+ +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a~-~~-- 109 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGDP---EAV-PP-- 109 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hHH-HH--
Confidence 456788888899999999999999999886 56689999999999999999999988876642 222 22
Q ss_pred HHHHHhccccc-cCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHH
Q 000797 1060 NLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1121 (1280)
Q Consensus 1060 ~l~~~lr~~fe-de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V 1121 (1280)
+..+++ |++..||..|...+|.+.. . +.+.|++-.++|++..+
T Consensus 110 -----li~~l~~d~~~~vR~~aa~aL~~~~~---~-----------~a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 110 -----LVELLENDENEGVRAAAARALGKLGD---E-----------RALDPLLEALQDEDSGS 153 (335)
T ss_pred -----HHHHHHcCCcHhHHHHHHHHHHhcCc---h-----------hhhHHHHHHhccchhhh
Confidence 234455 8999999999999999764 1 24778888888877443
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0012 Score=86.28 Aligned_cols=326 Identities=16% Similarity=0.177 Sum_probs=215.3
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHH-HHHhhhCCCc-hhhHHHHHHHHHHhhhCCC
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA-LSEFVRYSGG-FDSLLEQMVEALCRHVSDE 992 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~af-lsEll~~~~~-~~~l~~~~i~~L~~~l~D~ 992 (1280)
...||-+-.. ||.-|.+ | .+++.+...-++.--+.-.-++|| |+.+...... .+-.++++++.|.+.--||
T Consensus 938 ~isTYKELc~-LASdl~q--P----dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP 1010 (1702)
T KOG0915|consen 938 KISTYKELCN-LASDLGQ--P----DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDP 1010 (1702)
T ss_pred cchHHHHHHH-HHhhcCC--h----HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCC
Confidence 4566777665 8886643 4 444444455444443333444444 4444444433 3445688999999999999
Q ss_pred ChhHHHHHHhhccCCc--ch--hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccc
Q 000797 993 SPTVRGLCLRGLVQIP--SI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1068 (1280)
Q Consensus 993 ~~~VR~laLrGLg~l~--~~--~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~ 1068 (1280)
++.|+..- ..+.|.. +. -+.+|...++.-++.+|-+..=.|+-.++.||..+++.-+.+.+.--++++=..++.-
T Consensus 1011 ~~~Vq~aM-~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1011 DKKVQDAM-TSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred cHHHHHHH-HHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 99998643 3344332 22 4688999999999999988777899999999999999988888888899999999999
Q ss_pred cccCChhhHHHHHHHHHHHhhccCC---cchHHHHHHHHHhHHHHHH--hccCCCHHHHHHHHHHHHhhchhhhhhHHhh
Q 000797 1069 QVSMNVKMRRNAFAAFGALSNFGVG---SQREAFLEQIHAMLPRLIL--HIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1143 (1280)
Q Consensus 1069 fede~~~vR~aAi~lfG~L~~~~~~---~~~~~~~eqv~~~LvpLLl--HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l 1143 (1280)
.||-.+.||.+|=.+-..+++.+.. .....=-.+++.++.|+++ |.--.-++||..|-.|+-.++..-|-.++.-
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~ 1169 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH 1169 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch
Confidence 9999999999998776666553211 1111122578899999998 5556677999999999888876554422222
Q ss_pred hccc------CCCCCCCCChHHHHHHHHHHHHHhCcchHHHH-------------HHHHHhhhc----------------
Q 000797 1144 FNSH------CFNSDHRSDYETFVRDLTRQFVQHFPSRIDSY-------------MGSTIQAFE---------------- 1188 (1280)
Q Consensus 1144 ~~~~------~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~-------------l~~~l~ylk---------------- 1188 (1280)
+.+. +..+-+ +..++-+.-.+.+...+.++.. +.-|++|.+
T Consensus 1170 ~~~LIp~ll~~~s~lE----~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1170 FPKLIPLLLNAYSELE----PQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR 1245 (1702)
T ss_pred hhHHHHHHHHHccccc----hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 2111 011100 1111111111122222222211 111333433
Q ss_pred CC-ChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhhh
Q 000797 1189 AP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1255 (1280)
Q Consensus 1189 S~-~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1255 (1280)
++ --.-|-++|.||-.+.+.+..|+. ....-++.++.. ..+|-.+.||+.-|-|+|+|.|++.-
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~~~emt--P~sgKll~al~~-g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRLGSEMT--PYSGKLLRALFP-GAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHhccccC--cchhHHHHHHhh-ccccccHHHHHHHHHHHHHHHhcCCh
Confidence 22 234688899999999887666554 344567888888 89999999999999999999998864
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.76 E-value=0.00049 Score=76.36 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=113.8
Q ss_pred CCChHHHHHHHHHHHHHhccC-Ccccchhh---hHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000797 1029 DLDESVQLTAVSCLLTILKSS-SKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1104 (1280)
Q Consensus 1029 d~d~~V~~ea~~~L~~ll~~l-~~~~~~~~---l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~ 1104 (1280)
+.|=+.+.+|+..|..++..- .......+ +..+...+-..+.|.|..|-..|..+++.++... +...+++ +-
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~~~~~~---~~ 93 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GSHFEPY---AD 93 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GGGGHHH---HH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hHhHHHH---HH
Confidence 344568899999999998764 22222332 2233356667888999999999999999999743 3344554 44
Q ss_pred HhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 000797 1105 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTI 1184 (1280)
Q Consensus 1105 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l 1184 (1280)
..+++|+-.+.|.+..|++++..||..+....+. ....+ ..-..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------------------~~~~~------------------~~~l~ 137 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSY------------------SPKIL------------------LEILS 137 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------------------HHH------------------HHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------------------HHHHH------------------HHHHH
Confidence 4666777789999999999999998886642110 01110 11123
Q ss_pred hhhcCCChhHHHHHHHHHHHhhccCc--hhhhhh-cCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1185 QAFEAPWPIIQANAIYFSSSILCLCD--DQHILS-LFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1185 ~ylkS~~~~IR~aA~~fiG~l~~~~~--~~~~~~-~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
...++..+.+|..++.++..++...+ ...+.. ...+.+.+.+.. ++.|++|.||..|.+++..+.+.
T Consensus 138 ~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 138 QGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 36688899999999999999998777 232221 234778999999 89999999999999999988754
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.73 E-value=0.00038 Score=77.30 Aligned_cols=188 Identities=19% Similarity=0.205 Sum_probs=117.9
Q ss_pred ccccccchHHHHHHHHHhhhCC--Cc-hhhH---HHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHH
Q 000797 950 NRQQRFQREAAAAALSEFVRYS--GG-FDSL---LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVL 1020 (1280)
Q Consensus 950 ~s~~~~~R~~a~aflsEll~~~--~~-~~~l---~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL 1020 (1280)
++.+=..|..|+--+-.++.+. .. .... ++.++..+...++|.+..|-+.|+..++.++.. .+..+...++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4455556788888888887765 11 2222 344557888999999999999999999988754 7788899999
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhccCC-cccchhhhHHH-HHHhccccccCChhhHHHHHHHHHHHhhccCCcchHH
Q 000797 1021 SVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPILLNL-SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1098 (1280)
Q Consensus 1021 ~all~~L~d~d~~V~~ea~~~L~~ll~~l~-~~~~~~~l~~l-~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~ 1098 (1280)
|.++.-+.+....|.-.|..+|..+..... .. .+ ...+.+...+.++.+|..+...+..+..... .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~-~~~~~ 168 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP-------KILLEILSQGLKSKNPQVREECAEWLAIILEKWG-SDSSV 168 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H---------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT------GG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc-chHhh
Confidence 999999999888899999999999998765 22 22 3345667899999999999999999987332 01111
Q ss_pred HHH-HHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhhhHHhhhc
Q 000797 1099 FLE-QIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1145 (1280)
Q Consensus 1099 ~~e-qv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~ 1145 (1280)
+.. ..+..+++.+. .+.|.+++||+++|.+|..+....+-.-..+++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 221 12334444444 579999999999999999986654444344443
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.71 E-value=0.35 Score=61.59 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=109.7
Q ss_pred hhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhch
Q 000797 1055 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1134 (1280)
Q Consensus 1055 ~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1134 (1280)
.+...++...++. .+.++.+|..|+--||.+.+...-.....|+. -.+-.++-++.+|..|+.+|||.++.
T Consensus 816 ~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~-------~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 816 KSLATKLIQDLQS--PKSSDSIKVFALLSLGELGRRKDLSPQNELKD-------TIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred hhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhccCCCCCcchhhHH-------HHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 3444444444444 46788999999999999987322222222222 23346788999999999999999986
Q ss_pred -hhhhhHHhhhcccCCCCC---------------CCCC-hHHHHHHHHHHHHHhCcch---HH----------------H
Q 000797 1135 -FMEIGVYGIFNSHCFNSD---------------HRSD-YETFVRDLTRQFVQHFPSR---ID----------------S 1178 (1280)
Q Consensus 1135 -~L~w~l~~l~~~~~~~~~---------------~~l~-~~~f~~~~~~~L~~~~~~~---~~----------------~ 1178 (1280)
.+.-.+..+++.-.-+.. ...+ +.+.+.+||..|.+++.+. .. .
T Consensus 887 gnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes 966 (1233)
T KOG1824|consen 887 GNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES 966 (1233)
T ss_pred CchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH
Confidence 333322222211000000 0111 1234567777777655331 11 1
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcC--HHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1179 YMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF--YTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1179 ~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~--~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
++-..-.++.|+.+..|..++..+-|.+..-+ ..+| ..+-++.+.. +.+|||+.||+.|-.++.-..
T Consensus 967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p----~~id~~lk~~ig~fl~-~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQP----QPIDPLLKQQIGDFLK-LLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred HHHHHHHHhcCCCcchhhhhhheeeeeecCCC----CccCHHHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHH
Confidence 23334457899999999999987777775322 1122 2334456666 799999999999999976544
No 33
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.67 E-value=0.0021 Score=75.76 Aligned_cols=260 Identities=21% Similarity=0.202 Sum_probs=168.1
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhH
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1018 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~ 1018 (1280)
+.....+...+.+.+..-|..|+..++++- .+..++.|.+.+.|+++.||..+..+||++.. +.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 356777778888887777777776655531 24567888999999999999999999999997 45
Q ss_pred HHHHHHhhcc-CCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCC------------hhhHHHHHHHHH
Q 000797 1019 VLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN------------VKMRRNAFAAFG 1085 (1280)
Q Consensus 1019 lL~all~~L~-d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~------------~~vR~aAi~lfG 1085 (1280)
.++.++..+. |.+..|+..|..+|.++-.. ..+.+++ ....++. ..+|.+|+..+|
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~---~a~~~l~--------~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE---RALDPLL--------EALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch---hhhHHHH--------HHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 5677777777 67888999999999988753 2232222 1223322 268999999999
Q ss_pred HHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHH
Q 000797 1086 ALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLT 1165 (1280)
Q Consensus 1086 ~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~ 1165 (1280)
.+.. . ....++.-++.|++..||.++..+|+.++....+....+... .++. . ...-....
T Consensus 175 ~~~~---~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~--~~~~-~---~~vr~~~~ 234 (335)
T COG1413 175 ELGD---P-----------EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKA--LSDE-S---LEVRKAAL 234 (335)
T ss_pred HcCC---h-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHH--hcCC-C---HHHHHHHH
Confidence 8764 1 133455567899999999999999999887643311111111 1111 1 00111222
Q ss_pred HHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHH
Q 000797 1166 RQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1245 (1280)
Q Consensus 1166 ~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~a 1245 (1280)
..|......+ -......++++....++..++...|. .+.......+.. ...|.+..+|..++.+
T Consensus 235 ~~l~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 298 (335)
T COG1413 235 LALGEIGDEE---AVDALAKALEDEDVILALLAAAALGA------------LDLAEAALPLLL-LLIDEANAVRLEAALA 298 (335)
T ss_pred HHhcccCcch---hHHHHHHHHhccchHHHHHHHHHhcc------------cCchhhHHHHHH-HhhcchhhHHHHHHHH
Confidence 2333322222 22333457777777777777765551 111222233555 6788999999999999
Q ss_pred HHHHHHHhhhcccccc
Q 000797 1246 LGWLLKSINSHSWRST 1261 (1280)
Q Consensus 1246 L~~l~k~~~~~~~~~~ 1261 (1280)
++..+......-|-..
T Consensus 299 l~~~~~~~~~~a~~~~ 314 (335)
T COG1413 299 LGQIGQEKAVAALLLA 314 (335)
T ss_pred HHhhcccchHHHHHHH
Confidence 9888876666555443
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.54 E-value=0.011 Score=73.75 Aligned_cols=279 Identities=20% Similarity=0.225 Sum_probs=183.8
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHH-HHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhh
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQY 1015 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~ 1015 (1280)
..++..+...+.+++..--..|+.++..+..++.....+. ...+..|.+.+..+|..+|.-++.-+.+++.+ +...+
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4677778888889998889999999999998775543332 22467777777777888888888888888754 33344
Q ss_pred HhH--HHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHH--HHHHhccccccCChhhHHHHH------HHHH
Q 000797 1016 ATQ--VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQVSMNVKMRRNAF------AAFG 1085 (1280)
Q Consensus 1016 ~~~--lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~--l~~~lr~~fede~~~vR~aAi------~lfG 1085 (1280)
... +++.+++.|++.|.-+.+.++..|..+.. ...+. .|+.+ +..+|-..+.+...+-|..++ ..||
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~-~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGL-QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHH-HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 333 89999999999777788999999999987 23332 22222 344444555443322244444 4566
Q ss_pred HHhhccCCcchHHHHHHHHHhHHHHHHh-ccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHH
Q 000797 1086 ALSNFGVGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDL 1164 (1280)
Q Consensus 1086 ~L~~~~~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~ 1164 (1280)
.++.+ ....+. +.+..++..+++ +...|+..+..+-+||+.+|.. .+|
T Consensus 275 ~la~~----~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst--------------~~G------------ 323 (503)
T PF10508_consen 275 NLARV----SPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST--------------VEG------------ 323 (503)
T ss_pred HHHhc----ChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC--------------HHH------------
Confidence 66642 111122 233344444454 5677999999999999998852 112
Q ss_pred HHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCch---hhhhhcCHHH--------HHHHHHHHhccC
Q 000797 1165 TRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD---QHILSLFYTQ--------VFGLLVVKLSQS 1233 (1280)
Q Consensus 1165 ~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~---~~~~~~~~e~--------~~~~L~~~Ll~D 1233 (1280)
...|..+.++.....+.....+.++...++|..|..-++.++..-++ +++..+...+ ....+.. +.+-
T Consensus 324 ~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~-~~~q 402 (503)
T PF10508_consen 324 KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS-LLKQ 402 (503)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH-HhcC
Confidence 12234666777788888888899999999999999999998753332 2221111111 1115666 7888
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 000797 1234 ADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1234 pdp~VR~~Aa~aL~~l~k~ 1252 (1280)
|=|.+|+.|=.-|.-+..+
T Consensus 403 PF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CchHHHHHHHHHHHHHhcC
Confidence 9999999877666555543
No 35
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.04 Score=68.36 Aligned_cols=302 Identities=14% Similarity=0.104 Sum_probs=177.3
Q ss_pred HHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChh-HHHHHHhhccCCcch----hhhhhHh
Q 000797 943 LILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT-VRGLCLRGLVQIPSI----HIHQYAT 1017 (1280)
Q Consensus 943 ~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~-VR~laLrGLg~l~~~----~v~~~~~ 1017 (1280)
..+...|.|+..+.+-+|.-.++..-. -.....+-..++..|.+...++.+. ||..+|.++|-+..+ .+.....
T Consensus 93 ~~il~tL~~~ep~~~s~Aaq~va~IA~-~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN 171 (859)
T KOG1241|consen 93 NNILRTLGSPEPRRPSSAAQCVAAIAC-IELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN 171 (859)
T ss_pred HHHHHHcCCCCCCccchHHHHHHHHHH-hhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 344566666666655444433332211 1111122233456677777777776 999999999988754 4455667
Q ss_pred HHHHHHHhhccCCC--hHHHHHHHHHHHHHhccCC----cccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhcc
Q 000797 1018 QVLSVILALLDDLD--ESVQLTAVSCLLTILKSSS----KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1091 (1280)
Q Consensus 1018 ~lL~all~~L~d~d--~~V~~ea~~~L~~ll~~l~----~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~ 1091 (1280)
.+|.|++.|....+ ..|++.|..+|-+-++... .+.=+.|+.+++ .---..++.+||.+||.-|-.+..
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvv---cEatq~~d~~i~~aa~~ClvkIm~-- 246 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVV---CEATQSPDEEIQVAAFQCLVKIMS-- 246 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeee---eecccCCcHHHHHHHHHHHHHHHH--
Confidence 88999999998754 5699999999988886543 122223332221 111234678999999998888875
Q ss_pred CCcchHHHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHH-hhch-----------------------------hhhhhH
Q 000797 1092 VGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLK-QVAP-----------------------------FMEIGV 1140 (1280)
Q Consensus 1092 ~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~-~~a~-----------------------------~L~w~l 1140 (1280)
-..+.+..=+.++|.++-+ -++.++++|+-.+-.=.+ .|.- .+-..+
T Consensus 247 --LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 247 --LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 1122222223345555554 577788888854443333 1111 111122
Q ss_pred HhhhcccC-CCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHh-hhcCCChhHHHHHHHHHHHhhccCchhhhhhcC
Q 000797 1141 YGIFNSHC-FNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPWPIIQANAIYFSSSILCLCDDQHILSLF 1218 (1280)
Q Consensus 1141 ~~l~~~~~-~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~-ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~ 1218 (1280)
-+++.++. =.+++..+--.........+.+...|.+-..+.--+. -+++|...=|-+|++..|.++..-+...+ +.-
T Consensus 325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L-t~i 403 (859)
T KOG1241|consen 325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL-TPI 403 (859)
T ss_pred HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh-hHH
Confidence 23333321 0011111111111111223345555554443333222 56799999999999999999876554443 334
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1219 YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1219 ~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
..+....++. +..||.--||..|+.++|++.++..
T Consensus 404 V~qalp~ii~-lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 404 VIQALPSIIN-LMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred HhhhhHHHHH-HhcCchhhhcchHHHHHHHHHhhch
Confidence 5677788888 6779999999999999999987655
No 36
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.023 Score=69.53 Aligned_cols=299 Identities=13% Similarity=0.102 Sum_probs=184.0
Q ss_pred ChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---h
Q 000797 935 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---H 1011 (1280)
Q Consensus 935 ~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~ 1011 (1280)
-|.+.+++-.+..-..+....-|-+|.-...-++++-.. .-.+.+++.+...+.+..-.-...+++++|.++.. .
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 357777777777777677777777777666666665322 11233344444555444556777888888877654 6
Q ss_pred hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcc------------------------
Q 000797 1012 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN------------------------ 1067 (1280)
Q Consensus 1012 v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~------------------------ 1067 (1280)
.....+.++|.+.+.|.|+...|...+..+|.++...++..++.++...+...+.+
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAP 368 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecch
Confidence 67778888999999999888888888888888888888887777777766655531
Q ss_pred -----------ccccCChhhHHHHHHHHHHHhhcc-CCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchh
Q 000797 1068 -----------LQVSMNVKMRRNAFAAFGALSNFG-VGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1135 (1280)
Q Consensus 1068 -----------~fede~~~vR~aAi~lfG~L~~~~-~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1135 (1280)
=+.+-+..++..++..+|.+++-. ...+-.+|...++..+-. .+.|..|+||..+.+||+..-.=
T Consensus 369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~---~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE---NLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH---HhcCCChhHHHHHHHHHHHHHHH
Confidence 123455677888888999998754 444556665554433333 36788999999999999665433
Q ss_pred hhh-h-------HHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhh--hcCCChhHHHHHHHHHHHh
Q 000797 1136 MEI-G-------VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA--FEAPWPIIQANAIYFSSSI 1205 (1280)
Q Consensus 1136 L~w-~-------l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~y--lkS~~~~IR~aA~~fiG~l 1205 (1280)
+|- . +.+...-+. .+..+.. -..+++..+....-+....++...+.+ ..-.|+.+|-.=++|++++
T Consensus 446 ~g~~~f~d~~p~l~e~~~~~k-~~~~~~g---~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~l 521 (569)
T KOG1242|consen 446 LGEVSFDDLIPELSETLTSEK-SLVDRSG---AAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLL 521 (569)
T ss_pred HHhhcccccccHHHHhhccch-hhhhhHH---HhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhcc
Confidence 333 1 112111110 0000111 122233333333333444444444443 3445667998888888776
Q ss_pred hccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHH
Q 000797 1206 LCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1245 (1280)
Q Consensus 1206 ~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~a 1245 (1280)
--....+.- ...-+++..+.. =+-|.|+.+|..+-++
T Consensus 522 p~~~~~~~~--~yi~~i~~~~~k-~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 522 PYIFGFQFQ--PYIHEILDEFLK-GLADNDEKGRDTALEA 558 (569)
T ss_pred chhhhHHhH--HHHHHHHHHHHH-HhhhcCCccccchhhh
Confidence 544443332 233445555555 3558999999887766
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.52 E-value=0.00024 Score=66.21 Aligned_cols=86 Identities=27% Similarity=0.332 Sum_probs=64.2
Q ss_pred HHHHHhhh-CCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHH
Q 000797 982 VEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN 1060 (1280)
Q Consensus 982 i~~L~~~l-~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~ 1060 (1280)
++.|.+.+ +|+++.||..+++.||++.. +.+++.++..+.|.+..|+..|+.+|+++.. ...-+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~---- 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIP---- 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHH----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHH----
Confidence 35677777 89999999999999998875 4668888888888889999999999998742 22222
Q ss_pred HHHHhcccc-ccCChhhHHHHHHHHH
Q 000797 1061 LSVRLRNLQ-VSMNVKMRRNAFAAFG 1085 (1280)
Q Consensus 1061 l~~~lr~~f-ede~~~vR~aAi~lfG 1085 (1280)
.|...+ ++++..||.+|+..+|
T Consensus 66 ---~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ---ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHcCCCcHHHHHHHHhhcC
Confidence 233334 4456677999998876
No 38
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.03 Score=73.85 Aligned_cols=320 Identities=11% Similarity=0.128 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHhhcchHHH-HHHHhc---CCCCchhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhcc-ccccc---h
Q 000797 886 AILTSFQAFCECVGDLEMR-KILARD---GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINR-QQRFQ---R 957 (1280)
Q Consensus 886 ~~l~Alk~ll~~~~~~~~~-~~l~~~---~~w~~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s-~~~~~---R 957 (1280)
++..=|-+|-+-.|.-+.. ++|+.- --|++..+.--|...++. .....+.|-+..++|-|-+ .+++. +
T Consensus 940 sTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~----~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK----QAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH----HHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 4455555555666777755 677653 479877777778775554 3344555566666665544 33443 3
Q ss_pred HHHHHHHHHhhhCCC-chhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch----hhhhhHhHHHHHHHhhccCCCh
Q 000797 958 EAAAAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDE 1032 (1280)
Q Consensus 958 ~~a~aflsEll~~~~-~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~----~v~~~~~~lL~all~~L~d~d~ 1032 (1280)
-+-+.+---++..+. ........++.-|.-.+.+-.-.||..|.-+|..+-.+ ++.+..+.+..++...+||--+
T Consensus 1016 ~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE 1095 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE 1095 (1702)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444554431 12334455777788888999999999999998887543 7777888999999999998655
Q ss_pred HHH---HHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc-----CChhhHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000797 1033 SVQ---LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1104 (1280)
Q Consensus 1033 ~V~---~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed-----e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~ 1104 (1280)
.|+ -.+..+|+++.-.+..-+=+.-..+++--+-||+=| .=.+||..++...-+++++.++ .-.|+ .
T Consensus 1096 sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~-~lkP~----~ 1170 (1702)
T KOG0915|consen 1096 SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK-ELKPH----F 1170 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh-hhcch----h
Confidence 544 667888888876655443333334445555677555 4479999999999999997654 33333 2
Q ss_pred HhHHHHHHhccCC-CHHHH-----------HHH--------------HHHHHhhchhhhh-hHHhhhccc------CCCC
Q 000797 1105 AMLPRLILHIYDD-DLSVR-----------QAC--------------RNTLKQVAPFMEI-GVYGIFNSH------CFNS 1151 (1280)
Q Consensus 1105 ~~LvpLLlHL~D~-~~~V~-----------~ac--------------k~tL~~~a~~L~w-~l~~l~~~~------~~~~ 1151 (1280)
.-|+|+++..-++ ++.|- +.+ -.|+..|-+.... .+.++.-+- -.+-
T Consensus 1171 ~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl 1250 (1702)
T KOG0915|consen 1171 PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGL 1250 (1702)
T ss_pred hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC
Confidence 4566666654444 33432 111 2455666665555 444433221 0111
Q ss_pred CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhh
Q 000797 1152 DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1214 (1280)
Q Consensus 1152 ~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~ 1214 (1280)
+-+.....|+--+.+.+.++..-...-++..++.-+++-.+.+|++=+.-.|++.+...+++.
T Consensus 1251 ~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1251 GTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred CcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH
Confidence 223446778878888888888788889999999999999999999999999999998776664
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.32 E-value=0.0052 Score=65.83 Aligned_cols=112 Identities=25% Similarity=0.253 Sum_probs=92.6
Q ss_pred chHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHH
Q 000797 956 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQ 1035 (1280)
Q Consensus 956 ~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~ 1035 (1280)
=|..++..++.|.... ....+..++.+.+.|+|++|.||+.|+..|.++...+.-+...+++..++..+.|.|++|+
T Consensus 4 vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 3677888888876643 2456777899999999999999999999999998775555567777888999999999999
Q ss_pred HHHHHHHHHHhccCCcccchhhhHHHHHHhccccc
Q 000797 1036 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1070 (1280)
Q Consensus 1036 ~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fe 1070 (1280)
..|...+..+....++..+...++.+..++-..-+
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~ 115 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYE 115 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccc
Confidence 99999999999987788888888888777765543
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.30 E-value=0.0016 Score=60.62 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=63.1
Q ss_pred HHHHHhc-cCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhh
Q 000797 1108 PRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1186 (1280)
Q Consensus 1108 vpLLlHL-~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~y 1186 (1280)
.+|+-.| +|+++.||..+..+|+.++. ++. +...+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------------~~~-------------------~~~L~~~ 39 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-----------------------PEA-------------------IPALIEL 39 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------------HHH-------------------HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------------HhH-------------------HHHHHHH
Confidence 3455567 89999999999888885321 112 2223446
Q ss_pred hcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 000797 1187 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1247 (1280)
Q Consensus 1187 lkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1247 (1280)
++|+.+.||.+|+..+|.+. .+.....|...+.+|++..||..|++|||
T Consensus 40 l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 40 LKDEDPMVRRAAARALGRIG------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 68999999999999999873 35566777775667788899999999987
No 41
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.29 E-value=0.016 Score=67.50 Aligned_cols=213 Identities=17% Similarity=0.115 Sum_probs=132.7
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHh-ccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh-ccCCcchH
Q 000797 1020 LSVILALLDDLDESVQLTAVSCLLTIL-KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQRE 1097 (1280)
Q Consensus 1020 L~all~~L~d~d~~V~~ea~~~L~~ll-~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~-~~~~~~~~ 1097 (1280)
|.-.++.+.++....+.+|+.++.+++ .+.-.+.+......|+-.+...+.+.+.+=+..|..++|-++= .+.|...+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 445556666666667777777777776 3333344445555666666666777776777888888888863 34456666
Q ss_pred HHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHH
Q 000797 1098 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1177 (1280)
Q Consensus 1098 ~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~ 1177 (1280)
.+++++...|.+.+. -....+.+|.+|..||+.|+-+-+-...++... -+-+..++....-+-.+.
T Consensus 125 ei~~~~~~~L~~~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~-----------~~~le~if~~~~~~~~~~-- 190 (309)
T PF05004_consen 125 EIFEELKPVLKRILT-DSSASPKARAACLEALAICTFVGGSDEEETEEL-----------MESLESIFLLSILKSDGN-- 190 (309)
T ss_pred HHHHHHHHHHHHHHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHH-----------HHHHHHHHHHHhcCcCCC--
Confidence 777776666666443 223356788999999999875321111111000 011111111111000000
Q ss_pred HHHHHHHhhhc-CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1178 SYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1178 ~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
.+... .+.+.+..+|..--|+++..+++..+. ...+..+..|.. |+..+|..||..|.+++..+++..+
T Consensus 191 ------~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 191 ------APVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ------cccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 00111 234679999988889999999886655 234667888999 8899999999999999999998877
No 42
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.28 E-value=0.16 Score=61.18 Aligned_cols=378 Identities=13% Similarity=0.088 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHH--HHHHhhhccc---CCCCCCChHHHHHHHHHHHHHhhcchHHH--
Q 000797 832 LQAAILALTAFFRGGGKVGKKAVEKSYAPVLAAL--TLQLGSCHGL---ASSGQHEPLRAILTSFQAFCECVGDLEMR-- 904 (1280)
Q Consensus 832 ~laAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aL--L~ql~~~~~l---~~~~~~~P~~~~l~Alk~ll~~~~~~~~~-- 904 (1280)
.-||.|.-|.++... ...++++--+.==|. +.|.-.-+|- .+ .-+|.+ -.-|+ +||-+..-.+-.
T Consensus 154 ~saalv~aYhLlp~~----~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~P--n~~~is-qYHal-GlLyq~kr~dkma~ 225 (898)
T COG5240 154 RSAALVVAYHLLPNN----FNQTKRWLNETQEAVLDLKQFPNQHGNEGYEP--NGNPIS-QYHAL-GLLYQSKRTDKMAQ 225 (898)
T ss_pred hhhHHHHhhhhcccc----HHHHHHHHHHHHHHHhhHhhCcCccCCcccCC--CCChHH-HHHHH-HHHHHHhcccHHHH
Confidence 348899999999885 233333322221111 3333222221 11 123422 22333 344444333222
Q ss_pred -HHHHhcCCCCchhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhcccc----ccchHHHHHHHHHhhhCCCchhhHHH
Q 000797 905 -KILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ----RFQREAAAAALSEFVRYSGGFDSLLE 979 (1280)
Q Consensus 905 -~~l~~~~~w~~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~----~~~R~~a~aflsEll~~~~~~~~l~~ 979 (1280)
+.++.-.+..+-..-+-||. |.|+.+.-. .+....+.++.|+|++-. +.-.+-++-..+.+-... ......+
T Consensus 226 lklv~hf~~n~smknq~a~V~-lvr~~~~ll-~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~ 302 (898)
T COG5240 226 LKLVEHFRGNASMKNQLAGVL-LVRATVELL-KENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD 302 (898)
T ss_pred HHHHHHhhcccccccchhhee-hHHHHHHHH-HhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH
Confidence 33332233322223334443 444443321 134455556666665532 322222222222221112 2234567
Q ss_pred HHHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchh
Q 000797 980 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1056 (1280)
Q Consensus 980 ~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~ 1056 (1280)
+.+..|...|+.+....|-.|+|-|.+++.. ++.---+. ++ +.+.|.+..|...|+..|-+-. ..+.+
T Consensus 303 ~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e-vE---sLIsd~Nr~IstyAITtLLKTG---t~e~i-- 373 (898)
T COG5240 303 QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE-VE---SLISDENRTISTYAITTLLKTG---TEETI-- 373 (898)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh-HH---HHhhcccccchHHHHHHHHHcC---chhhH--
Confidence 8899999999999999999999999998742 33111111 12 2233445667777666665533 23433
Q ss_pred hhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhh
Q 000797 1057 ILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1136 (1280)
Q Consensus 1057 ~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L 1136 (1280)
-.+..+|..|..|.++..+.-+|.+..+|+-.-.. .+ .-.+..|...|+ ++..-+-.++.-+|+..+-.+-
T Consensus 374 --drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k~----~s~l~FL~~~L~--~eGg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 374 --DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-KK----LSYLDFLGSSLL--QEGGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred --HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-HH----HHHHHHHHHHHH--hcccchHHHHHHHHHHHHHhhC
Confidence 46677788999999999999999999999851111 11 223444555443 3556677777777777766554
Q ss_pred -hh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhC-----cchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcc
Q 000797 1137 -EI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-----PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL 1208 (1280)
Q Consensus 1137 -~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~-----~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~ 1208 (1280)
.. ..-+.++.. .+| -.|.+..-+|...|.++- |+++-.++-. -+-=....||.+|+.-+..+.-+
T Consensus 445 p~skEraLe~LC~f-IED---cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyN---R~iLEN~ivRsaAv~aLskf~ln 517 (898)
T COG5240 445 PDSKERALEVLCTF-IED---CEYHQITVRILGILGREGPRAKTPGKYVRHIYN---RLILENNIVRSAAVQALSKFALN 517 (898)
T ss_pred chHHHHHHHHHHHH-Hhh---cchhHHHHHHHHHhcccCCCCCCcchHHHHHHH---HHHHhhhHHHHHHHHHHHHhccC
Confidence 22 222344443 222 346667777778887655 4454444433 33334567999999877666544
Q ss_pred CchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1209 CDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1209 ~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
..+-- ..+.+..+|.+ -+.|.|-.||.+|+-++..+.
T Consensus 518 ~~d~~----~~~sv~~~lkR-clnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 518 ISDVV----SPQSVENALKR-CLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccccc----cHHHHHHHHHH-HhhcccHHHHHHHHHHHHhhh
Confidence 33222 24667788888 899999999999999998876
No 43
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.28 E-value=0.0071 Score=77.74 Aligned_cols=245 Identities=15% Similarity=0.225 Sum_probs=154.3
Q ss_pred chHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCC-------cchhhhhhHhHHHHHHHhhcc
Q 000797 956 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI-------PSIHIHQYATQVLSVILALLD 1028 (1280)
Q Consensus 956 ~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l-------~~~~v~~~~~~lL~all~~L~ 1028 (1280)
-|+.|+-.+.+|-..- +.+..++.+++.+...+.|+.+.||..|+..|..+ +..+...+.++++|-+-..+.
T Consensus 439 tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 3556666666665433 33566677777777778888888888888776644 223666677777777777777
Q ss_pred CCChH-HHHH-----------------HHHHHHHH--hccCC---------cccchhhhHHHHHHhccccccCChhhHHH
Q 000797 1029 DLDES-VQLT-----------------AVSCLLTI--LKSSS---------KDAVEPILLNLSVRLRNLQVSMNVKMRRN 1079 (1280)
Q Consensus 1029 d~d~~-V~~e-----------------a~~~L~~l--l~~l~---------~~~~~~~l~~l~~~lr~~fede~~~vR~a 1079 (1280)
|.+.. |+.. ....++.- ++... .+........+......|+.|+.+-||.+
T Consensus 518 d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~ 597 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRA 597 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 74322 1111 11111111 11111 22334445555555677888888999999
Q ss_pred HHHHHHHHhhc-cCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhh----hcccCCCCCC
Q 000797 1080 AFAAFGALSNF-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGI----FNSHCFNSDH 1153 (1280)
Q Consensus 1080 Ai~lfG~L~~~-~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l----~~~~~~~~~~ 1153 (1280)
=..-++.|+.| ++.+.-+.+.. =|+..|+|.|...|.|=.+++--++.+.|| .+.+. ++.. +.|++
T Consensus 598 Lle~i~~LC~FFGk~ksND~iLs-------hLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~-ltD~E 669 (1431)
T KOG1240|consen 598 LLESIIPLCVFFGKEKSNDVILS-------HLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQG-LTDGE 669 (1431)
T ss_pred HHHHHHHHHHHhhhcccccchHH-------HHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHh-ccCcc
Confidence 99999999884 44444444222 234468999999999999999999999999 56653 3332 45553
Q ss_pred CCChHHHHHHHHHHHHH-hC--cchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc
Q 000797 1154 RSDYETFVRDLTRQFVQ-HF--PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1154 ~l~~~~f~~~~~~~L~~-~~--~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
..--...+.-+ +.|.+ .+ +-.+-.++.....|+=-|..-||++|..||-.+.+.+.
T Consensus 670 E~Viv~aL~~l-s~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 670 EAVIVSALGSL-SILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hhhHHHHHHHH-HHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 22112222222 22332 22 22455678888999999999999999999988887655
No 44
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.27 E-value=0.87 Score=55.63 Aligned_cols=257 Identities=11% Similarity=0.104 Sum_probs=158.2
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcch-h---hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccc
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-H---IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1054 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~---v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~ 1054 (1280)
-.++......|+++.|.||.-|+.-.|.++.. + -.+....+=..+++.|++.+++|.=.-+.|+-.|....+...+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45778888999999999999999999988643 1 0111223344577888877777664445555555555555544
Q ss_pred hhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhch
Q 000797 1055 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1134 (1280)
Q Consensus 1055 ~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1134 (1280)
.|=.-.|..+|.|-+-+...+|-+..|.+.|.++..+. .+-+-+|= ++.-.-|+--|+--|.++|.++-.||+-++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p--eyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP--EYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc--ccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 44455666777888888889999999999999997433 23232222 2222334445666799999999999999999
Q ss_pred hhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHH----hCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcc
Q 000797 1135 FMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ----HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL 1208 (1280)
Q Consensus 1135 ~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~----~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~ 1208 (1280)
..|. .+..++++.-.++ -....|..+.- +.=+-. ..+-+.+.=+.-|..+++..--.-..++..+
T Consensus 760 aiGPqdvL~~LlnnLkvqe--------Rq~RvctsvaI~iVae~cgpf-sVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQE--------RQQRVCTSVAISIVAEYCGPF-SVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hcCHHHHHHHHHhcchHHH--------HHhhhhhhhhhhhhHhhcCch-hhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 9998 5555665532222 22233333321 111111 1223333445567666666554444555444
Q ss_pred CchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1209 CDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1209 ~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
...+-+ .+.-.+...|.. -+.|.||+-|..|+--+..+.
T Consensus 831 ig~~s~--dYvy~itPlleD-AltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 831 IGQASL--DYVYSITPLLED-ALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHH--HHHHHhhHHHHh-hhcccchHHHHHHHHHHHHHh
Confidence 332222 122234556777 588999999999987665543
No 45
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.26 E-value=0.99 Score=56.22 Aligned_cols=257 Identities=13% Similarity=0.130 Sum_probs=163.4
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hh---hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccc
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HI---HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1054 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v---~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~ 1054 (1280)
-+++.....+|+++++.||.-|+.-+|.++.. +. .+....+=..+++.|+....+|.=.-+.|+..|.+.++-...
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 45677888899999999999999999998753 11 112222334567888877777765566666666666655555
Q ss_pred hhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhch
Q 000797 1055 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1134 (1280)
Q Consensus 1055 ~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1134 (1280)
-+=.-.|..+|.|-+.+-..+|....|.+.|.++.. |..+-+-+|= ++.-.-|+--|+--+.++|.++-.||+-+|.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr--gpE~v~aREW-MRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR--GPEYVSAREW-MRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc--CcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 555667888889999998899999999999999973 3333333322 2222334445566688999999999999999
Q ss_pred hhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCc---chHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccC
Q 000797 1135 FMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP---SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLC 1209 (1280)
Q Consensus 1135 ~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~---~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~ 1209 (1280)
..|- .+..++++.-.++ -.+.+|..+.-.-- ..--..+-+.+.=+.-|..+++..--.-+.++..+.
T Consensus 955 aIGPqdVLatLlnnLkvqe--------Rq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQE--------RQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred hcCHHHHHHHHHhcchHHH--------HHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH
Confidence 9998 5556666532222 22233332221000 001112333444456677777765555555555432
Q ss_pred chhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1210 DDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1210 ~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
...- ..+.=-+...|+. -+-|.|++=|..|+.++..+
T Consensus 1027 gems--kdYiyav~PlleD-AlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1027 GEMS--KDYIYAVTPLLED-ALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHh--hhHHHHhhHHHHH-hhccccHHHHHHHHHHHHHH
Confidence 2111 1122335566777 58899999999998876654
No 46
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0022 Score=72.82 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=74.5
Q ss_pred cCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCC
Q 000797 1071 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1150 (1280)
Q Consensus 1071 de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~ 1150 (1280)
.+++++++.|.+.+.+|+.... ..+..+++- +.+..+..-+-|...+|+..--.++...| +.
T Consensus 345 ~dnEeiqchAvstLrnLAasse-~n~~~i~es--gAi~kl~eL~lD~pvsvqseisac~a~La---------------l~ 406 (550)
T KOG4224|consen 345 GDNEEIQCHAVSTLRNLAASSE-HNVSVIRES--GAIPKLIELLLDGPVSVQSEISACIAQLA---------------LN 406 (550)
T ss_pred CCchhhhhhHHHHHHHHhhhhh-hhhHHHhhc--CchHHHHHHHhcCChhHHHHHHHHHHHHH---------------hc
Confidence 3778899999999999987332 344445443 33344444566888888865444444433 11
Q ss_pred CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCch--hhhhhc--CHHHHHHHH
Q 000797 1151 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD--QHILSL--FYTQVFGLL 1226 (1280)
Q Consensus 1151 ~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~--~~~~~~--~~e~~~~~L 1226 (1280)
+..+ +.|+ ..+.+ .-.++++.|...++|.+||-.+|-+-...+. .-+... ..+-+.+.|
T Consensus 407 d~~k---~~ll----------d~gi~----~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L 469 (550)
T KOG4224|consen 407 DNDK---EALL----------DSGII----PILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL 469 (550)
T ss_pred cccH---HHHh----------hcCCc----ceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence 1100 0000 00111 1134466666667777766555555433221 111111 123345556
Q ss_pred HHHhccCCChhhHHHHHHHHHHHH
Q 000797 1227 VVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1227 ~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
.+ .+...+..+|..|..|+..|.
T Consensus 470 ~R-fl~S~~~tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 470 AR-FLASHELTFRHIARWTIQQLL 492 (550)
T ss_pred HH-HHhhhHHHHHHHHHHHHHHHH
Confidence 66 566666677776666665554
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.18 E-value=0.00064 Score=57.89 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1192 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1192 ~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
+.+|.+|++.+|.+....+.... .....++..|.. +++|+++.||..|+.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~--~~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ--PYLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH--HHHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH--HHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 46999999999997765553332 246789999999 89999999999999999865
No 48
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.13 E-value=0.0019 Score=62.02 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhc
Q 000797 1035 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1114 (1280)
Q Consensus 1035 ~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1114 (1280)
...++.+|..+--.++.. +..++..|...+...|+|++..||.+|.+.+..+++..++ ..-+++++++..|..++
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~--- 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLS--- 77 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---
Confidence 356777777777677655 8899999999999999999999999999999999986543 55668889888888865
Q ss_pred cCCCHHHHHHHH
Q 000797 1115 YDDDLSVRQACR 1126 (1280)
Q Consensus 1115 ~D~~~~V~~ack 1126 (1280)
.|++++|+.+|.
T Consensus 78 ~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 78 ADPDENVRSAAE 89 (97)
T ss_pred cCCchhHHHHHH
Confidence 799999999884
No 49
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.047 Score=69.31 Aligned_cols=294 Identities=15% Similarity=0.157 Sum_probs=161.5
Q ss_pred HHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcc
Q 000797 930 VSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1009 (1280)
Q Consensus 930 l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~ 1009 (1280)
.++.+|....--+..+.+-++++++.=|..|+-|++-+ ....+++.+++.+.+.+.|+++-||+-|.-+++++-.
T Consensus 82 yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 82 YAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 34556666666777777777788888888887777653 2345667777778888888888888888877777653
Q ss_pred hhhhhhHhH-HHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccc-cCChhhHHHHHHHHHHH
Q 000797 1010 IHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGAL 1087 (1280)
Q Consensus 1010 ~~v~~~~~~-lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fe-de~~~vR~aAi~lfG~L 1087 (1280)
-+-+.++.. +...+...+.|.|+.|+..|+.+|..+=+. ....++..++.++-.+-- ......+..=...++.+
T Consensus 157 ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L 232 (757)
T COG5096 157 LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVL 232 (757)
T ss_pred cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHH
Confidence 333333344 455555566677777888888877776543 344555555555544321 11111244445556666
Q ss_pred hhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccC--CCCCCCCChHHHHHHH
Q 000797 1088 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--FNSDHRSDYETFVRDL 1164 (1280)
Q Consensus 1088 ~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~--~~~~~~l~~~~f~~~~ 1164 (1280)
..+....... .+ ...-.+..|++-.|++|...+-..+.++.+++.. .......... +-+...---..++...
T Consensus 233 ~~~~~~~~~s---~~--~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~ 307 (757)
T COG5096 233 TERVPTTPDS---AE--DFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRN 307 (757)
T ss_pred HccCCCCCCc---HH--HHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHh
Confidence 5432211111 11 1112223467778999999999999999888766 4332211110 0000000002344455
Q ss_pred HHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcc---CchhhhhhcCHHHHHHHHHHHhccC--CChhhH
Q 000797 1165 TRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL---CDDQHILSLFYTQVFGLLVVKLSQS--ADAIVR 1239 (1280)
Q Consensus 1165 ~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~---~~~~~~~~~~~e~~~~~L~~~Ll~D--pdp~VR 1239 (1280)
-....+.++..++.-.....-.+++| +..+.-.+.+. -+++.. .++...++. .-.+ .++.+-
T Consensus 308 ~~~~l~~~~k~~~~~~~~f~~~~~~~-------i~~~lek~~~~t~l~~~~n~-----~~~L~e~~~-y~~~~~~~~e~v 374 (757)
T COG5096 308 IQIDLEVCSKLLDKVKKLFLIEYNDD-------IYIKLEKLDQLTRLADDQNL-----SQILLELIY-YIAENHIDAEMV 374 (757)
T ss_pred hHHHHHhhHHHHHHHhhhhhhhccch-------HHHHHHHHHHHhhcCCchhh-----HHHHHHHHH-HHhhccccHHHH
Confidence 55555656655555444333333333 33333333321 112222 223333444 2445 788888
Q ss_pred HHHHHHHHHHH
Q 000797 1240 ATCSSSLGWLL 1250 (1280)
Q Consensus 1240 ~~Aa~aL~~l~ 1250 (1280)
..|-++||.+.
T Consensus 375 ~~~ik~lgd~~ 385 (757)
T COG5096 375 SEAIKALGDLA 385 (757)
T ss_pred HHHHHHHHhhh
Confidence 88888888776
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.043 Score=65.86 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=171.2
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc--hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch----
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1010 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---- 1010 (1280)
.++|++.++-..+++++-.+|-+|+.+|+..+.+|.. ......+.++.+.+--.|++.-|+.-..-.+|.++++
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999998855 2344577888888888999999999888889999876
Q ss_pred -hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCccc------chhhhHHHHHHhccc--cccCChhhHHHHH
Q 000797 1011 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA------VEPILLNLSVRLRNL--QVSMNVKMRRNAF 1081 (1280)
Q Consensus 1011 -~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~------~~~~l~~l~~~lr~~--fede~~~vR~aAi 1081 (1280)
.-..|.+....+++-||.| .+.+........-++.+++.+.+ +.++.+.|..-|-.- .-+.....|.++|
T Consensus 443 i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~f 521 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLF 521 (858)
T ss_pred cCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 2234556678888888877 34555555555555555554332 345555554444211 1245578999999
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHH-----------------------HHHHHHHHhhchhhhh
Q 000797 1082 AAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR-----------------------QACRNTLKQVAPFMEI 1138 (1280)
Q Consensus 1082 ~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~-----------------------~ack~tL~~~a~~L~w 1138 (1280)
+++|.+.-++...- -+ +..++-.+...=-|++.+|- .+--.+.++-..-..-
T Consensus 522 saLgtli~~~~d~V-~~----~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D 596 (858)
T COG5215 522 SALGTLILICPDAV-SD----ILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED 596 (858)
T ss_pred HHHHHHHhhcchhH-HH----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH
Confidence 99999998764321 11 11111111111112222221 1111111110000000
Q ss_pred hHHhhhcccCCCC-CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhh----cCCChhHHHHHHHHHHHhhccCchhh
Q 000797 1139 GVYGIFNSHCFNS-DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF----EAPWPIIQANAIYFSSSILCLCDDQH 1213 (1280)
Q Consensus 1139 ~l~~l~~~~~~~~-~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~yl----kS~~~~IR~aA~~fiG~l~~~~~~~~ 1213 (1280)
.+-.+|-+. ++. +...-+++.+..|. .|+.+..++...|+..-++|+ +.....+-..|+-|+|-+.+.+..+.
T Consensus 597 ~lm~Lf~r~-les~~~t~~~~dV~~aIs-al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 597 QLMELFIRI-LESTKPTTAFGDVYTAIS-ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHH-HhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH
Confidence 122333221 121 12344566665543 344444445555555555544 45567788899999999999888766
Q ss_pred hhhcCHHHHHHHHHHHhcc
Q 000797 1214 ILSLFYTQVFGLLVVKLSQ 1232 (1280)
Q Consensus 1214 ~~~~~~e~~~~~L~~~Ll~ 1232 (1280)
. +..+.+.+.|.. .++
T Consensus 675 ~--~y~d~~ms~LvQ-~ls 690 (858)
T COG5215 675 N--IYADVLMSSLVQ-CLS 690 (858)
T ss_pred H--HHHHHHHHHHHH-Hhc
Confidence 5 344555666665 444
No 51
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0063 Score=72.86 Aligned_cols=262 Identities=17% Similarity=0.159 Sum_probs=175.9
Q ss_pred hhccccccchHHHHHHHHHhhhCCC--chhhHHHHHHHHHHh-hhCCCChhHHHHHHhhccCCcc--h-hhhhhHhHHHH
Q 000797 948 SINRQQRFQREAAAAALSEFVRYSG--GFDSLLEQMVEALCR-HVSDESPTVRGLCLRGLVQIPS--I-HIHQYATQVLS 1021 (1280)
Q Consensus 948 ~L~s~~~~~R~~a~aflsEll~~~~--~~~~l~~~~i~~L~~-~l~D~~~~VR~laLrGLg~l~~--~-~v~~~~~~lL~ 1021 (1280)
.+...-...|.+|+.-+=.++.... +.-..++.++..|+. -...++...|+-+|-|++-.+. + +...|.+.+++
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~ 87 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVP 87 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhH
Confidence 3333334456666665555555322 233556777775555 4466788889988988886543 2 44559999999
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh-ccCCcchHHHH
Q 000797 1022 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQREAFL 1100 (1280)
Q Consensus 1022 all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~-~~~~~~~~~~~ 1100 (1280)
.++.++.|.|..|+..|+..|-+|..... ..+-.++..|--.+..++.|.+..||.+|=-+- .+.+ .+.....
T Consensus 88 Pv~~cf~D~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLd-RLikdIVte~~~---- 161 (675)
T KOG0212|consen 88 PVLNCFSDQDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGGAELLD-RLIKDIVTESAS---- 161 (675)
T ss_pred HHHHhccCccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccHHHHHH-HHHHHhcccccc----
Confidence 99999999999999888888888876654 345578888888999999999999998875333 3332 1111110
Q ss_pred HHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHH
Q 000797 1101 EQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSY 1179 (1280)
Q Consensus 1101 eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~ 1179 (1280)
.--+..++||+- |+.+-+|..|+.- ++| +..+.... + + +++.|+ ..+
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~fl----------v~W-l~~Lds~P----~-------~--~m~~yl--------~~~ 209 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFL----------VSW-LYVLDSVP----D-------L--EMISYL--------PSL 209 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHH----------HHH-HHHHhcCC----c-------H--HHHhcc--------hHH
Confidence 112467899888 9999999998853 455 11111221 1 1 233433 345
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1180 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1180 l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
+...+.|+.++.++||.-+-..+|.+++....+-. ..+.+++.+.++. =++.|+|.++..| |-.+.+|
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~-s~d~~~~i~vlv~-~l~ss~~~iq~~a---l~Wi~ef 277 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS-SMDYDDMINVLVP-HLQSSEPEIQLKA---LTWIQEF 277 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc-ccCcccchhhccc-cccCCcHHHHHHH---HHHHHHH
Confidence 66678899999999999999989988875442221 1256777777777 5788999999888 4444443
No 52
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.81 E-value=0.017 Score=73.86 Aligned_cols=246 Identities=17% Similarity=0.189 Sum_probs=165.7
Q ss_pred chHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCCChHH
Q 000797 956 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1034 (1280)
Q Consensus 956 ~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~d~~V 1034 (1280)
-|..|-..|.....+..+ ..+-..+.+...+.-+|.+|.||..+-+-+|+++.. .-..-...+++-..+...|..+.|
T Consensus 214 sr~sacglf~~~~~~~~~-~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsV 292 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD-DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSV 292 (759)
T ss_pred cchhhhhhhHHhccCCCh-HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhH
Confidence 466777888887665543 223334556666667999999999999999999865 223344666777777777777889
Q ss_pred HHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhc
Q 000797 1035 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1114 (1280)
Q Consensus 1035 ~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1114 (1280)
+..|+.++..+++.++..+ ..-..+...++.+.+|.+..+|......|-++....+...-.+ ....|+..-+
T Consensus 293 r~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~------~~~~~~~~l~ 364 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT------QLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc------cchhhHHHHh
Confidence 9999999999999988773 4445667778889999999999999999988876221111111 2445666678
Q ss_pred cCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh
Q 000797 1115 YDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1193 (1280)
Q Consensus 1115 ~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1193 (1280)
+|+..+++.+...-....+.+++- ....+.. .. .+-....+.-++..+
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~--------------------~~-----------ilp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNASCYPNIPD--------------------SS-----------ILPEVQVLVLDNALH 413 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCcccccccch--------------------hh-----------hhHHHHHHHhcccch
Confidence 899888887654333332222211 1111111 10 022234466778899
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 000797 1194 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1246 (1280)
Q Consensus 1194 IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL 1246 (1280)
+|.+.+.++..+.-.++.+. ..+.+...+.. +++|.+|.||-.-...+
T Consensus 414 vr~a~a~~~~~~~p~~~k~~----ti~~llp~~~~-~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPKER----TISELLPLLIG-NLKDEDPIVRLNLIDKL 461 (759)
T ss_pred HHHHHhccccccCccCCcCc----CccccChhhhh-hcchhhHHHHHhhHHHH
Confidence 99999998877765555222 24555667777 79999999998766544
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.81 E-value=0.002 Score=61.78 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=73.7
Q ss_pred HHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccC
Q 000797 996 VRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1072 (1280)
Q Consensus 996 VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede 1072 (1280)
.|+-+|-||+.++.. .+.+|.+.+++.++.++.|.|..|+..|+.+|-+|......+. -+++.+|-..+..++.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 377788888877643 7899999999999999999999999999999999998776544 458889999999999999
Q ss_pred ChhhHHHHHH
Q 000797 1073 NVKMRRNAFA 1082 (1280)
Q Consensus 1073 ~~~vR~aAi~ 1082 (1280)
++.||.+|-.
T Consensus 81 d~~Vr~~a~~ 90 (97)
T PF12755_consen 81 DENVRSAAEL 90 (97)
T ss_pred chhHHHHHHH
Confidence 9999999943
No 54
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.79 E-value=0.0025 Score=54.24 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=45.9
Q ss_pred hhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 000797 994 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1045 (1280)
Q Consensus 994 ~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~l 1045 (1280)
|.||..|+.+||+++.. ....+.+.+++.++..|.|.++.|+..|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999998743 77889999999999999998899999999999865
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.014 Score=66.09 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=148.3
Q ss_pred HHHHHHHHHhhhCCCc-hhhHHHH-HHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhh------------------
Q 000797 958 EAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQY------------------ 1015 (1280)
Q Consensus 958 ~~a~aflsEll~~~~~-~~~l~~~-~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~------------------ 1015 (1280)
.-|+=+++..-.+... ...+.+. .++.+.+.|.+++..||.-++=+|||+|-+ ..+.|
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~ 212 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence 4555556665444322 2223333 688999999999999999999999999732 11111
Q ss_pred ----------------------------HhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcc
Q 000797 1016 ----------------------------ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1067 (1280)
Q Consensus 1016 ----------------------------~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~ 1067 (1280)
..+.+|.+-+.++..|++|+..|+.+++=+.+.-.+..-.-+=..+..||..
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvE 292 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE 292 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Confidence 1344555555555556666666666666665543222111122345667888
Q ss_pred ccccCChhhHHHHHHHHHHHhhccCCcchHHHHHH------HHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHH
Q 000797 1068 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ------IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVY 1141 (1280)
Q Consensus 1068 ~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eq------v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~ 1141 (1280)
++.+++..|..-|++..|.+.. |.+. ..| ++..+.|||-| +-..+|+.+..|+..+..==--..+
T Consensus 293 lLs~~sa~iqtPalR~vGNIVT---G~D~---QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiq 363 (526)
T COG5064 293 LLSHESAKIQTPALRSVGNIVT---GSDD---QTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQ 363 (526)
T ss_pred HhcCccccccCHHHHhhcCeee---cCcc---ceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHH
Confidence 8999999999999999999875 3321 123 34556666444 4448999888887765431000222
Q ss_pred hhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcc--CchhhhhhcCH
Q 000797 1142 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL--CDDQHILSLFY 1219 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~--~~~~~~~~~~~ 1219 (1280)
++..-+. +--.+..+.+..-.||..|+|.|.-...+ -.++.+..+=.
T Consensus 364 avid~nl-------------------------------iPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~ 412 (526)
T COG5064 364 AVIDANL-------------------------------IPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVS 412 (526)
T ss_pred HHHhccc-------------------------------chHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHH
Confidence 2222210 01112233333445888888888655432 11344444433
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHh
Q 000797 1220 TQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1220 e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1253 (1280)
.-.++.|-. |+.=.|-.|-..|-.++.++.|.-
T Consensus 413 qG~IkpLc~-~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 413 QGFIKPLCD-LLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred ccchhHHHH-HHhccCccchhhhHHHHHHHHhhh
Confidence 446677777 666555556666677777766543
No 56
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.76 E-value=0.13 Score=60.06 Aligned_cols=234 Identities=15% Similarity=0.131 Sum_probs=140.3
Q ss_pred HHHHHhhhCCCChhHHHHHHhhccCCcch-----hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC-cccch
Q 000797 982 VEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVE 1055 (1280)
Q Consensus 982 i~~L~~~l~D~~~~VR~laLrGLg~l~~~-----~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~-~~~~~ 1055 (1280)
+.-.+..+.|-+...|..+|+++-++..+ .+.....+++++++.++.....+-..-|..++.-+.=.++ .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33445566788899999999999977532 6677789999999999987665555556666666655544 34455
Q ss_pred hhhHHHHHHhccccccC--ChhhHHHHHHHHHHHhhccCCcchHHHHH--HHHHhHHHHHHhccCCCHHHHHHHHHHHHh
Q 000797 1056 PILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLE--QIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1056 ~~l~~l~~~lr~~fede--~~~vR~aAi~lfG~L~~~~~~~~~~~~~e--qv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1131 (1280)
.++-.+...|++...|. ...+|.+++.++|-+.-++ +.+.+...+ +.+..+-....+=.|.+..+..+.-.+--.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~-~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVG-GSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 66667777777776664 4578899999999987443 334333332 444444343333334332122111122223
Q ss_pred hchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc
Q 000797 1132 VAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1132 ~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
+|.+-+| .+-..... .++. +. +...+......++|+...||-+|.-.|..+.-...
T Consensus 204 ~aAL~aW~lLlt~~~~-----------~~~~-~~-----------~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWALLLTTLPD-----------SKLE-DL-----------LEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHhcCCH-----------HHHH-HH-----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444555 44332221 0111 11 11223334458899999999999999998875333
Q ss_pred h--hhhhhcCHHHHHHHHHHHhccCCChhhHH
Q 000797 1211 D--QHILSLFYTQVFGLLVVKLSQSADAIVRA 1240 (1280)
Q Consensus 1211 ~--~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~ 1240 (1280)
+ +.....+.+.+++.+.. |-.|..-.+-+
T Consensus 261 ~~~~~~~~~~~~~l~~~l~~-La~dS~K~~sK 291 (309)
T PF05004_consen 261 DHEEDFLYEDMEELLEQLRE-LATDSSKSRSK 291 (309)
T ss_pred cccccccccCHHHHHHHHHH-HHHhccCccch
Confidence 2 12233467888888888 77776444433
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.70 E-value=0.003 Score=61.73 Aligned_cols=106 Identities=24% Similarity=0.234 Sum_probs=80.8
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhH-hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchh
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1056 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~-~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~ 1056 (1280)
+++.|.+-++|+++.+|.-++.+|++++.+ ...... ..+++.+++.|.+.++.++..|+.+|+++...-.. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HHH
Confidence 567777888999999999999999999864 222222 37899999999998999999999999999875321 111
Q ss_pred hhH--HHHHHhccccccCChhhHHHHHHHHHHHh
Q 000797 1057 ILL--NLSVRLRNLQVSMNVKMRRNAFAAFGALS 1088 (1280)
Q Consensus 1057 ~l~--~l~~~lr~~fede~~~vR~aAi~lfG~L~ 1088 (1280)
.+. .+...+..++++.+..+|..|..+++.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111 24555666778889999999999999875
No 58
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.64 E-value=0.14 Score=65.53 Aligned_cols=305 Identities=14% Similarity=0.173 Sum_probs=161.6
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHH-HHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhh
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQ 1014 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~ 1014 (1280)
..+.++..|++.|++.+..-.+.++.|+-.|--......... ..+++.|.+-+..++..++..++|-|.|++.+ +++.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 456778888889999888888888888888754433322222 33788899999999999999999999999976 3332
Q ss_pred --hHhHHHHHHHhhccCCChHHHHHHHHHHHHHhcc------CCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHH
Q 000797 1015 --YATQVLSVILALLDDLDESVQLTAVSCLLTILKS------SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGA 1086 (1280)
Q Consensus 1015 --~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~------l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~ 1086 (1280)
-...++|.+...|.+.+. ..-++..|..+-.. ...++.-+. ++ .-+++..+..+...++.+.-.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f~~TdcIp~---L~---~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMFAYTDCIPQ---LM---QMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred HHHHCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHHhhcchHHH---HH---HHHHhCCCccccHHHHHHHHH
Confidence 223467888888876542 22233333333221 001111111 11 113344445555555555555
Q ss_pred Hhhc-------cCCcchHHHHHHHHHh--------------------------HHHHHHhccC-CCHHHHHHHHHHHHhh
Q 000797 1087 LSNF-------GVGSQREAFLEQIHAM--------------------------LPRLILHIYD-DDLSVRQACRNTLKQV 1132 (1280)
Q Consensus 1087 L~~~-------~~~~~~~~~~eqv~~~--------------------------LvpLLlHL~D-~~~~V~~ack~tL~~~ 1132 (1280)
++.. +.|..-..+.+...+. +.||+-.+.. ++.+..-.|--+|+..
T Consensus 439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 439 LALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 4431 2222222333332222 2222222222 3555666666666666
Q ss_pred c-hhhhh-hHHh------hhcccCCCCCCCCChHHHHHHHHHHHHH--hCcchHHH-----HHHHHHhhhcCCC--hhHH
Q 000797 1133 A-PFMEI-GVYG------IFNSHCFNSDHRSDYETFVRDLTRQFVQ--HFPSRIDS-----YMGSTIQAFEAPW--PIIQ 1195 (1280)
Q Consensus 1133 a-~~L~w-~l~~------l~~~~~~~~~~~l~~~~f~~~~~~~L~~--~~~~~~~~-----~l~~~l~ylkS~~--~~IR 1195 (1280)
+ +-++| .+-. ...+. +..+ ..-++.+-+++..+.. ..++-+.. ++.+.+..|++-+ .++=
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~-L~~g--~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDL-LKPG--ASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHH-hCCC--CCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 5 23455 2221 11111 2222 1113344444333321 11111111 2334444555544 2233
Q ss_pred HHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1196 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1196 ~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
-.-+...+.++.|=.... .-+...++...|+. |.+|..+.||+.|..+|..+..+..
T Consensus 596 lQil~~f~~ll~h~~tr~-~ll~~~~~~~ylid-L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 596 LQILYVFYQLLFHEETRE-VLLKETEIPAYLID-LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHHHHcChHHHH-HHHhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 334444455555422111 11233557788999 8999999999999999999986654
No 59
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.62 E-value=0.17 Score=58.80 Aligned_cols=142 Identities=25% Similarity=0.272 Sum_probs=91.6
Q ss_pred HHHHHHHHHH-hhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccch
Q 000797 977 LLEQMVEALC-RHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1055 (1280)
Q Consensus 977 l~~~~i~~L~-~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~ 1055 (1280)
.++.+++.|. -+++.+++.||..|++.||=.+.-+. +...+-++-++..+...++.|...|+.++-+++-.=+.+.+.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3445554444 68899999999999998885442110 123344555666665457889999999999997543333322
Q ss_pred hh--------hHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh-ccCCCHHHHH
Q 000797 1056 PI--------LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQ 1123 (1280)
Q Consensus 1056 ~~--------l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ 1123 (1280)
.. ...+..-+..+++++++++|+.|+..|..|.-.+.-. . ...++..|+-+.++ -..++..+|+
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~--~--~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS--D--PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC--c--HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 22 3466667788999999999999999999997533221 2 34566666555554 2233444443
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.38 Score=59.76 Aligned_cols=197 Identities=15% Similarity=0.212 Sum_probs=123.1
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHH-HHHHHhhhCCCchhhHHHHHHHHHHhhhCCCC
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDES 993 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~-aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~ 993 (1280)
+..-|..||. |.+--+.-.|...+.+..-+..+|+++-..-|.-|+ +.|--|++.|.. ++...+.|.+.|.||+
T Consensus 120 S~n~ye~giA-L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 120 SSNVYEVGLA-LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDPD 194 (877)
T ss_pred cCccchhhhe-ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCCC
Confidence 5556666765 332222335667888888888899988877776666 455567787743 4667889999999999
Q ss_pred hhHHHHHHhhccCCcch--------------------------hh-----------hhhHhHHHHHHHhhccCCCh-HHH
Q 000797 994 PTVRGLCLRGLVQIPSI--------------------------HI-----------HQYATQVLSVILALLDDLDE-SVQ 1035 (1280)
Q Consensus 994 ~~VR~laLrGLg~l~~~--------------------------~v-----------~~~~~~lL~all~~L~d~d~-~V~ 1035 (1280)
|.|..+|.--+-.+|.. |+ .++.+.+++.+.+.+..+.. .++
T Consensus 195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLl 274 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLL 274 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHH
Confidence 99999998865554421 11 22345566666666654331 234
Q ss_pred HHHHHHHH--HHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh
Q 000797 1036 LTAVSCLL--TILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1113 (1280)
Q Consensus 1036 ~ea~~~L~--~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH 1113 (1280)
.|.+++.- +++..+.+ +.+++.+ =+.+||-|++|.++.+|..+.-++|.+++. .-+.....++-|+++
T Consensus 275 YECvNTVVa~s~s~g~~d-~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa~kdlIlrc------- 344 (877)
T KOG1059|consen 275 YECVNTVVAVSMSSGMSD-HSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQAHKDLILRC------- 344 (877)
T ss_pred HHHHHHheeehhccCCCC-cHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHHhHHHHHHH-------
Confidence 44444332 22333322 2233222 246899999999999999999999999972 222333333333333
Q ss_pred ccCCCHHHHHHHH
Q 000797 1114 IYDDDLSVRQACR 1126 (1280)
Q Consensus 1114 L~D~~~~V~~ack 1126 (1280)
|.|.|+++|-.+-
T Consensus 345 L~DkD~SIRlrAL 357 (877)
T KOG1059|consen 345 LDDKDESIRLRAL 357 (877)
T ss_pred hccCCchhHHHHH
Confidence 4566777774433
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.27 Score=61.82 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=94.3
Q ss_pred hhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHh
Q 000797 946 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILA 1025 (1280)
Q Consensus 946 ~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~ 1025 (1280)
+++..|++=..+.++-...+=||...-+ ++-=+.|.|.+-|+.+|..|-.+||-.||+++..++ .+.+.|-+-+
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qd---vllLltNslknDL~s~nq~vVglAL~alg~i~s~Em---ardlapeVe~ 149 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQD---LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM---ARDLAPEVER 149 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchH---HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH---hHHhhHHHHH
Confidence 4667777766666555555555543322 222257899999999999999999999999998654 3455666666
Q ss_pred hccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1026 LLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1026 ~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
.+...++-|+..|+.++-+++..... -++ .....-+.++-+.+..|=.++..++-++++
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~P~-l~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKVPD-LVE----HFVIAFRKLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCch-HHH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence 67777899999999999999876432 222 333445666666777777777777777776
No 62
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.093 Score=67.60 Aligned_cols=261 Identities=17% Similarity=0.187 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCC-hHHHHHHHHHHHHHhccCCcccc
Q 000797 976 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAV 1054 (1280)
Q Consensus 976 ~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d-~~V~~ea~~~L~~ll~~l~~~~~ 1054 (1280)
.-+|.++..|..+++|.+..||+-|.+|+|.++.+--..+..+++..+++.+-..+ +..-..||.+|..+-.. .-..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r--GlLl 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR--GLLL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc--CCcc
Confidence 34577899999999999999999999999999877335678899999999666555 45668999999988642 0111
Q ss_pred hhhhHHHHHHh-c-ccccc------CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHH
Q 000797 1055 EPILLNLSVRL-R-NLQVS------MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1126 (1280)
Q Consensus 1055 ~~~l~~l~~~l-r-~~fed------e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack 1126 (1280)
.+.+..+..-| . =.||+ ....||-||-.+.=++++.-.....+||.+++...|+-- -+-|.+..+|.|+.
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~--AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV--ALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH--HhcCchhhHhHHHH
Confidence 11111111111 1 12333 347899999988877776323334455544444433322 36799999999998
Q ss_pred HHHHhhc----hh-hhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC-hhHHHHHHH
Q 000797 1127 NTLKQVA----PF-MEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQANAIY 1200 (1280)
Q Consensus 1127 ~tL~~~a----~~-L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~-~~IR~aA~~ 1200 (1280)
.||...- ++ -|..+....+=..... + ..-+.++|..+. +|++....++...+.-==+-| +.||.-||+
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~-r----sNcy~~l~~~ia-~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTN-R----SNCYLDLCVSIA-EFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhh-h----hhHHHHHhHHHH-hhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 8876532 22 1112211111111100 0 112345566544 467777666666444323556 458999998
Q ss_pred HHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1201 FSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1201 fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
-+-.+...- ++... +.++.-+.. ..--+|+.-|..+.-|.|.+--.
T Consensus 567 aL~~Ls~~~-pk~~a----~~~L~~lld-~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 567 ALHKLSLTE-PKYLA----DYVLPPLLD-STLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HHHHHHHhh-HHhhc----ccchhhhhh-hhcCCChHHhhhhHHHHHHHHHH
Confidence 887754432 33332 223333444 34457888888777776665433
No 63
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.50 E-value=0.048 Score=67.60 Aligned_cols=280 Identities=15% Similarity=0.182 Sum_probs=173.1
Q ss_pred ChHHHHHHHHH--HHHHhhcchHHHHHHHhcCCCC--chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccch
Q 000797 882 EPLRAILTSFQ--AFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR 957 (1280)
Q Consensus 882 ~P~~~~l~Alk--~ll~~~~~~~~~~~l~~~~~w~--~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R 957 (1280)
++++...++.. .++ +.+.-++...|+.-.--+ +...+..|...-.+.+.+.-+ ...++-.+.-.+...+
T Consensus 234 n~~~~~~~~~~~~gff-~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~---- 306 (690)
T KOG1243|consen 234 NKLRFILECRLLGGFF-RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD---- 306 (690)
T ss_pred chhhHHHHHHhccccc-cchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc----
Confidence 36666555543 232 333344445555432222 667777777665554444322 2333333333333333
Q ss_pred HHHHHHHHHhhhCCC--chhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCCChHH
Q 000797 958 EAAAAALSEFVRYSG--GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1034 (1280)
Q Consensus 958 ~~a~aflsEll~~~~--~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~d~~V 1034 (1280)
+|-.|++=++..-. +.+.....+++.|.+.++-++..||..-|+++-+...+ .-..+..+++|-+..|+-|.+..+
T Consensus 307 -a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~L 385 (690)
T KOG1243|consen 307 -AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATL 385 (690)
T ss_pred -cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHH
Confidence 44455555544211 12223355889999999999999999999999877665 334456789999999999999999
Q ss_pred HHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhc
Q 000797 1035 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1114 (1280)
Q Consensus 1035 ~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1114 (1280)
+..++..+..+...++...++.=+.+..-++++
T Consensus 386 re~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~----------------------------------------------- 418 (690)
T KOG1243|consen 386 REQTLKSMAVLAPKLSKRNLNGELLRYLARLQP----------------------------------------------- 418 (690)
T ss_pred HHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc-----------------------------------------------
Confidence 999998888888887776554433333333333
Q ss_pred cCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh
Q 000797 1115 YDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1193 (1280)
Q Consensus 1115 ~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1193 (1280)
|++..+|...-..|+.+|+++.. ..+-++ .+ -| ..-++||.++
T Consensus 419 -d~~~~irtntticlgki~~~l~~~~R~~vL-----------~~-af-----------------------tralkdpf~p 462 (690)
T KOG1243|consen 419 -DEHGGIRTNTTICLGKIAPHLAASVRKRVL-----------AS-AF-----------------------TRALKDPFVP 462 (690)
T ss_pred -cccCcccccceeeecccccccchhhhcccc-----------ch-hh-----------------------hhhhcCCCCC
Confidence 44555555555555555554433 211111 00 01 1246889999
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhhhcc
Q 000797 1194 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1257 (1280)
Q Consensus 1194 IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1257 (1280)
=|.++++-.-...++++.+... ..+...+.. +.-||++.||..|-.++..+......++
T Consensus 463 aR~a~v~~l~at~~~~~~~~va----~kIlp~l~p-l~vd~e~~vr~~a~~~i~~fl~kl~~~~ 521 (690)
T KOG1243|consen 463 ARKAGVLALAATQEYFDQSEVA----NKILPSLVP-LTVDPEKTVRDTAEKAIRQFLEKLEKVS 521 (690)
T ss_pred chhhhhHHHhhcccccchhhhh----hhccccccc-cccCcccchhhHHHHHHHHHHhhhhhhc
Confidence 9999888666666666665552 556667777 8899999999999999888776555554
No 64
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.27 Score=59.51 Aligned_cols=276 Identities=16% Similarity=0.213 Sum_probs=176.9
Q ss_pred hhHHHHHH-HHhhhhccccccchHHHH---HHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-
Q 000797 936 KEVQTICL-ILTKSINRQQRFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1010 (1280)
Q Consensus 936 ~~~~~il~-~l~~~L~s~~~~~R~~a~---aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~- 1010 (1280)
.+++++.+ ....+..|++..+|..+. |+.+--+. ..+. ...+.+++-....++|++..||-.|...|-|++..
T Consensus 38 ~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg-~~~~-~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~ 115 (675)
T KOG0212|consen 38 DQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALG-IKDA-GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA 115 (675)
T ss_pred HHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhc-cccH-HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh
Confidence 46777777 666788888888885443 33333232 2222 26688888889999999999999999999999753
Q ss_pred --hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhh-hHHHHHHhccccccCChhhHHHHHHHHHHH
Q 000797 1011 --HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1087 (1280)
Q Consensus 1011 --~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~-l~~l~~~lr~~fede~~~vR~aAi~lfG~L 1087 (1280)
.+-.|.+.+-.++-+..-|.|. -+..+..-|.+++...-.+..+.| +..+..-|+--+-.-++..|..-++-+-.+
T Consensus 116 k~~v~~~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L 194 (675)
T KOG0212|consen 116 KGEVLVYFNEIFDVLCKLSADSDQ-NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL 194 (675)
T ss_pred ccCcccchHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 5666777777777666666543 445666777777654433333223 333344445455556899999888888777
Q ss_pred hhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHH
Q 000797 1088 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQ 1167 (1280)
Q Consensus 1088 ~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~ 1167 (1280)
-. ..+ ..|...+-..+.-|+--|.|++++||..|-.+++.. ++++-.+.. +++|++.
T Consensus 195 ds-~P~---~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f-------L~eI~s~P~-----s~d~~~~------- 251 (675)
T KOG0212|consen 195 DS-VPD---LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF-------LAEIRSSPS-----SMDYDDM------- 251 (675)
T ss_pred hc-CCc---HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH-------HHHHhcCcc-----ccCcccc-------
Confidence 64 222 223344444555556678999999999987776652 223222221 1233222
Q ss_pred HHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChh-hHHHHHHHH
Q 000797 1168 FVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAI-VRATCSSSL 1246 (1280)
Q Consensus 1168 L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~-VR~~Aa~aL 1246 (1280)
++ -.+.-+.||.+.|+.-|...|--+++..+++-+. ....+..++.. ...|.+++ ++..|...-
T Consensus 252 --------i~----vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~--~~s~il~~iLp-c~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 252 --------IN----VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL--YLSGILTAILP-CLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred --------hh----hccccccCCcHHHHHHHHHHHHHHhcCCCcchhh--hhhhhhhhccc-CCCCCccccHHHHHHHHH
Confidence 22 2345688999999999999998888877766653 33445566666 56666664 666666655
Q ss_pred HHHHHH
Q 000797 1247 GWLLKS 1252 (1280)
Q Consensus 1247 ~~l~k~ 1252 (1280)
+.+.+.
T Consensus 317 ~~l~~l 322 (675)
T KOG0212|consen 317 GLLLKL 322 (675)
T ss_pred HHHHHH
Confidence 555543
No 65
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.42 E-value=0.23 Score=60.36 Aligned_cols=292 Identities=16% Similarity=0.196 Sum_probs=192.5
Q ss_pred ChhHHHHHHHHhhhhccccccchHHHH---HHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-
Q 000797 935 PKEVQTICLILTKSINRQQRFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1010 (1280)
Q Consensus 935 ~~~~~~il~~l~~~L~s~~~~~R~~a~---aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~- 1010 (1280)
-|+..+|++.....|+++...-|+-|+ +.++-.+..|... ..+.++-++|.+.+....|.|-...|.++-.+.+.
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 468999999999999998877777665 4555566666443 44567788999999999999999988888877542
Q ss_pred ---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHH
Q 000797 1011 ---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1087 (1280)
Q Consensus 1011 ---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L 1087 (1280)
++..-...+||.+...|......|+...+.-++.|...-....-..--..||.-|-..+..-+-++|.+|..-||-+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 34445567899999999988889999999999999877655443445567888888888889999999999999999
Q ss_pred hhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChHHHHHHHH
Q 000797 1088 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLT 1165 (1280)
Q Consensus 1088 ~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~ 1165 (1280)
++ +.|.. ..|.-|+-.|+-++-.-|.-+.-+++.+|..-|. .+..+..... ..+-....+ .++.+|
T Consensus 758 s~-aiGPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~-TPe~nVQnG-vLkam~ 825 (975)
T COG5181 758 SR-AIGPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYE-TPEANVQNG-VLKAMC 825 (975)
T ss_pred Hh-hcCHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhccc-CchhHHHHh-HHHHHH
Confidence 97 33432 3566677677766666666666667666655554 4444444320 011011111 333333
Q ss_pred HHHHHhCcchHHHHHHH---HH-hhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhcc----CCChh
Q 000797 1166 RQFVQHFPSRIDSYMGS---TI-QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ----SADAI 1237 (1280)
Q Consensus 1166 ~~L~~~~~~~~~~~l~~---~l-~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~----Dpdp~ 1237 (1280)
-.+ +.-.+..-.|+-. .+ ..+-+..+.-|+.|+-.|-.+.-+-+ -.+.|++.=.|.. |+- ||.|.
T Consensus 826 fmF-eyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-----gtg~eda~IHLlN-llwpNIle~sPh 898 (975)
T COG5181 826 FMF-EYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-----GTGDEDAAIHLLN-LLWPNILEPSPH 898 (975)
T ss_pred HHH-HHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHH-HhhhhccCCCcH
Confidence 222 1111122222222 22 25667788889999999887775422 2234544444555 342 88888
Q ss_pred hHHHHHHHH
Q 000797 1238 VRATCSSSL 1246 (1280)
Q Consensus 1238 VR~~Aa~aL 1246 (1280)
|...--+.+
T Consensus 899 vi~~~~Eg~ 907 (975)
T COG5181 899 VIQSFDEGM 907 (975)
T ss_pred HHHHHHHHH
Confidence 887655543
No 66
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.11 Score=57.79 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=83.8
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHH
Q 000797 1020 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1099 (1280)
Q Consensus 1020 L~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~ 1099 (1280)
+.++.+.+.|....--.+....|+. +...+.-+++.++ ..-++..+-||-.|..+||++.. ..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ----~~~~~Av~~l~~v-----l~desq~pmvRhEAaealga~~~----~~---- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ----MQDEDAVPVLVEV-----LLDESQEPMVRHEAAEALGAIGD----PE---- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh----hccchhhHHHHHH-----hcccccchHHHHHHHHHHHhhcc----hh----
Confidence 5666666665422222344444443 3333444444443 33455668999999999999873 11
Q ss_pred HHHHHHhHHHHHHh-ccCCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCC-CCCCC-hHHHHHHHHHHHHHhCcc
Q 000797 1100 LEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNS-DHRSD-YETFVRDLTRQFVQHFPS 1174 (1280)
Q Consensus 1100 ~eqv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~-~~~l~-~~~f~~~~~~~L~~~~~~ 1174 (1280)
.++.+-. .+|++..|+..|-.|+.++ +| ......+...+.+ +.... ...-+.++-..|......
T Consensus 101 -------~~~~l~k~~~dp~~~v~ETc~lAi~rl----e~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~ 169 (289)
T KOG0567|consen 101 -------SLEILTKYIKDPCKEVRETCELAIKRL----EWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKP 169 (289)
T ss_pred -------hHHHHHHHhcCCccccchHHHHHHHHH----HHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchh
Confidence 2222321 3799999999999999984 55 2222111111111 11111 111133444445544444
Q ss_pred hHHHHHHHHHhh----------------hcCCChhHHHHHHHHHHHhhc
Q 000797 1175 RIDSYMGSTIQA----------------FEAPWPIIQANAIYFSSSILC 1207 (1280)
Q Consensus 1175 ~~~~~l~~~l~y----------------lkS~~~~IR~aA~~fiG~l~~ 1207 (1280)
.+..| +++.| ++.+..-+|-.++...|++-.
T Consensus 170 l~~Ry--~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s 216 (289)
T KOG0567|consen 170 LFERY--RAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS 216 (289)
T ss_pred HHHHH--hhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc
Confidence 44444 33333 444556677788887887753
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.41 E-value=0.013 Score=62.83 Aligned_cols=113 Identities=23% Similarity=0.195 Sum_probs=83.9
Q ss_pred ChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccC
Q 000797 993 SPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1072 (1280)
Q Consensus 993 ~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede 1072 (1280)
+|.||.-++.++|.++... .......++.+...|.|.++.|+..|+..|+.++.. +.-.+. ..+..++...+.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k---~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVK---GQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cceeeh---hhhhHHHHHHHcCC
Confidence 5889999999999887541 123455688999999999999999999999999854 222222 22323334466999
Q ss_pred ChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCC
Q 000797 1073 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD 1117 (1280)
Q Consensus 1073 ~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~ 1117 (1280)
+++||..|-..|..+... .... -+.+.++.++.++.+.
T Consensus 76 ~~~Ir~~A~~~~~e~~~~---~~~~----~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK---RNPN----IIYNNFPELISSLNNC 113 (178)
T ss_pred CHHHHHHHHHHHHHHHHh---ccch----HHHHHHHHHHHHHhCc
Confidence 999999999999999962 1222 2467888888888875
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.40 E-value=0.016 Score=56.48 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=80.6
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhH-HHHHHhccccccCChhhHHHHHHHHHHHhhccCCcch
Q 000797 1018 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL-NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1096 (1280)
Q Consensus 1018 ~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~-~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~ 1096 (1280)
.+++.+++.|.+.+..+...|+.+|.++....+ .....+.- .+...+.+++.+.++.+|..|..+++.++...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~----- 80 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP----- 80 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc-----
Confidence 368888999999888999999999999986532 22222222 56666777888999999999999999998621
Q ss_pred HHHHHHHH-HhHHHHHH-hccCCCHHHHHHHHHHHHhhc
Q 000797 1097 EAFLEQIH-AMLPRLIL-HIYDDDLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1097 ~~~~eqv~-~~LvpLLl-HL~D~~~~V~~ack~tL~~~a 1133 (1280)
....+.+. ..++|.+. +++|++..+++.+..+|..++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12222222 33555555 688889999999999998765
No 69
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.39 E-value=0.064 Score=63.58 Aligned_cols=194 Identities=15% Similarity=0.137 Sum_probs=139.7
Q ss_pred CchhhHHHHHHHHHHHHHhhCC--h--hHHHHHHHHhhhhcc-ccccchHHHHHHHHHhhhCCCchh-hHHHHHHHHHHh
Q 000797 914 NDKEKWINLIGDVAGCVSIKRP--K--EVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGFD-SLLEQMVEALCR 987 (1280)
Q Consensus 914 ~~~~~~~~gV~lLar~l~~~~~--~--~~~~il~~l~~~L~s-~~~~~R~~a~aflsEll~~~~~~~-~l~~~~i~~L~~ 987 (1280)
+..+....|+..|-..++.... | +...|+..+...|.. .++..|..|.-.+.|.+.+.+..- .--+-.+..+.+
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 4455666777778877776533 2 588899999999988 778999999999999999876621 112334556666
Q ss_pred hhCCCChhHHHHHHhh-ccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhc
Q 000797 988 HVSDESPTVRGLCLRG-LVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1066 (1280)
Q Consensus 988 ~l~D~~~~VR~laLrG-Lg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr 1066 (1280)
.-+|+.+.|-..|-.. +.-++.+.--.-...+-+.++. .|++....++..+.++.+.++.+.+..++..|+.-+.
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 7778776554444443 2222322110111222333433 5788889999999999999999999999999999999
Q ss_pred cccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHH
Q 000797 1067 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1111 (1280)
Q Consensus 1067 ~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1111 (1280)
.-++..+..||.+|+.-+=++.+..+.+..+|+++|+-.+-.-|+
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 999999999999999998888875555888999988665555544
No 70
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.35 E-value=0.16 Score=64.53 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=104.5
Q ss_pred HHHHHHHHhhhhcccc----ccchHHHHHHHHHhhhC-CCch--------hhHHHHHHHHHHhhhCCCChhHHHHHHhhc
Q 000797 938 VQTICLILTKSINRQQ----RFQREAAAAALSEFVRY-SGGF--------DSLLEQMVEALCRHVSDESPTVRGLCLRGL 1004 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~----~~~R~~a~aflsEll~~-~~~~--------~~l~~~~i~~L~~~l~D~~~~VR~laLrGL 1004 (1280)
-+.+++.+..+++++. ..=|.+|+..++.+++. |... ..+.+.+...|.+..++.+...+.+.||||
T Consensus 391 t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 391 TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 4556666666666543 33457888999998882 3221 234455666666666677788899999999
Q ss_pred cCCcchhhhhhHhHHHHHHHhhcc---CCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccc-cCChhhHHHH
Q 000797 1005 VQIPSIHIHQYATQVLSVILALLD---DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNA 1080 (1280)
Q Consensus 1005 g~l~~~~v~~~~~~lL~all~~L~---d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fe-de~~~vR~aA 1080 (1280)
||++... .++.+..-+. +....++..|+.+|+++.... .+.+...+.+| |++ +++.+||.+|
T Consensus 471 GN~g~~~-------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i------~~n~~e~~EvRiaA 536 (574)
T smart00638 471 GNAGHPS-------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD-PRKVQEVLLPI------YLNRAEPPEVRMAA 536 (574)
T ss_pred hccCChh-------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC-chHHHHHHHHH------HcCCCCChHHHHHH
Confidence 9999743 2333333333 234579999999999887543 34455555554 334 4889999999
Q ss_pred HHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHH
Q 000797 1081 FAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1129 (1280)
Q Consensus 1081 i~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL 1129 (1280)
+.++=..- ......++ +.-.+- .|++.+|+.....+|
T Consensus 537 ~~~lm~t~------P~~~~l~~----ia~~l~--~E~~~QV~sfv~S~l 573 (574)
T smart00638 537 VLVLMETK------PSVALLQR----IAELLN--KEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHhcC------CCHHHHHH----HHHHHh--hcCcHHHHHHhHHhh
Confidence 98765431 12223333 333332 378889987665443
No 71
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.42 Score=59.16 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=101.4
Q ss_pred hhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHh
Q 000797 946 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILA 1025 (1280)
Q Consensus 946 ~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~ 1025 (1280)
...|+|+--..+..+-.|++-|++.. ..+.+-+++.+.+-+...|++.-.+||.-+||++..++.+-...=++ +
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n---~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~---K 153 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN---SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP---K 153 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc---hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH---H
Confidence 46777888888899999999999876 45667778889999999999999999999999998754332222233 2
Q ss_pred hccCCC--hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhc
Q 000797 1026 LLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1090 (1280)
Q Consensus 1026 ~L~d~d--~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~ 1090 (1280)
.|-..+ +-|...|..+|-++...- ++-+.+ -.-+.|+-.+++|..-.|-.||+.+.-.+++.
T Consensus 154 lLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 154 LLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKK 217 (938)
T ss_pred HHhCCcchHHHHHHHHHHHHHHHhcC-ccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHc
Confidence 233333 336688888888888763 222222 13467888999999999999999999999974
No 72
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.09 Score=64.42 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=73.8
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC---------c
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS---------K 1051 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~---------~ 1051 (1280)
+...|.....|-++.||..|+.||-.+..+ -++++.+-.-..+.+.|.+++|+.+|++.+.-..+... .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 344466667888999999999998777763 34455666667788888889999999888877765541 1
Q ss_pred ccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1052 DAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1052 ~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
+-....+.++ ..-..|-+-.||.-|+.+||..-.
T Consensus 277 kl~D~aF~~v----C~~v~D~sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 277 KLKDAAFSSV----CRAVRDRSLSVRVEAAKALGEFEQ 310 (823)
T ss_pred hhHHHHHHHH----HHHHhcCceeeeehHHHHhchHHH
Confidence 1122333344 445667888999999999998765
No 73
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.18 E-value=0.15 Score=57.82 Aligned_cols=164 Identities=20% Similarity=0.224 Sum_probs=108.2
Q ss_pred HHHHHhhhhcccc-ccchHHHHHHHHHhhhCCCchhhHHHH--HHHHHHhhhCCCChhHHHHHHhhccCCcch-----hh
Q 000797 941 ICLILTKSINRQQ-RFQREAAAAALSEFVRYSGGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPSI-----HI 1012 (1280)
Q Consensus 941 il~~l~~~L~s~~-~~~R~~a~aflsEll~~~~~~~~l~~~--~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-----~v 1012 (1280)
-++.+..+|++.. +.-+-.|...++..-..+.. +..+.. .++.+.+-+.+|++.||.-|+.+|.|++.. ++
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3444555555443 33444444555554333322 222222 567888889999999999999999999854 67
Q ss_pred hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccC
Q 000797 1013 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1092 (1280)
Q Consensus 1013 ~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~ 1092 (1280)
+.|.++++.-+.+. ..|+++.+.++..|.++- ++ .+...++.+-...+.+++...+..+|.-+..++-.|+...
T Consensus 92 k~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np- 165 (254)
T PF04826_consen 92 KMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP- 165 (254)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-
Confidence 77888888777664 336789998888888873 22 2233444455555678888999999999999999998621
Q ss_pred CcchHHHHHHHHHhHHHHH
Q 000797 1093 GSQREAFLEQIHAMLPRLI 1111 (1280)
Q Consensus 1093 ~~~~~~~~eqv~~~LvpLL 1111 (1280)
.--++-+..|+..+++.|+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLF 184 (254)
T ss_pred HHHHHHHhccchhHHHHHH
Confidence 1124455566666666544
No 74
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.23 Score=63.26 Aligned_cols=189 Identities=17% Similarity=0.201 Sum_probs=131.5
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCCh
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 994 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~ 994 (1280)
+...-.+|+.-+...|+.... +..++..+++...+.+...+..-=. -+...+......---.+|.+.+-++|||+
T Consensus 32 n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~yl---Yl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYL---YLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHH---HHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 455678888878878876544 7777777777777555444443322 22333333222223367899999999999
Q ss_pred hHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCCh
Q 000797 995 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1074 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~ 1074 (1280)
.+|.+|||-|+.+...+ ..+++++++.+.+.|.+.-|+..|..++.++-+. +.+-+... .....+.-+..|+++
T Consensus 107 ~iR~~AlR~ls~l~~~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~--g~~~~l~~l~~D~dP 180 (757)
T COG5096 107 EIRGFALRTLSLLRVKE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHEL--GLIDILKELVADSDP 180 (757)
T ss_pred HHHHHHHHHHHhcChHH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcc--cHHHHHHHHhhCCCc
Confidence 99999999999988654 4678899999999999999999999999999853 33322221 023334556789999
Q ss_pred hhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCC
Q 000797 1075 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1118 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~ 1118 (1280)
.|-++|+..+-.+-. +.-.+|...+...+..|.+-+.+..
T Consensus 181 ~Vi~nAl~sl~~i~~----e~a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 181 IVIANALASLAEIDP----ELAHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred hHHHHHHHHHHHhch----hhhhhHHHHHHHHhhhccchhhhhh
Confidence 999999999888764 2456666666666666555444433
No 75
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.11 E-value=0.0072 Score=45.29 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHHh
Q 000797 1223 FGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1223 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1253 (1280)
+..+.. +++||+|.||..|+++||.+.+.+
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHhhC
Confidence 456777 899999999999999999998753
No 76
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.95 E-value=0.2 Score=63.75 Aligned_cols=210 Identities=16% Similarity=0.131 Sum_probs=150.2
Q ss_pred CCC-chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCC-Cc--------hhhHHHH-
Q 000797 912 EQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GG--------FDSLLEQ- 980 (1280)
Q Consensus 912 ~w~-~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~-~~--------~~~l~~~- 980 (1280)
||- ..+-..++..-+.++++-.+.+...+|...+.-.|++++-.. .|.-.|+-++..+ +. .+.+.++
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~--~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGS--PAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccc--hHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 664 455566666667788888888888999999999998866443 3333444444332 11 1223333
Q ss_pred ----HHHHHHhhhCCCChhHHHHHHhhccCCc----chhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhc---cC
Q 000797 981 ----MVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK---SS 1049 (1280)
Q Consensus 981 ----~i~~L~~~l~D~~~~VR~laLrGLg~l~----~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~---~l 1049 (1280)
+++.|.+..+-....+|..=+.||.++- ..-+-...+.++|.++.+|+=.|..|..++...+..++. .+
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 8899999998777788999999888654 335566779999999999998888887777777777664 44
Q ss_pred CcccchhhhHHHHHHhcccccc-C--ChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHH
Q 000797 1050 SKDAVEPILLNLSVRLRNLQVS-M--NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1126 (1280)
Q Consensus 1050 ~~~~~~~~l~~l~~~lr~~fed-e--~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack 1126 (1280)
..++++.+.+.+ ..+=.| + ...||..|...+|.|.++...+.-.+|+.+|+++|.|-| .|+---||+.|-
T Consensus 944 ~t~~~~Tlvp~l----Lsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L---dDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 944 QTEHLSTLVPYL----LSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL---DDKKRLVRKEAV 1016 (1030)
T ss_pred chHHHhHHHHHH----HhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc---CcHHHHHHHHHH
Confidence 445555444332 222222 2 278999999999999998778888999999999999965 677778998887
Q ss_pred HHHH
Q 000797 1127 NTLK 1130 (1280)
Q Consensus 1127 ~tL~ 1130 (1280)
+|=.
T Consensus 1017 ~tR~ 1020 (1030)
T KOG1967|consen 1017 DTRQ 1020 (1030)
T ss_pred HHhh
Confidence 7643
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=2.8 Score=53.24 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=108.1
Q ss_pred HHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc---hhhHHHHHHHHHHhhhCCCChhHHHHHHh
Q 000797 926 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLR 1002 (1280)
Q Consensus 926 Lar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~---~~~l~~~~i~~L~~~l~D~~~~VR~laLr 1002 (1280)
+.|-+-+..+ ....+|+-+.--.-..-+..|-++=|++-|.+..-.+ ...+..-.++.|.+-|..++-.+|=+||.
T Consensus 257 lLriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 257 LLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 3444444333 4555555555555555566777777888887775222 34566667888888888888889999999
Q ss_pred hccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHH
Q 000797 1003 GLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRN 1079 (1280)
Q Consensus 1003 GLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~a 1079 (1280)
+|+.+-.. -+.+|+. .++++|+|.|..+.++|+.-+-.+++. .. ...++..+-.|++.-++++|.-
T Consensus 336 ~L~r~V~~d~~avqrHr~----tIleCL~DpD~SIkrralELs~~lvn~---~N----v~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRS----TILECLKDPDVSIKRRALELSYALVNE---SN----VRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred hHHhhhcCCcHHHHHHHH----HHHHHhcCCcHHHHHHHHHHHHHHhcc---cc----HHHHHHHHHHHHHhccHHHHHH
Confidence 98876432 4455544 456677888888889888888888764 22 2345556666777777777766
Q ss_pred HHHHHHHHhh-ccCCcchHHHHHHHHHhH
Q 000797 1080 AFAAFGALSN-FGVGSQREAFLEQIHAML 1107 (1280)
Q Consensus 1080 Ai~lfG~L~~-~~~~~~~~~~~eqv~~~L 1107 (1280)
-+.-.-.++. |+ ..+.++.++..+.+
T Consensus 405 ~as~I~~laEkfa--P~k~W~idtml~Vl 431 (866)
T KOG1062|consen 405 IASKIAELAEKFA--PDKRWHIDTMLKVL 431 (866)
T ss_pred HHHHHHHHHHhcC--CcchhHHHHHHHHH
Confidence 6655555553 43 24556666554443
No 78
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.84 E-value=0.28 Score=63.90 Aligned_cols=196 Identities=16% Similarity=0.120 Sum_probs=120.7
Q ss_pred hHHHHHHHhhccCCChHHHHHHHHHHHHH------hccCCcccchhhhHHHHHHhcccccc-CChhhHHHHHHHHHHHhh
Q 000797 1017 TQVLSVILALLDDLDESVQLTAVSCLLTI------LKSSSKDAVEPILLNLSVRLRNLQVS-MNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d~~V~~ea~~~L~~l------l~~l~~~~~~~~l~~l~~~lr~~fed-e~~~vR~aAi~lfG~L~~ 1089 (1280)
..+||-++..+.|.+.+|+..|+.+|.++ +...+....- .-|...|..|..| ....||.+=.+-++.||.
T Consensus 461 DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~---eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 461 DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP---EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH---hhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 67899999999999999999999999988 6665544333 3345677788777 778899888888888776
Q ss_pred ccC------------------------CcchHHHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhhhHHhhh
Q 000797 1090 FGV------------------------GSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIF 1144 (1280)
Q Consensus 1090 ~~~------------------------~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~ 1144 (1280)
-+- ....+...++++..+-..+. -|.|+.+-|+++=-.+++
T Consensus 538 tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~-------------- 603 (1431)
T KOG1240|consen 538 TAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESII-------------- 603 (1431)
T ss_pred HHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--------------
Confidence 210 01112222333333333333 245666666554433333
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHH
Q 000797 1145 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1224 (1280)
Q Consensus 1145 ~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~ 1224 (1280)
.+|.++.+.-.+ +..++..+.|+++-.+.+|.+=---|-++--.+..+-. .|.+..
T Consensus 604 ------------------~LC~FFGk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~----seyllP 659 (1431)
T KOG1240|consen 604 ------------------PLCVFFGKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSV----SEYLLP 659 (1431)
T ss_pred ------------------HHHHHhhhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeH----HHHHHH
Confidence 334444432211 12355567799999999997422212111111111111 255666
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1225 LLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1225 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
-|+. -+.|+++.|=..|-+++.-|.|..+
T Consensus 660 Ll~Q-~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 660 LLQQ-GLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred HHHH-hccCcchhhHHHHHHHHHHHHHhcc
Confidence 6666 5889999999999999998887654
No 79
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.17 Score=62.18 Aligned_cols=248 Identities=16% Similarity=0.147 Sum_probs=145.3
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc-------hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-------FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1010 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-------~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~- 1010 (1280)
+.+-+...+.++..++.=|.+|+-.+.-.-|-++. ..-+.+.+...+...++|-+..||+.|.+.||.+...
T Consensus 233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 34455566777788888898887666555553322 2345577888999999999999999999999987532
Q ss_pred -hh--hhhHhHHHH-------------HHHhhccC-----CChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccc
Q 000797 1011 -HI--HQYATQVLS-------------VILALLDD-----LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1069 (1280)
Q Consensus 1011 -~v--~~~~~~lL~-------------all~~L~d-----~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~f 1069 (1280)
++ .-+-+.++. .+++.-+= .+.+|..|. .+.+..+-+----|-.+-+=|
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee----------~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE----------DDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh----------ccccccccccccccceeeeec
Confidence 11 111122222 22222200 011222222 111111111111122233568
Q ss_pred ccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCC
Q 000797 1070 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCF 1149 (1280)
Q Consensus 1070 ede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~ 1149 (1280)
|||-.+||.+|+.-++.|+-...+ |-...+..|+- -++|+..+||-.|-+||..++..+. +
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfLvD---MfNDE~~~VRL~ai~aL~~Is~~l~-----------i 443 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPG-----FAVRALDFLVD---MFNDEIEVVRLKAIFALTMISVHLA-----------I 443 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHhe-----------e
Confidence 999999999999999999963332 33333344443 4689999999999999999886411 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHH
Q 000797 1150 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1229 (1280)
Q Consensus 1150 ~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~ 1229 (1280)
. ++-++.++..| .+..++||.++--+++.. .+.+.++..+=+..+...|..
T Consensus 444 --~-----eeql~~il~~L-------------------~D~s~dvRe~l~elL~~~--~~~d~~~i~m~v~~lL~~L~k- 494 (823)
T KOG2259|consen 444 --R-----EEQLRQILESL-------------------EDRSVDVREALRELLKNA--RVSDLECIDMCVAHLLKNLGK- 494 (823)
T ss_pred --c-----HHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhh-
Confidence 1 33555555544 445677888766555432 234444433334445555555
Q ss_pred hccCCChhhHHHHHH
Q 000797 1230 LSQSADAIVRATCSS 1244 (1280)
Q Consensus 1230 Ll~Dpdp~VR~~Aa~ 1244 (1280)
-=+|.|...+|.+-.
T Consensus 495 yPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 495 YPQDRDEILRCMGRI 509 (823)
T ss_pred CCCCcHHHHHHHHHH
Confidence 356888888875543
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.78 E-value=1.6 Score=53.10 Aligned_cols=310 Identities=12% Similarity=0.121 Sum_probs=181.8
Q ss_pred chhhHHHHHHHHHHHHHhhCCh-hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCC
Q 000797 915 DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 993 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~-~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~ 993 (1280)
++-.-+.++++|.+ .++... -.-.+++++..-.+=.+.--.+..+-+.++++.... ..+.++.+.|..|++|--
T Consensus 203 ~~isqYHalGlLyq--~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~---q~~~q~rpfL~~wls~k~ 277 (898)
T COG5240 203 NPISQYHALGLLYQ--SKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENS---QALLQLRPFLNSWLSDKF 277 (898)
T ss_pred ChHHHHHHHHHHHH--HhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhCh---HHHHHHHHHHHHHhcCcc
Confidence 44445667777876 333222 233344444333211111122333445566665432 345677899999999976
Q ss_pred hhHHHHHHhhccCCcchh-hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccC
Q 000797 994 PTVRGLCLRGLVQIPSIH-IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1072 (1280)
Q Consensus 994 ~~VR~laLrGLg~l~~~~-v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede 1072 (1280)
..|-.-+.|.+..++... ...+..+.+.++-..|......-+-.||..|..+-..-... ++..=. .+-.+..|+
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~----evEsLIsd~ 352 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNK----EVESLISDE 352 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecCh----hHHHHhhcc
Confidence 667666666655544332 12344556666666665544555688999999987654332 221111 234567777
Q ss_pred ChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCC
Q 000797 1073 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNS 1151 (1280)
Q Consensus 1073 ~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~ 1151 (1280)
|-.+ |..+.-.|.+-|..+. .+.+++.++.++--+.|.=.-++--+-++|+-.-|. +| ..-..+..-+.++
T Consensus 353 Nr~I---styAITtLLKTGt~e~----idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k~~s~l~FL~~~L~~e 424 (898)
T COG5240 353 NRTI---STYAITTLLKTGTEET----IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-KKLSYLDFLGSSLLQE 424 (898)
T ss_pred cccc---hHHHHHHHHHcCchhh----HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-HHHHHHHHHHHHHHhc
Confidence 6555 4445556666433332 234444455555446666555555555555544442 33 3223333322333
Q ss_pred CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhc
Q 000797 1152 DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1231 (1280)
Q Consensus 1152 ~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll 1231 (1280)
| ++.|-..+-|...-.++.-|+.-..-+...-.|..+.+-+ .-++..+|.+...-|...-.....-.+++.++-
T Consensus 425 G-g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL--- 498 (898)
T COG5240 425 G-GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLIL--- 498 (898)
T ss_pred c-cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---
Confidence 4 5666555555566677888888777777777788776542 447888999998877655555677888888875
Q ss_pred cCCChhhHHHHHHHHHHHH
Q 000797 1232 QSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1232 ~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+...||..|.+||..++
T Consensus 499 --EN~ivRsaAv~aLskf~ 515 (898)
T COG5240 499 --ENNIVRSAAVQALSKFA 515 (898)
T ss_pred --hhhHHHHHHHHHHHHhc
Confidence 78999999999997776
No 81
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.78 E-value=0.21 Score=61.80 Aligned_cols=188 Identities=18% Similarity=0.153 Sum_probs=119.5
Q ss_pred hHHHHHHHHhhhhccccccchHHHH-HHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hh-
Q 000797 937 EVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI- 1012 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~-aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v- 1012 (1280)
++-.++.+..+.-+++.-..|+... +-|.+-+...+....+...++..+.++..-++..||.-+++=|.-+... .+
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid 120 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID 120 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC
Confidence 5556666666666677777776543 2233333333333457788999999999999999999998876655431 11
Q ss_pred hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhcc-CCcc-cchhhhHHHHHHhccccccCChhhHHHHHHHHHH----
Q 000797 1013 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS-SSKD-AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGA---- 1086 (1280)
Q Consensus 1013 ~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~-l~~~-~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~---- 1086 (1280)
.-....+..+++.-+.|..+.|+.+|+.+|+++=+. .+++ .+...+..+ .-.|.+++||.+|..-+.-
T Consensus 121 d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------iqnDpS~EVRRaaLsnI~vdnsT 194 (892)
T KOG2025|consen 121 DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------IQNDPSDEVRRAALSNISVDNST 194 (892)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------HhcCCcHHHHHHHHHhhccCccc
Confidence 113466788999999999999999999999998742 2221 234444433 3478999999999875432
Q ss_pred ---HhhccCCcchHHHHHHHHHh--------------HHHHHH-hccCCCHHHHHHHHHHHHh
Q 000797 1087 ---LSNFGVGSQREAFLEQIHAM--------------LPRLIL-HIYDDDLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1087 ---L~~~~~~~~~~~~~eqv~~~--------------LvpLLl-HL~D~~~~V~~ack~tL~~ 1131 (1280)
+..-+ +.-..+-+.-+.+- -+-|+- -|.|-+.+|++||++++..
T Consensus 195 lp~IveRa-rDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 195 LPCIVERA-RDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred chhHHHHh-hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 22100 00111111112222 222333 3889999999999999877
No 82
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.69 E-value=0.12 Score=66.20 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=103.4
Q ss_pred HHHHHHHHhhhhcccc----ccchHHHHHHHHHhhhC-CCc--------------hhhHHHHHHHHHHhhhCCCChhHHH
Q 000797 938 VQTICLILTKSINRQQ----RFQREAAAAALSEFVRY-SGG--------------FDSLLEQMVEALCRHVSDESPTVRG 998 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~----~~~R~~a~aflsEll~~-~~~--------------~~~l~~~~i~~L~~~l~D~~~~VR~ 998 (1280)
-..++..+..+++++. ..=|.+|+..++.+++. |.. .....+.+...|.......+...+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4566666666666543 34457888888888873 111 2344556667777777788889999
Q ss_pred HHHhhccCCcchhhhhhHhHHHHHHHhhccCC---ChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccc-cCCh
Q 000797 999 LCLRGLVQIPSIHIHQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNV 1074 (1280)
Q Consensus 999 laLrGLg~l~~~~v~~~~~~lL~all~~L~d~---d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fe-de~~ 1074 (1280)
++||||||++. +..++.+...+.+. ...++..|+.+|+++...- ...+..++..| |++ .|+.
T Consensus 509 ~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I------~~n~~e~~ 574 (618)
T PF01347_consen 509 VYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI------FMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH------HH-TTS-H
T ss_pred HHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH------hcCCCCCh
Confidence 99999999995 45577777777776 4578999999999885443 34455555544 444 3779
Q ss_pred hhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHH
Q 000797 1075 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1129 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL 1129 (1280)
+||.+|+.++=.-. ..... ++.+.-.+ -.|++.+|+.....+|
T Consensus 575 EvRiaA~~~lm~~~------P~~~~----l~~i~~~l--~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 575 EVRIAAYLILMRCN------PSPSV----LQRIAQSL--WNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHHT---------HHH----HHHHHHHH--TT-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC------CCHHH----HHHHHHHH--hhCchHHHHHHHHHhc
Confidence 99999986654321 12222 23333333 2588999998877665
No 83
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.068 Score=61.19 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=90.8
Q ss_pred hCCCChhHHHHHHhhccCCcch-hh--hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhc-cCCcccchhhhHHHHHH
Q 000797 989 VSDESPTVRGLCLRGLVQIPSI-HI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILK-SSSKDAVEPILLNLSVR 1064 (1280)
Q Consensus 989 l~D~~~~VR~laLrGLg~l~~~-~v--~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~-~l~~~~~~~~l~~l~~~ 1064 (1280)
.+..+..||+-+.-.|.|+... +- ..-+..-+|.+++.+...|.+|...+..+++.|.- ....+.+..-=+.+...
T Consensus 176 akskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~ 255 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPA 255 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHH
Confidence 3445678999999999999743 11 11223347889999998899999999999998842 11112222223346667
Q ss_pred hccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHH-HhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 000797 1065 LRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQV 1132 (1280)
Q Consensus 1065 lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1132 (1280)
+-.++++.++++++-|--++|.++. +.+.-++-+- ++++.++--|+|+-....-+.-..++.+
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnlas-----dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNLAS-----DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhhcc-----cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 7789999999999999999999985 2222223333 3455555567888655555554444444
No 84
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.29 E-value=10 Score=46.35 Aligned_cols=331 Identities=18% Similarity=0.166 Sum_probs=188.7
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHccCCCCCCCccCCCCCCCCCCCcccchHHHHHHHHHHHHHhcCCcch-HHHHHH
Q 000797 778 MQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVG-KKAVEK 856 (1280)
Q Consensus 778 ~~~ai~~La~h~~l~~~~l~~ll~~L~~~p~~~~~~~~~~~~~~~~~~~~~~~~~laAt~aL~Ell~~~~~~~-~~av~~ 856 (1280)
+++++..++.++.+...+...++.++....-... ....+.++..+|+.++....+.. .....+
T Consensus 22 ~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~----------------~~~~~~~il~tl~~~~~~~~~~~~~~~~~~ 85 (415)
T PF12460_consen 22 ILEALAALSTSPQILETLSIRLLNKLSIVCQSES----------------SSDYCHAILSTLQSLLEKKQEDKQFEDNSW 85 (415)
T ss_pred HHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC----------------ChHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 5677777777766555555566665532111100 11235678889999888863232 235666
Q ss_pred hhHHHHHHHHHHHhhhcccCCCCCCCh--HHHHHHHHHHHHHhhcchHHHHHHH----------hcCCCC-----chhhH
Q 000797 857 SYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECVGDLEMRKILA----------RDGEQN-----DKEKW 919 (1280)
Q Consensus 857 ~fp~Lf~aLL~ql~~~~~l~~~~~~~P--~~~~l~Alk~ll~~~~~~~~~~~l~----------~~~~w~-----~~~~~ 919 (1280)
+|.+.+.-.++...........+ .++ ...+...++.......-.+..+.++ ....+. ..+..
T Consensus 86 y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 164 (415)
T PF12460_consen 86 YFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQ 164 (415)
T ss_pred HHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccccccc
Confidence 66664444444443322221111 112 1111111222111111111111111 001111 11234
Q ss_pred HHHHHHHHHHHHhhCC----hhHHHHHHHHhhhhcc-ccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhh-CCCC
Q 000797 920 INLIGDVAGCVSIKRP----KEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDES 993 (1280)
Q Consensus 920 ~~gV~lLar~l~~~~~----~~~~~il~~l~~~L~s-~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l-~D~~ 993 (1280)
..-+.+.+..++.-++ +....++..+.....+ .++..|..+.-.++-++|..+... .++.++..+.... .+.+
T Consensus 165 ~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l~~~l~~~~~~~~~~~~ 243 (415)
T PF12460_consen 165 SRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DLDEFLDSLLQSISSSED 243 (415)
T ss_pred ccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hHHHHHHHHHhhhcccCC
Confidence 4445556655554332 2455677777777555 448889999999999999854422 3344555555444 6677
Q ss_pred hhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCc-------ccch-----hhh
Q 000797 994 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-------DAVE-----PIL 1058 (1280)
Q Consensus 994 ~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~-------~~~~-----~~l 1058 (1280)
+.-|.-+++.+.+++.+ +.++....++.-+++.|++ +.+-..|..+++-++...+. -.++ .++
T Consensus 244 ~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 244 SELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 77888888888888765 4445566778888888886 55666666666666654211 1122 345
Q ss_pred HHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh-ccCCCHHHHHHHHHHHHhh
Q 000797 1059 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQV 1132 (1280)
Q Consensus 1059 ~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~ 1132 (1280)
..+..++-..|..-++..|..-..++..+.+... +..+..+ +..+.||++. |.=+|++|+.++-.||..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~vl~~~-l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP---KSVLLPE-LPTLLPLLLQSLSLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC---HHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5666677777777777799999999999998432 4444444 4567888874 6667778888776666653
No 85
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.8 Score=58.13 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=153.4
Q ss_pred HHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 982 VEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 982 i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
.+.-...+.||-+-+|..+|+-|..+... +-......++.+.++.|.|.|+-|-+.|++++-.+.+..+++ ++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----il 804 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----IL 804 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----hH
Confidence 33445567999999999999999988762 334455778999999999988889999999998888875543 23
Q ss_pred HHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh
Q 000797 1059 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1138 (1280)
Q Consensus 1059 ~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w 1138 (1280)
..++..=-.-=++.+.+.|.--=++||.++. +.|.-...|++++.+....- ..|++-.-|..+-.+||.|...+.-
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~q-a~Gel~~~y~~~Li~tfl~g---vrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQ-ALGELVFKYKAVLINTFLSG---VREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHH-HhccHHHHHHHHHHHHHHHh---cCCchHHHHHhHHHHHHHHHHHHhh
Confidence 2322211111111223334444488888886 56777888888766655543 3488878899888888888765432
Q ss_pred hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcC
Q 000797 1139 GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF 1218 (1280)
Q Consensus 1139 ~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~ 1218 (1280)
.+ .+|+.+....+.+-.. -+..+.+||+|+..+-.+++.+..+.+. +.
T Consensus 881 ~v-----------------sd~~~ev~~~Il~l~~--------------~d~s~~vRRaAv~li~~lL~~tg~dlLp-il 928 (982)
T KOG4653|consen 881 QV-----------------SDFFHEVLQLILSLET--------------TDGSVLVRRAAVHLLAELLNGTGEDLLP-IL 928 (982)
T ss_pred hh-----------------hHHHHHHHHHHHHHHc--------------cCCchhhHHHHHHHHHHHHhccchhhHH-HH
Confidence 11 1244444444433111 1566779999999998888755533321 11
Q ss_pred ---HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1219 ---YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1219 ---~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
.-+....+..+...++|-.+|-.|-.++..++..-.
T Consensus 929 r~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 929 RLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 113334455557789999999999999888886554
No 86
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=95.26 E-value=0.98 Score=51.43 Aligned_cols=220 Identities=17% Similarity=0.160 Sum_probs=149.7
Q ss_pred hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccc--cC-------------ChhhHHHHH
Q 000797 1017 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--SM-------------NVKMRRNAF 1081 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fe--de-------------~~~vR~aAi 1081 (1280)
+|+.=+..+.|+...+..-.+|+.-|.++++.++-++- -..+.....+|-.. .. ++.--..++
T Consensus 6 pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~--~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDP--DVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 56666677778777788889999999999998875432 11222233333332 12 223335677
Q ss_pred HHHHHHhhcc----CCcchHHHHHHHHHhHHHHHHhccCCCH----HHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCC
Q 000797 1082 AAFGALSNFG----VGSQREAFLEQIHAMLPRLILHIYDDDL----SVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1152 (1280)
Q Consensus 1082 ~lfG~L~~~~----~~~~~~~~~eqv~~~LvpLLlHL~D~~~----~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~ 1152 (1280)
.++..+.... .|.....+.-.+..+++-++.|+.+++| .-...+..+|...|.--+. .+..++.... .+
T Consensus 84 ~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya--~~ 161 (262)
T PF14225_consen 84 RLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYA--KG 161 (262)
T ss_pred HHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHH--hc
Confidence 8888887631 1222235667899999999999999882 4556677888888877666 6666555432 22
Q ss_pred CCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhc
Q 000797 1153 HRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1231 (1280)
Q Consensus 1153 ~~l~~~~f~~~~~~~L~~~~-~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll 1231 (1280)
+--+-++|++.+++++.+.| |+.-..-+.-.++.+.+.-+-+|......+-.++++.+.+.- .+ .+++..+.+ ++
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~-~dlispllr-lL 237 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HG-ADLISPLLR-LL 237 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cc-hHHHHHHHH-Hh
Confidence 22334899999999999988 786555555577888888889999999999999998875532 44 447777777 45
Q ss_pred cCCChhhHHHHHHHHHHHH
Q 000797 1232 QSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1232 ~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+.+ .+.+||..+.
T Consensus 238 ~t~------~~~eAL~VLd 250 (262)
T PF14225_consen 238 QTD------LWMEALEVLD 250 (262)
T ss_pred CCc------cHHHHHHHHH
Confidence 543 4556666554
No 87
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.23 E-value=0.75 Score=55.92 Aligned_cols=210 Identities=15% Similarity=0.137 Sum_probs=135.4
Q ss_pred hhhHHHHHHHHHHHHHhhC-ChhHHHHHHHHhhhhccccccchHHHH--HHHHHhhhCCCchhhHHHHHHHHHHhhhCCC
Q 000797 916 KEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAAA--AALSEFVRYSGGFDSLLEQMVEALCRHVSDE 992 (1280)
Q Consensus 916 ~~~~~~gV~lLar~l~~~~-~~~~~~il~~l~~~L~s~~~~~R~~a~--aflsEll~~~~~~~~l~~~~i~~L~~~l~D~ 992 (1280)
..+|..-+..|....-++. ..++-+++..+.+.=+.+.-+.|+... +||.-.+..-+.-..+...++..+.+++..+
T Consensus 24 ~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~esk 103 (885)
T COG5218 24 SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESK 103 (885)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCc
Confidence 3455555554544333332 235667777777776677778887653 2333233222222456678899999999999
Q ss_pred ChhHHHHHHhhccCCcch--hh-hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc--cchhhhHHHHHHhcc
Q 000797 993 SPTVRGLCLRGLVQIPSI--HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRN 1067 (1280)
Q Consensus 993 ~~~VR~laLrGLg~l~~~--~v-~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~--~~~~~l~~l~~~lr~ 1067 (1280)
+..||.-+++-|+-+... ++ .-....++..+.+-+.|.++.|+.+|+.+|.+.=+--+.+ .+...+.. .
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~------~ 177 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKD------I 177 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHH------H
Confidence 999999999988766432 21 2245678888999999988999999999999986543322 23333333 2
Q ss_pred ccccCChhhHHHHHHH-------HHHHhh---ccCCcchHHHHHHHHHhHHH-----------HHH-hccCCCHHHHHHH
Q 000797 1068 LQVSMNVKMRRNAFAA-------FGALSN---FGVGSQREAFLEQIHAMLPR-----------LIL-HIYDDDLSVRQAC 1125 (1280)
Q Consensus 1068 ~fede~~~vR~aAi~l-------fG~L~~---~~~~~~~~~~~eqv~~~Lvp-----------LLl-HL~D~~~~V~~ac 1125 (1280)
...|.+++||.+|..- +|-+.. -+.+..+.-+.+.++..+.. ++- -|.|-+.+|+.||
T Consensus 178 vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~ 257 (885)
T COG5218 178 VQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGAL 257 (885)
T ss_pred HhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHH
Confidence 4578999999999754 233322 12234455555665554421 222 3889999999999
Q ss_pred HHHHHh
Q 000797 1126 RNTLKQ 1131 (1280)
Q Consensus 1126 k~tL~~ 1131 (1280)
++++..
T Consensus 258 ~d~ia~ 263 (885)
T COG5218 258 VDAIAS 263 (885)
T ss_pred HHHHHH
Confidence 998864
No 88
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.10 E-value=0.24 Score=64.07 Aligned_cols=200 Identities=17% Similarity=0.158 Sum_probs=147.6
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhCCC-c-hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hh
Q 000797 938 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-G-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI 1012 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~-~-~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v 1012 (1280)
...+-..+..-+.|+.-.+|.-|+.-+...+..+. . ......-+...+.-.++|.|..|-..++.-|.-|+.. ..
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 44445555566778888999999988888888776 1 1111122334556678999999999999988877643 67
Q ss_pred hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccC
Q 000797 1013 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1092 (1280)
Q Consensus 1013 ~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~ 1092 (1280)
..|...+.|++++.+-+.-..++-.+..+++.+++.-.- ..+..-+--+..+-++.+|.--..+|+...+.-+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 889999999999999988777877777888888873222 2333334457888999999999999999876322
Q ss_pred CcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcc
Q 000797 1093 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNS 1146 (1280)
Q Consensus 1093 ~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~ 1146 (1280)
....+.+-++....-++-|.+|-+.+||+|+..++..+-..+|- ....++..
T Consensus 404 --~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~ 456 (815)
T KOG1820|consen 404 --PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKD 456 (815)
T ss_pred --CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 14455566666666666699999999999999999998888777 55554443
No 89
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=1.2 Score=55.73 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=50.2
Q ss_pred HHHHHHhhhCCCchhhHHHHHH---HHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHH
Q 000797 961 AAALSEFVRYSGGFDSLLEQMV---EALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLT 1037 (1280)
Q Consensus 961 ~aflsEll~~~~~~~~l~~~~i---~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~e 1037 (1280)
.-+|-|++........+++.++ +.+.+-|++||.-||...||=|..+-..+ ....++|++..+|+....-|+..
T Consensus 77 ly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~E---Llepl~p~IracleHrhsYVRrN 153 (948)
T KOG1058|consen 77 LYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPE---LLEPLMPSIRACLEHRHSYVRRN 153 (948)
T ss_pred HHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHH---HhhhhHHHHHHHHhCcchhhhhh
Confidence 4677788876544444554433 77888999999999999999877776422 23444555555554444444444
Q ss_pred HHHHHHHH
Q 000797 1038 AVSCLLTI 1045 (1280)
Q Consensus 1038 a~~~L~~l 1045 (1280)
|+.++-.|
T Consensus 154 AilaifsI 161 (948)
T KOG1058|consen 154 AILAIFSI 161 (948)
T ss_pred hheeehhH
Confidence 44444333
No 90
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.78 Score=58.23 Aligned_cols=172 Identities=12% Similarity=0.164 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHh-hCCh--hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHh----hhCCCC
Q 000797 921 NLIGDVAGCVSI-KRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCR----HVSDES 993 (1280)
Q Consensus 921 ~gV~lLar~l~~-~~~~--~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~----~l~D~~ 993 (1280)
.|++.|++-+-+ +.++ .-..++....-++...+..=..-|+--++-|..--+ +.+++-|.+ --+.+-
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------e~il~dL~e~Y~s~k~k~~ 819 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------EDILPDLSEEYLSEKKKLQ 819 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccCCC
Confidence 345555543322 2333 344677777777777777777777776666654321 223333332 222221
Q ss_pred hhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccc-c
Q 000797 994 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-Q 1069 (1280)
Q Consensus 994 ~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~-f 1069 (1280)
+..|...=.++++++.. -+.+|...++..+++|.+|+|..-++.+|..|+.+...+... ++.++.+++..|-.. -
T Consensus 820 ~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd~~~ev~~~Il~l~~ 898 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSDFFHEVLQLILSLET 898 (982)
T ss_pred ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHc
Confidence 22222222444444322 346788899999999999998888999999999999877644 344666666655333 2
Q ss_pred ccCChhhHHHHHHHHHHHhhccCCcchHHHH
Q 000797 1070 VSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1100 (1280)
Q Consensus 1070 ede~~~vR~aAi~lfG~L~~~~~~~~~~~~~ 1100 (1280)
.|.+.-||.||+.+..++.+ +.|.+--|+.
T Consensus 899 ~d~s~~vRRaAv~li~~lL~-~tg~dlLpil 928 (982)
T KOG4653|consen 899 TDGSVLVRRAAVHLLAELLN-GTGEDLLPIL 928 (982)
T ss_pred cCCchhhHHHHHHHHHHHHh-ccchhhHHHH
Confidence 37889999999999999997 4454444543
No 91
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.46 E-value=1.3 Score=57.69 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=136.6
Q ss_pred HhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHH
Q 000797 1024 LALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1103 (1280)
Q Consensus 1024 l~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv 1103 (1280)
...+.+.+=.-..||+.+|-.++..-..+....+.--++.-++.-+-|-|..|-..|...++.+++ +....|+.-+
T Consensus 259 ~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~----~lr~~~~~~~ 334 (815)
T KOG1820|consen 259 ETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK----KLRPLFRKYA 334 (815)
T ss_pred HHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH----hcchhhHHHH
Confidence 344444455567777777777776655233344444555556677889999999999999999997 2345577778
Q ss_pred HHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHH
Q 000797 1104 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGST 1183 (1280)
Q Consensus 1104 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~ 1183 (1280)
...+.+++-.+.|.-+.++.+.+.++-.++. ...+..+....
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--------------------------------------s~~l~~~~~~I 376 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILN--------------------------------------STPLSKMSEAI 376 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHh--------------------------------------cccHHHHHHHH
Confidence 8888888889999999999888777766543 11112223334
Q ss_pred HhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1184 IQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1184 l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
+.++++..+.+|.--..|.+..++.+++.-...-....+...+.. .-.|-|+.||..|.++++-+.|.
T Consensus 377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK-HINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-hccCCcHHHHHHHHHHHHHHHHH
Confidence 567888899999987788888888777655555677889999998 89999999999999999988754
No 92
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=17 Score=46.05 Aligned_cols=115 Identities=21% Similarity=0.249 Sum_probs=74.3
Q ss_pred HHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCC---------chhhHHHHHHHHHHhhhCCCChhH
Q 000797 926 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG---------GFDSLLEQMVEALCRHVSDESPTV 996 (1280)
Q Consensus 926 Lar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~---------~~~~l~~~~i~~L~~~l~D~~~~V 996 (1280)
|=.+++..-|..-+.++.-+.-.+ ++.+|+..+-|.+|.-. +......-++..|...+.|.++..
T Consensus 242 LF~aLtplEPRLgKKLieplt~li------~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNL 315 (877)
T KOG1059|consen 242 LFAALTPLEPRLGKKLIEPITELM------ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNL 315 (877)
T ss_pred HHhhccccCchhhhhhhhHHHHHH------HhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccH
Confidence 334444444443333333333333 34488999999888521 112223446777888889999999
Q ss_pred HHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 000797 997 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1047 (1280)
Q Consensus 997 R~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~ 1047 (1280)
|=++|-+++-++.-+- +..+.-...++.+|+|.|+.|+++|+.-|-.++.
T Consensus 316 KYlgLlam~KI~ktHp-~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 316 KYLGLLAMSKILKTHP-KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhhhCH-HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 9999999998875311 0112224567888999999999999988777765
No 93
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.33 E-value=0.021 Score=42.78 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=23.1
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcc
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPS 1009 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~ 1009 (1280)
+++.+.+.++||++.||..|+++||+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788888899999999999999887754
No 94
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.26 E-value=0.37 Score=54.62 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=76.6
Q ss_pred HHHHhhhC-CCChhHHHHHHhhccCCcch-----hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc-cch
Q 000797 983 EALCRHVS-DESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD-AVE 1055 (1280)
Q Consensus 983 ~~L~~~l~-D~~~~VR~laLrGLg~l~~~-----~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~-~~~ 1055 (1280)
..|...|+ ..+|.++..++-.+||.+.. -++. -..++.+.+.|+++++.|...|+.+|.++-...+.+ .+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 34444455 45789999999999998743 2232 355888999999999999999999999886655433 356
Q ss_pred hhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1056 PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1056 ~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
.++.+++..+.. ..-+..+..++.++++.+.-
T Consensus 93 ~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLtv 124 (254)
T PF04826_consen 93 MYIPQVCEETVS--SPLNSEVQLAGLRLLTNLTV 124 (254)
T ss_pred HHHHHHHHHHhc--CCCCCHHHHHHHHHHHccCC
Confidence 777777776655 34567889999999999863
No 95
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=6.8 Score=49.78 Aligned_cols=268 Identities=14% Similarity=0.190 Sum_probs=165.5
Q ss_pred HHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhhHhHHHH
Q 000797 944 ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLS 1021 (1280)
Q Consensus 944 ~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~~~~lL~ 1021 (1280)
.+.++|+|..+....=|+-++..++.+-.+...+. +...+..-..|+.||++.--=|-+-|.. +...+ =++
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~F----p~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---SIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLF----PAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---SIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHH----HHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---eHH
Confidence 45577889999999999988888887654433333 3334445667889999886666655543 11110 145
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHH
Q 000797 1022 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1101 (1280)
Q Consensus 1022 all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~e 1101 (1280)
.+=..|.|++..++..|+++|+.|= +..+-+-+...++..-.|..+-||..|..++-.+=. -+.... +
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs--Ld~e~k---~ 179 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS--LDPEQK---D 179 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc--CChhhH---H
Confidence 5667899999999999999998763 333444455677889999999999999999888754 233322 2
Q ss_pred HHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchh----hhhhHHhh---h-cccCCCCCCCCChHHHHHHHHHHHHHhCc
Q 000797 1102 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----MEIGVYGI---F-NSHCFNSDHRSDYETFVRDLTRQFVQHFP 1173 (1280)
Q Consensus 1102 qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~----L~w~l~~l---~-~~~~~~~~~~l~~~~f~~~~~~~L~~~~~ 1173 (1280)
|+...+--| |.|..|-|+.++-.|+..|+|- ++--.+.+ + +-..|+.- -.++.+.+|-.+.+|
T Consensus 180 qL~e~I~~L---LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQv------vlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 180 QLEEVIKKL---LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQV------VLINMLTRYARHQLP 250 (968)
T ss_pred HHHHHHHHH---hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHH------HHHHHHHHHHHhcCC
Confidence 443333333 5899999999999999999872 11111111 1 11123321 245555666555444
Q ss_pred ch--------------------------------HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHH
Q 000797 1174 SR--------------------------------IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ 1221 (1280)
Q Consensus 1174 ~~--------------------------------~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~ 1221 (1280)
+- +..++.++-..+.|..+.+=-|+|. .+...-+..+ ...
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aq---l~y~lAP~~~-----~~~ 322 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQ---LFYHLAPKNQ-----VTK 322 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHh---HHHhhCCHHH-----HHH
Confidence 33 3456666667788877765555442 2222223333 355
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1222 VFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1222 ~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
+.++|.. |++ ..+.||-..-+.+..+
T Consensus 323 i~kaLvr-LLr-s~~~vqyvvL~nIa~~ 348 (968)
T KOG1060|consen 323 IAKALVR-LLR-SNREVQYVVLQNIATI 348 (968)
T ss_pred HHHHHHH-HHh-cCCcchhhhHHHHHHH
Confidence 6778888 555 3455665555554443
No 96
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.12 E-value=1.9 Score=51.69 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=126.0
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhh-C-CCchhhHHHHHHHHHHhhhCC-CChhHHHHHHhhccCCcchh--
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVR-Y-SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSIH-- 1011 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~-~-~~~~~~l~~~~i~~L~~~l~D-~~~~VR~laLrGLg~l~~~~-- 1011 (1280)
+..-|.+.+..+=.+....+|.-|+.=+-+++. + ..++.....+++..+.+-|.| .+...|++|||-|+.+...+
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 444444444444334456677777775555554 2 234666667788889999999 89999999999999887653
Q ss_pred -hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhc
Q 000797 1012 -IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1090 (1280)
Q Consensus 1012 -v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~ 1090 (1280)
...+.+..+--.++.=.|.++.|+..|-....+++....+. .-+.+|+..|.. +++..=.+++...-.+..
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e- 435 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFE- 435 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHh-
Confidence 33344444444455545556778888888888888665432 223444444444 445555556644444443
Q ss_pred cCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcc
Q 000797 1091 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNS 1146 (1280)
Q Consensus 1091 ~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~ 1146 (1280)
+-..+.+..++-...+.++---.-....||+.|-+.|-.+-.-+|. .+.--+..
T Consensus 436 --~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 436 --RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred --hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 2234555555444444444456666889999999999998888776 55544444
No 97
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1.8 Score=54.18 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=81.9
Q ss_pred ccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh--ccCCCHHHHHHHHHHHHhhchhhhhhHHhhhc
Q 000797 1068 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH--IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1145 (1280)
Q Consensus 1068 ~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH--L~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~ 1145 (1280)
+..|.++-+|..-+...+- ++++... +..+.=|+| ..|.|.+||.++-.+|+-+. .
T Consensus 527 l~~dkdpilR~~Gm~t~al--Ay~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl-----------~ 584 (929)
T KOG2062|consen 527 LLRDKDPILRYGGMYTLAL--AYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVL-----------F 584 (929)
T ss_pred HhcCCchhhhhhhHHHHHH--HHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeE-----------e
Confidence 3445567777666555443 2222222 123444666 57999999999888877543 1
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHH
Q 000797 1146 SHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGL 1225 (1280)
Q Consensus 1146 ~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~ 1225 (1280)
+ + ++-.-.+.. ...+|-.+++|..||+.+|..--. -+....++-
T Consensus 585 ~----d------p~~~~s~V~------------------lLses~N~HVRyGaA~ALGIaCAG--------tG~~eAi~l 628 (929)
T KOG2062|consen 585 R----D------PEQLPSTVS------------------LLSESYNPHVRYGAAMALGIACAG--------TGLKEAINL 628 (929)
T ss_pred c----C------hhhchHHHH------------------HHhhhcChhhhhhHHHHHhhhhcC--------CCcHHHHHH
Confidence 1 1 001001111 233677889999999999977543 233445677
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHHHhhhc
Q 000797 1226 LVVKLSQSADAIVRATCSSSLGWLLKSINSH 1256 (1280)
Q Consensus 1226 L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1256 (1280)
|.. |-+||...||..|-.|++.+.-.++.-
T Consensus 629 Lep-l~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 629 LEP-LTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred Hhh-hhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 778 889999999999999999887555443
No 98
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.67 E-value=1.8 Score=52.88 Aligned_cols=171 Identities=17% Similarity=0.167 Sum_probs=121.1
Q ss_pred hHHHHHHHHhhhh-ccccccchHHHHHHHHHhhhCCCchh-hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch----
Q 000797 937 EVQTICLILTKSI-NRQQRFQREAAAAALSEFVRYSGGFD-SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1010 (1280)
Q Consensus 937 ~~~~il~~l~~~L-~s~~~~~R~~a~aflsEll~~~~~~~-~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---- 1010 (1280)
.+..++..+.... .+.....|..++-.++=..+.-.... ......++.|.+.+.| +.+...+.+|++-+..+
T Consensus 226 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~ 303 (415)
T PF12460_consen 226 DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV 303 (415)
T ss_pred hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh
Confidence 4666666666666 55666666666555543333211111 1123455667777777 77899999999976422
Q ss_pred ---------h---hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHH
Q 000797 1011 ---------H---IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRR 1078 (1280)
Q Consensus 1011 ---------~---v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~ 1078 (1280)
+ -.++...++|.++++..+.++.+...-+.||+.|+..+....+.+.+.+|..-+-.-++-++.++|.
T Consensus 304 l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~ 383 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLL 383 (415)
T ss_pred cCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 1 2556788999999999998877777789999999999998888888888887777778889999999
Q ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhc
Q 000797 1079 NAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1114 (1280)
Q Consensus 1079 aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1114 (1280)
++...+-.+.. ...+.+.++ .+++||-++-+
T Consensus 384 s~L~tL~~~l~----~~~~~i~~h-l~sLI~~LL~l 414 (415)
T PF12460_consen 384 SSLETLKMILE----EAPELISEH-LSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHH----cCHHHHHHH-HHHHHHHHHhc
Confidence 99999999986 224445554 45777776643
No 99
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.58 E-value=20 Score=44.24 Aligned_cols=276 Identities=10% Similarity=0.070 Sum_probs=160.9
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcchhh-hhhHhHHHHHHHhhccCCC-hHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHI-HQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v-~~~~~~lL~all~~L~d~d-~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
+-....+.|+.|.|..-.+|.+-+|.|+.-++ +..-|.++.-+...-.|.. ..+..+++.+++.+.+..+++++....
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 34455567788888888888888887765322 2233556666666666544 458899999999999998887777665
Q ss_pred HHHHHHh--ccccccCChhhHHHHHHHHHHHhhccCC-----c---------------chHHHHHHHHHhHHHHHH----
Q 000797 1059 LNLSVRL--RNLQVSMNVKMRRNAFAAFGALSNFGVG-----S---------------QREAFLEQIHAMLPRLIL---- 1112 (1280)
Q Consensus 1059 ~~l~~~l--r~~fede~~~vR~aAi~lfG~L~~~~~~-----~---------------~~~~~~eqv~~~LvpLLl---- 1112 (1280)
-.+...+ .+.=+..+..||.+|..++-+-.-|..+ . ....+..-++.+++.++.
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 4555667788999988887773322111 1 112222334444443321
Q ss_pred ----------------hccCCCHHHHHHHHHHH-Hhhchhhhh---------------------------hHHhhhccc-
Q 000797 1113 ----------------HIYDDDLSVRQACRNTL-KQVAPFMEI---------------------------GVYGIFNSH- 1147 (1280)
Q Consensus 1113 ----------------HL~D~~~~V~~ack~tL-~~~a~~L~w---------------------------~l~~l~~~~- 1147 (1280)
.++.+|.+|+-.+-.=. +.|..-..- .+-.++.+.
T Consensus 255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ 334 (858)
T COG5215 255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQG 334 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcC
Confidence 25677777775444333 222211110 111222221
Q ss_pred --CCCCCCCCChHHHHHHHHHHHHHhCcch----HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHH
Q 000797 1148 --CFNSDHRSDYETFVRDLTRQFVQHFPSR----IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ 1221 (1280)
Q Consensus 1148 --~~~~~~~l~~~~f~~~~~~~L~~~~~~~----~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~ 1221 (1280)
..+|+.+.+. ........+.+...++ +.-|+.| -++|+...=|.+|++-.|..... +.+.+.+..+.+
T Consensus 335 ed~~~DdWn~sm--aA~sCLqlfaq~~gd~i~~pVl~FvEq---ni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~q 408 (858)
T COG5215 335 EDYYGDDWNPSM--AASSCLQLFAQLKGDKIMRPVLGFVEQ---NIRSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQ 408 (858)
T ss_pred CCccccccchhh--hHHHHHHHHHHHhhhHhHHHHHHHHHH---hccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHh
Confidence 1111111110 1111112223333333 3445555 35677777888899999988754 445555666788
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHHhhhcccccccc
Q 000797 1222 VFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHSWRSTRL 1263 (1280)
Q Consensus 1222 ~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~~~~~~~ 1263 (1280)
....++. +-.||.--|...+|.++|.+-.+--...-+--|+
T Consensus 409 alp~i~n-~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl 449 (858)
T COG5215 409 ALPGIEN-EMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHL 449 (858)
T ss_pred hhHHHHH-hcccceeehhhHHHHHHHHHHHHHHHhcCccccc
Confidence 8888998 7789999999999999998875544444333333
No 100
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=17 Score=47.47 Aligned_cols=311 Identities=15% Similarity=0.166 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHhhCC--hhH-HHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhC-CCCh
Q 000797 919 WINLIGDVAGCVSIKRP--KEV-QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS-DESP 994 (1280)
Q Consensus 919 ~~~gV~lLar~l~~~~~--~~~-~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~-D~~~ 994 (1280)
....|+-|++.+.+..| .++ .=+..++.|.++|+...-|.-|.=+++.+-+--......+.+++....+.+. |++.
T Consensus 438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l 517 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL 517 (1010)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence 34445556766666555 222 2356778899999999999888777777653211122333445555555555 9999
Q ss_pred hHHHHHHhhccCCcc------hhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccc
Q 000797 995 TVRGLCLRGLVQIPS------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1068 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~------~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~ 1068 (1280)
-||.=|.-||-.+-. .+++.+.+.++..+++...+.+.++.-..| .+++..-+ +.++||-..+|..|..-
T Consensus 518 PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm---e~iV~~fs-eElsPfA~eL~q~La~~ 593 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM---EKIVCKFS-EELSPFAVELCQNLAET 593 (1010)
T ss_pred chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH---HHHHHHHH-HhhchhHHHHHHHHHHH
Confidence 999888777775532 268888899999999888776655554333 33444433 45788999999988644
Q ss_pred c-------ccCChhhHHHHHHHHHHHhh---c-cCCcchHHHHHHHHHhHHHHHHhccCCCH-HHHHHHHHH-------H
Q 000797 1069 Q-------VSMNVKMRRNAFAAFGALSN---F-GVGSQREAFLEQIHAMLPRLILHIYDDDL-SVRQACRNT-------L 1129 (1280)
Q Consensus 1069 f-------ede~~~vR~aAi~lfG~L~~---~-~~~~~~~~~~eqv~~~LvpLLlHL~D~~~-~V~~ack~t-------L 1129 (1280)
| +++++..-..|+.+.|=|-. . ..-....-...|+...+.|.+-|.-..+. ++-+.|-.- .
T Consensus 594 F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 594 FLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 3 23444444455555554433 1 11123344778888888888888554443 444433222 2
Q ss_pred Hhhchhhhh----hHHhhhcccCCCCCCCCCh-HHHHHHHHHHH------HHhCcchHHHHHHHHHhhhcC---CChhHH
Q 000797 1130 KQVAPFMEI----GVYGIFNSHCFNSDHRSDY-ETFVRDLTRQF------VQHFPSRIDSYMGSTIQAFEA---PWPIIQ 1195 (1280)
Q Consensus 1130 ~~~a~~L~w----~l~~l~~~~~~~~~~~l~~-~~f~~~~~~~L------~~~~~~~~~~~l~~~l~ylkS---~~~~IR 1195 (1280)
..+++. =| .+.++|++. +.+| .+++--+-.+. ..++|+.......-+-.-+-| ...+++
T Consensus 674 ~~Isp~-mW~ll~li~e~~~~~------~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~ 746 (1010)
T KOG1991|consen 674 KEISPI-MWGLLELILEVFQDD------GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCE 746 (1010)
T ss_pred cccCHH-HHHHHHHHHHHHhhh------hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHH
Confidence 223332 23 334455542 2332 22221111111 245666656555544444444 233444
Q ss_pred HHHHHHHHHhhccCchhhhhhcCHHHHH-HHHHHHhcc-CCChhhHHHHHH
Q 000797 1196 ANAIYFSSSILCLCDDQHILSLFYTQVF-GLLVVKLSQ-SADAIVRATCSS 1244 (1280)
Q Consensus 1196 ~aA~~fiG~l~~~~~~~~~~~~~~e~~~-~~L~~~Ll~-Dpdp~VR~~Aa~ 1244 (1280)
.|+.+++.++.++.. .+.+ ..+-.. -++.. +++ +.....|..+-+
T Consensus 747 -~a~kLle~iiL~~kg-~~dq-~iplf~~~a~~~-l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 747 -SACKLLEVIILNCKG-LLDQ-YIPLFLELALSR-LTREVETSELRVMLLE 793 (1010)
T ss_pred -HHHHHHHHHHHHhcC-cHhh-HhHHHHHHHHHH-HhccccchHHHHHHHH
Confidence 488899998877664 2111 122222 23444 444 677888876543
No 101
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=4.7 Score=51.15 Aligned_cols=164 Identities=22% Similarity=0.277 Sum_probs=113.1
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCCh
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 994 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~ 994 (1280)
.++...+|+..+.+.|.. +..+..+|.-+++.++..+-.++...=..+.-.-...++ .-.-.++.+..-..||||
T Consensus 26 ~~~kr~~a~kkvIa~Mt~--G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~---~a~~avnt~~kD~~d~np 100 (734)
T KOG1061|consen 26 SKEKRKDAVKKVIAYMTV--GKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD---LAILAVNTFLKDCEDPNP 100 (734)
T ss_pred hhhhHHHHHHHHHhcCcc--CcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCch---HHHhhhhhhhccCCCCCH
Confidence 346778888877777754 456778888888887777766665554444443333233 223367899999999999
Q ss_pred hHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCCh
Q 000797 995 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1074 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~ 1074 (1280)
.+|.+|+|-+|.+...++ ..++...|.+++.|.++-|+..|..+..++-+. +.+.... ..++..|..+..|+++
T Consensus 101 ~iR~lAlrtm~~l~v~~i---~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~~~~~~~--~gl~~~L~~ll~D~~p 174 (734)
T KOG1061|consen 101 LIRALALRTMGCLRVDKI---TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-DPDLVED--SGLVDALKDLLSDSNP 174 (734)
T ss_pred HHHHHHhhceeeEeehHH---HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC-Chhhccc--cchhHHHHHHhcCCCc
Confidence 999999999999987765 345678899999998888888888887776542 2222211 1223344555557777
Q ss_pred hhHHHHHHHHHHHhh
Q 000797 1075 KMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~ 1089 (1280)
.|=+.|..++..+..
T Consensus 175 ~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 175 MVVANALAALSEIHE 189 (734)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777777777777765
No 102
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=39 Score=44.81 Aligned_cols=390 Identities=16% Similarity=0.137 Sum_probs=197.9
Q ss_pred hhHHHHHHHHhccc-------------cHHHHHHHhhhC--hhhHHHHHHHHHHHHccCCCCCCCccCCCCCCCCCCCcc
Q 000797 763 DIVTKDISRLRGGW-------------PMQDAFHAFSQH--AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWI 827 (1280)
Q Consensus 763 e~V~eil~~i~~~l-------------~~~~ai~~La~h--~~l~~~~l~~ll~~L~~~p~~~~~~~~~~~~~~~~~~~~ 827 (1280)
|.|++|++.+..++ ++-|.+--++++ ++++..+++.+++.. .|...+..|
T Consensus 333 edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~--~p~e~~~aW------------- 397 (1133)
T KOG1943|consen 333 EDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLF--NPAEDDSAW------------- 397 (1133)
T ss_pred cccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhc--CcCCchhHH-------------
Confidence 45888887776664 345556556655 678888888888833 222211111
Q ss_pred cchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHHhhhcccCCC--CC--CChHHHHHHHHHHHHHhhcchHH
Q 000797 828 DDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS--GQ--HEPLRAILTSFQAFCECVGDLEM 903 (1280)
Q Consensus 828 ~~~~~laAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~--~~--~~P~~~~l~Alk~ll~~~~~~~~ 903 (1280)
-.|.-||.|+=..+ - -.-..++.+.-.++.-+||-...+.- |. -+...++.+|| .++-.-..
T Consensus 398 -----HgacLaLAELA~rG--l---Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf----~Rays~~~ 463 (1133)
T KOG1943|consen 398 -----HGACLALAELALRG--L---LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAF----ARAYSPSD 463 (1133)
T ss_pred -----HHHHHHHHHHHhcC--C---cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH----HhcCChhh
Confidence 25666777765554 2 22234556666666677775555321 21 12223344443 11111000
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCC----Cch-----
Q 000797 904 RKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS----GGF----- 974 (1280)
Q Consensus 904 ~~~l~~~~~w~~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~----~~~----- 974 (1280)
-.+ -++-|+.++.. ..+=.++-.-|.+|.|+|-|.+.-. -+.
T Consensus 464 ------------l~p---~l~~L~s~LL~--------------~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~ 514 (1133)
T KOG1943|consen 464 ------------LKP---VLQSLASALLI--------------VALFDREVNCRRAASAALQENVGRQGNFPHGISLIST 514 (1133)
T ss_pred ------------hhH---HHHHHHHHHHH--------------HHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhh
Confidence 011 11223333322 1222455566778888888876531 010
Q ss_pred -----------------------hhHHHHHHHHHHhh-hCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCC
Q 000797 975 -----------------------DSLLEQMVEALCRH-VSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDL 1030 (1280)
Q Consensus 975 -----------------------~~l~~~~i~~L~~~-l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~ 1030 (1280)
....+.+++.|... +.+=++.+|.++...|.++..-..+......++-+++..+.+
T Consensus 515 ~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 515 IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSK 594 (1133)
T ss_pred cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCC
Confidence 11123455555554 677788999999999998765544444557888999998888
Q ss_pred ChHHHHHHHHHHHHHhccCCcccchhhhH-----HHHHH---hccccccC--C---hhhHHHHHHHHHHHhhccCCcchH
Q 000797 1031 DESVQLTAVSCLLTILKSSSKDAVEPILL-----NLSVR---LRNLQVSM--N---VKMRRNAFAAFGALSNFGVGSQRE 1097 (1280)
Q Consensus 1031 d~~V~~ea~~~L~~ll~~l~~~~~~~~l~-----~l~~~---lr~~fede--~---~~vR~aAi~lfG~L~~~~~~~~~~ 1097 (1280)
|...+.....+.+.++...-. ++++.. .|+-. +-|++++- + .-+|.+--...-.+.. ....
T Consensus 595 ~~~~r~g~~la~~ev~~~~~~--l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~----s~~~ 668 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALRK--LEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSL----SKDR 668 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhhh--hhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhh----ccch
Confidence 877777777777776644321 111111 11111 22332221 0 1122221111111111 0111
Q ss_pred HHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchH
Q 000797 1098 AFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRI 1176 (1280)
Q Consensus 1098 ~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~ 1176 (1280)
.+.+-+...+--++. .+.++| .++.++..+++ ++|.-......+..
T Consensus 669 ~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~--------------------------------~l~s~y~~~d~~~~ 715 (1133)
T KOG1943|consen 669 LFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVS--------------------------------DLVSTYVKADEGEE 715 (1133)
T ss_pred hHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHH--------------------------------HHHHHHHhcCchhh
Confidence 111222222222222 123333 44444444433 34444444444444
Q ss_pred HHHHHHHHhhhcCC-ChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHh
Q 000797 1177 DSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1177 ~~~l~~~l~ylkS~-~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1253 (1280)
...+.+.+.+..++ ...+|+.-.+..| .++.+.+..-..+.+++++....-.|-.+.-|.....|+....+..
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~----~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~ 789 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALG----VLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTV 789 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHc----cCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHH
Confidence 45666677777777 7788885444333 4454555444567777776663334556777777777776665543
No 103
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.13 E-value=2.1 Score=55.54 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=149.4
Q ss_pred HHHHHHhcC-CcchHHHHHHhhHHHHHHHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCch
Q 000797 838 ALTAFFRGG-GKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDK 916 (1280)
Q Consensus 838 aL~Ell~~~-~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~~l~Alk~ll~~~~~~~~~~~l~~~~~w~~~ 916 (1280)
-|-+++..+ +-+++.. ..||.+=+.|+=+-+-|=.+.+.|-+.-| + .||.||..+
T Consensus 430 qlp~~ild~~~~~f~~~-s~FFteQLTAFevWLd~gse~r~PPeQLP--i---VLQVLLSQv------------------ 485 (1387)
T KOG1517|consen 430 QLPQLILDAESTDFRHV-SPFFTEQLTAFEVWLDYGSESRTPPEQLP--I---VLQVLLSQV------------------ 485 (1387)
T ss_pred HhHHHHhccCccccccC-CchHHHHHHHHHHHHHhccccCCChHhcc--h---HHHHHHHHH------------------
Confidence 344334443 2344442 36888888888666666555554423334 2 355666443
Q ss_pred hhHHHHHHHHHHHHHhhCCh-----hHHHHHHHHhhhhccccccchHHHHHHHHHhhhC-CCchhhHHHH-HHHHHHhhh
Q 000797 917 EKWINLIGDVAGCVSIKRPK-----EVQTICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLEQ-MVEALCRHV 989 (1280)
Q Consensus 917 ~~~~~gV~lLar~l~~~~~~-----~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~-~~~~~~l~~~-~i~~L~~~l 989 (1280)
.-..++.+|+|-|-- -|| .-.+||-++.++|+|+-..-|..=+=+-+..|.= +.....+++. .-....+-|
T Consensus 486 -HRlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 486 -HRLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred -HHHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 123344445554321 111 2346777777777777665554433333333320 0001111111 001111111
Q ss_pred CC---CChhHHHHHHhhccCCcch----hhhhhHhHHHHHHHhhccCC-ChHHHHHHHHHHHHHhccCCcccchhhhHHH
Q 000797 990 SD---ESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNL 1061 (1280)
Q Consensus 990 ~D---~~~~VR~laLrGLg~l~~~----~v~~~~~~lL~all~~L~d~-d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l 1061 (1280)
.| =++.=|.+|.=-|+.+..+ +-.-+...++.-|++.|.|. +.-...=.+.+|++|-+.-+.....-.-.+-
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 22 1345566766666655432 33445567777888888774 3344555677778776544332222222233
Q ss_pred HHHhccccccCChhhHHHHHHHHHHHhhcc-----CCcc-----------hHHHHHHHHHhHHHHHHhccCCCHHHHHHH
Q 000797 1062 SVRLRNLQVSMNVKMRRNAFAAFGALSNFG-----VGSQ-----------REAFLEQIHAMLPRLILHIYDDDLSVRQAC 1125 (1280)
Q Consensus 1062 ~~~lr~~fede~~~vR~aAi~lfG~L~~~~-----~~~~-----------~~~~~eqv~~~LvpLLlHL~D~~~~V~~ac 1125 (1280)
..+|-..+.|+-++||+||+.++|.+...+ .... +....+++.+++.+++--++|..+-||++.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 455667888999999999999999998732 1100 011334456677889999999999999998
Q ss_pred HHHHHhhch
Q 000797 1126 RNTLKQVAP 1134 (1280)
Q Consensus 1126 k~tL~~~a~ 1134 (1280)
.-+|.+.+.
T Consensus 724 ~v~ls~~~~ 732 (1387)
T KOG1517|consen 724 VVALSHFVV 732 (1387)
T ss_pred HHHHHHHHH
Confidence 888888764
No 104
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=1.8 Score=57.00 Aligned_cols=205 Identities=16% Similarity=0.099 Sum_probs=143.2
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc-hhhH-HHHHHHHHHhhhCCCChhHHHHHHhhccCCcch----
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSL-LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1010 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~~~l-~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---- 1010 (1280)
++.-|++.+.+..++....-|..+...+..++...+. .-.+ .+.+-+++... +|.|..-|+.+..-|-.|+..
T Consensus 694 ~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~ 772 (1176)
T KOG1248|consen 694 RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSL 772 (1176)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhh
Confidence 7888899999999999888888888888888887653 2223 33345555555 999999999988877776611
Q ss_pred -hh----hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHH
Q 000797 1011 -HI----HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFG 1085 (1280)
Q Consensus 1011 -~v----~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG 1085 (1280)
.. ..-....++-+..|+-.....++...+.++..++..-..-.-..++..+...+.-++...+.++|.+||+..-
T Consensus 773 d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 773 DDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIK 852 (1176)
T ss_pred cccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 1122233444455543323345555588888888765555555777788888888999999999999999998
Q ss_pred HHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhc
Q 000797 1086 ALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN 1145 (1280)
Q Consensus 1086 ~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~ 1145 (1280)
-+...-......++.++++.++ +.-++|-...|+.+.|.=|.++..-.|. .++.++.
T Consensus 853 vlv~~~pe~~l~~~~~~LL~sl---l~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 853 VLVYKFPEECLSPHLEELLPSL---LALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHcCCHHHHhhhHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 8886333334444555544333 3345677999999999999998888787 7777765
No 105
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=4.8 Score=50.32 Aligned_cols=142 Identities=22% Similarity=0.228 Sum_probs=100.4
Q ss_pred HhhhhccccccchHHHHHHHHHhhh--CCCch----hhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hh--hh
Q 000797 945 LTKSINRQQRFQREAAAAALSEFVR--YSGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI--HQ 1014 (1280)
Q Consensus 945 l~~~L~s~~~~~R~~a~aflsEll~--~~~~~----~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v--~~ 1014 (1280)
++..|+-++..-|.-|+-.|.++-. .|... ...++.=...|...|.||.|.||.-|+.|+..+... .+ ..
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3467778888888888888888764 33331 233444455678889999999999999999877643 11 00
Q ss_pred hHhHHHHHHHhhcc-CCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1015 YATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1015 ~~~~lL~all~~L~-d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
-...+|.-+.+-+- |+..+|++....+|..++.. ....+.+..+..++++.+-|.+..||.|+..++-.+-.
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 11222333333322 12367999999999999865 34457777888899999999999999999999887754
No 106
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.81 E-value=1.8 Score=49.33 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=118.0
Q ss_pred HHHhhhhccccccchHHHHHHHHHhhhCCCc---hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhh--hhhHh
Q 000797 943 LILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI--HQYAT 1017 (1280)
Q Consensus 943 ~~l~~~L~s~~~~~R~~a~aflsEll~~~~~---~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v--~~~~~ 1017 (1280)
+.|.++|+|.++..|.-|+-++++.+..-+. .....+.++..+.+++.|. +.+... ++|+..+...+. .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 4578999999999999999999999987442 3444566889999999655 445555 888887763211 11234
Q ss_pred HHHHHHHhhccCCC--hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCC-hhhHHHHHHHHHHHhhccCCc
Q 000797 1018 QVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-VKMRRNAFAAFGALSNFGVGS 1094 (1280)
Q Consensus 1018 ~lL~all~~L~d~d--~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~-~~vR~aAi~lfG~L~~~~~~~ 1094 (1280)
.++..+.+..+-.. ...+......|..+++.-. ..+..+-......+....+.|+ |.-=.-+|.++-.+.+.-
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~--- 155 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF--- 155 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc---
Confidence 55555555433221 3577888888888876521 1122222233334445666665 455556777777776521
Q ss_pred chHHHHHHHHHhH---HHHHHhccCCCH------HHHHHHHHHHHhhchhhhhhHHhhhccc
Q 000797 1095 QREAFLEQIHAML---PRLILHIYDDDL------SVRQACRNTLKQVAPFMEIGVYGIFNSH 1147 (1280)
Q Consensus 1095 ~~~~~~eqv~~~L---vpLLlHL~D~~~------~V~~ack~tL~~~a~~L~w~l~~l~~~~ 1147 (1280)
....+.|+++..+ -|.-++=.-.+| +.+.+.+.+|.....|-.+-+.-+++|.
T Consensus 156 ~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL 217 (262)
T PF14500_consen 156 DISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKL 217 (262)
T ss_pred ccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHH
Confidence 1245556655444 344444322232 5666666666644444344666666663
No 107
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.76 E-value=1.6 Score=56.14 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-----------------hhhhhHhHHHHHHHhhccCCChHHHHHHH
Q 000797 977 LLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----------------HIHQYATQVLSVILALLDDLDESVQLTAV 1039 (1280)
Q Consensus 977 l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-----------------~v~~~~~~lL~all~~L~d~d~~V~~ea~ 1039 (1280)
+++.+...+.......++.+|..|+-++|.+... -..++.+.+...+-.+.+..|++.++-++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 3344333333333346788999999999987532 12456666666666666667788889999
Q ss_pred HHHHHHhccCCcccchhhhHHHHHHhccccccC---ChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccC
Q 000797 1040 SCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD 1116 (1280)
Q Consensus 1040 ~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede---~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D 1116 (1280)
.||+++... .....+.|+..++ ...+|.+|+.+|..++.. .-+.+...+.|++.. ..
T Consensus 512 kaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~~~v~~~l~~I~~n-~~ 571 (618)
T PF01347_consen 512 KALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CPEKVREILLPIFMN-TT 571 (618)
T ss_dssp HHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH--TT
T ss_pred HHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------CcHHHHHHHHHHhcC-CC
Confidence 999998742 2334455666665 789999999999987541 235677788887665 45
Q ss_pred CCHHHHHHHHHHHHhhchhhhh--hHHhhh
Q 000797 1117 DDLSVRQACRNTLKQVAPFMEI--GVYGIF 1144 (1280)
Q Consensus 1117 ~~~~V~~ack~tL~~~a~~L~w--~l~~l~ 1144 (1280)
++++||-||-..|.+|-|-..+ .+....
T Consensus 572 e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 572 EDPEVRIAAYLILMRCNPSPSVLQRIAQSL 601 (618)
T ss_dssp S-HHHHHHHHHHHHHT---HHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6889999999999999776555 444443
No 108
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.68 E-value=31 Score=42.20 Aligned_cols=291 Identities=14% Similarity=0.098 Sum_probs=158.2
Q ss_pred HHHhhhhccccccchHHHHHHHHHhhhCCCc--hhhHHHHHHHHHHhhhCCC-ChhHHHHHHhhccCCcch-hhhhh--H
Q 000797 943 LILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-HIHQY--A 1016 (1280)
Q Consensus 943 ~~l~~~L~s~~~~~R~~a~aflsEll~~~~~--~~~l~~~~i~~L~~~l~D~-~~~VR~laLrGLg~l~~~-~v~~~--~ 1016 (1280)
..+.++|++++..=-..|.-+++-++..... .....+...+.|...++.+ +....-.++++|+++... ..+.. .
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~ 183 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL 183 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444566777666667777778888764322 1222334455566666543 355666777888887643 11110 1
Q ss_pred hHHHHHHHhhccCCC--hHHHHHHHHHHHHH------hccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHh
Q 000797 1017 TQVLSVILALLDDLD--ESVQLTAVSCLLTI------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1088 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d--~~V~~ea~~~L~~l------l~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~ 1088 (1280)
...++.+.+.|.... -....+++.++=-+ .+.+...++-+.+.+++. +...++|=..++..|-.+.
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k------~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILK------ESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHH------hhhhHHHHHHHHHHHHHHh
Confidence 123555555554422 23444444433222 222222222222333222 2235677777888888887
Q ss_pred hccCCcc-hHHHHHHHHH-hHHHHHHhccCC---CHHHHH---HHHHHHHhhch-hhhh--hHHhhhcccC-CCCCCCCC
Q 000797 1089 NFGVGSQ-REAFLEQIHA-MLPRLILHIYDD---DLSVRQ---ACRNTLKQVAP-FMEI--GVYGIFNSHC-FNSDHRSD 1156 (1280)
Q Consensus 1089 ~~~~~~~-~~~~~eqv~~-~LvpLLlHL~D~---~~~V~~---ack~tL~~~a~-~L~w--~l~~l~~~~~-~~~~~~l~ 1156 (1280)
....... ...+...+.. .+++++-.|+.. |+++.. .-...|..--. +-.| =..++...+. |.. .|
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp---~H 334 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP---VH 334 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC---CC
Confidence 6322111 2234344443 666666655432 334442 22333333322 2224 3334555442 432 33
Q ss_pred -hHHHHHHHHHHHHHhCcchHHHHHHHHHhhh-cCCChhHHHHHHHHHHHhhccCc--hhhhhhcCHHHHHHHHHHHhcc
Q 000797 1157 -YETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQVFGLLVVKLSQ 1232 (1280)
Q Consensus 1157 -~~~f~~~~~~~L~~~~~~~~~~~l~~~l~yl-kS~~~~IR~aA~~fiG~l~~~~~--~~~~~~~~~e~~~~~L~~~Ll~ 1232 (1280)
-+.|+++=...|.+++ ...+...+.++ +|..+.+=+-|+.=||.+++++| ...+..++.. ...+. |..
T Consensus 335 ~se~FW~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K---~~vM~-Lm~ 406 (429)
T cd00256 335 KSEKFWRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGK---QRVMR-LLN 406 (429)
T ss_pred CCchHHHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcH---HHHHH-Hhc
Confidence 3678888777776554 33455556666 46677788888888999999987 3444444433 34555 788
Q ss_pred CCChhhHHHHHHHHHHHH
Q 000797 1233 SADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1233 Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+|||.||..|-.|.+.+.
T Consensus 407 h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 407 HEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999987763
No 109
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=0.99 Score=58.27 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhccCCcccch-hhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH
Q 000797 1034 VQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1112 (1280)
Q Consensus 1034 V~~ea~~~L~~ll~~l~~~~~~-~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl 1112 (1280)
-++.|+.-|++.|+.=.| .+. +..+-|-.-...++...-.++|-.=+.....+.+.-..-+.+-++|-.+...+..+-
T Consensus 486 HRlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 468888889998875333 322 233333333344577788899999999999998754333334455544444433321
Q ss_pred hccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCC-C
Q 000797 1113 HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP-W 1191 (1280)
Q Consensus 1113 HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~-~ 1191 (1280)
--+--+++-|..|.+.|..+..-..-.-++.++ + -++.-|+..+.|+ .
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~---------------------------~----~li~iCle~lnd~~~ 613 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN---------------------------G----NLIGICLEHLNDDPE 613 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc---------------------------c----cHHHHHHHHhcCCcc
Confidence 112235677888888877655421111011111 1 1344466677774 6
Q ss_pred hhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1192 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1192 ~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
+=+|++.++-+|.+-++++...+.-.. .-..+-|.. +++||-|.||++|.-|||.|...
T Consensus 614 pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~-~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 614 PLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLIL-LLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHH-HhcCccHHHHHHHHHHHHHHhcc
Confidence 779999999999999988866653221 123445666 89999999999999999988754
No 110
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.31 E-value=0.58 Score=44.58 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=58.1
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1180 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1180 l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
+..++.++.||.++||+.|...+..++..-+ ....+.+.+...+.. .++|+||.|=-.|.++|.-|...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999997655 223456788888888 89999999999999999888743
No 111
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.96 E-value=66 Score=44.35 Aligned_cols=308 Identities=13% Similarity=0.100 Sum_probs=169.5
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHH-HHHHHHhhhhccc----cccchHHHHHHHHHhhhCCC--chhhHHHHHHHHHHh
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQ----QRFQREAAAAALSEFVRYSG--GFDSLLEQMVEALCR 987 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~-~il~~l~~~L~s~----~~~~R~~a~aflsEll~~~~--~~~~l~~~~i~~L~~ 987 (1280)
+......-+..|+ ..+.-+|..+. .=+..+.|||++. .+.+=+-.++++-|.+=.-. -.+..+..+=..|..
T Consensus 1050 ~~~~~~~~lstL~-~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~ 1128 (1692)
T KOG1020|consen 1050 SEVRLLAYLSTLF-VFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLK 1128 (1692)
T ss_pred chhHHHHHHHHHH-HHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 5556666666555 55666776544 7778899999998 55555666666665332110 123445555556666
Q ss_pred hhCCCChhHHHHHHhhccCCcch--hhhhhHhHHHHHHHhhccCC-----------ChHHHHHHHHHHHHHhccCC----
Q 000797 988 HVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDL-----------DESVQLTAVSCLLTILKSSS---- 1050 (1280)
Q Consensus 988 ~l~D~~~~VR~laLrGLg~l~~~--~v~~~~~~lL~all~~L~d~-----------d~~V~~ea~~~L~~ll~~l~---- 1050 (1280)
.+---+..+-.-|.-.+|.++.+ +..+....+..+++..|+.. ..+....++-.++-+.++-+
T Consensus 1129 ~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~ 1208 (1692)
T KOG1020|consen 1129 RIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKP 1208 (1692)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 66555555556666677777653 33333445555555555441 12344555555555544211
Q ss_pred ---ccc----chhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHH-HHHHHhHHHHHHhccCCCHHHH
Q 000797 1051 ---KDA----VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL-EQIHAMLPRLILHIYDDDLSVR 1122 (1280)
Q Consensus 1051 ---~~~----~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~-eqv~~~LvpLLlHL~D~~~~V~ 1122 (1280)
+.+ .....-.+..-+.-|--+.+..+|.-|+..+|.++. . ...-|. .++.+.+-- -|+|++.++.
T Consensus 1209 ~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci---~-hp~l~~~~~v~nly~~---ila~~n~~~~ 1281 (1692)
T KOG1020|consen 1209 SNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICI---Q-HPSLFTSREVLNLYDE---ILADDNSDIK 1281 (1692)
T ss_pred cCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---h-CchhhhhHHHHHHHHH---HHhhhcccHH
Confidence 111 112222333333344445779999999999999874 1 122233 333333222 2456655544
Q ss_pred HHHHHHHHhhchhh------------hh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcC
Q 000797 1123 QACRNTLKQVAPFM------------EI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA 1189 (1280)
Q Consensus 1123 ~ack~tL~~~a~~L------------~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS 1189 (1280)
.. -..|...-.+| +| ..+..-+.. +-...+-+.+.++.|..++| .|+.+.+.-+=+
T Consensus 1282 ~k-i~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlk---em~~v~sg~~s~~~~~~i~Q-------lfl~~ILe~cl~ 1350 (1692)
T KOG1020|consen 1282 SK-IQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLK---EMLDVSSGMGSSDGVSAIMQ-------LFLDNILESCLD 1350 (1692)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHH---hhcccccccccccchHHHHH-------HHHHHHHHHHhc
Confidence 10 01111111111 22 111111110 00112335566666766665 467777776667
Q ss_pred CChhHHHHHHHHHHHhhc--cCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1190 PWPIIQANAIYFSSSILC--LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1190 ~~~~IR~aA~~fiG~l~~--~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
-+-.+|.+|+..+-.+++ ...+-+ -+..|+. |-.||.+..|..|-+-|..+.
T Consensus 1351 ~d~~~r~~aikvl~liL~QGLVhP~~--------cvPtLIA-L~Tdp~~~~r~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1351 RDLQVRLVAIKVLKLILNQGLVHPVH--------CVPTLIA-LETDPSQAIRHVADELLKEID 1404 (1692)
T ss_pred cchHHHHHHHHHHHHHHHccCCCccc--------hhhhhee-ecCChHHHHHHHHHHHHHHHH
Confidence 788899999999988875 233333 3567887 888999888888887777665
No 112
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=8.4 Score=49.02 Aligned_cols=284 Identities=17% Similarity=0.193 Sum_probs=167.4
Q ss_pred ChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchh---
Q 000797 935 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIH--- 1011 (1280)
Q Consensus 935 ~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~--- 1011 (1280)
+....-++.-+...+++.+..-|.+|+.-...+-.-.+. ......+++.|...+.|++|.|-.-|+.+|..+...+
T Consensus 116 ~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 116 DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 346677788888899999999998888777766543322 1111235677888888999999999999999886431
Q ss_pred -hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhc
Q 000797 1012 -IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1090 (1280)
Q Consensus 1012 -v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~ 1090 (1280)
.-...++++.-++..+. +-.-+.-+..|..+......+.. =...++.++.|.+.+-++.|-.+|.-+|=.+.++
T Consensus 195 ~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~--ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSR--EAEDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred CcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCch--hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 22233445555555553 33446666677777777666652 2457889999999998888888888777666542
Q ss_pred cCC----------------------cchHHHH--HHHH------------------------------------------
Q 000797 1091 GVG----------------------SQREAFL--EQIH------------------------------------------ 1104 (1280)
Q Consensus 1091 ~~~----------------------~~~~~~~--eqv~------------------------------------------ 1104 (1280)
... .+...++ ..+.
T Consensus 270 ~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~ 349 (734)
T KOG1061|consen 270 LKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLA 349 (734)
T ss_pred HHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHH
Confidence 110 0000000 0011
Q ss_pred HhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh------hHHhhhcccCCCCCCCCCh--HHHHHHHHHHHHHhCcchH
Q 000797 1105 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI------GVYGIFNSHCFNSDHRSDY--ETFVRDLTRQFVQHFPSRI 1176 (1280)
Q Consensus 1105 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w------~l~~l~~~~~~~~~~~l~~--~~f~~~~~~~L~~~~~~~~ 1176 (1280)
+.+.-|...-.|.+++.++++-+|+++||.-..- .+-++++.. .+| .|.+ -..+-+..++|+..
T Consensus 350 qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~-------~~yvvqE~~-vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 350 QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETK-------VDYVVQEAI-VVIRDILRKYPNKY 421 (734)
T ss_pred HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhc-------ccceeeehh-HHHHhhhhcCCCch
Confidence 1111111122355666667888888888854322 122222211 112 1111 22344567788887
Q ss_pred HHHHHHHHhhhcCCC-hhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHH
Q 000797 1177 DSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRA 1240 (1280)
Q Consensus 1177 ~~~l~~~l~ylkS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~ 1240 (1280)
...+...-.-++|=+ |+.|++=+|.+|.-...+++ ...+++.+++ =-+|+.+.|+-
T Consensus 422 ~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-------a~elL~~f~e-n~~dE~~~Vql 478 (734)
T KOG1061|consen 422 ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-------ALELLESFLE-NFKDETAEVQL 478 (734)
T ss_pred hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-------HHHHHHHHHh-hcccchHHHHH
Confidence 666655444444433 56899999999998876552 2334444444 24455566664
No 113
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.51 E-value=1.5 Score=50.35 Aligned_cols=260 Identities=17% Similarity=0.150 Sum_probs=140.2
Q ss_pred ccccccchHHHHHHHHHhhhC---CCchhhHHHH-HHHHHHhhh-CCCChhHHHHHHhhccCCcch-----hhhhhHhHH
Q 000797 950 NRQQRFQREAAAAALSEFVRY---SGGFDSLLEQ-MVEALCRHV-SDESPTVRGLCLRGLVQIPSI-----HIHQYATQV 1019 (1280)
Q Consensus 950 ~s~~~~~R~~a~aflsEll~~---~~~~~~l~~~-~i~~L~~~l-~D~~~~VR~laLrGLg~l~~~-----~v~~~~~~l 1019 (1280)
.|.+-.+.+-|+.=|-.+|.. |+- ..+++. +++.+.+.+ ........--|.=+|.|++++ +|--. ...
T Consensus 81 ~SdDie~q~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~A 158 (526)
T COG5064 81 FSDDIEQQLQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGA 158 (526)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCc
Confidence 344444455555555555542 221 222222 344444444 222333333455577788765 22111 345
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHH--HHHHhccccccCCh--hhHHHHHHHHHHHhhccCCcc
Q 000797 1020 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQVSMNV--KMRRNAFAAFGALSNFGVGSQ 1095 (1280)
Q Consensus 1020 L~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~--l~~~lr~~fede~~--~vR~aAi~lfG~L~~~~~~~~ 1095 (1280)
+|.++..|.+.+.+|.-.|+.+|++|-.. ..+.+.+.++ ....+..+|..... ++=..|-=.+..++ +|+.
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc---RGkn 233 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC---RGKN 233 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh---CCCC
Confidence 78899999999999999999999999753 2333333322 11222233443333 23333444455555 4666
Q ss_pred hHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000797 1096 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1175 (1280)
Q Consensus 1096 ~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~ 1175 (1280)
..|=-.-+.++++-|---+.-.+++|..-+..|+.-+. +|. ...+-..+-.-.|.+
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls-----------------Dg~-------~E~i~avld~g~~~R 289 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS-----------------DGP-------NEKIQAVLDVGIPGR 289 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc-----------------cCc-------HHHHHHHHhcCCcHH
Confidence 66644444455444433445556676665555555432 221 001111222223444
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1176 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1176 ~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
.+..+-+|...|..-|...+|-++--.++|--.-++ --..++|.. |+..|-..+|+-|-.|++.+
T Consensus 290 -------LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~-lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 290 -------LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRS-LLSSPKENIRKEACWTISNI 354 (526)
T ss_pred -------HHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHH-HhcChhhhhhhhhheeeccc
Confidence 344555677888888888899888655544322222 225677888 78889889999887776553
No 114
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.36 E-value=2.6 Score=53.72 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=92.7
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcch-h----------hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-H----------IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1047 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~----------v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~ 1047 (1280)
+.+...+.....-+++.+|..|+-++|++... . +..+.+.+..-+-.+.++.|++.+.-.+.||+++..
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 33333333333345788999999999988642 1 234444444444455555667778888888888765
Q ss_pred cCCcccchhhhHHHHHHhccccc-c--CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHH
Q 000797 1048 SSSKDAVEPILLNLSVRLRNLQV-S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQA 1124 (1280)
Q Consensus 1048 ~l~~~~~~~~l~~l~~~lr~~fe-d--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~a 1124 (1280)
... ...+.|+.. + -...+|.+|+.+|..++.... +.+...+.|+.. =.+++++||.+
T Consensus 476 ~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~-n~~e~~EvRia 535 (574)
T smart00638 476 PSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIYL-NRAEPPEVRMA 535 (574)
T ss_pred hhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHc-CCCCChHHHHH
Confidence 321 222334443 3 356899999999998875221 345556666553 45788999999
Q ss_pred HHHHHHhhchhhhh--hHHhhh
Q 000797 1125 CRNTLKQVAPFMEI--GVYGIF 1144 (1280)
Q Consensus 1125 ck~tL~~~a~~L~w--~l~~l~ 1144 (1280)
|-..|.+|-|-..+ .+....
T Consensus 536 A~~~lm~t~P~~~~l~~ia~~l 557 (574)
T smart00638 536 AVLVLMETKPSVALLQRIAELL 557 (574)
T ss_pred HHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999665544 444443
No 115
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.17 E-value=19 Score=45.28 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=82.1
Q ss_pred ccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCC
Q 000797 952 QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD 1031 (1280)
Q Consensus 952 ~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d 1031 (1280)
+....+..|.-|+..+..+.+. +-+..++.+.....|++..||+.|+|||..+..+. ..+.+.+...+...|...|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~---l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD---LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG---GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhccc
Confidence 4566777788899998887655 44778899999999999999999999999998641 2344556666666666444
Q ss_pred hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHH-HHHhhccCCcchHHHHHHHHHhHHHH
Q 000797 1032 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAF-GALSNFGVGSQREAFLEQIHAMLPRL 1110 (1280)
Q Consensus 1032 ~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lf-G~L~~~~~~~~~~~~~eqv~~~LvpL 1110 (1280)
...+-..=.+|..++..=....++.++ .+|.+- ..+++.+|.-++..+ ..+..... ......+++-..++-.
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~~lf----~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~--~~~~p~~E~e~~i~~~ 182 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLTGLF----SQIESS-KSGDEQVRERALKFLREKLKPLKP--ELLTPQKEMEEFIVDE 182 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHH----HS-HHHHHHHHHHHHHHGGGS-T--TTS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHH----HHHHhc-ccCchHHHHHHHHHHHHHHhhCcH--HHhhchHHHHHHHHHH
Confidence 332222333444444321122333333 333321 245678999988655 44443221 1112224444444444
Q ss_pred HHh-ccC
Q 000797 1111 ILH-IYD 1116 (1280)
Q Consensus 1111 LlH-L~D 1116 (1280)
+.- |+|
T Consensus 183 ikkvL~D 189 (556)
T PF05918_consen 183 IKKVLQD 189 (556)
T ss_dssp HHHHCTT
T ss_pred HHHHHHh
Confidence 442 455
No 116
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=59 Score=41.89 Aligned_cols=250 Identities=17% Similarity=0.163 Sum_probs=120.8
Q ss_pred HHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhH
Q 000797 980 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1059 (1280)
Q Consensus 980 ~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~ 1059 (1280)
+..+.+..|+.+-...|--=|.|.+.++...-.+...+ .+.++--.++....-.+-.|+..|.++--.-... +...
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~-v~~c-- 320 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA-VTVC-- 320 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc-cccc--
Confidence 34566777777666666666666666665432333333 2333333333334445567777777765432211 1111
Q ss_pred HHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhh
Q 000797 1060 NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIG 1139 (1280)
Q Consensus 1060 ~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~ 1139 (1280)
..-+-++..|.|-.+-.-||. .+.+-|..+..+.+.+|+ ..++--+.|+..-|+-.+-.+|+..-|..+..
T Consensus 321 --N~elE~lItd~NrsIat~AIT---tLLKTG~e~sv~rLm~qI----~~fv~disDeFKivvvdai~sLc~~fp~k~~~ 391 (865)
T KOG1078|consen 321 --NLDLESLITDSNRSIATLAIT---TLLKTGTESSVDRLMKQI----SSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV 391 (865)
T ss_pred --chhHHhhhcccccchhHHHHH---HHHHhcchhHHHHHHHHH----HHHHHhccccceEEeHHHHHHHHhhccHHHHH
Confidence 112345555555444444443 344434445555555553 33444577777777777777777766654442
Q ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcC------------------------------
Q 000797 1140 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA------------------------------ 1189 (1280)
Q Consensus 1140 l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS------------------------------ 1189 (1280)
+-..+.+-.-++| ++.|-..+-|...-.++.+|+.=..-+...-.|+.|
T Consensus 392 ~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 392 MMNFLSNMLREEG-GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 2222222212222 444422222222223333333322222222223322
Q ss_pred -------CChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1190 -------PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1190 -------~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
....+|++|+..+-.+... ++- -.+.+...|.+ -+.|+|-.||.+|+-+|..+.
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~--~~~----l~~sI~vllkR-c~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQ--DVV----LLPSILVLLKR-CLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcC--CCC----ccccHHHHHHH-HhcCchHHHHHHHHHHHHHhh
Confidence 2334566666555444411 111 12335555666 677888888888888887776
No 117
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.68 E-value=1 Score=50.29 Aligned_cols=93 Identities=23% Similarity=0.313 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
+..++.|.+++.|+++..|+-+.--+|++-. +..+|.+.+.|.|
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d----------------------------- 229 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLD----------------------------- 229 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHh-----------------------------
Confidence 4456777788888888888777777777764 4445555555433
Q ss_pred HHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 000797 1059 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1132 (1280)
Q Consensus 1059 ~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1132 (1280)
+.|.+-||.-|..++|.++. .+ ++.-|--++.|+++-|++.|-.+|-.+
T Consensus 230 -----------~~E~pMVRhEaAeALGaIa~---e~-----------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 -----------ETEHPMVRHEAAEALGAIAD---ED-----------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -----------hhcchHHHHHHHHHHHhhcC---HH-----------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34667788888888888774 11 233334468888888888888888663
No 118
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=6.2 Score=50.15 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=92.6
Q ss_pred CCCchhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCC
Q 000797 912 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSD 991 (1280)
Q Consensus 912 ~w~~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D 991 (1280)
+..++-.+..+|+-.++.+ ...+...-+++.++-.-+++..+.--.=|+-..+.|=+.... .+...+.+|.-.+.-
T Consensus 218 ~~~~~~A~~~lir~~~~~l-~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~pavs~Lq~flss 293 (865)
T KOG1078|consen 218 SLKSPLAVCMLIRIASELL-KENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAPAVSVLQLFLSS 293 (865)
T ss_pred cccchhHHHHHHHHHHHHh-hhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcchHHHHHHHHhcC
Confidence 3336666777777444444 444555666666666666655544443344444443222211 112267778888899
Q ss_pred CChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhc----cCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcc
Q 000797 992 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALL----DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1067 (1280)
Q Consensus 992 ~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L----~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~ 1067 (1280)
|.+..|-.|+|-|-.+|.. +|+.+.++=.-| .|.+..|..-|+..|-+-.. ..-...+..++-.
T Consensus 294 p~~~lRfaAvRtLnkvAm~-----~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~-------e~sv~rLm~qI~~ 361 (865)
T KOG1078|consen 294 PKVALRFAAVRTLNKVAMK-----HPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGT-------ESSVDRLMKQISS 361 (865)
T ss_pred cHHHHHHHHHHHHHHHHHh-----CCccccccchhHHhhhcccccchhHHHHHHHHHhcc-------hhHHHHHHHHHHH
Confidence 9999999999998877752 223333322222 22334455555555544332 2334466667777
Q ss_pred ccccCChhhHHHHHHHHHHHhh
Q 000797 1068 LQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1068 ~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
|..|-+++.+...+.+..+|+.
T Consensus 362 fv~disDeFKivvvdai~sLc~ 383 (865)
T KOG1078|consen 362 FVSDISDEFKIVVVDAIRSLCL 383 (865)
T ss_pred HHHhccccceEEeHHHHHHHHh
Confidence 8777777777777777666664
No 119
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.51 E-value=4.3 Score=43.66 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHHhhccCCcchHHHHHHHHH--------hHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhhhHHhhhc
Q 000797 1075 KMRRNAFAAFGALSNFGVGSQREAFLEQIHA--------MLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1145 (1280)
Q Consensus 1075 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~--------~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~ 1145 (1280)
+||.+|+.+++++++....+....|-...+- .-.+|+. -+.|+++.||.++..++..+=.-.+-.+... +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A-e 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA-E 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH-H
Confidence 4899999999999986455544444433221 1122222 3679999999999888876543222212111 1
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCC-ChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHH
Q 000797 1146 SHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1224 (1280)
Q Consensus 1146 ~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~-~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~ 1224 (1280)
.. .++..+|-.|-..++..+++-+...+.. +..+ ...+-...-.-+..++++-|=+.+..--...+++
T Consensus 80 ~~---~~~~~sFtslS~tLa~~i~~lH~~Ll~~--------L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~ 148 (182)
T PF13251_consen 80 ES---KGPSGSFTSLSSTLASMIMELHRGLLLA--------LQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVT 148 (182)
T ss_pred hc---CCCCCCcccHHHHHHHHHHHHHHHHHHH--------HhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHH
Confidence 10 1334677777777777777644333222 2222 2223333444455566654433333222466777
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1225 LLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1225 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
.+.. +..+-|+.||..+.-++|-+.
T Consensus 149 ~v~~-~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 149 QVRP-LLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHH-HHhcCCCcHHHHHHHHHHHHH
Confidence 7888 678899999999999988775
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.02 E-value=20 Score=41.63 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=102.5
Q ss_pred hHHHHHHHHh-hhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch----h
Q 000797 937 EVQTICLILT-KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----H 1011 (1280)
Q Consensus 937 ~~~~il~~l~-~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~----~ 1011 (1280)
.+..+++.++ |.++|.+..=|..|+-.++=+.= .....-++-+..+...++..+..||..|++++..+... .
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L---ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCL---LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4557786665 99999999999999877775321 11223333455566666556999999999999877421 1
Q ss_pred h--------hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc---CChhhHHHH
Q 000797 1012 I--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS---MNVKMRRNA 1080 (1280)
Q Consensus 1012 v--------~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed---e~~~vR~aA 1080 (1280)
. ......++..+.+.|++.++++...|..|+.|++-.-.-.+...++-.| +.-+|+. ++..+|..=
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L---ll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL---LLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH---HHHHcCcccCCcHHHHHHH
Confidence 1 1234578889999999988899999999999998442222212333333 2335655 445666654
Q ss_pred HHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh
Q 000797 1081 FAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1113 (1280)
Q Consensus 1081 i~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH 1113 (1280)
-.-|=..+. ... .-.+.+..+.+|.+..
T Consensus 177 ~~Ffp~y~~-s~~----~~Q~~l~~~f~~~l~~ 204 (298)
T PF12719_consen 177 SVFFPVYAS-SSP----ENQERLAEAFLPTLRT 204 (298)
T ss_pred HHHHHHHHc-CCH----HHHHHHHHHHHHHHHH
Confidence 444444442 111 1123444555555554
No 121
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.96 E-value=1.1 Score=48.44 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH-HHh
Q 000797 1175 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KSI 1253 (1280)
Q Consensus 1175 ~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~ 1253 (1280)
-++.|+...+...-|+...+|..|..+++.+++. +-...-+.+..|+. |..||+|.||..|.+.+..+. |+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q------GLvnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQ------GLVNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc------CCCChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHHHHhH
Confidence 4567888999999999999999999999999963 11233445788999 899999999999999998875 443
Q ss_pred h
Q 000797 1254 N 1254 (1280)
Q Consensus 1254 ~ 1254 (1280)
.
T Consensus 78 s 78 (187)
T PF12830_consen 78 S 78 (187)
T ss_pred H
Confidence 3
No 122
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.87 E-value=12 Score=45.18 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=121.9
Q ss_pred HhHHHHHHHhhccCCChH-HHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh--ccC
Q 000797 1016 ATQVLSVILALLDDLDES-VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN--FGV 1092 (1280)
Q Consensus 1016 ~~~lL~all~~L~d~d~~-V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~--~~~ 1092 (1280)
+.+..++++.|=+|..+. |..+|..++.-.+-+-.-.....+..+-+.-+..-++|..-.+|..|+-..|.+.. ..+
T Consensus 388 ~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~ 467 (728)
T KOG4535|consen 388 RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVN 467 (728)
T ss_pred chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcC
Confidence 457788888888875554 55777777766554434344444555555555444555568899999999998865 244
Q ss_pred CcchHHHHHHHHHhHHHHHHh---ccC-CCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHH
Q 000797 1093 GSQREAFLEQIHAMLPRLILH---IYD-DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQF 1168 (1280)
Q Consensus 1093 ~~~~~~~~eqv~~~LvpLLlH---L~D-~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L 1168 (1280)
....+.+.+.+.+.++--+.. +.| ++..|+..+-++|+....++..... ..+++.+..--..+
T Consensus 468 ~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~-------------~~~~e~~~~~~~~l 534 (728)
T KOG4535|consen 468 MPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEK-------------PTFAEIIEESIQAL 534 (728)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhh-------------ccHHHHHHHHHHhc
Confidence 555566667666555544443 222 3446777788888776666553111 01111110000000
Q ss_pred HHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 000797 1169 VQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1248 (1280)
Q Consensus 1169 ~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1248 (1280)
...-+ +- ..-.+|.||...+|-+.+|-.-..-.+.=..+++++|-.++.+-..-.||..||.||..
T Consensus 535 ~~~v~---------~~-----~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 535 ISTVL---------TE-----AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cccee---------cc-----cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 00000 01 12348999999999999863311111122467899998855556788999999999865
Q ss_pred HH
Q 000797 1249 LL 1250 (1280)
Q Consensus 1249 l~ 1250 (1280)
-+
T Consensus 601 p~ 602 (728)
T KOG4535|consen 601 PG 602 (728)
T ss_pred CC
Confidence 44
No 123
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.82 E-value=14 Score=49.17 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=78.4
Q ss_pred ccccccCChhhHHHHHHHHHHHhhc-cCCcchHHHHHHHHH-hHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhh
Q 000797 1066 RNLQVSMNVKMRRNAFAAFGALSNF-GVGSQREAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1143 (1280)
Q Consensus 1066 r~~fede~~~vR~aAi~lfG~L~~~-~~~~~~~~~~eqv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l 1143 (1280)
-++++.|+..+|.+-..+.|++... -.+..-++.-.++.. .+--|..|+.|-++-||..+-..+.++.
T Consensus 318 v~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~---------- 387 (1251)
T KOG0414|consen 318 VDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLF---------- 387 (1251)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH----------
Confidence 3678999999999999999999752 233333555555665 5555666999999999987755544422
Q ss_pred hcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc
Q 000797 1144 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1144 ~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
+.+. ...++.+.++.-++.-+.|-..-||++|+..+..++.+-|
T Consensus 388 -~~~s----------------------~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 388 -QQHS----------------------IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -HccC----------------------CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 2221 1233445566667788888889999999998877766544
No 124
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.75 E-value=36 Score=44.23 Aligned_cols=138 Identities=22% Similarity=0.257 Sum_probs=91.9
Q ss_pred CChhHHHHHHhhccCCcch--hhhhhH--hHHHHHHHhhccCC--ChHHHHHHHHHHHHHhccCCcccchhhhH--HHHH
Q 000797 992 ESPTVRGLCLRGLVQIPSI--HIHQYA--TQVLSVILALLDDL--DESVQLTAVSCLLTILKSSSKDAVEPILL--NLSV 1063 (1280)
Q Consensus 992 ~~~~VR~laLrGLg~l~~~--~v~~~~--~~lL~all~~L~d~--d~~V~~ea~~~L~~ll~~l~~~~~~~~l~--~l~~ 1063 (1280)
.+...-.-++=-|+|++.. +..+.. ..++|-+.+.|... ++++++|++..++.+... ...+..+. .+..
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---~~~A~lL~~sgli~ 579 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---PECAPLLAKSGLIP 579 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---HHHHHHHHhCChHH
Confidence 4666666777777788643 222222 36788888888764 467999999999987742 22333332 4444
Q ss_pred Hhcccccc--CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchh
Q 000797 1064 RLRNLQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1135 (1280)
Q Consensus 1064 ~lr~~fed--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1135 (1280)
.+-.+|.. |++++=.--...|+.+... +.-++.+.++. +..--|+-.++|.|++||+.|-.+|..++.+
T Consensus 580 ~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~-~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 580 TLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKET-EIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhcc-chHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 55455543 5688888889999999863 33344444442 2333344478999999999999999998864
No 125
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.67 E-value=1.2 Score=42.36 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHH
Q 000797 941 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1020 (1280)
Q Consensus 941 il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL 1020 (1280)
.++.....++++..+-|.-|+.-+..++..........+.++..+...++|+++-|=--|++||+.++.. +...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~----~p~~vl 79 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR----HPDEVL 79 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH----ChHHHH
Confidence 3444555566666666666666666666654311222355566666666666666666666666666542 122345
Q ss_pred HHHHhhccC
Q 000797 1021 SVILALLDD 1029 (1280)
Q Consensus 1021 ~all~~L~d 1029 (1280)
+.+++...+
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 555544433
No 126
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.31 E-value=3.9 Score=54.00 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhh-CCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCCh
Q 000797 954 RFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDE 1032 (1280)
Q Consensus 954 ~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l-~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~ 1032 (1280)
+.-+.+|+..++.|+.=+ ...-+.-++.|..-+ +.|+|.||.=+.-|+|.++..- ......-=+-++.-|.|.+.
T Consensus 937 p~Lq~AAtLaL~klM~iS---a~fces~l~llftimeksp~p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~ 1012 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCIS---AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESP 1012 (1251)
T ss_pred HHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc-ccccchhhHHHHHHhcCccH
Confidence 445688999999987532 222234455666656 4899999999999999998530 00112223457888999999
Q ss_pred HHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH
Q 000797 1033 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1112 (1280)
Q Consensus 1033 ~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl 1112 (1280)
.|+..|+..|+.++-. +.-.+.-++-.+|. +++|++..+|..|=.-|-.|++- | +-+.+.|+-.+-
T Consensus 1013 ~vRkta~lvlshLILn-dmiKVKGql~eMA~----cl~D~~~~IsdlAk~FF~Els~k--~-------n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1013 SVRKTALLVLSHLILN-DMIKVKGQLSEMAL----CLEDPNAEISDLAKSFFKELSSK--G-------NTIYNLLPDILS 1078 (1251)
T ss_pred HHHHHHHHHHHHHHHh-hhhHhcccHHHHHH----HhcCCcHHHHHHHHHHHHHhhhc--c-------cchhhhchHHHH
Confidence 9999999999998732 12233344444443 78999999999999999999862 2 346677777777
Q ss_pred hccCCCH
Q 000797 1113 HIYDDDL 1119 (1280)
Q Consensus 1113 HL~D~~~ 1119 (1280)
||.|.+.
T Consensus 1079 ~Ls~~~l 1085 (1251)
T KOG0414|consen 1079 RLSNGNL 1085 (1251)
T ss_pred hhccCcc
Confidence 8888843
No 127
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.24 E-value=1.9 Score=42.35 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHH
Q 000797 1032 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1111 (1280)
Q Consensus 1032 ~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1111 (1280)
..-...++.++..++. +....+.++.++|+--|+.-++.+ ++|..|++....+.+.-..++-.++.+|+...++|+.
T Consensus 29 ~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 29 IPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 3466888999999998 778899999999999999988776 9999999999999987777888999999999998864
No 128
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=89.17 E-value=67 Score=39.89 Aligned_cols=295 Identities=15% Similarity=0.185 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHhhhhcccc-ccchHHHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhhCCCChhHH
Q 000797 920 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ-RFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVR 997 (1280)
Q Consensus 920 ~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~-~~~R~~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR 997 (1280)
..++..|++++..+....+..|.+...-++.... ..-|.+|.-++.+++.++.. ...........+.+.-.|++---|
T Consensus 8 ~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 8 IKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHH
Confidence 3455566777666666667777777776665543 33688888888888887755 222223344555555555555667
Q ss_pred HHHHhhccCCcchhhhhhHhHHHHHHHhhccC---------------------------CChHHHHHHHHHHHHHhc---
Q 000797 998 GLCLRGLVQIPSIHIHQYATQVLSVILALLDD---------------------------LDESVQLTAVSCLLTILK--- 1047 (1280)
Q Consensus 998 ~laLrGLg~l~~~~v~~~~~~lL~all~~L~d---------------------------~d~~V~~ea~~~L~~ll~--- 1047 (1280)
.-||+.|.+=+.+ +.-+...+.+-+...|.. .++......+.-+.+++.
T Consensus 88 l~aL~~LT~~Grd-i~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~ 166 (464)
T PF11864_consen 88 LEALIALTDNGRD-IDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNF 166 (464)
T ss_pred HHHHHHHHcCCcC-chhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCC
Confidence 7777777654432 111222223333322221 122233444444555543
Q ss_pred -cCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHH
Q 000797 1048 -SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1126 (1280)
Q Consensus 1048 -~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack 1126 (1280)
.+++..+..++-+++.-... ....+++ .+++.+|..+..|+.=+ ..-..++...|-..+ .+. +..+.
T Consensus 167 ~~l~e~~i~~lv~~i~~iC~~--Ts~~~di-~~~L~vldaii~y~~iP--~~sl~~~i~vLCsi~-~~~----~l~~~-- 234 (464)
T PF11864_consen 167 NYLDEDEISSLVDQICTICKS--TSSEDDI-EACLSVLDAIITYGDIP--SESLSPCIEVLCSIV-NSV----SLCKP-- 234 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHhc--cCcHHHH-HHHHHHHHHHHHcCcCC--hHHHHHHHHHHhhHh-ccc----ccchh--
Confidence 23344444444333322111 1222344 66788888887764321 222222222222221 011 11111
Q ss_pred HHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHh
Q 000797 1127 NTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSI 1205 (1280)
Q Consensus 1127 ~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l 1205 (1280)
-| -+..++..|. | ...++.+|..|.+..+.. .+...+-+.|+.|+|.+
T Consensus 235 ----------~w~~m~nL~~S~~---g-----~~~i~~L~~iL~~~~~~~-------------~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 235 ----------SWRTMRNLLKSHL---G-----HSAIRTLCDILRSPDPQN-------------KRDINVLRGAVFFLRML 283 (464)
T ss_pred ----------HHHHHHHHHcCcc---H-----HHHHHHHHHHHcccCccc-------------cccHHHHhhHHHHHHHH
Confidence 24 4444555442 1 236677787774333322 22344445699999999
Q ss_pred hccCchhhhhhcCHHH--HHHHHHHHhccCCChhhHHHHHHHHHHHH-----HHhhhcccc
Q 000797 1206 LCLCDDQHILSLFYTQ--VFGLLVVKLSQSADAIVRATCSSSLGWLL-----KSINSHSWR 1259 (1280)
Q Consensus 1206 ~~~~~~~~~~~~~~e~--~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-----k~~~~~~~~ 1259 (1280)
+.....+....+.... +..+|..+ ++-+++.|-...-+.+..+. +-.....|.
T Consensus 284 l~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 284 LWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred HhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 9877666665655555 89999995 55566666555555444433 333445565
No 129
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.11 E-value=0.97 Score=44.33 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=70.1
Q ss_pred HHHHHhhhCC----CChhHHHHHHhhccCCcc---hhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccc
Q 000797 982 VEALCRHVSD----ESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1054 (1280)
Q Consensus 982 i~~L~~~l~D----~~~~VR~laLrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~ 1054 (1280)
+..+.+-++| .+..-|+.+++|++.+-. ..+....+++..++-.+++. ++....|+.+-..++..++.+++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHH
Confidence 3444444555 566669999999998753 37788889988888888875 37888999999999999999999
Q ss_pred hhhhHHHHHHhccccc
Q 000797 1055 EPILLNLSVRLRNLQV 1070 (1280)
Q Consensus 1055 ~~~l~~l~~~lr~~fe 1070 (1280)
++++-++..-+.|+++
T Consensus 91 ~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 91 GPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999888888765
No 130
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=7.2 Score=47.67 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=91.8
Q ss_pred ccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh--ccCCCHHHHHHHHHHHHhhchhhhhhHHhh
Q 000797 1066 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH--IYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1143 (1280)
Q Consensus 1066 r~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH--L~D~~~~V~~ack~tL~~~a~~L~w~l~~l 1143 (1280)
..++-|.++-+|.+-+...|. +|++... ...|.=++| ..|.|.+||.|+--||+-++-
T Consensus 522 ~ell~d~ds~lRy~G~fs~al--Ay~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--------- 581 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLAL--AYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--------- 581 (926)
T ss_pred HHHhcCchHHhhhccHHHHHH--HHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEe---------
Confidence 346777888999987766654 3433322 255677787 589999999999888876441
Q ss_pred hcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHH
Q 000797 1144 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVF 1223 (1280)
Q Consensus 1144 ~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~ 1223 (1280)
.+- + . ++.+.-...+|-.+++|++.|..+|.....-. .....
T Consensus 582 ------~D~-----~-~------------------lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~~~a~ 623 (926)
T COG5116 582 ------DDR-----D-L------------------LVGTVELLSESHNFHVRAGVAVALGIACAGTG--------DKVAT 623 (926)
T ss_pred ------cCc-----c-h------------------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------cHHHH
Confidence 111 1 1 11111224477889999999999998765433 23344
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHHhhhcc
Q 000797 1224 GLLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1257 (1280)
Q Consensus 1224 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1257 (1280)
.-|.. |-.||...||..|-.|++.+...||--.
T Consensus 624 diL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 624 DILEA-LMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred HHHHH-HhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 55666 7889999999999999999998887544
No 131
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=12 Score=43.97 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=91.5
Q ss_pred ccccccchHHHHHHHHHhhhCCCchhhHHHH-HHHHHHhhhCCCChhHHHHHHhhccCCcch------hhhhhHhHHHHH
Q 000797 950 NRQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI------HIHQYATQVLSV 1022 (1280)
Q Consensus 950 ~s~~~~~R~~a~aflsEll~~~~~~~~l~~~-~i~~L~~~l~D~~~~VR~laLrGLg~l~~~------~v~~~~~~lL~a 1022 (1280)
++.+-.+|..|.-=|-+++.+-.....+..- -+..+...++++++.+|..|.+-+|..... .+-++ .-++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHH
Confidence 4556667777777777777654322222211 233445589999999999999999977643 22222 25677
Q ss_pred HHhhccCCC-hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc--CChhhHHHHHHHHHHHhh
Q 000797 1023 ILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1023 ll~~L~d~d-~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed--e~~~vR~aAi~lfG~L~~ 1089 (1280)
++..|...+ ..+...|+.|++.++..-....-.-+.++=..-|++.+++ .+..++.-|+.+++.+..
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 777777544 4577999999999997643322222222223456777877 778888999999999986
No 132
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.12 E-value=1.3 Score=43.43 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=70.7
Q ss_pred HHHHHHhhhCCCC---hh-HHHHHHhhccCCcc---hhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCccc
Q 000797 981 MVEALCRHVSDES---PT-VRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1053 (1280)
Q Consensus 981 ~i~~L~~~l~D~~---~~-VR~laLrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~ 1053 (1280)
+++.+.+-++|++ |. -|+-++|+++.+-. ..+....+++..++-.+|+ .++....|+.+...++..++.++
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4455666667766 32 38899999997643 3788888999999999997 45699999999999999999999
Q ss_pred chhhhHHHHHHhccccc
Q 000797 1054 VEPILLNLSVRLRNLQV 1070 (1280)
Q Consensus 1054 ~~~~l~~l~~~lr~~fe 1070 (1280)
+++++-.+..-+.|+++
T Consensus 90 l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 90 LGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999888887777765
No 133
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=87.91 E-value=39 Score=42.70 Aligned_cols=261 Identities=11% Similarity=0.095 Sum_probs=142.7
Q ss_pred HHHHhhhCCCChhHHHHHHhh---ccCCcchhhhhhHhHHHHHHHhhccCCChH-HHHHHHHHHHHHhccCCcccchhhh
Q 000797 983 EALCRHVSDESPTVRGLCLRG---LVQIPSIHIHQYATQVLSVILALLDDLDES-VQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 983 ~~L~~~l~D~~~~VR~laLrG---Lg~l~~~~v~~~~~~lL~all~~L~d~d~~-V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
..|.+.+=.|+....-++..- +++.+..+...++-..|--+++.+-..... +.+..+ |+++...|.+++-..+.
T Consensus 269 ~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~~~L~~L--L~Rl~~~m~~~~q~~~v 346 (559)
T PF14868_consen 269 RFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQLINLSIL--LRRLFFLMAPDHQSEFV 346 (559)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhHhhHHHH--HHHHHHhcCHHHHHHHH
Confidence 456666677999999998887 777776655444445555666666432222 333333 77887777766554333
Q ss_pred HHHHHHhccc-------------cccCChhhHHHHHHHHHHHh-----hccC-CcchHHHHHHHHHhHHHHHHhccCCCH
Q 000797 1059 LNLSVRLRNL-------------QVSMNVKMRRNAFAAFGALS-----NFGV-GSQREAFLEQIHAMLPRLILHIYDDDL 1119 (1280)
Q Consensus 1059 ~~l~~~lr~~-------------fede~~~vR~aAi~lfG~L~-----~~~~-~~~~~~~~eqv~~~LvpLLlHL~D~~~ 1119 (1280)
.+..|. |+.=.+.+|.-+..=+.+.+ ++-. +...-.-.++....+-.++...++...
T Consensus 347 ----~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~ 422 (559)
T PF14868_consen 347 ----QDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGS 422 (559)
T ss_pred ----HhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhccccc
Confidence 233333 12233445554443222221 1111 222333445555566666665555444
Q ss_pred HHHHHHHHHHHhhchhhhhhH--HhhhcccCCCCCCCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHhhhcC-CChhHH
Q 000797 1120 SVRQACRNTLKQVAPFMEIGV--YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEA-PWPIIQ 1195 (1280)
Q Consensus 1120 ~V~~ack~tL~~~a~~L~w~l--~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~-~~~~~~~l~~~l~ylkS-~~~~IR 1195 (1280)
.+-.....++-.+..-+...+ +.+-..+.++ -.+... -.+...+.+.. |+.+...+...-..+++ |-..+|
T Consensus 423 ~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~----~~~~~l-L~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~k 497 (559)
T PF14868_consen 423 TIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQ----QTLSLL-LSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVK 497 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHhchhhhccchHHH----HHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccch
Confidence 444444344433333222121 2221111000 011212 23334444444 66777766665666644 444599
Q ss_pred HHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhhh
Q 000797 1196 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1255 (1280)
Q Consensus 1196 ~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1255 (1280)
-+++.|+|.+.+...++.....-...+..-+-. |++|.+..|+..|-+|.|+|...+++
T Consensus 498 l~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~-LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 498 LALLDFLSSLGKLFIPESDQNPVSPALSELFHM-LLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHhccccCCccccchhhhHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 999999999998655544433333445444444 89999999999999999999987765
No 134
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=16 Score=50.16 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=150.9
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHH
Q 000797 1020 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1099 (1280)
Q Consensus 1020 L~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~ 1099 (1280)
+.-+++.|.-.|+.--..|+.-|+.+++..+.+....++...+.-...+.-|++..||.+.+..|-.+.... ++.+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l----kk~l 118 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL----KKKL 118 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH----HHHh
Confidence 444555666667777788999999999888877777777777777778888999999999999999998632 2333
Q ss_pred HHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHH
Q 000797 1100 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDS 1178 (1280)
Q Consensus 1100 ~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~ 1178 (1280)
-..+...++|.+.--.|.+..|+++++.++..+.+-=+| .+-..++. +...-....+..+.|+.+..
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~------------~i~~~~~~~~~~~~~~slSd 186 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDP------------EIFYLVTEILVKETPDSLSD 186 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhH------------HHHHHHHHHHhccCccccch
Confidence 333444556666688899999999999999999883333 33333221 12222345567788888887
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHhhc-cCchhhhhhcC----HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHh
Q 000797 1179 YMGSTIQAFEAPWPIIQANAIYFSSSILC-LCDDQHILSLF----YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1179 ~l~~~l~ylkS~~~~IR~aA~~fiG~l~~-~~~~~~~~~~~----~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1253 (1280)
.-.-+-.+..+--.++-..+-...-.+++ ..+.+++.... .----+.+-. +.+++.|.||..+-+.+..+.+..
T Consensus 187 ~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk-~~~~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 187 LRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWK-LLKSKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred hhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHH-HhcCCCcchhHHHHHHHHHHHhhh
Confidence 66666777777777776667666655553 44444443111 1112234555 788999999999999988877655
Q ss_pred hhc
Q 000797 1254 NSH 1256 (1280)
Q Consensus 1254 ~~~ 1256 (1280)
..+
T Consensus 266 ~~~ 268 (1312)
T KOG0803|consen 266 LNR 268 (1312)
T ss_pred HHh
Confidence 443
No 135
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.67 E-value=19 Score=45.56 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=110.5
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhh
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1015 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~ 1015 (1280)
.+.+++++++....|++..-|.-..-.+.-++++... ...+.+.+...+..++.|-.|.||.-|+.+|..+-.......
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 6889999999999999999998888888888885444 446677788889999999999999999999987752200000
Q ss_pred HhHHHHHHHhhcc-CCChHHHHHHHHHHH-------HHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHH
Q 000797 1016 ATQVLSVILALLD-DLDESVQLTAVSCLL-------TILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1087 (1280)
Q Consensus 1016 ~~~lL~all~~L~-d~d~~V~~ea~~~L~-------~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L 1087 (1280)
-.+.+++...++ |++++|+..||..+. .|+++.. +++..--.++- ...+ ++-++|..+|.-+--|
T Consensus 162 -~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRar--DV~~anRrlvY--~r~l--pkid~r~lsi~krv~L 234 (892)
T KOG2025|consen 162 -CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERAR--DVSGANRRLVY--ERCL--PKIDLRSLSIDKRVLL 234 (892)
T ss_pred -ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhh--hhhHHHHHHHH--HHhh--hhhhhhhhhHHHHHHH
Confidence 112223333332 455678887776543 2333211 11100000000 0111 1225566666655555
Q ss_pred hhccCCcc----hHHHHHHHHH--------hHHHHHHhccCCCH-HHHHHHHHHHHh
Q 000797 1088 SNFGVGSQ----REAFLEQIHA--------MLPRLILHIYDDDL-SVRQACRNTLKQ 1131 (1280)
Q Consensus 1088 ~~~~~~~~----~~~~~eqv~~--------~LvpLLlHL~D~~~-~V~~ack~tL~~ 1131 (1280)
..+|-... +.++.+.+.+ .++-+|-.|.=.+. +|+-.+-.||..
T Consensus 235 lewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 235 LEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 55432211 2222333333 55566655655555 888888888887
No 136
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.65 E-value=1.7 Score=46.78 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=71.0
Q ss_pred hhCCCChhHHHHHHhhccCCcch-----------h------------hhhhHhHHHHHHHhhccCC-ChHHHHHHHHHHH
Q 000797 988 HVSDESPTVRGLCLRGLVQIPSI-----------H------------IHQYATQVLSVILALLDDL-DESVQLTAVSCLL 1043 (1280)
Q Consensus 988 ~l~D~~~~VR~laLrGLg~l~~~-----------~------------v~~~~~~lL~all~~L~d~-d~~V~~ea~~~L~ 1043 (1280)
.++||++.||..|+..|..+-++ + ...-..++=.+++..|+.. +..+....+.+|.
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 36889999999988877765322 0 0000111222344444443 4567778888898
Q ss_pred HHhccCCcccch-hhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1044 TILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1044 ~ll~~l~~~~~~-~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
-++..-.-..+. .++..+...++++..+-+.+||.++...+|.+..
T Consensus 128 ~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 128 VLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 888765544443 6777888899999999999999999999999986
No 137
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.15 E-value=3.8 Score=43.39 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=85.4
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCC-Cc-----hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcc-
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GG-----FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS- 1009 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~-~~-----~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~- 1009 (1280)
.+......+..+|+|.+...|.+|+..+...+..+ .+ -..++..++..|.+ +..+.++.+++..|+.+-.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999999999988865 22 12344445555544 4567789999999987632
Q ss_pred ---------hhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHH
Q 000797 1010 ---------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1061 (1280)
Q Consensus 1010 ---------~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l 1061 (1280)
+-.....+.++++++..+++ +.+...++.+|..++..- ....+++.-++
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~ki 156 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFANKI 156 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHHHH
Confidence 12345567788888888765 578889999999999753 34455544433
No 138
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.84 E-value=3.1 Score=44.64 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHhhccCC----cchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHh---ccCC
Q 000797 978 LEQMVEALCRHVSDESPTVRGLCLRGLVQI----PSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL---KSSS 1050 (1280)
Q Consensus 978 ~~~~i~~L~~~l~D~~~~VR~laLrGLg~l----~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll---~~l~ 1050 (1280)
.+..++.+.+++...+.-.|-+|.+|.-.+ +.+++-...++++..+-.+|...|.+|...++.+|..++ +.++
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 355788888888888888888888888877 334777788999999999999999999999999999994 4333
Q ss_pred cccchhhhHHHHHHhccccccC-----------ChhhHHHHHHHHHHHhhcc
Q 000797 1051 KDAVEPILLNLSVRLRNLQVSM-----------NVKMRRNAFAAFGALSNFG 1091 (1280)
Q Consensus 1051 ~~~~~~~l~~l~~~lr~~fede-----------~~~vR~aAi~lfG~L~~~~ 1091 (1280)
+.+.+++-+|...+.-|.++. +..++...-..+..+-+.|
T Consensus 116 -~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~G 166 (183)
T PF10274_consen 116 -EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNG 166 (183)
T ss_pred -HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhc
Confidence 456677777766665444432 2444454445555554433
No 139
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.42 E-value=24 Score=44.96 Aligned_cols=243 Identities=13% Similarity=0.147 Sum_probs=149.9
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhh
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQ 1014 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~ 1014 (1280)
++--++..+-+=|+.|+|.-|-..+-|+..| ....+++++++...+.|.++++-||+-|+-+++.|-.. +.-.
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckL-----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p 170 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKL-----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP 170 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhc-----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC
Confidence 4455666677888999999999999998764 34678899999999999999999999999999987432 3333
Q ss_pred hHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCc
Q 000797 1015 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1094 (1280)
Q Consensus 1015 ~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~ 1094 (1280)
..|.++.-.+.. +.|...-..|+-.|- ..+++..-.|+..-..++..| ++.+...-+.+..+++..
T Consensus 171 DapeLi~~fL~~--e~DpsCkRNAFi~L~----~~D~ErAl~Yl~~~idqi~~~----~~~LqlViVE~Irkv~~~---- 236 (948)
T KOG1058|consen 171 DAPELIESFLLT--EQDPSCKRNAFLMLF----TTDPERALNYLLSNIDQIPSF----NDSLQLVIVELIRKVCLA---- 236 (948)
T ss_pred ChHHHHHHHHHh--ccCchhHHHHHHHHH----hcCHHHHHHHHHhhHhhccCc----cHHHHHHHHHHHHHHHhc----
Confidence 345555554443 234556666666543 334444445555444433322 356777777888887751
Q ss_pred chHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchh---hhh---hHHhhhcccCCCCCCCCChHHHHHHHHHHH
Q 000797 1095 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF---MEI---GVYGIFNSHCFNSDHRSDYETFVRDLTRQF 1168 (1280)
Q Consensus 1095 ~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~---L~w---~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L 1168 (1280)
....+.+-++++..||. -.++.|+=.|.-||-.+.+- ++. .+-++..+. .+ +.-+ -++.|-...+
T Consensus 237 -~p~~~~~~i~~i~~lL~---stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~ke---sd-nnvk-lIvldrl~~l 307 (948)
T KOG1058|consen 237 -NPAEKARYIRCIYNLLS---STSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKE---SD-NNVK-LIVLDRLSEL 307 (948)
T ss_pred -CHHHhhHHHHHHHHHHh---cCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhc---cC-cchh-hhhHHHHHHH
Confidence 12233343445444443 34566665554444443321 111 111122221 11 1111 1334444555
Q ss_pred HHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 000797 1169 VQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC 1207 (1280)
Q Consensus 1169 ~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~ 1207 (1280)
...+.+-...+++..+..+.||.-++|+-+--|+=-++.
T Consensus 308 ~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 308 KALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred hhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 566777788899999999999999999988877644443
No 140
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.05 E-value=59 Score=37.23 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=126.2
Q ss_pred HHHhhhCCCChhHHHHHHhhccCCcch----hh-hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 984 ALCRHVSDESPTVRGLCLRGLVQIPSI----HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 984 ~L~~~l~D~~~~VR~laLrGLg~l~~~----~v-~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
.|-..+.++++.+|.-|++-|+++... .. ++....++.-..+-|+ |...+..|+.|+..++.. ..- .....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~-~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF-SPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC-ChhhH
Confidence 456678999999999999988866432 22 2234555666666675 466777778888888833 221 11222
Q ss_pred HHHHHHhcccc--ccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCC--CHHHHHHHHHHHHhhch
Q 000797 1059 LNLSVRLRNLQ--VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD--DLSVRQACRNTLKQVAP 1134 (1280)
Q Consensus 1059 ~~l~~~lr~~f--ede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~--~~~V~~ack~tL~~~a~ 1134 (1280)
..++..+..-. ..-....|...+.++..+... ....+ ...-...+.-++|+-|. ||.--..+..-+..+..
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~----~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN----HREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH----hHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 33333332211 223467899999999998762 11111 21222333334443333 33333333333333222
Q ss_pred hhhh--hHHhhhccc----------CCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 000797 1135 FMEI--GVYGIFNSH----------CFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFS 1202 (1280)
Q Consensus 1135 ~L~w--~l~~l~~~~----------~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fi 1202 (1280)
.+.. ...++|.-- .-++.-+.+-++--..+-.+|. ..|.-...-+-..+.=+.|+.+.+|.-+-..+
T Consensus 154 ~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 154 EFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred hcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 2211 333344321 1111113444555555555554 34555556666777889999999999998888
Q ss_pred HHhhccCchhhhhhcCHHHHHHHHH
Q 000797 1203 SSILCLCDDQHILSLFYTQVFGLLV 1227 (1280)
Q Consensus 1203 G~l~~~~~~~~~~~~~~e~~~~~L~ 1227 (1280)
..-+..++.+.+ ......+.++|.
T Consensus 233 ~~c~~~y~~~~~-~~~~~~iw~~lk 256 (262)
T PF14500_consen 233 KACIENYGADSL-SPHWSTIWNALK 256 (262)
T ss_pred HHHHHHCCHHHH-HHHHHHHHHHHH
Confidence 877776665443 123344555544
No 141
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=85.73 E-value=40 Score=46.07 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=127.1
Q ss_pred hHHH-HHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHHhhhcccCCC---------------------CCCC-----
Q 000797 830 DILQ-AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS---------------------GQHE----- 882 (1280)
Q Consensus 830 ~~~l-aAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~---------------------~~~~----- 882 (1280)
+-++ ||+|+|-.+=+.. |+|.++.++=.==-.+=|+|+-|-++-..+ |.++
T Consensus 312 ~H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred chhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 3467 9999998877777 999887654221122224455444433211 1111
Q ss_pred -hHHHHHHHHHHHHHhh--cchHHHHHHHhcCCCC----chhhHHHH--HHHHHHHHHhhCC-hhHHHHHHHHhhhhccc
Q 000797 883 -PLRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWINL--IGDVAGCVSIKRP-KEVQTICLILTKSINRQ 952 (1280)
Q Consensus 883 -P~~~~l~Alk~ll~~~--~~~~~~~~l~~~~~w~----~~~~~~~g--V~lLar~l~~~~~-~~~~~il~~l~~~L~s~ 952 (1280)
-.+-+++|+-+-|... +..||.+.+-++-.|. ......+. |+-||.+-.+.+- --++.|+..|+.+ |.
T Consensus 390 Cs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNL--SA 467 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNL--SA 467 (2195)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhh--hh
Confidence 1233444444333332 2345666666777897 33444443 4455665444433 5799999999998 44
Q ss_pred cccchHH-------HHHHHHHhhhCC------------Cc---------------hhhHHH-HHHHHHHhhhCCCChhHH
Q 000797 953 QRFQREA-------AAAALSEFVRYS------------GG---------------FDSLLE-QMVEALCRHVSDESPTVR 997 (1280)
Q Consensus 953 ~~~~R~~-------a~aflsEll~~~------------~~---------------~~~l~~-~~i~~L~~~l~D~~~~VR 997 (1280)
.+....+ |++||+-+|..- .+ .+.+.+ .++.+|++.|+..+-+|-
T Consensus 468 HcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiV 547 (2195)
T KOG2122|consen 468 HCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIV 547 (2195)
T ss_pred cccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEe
Confidence 4444433 567888766532 11 012222 267788888888888888
Q ss_pred HHHHhhccCCcch--hhhhh--HhHHHHHHHhhccCCChHHHHHHHHHHHHHhccC
Q 000797 998 GLCLRGLVQIPSI--HIHQY--ATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1049 (1280)
Q Consensus 998 ~laLrGLg~l~~~--~v~~~--~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l 1049 (1280)
.=++-.|+||.-. +..++ -...++-+.+.+..++..|++.+..+|.++|..=
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 8888888898632 22111 1122444555556667789999999999999764
No 142
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=85.33 E-value=2.6 Score=45.15 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=73.2
Q ss_pred hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhc--cCCc
Q 000797 1017 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF--GVGS 1094 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~--~~~~ 1094 (1280)
...||-+.+||.+.+.+-..-|..+...++..-..+.+-+++.+|...|+.-++..+++|..++..++-.|+.. +.|.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 46799999999999999999999999999998666778899999999999999999999999999999999542 2344
Q ss_pred chHHHHHHH
Q 000797 1095 QREAFLEQI 1103 (1280)
Q Consensus 1095 ~~~~~~eqv 1103 (1280)
.-.||..|+
T Consensus 117 aLvPyyrqL 125 (183)
T PF10274_consen 117 ALVPYYRQL 125 (183)
T ss_pred HHHHHHHHH
Confidence 444554443
No 143
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.96 E-value=4.9 Score=50.12 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCch-------hhHHHHHHHHHHhhhCCC
Q 000797 920 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-------DSLLEQMVEALCRHVSDE 992 (1280)
Q Consensus 920 ~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~-------~~l~~~~i~~L~~~l~D~ 992 (1280)
+..|.+-..-++.-.|..+-+=++++...|+|..-.-|-.-+-+++.++.+.... .-.+..++..|.+++.|.
T Consensus 279 pk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~ 358 (1128)
T COG5098 279 PKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT 358 (1128)
T ss_pred hHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc
Confidence 3445555555666667777778899999999999999987777777766543111 113455889999999999
Q ss_pred ChhHHHHHHhhccCCcch--hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 000797 993 SPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1048 (1280)
Q Consensus 993 ~~~VR~laLrGLg~l~~~--~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~ 1048 (1280)
+|-+|--||+|+..+-.- +-..-+..+.......+.|...-|+..|+..++++|-.
T Consensus 359 ~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 359 YPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred chHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999876432 33333456677888899998889999999999999854
No 144
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=86 Score=36.44 Aligned_cols=265 Identities=17% Similarity=0.187 Sum_probs=141.6
Q ss_pred HHHHHHHHh---hhhccccccchHHHHH---HHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-
Q 000797 938 VQTICLILT---KSINRQQRFQREAAAA---ALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1010 (1280)
Q Consensus 938 ~~~il~~l~---~~L~s~~~~~R~~a~a---flsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~- 1010 (1280)
++.++..+. +...-.++.+|-..+. .+-.|++-- .-..+..+.++.|..+|..++..|+.++++-+|.+..+
T Consensus 35 LpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEdc 113 (524)
T KOG4413|consen 35 LPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDC 113 (524)
T ss_pred hHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC
Confidence 444444432 3333456677766433 333344322 22355567889999999999999999999999988653
Q ss_pred ---hhhh----hHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHH---HHhccccccCChhhHHHH
Q 000797 1011 ---HIHQ----YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS---VRLRNLQVSMNVKMRRNA 1080 (1280)
Q Consensus 1011 ---~v~~----~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~---~~lr~~fede~~~vR~aA 1080 (1280)
.|.. -...+++.++..+-..|.+|...|...+++|-.. +.+++.++.+=. .++|.+--+-++-+|.--
T Consensus 114 DtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcndiaRvRV 191 (524)
T KOG4413|consen 114 DTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCNDIARVRV 191 (524)
T ss_pred chhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhhhHHHHHH
Confidence 2211 1234567777777777899999999999998643 233333222100 011111111223333333
Q ss_pred HHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-hccC-CCHHHHHHHHHHHHhhc------hhhhh-hHHhhhcccCCCC
Q 000797 1081 FAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYD-DDLSVRQACRNTLKQVA------PFMEI-GVYGIFNSHCFNS 1151 (1280)
Q Consensus 1081 i~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D-~~~~V~~ack~tL~~~a------~~L~w-~l~~l~~~~~~~~ 1151 (1280)
.++.=.+.... ....-+--...|+.++. -|+- ++.-|+..|-.-....+ .++.- .+-++.++--.+.
T Consensus 192 leLIieifSiS----pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGa 267 (524)
T KOG4413|consen 192 LELIIEIFSIS----PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGA 267 (524)
T ss_pred HHHHHHHHhcC----HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCC
Confidence 33333332211 11122222345566555 4555 56666666655444433 12222 2333333321111
Q ss_pred CCCCChHHH--HHHHHHHHHH---------hCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc
Q 000797 1152 DHRSDYETF--VRDLTRQFVQ---------HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1152 ~~~l~~~~f--~~~~~~~L~~---------~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
+ .=.|+.| +--+.|+|.+ .--+++-+++...+....+..+....+|+--+|.+..+..
T Consensus 268 d-sdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 268 D-SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred C-CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 1 1124333 1111222211 1112445577778889999999999999999999998765
No 145
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.30 E-value=28 Score=41.91 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 000797 1189 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1246 (1280)
Q Consensus 1189 S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL 1246 (1280)
+..|-+|+.|.+|+-.+.+.++++++ ..++..+.. .+++++..|+.-||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l-----~~~~~~l~~-~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL-----LQIFPLLVN-HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH-----HHHHHHHHH-HTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHH-HhCCCCcchhhhhhhhC
Confidence 56788999999999999999998885 778899999 89999999999999885
No 146
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.10 E-value=1.4e+02 Score=39.35 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=155.6
Q ss_pred ChhHHHHHHHHhhhhc-cccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcc---h
Q 000797 935 PKEVQTICLILTKSIN-RQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---I 1010 (1280)
Q Consensus 935 ~~~~~~il~~l~~~L~-s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~---~ 1010 (1280)
++....++......+. +..+.-|+.|...|.-.. ++.........++..|.+-..+.+..|-.+....|..+.. .
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe 563 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC-KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE 563 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh
Confidence 3333334433333332 344556777777776655 3333345556788888888899999999999998886642 1
Q ss_pred hh----hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCC----hhhHHHHHH
Q 000797 1011 HI----HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN----VKMRRNAFA 1082 (1280)
Q Consensus 1011 ~v----~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~----~~vR~aAi~ 1082 (1280)
.. .+-.|..+..++..=+ |+.|+-.+-..+.++++... ..+++.......+-.-++-+. ..+-..|+.
T Consensus 564 f~as~~skI~P~~i~lF~k~s~--DP~V~~~~qd~f~el~q~~~--~~g~m~e~~iPslisil~~~~~~~~~~l~~~aid 639 (1005)
T KOG2274|consen 564 FAASMESKICPLTINLFLKYSE--DPQVASLAQDLFEELLQIAA--NYGPMQERLIPSLISVLQLNADKAPAGLCAIAID 639 (1005)
T ss_pred hhhhhhcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHH--hhcchHHHHHHHHHHHHcCcccccCchhhHHHHH
Confidence 11 1222333444444333 34566777777777777433 344554444444444444444 888999999
Q ss_pred HHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCH-HHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHH
Q 000797 1083 AFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL-SVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFV 1161 (1280)
Q Consensus 1083 lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~-~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~ 1161 (1280)
.+--+.+.+.......+..+++..+....+|-.|... .-++.|-.++-. ..+.++.+++ ++++.+
T Consensus 640 vLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is------~~~eq~~t~~---~e~g~~----- 705 (1005)
T KOG2274|consen 640 VLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS------VTLEQLLTWH---DEPGHN----- 705 (1005)
T ss_pred HHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh------cCHHHHHhhc---cCCCcc-----
Confidence 9999999877777888889999999888888655532 223334333322 2455555543 343333
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcC--HHHHHHHHHHHhccCCChhhH
Q 000797 1162 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF--YTQVFGLLVVKLSQSADAIVR 1239 (1280)
Q Consensus 1162 ~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~--~e~~~~~L~~~Ll~Dpdp~VR 1239 (1280)
-||+++.+.-+=||.. -..|+.|+|-++-.+-...-.+++ .+++..|.+..|++-+.+.|-
T Consensus 706 ---------------~~yImqV~sqLLdp~~--sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsvi 768 (1005)
T KOG2274|consen 706 ---------------LWYIMQVLSQLLDPET--SDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVI 768 (1005)
T ss_pred ---------------HHHHHHHHHHHcCCcc--chhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHH
Confidence 2466666766666653 344556999888643322212222 234444444335555544443
Q ss_pred H
Q 000797 1240 A 1240 (1280)
Q Consensus 1240 ~ 1240 (1280)
.
T Consensus 769 Q 769 (1005)
T KOG2274|consen 769 Q 769 (1005)
T ss_pred H
Confidence 3
No 147
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.90 E-value=1.6e+02 Score=38.90 Aligned_cols=156 Identities=9% Similarity=0.073 Sum_probs=80.3
Q ss_pred CChhhHHHHHHHHHHHhhc------------cCCc-chHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh
Q 000797 1072 MNVKMRRNAFAAFGALSNF------------GVGS-QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1138 (1280)
Q Consensus 1072 e~~~vR~aAi~lfG~L~~~------------~~~~-~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w 1138 (1280)
....+..+|+.++....++ ..++ .........-...-.+..++..+++..++.--.++..++.+..-
T Consensus 395 ~~~~~~~~a~~vi~~~l~~D~~~l~~~~~~l~~~~~~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~ 474 (727)
T PF12726_consen 395 SNSSVSNSAMKVIRNALALDILSLCEESQALLRGKPLQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKF 474 (727)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhcccccc
Confidence 4566777777666665542 1111 11111122223444556678888888777776666666665555
Q ss_pred hHHhhhcccCCCCCCCCC----hHHHHHHHHHHH---HHhCcchHHHHHH------HHHhhhcCCChhHHHHHHHHHHHh
Q 000797 1139 GVYGIFNSHCFNSDHRSD----YETFVRDLTRQF---VQHFPSRIDSYMG------STIQAFEAPWPIIQANAIYFSSSI 1205 (1280)
Q Consensus 1139 ~l~~l~~~~~~~~~~~l~----~~~f~~~~~~~L---~~~~~~~~~~~l~------~~l~ylkS~~~~IR~aA~~fiG~l 1205 (1280)
..+. .+..+... ..+ ++.+..-+++.| ..-.|+.+..++. ..+..+=||..+++.+|.-+++..
T Consensus 475 ~~~~--~~~~~~~~-~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~ 551 (727)
T PF12726_consen 475 PPKK--EKDELDPA-KTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQA 551 (727)
T ss_pred CCcc--cccCcchH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHH
Confidence 2222 11111111 111 232322222222 2233445544443 244466789999999999999877
Q ss_pred hccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHH
Q 000797 1206 LCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1241 (1280)
Q Consensus 1206 ~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~ 1241 (1280)
... +.-.+++++++...|++.++..
T Consensus 552 ~d~-----------~~R~e~i~~ll~~~~~~tL~ai 576 (727)
T PF12726_consen 552 FDV-----------DGRLEAIQALLQSNFSPTLSAI 576 (727)
T ss_pred hcC-----------CcHHHHHHHHHHHhHHHHHHHH
Confidence 642 1223445554445666666654
No 148
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=83.75 E-value=5.6 Score=51.32 Aligned_cols=148 Identities=15% Similarity=0.100 Sum_probs=112.7
Q ss_pred HHHHHHHhhhhccccc----cchHHHHHHHHHhhhCCCchh--hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--
Q 000797 939 QTICLILTKSINRQQR----FQREAAAAALSEFVRYSGGFD--SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-- 1010 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~----~~R~~a~aflsEll~~~~~~~--~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-- 1010 (1280)
++.+....|.+-+... .+|-.=.-.++..++.-|... -....+.+.|.+++.-|++.||.-.++-+--+...
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 4445555555544433 455555667777777644421 12355889999999999999999999988755432
Q ss_pred -hhhhhHhHHHHHHHhhccCCCh---HHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHH
Q 000797 1011 -HIHQYATQVLSVILALLDDLDE---SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGA 1086 (1280)
Q Consensus 1011 -~v~~~~~~lL~all~~L~d~d~---~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~ 1086 (1280)
=..+|..+++|.+++.=.|.|. .|+..|+++|..+.+.+....+-+|-..+...|-|-+||..--||.-|++.=|.
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 3466778899999888777663 477899999999999999999999999999999999999999999999876443
No 149
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.36 E-value=1.7e+02 Score=38.89 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=117.5
Q ss_pred HHHhhC-ChhHHHHHHHHhhhhc------cccccch-----HHHHHHHHHhhhCCCchhhHHHH-HHHHHHhhhCCCChh
Q 000797 929 CVSIKR-PKEVQTICLILTKSIN------RQQRFQR-----EAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPT 995 (1280)
Q Consensus 929 ~l~~~~-~~~~~~il~~l~~~L~------s~~~~~R-----~~a~aflsEll~~~~~~~~l~~~-~i~~L~~~l~D~~~~ 995 (1280)
.++.++ ...+++++.++...++ +++...| .-+++.+.+.|.....-...++. +++.+.=-+++|-.-
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 445566 5689999999999998 5555555 22333333555433222344444 557777778999999
Q ss_pred HHHHHHhhccCCcch--hhhhhHhHHHHHHHhhcc-CCChHHHHHHHHHHHHHhccCCcc--cchhhhHHHHHHhccccc
Q 000797 996 VRGLCLRGLVQIPSI--HIHQYATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQV 1070 (1280)
Q Consensus 996 VR~laLrGLg~l~~~--~v~~~~~~lL~all~~L~-d~d~~V~~ea~~~L~~ll~~l~~~--~~~~~l~~l~~~lr~~fe 1070 (1280)
.|.-|.--++..+.. +-.....+++.+..++|. |.+=+|..+|..||+.++.....- .+++..+.++..+..+-.
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 999999888888743 333444677888889998 666689999999999999876532 377888888888877755
Q ss_pred c-CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-hcc
Q 000797 1071 S-MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIY 1115 (1280)
Q Consensus 1071 d-e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~ 1115 (1280)
. |++.+-..-=...+ +|+ ..-.||--++.++|+.-.+ |++
T Consensus 558 e~End~Lt~vme~iV~---~fs--eElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 558 EVENDDLTNVMEKIVC---KFS--EELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred hcchhHHHHHHHHHHH---HHH--HhhchhHHHHHHHHHHHHHHHHh
Confidence 4 33332211111111 222 2345666666666666555 555
No 150
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.09 E-value=32 Score=39.70 Aligned_cols=80 Identities=10% Similarity=0.097 Sum_probs=47.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHhhccC-------------------------chhhhhhcCHHHHHHHHHHHh--
Q 000797 1178 SYMGSTIQAFEAPWPIIQANAIYFSSSILCLC-------------------------DDQHILSLFYTQVFGLLVVKL-- 1230 (1280)
Q Consensus 1178 ~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~-------------------------~~~~~~~~~~e~~~~~L~~~L-- 1230 (1280)
.+..+-+--|.|+...+|+.-+ +|.+.+.. .+++...-|.+-+-..|+. |
T Consensus 174 ~~p~~kll~ft~~~s~vRr~Gv--agtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQy-Lp~ 250 (353)
T KOG2973|consen 174 RFPDQKLLPFTSEDSQVRRGGV--AGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQY-LPE 250 (353)
T ss_pred hhhHhhhhcccccchhhhccch--HHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhc-CCc
Confidence 4556666677778888998765 45555411 1222111122222223443 3
Q ss_pred --ccCCChhhHHHHHHHHHHHH--HHhhhccccc
Q 000797 1231 --SQSADAIVRATCSSSLGWLL--KSINSHSWRS 1260 (1280)
Q Consensus 1231 --l~Dpdp~VR~~Aa~aL~~l~--k~~~~~~~~~ 1260 (1280)
.+||||.||+.--+||..|. +..+-..|+-
T Consensus 251 dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~k 284 (353)
T KOG2973|consen 251 DKEREPDPDIRKMLLEALLLLCATRAGREVLRSK 284 (353)
T ss_pred cccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhc
Confidence 36999999999999999987 5555555544
No 151
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.69 E-value=11 Score=39.94 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch----hhhhhHhHHHHHHHhhccCCChH-HHHHHHHHHHHHhccC
Q 000797 975 DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDES-VQLTAVSCLLTILKSS 1049 (1280)
Q Consensus 975 ~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~----~v~~~~~~lL~all~~L~d~d~~-V~~ea~~~L~~ll~~l 1049 (1280)
...++..+..+.+.++++++.-|..++.=++-+... -...+..+-+..+++.|++.++. +...|+.+|.+|+..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 345567788888999999999999888866654322 34456688899999999997754 6688899999998766
Q ss_pred Ccc------cchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHH
Q 000797 1050 SKD------AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1111 (1280)
Q Consensus 1050 ~~~------~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1111 (1280)
.+. ...+.+..+...+-++.++ ..+...+..++..+... ......||..++...+.+++
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~-~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH-HPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH-CCccccchHHHHHHHHHHHh
Confidence 543 2345666666666666665 77889999999999873 34568899999999998876
No 152
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=82.39 E-value=8.6 Score=48.08 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCC
Q 000797 1074 VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1152 (1280)
Q Consensus 1074 ~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~ 1152 (1280)
..+++||-..|-.+++....-.-.+=...|.+-|||++ .|++..|-.++-.|++... ++. .++.-|-+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp~~~i~~~~lgai~NlV--mefs~~kskfl~------ 459 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDPEIMIMGITLGAICNLV--MEFSNLKSKFLR------ 459 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCcchhHHHHHHHHHHHHH--hhcccHHHHHHH------
Confidence 57888888888888763211000112356777888877 7999888877655555432 111 22211111
Q ss_pred CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhcc
Q 000797 1153 HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1232 (1280)
Q Consensus 1153 ~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~ 1232 (1280)
+-++.+...|+.++.+..|+.+.|++-.+.=+-+..+..+.+...-.+-+.. +-.
T Consensus 460 ------------------------~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~-l~n 514 (678)
T KOG1293|consen 460 ------------------------NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILD-LIN 514 (678)
T ss_pred ------------------------cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHH-HHh
Confidence 1245567789999999999999999977765544444433443333344555 778
Q ss_pred CCChhhHHHHHHHHHHHH
Q 000797 1233 SADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1233 Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
|||+.|++.+-+-|-+|-
T Consensus 515 d~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 515 DPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999998887776664
No 153
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=81.31 E-value=17 Score=45.50 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=110.3
Q ss_pred hhHhHHHHHHHhhccCC--ChHHHHHHHHHH---HHHhccCCcccchhhhHHHHHHhccccc--------cCChhhHHHH
Q 000797 1014 QYATQVLSVILALLDDL--DESVQLTAVSCL---LTILKSSSKDAVEPILLNLSVRLRNLQV--------SMNVKMRRNA 1080 (1280)
Q Consensus 1014 ~~~~~lL~all~~L~d~--d~~V~~ea~~~L---~~ll~~l~~~~~~~~l~~l~~~lr~~fe--------de~~~vR~aA 1080 (1280)
...+.++..+..||... +......+|.-+ ..++.......+..+...|-..+.|..+ .++..+|..|
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 34577788888888887 455666666777 8888888888888888888888999984 3678999999
Q ss_pred HHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHH
Q 000797 1081 FAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYET 1159 (1280)
Q Consensus 1081 i~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~ 1159 (1280)
-+.+|.|++.... .+.+. +..+--|.-.|.++.++|+.+-..||..+++.+.+ .- . + +.
T Consensus 395 Ye~lG~L~~~~p~----l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~-----~----~------~~ 454 (501)
T PF13001_consen 395 YETLGLLAKRAPS----LFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD-----D----E------DE 454 (501)
T ss_pred HHHHHHHHccCcc----ccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc-----c----h------hH
Confidence 9999999973222 22122 22222233357999999999999999999886655 21 0 0 00
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhcc
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL 1208 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~ 1208 (1280)
-.......+. ..|..+.....|-+|+.|+......
T Consensus 455 ~~~~~~~~l~--------------~~~~~~~~~~~R~~avk~an~~fpf 489 (501)
T PF13001_consen 455 QKRLLLELLL--------------LSYIQSEVRSCRYAAVKYANACFPF 489 (501)
T ss_pred HHHHHHHHHH--------------HhhccchhHHHHHHHHHHHHHhCCc
Confidence 1111111122 2344477788999999999877654
No 154
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.22 E-value=38 Score=39.60 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccch---hhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcc
Q 000797 1019 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE---PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1095 (1280)
Q Consensus 1019 lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~---~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~ 1095 (1280)
....++..++..|..+...|+..|..++..-+..... ..+..+..-++.....++.++...|+.+++.+.+. ...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chh
Confidence 4556667777778889999999999999876665554 45555555566666667778889999999999962 223
Q ss_pred hHHHHH-HHHHhHHHHHHhc-cCCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHh
Q 000797 1096 REAFLE-QIHAMLPRLILHI-YDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1171 (1280)
Q Consensus 1096 ~~~~~e-qv~~~LvpLLlHL-~D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~ 1171 (1280)
+..|.+ ...+.+++++.-. ...+....+. .+-..-|-=+|-- ...+-+.++ | ++..++..+...
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql-~Y~~ll~lWlLSF~~~~~~~~~~~---------~--~i~~L~~i~~~~ 251 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQL-QYQALLCLWLLSFEPEIAEELNKK---------Y--LIPLLADILKDS 251 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHH-HHHHHHHHHHHTTSHHHHHHHHTT---------S--HHHHHHHHHHH-
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhH-HHHHHHHHHHHhcCHHHHHHHhcc---------c--hHHHHHHHHHhc
Confidence 333333 3334444433200 1122222222 1221222111111 111222211 1 677888888888
Q ss_pred CcchHHHH-HHHHHhhhcCCChh
Q 000797 1172 FPSRIDSY-MGSTIQAFEAPWPI 1193 (1280)
Q Consensus 1172 ~~~~~~~~-l~~~l~ylkS~~~~ 1193 (1280)
-.+|+-.. ++...+.+..+...
T Consensus 252 ~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 252 IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -SHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccchHHHHHHHHHHHHHhccHHH
Confidence 89999887 44445577777665
No 155
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=9.4 Score=48.23 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=82.5
Q ss_pred Hhccc-cccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccC-CCHHHHHHHHHHHHhhchhhhhhHH
Q 000797 1064 RLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFMEIGVY 1141 (1280)
Q Consensus 1064 ~lr~~-fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~~L~w~l~ 1141 (1280)
++.|+ ..|.|++||.+|+.++|=+.- ++| +|+...+-+ |.+ -||-||-.+..||+.++.
T Consensus 558 ~lLh~aVsD~nDDVrRaAVialGFVl~------~dp--~~~~s~V~l----Lses~N~HVRyGaA~ALGIaCA------- 618 (929)
T KOG2062|consen 558 RLLHVAVSDVNDDVRRAAVIALGFVLF------RDP--EQLPSTVSL----LSESYNPHVRYGAAMALGIACA------- 618 (929)
T ss_pred HhhcccccccchHHHHHHHHHheeeEe------cCh--hhchHHHHH----HhhhcChhhhhhHHHHHhhhhc-------
Confidence 34445 789999999999999998773 222 233333332 333 389999999999998764
Q ss_pred hhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHH
Q 000797 1142 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ 1221 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~ 1221 (1280)
+.| + .+ |..|.+ +..++|-..+|+.|.+-.+.+...-+++.+.++ ..
T Consensus 619 --------GtG--~--~e-----Ai~lLe--------------pl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~ 665 (929)
T KOG2062|consen 619 --------GTG--L--KE-----AINLLE--------------PLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NG 665 (929)
T ss_pred --------CCC--c--HH-----HHHHHh--------------hhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HH
Confidence 222 1 11 111111 234578888999999999988876665555432 22
Q ss_pred HHHHHHHH-hccCCChhhHHHHHHHHHHHH
Q 000797 1222 VFGLLVVK-LSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1222 ~~~~L~~~-Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+.+-|... .-+.+|..+.--|.-|-|.+.
T Consensus 666 frk~l~kvI~dKhEd~~aK~GAilAqGild 695 (929)
T KOG2062|consen 666 FRKQLEKVINDKHEDGMAKFGAILAQGILD 695 (929)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Confidence 22222220 134567777777777777654
No 156
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=80.76 E-value=6.9 Score=50.47 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHhhh-CCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhcc--
Q 000797 975 DSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS-- 1048 (1280)
Q Consensus 975 ~~l~~~~i~~L~~~l-~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~-- 1048 (1280)
.-+.+..++.|.+-| ...+..+|-=.+-++|.+..+ .+..| +|-+-..|.|+++-|+..++.-|.++|+.
T Consensus 963 ~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 963 DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 455677788888777 445667777666677777665 55666 56677888999999999999999999963
Q ss_pred CCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCC
Q 000797 1049 SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1118 (1280)
Q Consensus 1049 l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~ 1118 (1280)
..|.+ .|.+|.---+-|+++++|.-|=..||++... ......+ ++.|-.+.|++|-.
T Consensus 1039 vKw~G------~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~-~~P~~f~------~~FVe~i~~ln~~~ 1095 (1529)
T KOG0413|consen 1039 VKWNG------ELFIRFMLALLDANEDIRNDAKFYISEVLQS-EEPNFFP------LNFVEYIIALNQAR 1095 (1529)
T ss_pred hhcch------hhHHHHHHHHcccCHHHHHHHHHHHHHHHhh-cCccchH------HHHHHHHHHHHHHH
Confidence 33332 3344444456689999999999999999972 2222222 46666677766543
No 157
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.46 E-value=2.6e+02 Score=38.98 Aligned_cols=293 Identities=14% Similarity=0.158 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHhcCCCCchhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHH
Q 000797 885 RAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAAL 964 (1280)
Q Consensus 885 ~~~l~Alk~ll~~~~~~~~~~~l~~~~~w~~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~afl 964 (1280)
.-.+.-||.+..|. +.|+.++ .-..++.-|+++++.. .+|+.++..-|+-.+..+
T Consensus 20 ~ell~rLk~l~~~l------~~~~qd~------~~~~~~~pl~~~l~~~-------------~~L~h~d~dvrllvacCv 74 (1266)
T KOG1525|consen 20 DELLKRLKKLANCL------ASLDQDN------LDLASLLPLADHLIKD-------------FLLKHKDKDVRLLVACCV 74 (1266)
T ss_pred HHHHHHHHHHHHHH------hhcccCc------hhHHHHHHHHHHHhhH-------------HHhcCCCcChhHHHHHHH
Confidence 34666777766433 2333222 4466677788877652 467789999999999999
Q ss_pred HHhhhC-CCc---hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhh---HhHH---HHHHHhhccCCChHH
Q 000797 965 SEFVRY-SGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY---ATQV---LSVILALLDDLDESV 1034 (1280)
Q Consensus 965 sEll~~-~~~---~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~---~~~l---L~all~~L~d~d~~V 1034 (1280)
+|+++- .+. ....++.+...+. -.++|||..-...-.+| .+++ -.+++--+.| ..+.
T Consensus 75 seilRi~aPeaPy~~~~lkdIf~~~~------------~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d-~~e~ 141 (1266)
T KOG1525|consen 75 SEILRIYAPEAPYTDEQLKDIFQLIL------------SQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED-CQEL 141 (1266)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHH------------HHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc-hHHH
Confidence 999983 333 2224444443332 23467777754311111 0111 1222222222 2345
Q ss_pred HHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-h
Q 000797 1035 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-H 1113 (1280)
Q Consensus 1035 ~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-H 1113 (1280)
+.+-....-.++..--.+.+-. |++++.. ...-.+.|...++-+++ |
T Consensus 142 ~~~~f~~f~d~~~~~~~~~v~~---------------------------~~~i~~~-----li~e~d~v~~e~L~~ll~~ 189 (1266)
T KOG1525|consen 142 VHELFRTFFDLARKGHPKKVFN---------------------------MLDIAIM-----LITEEDTVQSELLDVLLEN 189 (1266)
T ss_pred HHHHHHHHHHHHhccccHHHHH---------------------------HHHHHHH-----HHHhhccchHHHHHHHHHH
Confidence 5555555555553211111111 3333320 00011222222222222 4
Q ss_pred c----cCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCC-CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhc
Q 000797 1114 I----YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSD-HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE 1188 (1280)
Q Consensus 1114 L----~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~-~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylk 1188 (1280)
| .|..++-+.-+..-+.+||.-+.-.....+........ ..++-..++.++.-.|-.-.|+.+.-.+-+.-.-+.
T Consensus 190 lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~ 269 (1266)
T KOG1525|consen 190 LVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELL 269 (1266)
T ss_pred hccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4 34455555556667788887766643333333321111 233334455566666666778888888888888999
Q ss_pred CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1189 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1189 S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
|.+...|--|+..+|.|......+.- -....++.++.. -..|-++.||..+.+......
T Consensus 270 se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~-r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 270 SEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLG-RFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHH-HhccCChhhhhhHHHHhHHHH
Confidence 99999999999999999976543332 234668888888 589999999999887755443
No 158
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=80.45 E-value=12 Score=49.99 Aligned_cols=110 Identities=21% Similarity=0.157 Sum_probs=89.3
Q ss_pred HHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhH
Q 000797 980 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1059 (1280)
Q Consensus 980 ~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~ 1059 (1280)
+..+.+...+..+.+.||..+.|.+|.++..--......+++.++..+++.+.-+..++...+=.++..+...++.+|..
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 45678888899999999999999999887542233345677788888888776666666666666666666778889998
Q ss_pred HHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1060 NLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1060 ~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
=++.-|.+..+|..+.||.+|-..|..+..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999987
No 159
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.04 E-value=32 Score=40.76 Aligned_cols=187 Identities=19% Similarity=0.131 Sum_probs=105.0
Q ss_pred hHHHHHHHHhhhhcc-ccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcc----hh
Q 000797 937 EVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IH 1011 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s-~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~----~~ 1011 (1280)
.-..|++.+.|++.. ++|.-...++..|+.=+... ...+.+.++..+.++++|..+.||+.-++.+|.... ..
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 678899999999877 55655555554444322221 234557889999999999999999999999998754 44
Q ss_pred hhhhHhHHHHHHHhhccCCC----hH----HHHHHHHHHHHHhccCCcccc---------------hhhhHHHHHHhccc
Q 000797 1012 IHQYATQVLSVILALLDDLD----ES----VQLTAVSCLLTILKSSSKDAV---------------EPILLNLSVRLRNL 1068 (1280)
Q Consensus 1012 v~~~~~~lL~all~~L~d~d----~~----V~~ea~~~L~~ll~~l~~~~~---------------~~~l~~l~~~lr~~ 1068 (1280)
...+...++|.+++.+++.. .. .+..|...+. +.......+ .+++.+- .+
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-----kv 169 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA--LSSWKLDKIDSKNISFWSLALDPKPSFLLSE-----KV 169 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH--hccccchhhhhhhhhhhhhccCCCcchhcCH-----HH
Confidence 55556667777777776531 11 1122222222 110000000 0111110 11
Q ss_pred ccc-CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 000797 1069 QVS-MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1069 fed-e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1133 (1280)
+.+ -+++--...+.++-.+...-.............++++-++.|- -..+.||+.|..++.++.
T Consensus 170 yskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~-~~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 170 YSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSS-NVSWKVRRAALSALKKLY 234 (339)
T ss_pred HhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 222 2222333344444444432111111122566778888888762 237889999999998754
No 160
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=15 Score=45.20 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=64.7
Q ss_pred Hhccc-cccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCC-CHHHHHHHHHHHHhhchhhhhhHH
Q 000797 1064 RLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD-DLSVRQACRNTLKQVAPFMEIGVY 1141 (1280)
Q Consensus 1064 ~lr~~-fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~-~~~V~~ack~tL~~~a~~L~w~l~ 1141 (1280)
++.|. ..|.+++||.||+-++|=++= + +. ..++.-+--|.|. |+-||-....+|+..+.
T Consensus 555 ~lLh~avsD~nDDVrRAAViAlGfvc~--~--D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiaca------- 615 (926)
T COG5116 555 TLLHYAVSDGNDDVRRAAVIALGFVCC--D--DR--------DLLVGTVELLSESHNFHVRAGVAVALGIACA------- 615 (926)
T ss_pred hhheeecccCchHHHHHHHHheeeeEe--c--Cc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhc-------
Confidence 33444 789999999999999998762 1 11 2334444444444 89999999999987443
Q ss_pred hhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhh
Q 000797 1142 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQH 1213 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~ 1213 (1280)
+.| .....|+... ..+++...+|++|+.-.|.++-.-+++.
T Consensus 616 --------g~G-----~~~a~diL~~------------------L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 616 --------GTG-----DKVATDILEA------------------LMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred --------CCc-----cHHHHHHHHH------------------HhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 222 1122233332 3357888899999999999886544443
No 161
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=78.55 E-value=3.3 Score=52.08 Aligned_cols=192 Identities=16% Similarity=0.174 Sum_probs=121.1
Q ss_pred hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhh
Q 000797 937 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQY 1015 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~ 1015 (1280)
..+.|.-.+.++..+++..=|+.=.--+-.++.+- ..+.+.+++.+.+..++.|.|+++|...++.+..++.- --+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc-CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 44455556667777776666655444444444332 13455678999999999999999999999999888753 11123
Q ss_pred HhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcc
Q 000797 1016 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1095 (1280)
Q Consensus 1016 ~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~ 1095 (1280)
.-.++..+-..--|.+..++-.....|++|-..+....-..++..=- .| -..|.-..=|.+++-.|-+...+ -.
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~af--tr-alkdpf~paR~a~v~~l~at~~~---~~ 479 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAF--TR-ALKDPFVPARKAGVLALAATQEY---FD 479 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhh--hh-hhcCCCCCchhhhhHHHhhcccc---cc
Confidence 34456666555555556677777888888887765433222222211 12 23334455678887777766542 12
Q ss_pred hHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh
Q 000797 1096 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1138 (1280)
Q Consensus 1096 ~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w 1138 (1280)
......+|.-+++|+. .|++..||..+..++..+=.-+.-
T Consensus 480 ~~~va~kIlp~l~pl~---vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLT---VDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhhhhccccccccc---cCcccchhhHHHHHHHHHHhhhhh
Confidence 2334456666666665 699999999999988876554444
No 162
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.47 E-value=24 Score=44.54 Aligned_cols=214 Identities=18% Similarity=0.170 Sum_probs=134.0
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcc--------hhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPS--------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1052 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~--------~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~ 1052 (1280)
.=+.|-++|+-+|..||.-|+.-+-+.-+ +++....+..-.-+++.|.|.-+.|+-+|..++.++...- |.
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-We 253 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-WE 253 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HH
Confidence 33567789999999999999887776521 1333333444567888899888899999999999987542 22
Q ss_pred cc-hhhhHHHHHHhccccc-cCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHH
Q 000797 1053 AV-EPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLK 1130 (1280)
Q Consensus 1053 ~~-~~~l~~l~~~lr~~fe-de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~ 1130 (1280)
-+ ..++..+.-++..-.. |...+||.+.|.-+-.++. -+...+.++|++..+-|. |+|....||-|.-+-|.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~---np~sh~~le~~Lpal~~~---l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD---NPLSHPLLEQLLPALRYS---LHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc---CccchhHHHHHHHhcchh---hhccchhHHHHHHHHHH
Confidence 22 2444555544433322 2446999999998888875 456788889988777665 47999999988777666
Q ss_pred hh-----chhhhh-hHHhhhcccCCCCC---CC------------CChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcC
Q 000797 1131 QV-----APFMEI-GVYGIFNSHCFNSD---HR------------SDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA 1189 (1280)
Q Consensus 1131 ~~-----a~~L~w-~l~~l~~~~~~~~~---~~------------l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS 1189 (1280)
++ +.+... .+..++.+.+.+.. ++ ..-++.+..=|.+|++.+|-....|.. |+.+
T Consensus 328 ~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~----~l~~ 403 (1005)
T KOG1949|consen 328 KIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRFYQ----YLHE 403 (1005)
T ss_pred HHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHHHH----Hhcc
Confidence 54 344444 44444444321111 00 011556666677887777765555543 4444
Q ss_pred CC-hhHHHHHHHHHHHhh
Q 000797 1190 PW-PIIQANAIYFSSSIL 1206 (1280)
Q Consensus 1190 ~~-~~IR~aA~~fiG~l~ 1206 (1280)
-- .++.. +..+||+++
T Consensus 404 ~~~~~~~~-~~hlI~~fl 420 (1005)
T KOG1949|consen 404 HTATNIAK-LIHLIRHFL 420 (1005)
T ss_pred cchhhHHH-HHHHHHHHH
Confidence 33 22322 445555555
No 163
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=78.38 E-value=9.4 Score=37.51 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHH
Q 000797 1034 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1111 (1280)
Q Consensus 1034 V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1111 (1280)
-...++.+++.++.. ....+.++.++|+--|+.-++. +++|..|++....+.+.-..++-.++.+|+...++|..
T Consensus 31 ek~~~i~ai~~lI~~-~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 31 EKKRALRSIGFLIKL-MGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 468899999999985 4578999999999999999975 57999999999999987777888999999998888864
No 164
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=14 Score=42.47 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=93.9
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccch
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1055 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~ 1055 (1280)
+.++-.+.+.++++...|-+.|+..++.|... ++...-..++-.++.-=.+.+.-|.-.|-.+|..+......+.
T Consensus 128 ~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-- 205 (334)
T KOG2933|consen 128 HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-- 205 (334)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--
Confidence 33444555666777777777777777766532 2222112222222222222234477788888888887766543
Q ss_pred hhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhch
Q 000797 1056 PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAP 1134 (1280)
Q Consensus 1056 ~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~ 1134 (1280)
+...|.|...+-++.+|+.|.-.|-.... .-...+..+|...-+++-+- |+.|.=|.++.++++.+.....
T Consensus 206 -----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~---rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~ 277 (334)
T KOG2933|consen 206 -----LLRKLIPILQHSNPRVRAKAALCFSRCVI---RLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKE 277 (334)
T ss_pred -----HHHHHHHHHhhhchhhhhhhhccccccce---eccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHH
Confidence 23345667777888888887766655443 22255666776655555554 8999999999999999988887
Q ss_pred hhhh
Q 000797 1135 FMEI 1138 (1280)
Q Consensus 1135 ~L~w 1138 (1280)
-++|
T Consensus 278 v~~~ 281 (334)
T KOG2933|consen 278 VLKT 281 (334)
T ss_pred HHHH
Confidence 7777
No 165
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=77.80 E-value=7.2 Score=50.30 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC---cccch
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS---KDAVE 1055 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~---~~~~~ 1055 (1280)
..+.+.|.+++.|+|..+|..+--....++..+-..--|+++|.+++.+.+.+++-+..||.+|..+.+.+. ...++
T Consensus 89 ~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~ 168 (1005)
T KOG2274|consen 89 ALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVG 168 (1005)
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 446788888889999999999999888887654444458889999999999889999999999999987764 23455
Q ss_pred hhhHHHHHHhccccccCChhhHHHHH--HHHHHHhhc------cCCcchHHHHHHHHHhHHHHHHh---ccCCC
Q 000797 1056 PILLNLSVRLRNLQVSMNVKMRRNAF--AAFGALSNF------GVGSQREAFLEQIHAMLPRLILH---IYDDD 1118 (1280)
Q Consensus 1056 ~~l~~l~~~lr~~fede~~~vR~aAi--~lfG~L~~~------~~~~~~~~~~eqv~~~LvpLLlH---L~D~~ 1118 (1280)
+..+.=+.+++.|-...+...|..|+ -+|-+.... ........|..|+++...-.+.| +.|.+
T Consensus 169 ~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~ 242 (1005)
T KOG2274|consen 169 PVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGS 242 (1005)
T ss_pred ccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 66666667778888888888888888 445544431 11223457888888877777777 44553
No 166
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=77.10 E-value=2.8 Score=33.23 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1221 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1221 ~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
..+..|.. |++++++.||..|+.||++|-
T Consensus 12 g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQ-LLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHH-HTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 36778999 899999999999999999874
No 167
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=25 Score=45.36 Aligned_cols=192 Identities=15% Similarity=0.158 Sum_probs=119.7
Q ss_pred hhhccc-cccchHHHHHHHHHhhhCC-Cc--hhhHHHHHHHHHHhhhCCC-ChhHHHHHHhhccCCcch------hhhhh
Q 000797 947 KSINRQ-QRFQREAAAAALSEFVRYS-GG--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI------HIHQY 1015 (1280)
Q Consensus 947 ~~L~s~-~~~~R~~a~aflsEll~~~-~~--~~~l~~~~i~~L~~~l~D~-~~~VR~laLrGLg~l~~~------~v~~~ 1015 (1280)
..|+.. ++.+.+-|+.=+.|.|--- .+ .....+.++++|..-|+++ |+.+-.+|.|+|.+|... -+-.
T Consensus 174 ~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~- 252 (1051)
T KOG0168|consen 174 QGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD- 252 (1051)
T ss_pred HhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec-
Confidence 444443 7778777777777766532 22 3456799999999999885 889999999999988532 1111
Q ss_pred HhHHHHHHHhhccCCC-hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCc
Q 000797 1016 ATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1094 (1280)
Q Consensus 1016 ~~~lL~all~~L~d~d-~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~ 1094 (1280)
.-.+|+++.-|.--. -+|+-.++.+|.+|-+.=...-+..--+..+..-..|| +-.+...|+..-...++.-...
T Consensus 253 -~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 253 -EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred -ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCc
Confidence 234777777765432 46888888888888765443333333344444444555 5678888998888888754443
Q ss_pred chHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhch-hhhh--hHHhhhccc
Q 000797 1095 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP-FMEI--GVYGIFNSH 1147 (1280)
Q Consensus 1095 ~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~-~L~w--~l~~l~~~~ 1147 (1280)
.+. |.-.++-.|-|++- -.+..+......+|.+++- +..- ++.+++...
T Consensus 329 ~f~-~v~ealPlL~~lLs---~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d 380 (1051)
T KOG0168|consen 329 EFH-FVMEALPLLTPLLS---YQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHD 380 (1051)
T ss_pred cch-HHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHhcccChHHHHHHhchh
Confidence 333 44444444555444 4445555555556666653 3333 566666544
No 168
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.30 E-value=3.4e+02 Score=38.05 Aligned_cols=281 Identities=15% Similarity=0.110 Sum_probs=173.8
Q ss_pred chhhHHHHHHHHHHHHHhhCCh--hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCC
Q 000797 915 DKEKWINLIGDVAGCVSIKRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDE 992 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~--~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~ 992 (1280)
+..--.+...+++..++.+++- -.-+.+..++..+.++...-|..|+-.+++++.-.+.... .+.+-.....++.|.
T Consensus 789 s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~-~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 789 SRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS-RPDVQEAVHGRLNDS 867 (1692)
T ss_pred CccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc-CHHHHHHHHHhhccc
Confidence 3334455566677777766553 5778899999999999999999999999998875433111 133456778899999
Q ss_pred ChhHHHHHHhhccCC-cch--hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccc
Q 000797 993 SPTVRGLCLRGLVQI-PSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1069 (1280)
Q Consensus 993 ~~~VR~laLrGLg~l-~~~--~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~f 1069 (1280)
+..||-+|+.=+|.- ..+ -+.+| -..+.+++-|+.-.|+..++..++++-..-. ++ +..+.+|-++-.-.
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qy----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~p--df-~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQY----YDQIIERILDTGVSVRKRVIKILRDICEETP--DF-SKIVDMCAKMLRRV 940 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHH----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCC--Ch-hhHHHHHHHHHHHh
Confidence 999999999999943 222 33444 4556778888788899999999999987532 33 45678888888888
Q ss_pred ccCChhhHHHHHHHHHHHhhcc--CC-cchHHHHHHH------H--------HhHHHHHHhc---c---CCCHHHHHHHH
Q 000797 1070 VSMNVKMRRNAFAAFGALSNFG--VG-SQREAFLEQI------H--------AMLPRLILHI---Y---DDDLSVRQACR 1126 (1280)
Q Consensus 1070 ede~~~vR~aAi~lfG~L~~~~--~~-~~~~~~~eqv------~--------~~LvpLLlHL---~---D~~~~V~~ack 1126 (1280)
+||...|...+...|-.+. |. .+ .++..+...+ . ..+..|+.|+ . --...|-..+.
T Consensus 941 ~DEEg~I~kLv~etf~klW-F~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~ 1019 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLW-FTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVAL 1019 (1692)
T ss_pred ccchhHHHHHHHHHHHHHh-ccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 9999999999999999987 42 12 2222221111 0 1112222221 0 11223333344
Q ss_pred HHHHhhchhhhh-hHHhhhccc--C-CCCCCCCChHHHHHHHHHHHHHhCcchHH-HHHHHHHhhhcCCChhHHHHHHHH
Q 000797 1127 NTLKQVAPFMEI-GVYGIFNSH--C-FNSDHRSDYETFVRDLTRQFVQHFPSRID-SYMGSTIQAFEAPWPIIQANAIYF 1201 (1280)
Q Consensus 1127 ~tL~~~a~~L~w-~l~~l~~~~--~-~~~~~~l~~~~f~~~~~~~L~~~~~~~~~-~~l~~~l~ylkS~~~~IR~aA~~f 1201 (1280)
.+..+...++.- ...++..-. . ..+...-.+-.++.. .-.|..-.|.... .|+.+..+|++|. ..- ++++.|
T Consensus 1020 ~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lst-L~~FskirP~Llt~khv~tL~PYL~s~-~~t-~~~~~f 1096 (1692)
T KOG1020|consen 1020 AKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLST-LFVFSKIRPQLLTKKHVITLQPYLTSK-AST-IEEAQF 1096 (1692)
T ss_pred hhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHH-HHHHHhcCchhccHHHHHHhhhHHhcc-ccc-hHHHHH
Confidence 444444443333 222211110 0 011111122234433 3445677888888 8999999999998 222 346677
Q ss_pred HHHhhc
Q 000797 1202 SSSILC 1207 (1280)
Q Consensus 1202 iG~l~~ 1207 (1280)
+=++++
T Consensus 1097 l~~vi~ 1102 (1692)
T KOG1020|consen 1097 LYYVIQ 1102 (1692)
T ss_pred HHHHHH
Confidence 766664
No 169
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=76.06 E-value=7.9 Score=46.58 Aligned_cols=140 Identities=20% Similarity=0.172 Sum_probs=87.9
Q ss_pred CChhHHHHHHhhccCCcch----hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc---------cchhhh
Q 000797 992 ESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD---------AVEPIL 1058 (1280)
Q Consensus 992 ~~~~VR~laLrGLg~l~~~----~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~---------~~~~~l 1058 (1280)
.|..||..|+|++|-.-.| ....+....-.+++..|.|+.=.++..|..++++|-+.+-.. .++..+
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l 482 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL 482 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH
Confidence 4667999999999977554 455667777888999999877778888999998885433211 112222
Q ss_pred HHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh-ccCCCHHHHHHHHHHHHh
Q 000797 1059 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1059 ~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ack~tL~~ 1131 (1280)
+.=..+.-..=+-++++||..|++.+|.+..+...-.+-.+.+-+-..+..++-. ....+..|+-.+.++++.
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gN 556 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGN 556 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHH
Confidence 2223333444556889999999999999997543223333333333333333332 233345566555555554
No 170
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.87 E-value=77 Score=36.61 Aligned_cols=220 Identities=12% Similarity=0.099 Sum_probs=114.6
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHhhCC--h-hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHH
Q 000797 909 RDGEQNDKEKWINLIGDVAGCVSIKRP--K-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEAL 985 (1280)
Q Consensus 909 ~~~~w~~~~~~~~gV~lLar~l~~~~~--~-~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L 985 (1280)
.+..|.+++...-+-..+...+..... . ...-+.+.+.|.+.+. ...++++.+= .-++ |.......+...
T Consensus 12 ~~~~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~-~~~~~t~~gr--~~l~-P~~~~~~~~~~~--- 84 (282)
T PF10521_consen 12 PEDPWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKS-KNPRITSSGR--KGLR-PKLGFSFDDDEL--- 84 (282)
T ss_pred CCCCCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCC-CCcccccccc--cccC-CCCccccccccc---
Confidence 446787777666655544443311222 1 3445566777777766 3334444332 1111 100000000000
Q ss_pred HhhhCCCChhHH----HHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCccc--------
Q 000797 986 CRHVSDESPTVR----GLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA-------- 1053 (1280)
Q Consensus 986 ~~~l~D~~~~VR----~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~-------- 1053 (1280)
..--+..++.++ .+++. .++....+.++-+-++|+++..+||.+..+...++..|..++..+....
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tG 162 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTG 162 (282)
T ss_pred ccCCcccCCcccHHHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcC
Confidence 111122223222 22232 3444447778889999999999999999999999999999998776544
Q ss_pred chhhhHHHHHHhcccc-----ccCChhhHHHHHHHHHHHhhc---cCCcchHHHHHH-HHHhHHHHHHhccC-CCHHHHH
Q 000797 1054 VEPILLNLSVRLRNLQ-----VSMNVKMRRNAFAAFGALSNF---GVGSQREAFLEQ-IHAMLPRLILHIYD-DDLSVRQ 1123 (1280)
Q Consensus 1054 ~~~~l~~l~~~lr~~f-----ede~~~vR~aAi~lfG~L~~~---~~~~~~~~~~eq-v~~~LvpLLlHL~D-~~~~V~~ 1123 (1280)
+..++.+......-++ +++...+=..|+.++-.|++. ..+..+.....+ +...+..-+.|-.+ +.+.++.
T Consensus 163 l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 163 LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 2333333222222221 256666667777777777552 122223333333 33445555656554 4566666
Q ss_pred HHHHHHHhhchhhh
Q 000797 1124 ACRNTLKQVAPFME 1137 (1280)
Q Consensus 1124 ack~tL~~~a~~L~ 1137 (1280)
.--..+..+..-||
T Consensus 243 ~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 243 VLLQQLPPIIDELG 256 (282)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555444333
No 171
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=75.38 E-value=72 Score=38.44 Aligned_cols=179 Identities=18% Similarity=0.159 Sum_probs=81.0
Q ss_pred cccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhhHhHHHHHHHhhccCC
Q 000797 953 QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDL 1030 (1280)
Q Consensus 953 ~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~~~~lL~all~~L~d~ 1030 (1280)
++.+|.-|.-+.-.++.-..+.......++..+.+-..+++...|.+|+.-|..++.. ++-.. ..-+..+++.+-|.
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~-~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAE-CGGIRVLLRALIDG 159 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHH-cCCHHHHHHHHHhc
Confidence 3455666666666666543333333444555555555666666777777766666532 11000 11122222222221
Q ss_pred ChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc------CCh--hhHHHHHHHHHHHhhccCCcchHHHHHH
Q 000797 1031 DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS------MNV--KMRRNAFAAFGALSNFGVGSQREAFLEQ 1102 (1280)
Q Consensus 1031 d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed------e~~--~vR~aAi~lfG~L~~~~~~~~~~~~~eq 1102 (1280)
.-++.-..+.++-.+++.-..+..-..-..+-.-+-||-|. ++. +.-.++..++..+.+...|--....-+
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~- 238 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND- 238 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC-
Confidence 22233333333333333322221111111232333344333 122 223344455566666444422111111
Q ss_pred HHHhHHHHHHhccCCCHHHHHHHHHHHHhhch
Q 000797 1103 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1134 (1280)
Q Consensus 1103 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1134 (1280)
.+.+-.|+-.|+=+++++|+.--+.|+.+-.
T Consensus 239 -~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 -FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred -chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1334445556677899999988888777643
No 172
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.72 E-value=11 Score=46.50 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCcc---hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhcc---C
Q 000797 1160 FVRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ---S 1233 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~---~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~---D 1233 (1280)
|+..+..|.+++.|+ -+.-++...+..+.|+...+|-.....+..+.....+ +| |.+++.|...|.+ |
T Consensus 70 fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-----ID-e~l~N~L~ekl~~R~~D 143 (885)
T COG5218 70 FLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-----ID-EVLANGLLEKLSERLFD 143 (885)
T ss_pred HHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-----HH-HHHHHHHHHHHHHHHhc
Confidence 555556666666665 3445666678889999999999988888777654332 22 6667766654543 9
Q ss_pred CChhhHHHHHHHHHHHHH
Q 000797 1234 ADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1234 pdp~VR~~Aa~aL~~l~k 1251 (1280)
.+|.||.-|.-+|.+++.
T Consensus 144 RE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 144 REKAVRREAVKVLCYYQE 161 (885)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 999999999999999984
No 173
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.48 E-value=6.6 Score=45.03 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=46.2
Q ss_pred HHHHHhhhcCCChhHHHHHHH-HHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1180 MGSTIQAFEAPWPIIQANAIY-FSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1180 l~~~l~ylkS~~~~IR~aA~~-fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+...+.|++|++|++|.+|+. .+|+..+ +-+-+ ..+.+..+.++.. |.+|++| -.-|++||.++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~-~~~~~~~lk~l~q-L~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSL-SKYSEALLKDLTQ-LLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhh-ccchhhhHHHHHH-HccCccc--ccHHHHHHHHHH
Confidence 345788999999999999993 3455555 22222 2345778888888 8999999 555667776655
No 174
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.54 E-value=25 Score=44.33 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=73.7
Q ss_pred hccccccCChhhHHHHHHHHHHHhh-ccCCc-chHHHHHHHHHhHHHHHH-hccCCCHHHHHHHHHHHHhhchhhhhhHH
Q 000797 1065 LRNLQVSMNVKMRRNAFAAFGALSN-FGVGS-QREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVY 1141 (1280)
Q Consensus 1065 lr~~fede~~~vR~aAi~lfG~L~~-~~~~~-~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~w~l~ 1141 (1280)
+-.+++.|+..+|++-+.+.|.+.. +.... -.+.+. |-.+.|+-|+. .++|.+|-+|.++-..+..+.
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~-~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kif-------- 374 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYK-QKLNDLVGLLVERLSDTYPYTRTKALQVLEKIF-------- 374 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--------
Confidence 3456788999999999999999975 32222 122233 34556666665 899999999998755544432
Q ss_pred hhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhc
Q 000797 1142 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC 1207 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~ 1207 (1280)
+. -.+++++-+.++.-+..-+++-...+|++|+.+...++-
T Consensus 375 ---dl----------------------~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 375 ---DL----------------------NSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ---hC----------------------cccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 11 123455555666666777888888999999988766553
No 175
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.44 E-value=32 Score=43.80 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCC-ChHHHHHHHHHHHHHhccCCc
Q 000797 974 FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSK 1051 (1280)
Q Consensus 974 ~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~-d~~V~~ea~~~L~~ll~~l~~ 1051 (1280)
.+.+.+.+++.|...++|++..+...+|++++.++.- ++.--.+.++|.+....... +-.|...++-++..+++.+|.
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999998865 55555577888876663332 346888888899999988776
Q ss_pred ccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHH
Q 000797 1052 DAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQAC 1125 (1280)
Q Consensus 1052 ~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ac 1125 (1280)
-.+-..++.+...+ .-.++.+-..-..+|-.+.-.-.+ .++.+-+||+-.++||. ..+-..+.+=|
T Consensus 463 ~~v~d~~lpi~~~~----~~~dp~iv~~~~~i~~~l~~~~~~-g~ev~~~~VlPlli~ls---~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 463 AAVLDELLPILKCI----KTRDPAIVMGFLRIYEALALIIYS-GVEVMAENVLPLLIPLS---VAPSLNGEQYN 528 (700)
T ss_pred HHhHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHhhccc-ceeeehhhhhhhhhhhh---hcccccHHHHH
Confidence 54444433332222 224566767777777777641111 14555566655555554 33434555443
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=71.35 E-value=1.3e+02 Score=35.80 Aligned_cols=179 Identities=9% Similarity=0.171 Sum_probs=101.3
Q ss_pred cccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHh---HHHHHHhccCCCHHHHHHHHHHHHhhchhh---hh-hHH
Q 000797 1069 QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM---LPRLILHIYDDDLSVRQACRNTLKQVAPFM---EI-GVY 1141 (1280)
Q Consensus 1069 fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~---LvpLLlHL~D~~~~V~~ack~tL~~~a~~L---~w-~l~ 1141 (1280)
+..=+.+.|..+..+|+.+.+...+....|..+-+.+. +...|+.--| +++++-.|..-|+.|...= +. .-.
T Consensus 85 L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l~~~iL~~ 163 (335)
T PF08569_consen 85 LPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESLAKIILYS 163 (335)
T ss_dssp GGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHHHHHHHTS
T ss_pred hhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHHHHHHhCc
Confidence 44445679999999999999865554433555555444 3333333222 7788889999999988542 11 111
Q ss_pred hhhcccCCCCCCCCChHHHHH--HHHHHHHHhCcchH--------HHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCch
Q 000797 1142 GIFNSHCFNSDHRSDYETFVR--DLTRQFVQHFPSRI--------DSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD 1211 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~--~~~~~L~~~~~~~~--------~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~ 1211 (1280)
+.|.+. ++--+..+|+..-. .+.+-+...++..+ ++|...--..+.|+.--.|+-|..++|.++-.-..
T Consensus 164 ~~f~~f-f~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 164 ECFWKF-FKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp GGGGGH-HHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHH-HHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 122211 01011223321111 22344444455444 44445556678999999999999999999954332
Q ss_pred hh--hhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1212 QH--ILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1212 ~~--~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
-. ...++...-....+. |++|+...||--|=--+..+.
T Consensus 243 ~~vm~~yi~~~~nLkl~M~-lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMN-LLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHH-HhcCcchhhhHHHHHHHHHHH
Confidence 22 244666666777777 899999999998865555443
No 177
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.90 E-value=2.2e+02 Score=33.54 Aligned_cols=196 Identities=16% Similarity=0.119 Sum_probs=104.1
Q ss_pred HHHHHhhccCC-ChHHHHHHHHHHHHHhc------cCC-cccchhhhHHHHHHhcccccc-CChhhHHHH---HHHHHHH
Q 000797 1020 LSVILALLDDL-DESVQLTAVSCLLTILK------SSS-KDAVEPILLNLSVRLRNLQVS-MNVKMRRNA---FAAFGAL 1087 (1280)
Q Consensus 1020 L~all~~L~d~-d~~V~~ea~~~L~~ll~------~l~-~~~~~~~l~~l~~~lr~~fed-e~~~vR~aA---i~lfG~L 1087 (1280)
+.++.+.+... |+++..++..+|+.+-- .+. ..++.. +..+++| ....+|..+ .+++.++
T Consensus 243 l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t--------l~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 243 LTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDT--------LLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHH--------HHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 44444444332 35566666666666521 111 112222 1235566 556788554 4555565
Q ss_pred hhccCCcchHH-HHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHH
Q 000797 1088 SNFGVGSQREA-FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLT 1165 (1280)
Q Consensus 1088 ~~~~~~~~~~~-~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~ 1165 (1280)
+. ..+-+.. ...+....++.+++.-+| +|.|.++...+++.++ |+. .=.+.+- +.| ..++.
T Consensus 315 AG--~DsvKs~IV~~gg~~~ii~l~~~h~~-~p~Vi~~~~a~i~~l~--LR~pdhsa~~i----e~G--------~a~~a 377 (461)
T KOG4199|consen 315 AG--SDSVKSTIVEKGGLDKIITLALRHSD-DPLVIQEVMAIISILC--LRSPDHSAKAI----EAG--------AADLA 377 (461)
T ss_pred hC--CCchHHHHHHhcChHHHHHHHHHcCC-ChHHHHHHHHHHHHHH--hcCcchHHHHH----hcc--------hHHHH
Confidence 53 2222333 445577888888884333 4577766655555443 111 1111110 001 12334
Q ss_pred HHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCch--hhhhhcCHHHHHHHHHHHhccCCChhhHHHHH
Q 000797 1166 RQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD--QHILSLFYTQVFGLLVVKLSQSADAIVRATCS 1243 (1280)
Q Consensus 1166 ~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~--~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa 1243 (1280)
-.-|+.||-+ ..++++|++.|--++-+... ..+...+.| .|++ +-+-..+.++..|.
T Consensus 378 vqAmkahP~~----------------a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE----~Li~-~A~~~h~tce~~ak 436 (461)
T KOG4199|consen 378 VQAMKAHPVA----------------AQVQRNACNMIRNIVVRSAENRTILLANGIE----KLIR-TAKANHETCEAAAK 436 (461)
T ss_pred HHHHHhCcHH----------------HHHHHHHHHHHHHHHHhhhhccchHHhccHH----HHHH-HHHhcCccHHHHHH
Confidence 4445555543 34889999999877754332 222333444 3455 55668999999999
Q ss_pred HHHHHHH-HHhhhcccccc
Q 000797 1244 SSLGWLL-KSINSHSWRST 1261 (1280)
Q Consensus 1244 ~aL~~l~-k~~~~~~~~~~ 1261 (1280)
.||.-|+ ..-+.-.|.+.
T Consensus 437 aALRDLGc~v~lre~wtg~ 455 (461)
T KOG4199|consen 437 AALRDLGCDVYLREEWTGA 455 (461)
T ss_pred HHHHhcCcchhhHHHhccc
Confidence 9998887 33344456553
No 178
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=69.55 E-value=96 Score=37.56 Aligned_cols=265 Identities=14% Similarity=0.055 Sum_probs=127.8
Q ss_pred HHHHHHHHhhhhccccccc--hHHHHHHHHHhhhCCCchhhHHHHHHHHHHhh-hCCCChhHHHHHHhhccCCcch--h-
Q 000797 938 VQTICLILTKSINRQQRFQ--REAAAAALSEFVRYSGGFDSLLEQMVEALCRH-VSDESPTVRGLCLRGLVQIPSI--H- 1011 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~~~~--R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~-l~D~~~~VR~laLrGLg~l~~~--~- 1011 (1280)
...=+..+++++++++-.- |+-|.-.+-+.+-........... +.++.+- -..+-+...+.++--|+++-.| .
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 4456777788888887544 666665555554432221111111 1111111 1122233344444445555433 1
Q ss_pred -hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccch-hhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1012 -IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1012 -v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~-~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
.+.-....|.+++--...+|+.+..-+..+|++++-+-....-. -+-..++.-|+|+--..++-+|.-|--+..-++.
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 11122233555555555567778888888888887553333222 2223444555555333455566655554444442
Q ss_pred ccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Q 000797 1090 FGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFV 1169 (1280)
Q Consensus 1090 ~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~ 1169 (1280)
-++-+++|++.- ||.-+-|++.. + +. +.|.+|--++--
T Consensus 337 ------------------------~KE~E~~VrkS~--TlaLVEPlva~--------~--DP------~~FARD~hd~aQ 374 (832)
T KOG3678|consen 337 ------------------------NKEVEREVRKSG--TLALVEPLVAS--------L--DP------GRFARDAHDYAQ 374 (832)
T ss_pred ------------------------hhhhhHHHhhcc--chhhhhhhhhc--------c--Cc------chhhhhhhhhhc
Confidence 234455555432 22222233222 0 01 123333333222
Q ss_pred HhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHH--HhhccCchhhhhhcCHH-HHHHHHHHHhccCCChhhHHHHHHHH
Q 000797 1170 QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS--SILCLCDDQHILSLFYT-QVFGLLVVKLSQSADAIVRATCSSSL 1246 (1280)
Q Consensus 1170 ~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG--~l~~~~~~~~~~~~~~e-~~~~~L~~~Ll~Dpdp~VR~~Aa~aL 1246 (1280)
++-..-+.-.+..++|...+-|+-++...- ..++.+- .-..+-.| -.+.+|.+ +-..||..-..+|.+||
T Consensus 375 ----G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q--~K~kVFseIGAIQaLKe-vaSS~d~vaakfAseAL 447 (832)
T KOG3678|consen 375 ----GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQ--GKTKVFSEIGAIQALKE-VASSPDEVAAKFASEAL 447 (832)
T ss_pred ----cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHH-HhcCchHHHHHHHHHHH
Confidence 222233444566777776666665554331 1111100 00001111 14566777 67799999999999999
Q ss_pred HHHHHH
Q 000797 1247 GWLLKS 1252 (1280)
Q Consensus 1247 ~~l~k~ 1252 (1280)
-.+++-
T Consensus 448 tviGEE 453 (832)
T KOG3678|consen 448 TVIGEE 453 (832)
T ss_pred HHhccc
Confidence 999853
No 179
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=69.16 E-value=72 Score=37.39 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh
Q 000797 1034 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1113 (1280)
Q Consensus 1034 V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH 1113 (1280)
|=..|+.+-..|++.++.+.+..-+.=...-|.|||..-+-.||..-+.+|-.-.- .-+ ..++-.+...+..++-=
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l-pL~---~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL-PLG---PALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-Ccc---HHHHHHHHHHHHHhccc
Confidence 66788888889999998888777666667788999999999999999999988542 112 24444444555555556
Q ss_pred ccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh
Q 000797 1114 IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1193 (1280)
Q Consensus 1114 L~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1193 (1280)
|.|++.++-..+-..+..+..- ++.+.|+..+|.+++. .+.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~-------------------v~~~~F~~~lwl~ii~--------------------sp~ 187 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEA-------------------VGDKYFWQCLWLCIIT--------------------SPS 187 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHh-------------------cChhHHHHHHHHHHhc--------------------Ccc
Confidence 8899999888776666554321 1112477777777764 234
Q ss_pred HHHHHHHHHHHhhccCc----------hhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHH
Q 000797 1194 IQANAIYFSSSILCLCD----------DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSS 1244 (1280)
Q Consensus 1194 IR~aA~~fiG~l~~~~~----------~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~ 1244 (1280)
+|..|-.|+-.-..... .+.+-..+.+.+++++.. .++|++..|++.+-.
T Consensus 188 ~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~-~L~D~~iLVqR~~LD 247 (307)
T PF04118_consen 188 RRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCA-CLEDENILVQRGFLD 247 (307)
T ss_pred hhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHH-HhCCchHHHHHHHHH
Confidence 45555544432222111 111222456779999999 799999999985533
No 180
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.07 E-value=11 Score=44.34 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=51.6
Q ss_pred HHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1183 TIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1183 ~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
.+.|++++...+|..|++.||-..++-|.-+..-++.. ....|...+.+|.+-.||.+|--|++-+-+
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-~L~~Ll~~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG-ALSKLLKILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-cHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 56699999999999999999999998886553223322 233344436789999999999999887764
No 181
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.61 E-value=11 Score=37.64 Aligned_cols=78 Identities=12% Similarity=-0.037 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHhhh-cCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1173 PSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1173 ~~~~~~~l~~~l~yl-kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
.+.-...+...+.++ +|..+..-+-|+.=||.+++++|.-. .-+..-.+-..++. |..+|||.||.-|-.|++.+.-
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NIIEKLGAKERVME-LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 333344566666677 55567778888888999999987321 11222223345666 7889999999999999887754
Q ss_pred H
Q 000797 1252 S 1252 (1280)
Q Consensus 1252 ~ 1252 (1280)
.
T Consensus 116 ~ 116 (119)
T PF11698_consen 116 N 116 (119)
T ss_dssp H
T ss_pred h
Confidence 3
No 182
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=67.33 E-value=1.4e+02 Score=34.75 Aligned_cols=90 Identities=11% Similarity=-0.029 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh-HHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCCh
Q 000797 1158 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI-IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1236 (1280)
Q Consensus 1158 ~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~-IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp 1236 (1280)
.+|+.+=.+-|.+.+ + ..+.+...|+++..++ +=+.|..=||+++..+|. ...-++.-.+-+.+.. |...|||
T Consensus 340 ~dFWs~N~d~l~kdn---y-~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~k~~im~-L~nh~d~ 413 (432)
T COG5231 340 KDFWSTNLDMLIKDN---Y-EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-INAVLSKYGVKEIIMN-LINHDDD 413 (432)
T ss_pred cCchhhhHHHHhhhh---H-HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-HHHHHHHhhhHHHHHH-HhcCCCc
Confidence 445544444444322 2 2456678899999888 667788889999988773 2233555666677888 8889999
Q ss_pred hhHHHHHHHHHHHHHHh
Q 000797 1237 IVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1237 ~VR~~Aa~aL~~l~k~~ 1253 (1280)
.||--|-+|+..+-.+.
T Consensus 414 ~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 414 DVKFEALQALQTCISSE 430 (432)
T ss_pred hhhHHHHHHHHHHHhhh
Confidence 99999999988765443
No 183
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=66.23 E-value=19 Score=38.78 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhH
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1239 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR 1239 (1280)
....+|..+....+.....+ .....+.+|+..-+|++|..+....... ..+.+.++..+.. ++.|++..||
T Consensus 88 ~~D~~~~~~~~~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~-~~~d~~~~Vq 158 (197)
T cd06561 88 LVDSLCANLLGKLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIER-LLHDEEYFVQ 158 (197)
T ss_pred HHHHHHHHHHHHHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHH-hCCCHHHHHH
Confidence 33445555555444333333 5566799999999999887665444433 2345777888888 8999999999
Q ss_pred HHHHHHHHHHHHH
Q 000797 1240 ATCSSSLGWLLKS 1252 (1280)
Q Consensus 1240 ~~Aa~aL~~l~k~ 1252 (1280)
...+-+|..+++.
T Consensus 159 kav~w~L~~~~~~ 171 (197)
T cd06561 159 KAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998876
No 184
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.13 E-value=32 Score=41.08 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=101.1
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhh
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1057 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~ 1057 (1280)
.+.-|...+++.|..||.=|++|+-.+-.. +...+.-.+++.+....-|.|..|+-.+...+..++..+..+.++++
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 345567778999999999999999866432 44445567788888888888899999999999999888888889999
Q ss_pred hHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH
Q 000797 1058 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1112 (1280)
Q Consensus 1058 l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl 1112 (1280)
..-++..++.-+.+-.+++|.-|+.-+--++.+... ..-....++..+..-++-
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p-~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD-TFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888874421 222222335555555444
No 185
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.05 E-value=2.3e+02 Score=31.80 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=94.0
Q ss_pred chhhHHHHHHHHHHHHHhhCC--hhHHHHHHHHhhh----hccccccc--hHHHHHHHHHhhhCCCchhhHHHHHHHHHH
Q 000797 915 DKEKWINLIGDVAGCVSIKRP--KEVQTICLILTKS----INRQQRFQ--REAAAAALSEFVRYSGGFDSLLEQMVEALC 986 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~--~~~~~il~~l~~~----L~s~~~~~--R~~a~aflsEll~~~~~~~~l~~~~i~~L~ 986 (1280)
..+.+.-+.+++++...+..- +.+++++...... ..+..... .++.++..-++....+.. -..++..+.
T Consensus 51 ~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~---g~~ll~~ls 127 (234)
T PF12530_consen 51 SLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH---GVDLLPLLS 127 (234)
T ss_pred chhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh---HHHHHHHHH
Confidence 344467778877776554321 3555555542222 11111111 233334455555543331 223445555
Q ss_pred hhh-CCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC--cccchhhhHHHHH
Q 000797 987 RHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS--KDAVEPILLNLSV 1063 (1280)
Q Consensus 987 ~~l-~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~--~~~~~~~l~~l~~ 1063 (1280)
.-+ ++.++.++.+|+++|..+...++-.+.+ ...++..-|+....+.+..++..|-.++.... .+....+..++..
T Consensus 128 ~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s-~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~ 206 (234)
T PF12530_consen 128 GCLNQSCDEVAQALALEALAPLCEAEVVDFYS-AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQ 206 (234)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHH
Confidence 555 8899999999999999998765544433 35666666655556777777887777775544 3345566666666
Q ss_pred HhccccccCC-------hhhHHHHHH
Q 000797 1064 RLRNLQVSMN-------VKMRRNAFA 1082 (1280)
Q Consensus 1064 ~lr~~fede~-------~~vR~aAi~ 1082 (1280)
.+..+-.+.+ ..+|.+|+.
T Consensus 207 ~lW~~~~~~~~~~~~~~~~~~~~a~~ 232 (234)
T PF12530_consen 207 LLWEYTSSSDVNVASQWTSVRLAAFE 232 (234)
T ss_pred HHHhhccccccchHHHHHHHHHHHHh
Confidence 6666665555 345555543
No 186
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=65.61 E-value=1.3e+02 Score=34.82 Aligned_cols=168 Identities=11% Similarity=0.100 Sum_probs=104.1
Q ss_pred HHHHhc-cCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcc-----hHHHHHHHHHhHHHHHHhcc
Q 000797 1042 LLTILK-SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----REAFLEQIHAMLPRLILHIY 1115 (1280)
Q Consensus 1042 L~~ll~-~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~-----~~~~~eqv~~~LvpLLlHL~ 1115 (1280)
+.=++. .++...++....-+..-+-.+.||.+..+|.-++.++..+........ ...+.+.+..++.|.+.||-
T Consensus 100 l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP 179 (282)
T PF10521_consen 100 LSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLP 179 (282)
T ss_pred HHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCC
Confidence 333444 777788888888888888999999999999999999999997443332 23345556778888888764
Q ss_pred -----CCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhh-hcC
Q 000797 1116 -----DDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA-FEA 1189 (1280)
Q Consensus 1116 -----D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~y-lkS 1189 (1280)
|+...+-.++--||..++.... ... ...+...+++++++ .+.+ .+.+ .+.
T Consensus 180 ~~tp~~~s~~Ll~~ay~~L~~L~~~~~-------~~~--~~~r~~~l~~~l~e---~IL~------------~~~~~~~~ 235 (282)
T PF10521_consen 180 PITPEDESLELLQAAYPALLSLLKTQE-------NDD--SNPRSTWLDKILRE---GILS------------SMEHESSF 235 (282)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhc-------cCC--cccchHHHHHHHHH---HHhh------------hceecccc
Confidence 6778888888888888765432 110 00111112222222 1111 1111 124
Q ss_pred CChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCCh
Q 000797 1190 PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1236 (1280)
Q Consensus 1190 ~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp 1236 (1280)
+.+.++......+..+++.+.-.-. .....++..|-. ..+||+.
T Consensus 236 ~~~~l~~~ll~~l~~~i~~lGi~~~--~hL~rii~~l~~-~l~npf~ 279 (282)
T PF10521_consen 236 SYPRLRTVLLQQLPPIIDELGISSV--KHLQRIIPVLSQ-ILENPFG 279 (282)
T ss_pred CchhHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHH-HhcCCCc
Confidence 5677777777777777766553222 223555666666 5667653
No 187
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.00 E-value=52 Score=42.04 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=86.1
Q ss_pred hhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCC
Q 000797 1014 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1093 (1280)
Q Consensus 1014 ~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~ 1093 (1280)
...+.+||.++..+++.+..+.-+++.++..+.+.+|...++..++.-...+ +|...+..||..+.-.||.+++..+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD- 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLD- 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHH-
Confidence 3457889999999999888999999999999999999777775554444444 7788999999999999999996332
Q ss_pred cchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 000797 1094 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1132 (1280)
Q Consensus 1094 ~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1132 (1280)
+ -+++.-+.|++...+=.+|++...|-......
T Consensus 462 --~----~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 462 --K----AAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred --H----HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1 24556677888888888999988876554443
No 188
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.86 E-value=5.1e+02 Score=35.45 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=129.9
Q ss_pred hhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh--cc
Q 000797 1014 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN--FG 1091 (1280)
Q Consensus 1014 ~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~--~~ 1091 (1280)
.+...+-+.+.+++++.+..+...++.+|..|++..+.+....+.-.|..-|-.+ .+.+..-|..||.++=.+++ ..
T Consensus 693 q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~ 771 (1176)
T KOG1248|consen 693 QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSS 771 (1176)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhh
Confidence 3445666777777777778888999999999999988676666666666666666 88999999999999877762 11
Q ss_pred CCcchHHHHHHHHHhHHHHHHh-ccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Q 000797 1092 VGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1170 (1280)
Q Consensus 1092 ~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~ 1170 (1280)
.....++ -+..++..++.+-- +--+..-++...-.++.++ +.+. ...++ +
T Consensus 772 ~d~g~e~-~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~i-----------l~e~----~~~ld-~------------ 822 (1176)
T KOG1248|consen 772 LDDGNEP-ASAILNEFLSIISAGLVGDSTRVVASDIVAITHI-----------LQEF----KNILD-D------------ 822 (1176)
T ss_pred hcccccc-hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-----------HHHH----hcccc-H------------
Confidence 1111112 22233333333331 2222222222212222221 1110 00011 1
Q ss_pred hCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1171 HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1171 ~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
+.+..++.+.-.|+.|..+.|+.+|+-|+--++.-+|...+ ....+++...+-. |.+|----||.++-.=|..|.
T Consensus 823 ---~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 823 ---ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-SPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-hhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHH
Confidence 22344667777899999999999999999888877775554 4556788888888 899999999988777666665
Q ss_pred H
Q 000797 1251 K 1251 (1280)
Q Consensus 1251 k 1251 (1280)
+
T Consensus 898 r 898 (1176)
T KOG1248|consen 898 R 898 (1176)
T ss_pred H
Confidence 4
No 189
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=63.79 E-value=4.6e+02 Score=38.15 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=93.5
Q ss_pred cccccchHHHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhh-------hhHhHHHHH
Q 000797 951 RQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIH-------QYATQVLSV 1022 (1280)
Q Consensus 951 s~~~~~R~~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~-------~~~~~lL~a 1022 (1280)
+....-|-..+-.+.+++..... ...=-+.+..++.....|+++.+-.+|-+.+..+..+... .-...++.|
T Consensus 1194 s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~c 1273 (1780)
T PLN03076 1194 SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNC 1273 (1780)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHH
Confidence 33444454555555555554322 1111256777887777888887777777766655433111 122344444
Q ss_pred HHhhccCC-ChHHHHHHHHHHHHHhccCC-----------------------------------cccchhhhHHHHHHhc
Q 000797 1023 ILALLDDL-DESVQLTAVSCLLTILKSSS-----------------------------------KDAVEPILLNLSVRLR 1066 (1280)
Q Consensus 1023 ll~~L~d~-d~~V~~ea~~~L~~ll~~l~-----------------------------------~~~~~~~l~~l~~~lr 1066 (1280)
+.+.-... +.++-+.|+.-|..+...+- .++...+-..+...+.
T Consensus 1274 L~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076 1274 LIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred HHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 44333222 35677888888886633221 1111234556666666
Q ss_pred cccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHH-hHHHHHHhcc
Q 000797 1067 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA-MLPRLILHIY 1115 (1280)
Q Consensus 1067 ~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~-~LvpLLlHL~ 1115 (1280)
..-.|+|.+||..|+..+=++...-++.....+-+.+++ .|.|++-.++
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 666689999999999866555542223334446677776 6777765543
No 190
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=62.31 E-value=91 Score=33.93 Aligned_cols=156 Identities=9% Similarity=-0.016 Sum_probs=83.7
Q ss_pred cccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh----hHHh
Q 000797 1067 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI----GVYG 1142 (1280)
Q Consensus 1067 ~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w----~l~~ 1142 (1280)
|+++=..+.+|..|=.++-++.. . ++.....-. -.+++.-+.+-.+-..+......... .+..
T Consensus 26 ~~~GV~~p~lr~lak~~~~~~~~---~-------~~~~~l~~~---L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~~ 92 (213)
T PF08713_consen 26 PFLGVRTPDLRKLAKDIYKELKL---S-------EELYELADE---LWESGYREERYLALLILDKRRKKLTEEDLELLEK 92 (213)
T ss_dssp B-----HHHHHHHHHHHHHHHCT---S-------HHHHHHHHH---HHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHHH
T ss_pred cccCcCcHHHHHHHHHHHhhccc---c-------hHHHHHHHH---HcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHHH
Confidence 44544556666666555555432 1 111111111 13456667776666666655544432 2222
Q ss_pred hhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHH
Q 000797 1143 IFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQV 1222 (1280)
Q Consensus 1143 l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~ 1222 (1280)
.+.. .+.=+....+|..+.......-..+......+.+|+.+-.|++|....-..... .+.+.+
T Consensus 93 ~~~~--------~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------~~~~~~ 156 (213)
T PF08713_consen 93 WLPD--------IDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------EDFDEL 156 (213)
T ss_dssp CCCC--------CCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------CHHHHH
T ss_pred Hhcc--------CCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------cCHHHH
Confidence 2221 111223344444444443222244555667799999999999887443212211 345777
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000797 1223 FGLLVVKLSQSADAIVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1223 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1252 (1280)
+..+.. +.+||+..||...+-+|..+++.
T Consensus 157 l~~~~~-~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 157 LEIIEA-LLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHH-CTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-HcCCchHHHHHHHHHHHHHHHHh
Confidence 888887 78999999999999998887754
No 191
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.06 E-value=54 Score=34.60 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHhhccCCC-hHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1018 QVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1018 ~lL~all~~L~d~d-~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
.++.+++.-|.|+. ..--..++.++-.|+..++.+- .+|+.++...+-..+..-.+..|..-+.-+|.+.+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34556666665543 1122244555555665555444 56666666666555555555666666666666654
No 192
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.46 E-value=40 Score=39.01 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHhhCChhHHH----HHHHHhhhhccccccchHHHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhhCC
Q 000797 917 EKWINLIGDVAGCVSIKRPKEVQT----ICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSD 991 (1280)
Q Consensus 917 ~~~~~gV~lLar~l~~~~~~~~~~----il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l~D 991 (1280)
+...+|+- ..|.++.+++..+.+ +.-++.+.++++.-.=-.||+..++++..+-.. ....++.++..|...-.+
T Consensus 103 ~~~vdgLn-~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~ 181 (334)
T KOG2933|consen 103 EDKVDGLN-SIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQ 181 (334)
T ss_pred HHHhhhHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45677777 667788887764444 444455556665544446666666665554322 222556777888888888
Q ss_pred CChhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC
Q 000797 992 ESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1050 (1280)
Q Consensus 992 ~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~ 1050 (1280)
.|.-||.-|.++|.-+..+ .- ..+|+-++.++...+..++..++....+....++
T Consensus 182 dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 182 DNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred cchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 9999999999998877654 21 3457777777888889999999988888887776
No 193
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=60.53 E-value=3.9e+02 Score=32.63 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=96.7
Q ss_pred HHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH--hccCCCHHHHHHHHHHHHhhchhhhh
Q 000797 1061 LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL--HIYDDDLSVRQACRNTLKQVAPFMEI 1138 (1280)
Q Consensus 1061 l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl--HL~D~~~~V~~ack~tL~~~a~~L~w 1138 (1280)
+..++-..|+..+.++-.++.-++|..++ .+.-+...+..+.++-|+.++. |-.|.|..+.-||-.||+..+.-.-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~- 393 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS- 393 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-
Confidence 44556778999999999999999999987 2334566677789999999998 5667777788899999998764211
Q ss_pred hHHhhhcccC-CCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhc
Q 000797 1139 GVYGIFNSHC-FNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL 1217 (1280)
Q Consensus 1139 ~l~~l~~~~~-~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~ 1217 (1280)
++.. ...| ....+...+..+.| .+.+-+..++..+.+.++.+-. .+.
T Consensus 394 ------nka~~~~aG-------vteaIL~~lk~~~p-pv~fkllgTlrM~~d~qe~~a~-------eL~----------- 441 (604)
T KOG4500|consen 394 ------NKAHFAPAG-------VTEAILLQLKLASP-PVTFKLLGTLRMIRDSQEYIAC-------ELA----------- 441 (604)
T ss_pred ------chhhccccc-------hHHHHHHHHHhcCC-cchHHHHHHHHHHHhchHHHHH-------HHh-----------
Confidence 1110 1111 23334443333333 2333333344555554443211 111
Q ss_pred CHHHHHHHHHHHhccCCChh-hHHHHHHHHHHHHHHhhh
Q 000797 1218 FYTQVFGLLVVKLSQSADAI-VRATCSSSLGWLLKSINS 1255 (1280)
Q Consensus 1218 ~~e~~~~~L~~~Ll~Dpdp~-VR~~Aa~aL~~l~k~~~~ 1255 (1280)
+-..++.-|.+ .-+.||-. |---.-+.|.-|-|.|++
T Consensus 442 kn~~l~ekLv~-Wsks~D~aGv~gESnRll~~lIkHs~~ 479 (604)
T KOG4500|consen 442 KNPELFEKLVD-WSKSPDFAGVAGESNRLLLGLIKHSKY 479 (604)
T ss_pred cCHHHHHHHHH-hhhCCccchhhhhhhHHHHHHHHhhHh
Confidence 12345566777 67777766 666666666666666554
No 194
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=59.81 E-value=3.8e+02 Score=32.33 Aligned_cols=145 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhhHh-HHHHHHHhhccCCC--hHHHHHHHHHHHHHhccCCcc
Q 000797 978 LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYAT-QVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKD 1052 (1280)
Q Consensus 978 ~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~~~-~lL~all~~L~d~d--~~V~~ea~~~L~~ll~~l~~~ 1052 (1280)
+...+..+...+-+++..||.+++|-+-.+..+ .+....+ .+---+..+|+-.. +.=..+|+.-.+++++.- +
T Consensus 23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~--~ 100 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK--K 100 (371)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc--C
Confidence 333444444444444599999999988655432 1111111 11122344444332 334567888888888763 3
Q ss_pred cchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHH-HHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHh
Q 000797 1053 AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA-FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1053 ~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~-~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1131 (1280)
+...+-..++..+-..-|++++.+|..++..+..++-. +| +.- -.+++-.|+--+.|...++...+-.++..
T Consensus 101 ~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~------~P~lv~-~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 101 GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALL------NPELVA-ECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh------CHHHHH-HcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 44556677788888888899999999999999998741 11 000 01344444545677666666666665554
No 195
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=59.70 E-value=6.8 Score=28.38 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.5
Q ss_pred HHHHHHhhccCCcchhhhhhHhHHHHHHHhhccC
Q 000797 996 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1029 (1280)
Q Consensus 996 VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d 1029 (1280)
||..+.++||+++. +..++.+++.|+|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 79999999999997 5567777776653
No 196
>PF05536 Neurochondrin: Neurochondrin
Probab=59.07 E-value=4.3e+02 Score=33.68 Aligned_cols=246 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHH-----HHhhhCC-------CChhHHHHHHhhccC
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEA-----LCRHVSD-------ESPTVRGLCLRGLVQ 1006 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~-----L~~~l~D-------~~~~VR~laLrGLg~ 1006 (1280)
.+.++....+|++..+.+|.+|.+.++.++........-.+.+.+. |.+-|+- +....+.+|+-=|+.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Q ss_pred Ccch---hhhhhHhHHHHHHHhhccCCCh-HHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHH
Q 000797 1007 IPSI---HIHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFA 1082 (1280)
Q Consensus 1007 l~~~---~v~~~~~~lL~all~~L~d~d~-~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~ 1082 (1280)
.... ..+...-.-+|.+++.+...++ .++-+++..|..|. .-+...-.-+-..-...|.....+ ++.....|+.
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Q ss_pred HHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHH
Q 000797 1083 AFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFV 1161 (1280)
Q Consensus 1083 lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~ 1161 (1280)
++..+......+.-......+...+..+=.........-+-.. . .+..++........+...-+++.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfel------------l~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFEL------------LEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHH------------HHHHHHhcCcCCccccccCChhhhH
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchh
Q 000797 1162 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQ 1212 (1280)
Q Consensus 1162 ~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~ 1212 (1280)
.++.+.+..-..+| +-+.-|..|-.+++.+++....+
T Consensus 230 ~~l~~gl~~iL~sr--------------~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 230 SDLRKGLRDILQSR--------------LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHHHhChH
No 197
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.11 E-value=11 Score=30.37 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 000797 1217 LFYTQVFGLLVVKLSQSADAIVRATCSSSL 1246 (1280)
Q Consensus 1217 ~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL 1246 (1280)
++.+.+.+++.. -+.|++|.||..|-+.+
T Consensus 14 l~~~~v~~~i~~-rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 14 LDSSDVQSAIIR-RLSDSSPSVREAAVDLL 42 (42)
T ss_pred cchHHHHHHHHH-HhcCCChHHHHHHHHHC
Confidence 345678888888 69999999999997753
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.71 E-value=1.5e+02 Score=38.55 Aligned_cols=168 Identities=18% Similarity=0.151 Sum_probs=98.4
Q ss_pred hhHHHHHHh--ccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHH-HhHHHHHHhccCC--CHHHHHHHHHHHHh
Q 000797 1057 ILLNLSVRL--RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDD--DLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1057 ~l~~l~~~l--r~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~-~~LvpLLlHL~D~--~~~V~~ack~tL~~ 1131 (1280)
....+|-|. ..+|+|-++.+| .+-++++ -|++.|- +++.||+--|+-+ |++..+.+-+|+..
T Consensus 23 TI~kLcDRvessTL~eDRR~A~r-----gLKa~sr--------kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVR-----GLKAFSR--------KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLI 89 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHH-----HHHHHHH--------HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 344444444 357887554444 4444443 2455443 6777877666654 77777777666665
Q ss_pred hchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc
Q 000797 1132 VAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1132 ~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
+.. . .-.++-. + .-..+++=..|+..|++ .+|.+. -.+.|+.--.-+||..|+.++..++.+.+
T Consensus 90 l~~---~dd~~~v~d------d-s~qsdd~g~~iae~fik-~qd~I~----lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 90 LTS---HDDSPEVMD------D-STQSDDLGLWIAEQFIK-NQDNIT----LLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred HHh---cCcchhhcc------c-chhhhHHHHHHHHHHHc-CchhHH----HHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 432 2 2111111 1 11223343444555554 345444 34456666678899999999999999988
Q ss_pred hhhhhh-cCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHh
Q 000797 1211 DQHILS-LFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1211 ~~~~~~-~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1253 (1280)
.+-... +....-+..|+. +++|.-..||-.|---|.-+.|-+
T Consensus 155 ~e~q~~ll~~P~gIS~lmd-lL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMD-LLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred HHHHHHHHHCchhHHHHHH-HHhhhhhhhchhHHHHHHHHHccC
Confidence 655432 233445677888 899999999986655555444433
No 199
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=56.65 E-value=13 Score=30.05 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhh
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRG 1003 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrG 1003 (1280)
..+...+.+++.|++|.||..|+.-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3578899999999999999999863
No 200
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.05 E-value=6.1e+02 Score=32.90 Aligned_cols=217 Identities=14% Similarity=0.122 Sum_probs=122.2
Q ss_pred hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc--cc------hh-hhHHHHHHhccccccCChhhHHHHHHHHHHH
Q 000797 1017 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AV------EP-ILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1087 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~--~~------~~-~l~~l~~~lr~~fede~~~vR~aAi~lfG~L 1087 (1280)
..++.++..--.+.-...+.-|+.-|+++....+.. +. .| ..++++--|.-+=..+++..|+.-++.+-.+
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 344555555543333345566677777776543322 11 12 2233333333333447789999999999888
Q ss_pred hhccCC--cchHHH----HHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHH
Q 000797 1088 SNFGVG--SQREAF----LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFV 1161 (1280)
Q Consensus 1088 ~~~~~~--~~~~~~----~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~ 1161 (1280)
...... +.+++. .+-|+=..+.|..|+ |++++.-..|...||..-. .+ +-++.|= .+
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls-----------~r----E~NiRYL-aL 350 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLS-----------HR----ETNIRYL-AL 350 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhh-----------cc----cccchhh-hH
Confidence 863221 222232 233555667888887 6666666666666655321 11 1134453 33
Q ss_pred HHHHHHHHHhC-cchHHHHHHHHHhhhc-CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhH
Q 000797 1162 RDLTRQFVQHF-PSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1239 (1280)
Q Consensus 1162 ~~~~~~L~~~~-~~~~~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR 1239 (1280)
+.+|+....++ .+.+..+..+.+.-+| .+...||+-|+-++=.|- . .+ ..++++..|..+ +.--|+.+|
T Consensus 351 Esm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc-D--~~-----Nak~IV~elLqY-L~tAd~sir 421 (938)
T KOG1077|consen 351 ESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC-D--VS-----NAKQIVAELLQY-LETADYSIR 421 (938)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh-c--hh-----hHHHHHHHHHHH-HhhcchHHH
Confidence 46677666655 4566667778888999 889999999997663332 1 11 124444444443 334788888
Q ss_pred HHHHHHHHHH-HHHhhhcccc
Q 000797 1240 ATCSSSLGWL-LKSINSHSWR 1259 (1280)
Q Consensus 1240 ~~Aa~aL~~l-~k~~~~~~~~ 1259 (1280)
.--+--...| -||.-..+|-
T Consensus 422 eeivlKvAILaEKyAtDy~Wy 442 (938)
T KOG1077|consen 422 EEIVLKVAILAEKYATDYSWY 442 (938)
T ss_pred HHHHHHHHHHHHHhcCCcchh
Confidence 7433332333 3777777773
No 201
>PF14961 BROMI: Broad-minded protein
Probab=53.30 E-value=79 Score=42.80 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=119.9
Q ss_pred HHHHhhhC-CCChhHHHHHHhhccCCcchhh--hhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhH
Q 000797 983 EALCRHVS-DESPTVRGLCLRGLVQIPSIHI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1059 (1280)
Q Consensus 983 ~~L~~~l~-D~~~~VR~laLrGLg~l~~~~v--~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~ 1059 (1280)
+.+.+.+. +-.-.||.-|++-|......+| ...-+.+-..+..+|.|.|+.+...++.-..+.+...+......+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 44445553 3345799999999998876644 44567778889999999999999999999999998876655566677
Q ss_pred HHHHHhccccccCChhhH-------------HHHHHHHHHHhhccCC------cchHHHHHHHHHhHHHHHHhccCCCHH
Q 000797 1060 NLSVRLRNLQVSMNVKMR-------------RNAFAAFGALSNFGVG------SQREAFLEQIHAMLPRLILHIYDDDLS 1120 (1280)
Q Consensus 1060 ~l~~~lr~~fede~~~vR-------------~aAi~lfG~L~~~~~~------~~~~~~~eqv~~~LvpLLlHL~D~~~~ 1120 (1280)
+|+..+-..|-..+..+. ...+.-+.=+..|-.. ...+.|.|.|+.+-..|+--=.+.+.-
T Consensus 244 sL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~~~~~~~~ 323 (1296)
T PF14961_consen 244 SLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLSTHHDQNSL 323 (1296)
T ss_pred HHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcccccCCCc
Confidence 777777555533222222 1111122222223111 134667788887777766522233322
Q ss_pred HHHHHHHHHHhhchhhhh-hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC
Q 000797 1121 VRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1191 (1280)
Q Consensus 1121 V~~ack~tL~~~a~~L~w-~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~ 1191 (1280)
+..++-..+ .++.. +.++.+-+. |-.+ ..+ + ..+.+.|..+++..+..-+.||+.|+.+..
T Consensus 324 ~s~k~L~pi----~~lslLD~kA~WFkK-WmHg-~yS-R---~vvlr~L~kky~sli~~av~qCi~y~~~~~ 385 (1296)
T PF14961_consen 324 GSPKTLTPI----HFLSLLDPKAVWFKK-WMHG-YYS-R---TVVLRLLEKKYKSLIVNAVQQCIQYVESCE 385 (1296)
T ss_pred ccccccchh----hhhhhhccchHHHHH-HHhh-cch-H---HHHHHHHccccchHHHHHHHHHHHHHHHhh
Confidence 222222222 44555 555544333 5544 111 2 123567777888888899999999988654
No 202
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=53.01 E-value=97 Score=37.42 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=96.7
Q ss_pred HHHHHhhhhccccccchHHHHHHHHHhhhCCCc-h----hhHHHHHHHHHHh-hhCCCChhHHHHHHhhccCCcch---h
Q 000797 941 ICLILTKSINRQQRFQREAAAAALSEFVRYSGG-F----DSLLEQMVEALCR-HVSDESPTVRGLCLRGLVQIPSI---H 1011 (1280)
Q Consensus 941 il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~----~~l~~~~i~~L~~-~l~D~~~~VR~laLrGLg~l~~~---~ 1011 (1280)
++.++..-+.|.+-.--.++..|++.|.+.-.- . ...++.++..|.+ .-.|.|..+.++++-+|-|+... |
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 556666666677666667777888887764211 2 2233455666665 66788999999999999999753 3
Q ss_pred hhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhcc
Q 000797 1012 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1091 (1280)
Q Consensus 1012 v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~ 1091 (1280)
.+-....+..+++.-+.-..++|+-.-+..|+.+.+..+. ++..+. ---.+|-.|..++
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~---------~a~eL~------------kn~~l~ekLv~Ws 454 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY---------IACELA------------KNPELFEKLVDWS 454 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH---------HHHHHh------------cCHHHHHHHHHhh
Confidence 3333455677888888888899999999999988876431 111111 0123455555555
Q ss_pred CCcchHHHHHHHHHhHHHHHHh
Q 000797 1092 VGSQREAFLEQIHAMLPRLILH 1113 (1280)
Q Consensus 1092 ~~~~~~~~~eqv~~~LvpLLlH 1113 (1280)
..+++-....+..+.+.-|+-|
T Consensus 455 ks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 455 KSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred hCCccchhhhhhhHHHHHHHHh
Confidence 5555444555555555555555
No 203
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=50.61 E-value=1.6e+02 Score=31.84 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred ccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhc----hhhhh---
Q 000797 1066 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA----PFMEI--- 1138 (1280)
Q Consensus 1066 r~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a----~~L~w--- 1138 (1280)
..+.-+.+..+|.+|+.+.+.+.+.| ...| ..+++.++.-..|+++.++..+...+..+. .++..
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qG---LvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQG---LVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcC---CCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34667788999999999999999843 3334 246677777788999999999988877764 22221
Q ss_pred ---hHHhhhcccCCCCCCCCC---hHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC
Q 000797 1139 ---GVYGIFNSHCFNSDHRSD---YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1191 (1280)
Q Consensus 1139 ---~l~~l~~~~~~~~~~~l~---~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~ 1191 (1280)
...--|++....+..+.. ...++..+...+. ..+..-..|+.+.+..|....
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 222233333212211111 4556667666555 555566678888888777654
No 204
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=49.96 E-value=2.8e+02 Score=34.28 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHhh
Q 000797 1220 TQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1220 e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1254 (1280)
.-++..|++..++++++..+.+||.++..|-..|.
T Consensus 311 nPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 311 NPIIRPLMDSIKREENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence 45778888889999999999999999999998887
No 205
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=48.82 E-value=68 Score=37.23 Aligned_cols=106 Identities=24% Similarity=0.282 Sum_probs=75.7
Q ss_pred HHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH-hccC
Q 000797 1038 AVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYD 1116 (1280)
Q Consensus 1038 a~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D 1116 (1280)
.+..|.+++..+...++ ..++..-+..=+-.+++.|+..|-.-.|-+...+..........-|-+.+.|+++ ..-.
T Consensus 63 cVscLERLfkakegahl---apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHL---APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhh---chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 34556666665554333 3445555555566788999999999999999877665666666666677888888 6888
Q ss_pred CCHHHHHHHHHHHHhhchhhhhhHHhhhccc
Q 000797 1117 DDLSVRQACRNTLKQVAPFMEIGVYGIFNSH 1147 (1280)
Q Consensus 1117 ~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~ 1147 (1280)
+|.+|++++-.++.+++.+- -.+..+|...
T Consensus 140 eddeVAkAAiesikrialfp-aaleaiFeSe 169 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFP-AALEAIFESE 169 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcH-HHHHHhcccc
Confidence 89999999999999998642 1445555544
No 206
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.72 E-value=7.8e+02 Score=32.58 Aligned_cols=302 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCC--hhHHHHHHHHhhhhccc----------------cccchHHHHHHHHHhhh---------CCCchh
Q 000797 923 IGDVAGCVSIKRP--KEVQTICLILTKSINRQ----------------QRFQREAAAAALSEFVR---------YSGGFD 975 (1280)
Q Consensus 923 V~lLar~l~~~~~--~~~~~il~~l~~~L~s~----------------~~~~R~~a~aflsEll~---------~~~~~~ 975 (1280)
...|+..+.+... |.++..-+-....+..+ +..-|++|..+|=..++ ...-..
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~ 83 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE 83 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Q ss_pred hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc---
Q 000797 976 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--- 1052 (1280)
Q Consensus 976 ~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~--- 1052 (1280)
.-.+.+-..+...--.....+.+---.+++-++.++..+.-++++|-+.+.+...|-.+....+..-..|..+-...
T Consensus 84 ~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrS 163 (960)
T KOG1992|consen 84 EDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRS 163 (960)
T ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccccc
Q ss_pred -----cchhhhHHHHHHhccccccCChhhHHHHHH------HHHHHhh-------ccCCcchHHHHHHHHHhHHHHHHhc
Q 000797 1053 -----AVEPILLNLSVRLRNLQVSMNVKMRRNAFA------AFGALSN-------FGVGSQREAFLEQIHAMLPRLILHI 1114 (1280)
Q Consensus 1053 -----~~~~~l~~l~~~lr~~fede~~~vR~aAi~------lfG~L~~-------~~~~~~~~~~~eqv~~~LvpLLlHL 1114 (1280)
.+.-.+...+.-+..+|-......+..+=. +||.+.= ..--.-.+.|.+++-.-+..+.-.|
T Consensus 164 daL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l 243 (960)
T KOG1992|consen 164 DALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLL 243 (960)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHH
Q ss_pred c---------CCCHHHHHHHHHHHHhhchhhhhhHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Q 000797 1115 Y---------DDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS-RIDSYMGSTI 1184 (1280)
Q Consensus 1115 ~---------D~~~~V~~ack~tL~~~a~~L~w~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~-~~~~~l~~~l 1184 (1280)
. ++++.|...-|...|.+..+---+..+.|+... ++|+..+|..|..--|+ +.+.++..++
T Consensus 244 ~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl---------~~fv~~~W~LL~~~s~~~kyD~Lvs~Al 314 (960)
T KOG1992|consen 244 TYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFL---------PDFVTATWNLLVSTSPDTKYDYLVSKAL 314 (960)
T ss_pred hccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhH---------HHHHHHHHHHHHhcCCCccHHHHHHHHH
Q ss_pred hhh------------------------------------------------------cCCChhHHHHHHHHHHHhhccCc
Q 000797 1185 QAF------------------------------------------------------EAPWPIIQANAIYFSSSILCLCD 1210 (1280)
Q Consensus 1185 ~yl------------------------------------------------------kS~~~~IR~aA~~fiG~l~~~~~ 1210 (1280)
.|+ .|.-..=|++|+-+++.+..+.
T Consensus 315 ~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~f- 393 (960)
T KOG1992|consen 315 QFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNF- 393 (960)
T ss_pred HHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHh-
Q ss_pred hhhhhhcCHHHHHHHHHHHhccCCC
Q 000797 1211 DQHILSLFYTQVFGLLVVKLSQSAD 1235 (1280)
Q Consensus 1211 ~~~~~~~~~e~~~~~L~~~Ll~Dpd 1235 (1280)
+.....+-...+-+-|.. -.++|+
T Consensus 394 e~~vt~v~~~~v~~~l~~-y~~nPS 417 (960)
T KOG1992|consen 394 EGQVTGVFSSEVQRLLDQ-YSKNPS 417 (960)
T ss_pred cchhHHHHHHHHHHHHHH-hccCCC
No 207
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=48.31 E-value=9.5e+02 Score=33.42 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHH
Q 000797 1162 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1241 (1280)
Q Consensus 1162 ~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~ 1241 (1280)
+.-.+.|..++++.+++.+.+| |..++ . -+...|. -+..-+-.......+...++.- .-....||+..||..
T Consensus 491 r~AL~nLL~~N~dLl~~~IdrC--Yss~~--~--va~gYF~-vlaev~~~~~~~~~~~~~LL~L-~Lfklg~~~~eIR~~ 562 (1120)
T PF14228_consen 491 RRALKNLLEHNPDLLDWVIDRC--YSSSP--R--VAEGYFT-VLAEVFSEREYPPCPFWELLNL-VLFKLGDESSEIRSK 562 (1120)
T ss_pred HHHHHHHHHhhHHHHHHHHHHh--cCCCh--h--HHHHHHH-HHHHHHHcCCCCCCCHHHhHHH-HHHhhcCCcHHHHHH
Confidence 4446777888999888888888 55442 2 2233332 2222111111112344455542 222588999999999
Q ss_pred HHHHHHHHHHH
Q 000797 1242 CSSSLGWLLKS 1252 (1280)
Q Consensus 1242 Aa~aL~~l~k~ 1252 (1280)
|.+=|..+-+.
T Consensus 563 A~qLL~~Le~R 573 (1120)
T PF14228_consen 563 AMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 208
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=48.20 E-value=7.9e+02 Score=32.48 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhhchhhhh-----hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHh------
Q 000797 1117 DDLSVRQACRNTLKQVAPFMEI-----GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ------ 1185 (1280)
Q Consensus 1117 ~~~~V~~ack~tL~~~a~~L~w-----~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~------ 1185 (1280)
....|.+.|...+..|-.+ .. ....+........+-.-.++.+.+.+.+.+-...++.+...+.....
T Consensus 395 ~~~~~~~~a~~vi~~~l~~-D~~~l~~~~~~l~~~~~~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~ 473 (727)
T PF12726_consen 395 SNSSVSNSAMKVIRNALAL-DILSLCEESQALLRGKPLQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEK 473 (727)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccc
Confidence 3556777788777777654 33 22333333212222122345566666666665666655555554222
Q ss_pred ---------------hhcCCChhHHHHHHHHHHHhhccCchhhhhhc-CHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1186 ---------------AFEAPWPIIQANAIYFSSSILCLCDDQHILSL-FYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1186 ---------------ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~-~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
.++.....++.....++|.+... +++++.++ .......++.. ++=.|++.++..|..=++..
T Consensus 474 ~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~-~~~~L~~l~~d~~~~~~i~s-~lfsp~~~l~qaA~~llk~~ 551 (727)
T PF12726_consen 474 FPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDF-DPSHLKELLSDPDAAQAIWS-LLFSPDDDLYQAAQDLLKQA 551 (727)
T ss_pred cCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHcCcchhhHHHh-heeCCChHHHHHHHHHHHHH
Confidence 22222333444444444444433 45555443 33456677887 67779999998887765543
No 209
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.09 E-value=8.2e+02 Score=32.64 Aligned_cols=92 Identities=12% Similarity=0.196 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHhCcchH-------HHHHH-HHHhhhcCCChhHHHHHHHHHHHhhccCch-------hhhhhcCHHH
Q 000797 1157 YETFVRDLTRQFVQHFPSRI-------DSYMG-STIQAFEAPWPIIQANAIYFSSSILCLCDD-------QHILSLFYTQ 1221 (1280)
Q Consensus 1157 ~~~f~~~~~~~L~~~~~~~~-------~~~l~-~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~-------~~~~~~~~e~ 1221 (1280)
|.+|+. +.+...+..|+-. ..++. .++..+++|-+.-=+||+.|+-.++..-.. +....++...
T Consensus 810 ~~~~~~-~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~L 888 (982)
T KOG2022|consen 810 YLQLIG-FVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPIL 888 (982)
T ss_pred HHHHHH-HHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHH
Confidence 344444 3444445555432 22444 888999999988666677676666643222 2233456566
Q ss_pred HHHHHHHHhccC-CChhhHHHHHHHHHHHH
Q 000797 1222 VFGLLVVKLSQS-ADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1222 ~~~~L~~~Ll~D-pdp~VR~~Aa~aL~~l~ 1250 (1280)
+++.+.. .-.. +-|.|-+.|-.=+....
T Consensus 889 i~~im~~-vgg~~~RS~ld~~aDIL~al~~ 917 (982)
T KOG2022|consen 889 IYAIMRG-VGGEASRSTLDALADILLALNA 917 (982)
T ss_pred HHHHHHH-hcCcCccchhHHHHHHHHHHHH
Confidence 6676666 4443 35666666554443333
No 210
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.67 E-value=26 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred HhHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 000797 1105 AMLPRLILHIYDDDLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1105 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1133 (1280)
+.+.+|+-.|++++++|++.|..||+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45777777899999999999999999875
No 211
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.35 E-value=4.1e+02 Score=32.50 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHhhCCh------hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchh-hHHHHHHHHHHhhhC
Q 000797 918 KWINLIGDVAGCVSIKRPK------EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD-SLLEQMVEALCRHVS 990 (1280)
Q Consensus 918 ~~~~gV~lLar~l~~~~~~------~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~-~l~~~~i~~L~~~l~ 990 (1280)
.|.+-|..+...+....+. .-+..+..++..++|++.+.|-....++..........+ ...+.+.+.+.+-..
T Consensus 105 pHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~ 184 (409)
T PF01603_consen 105 PHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY 184 (409)
T ss_dssp HHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 4677777666666665432 567889999999999999999877777777655443322 223333344443332
Q ss_pred -----------------------CCC-hhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCCChH------------
Q 000797 991 -----------------------DES-PTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDES------------ 1033 (1280)
Q Consensus 991 -----------------------D~~-~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~d~~------------ 1033 (1280)
-|- +.-+..-.+.|-.|... ....|++++..++..-++. |+.
T Consensus 185 e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l~~~~i~~llk~ 263 (409)
T PF01603_consen 185 ETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSLAEPVIKGLLKH 263 (409)
T ss_dssp TTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHh
Confidence 221 11122222222222211 4566777766666555542 322
Q ss_pred -------HHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHh
Q 000797 1034 -------VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1106 (1280)
Q Consensus 1034 -------V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~ 1106 (1280)
=..--+.-+..|++.++......+...+..++...++.++..|=..|+.++..=-= . .......+.++..
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~-~--~li~~~~~~i~p~ 340 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYF-L--SLISQNSRVILPI 340 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHH-H--HHHHCTHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHH-H--HHHHhChHHHHHH
Confidence 11234566778888888888888888999999999999999988888766544210 0 0011122333444
Q ss_pred HHHHHHhccC-C-CHHHHHHHHHHHHhhc
Q 000797 1107 LPRLILHIYD-D-DLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1107 LvpLLlHL~D-~-~~~V~~ack~tL~~~a 1133 (1280)
+.|-+..... - |..|+..+..++..+-
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4443333222 2 6678877777766643
No 212
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=46.21 E-value=1.3e+02 Score=33.33 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=80.3
Q ss_pred CChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc-----CChhhHHHHHHHHHHHhhccCCcchHHHHHH-H
Q 000797 1030 LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLEQ-I 1103 (1280)
Q Consensus 1030 ~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed-----e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eq-v 1103 (1280)
....-+..|+..|..+..+-+.+.+ -.--++..-|.||+.- .-+-+|.+|.+..|++.+.+ . .....+ .
T Consensus 112 ~~snRvcnaL~lLQclaShPetk~~-Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd---s-q~vi~fLl 186 (315)
T COG5209 112 RESNRVCNALNLLQCLASHPETKKV-FLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND---S-QYVIKFLL 186 (315)
T ss_pred hhhhHHHHHHHHHHHHhcCcchhee-eeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC---C-HHHHHHHH
Confidence 3455677788888877765443321 0111222223455443 23569999999999999832 2 222333 3
Q ss_pred HHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHH
Q 000797 1104 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG 1181 (1280)
Q Consensus 1104 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~ 1181 (1280)
-.-+|||.+...|...+..+... ......+++- .++...++. ++-......++++..+++...+.++ +.
T Consensus 187 tTeivPLcLrIme~gSElSktva--ifI~qkil~dDvGLqYiCqT~----eRFyAv~~vln~mv~qlVs~~~~RL---lK 257 (315)
T COG5209 187 TTEIVPLCLRIMELGSELSKTVA--IFIFQKILGDDVGLQYICQTF----ERFYAVNLVLNSMVSQLVSLGSTRL---LK 257 (315)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHH--HHHHHHHhccchhHHHHHHHH----HHHHHHHHHHHHHHHHHhhccchhH---HH
Confidence 35689999998888777655321 1222222222 222222211 0001113345666777777766664 33
Q ss_pred HHHh-hhc-CCChhHHH
Q 000797 1182 STIQ-AFE-APWPIIQA 1196 (1280)
Q Consensus 1182 ~~l~-ylk-S~~~~IR~ 1196 (1280)
.++. |++ |..+++|+
T Consensus 258 h~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 258 HAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHheeecCCHhHHH
Confidence 4444 554 45566776
No 213
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=45.51 E-value=3.2e+02 Score=35.06 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1190 PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1190 ~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
-.++||++-.+-.|.+-- .+++ --++..|.+ ..+|.|+.|-..|--|+|.++.
T Consensus 652 ge~~iRravPLal~llsv-SNPq-------~~vlDtLsk-~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 652 GEPHIRRAVPLALGLLSV-SNPQ-------VNVLDTLSK-FSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred CCHHHHHHHHHHHhhhcc-CCCc-------chHHHHHHH-hccCcchHHHHHHHHHhccccC
Confidence 346788888877776642 2222 235677888 7889999999888888888773
No 214
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.94 E-value=1.2e+03 Score=33.82 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=94.6
Q ss_pred chhhHHHHHHHHHHH-HHhhCChhHHHHHHHHhhhhccccccchHHHHH-HHHHhhhCCCc--hhhHHHHHHHHHHhhhC
Q 000797 915 DKEKWINLIGDVAGC-VSIKRPKEVQTICLILTKSINRQQRFQREAAAA-ALSEFVRYSGG--FDSLLEQMVEALCRHVS 990 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~-l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~a-flsEll~~~~~--~~~l~~~~i~~L~~~l~ 990 (1280)
.+-.-.-+..-+||- .+...++-+..+....+.-+.|-.+..+.++.. .++-+-++.+. ....+...+..|..--.
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 333333355556663 233455678888999999999988777766654 44444444433 33445556777888888
Q ss_pred CCCh-hHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhc
Q 000797 991 DESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1066 (1280)
Q Consensus 991 D~~~-~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr 1066 (1280)
|+++ .|+.++|++|.-+... -.+.+..+-+..++..|-. +++...+--.+.++.+.. .++.+.++-.+...++
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls-~p~~~~ev~q~~~R~~~~--~~~~~alittlgpeL~ 1045 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLS-VPTSHVEVHQCYNRCFNG--DDDEDALITTLGPELG 1045 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCC-CCcchhhhhhhhcccccc--chhHHHHHHhcccccC
Confidence 8866 9999999999977643 2255666666666666654 334445555555555542 3344455555555555
Q ss_pred ccccc
Q 000797 1067 NLQVS 1071 (1280)
Q Consensus 1067 ~~fed 1071 (1280)
|-+++
T Consensus 1046 ~N~~~ 1050 (2067)
T KOG1822|consen 1046 PNGDK 1050 (2067)
T ss_pred CCCcc
Confidence 55543
No 215
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=44.09 E-value=8.2e+02 Score=31.50 Aligned_cols=184 Identities=15% Similarity=0.041 Sum_probs=105.8
Q ss_pred hhhhccccccchHHHHH---HHHHhhhCCCc--hhhHH-HHHHHHHHhhhCCCChhHHHHHHhhccCCcch----hhhhh
Q 000797 946 TKSINRQQRFQREAAAA---ALSEFVRYSGG--FDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQY 1015 (1280)
Q Consensus 946 ~~~L~s~~~~~R~~a~a---flsEll~~~~~--~~~l~-~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~----~v~~~ 1015 (1280)
...+++..++.|..++. ...++-.+..- ...++ ..+...+.......+..++.+++--+-+.+.. .-...
T Consensus 337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~ 416 (678)
T KOG1293|consen 337 CASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK 416 (678)
T ss_pred HHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34566777778766543 22333222211 12232 33555555555556677777776655444321 00001
Q ss_pred HhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcc
Q 000797 1016 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1095 (1280)
Q Consensus 1016 ~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~ 1095 (1280)
..-+...++..+-|++..|...+.+++-+++-.-+.-.-.-+--+...++-.+..+..+.+|+.+...+.++.-.+..+.
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 11223344555566777788888999988874433222222223455566677788889999999999999985344433
Q ss_pred hHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHh
Q 000797 1096 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1096 ~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1131 (1280)
+..+...+...++- -..+|+++.|...|-.-|+.
T Consensus 497 k~~~~~ki~a~~i~--~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 497 KFQLLAKIPANLIL--DLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred HHHHHHHhhHHHHH--HHHhCCCHHHHHHHHHHHHH
Confidence 44444444433322 24689999999999666655
No 216
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.19 E-value=40 Score=33.20 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=51.0
Q ss_pred hhhhhhcccccchhHHHHHHHhhhccCCchhhhc---chHHHHHHHHH----hh-hhccHHHHHHHHHHHHHHh
Q 000797 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKS----LL-DEQNLAVQKAISELIVVMA 67 (1280)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~~k~----~l-~d~~~kVr~al~~~I~ama 67 (1280)
++..||++++.+....||.+|-+++..+++.... +...+.+.++. .. .+++..||..+.++|.+-+
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5778999999999999999999999998876432 34455565552 22 4678999999999987654
No 217
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=42.93 E-value=2.5e+02 Score=38.52 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-------hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 000797 976 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-------HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1048 (1280)
Q Consensus 976 ~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-------~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~ 1048 (1280)
.+...+++...+++.|.+..||.-|.+-+..++.. ++.+....+...+..+.+ ... -.-.-|..|.++.-.
T Consensus 204 ~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~-s~~si~~ll~~l~~~ 281 (1549)
T KOG0392|consen 204 QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LSS-STASIMHLLDELCIE 281 (1549)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cch-hhHHHHHHHHHHhhh
Confidence 44567889999999999999999999999888754 444444444444444433 211 111223333333322
Q ss_pred CCcccc---hhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcc--hHH---------HHHHHHHhHHHHHHhc
Q 000797 1049 SSKDAV---EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ--REA---------FLEQIHAMLPRLILHI 1114 (1280)
Q Consensus 1049 l~~~~~---~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~--~~~---------~~eqv~~~LvpLLlHL 1114 (1280)
..-..+ -+.-..|+.++.||.-++=..+|.++....-.+.....+.. .-+ |..-++....+.|.|+
T Consensus 282 ~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~ 361 (1549)
T KOG0392|consen 282 NEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQILLLESFNEILDLS 361 (1549)
T ss_pred HHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhh
Confidence 100000 01114577888999999999999999999888876433332 222 2222445556777776
Q ss_pred cCCCHHH----HHHHHHHHHhhchhh
Q 000797 1115 YDDDLSV----RQACRNTLKQVAPFM 1136 (1280)
Q Consensus 1115 ~D~~~~V----~~ack~tL~~~a~~L 1136 (1280)
.+.-..| +.+|.+.+.++.+.+
T Consensus 362 ~~~~v~v~~~~k~a~~~~~~~~~l~~ 387 (1549)
T KOG0392|consen 362 EKVWVTVSKIEKTAAAYLLSWIYLLI 387 (1549)
T ss_pred hheeeehHHHHHHHHHHHHHHHHhhh
Confidence 6654322 456666666665543
No 218
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=42.01 E-value=87 Score=37.76 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=58.4
Q ss_pred hHHHHHHHhc-CCCC----chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHH-HHHhhhCCCch
Q 000797 901 LEMRKILARD-GEQN----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA-LSEFVRYSGGF 974 (1280)
Q Consensus 901 ~~~~~~l~~~-~~w~----~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~af-lsEll~~~~~~ 974 (1280)
.+..+++..+ -.|. ++..|.+-+..+- + -...|+..|..+|++.+++.=+..+++ ++|++++.|..
T Consensus 330 DeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rln----e----nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g 401 (442)
T KOG2759|consen 330 DEYKSELRSGRLEWSPVHKSEKFWRENADRLN----E----NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG 401 (442)
T ss_pred HHHHHHHHhCCcCCCccccccchHHHhHHHHh----h----ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH
Confidence 3444555544 3787 7777777776332 2 356788888899988887766554444 88999975553
Q ss_pred hhHHHH--HHHHHHhhhCCCChhHHHHHHhh
Q 000797 975 DSLLEQ--MVEALCRHVSDESPTVRGLCLRG 1003 (1280)
Q Consensus 975 ~~l~~~--~i~~L~~~l~D~~~~VR~laLrG 1003 (1280)
..++++ .-..+.+.++++||.||-=||.+
T Consensus 402 k~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 402 KAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred hHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 333322 22445555566777776666554
No 219
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.76 E-value=4.9e+02 Score=32.24 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhCChhHHHHHH-HHhhhhccccccchHHHHHHHHHhhhCCCchhhH--HHHHHHHHHhhhCCCC
Q 000797 923 IGDVAGCVSIKRPKEVQTICL-ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL--LEQMVEALCRHVSDES 993 (1280)
Q Consensus 923 V~lLar~l~~~~~~~~~~il~-~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l--~~~~i~~L~~~l~D~~ 993 (1280)
...|+..++....+....++. .+.++|+|+...||.+|...+.|.-........- .+.+...|...|.+|+
T Consensus 108 A~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 108 AKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 333333333333335566666 5999999999999999999999988764331111 3455666667666543
No 220
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.40 E-value=4.2e+02 Score=28.68 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=89.0
Q ss_pred HHhhcchHHHHHHHhcCCCCchhhHHHHH-----HHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhh
Q 000797 895 CECVGDLEMRKILARDGEQNDKEKWINLI-----GDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVR 969 (1280)
Q Consensus 895 l~~~~~~~~~~~l~~~~~w~~~~~~~~gV-----~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~ 969 (1280)
|...++.+..+.+++-+. ...-.-|| +.+|+.+....+.. ......+.....+++...|..|+.++.....
T Consensus 5 L~~~~d~~~a~~~~~~~~---~~~~~~GV~~p~lr~lak~~~~~~~~~-~~~~~l~~~L~~~~~~E~~~la~~il~~~~~ 80 (213)
T PF08713_consen 5 LEALADPKYAKFMQRYMK---EKDPFLGVRTPDLRKLAKDIYKELKLS-EELYELADELWESGYREERYLALLILDKRRK 80 (213)
T ss_dssp HHHC--HHHHHHHHHHTT---TSSB-----HHHHHHHHHHHHHHHCTS-HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGG
T ss_pred HHhcCCHHHHHHHHHhCC---CcccccCcCcHHHHHHHHHHHhhcccc-hHHHHHHHHHcCCchHHHHHHHHHHhHHHhh
Confidence 444456666666665432 12223343 34444444333322 3344455556666776667777766643111
Q ss_pred ---------------CCCch-------hhHH-------HHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHH
Q 000797 970 ---------------YSGGF-------DSLL-------EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1020 (1280)
Q Consensus 970 ---------------~~~~~-------~~l~-------~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL 1020 (1280)
....+ ..++ +...+.+.+|.+++|+-+|+.++.++-..... .+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l 157 (213)
T PF08713_consen 81 KLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELL 157 (213)
T ss_dssp G--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHH
T ss_pred hhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHH
Confidence 11110 1111 12567889999999999999999988655443 4557778
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 1021 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 1021 ~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
..+-..+.|.+.-|.+..-.+|+.+... +.+.+..++
T Consensus 158 ~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l 194 (213)
T PF08713_consen 158 EIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFL 194 (213)
T ss_dssp HHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 8888888887778888888888888765 333333333
No 221
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.52 E-value=1.6e+02 Score=40.95 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=82.4
Q ss_pred chhhHHHHHHHHHHHHHhhCCh---hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHHHHHhhhCC
Q 000797 915 DKEKWINLIGDVAGCVSIKRPK---EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSD 991 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~---~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~~L~~~l~D 991 (1280)
..+.-..+|+++++..+...++ ..++++.....-++.....-|+..+=.....+-+.+. ..+...-.+.-...|
T Consensus 272 ~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~---~~~~~~~~~~l~~~~ 348 (1266)
T KOG1525|consen 272 QEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS---IAKASTILLALRERD 348 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch---hhhHHHHHHHHHhhc
Confidence 4455667777666666665544 3577777777777777788888777777766655333 122222333334444
Q ss_pred CChhHHHHHHhhccCCcch--hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 000797 992 ESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1048 (1280)
Q Consensus 992 ~~~~VR~laLrGLg~l~~~--~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~ 1048 (1280)
.++.||+-...-.+..+.. +.. +.+.+|..+.+-+.|+--.|+.+||.+|..+...
T Consensus 349 ~D~~~rir~~v~i~~~~v~~~~l~-~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 349 LDEDVRVRTQVVIVACDVMKFKLV-YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred CChhhhheeeEEEEEeehhHhhhh-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4555554444444433332 222 2333888999999988899999999999999773
No 222
>PRK14707 hypothetical protein; Provisional
Probab=40.44 E-value=1.5e+03 Score=33.56 Aligned_cols=351 Identities=14% Similarity=0.052 Sum_probs=179.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHHhhhcccCCCCCCChHHHHHHHHHHHHH-------hhcchHHHHH
Q 000797 834 AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCE-------CVGDLEMRKI 906 (1280)
Q Consensus 834 aAt~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~~l~Alk~ll~-------~~~~~~~~~~ 906 (1280)
.|+.+|-+.|... ....+.+.||=+...|--+|=+-+ -.+|+.+..++=.-+. .-+-+++.+.
T Consensus 687 ~Aa~~LA~rLa~~----~~Lr~al~pQ~vAN~LNALSKWP~------~~~Cr~AA~~LA~rL~~~p~l~~a~~aQevANa 756 (2710)
T PRK14707 687 AAAGGMAERLAAD----PGLRKELNPVDVANALNALSKWPR------TPVCAAVASALAARVVAEPRLRKAFDAQQVATA 756 (2710)
T ss_pred HHHHHHHHHHhcC----hhhHhhcCHHHHHHHHhhhhcCCC------cHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHH
Confidence 5666676665553 233456888888877666644333 2346666665544332 2456777788
Q ss_pred HHhcCCCCchhhHHHHHHHHHHHHHhh-------CChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhH--
Q 000797 907 LARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL-- 977 (1280)
Q Consensus 907 l~~~~~w~~~~~~~~gV~lLar~l~~~-------~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l-- 977 (1280)
++-...|-+.+.-..+...||..++.. +|.++...++.|.+-- ..+.-|.+|.+.=.++.+.+.....+
T Consensus 757 LNALSKWPd~~~C~~AA~aLA~rLa~~~~Lr~aL~pQ~vAn~LNALSKWP--e~~~Cr~AA~~LA~rLa~dp~Lr~af~A 834 (2710)
T PRK14707 757 LNALSKWPDNQACAAAANTLAERQLREPDVRDVLKPREMTNALNALSKWP--DTPACAAAASALAARVADDPRLREAFDV 834 (2710)
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHhhCcchhhhcCHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHhcChhHHHhcCH
Confidence 887788987777777878788887754 2346777777777663 34445555555555554444332222
Q ss_pred --HHHHHHHHHhhhCCCChhHHHHHHhhcc-CCcch--hhhhhHhHHHHHHHhhccC-CChHHHHHHHHHHHHH------
Q 000797 978 --LEQMVEALCRHVSDESPTVRGLCLRGLV-QIPSI--HIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTI------ 1045 (1280)
Q Consensus 978 --~~~~i~~L~~~l~D~~~~VR~laLrGLg-~l~~~--~v~~~~~~lL~all~~L~d-~d~~V~~ea~~~L~~l------ 1045 (1280)
+-..+|.|.+| |+..+-.-+...|. .++.+ ..+.+.++-+...+++|.. +++..-..|..+|..-
T Consensus 835 Q~VANaLNALSKW---Pd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~ 911 (2710)
T PRK14707 835 QHVATVLNAMSKW---PDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPE 911 (2710)
T ss_pred HHHHHHHHHhccC---CCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHH
Confidence 22344555554 44444444444444 33332 2233445666777777765 3444444455444433
Q ss_pred -hccCCcccchhhhHHHHHHhcccccc--CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHH
Q 000797 1046 -LKSSSKDAVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR 1122 (1280)
Q Consensus 1046 -l~~l~~~~~~~~l~~l~~~lr~~fed--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~ 1122 (1280)
.+.++.+++++.+-- |.+ +.+.=|.++-.+-+.|+. ......+|..|-+.+..-=|- +=++...
T Consensus 912 Lrqal~aQ~VAN~LNA--------LSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALS--KWPd~~~- 978 (2710)
T PRK14707 912 LRKALSAHRVATALNA--------LSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALS--KWPDVPA- 978 (2710)
T ss_pred HHhhccHHHHHHHHhh--------hccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhc--cCCCchH-
Confidence 344555555443322 222 345666666666666654 222334444442222222111 1111111
Q ss_pred HHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHh-hhcCCC-hhHHHHH
Q 000797 1123 QACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPW-PIIQANA 1198 (1280)
Q Consensus 1123 ~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~-ylkS~~-~~IR~aA 1198 (1280)
|+.|-..+|.-|-- .+..-|. +. -+..+++ +.|=|. +.-|.+|
T Consensus 979 --c~~AA~aLA~rL~~~~~LR~al~---------------------------aQ----~vAN~LNALSKWPd~~~Cr~AA 1025 (2710)
T PRK14707 979 --GGEVVDALAERLVDEPALRNALD---------------------------PI----GMANALNALSKWLQMPVCAATV 1025 (2710)
T ss_pred --HHHHHHHHHHHHhccHHHHhhcc---------------------------hH----HHHHHHhhhhcCCCchHHHHHH
Confidence 22222222221110 1111000 00 1122222 223222 3356666
Q ss_pred HHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 000797 1199 IYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1248 (1280)
Q Consensus 1199 ~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1248 (1280)
..+.+.+.. +++.+...+...+-++|-. |.|=||...-..|+++|--
T Consensus 1026 ~~LA~rLa~--ep~L~~amdaQ~lan~LNA-LSKWPde~~Cr~Aa~aLA~ 1072 (2710)
T PRK14707 1026 EALAARLSN--DPGLCKALSSQGLTTVLNA-LCKWPEMPVCLAAASALAE 1072 (2710)
T ss_pred HHHHHHhcc--CHhhhhhcchHHHHHHHHh-hccCCCchhHHHHHHHHHH
Confidence 667777643 2334444566666777777 7777888888888887654
No 223
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=40.31 E-value=7.1e+02 Score=29.67 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=114.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhh------HH---HHH
Q 000797 911 GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDS------LL---EQM 981 (1280)
Q Consensus 911 ~~w~~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~------l~---~~~ 981 (1280)
.|+.+.+.-.+.|..|+..+..+ .++..++..|..-+=.-|.-++..|+-++....+... +. ..+
T Consensus 53 ~G~~e~ep~~e~v~qLa~Ei~~~------dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~pei 126 (335)
T PF08569_consen 53 YGDGEPEPNPEQVAQLAQEIYRS------DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEI 126 (335)
T ss_dssp HS-SS----HHHHHHHHHHHHHH------THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHh------CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHH
Confidence 36666666677788888877543 4555566666666656777777888888876444221 21 236
Q ss_pred HHHHHhhhCCCChhH-HHHHHhhccCCcchhhhh--hHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 982 VEALCRHVSDESPTV-RGLCLRGLVQIPSIHIHQ--YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 982 i~~L~~~l~D~~~~V-R~laLrGLg~l~~~~v~~--~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
+..|..+-.+|+... -..-||-...- +.+.+ .....+--+.+-.+..+=+|.-.|+..+..++..= ..-++.|+
T Consensus 127 l~~L~~gy~~~dial~~g~mlRec~k~--e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl 203 (335)
T PF08569_consen 127 LDILLRGYENPDIALNCGDMLRECIKH--ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFL 203 (335)
T ss_dssp HHHHHHGGGSTTTHHHHHHHHHHHTTS--HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHH
T ss_pred HHHHHHHhcCccccchHHHHHHHHHhh--HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 666777777666432 11111111000 00000 00111112333334445679999999999998651 22233443
Q ss_pred H----HHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHH--HHhHHHHHHhccCCCHHHHHHHHHHHHh
Q 000797 1059 L----NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI--HAMLPRLILHIYDDDLSVRQACRNTLKQ 1131 (1280)
Q Consensus 1059 ~----~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv--~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1131 (1280)
. ......-.+++++|.-.|.-|+.++|++.- .......|..=| -.+|--.+.+|+|....|+-.+-..|.-
T Consensus 204 ~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll--dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 204 SNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL--DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 2 333455677888999999999999999985 223333322221 2567777778999999988777555543
No 224
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.59 E-value=28 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred hHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccC
Q 000797 995 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1029 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d 1029 (1280)
.||..+..+||+++. +..++.++..|.|
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 689999999999976 4456667776654
No 225
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=8.9e+02 Score=30.56 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCCCh--HHHHHHHHHHHHHhccCCcccch
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDE--SVQLTAVSCLLTILKSSSKDAVE 1055 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~d~--~V~~ea~~~L~~ll~~l~~~~~~ 1055 (1280)
+.++..|.+.++.++...|..++-|||-.-.+ +. +.++..+.....+.|. +++.-|-.+|+.+.-.--..++.
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t 524 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT 524 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH
Confidence 34566777788888888888899998866544 22 3344444455555565 45555555666666544445554
Q ss_pred hh
Q 000797 1056 PI 1057 (1280)
Q Consensus 1056 ~~ 1057 (1280)
+.
T Consensus 525 s~ 526 (881)
T COG5110 525 SL 526 (881)
T ss_pred HH
Confidence 43
No 226
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.36 E-value=1.5e+03 Score=33.12 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=115.1
Q ss_pred hHHHHHHHHhhhhcc-ccccchHHHHHHHH--Hhhh------CCC-----chhhHHHHHHHHHHhhhCCCChhHHHHHHh
Q 000797 937 EVQTICLILTKSINR-QQRFQREAAAAALS--EFVR------YSG-----GFDSLLEQMVEALCRHVSDESPTVRGLCLR 1002 (1280)
Q Consensus 937 ~~~~il~~l~~~L~s-~~~~~R~~a~afls--Ell~------~~~-----~~~~l~~~~i~~L~~~l~D~~~~VR~laLr 1002 (1280)
+.-.|++++.-...+ ..-+++.+.+.+++ +++. ... +...+.......+.+.+-.++|..|-.+-.
T Consensus 819 ~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~e 898 (2067)
T KOG1822|consen 819 IRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAE 898 (2067)
T ss_pred HHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHH
Confidence 444555555444433 22367777777777 4332 211 122232335566777889999999999999
Q ss_pred hccCCcch-hhhhhHhHHHHHHHhhccCCChHHH-HHHHHHHHHHhccCCcccchhhhHHHHHHhcccccc-CChhhHHH
Q 000797 1003 GLVQIPSI-HIHQYATQVLSVILALLDDLDESVQ-LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-MNVKMRRN 1079 (1280)
Q Consensus 1003 GLg~l~~~-~v~~~~~~lL~all~~L~d~d~~V~-~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fed-e~~~vR~a 1079 (1280)
.++.++.. .-..+...+..-+++.+-+.++.|. ..-..+|+.|....+.-+-+..+.+=...+..+-.| +.+.|+..
T Consensus 899 a~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~Vqtw 978 (2067)
T KOG1822|consen 899 ALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTW 978 (2067)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhh
Confidence 99998753 2222334445556666666555544 555667777766655444443333322233344444 55699999
Q ss_pred HHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHH
Q 000797 1080 AFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQA 1124 (1280)
Q Consensus 1080 Ai~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~a 1124 (1280)
|..+..-++.. .++-+..+.++.+..+..+++.-.+-..+|.+.
T Consensus 979 SL~al~~i~~s-~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~ 1022 (2067)
T KOG1822|consen 979 SLHALALILDS-SGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQC 1022 (2067)
T ss_pred HHHHHHHHHcC-CCceehhhHHHHHHHHHHHcCCCCcchhhhhhh
Confidence 99998887763 345567788888888888887666666666653
No 227
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=38.65 E-value=3.4e+02 Score=34.20 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=72.7
Q ss_pred HHHHHHhhhCCC--ChhHHHHHHhhc---cCCcch----hhhhhHhHHHHHHHhhccC--------CChHHHHHHHHHHH
Q 000797 981 MVEALCRHVSDE--SPTVRGLCLRGL---VQIPSI----HIHQYATQVLSVILALLDD--------LDESVQLTAVSCLL 1043 (1280)
Q Consensus 981 ~i~~L~~~l~D~--~~~VR~laLrGL---g~l~~~----~v~~~~~~lL~all~~L~d--------~d~~V~~ea~~~L~ 1043 (1280)
++.+...++..+ +..+|.++++=+ .+...+ .+....+.++..+...+++ .+...+-.+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 344555666666 667777777655 544332 5566677777777777731 13457788888888
Q ss_pred HHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1044 TILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1044 ~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
.|+.....-.... ..++..++.-++++.+++|.+.-++++.++.
T Consensus 400 ~L~~~~p~l~~~d--~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLFSKD--LSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCccccccc--HHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 8887765433222 4556666655689999999999999999986
No 228
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=38.53 E-value=8.7e+02 Score=31.82 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=44.2
Q ss_pred hCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHH--HHHHHHhhhCCCChhHHHHHHhhccCCcc
Q 000797 933 KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPS 1009 (1280)
Q Consensus 933 ~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~--~i~~L~~~l~D~~~~VR~laLrGLg~l~~ 1009 (1280)
+..+.++.++ .+|.++++.-..-|.+++..+..+.........+ -+..|..-+..++..|.+-|.=+|-|+..
T Consensus 230 w~d~~lpe~i----~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 230 WRDPTLPEVI----SMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred ccccccHHHH----HHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 3344555555 4444555554444544444444333333333333 46788899999999999998888888854
No 229
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=36.60 E-value=3e+02 Score=36.69 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=100.0
Q ss_pred cCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhch-hhhhhHHhhhcccCC
Q 000797 1071 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP-FMEIGVYGIFNSHCF 1149 (1280)
Q Consensus 1071 de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~-~L~w~l~~l~~~~~~ 1149 (1280)
|+-+.||.+|...|.++.....+.....+ |-.++---.|+--.++++.-.++.+-.. +-.- --..
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~sI-------l~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~----~~tt--- 548 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFSI-------LCATINSEMDEKFSAVESLEDLNVSGKAPSSKT----KKTT--- 548 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHHH-------HHHhcCCccccchhHHHhchhhhhcccCccccc----ccch---
Confidence 45689999999999999875444332221 2222234567777888776666544211 1111 0000
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHH-Hhhhc-CCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHH
Q 000797 1150 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGST-IQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLV 1227 (1280)
Q Consensus 1150 ~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~-l~ylk-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~ 1227 (1280)
+.-.+-++..-|.---++.+.-.++...+..- +.... +.-.++|.+|...+-..+.+.+.+-. .|.+...|+
T Consensus 549 --~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~----fe~~L~iLq 622 (1529)
T KOG0413|consen 549 --DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK----FEVVLSILQ 622 (1529)
T ss_pred --hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc----chhHHHHHH
Confidence 11112244555555566666666777655543 34555 56677999999887777766664443 355677789
Q ss_pred HHhccCCChhhHHHHHHHHHHHHH
Q 000797 1228 VKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1228 ~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
+ |=+||-..||..++++|+.+..
T Consensus 623 ~-lCrd~~vsvrk~~~~Sltel~~ 645 (1529)
T KOG0413|consen 623 M-LCRDRMVSVRKTGADSLTELML 645 (1529)
T ss_pred H-HhcCcchHHHHHHHHHHHHHHh
Confidence 8 8899999999999999998763
No 230
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=36.02 E-value=47 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1222 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1222 ~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
.++.|.. |++++++.|+..|..||+++.
T Consensus 13 ~i~~L~~-ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVE-LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHH-HHcCCCHHHHHHHHHHHHHHc
Confidence 4667888 677899999999999998873
No 231
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.68 E-value=2.7e+02 Score=28.50 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccC-CC-hh
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-AD-AI 1237 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~D-pd-p~ 1237 (1280)
.+-++|-.+-.. ++....-+...-..++++.+.+...|..++..++++..+....++......+.|.. +..+ +. +.
T Consensus 25 ~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~-l~~~~~~~~~ 102 (140)
T PF00790_consen 25 LILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK-LIKSKKTDPE 102 (140)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH-HHHHTTTHHH
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH-HHccCCCCch
Confidence 334678855444 77777788888889999999999999999999999988777666666667777777 4443 22 22
Q ss_pred --hHHHHHHHHHHHHH
Q 000797 1238 --VRATCSSSLGWLLK 1251 (1280)
Q Consensus 1238 --VR~~Aa~aL~~l~k 1251 (1280)
||.++.+-+.....
T Consensus 103 ~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 103 TPVKEKILELLQEWAE 118 (140)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 89888877655543
No 232
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=35.68 E-value=4.2e+02 Score=32.43 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc--hhhHHHHHHHHHHhhhCCCCh
Q 000797 917 EKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESP 994 (1280)
Q Consensus 917 ~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~--~~~l~~~~i~~L~~~l~D~~~ 994 (1280)
..|+.-+.-.....+.+.|.....++..+..+=-.++..-.+.-+-.+.+++...+. .......+...+...++.++.
T Consensus 232 ~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~ 311 (409)
T PF01603_consen 232 SSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHF 311 (409)
T ss_dssp GGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 345555554666667777877777887777776666666666666677777765433 334556788999999999999
Q ss_pred hHHHHHHhhccCCcch-hhhhhHhHHHHHHHhhccCC-----ChHHHHHHHHHHHHHhccCCcc
Q 000797 995 TVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDL-----DESVQLTAVSCLLTILKSSSKD 1052 (1280)
Q Consensus 995 ~VR~laLrGLg~l~~~-~v~~~~~~lL~all~~L~d~-----d~~V~~ea~~~L~~ll~~l~~~ 1052 (1280)
.|-.-|+.=..|=... -+..+...++|.+...|... +..|...|..+|.-+.+ ++.+
T Consensus 312 qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~-~d~~ 374 (409)
T PF01603_consen 312 QVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME-MDPK 374 (409)
T ss_dssp HHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT-TSHH
T ss_pred HHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hCHH
Confidence 9988887766654322 44566778888888888773 35677777777776664 4443
No 233
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.62 E-value=3.3e+02 Score=27.63 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccC---CCh
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS---ADA 1236 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~D---pdp 1236 (1280)
..-++|-.+- +.++....-+...-..++++.+.+.-.|...+..++++.......++....-...|.. +..+ .++
T Consensus 20 ~il~icd~I~-~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~-l~~~~~~~~~ 97 (133)
T cd03561 20 LNLELCDLIN-LKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK-IAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH-HhCCCCCCCH
Confidence 4446666554 3355666666666779999999999999999999999887655555555444445888 5654 588
Q ss_pred hhHHHHHHHHHHHH
Q 000797 1237 IVRATCSSSLGWLL 1250 (1280)
Q Consensus 1237 ~VR~~Aa~aL~~l~ 1250 (1280)
.||.++.+.+....
T Consensus 98 ~Vk~kil~ll~~W~ 111 (133)
T cd03561 98 KVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888865544
No 234
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.38 E-value=6.2e+02 Score=28.84 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=51.1
Q ss_pred cccccc--CChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHh-ccCCCHHHHHHH-HHHHHhhchhhhhhHH
Q 000797 1066 RNLQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQAC-RNTLKQVAPFMEIGVY 1141 (1280)
Q Consensus 1066 r~~fed--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ac-k~tL~~~a~~L~w~l~ 1141 (1280)
..++++ -+.-+|.+|+++++.++..+. . -++++.+.+..++-. +...+..|-..= ...+--++.-|--.++
T Consensus 117 ~~li~~~~~~~yvR~aa~~aL~~l~~~~~--~---~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~ 191 (249)
T PF06685_consen 117 KELIEDPDADEYVRMAAISALAFLVHEGP--I---SREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIR 191 (249)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHcCC--C---CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence 344555 347799999999999997332 1 256777777777764 544433322211 1112222233444667
Q ss_pred hhhcccCCCCCCCCChHHHHHHH
Q 000797 1142 GIFNSHCFNSDHRSDYETFVRDL 1164 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~~~ 1164 (1280)
.+|........ ..+.+++-..+
T Consensus 192 ~~f~~~lVd~~-~i~~e~ve~~l 213 (249)
T PF06685_consen 192 KAFEDGLVDPS-FIDLEDVEEAL 213 (249)
T ss_pred HHHHcCCCCcc-ccCHHHHHHHH
Confidence 77777644332 34555554433
No 235
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.04 E-value=3.3e+02 Score=27.73 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCCh--h
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA--I 1237 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp--~ 1237 (1280)
..-++|-.+-+. ++.....+...-.-++++.+.+..-|...+..++++.......++......+.|.. +..++.+ .
T Consensus 20 ~~l~icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~-l~~~~~~~~~ 97 (133)
T smart00288 20 LILEICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK-LIKPKYPLPL 97 (133)
T ss_pred HHHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH-HHcCCCCcHH
Confidence 344777766554 66677777777779999999999999999999999987666666667777788888 5655433 3
Q ss_pred hHHHHHHHHHHHH
Q 000797 1238 VRATCSSSLGWLL 1250 (1280)
Q Consensus 1238 VR~~Aa~aL~~l~ 1250 (1280)
||.++.+.+..-.
T Consensus 98 Vk~kil~li~~W~ 110 (133)
T smart00288 98 VKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877765544
No 236
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.45 E-value=1.1e+02 Score=37.06 Aligned_cols=88 Identities=16% Similarity=0.053 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC-hhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCCh
Q 000797 1158 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1236 (1280)
Q Consensus 1158 ~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp 1236 (1280)
+.|+++=...|-+++-+ .+...+.+++++. |.+=+-|+.=||..++++|.-.. -++.-..-+++.+ |..-+||
T Consensus 350 e~FW~eNa~rlnennye----llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~-Llnh~d~ 423 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYE----LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMN-LLNHEDP 423 (442)
T ss_pred cchHHHhHHHHhhccHH----HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHH-HhcCCCc
Confidence 55777777777665544 4455666787777 67888899899999999994332 1222223455667 7889999
Q ss_pred hhHHHHHHHHHHHHH
Q 000797 1237 IVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1237 ~VR~~Aa~aL~~l~k 1251 (1280)
.||--|-.|...+--
T Consensus 424 ~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 424 EVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999777643
No 237
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=34.09 E-value=5.1e+02 Score=30.63 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhccccccchHHHHHHHHHhhh-CCCc-hhhHHHH---HHHHHHhhh
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVR-YSGG-FDSLLEQ---MVEALCRHV 989 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~-~~~~-~~~l~~~---~i~~L~~~l 989 (1280)
....+..|.. +++.+.+.+ +..+...|++.......+++-.+++++. ..+. ...+.+. ..+.+.+-+
T Consensus 39 ~~~~~~~g~~-l~~~iL~~~-------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll 110 (330)
T PF11707_consen 39 DLSFQSYGLE-LIRSILQNH-------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLL 110 (330)
T ss_pred chhHHHHHHH-HHHHHHHHH-------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHh
Q ss_pred CCCC-------------hhHHHHHHh-hccCCcchhhhhhHhHH-----HHHHHhhccCCChHHHHHHHHHHH-HHhccC
Q 000797 990 SDES-------------PTVRGLCLR-GLVQIPSIHIHQYATQV-----LSVILALLDDLDESVQLTAVSCLL-TILKSS 1049 (1280)
Q Consensus 990 ~D~~-------------~~VR~laLr-GLg~l~~~~v~~~~~~l-----L~all~~L~d~d~~V~~ea~~~L~-~ll~~l 1049 (1280)
.-.. +.||...++ -|.-+...+..-...-+ +.++..+|.+.+.+++...+.+|. +|+..-
T Consensus 111 ~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~ 190 (330)
T PF11707_consen 111 TPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS 190 (330)
T ss_pred ccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC
Q ss_pred ---CcccchhhhHHHHHHhccccccCCh----hhHHHHHHHHHHHh
Q 000797 1050 ---SKDAVEPILLNLSVRLRNLQVSMNV----KMRRNAFAAFGALS 1088 (1280)
Q Consensus 1050 ---~~~~~~~~l~~l~~~lr~~fede~~----~vR~aAi~lfG~L~ 1088 (1280)
......-+-.....+|..+++.+++ .++..+...+-.++
T Consensus 191 ~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 191 SVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred CCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
No 238
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=34.08 E-value=4.3e+02 Score=26.70 Aligned_cols=91 Identities=5% Similarity=0.039 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhc-CHHHHHHHHHHHhccCCCh--
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL-FYTQVFGLLVVKLSQSADA-- 1236 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~-~~e~~~~~L~~~Ll~Dpdp-- 1236 (1280)
-+++|++.-.. .++.....+.-...-+++..++||.=|-..|-++...-+++....+ ..-.++..+.. -..-|||
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~-f~g~~Dp~~ 98 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECAN-YKGPPDPLK 98 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHH-cCCCCCccc
Confidence 44565554443 5666777777777788888899999999999999886654333221 12335566666 5665555
Q ss_pred ------hhHHHHHHHHHHHHHH
Q 000797 1237 ------IVRATCSSSLGWLLKS 1252 (1280)
Q Consensus 1237 ------~VR~~Aa~aL~~l~k~ 1252 (1280)
.||..|.+++..++-+
T Consensus 99 Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhcc
Confidence 8999999999988754
No 239
>PRK14707 hypothetical protein; Provisional
Probab=33.26 E-value=1.9e+03 Score=32.64 Aligned_cols=338 Identities=12% Similarity=0.014 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHH-------HhhcchHHHHHHHhcCCCCchhhHHHHHHHHHHHHHhh-------CChhHHHHHHHHhhh
Q 000797 883 PLRAILTSFQAFC-------ECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTKS 948 (1280)
Q Consensus 883 P~~~~l~Alk~ll-------~~~~~~~~~~~l~~~~~w~~~~~~~~gV~lLar~l~~~-------~~~~~~~il~~l~~~ 948 (1280)
.|+.+..+|=.-+ ..-.-+++.+.|.-...|-+.+.-..++..||+.++.. ++..+...++.|.+-
T Consensus 894 ~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKW 973 (2710)
T PRK14707 894 VCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKW 973 (2710)
T ss_pred HHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccC
Confidence 4666666654433 22244566677776678988788888888899988753 334677777777666
Q ss_pred hccccccchHHHHHHHHHhhhCCCchhhH----HHHHHHHHHhhhCCCChhHHHHHHhhccCCcch--hhhhhHhHHHHH
Q 000797 949 INRQQRFQREAAAAALSEFVRYSGGFDSL----LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLSV 1022 (1280)
Q Consensus 949 L~s~~~~~R~~a~aflsEll~~~~~~~~l----~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~--~v~~~~~~lL~a 1022 (1280)
-. .+.-|.+|.+.-..|.+.+.....+ +-.++|.|.+|-. .+.-|..+.+=-+.|+.+ .-+.+-.+-+..
T Consensus 974 Pd--~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd--~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan 1049 (2710)
T PRK14707 974 PD--VPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQ--MPVCAATVEALAARLSNDPGLCKALSSQGLTT 1049 (2710)
T ss_pred CC--chHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCC--chHHHHHHHHHHHHhccCHhhhhhcchHHHHH
Confidence 33 3345556666666665555432222 2335667766653 333444444433445433 223334455666
Q ss_pred HHhhccC-CChHHHHHHHHHHHHH-------hccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCc
Q 000797 1023 ILALLDD-LDESVQLTAVSCLLTI-------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1094 (1280)
Q Consensus 1023 ll~~L~d-~d~~V~~ea~~~L~~l-------l~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~ 1094 (1280)
.+++|.. ++++.-..|...|..- ...++.+++++.+-.++ ..- +.+.-|.++..+-+.++. .+.
T Consensus 1050 ~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLS----KWP--~~~~Cr~Aa~~LA~rL~~--~~~ 1121 (2710)
T PRK14707 1050 VLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALS----KWP--DSPVCAAAASALAKRLTD--DAG 1121 (2710)
T ss_pred HHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHh----cCC--CcHHHHHHHHHHHHHhcc--ccc
Confidence 6677765 3444444444444432 22355555554443221 111 557788888888888874 333
Q ss_pred chHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh--hHHhhhcccCCCCCCCCChHHHHHHHHHHHHHhC
Q 000797 1095 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1172 (1280)
Q Consensus 1095 ~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w--~l~~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~ 1172 (1280)
....|--|-+..+.-=+-..-+++ .|+.+-..+|.-|.+ .+..-++-
T Consensus 1122 l~~~fd~q~vA~~LNALSKWp~~~-----~cr~Aa~~LA~RL~~d~~Lr~a~~~-------------------------- 1170 (2710)
T PRK14707 1122 LRHVFDPINVSQALNALSKWPGTQ-----ACESAIDVLAATLANAPGLRNALSA-------------------------- 1170 (2710)
T ss_pred hhccCCHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHhccchhhhhhcCH--------------------------
Confidence 344444443333222222222222 455544444433222 22222211
Q ss_pred cchHHHHHHHHHhhhcCCChh-HHHHHHHHHHHhhc-cCchhhhhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000797 1173 PSRIDSYMGSTIQAFEAPWPI-IQANAIYFSSSILC-LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1173 ~~~~~~~l~~~l~ylkS~~~~-IR~aA~~fiG~l~~-~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
..+- +..-.+.|=|..+ -|+++..+++.+.. ..+-....+.+.-++-+++-+ +..+.+...-..++-+..+|+
T Consensus 1171 -Q~vA---n~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sR-l~~~~~ed~~~~~~~a~~~L~ 1245 (2710)
T PRK14707 1171 -QGVA---IALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSR-LSPLDEEDDEQFRTLAVAKLQ 1245 (2710)
T ss_pred -HHHH---HHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHHHH
Confidence 1111 1111244444433 56655656666664 344444455667888999998 665544444444466667999
Q ss_pred HHhhhccccccccccccc
Q 000797 1251 KSINSHSWRSTRLERVES 1268 (1280)
Q Consensus 1251 k~~~~~~~~~~~~~~~~~ 1268 (1280)
+-..+.--+-.+|+.+|.
T Consensus 1246 ~LA~HL~l~~erfe~A~~ 1263 (2710)
T PRK14707 1246 AMAGHLDLHRELFASASV 1263 (2710)
T ss_pred HHHHHHhhcHHHHhhccc
Confidence 988888777777776654
No 240
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=32.99 E-value=78 Score=31.94 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=45.0
Q ss_pred ChhhhhhcccccchhHHHHHHHhhhccCCchhh---hcchHHHHHHHHHhh--------hhccHHHHHHHHHHHHHHh
Q 000797 1 MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEAW---HSKRPLLLEAVKSLL--------DEQNLAVQKAISELIVVMA 67 (1280)
Q Consensus 1 ~fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~---~~k~~~i~~~~k~~l--------~d~~~kVr~al~~~I~ama 67 (1280)
+||+.+|+.++-.++.++|.||+|++....+.. --+...+|...+.-- .+++-+||.+-=+++.++-
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 489999999998999999999999998755432 223444555444332 2345577776666665553
No 241
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=32.17 E-value=6.5e+02 Score=35.49 Aligned_cols=226 Identities=16% Similarity=0.199 Sum_probs=126.1
Q ss_pred CCC-ChhHHHHHHhhccCCcchhhhhh-----HhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHH
Q 000797 990 SDE-SPTVRGLCLRGLVQIPSIHIHQY-----ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1063 (1280)
Q Consensus 990 ~D~-~~~VR~laLrGLg~l~~~~v~~~-----~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~ 1063 (1280)
+|+ +-..|++++-+|.||..++++.. ....+.|++.-|...-+++ .+++..||..|.|..=...- .+
T Consensus 360 nd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL----~QV~AsvLRNLSWRAD~nmK-kv-- 432 (2195)
T KOG2122|consen 360 NDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL----LQVYASVLRNLSWRADSNMK-KV-- 432 (2195)
T ss_pred CcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH----HHHHHHHHHhccccccccHH-HH--
Confidence 443 66789999999999998754321 2566888888887654443 34556677777776422111 10
Q ss_pred HhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhhh--HH
Q 000797 1064 RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIG--VY 1141 (1280)
Q Consensus 1064 ~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w~--l~ 1141 (1280)
|++ -..| .++...+ ....++.-..-|+.+|--|--|..+.-.++.. .--||.-++..|-.+ -+
T Consensus 433 -LrE-----~GsV-----taLa~~a---l~~~kEsTLKavLSALWNLSAHcteNKA~iCa-VDGALaFLVg~LSY~~qs~ 497 (2195)
T KOG2122|consen 433 -LRE-----TGSV-----TALAACA---LRNKKESTLKAVLSALWNLSAHCTENKAEICA-VDGALAFLVGTLSYEGQSN 497 (2195)
T ss_pred -HHh-----hhhH-----HHHHHHH---HHhcccchHHHHHHHHhhhhhcccccchhhhc-ccchHHHHHhhccccCCcc
Confidence 010 0111 1111111 12234444566777777777787765444321 111222222222110 00
Q ss_pred hhhcccCCCCCCCCChHHHHHHHHHHHHHhCcc----hHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCc----hhh
Q 000797 1142 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS----RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD----DQH 1213 (1280)
Q Consensus 1142 ~l~~~~~~~~~~~l~~~~f~~~~~~~L~~~~~~----~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~----~~~ 1213 (1280)
.+ + ..+.+ +-+++.+..++....+- +-+-.+...++.|||..-.|=.||. |-|-+... +|+
T Consensus 498 tL--a-IIEsa-----GGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC---GTLWNLSAR~p~DQq 566 (2195)
T KOG2122|consen 498 TL--A-IIESA-----GGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC---GTLWNLSARSPEDQQ 566 (2195)
T ss_pred hh--h-hhhcC-----ccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch---hhhhhhhcCCHHHHH
Confidence 00 0 01111 22666666666544432 2233577788899999999999988 66655322 222
Q ss_pred hhhcCHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000797 1214 ILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1214 ~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1251 (1280)
. +-..-.+..|+. |.+....++-+.++.||.++.-
T Consensus 567 ~--LwD~gAv~mLrn-LIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 567 M--LWDDGAVPMLRN-LIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred H--HHhcccHHHHHH-HHhhhhhhhhhhHHHHHHHHhc
Confidence 2 222235567888 7889999999999999998873
No 242
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=32.01 E-value=2e+02 Score=33.86 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=62.1
Q ss_pred HHHHHHhhhhcc---ccccchHHHHHHHHHhhhCCCc-----hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcch-
Q 000797 940 TICLILTKSINR---QQRFQREAAAAALSEFVRYSGG-----FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1010 (1280)
Q Consensus 940 ~il~~l~~~L~s---~~~~~R~~a~aflsEll~~~~~-----~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~- 1010 (1280)
.+++...++.+. .++.+|..=..++..+.+++.. .....+.+++.+.-+.++++..|-..+|+.|..+...
T Consensus 117 ~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 117 AVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 333334444443 2334444444444444443322 1344567889999999999999999999999987532
Q ss_pred -h---------hhhhHhHHHHHHHhhccCCCh-HHHHHHHHHHHHHhc
Q 000797 1011 -H---------IHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILK 1047 (1280)
Q Consensus 1011 -~---------v~~~~~~lL~all~~L~d~d~-~V~~ea~~~L~~ll~ 1047 (1280)
+ .+.|.-.++.-++.-+-|++- ..-..-...|.+++.
T Consensus 197 ~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 197 SKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 1 133444556666666666552 233444455566553
No 243
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=87 Score=34.43 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=72.0
Q ss_pred hHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhc--cCCc
Q 000797 1017 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF--GVGS 1094 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~--~~~~ 1094 (1280)
...||.+.+||.+.+-+-..-|-.+...+|-..+ +.+-++++++..-|+.-|..-+.+|-..+...+-.+... +.|.
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 5669999999999888888888888888888766 677899999999999999999999999999999988764 3466
Q ss_pred chHHHHHHHH
Q 000797 1095 QREAFLEQIH 1104 (1280)
Q Consensus 1095 ~~~~~~eqv~ 1104 (1280)
.--||..|++
T Consensus 192 aLVPfYRQlL 201 (262)
T KOG3961|consen 192 ALVPFYRQLL 201 (262)
T ss_pred hhhhHHHHhh
Confidence 6666666643
No 244
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=31.86 E-value=5.5e+02 Score=29.48 Aligned_cols=71 Identities=8% Similarity=0.013 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCc-hhhHHHHHHHHHHhhh-CCCChhHHHHHHhhccCCc
Q 000797 938 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIP 1008 (1280)
Q Consensus 938 ~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~~~l~~~~i~~L~~~l-~D~~~~VR~laLrGLg~l~ 1008 (1280)
.+.+|=...-.|+|.+|..-+.|+-.+.+++..... .....+.+....-... ..+-+.+..+.+|||-+-.
T Consensus 5 ~pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~ 77 (262)
T PF14225_consen 5 FPQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS 77 (262)
T ss_pred hhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC
Confidence 456666667778888898889999999998886533 2222222222222222 1456778888888887544
No 245
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.92 E-value=4.5e+02 Score=27.28 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccC-CChhh
Q 000797 1160 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-ADAIV 1238 (1280)
Q Consensus 1160 f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~D-pdp~V 1238 (1280)
..-++|-..-.. ++....-+.....-++++.+++.--|..++..++++-......++......+.|.. +..+ .++.|
T Consensus 20 ~il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k-l~~~~~~~~V 97 (144)
T cd03568 20 LILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK-LINDRVHPTV 97 (144)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH-HhcccCCHHH
Confidence 344777766654 66666677777778889999999999999999999988766666777888888998 7777 88899
Q ss_pred HHHHHHHHHHH
Q 000797 1239 RATCSSSLGWL 1249 (1280)
Q Consensus 1239 R~~Aa~aL~~l 1249 (1280)
+.++.+-+...
T Consensus 98 k~kil~li~~W 108 (144)
T cd03568 98 KEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHH
Confidence 98877765543
No 246
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=28.70 E-value=1.5e+02 Score=31.19 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhCCh-hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchh---hHHHHHHHHHHhhhC--CCC
Q 000797 920 INLIGDVAGCVSIKRPK-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD---SLLEQMVEALCRHVS--DES 993 (1280)
Q Consensus 920 ~~gV~lLar~l~~~~~~-~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~---~l~~~~i~~L~~~l~--D~~ 993 (1280)
..+.-.+++.| +..+. -...+-.++...+..++....+.++.+++.+...+++.. ...+.+++.+..... .++
T Consensus 23 ~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~ 101 (157)
T PF11701_consen 23 SHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKD 101 (157)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCC
Confidence 33333356665 33332 333445555556666667788899999999998877632 112445666666666 678
Q ss_pred hhHHHHHHhhccCCcch-hhhh-hHhHHHHHHHhhcc-CCChH-HHHHHHHHHHHH
Q 000797 994 PTVRGLCLRGLVQIPSI-HIHQ-YATQVLSVILALLD-DLDES-VQLTAVSCLLTI 1045 (1280)
Q Consensus 994 ~~VR~laLrGLg~l~~~-~v~~-~~~~lL~all~~L~-d~d~~-V~~ea~~~L~~l 1045 (1280)
..+...+++-|..-..+ ..+. -.+..++-+-+++. +.|+. |...|..+|-|+
T Consensus 102 ~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 102 RKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 88888888877755443 2211 12333445555553 23344 677777777653
No 247
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=28.02 E-value=3.9e+02 Score=31.20 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhCCCChhHHHH-HHhhcc--------CCcch-----hhhhhHhHHHHHHHhhccCCChHHHHHHHHHH
Q 000797 977 LLEQMVEALCRHVSDESPTVRGL-CLRGLV--------QIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCL 1042 (1280)
Q Consensus 977 l~~~~i~~L~~~l~D~~~~VR~l-aLrGLg--------~l~~~-----~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L 1042 (1280)
.+..++..|.+|-.|++.--+.. ..-|.+ ....+ -+.+.+..+..++..+|+..+---+..|+..|
T Consensus 172 Fl~~iL~~l~~W~~d~~~f~~e~~~~pGF~~~~~~~~~~~l~~~~f~~~~~kWh~~i~~~l~~~L~s~eym~iRNai~vL 251 (298)
T PF11262_consen 172 FLNEILEDLNRWHRDEEVFEKECANLPGFATTFKSKPSDFLSYEDFRKVLYKWHKRITKALISCLESKEYMHIRNAIIVL 251 (298)
T ss_pred HHHHHHHHHHHHHhChHHHHHHccCCCchhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34556777888888877444443 011111 11111 45677889999999999877777889999999
Q ss_pred HHHhccCCcccchhhhHHHHHHhccccccC---ChhhHHHHHHHHHHH
Q 000797 1043 LTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRRNAFAAFGAL 1087 (1280)
Q Consensus 1043 ~~ll~~l~~~~~~~~l~~l~~~lr~~fede---~~~vR~aAi~lfG~L 1087 (1280)
.+|++.-+- +......+..++....++| +++++.+|-+++|.|
T Consensus 252 ~~i~~~FP~--v~~~~~~l~~~l~~l~~~e~~~R~Dlk~~a~~~~~~L 297 (298)
T PF11262_consen 252 KKISPVFPV--VDDHGEKLEKALEKLLEEEKGKREDLKLLANSYLGHL 297 (298)
T ss_pred HHHHhhCCC--cHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhc
Confidence 999986543 2333344445555555555 899999999999976
No 248
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.65 E-value=1.2e+02 Score=31.54 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=52.3
Q ss_pred hhhhhcccccchhHHHHHHHhhhccCCchhhhc---chHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhh
Q 000797 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLAVQKAISELIVVMAS 68 (1280)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~~k~~l~d-~~~kVr~al~~~I~ama~ 68 (1280)
+..||.++|.+.-.-||.+|-.++..++..+.. .+ ..+..++.++.+ ...+||.-++++|.+.+.
T Consensus 42 l~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 42 IMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999986652 34 344556666665 888999999999999873
No 249
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=27.62 E-value=5.9e+02 Score=32.96 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=77.5
Q ss_pred hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccc-cc----------cCChhhHHH
Q 000797 1011 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QV----------SMNVKMRRN 1079 (1280)
Q Consensus 1011 ~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~-fe----------de~~~vR~a 1079 (1280)
..+.+.+..+.-+.+.+.+.+..+..++..++.++...+.|..-++++. ++.-.-+. |- +.++-+-..
T Consensus 239 ~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~ 317 (993)
T COG5234 239 ESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHG 317 (993)
T ss_pred chhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHH
Confidence 4566667777777777777788899999999999999999988887765 55444332 11 244556666
Q ss_pred HHHHHHHHhhccCCcc-------------------------------------------hHHHHHHHHHhHHHHHHh--c
Q 000797 1080 AFAAFGALSNFGVGSQ-------------------------------------------REAFLEQIHAMLPRLILH--I 1114 (1280)
Q Consensus 1080 Ai~lfG~L~~~~~~~~-------------------------------------------~~~~~eqv~~~LvpLLlH--L 1114 (1280)
+|.-|| +++.+.-+- ...+-++...+|.-|++. +
T Consensus 318 ~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 318 AILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 666666 443111100 112223333344444443 7
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 000797 1115 YDDDLSVRQACRNTLKQV 1132 (1280)
Q Consensus 1115 ~D~~~~V~~ack~tL~~~ 1132 (1280)
-|++..||.++..||...
T Consensus 397 FDpel~vRr~a~Aal~E~ 414 (993)
T COG5234 397 FDPELNVRRAATAALFEV 414 (993)
T ss_pred cCchhhhhhHHHHHHHHH
Confidence 799999999888887654
No 250
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.42 E-value=1.3e+02 Score=30.53 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=51.7
Q ss_pred hhhhhcccccchhHHHHHHHhhhccCCchhhhc---chHHHHHHHHHhhh---hccHHHHHHHHHHHHHHhh
Q 000797 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLD---EQNLAVQKAISELIVVMAS 68 (1280)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~~k~~l~---d~~~kVr~al~~~I~ama~ 68 (1280)
|..+|+.++.....-||.+|-.++..+++.+.. .+.++.+ +..++. ..+..||+-++++|...+.
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~-l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE-LVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999886542 3455556 445553 4688999999999998875
No 251
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.70 E-value=1.2e+02 Score=30.52 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=14.1
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHh
Q 000797 1022 VILALLDDLDESVQLTAVSCLLTIL 1046 (1280)
Q Consensus 1022 all~~L~d~d~~V~~ea~~~L~~ll 1046 (1280)
.+++.+.+.|++|..+|+.++++++
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3445555556666666666666655
No 252
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=25.71 E-value=85 Score=24.02 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh
Q 000797 1019 VLSVILALLDDLDESVQLTAVSCLLTIL 1046 (1280)
Q Consensus 1019 lL~all~~L~d~d~~V~~ea~~~L~~ll 1046 (1280)
.++.++..+.+.+.+++..|+.+|++|.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888887778889999999998874
No 253
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.15 E-value=1.5e+02 Score=30.64 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=51.5
Q ss_pred hhhhhcccccchhHHHHHHHhhhccCCchhhhc---chHHHHHHHHHhh-hhccHHHHHHHHHHHHHHhh
Q 000797 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLL-DEQNLAVQKAISELIVVMAS 68 (1280)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~~k~~l-~d~~~kVr~al~~~I~ama~ 68 (1280)
+..||..+|.+.-.-||.+|-.++..++..+.. .+.++ ..++.++ ..+..+||+-++++|.+.+.
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl-~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM-DELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH-HHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998876542 34444 4454555 47788999999999998874
No 254
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=25.09 E-value=5e+02 Score=31.36 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=67.7
Q ss_pred chhhHHHHHHHHHHHHHhhCChhHHHHH-HHHhhhhc----cccccch--HHHHHHHHHhhhCC-----Cc---------
Q 000797 915 DKEKWINLIGDVAGCVSIKRPKEVQTIC-LILTKSIN----RQQRFQR--EAAAAALSEFVRYS-----GG--------- 973 (1280)
Q Consensus 915 ~~~~~~~gV~lLar~l~~~~~~~~~~il-~~l~~~L~----s~~~~~R--~~a~aflsEll~~~-----~~--------- 973 (1280)
+..+-..+-+.+.++++.+....+.+++ .++..+++ ++...+| =+|+-.++-+-... ++
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 4456666666788899988777665554 55666665 3443333 34444444433211 11
Q ss_pred hhhHHHHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCCChHHHHHHHHH
Q 000797 974 FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSC 1041 (1280)
Q Consensus 974 ~~~l~~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~ 1041 (1280)
.......+++-|. .-.+..|.+|.-|++=+..-...--+.....++|.++..|.+.+..|-..|..+
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 1112233455555 334678999999998776444331123456789999999987655555555543
No 255
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=25.02 E-value=5.3e+02 Score=32.97 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=56.6
Q ss_pred hhccccCcHHHHHHHHHHhhhhcCC---CChhhHHHHHHHHHHHHHhc------CChhHHHHHHHHHHHhcCcCCccchh
Q 000797 268 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 338 (1280)
Q Consensus 268 l~~i~d~~W~~~L~~el~~ql~~y~---~~~~eK~fL~k~lG~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 338 (1280)
-..++|.+|.++=.+.++=-+.+-. +...||+|+...+--.|+-| +||++|.+.+.-.+.+ | |
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ--Y--p---- 558 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ--Y--P---- 558 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc--c--h----
Confidence 3567888999887777776666554 34789999998776666544 7888887766555541 1 1
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHh
Q 000797 339 GLAKAMGLVAASHLDAVLEMLKGILD 364 (1280)
Q Consensus 339 G~A~~~G~~A~~Hld~VL~~L~~~~~ 364 (1280)
-+=.+--+-|.+|..||=+|..
T Consensus 559 ----RFLkahw~FLkTVv~KLFEFMh 580 (1053)
T COG5101 559 ----RFLKAHWSFLKTVVKKLFEFMH 580 (1053)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1222344567888888877764
No 256
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.76 E-value=1.8e+03 Score=29.46 Aligned_cols=73 Identities=11% Similarity=0.261 Sum_probs=38.5
Q ss_pred hHHHHHHHhhccCCC--hHHHHHHHHHHHHHhccCCcc------cchhhhH----HHHHHhccc-cccCChhhHHHHHHH
Q 000797 1017 TQVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKD------AVEPILL----NLSVRLRNL-QVSMNVKMRRNAFAA 1083 (1280)
Q Consensus 1017 ~~lL~all~~L~d~d--~~V~~ea~~~L~~ll~~l~~~------~~~~~l~----~l~~~lr~~-fede~~~vR~aAi~l 1083 (1280)
..+|..+...+-..+ -+|.-+++.++..++..=... ...+... .|..-+-.+ -+......|+|-+..
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 344555555555443 357788888888887531100 0001111 111111122 234567899999999
Q ss_pred HHHHhh
Q 000797 1084 FGALSN 1089 (1280)
Q Consensus 1084 fG~L~~ 1089 (1280)
|-....
T Consensus 394 f~s~l~ 399 (970)
T KOG0946|consen 394 FRSYLY 399 (970)
T ss_pred HHHHHh
Confidence 988763
No 257
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.60 E-value=2.2e+02 Score=34.26 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=53.2
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1023 ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1023 ll~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
++.-+...+..|..+|..+|..++.. -...+..-.-.+...+++.+-|++..||..++.++-.++-
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~ 128 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLIL 128 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHh
Confidence 44555666788999999999999976 3344555666788899999999999999999999988763
No 258
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=24.38 E-value=3.8e+02 Score=27.76 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHH
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQV 1019 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~l 1019 (1280)
+.+-..+...+.++++.|+++||+++..--...+.+|.+.+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L 56 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNL 56 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHH
Confidence 44667788889999999999999999887666677776553
No 259
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=3.1e+02 Score=36.61 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=63.7
Q ss_pred hhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhh
Q 000797 1057 ILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1136 (1280)
Q Consensus 1057 ~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L 1136 (1280)
+..+|..|...|+.+++-.+|..|...|..-..+ -.....-+.--||+++.+++-.+.++||-++..|..++..++..-
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~-La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPL-LATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHH-HhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 4456666677899999999999999998765432 123456677779999999999999999999999988888877654
Q ss_pred hh
Q 000797 1137 EI 1138 (1280)
Q Consensus 1137 ~w 1138 (1280)
|-
T Consensus 879 gD 880 (1014)
T KOG4524|consen 879 GD 880 (1014)
T ss_pred hh
Confidence 44
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=23.31 E-value=6.9e+02 Score=25.78 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=63.6
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHHhccCCChhhHHH
Q 000797 1162 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1241 (1280)
Q Consensus 1162 ~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~Ll~Dpdp~VR~~ 1241 (1280)
-++|-..- ..+.....-+...-..++++.+++.--|...+..++++.....-.++......+.|..++...+++.|+.+
T Consensus 26 leicD~In-~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~k 104 (142)
T cd03569 26 LEICDMIR-SKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQK 104 (142)
T ss_pred HHHHHHHh-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHH
Confidence 35666553 33455555666666688889999999999999999998776555556667777888884444789999998
Q ss_pred HHHHHHHHH
Q 000797 1242 CSSSLGWLL 1250 (1280)
Q Consensus 1242 Aa~aL~~l~ 1250 (1280)
+.+-+..-.
T Consensus 105 il~li~~W~ 113 (142)
T cd03569 105 ILELIQAWA 113 (142)
T ss_pred HHHHHHHHH
Confidence 877755444
No 261
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=22.74 E-value=1.8e+03 Score=29.30 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=100.7
Q ss_pred hHhHHHHHHHh--hccCCChHHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhH------------HHH
Q 000797 1015 YATQVLSVILA--LLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMR------------RNA 1080 (1280)
Q Consensus 1015 ~~~~lL~all~--~L~d~d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR------------~aA 1080 (1280)
+.|.+|.+.++ ||..+++.|+..|-.-..+.+..+. +.+.+|.-++..+|.+++...-+.+- .--
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk-kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyI 608 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK-KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYI 608 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCcCCCcCcccccccccccccee
Confidence 33445555543 4444567888888888888887765 34567888888888888732222222 112
Q ss_pred HHHHHHHhhccCCc----------chHHHHHHHHHhHHHHHHhccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhcccCC
Q 000797 1081 FAAFGALSNFGVGS----------QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCF 1149 (1280)
Q Consensus 1081 i~lfG~L~~~~~~~----------~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~~~ 1149 (1280)
|+..|-+.....-. .-.|+.++..-.+.-.-+--.++.|.+-..|-.++-.+|++-+- ..+-+-.+
T Consensus 609 fEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~--- 685 (980)
T KOG2021|consen 609 FETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTEN--- 685 (980)
T ss_pred eecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchh---
Confidence 33344443211111 11222233222333333333444566667888888887775333 21111111
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhHHHHHHHHHHHhhccCchhhhhhcCHHHHHHHHHHH
Q 000797 1150 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1229 (1280)
Q Consensus 1150 ~~~~~l~~~~f~~~~~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~~~~~L~~~ 1229 (1280)
+.+.... |.+-.+.++-....+-| .++||.+.-.|+|.++..+.++-+..+ =++++.
T Consensus 686 ----qvg~~~v-----------f~~~ldvil~~ls~f~k--~E~iRsavrft~hRmI~~lg~~vlPfi-----pklie~- 742 (980)
T KOG2021|consen 686 ----QVGNMVV-----------FSNILDVILVTLSFFNK--FENIRSAVRFTFHRMIPILGNKVLPFI-----PKLIEL- 742 (980)
T ss_pred ----cccHHHH-----------HHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHHhcchhhhcch-----HHHHHH-
Confidence 1111111 22222333333222222 467999888889999987776665322 234455
Q ss_pred hccCCChh
Q 000797 1230 LSQSADAI 1237 (1280)
Q Consensus 1230 Ll~Dpdp~ 1237 (1280)
|++|-|+-
T Consensus 743 lL~s~d~k 750 (980)
T KOG2021|consen 743 LLSSTDLK 750 (980)
T ss_pred HHhcCCHH
Confidence 67776664
No 262
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=22.57 E-value=1.6e+02 Score=23.08 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000797 1220 TQVFGLLVVKLSQSADAIVRATCSSSLGWL 1249 (1280)
Q Consensus 1220 e~~~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1249 (1280)
+.+...|...-..|+|+.||.-|..+|..|
T Consensus 4 ~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDLVREHAQDALEEL 33 (36)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 556666776556799999999999998765
No 263
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.55 E-value=5.1e+02 Score=30.87 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=67.8
Q ss_pred hCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHhhccCC-------ChHHHHHHHHHHHHHhccCCcccchhhhHHH
Q 000797 989 VSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDL-------DESVQLTAVSCLLTILKSSSKDAVEPILLNL 1061 (1280)
Q Consensus 989 l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~~L~d~-------d~~V~~ea~~~L~~ll~~l~~~~~~~~l~~l 1061 (1280)
+.+++...|..||..|..=+. + .+++|-++..+.+. +-......|..+..|+..-. -.+.+|+..+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~g--l----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~L 259 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDPG--L----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQL 259 (343)
T ss_pred HhCCCHHHHHHHHHHhccCCC--c----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHH
Confidence 344677788888876654332 1 22233333322221 34456667777788887632 3577888887
Q ss_pred HHHhcccc----------ccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHH
Q 000797 1062 SVRLRNLQ----------VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR 1109 (1280)
Q Consensus 1062 ~~~lr~~f----------ede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~Lvp 1109 (1280)
..-+..+. .++...+|..|..+.+.+++-- +.....+...|.+.+..
T Consensus 260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f-~~~y~~l~~ri~~tl~k 316 (343)
T cd08050 260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF-STSYNTLQPRITRTLLK 316 (343)
T ss_pred HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHH
Confidence 77765443 4566899999999999999721 22333455555554433
No 264
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=1.6e+03 Score=31.84 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=75.2
Q ss_pred HHHHHHHhhhCCCChhHHHHHHhhccCCcch-hhhhhHhHHHHHH----HhhccCCChHHHHHHHHHHHHHhccCCcccc
Q 000797 980 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVI----LALLDDLDESVQLTAVSCLLTILKSSSKDAV 1054 (1280)
Q Consensus 980 ~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~-~v~~~~~~lL~al----l~~L~d~d~~V~~ea~~~L~~ll~~l~~~~~ 1054 (1280)
.-+..+.+.+.--+++.|.-|++-|+++-.. +...+.. ++|+. -+..-|.+..|++.++.++++++..+. +.+
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~l 118 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KKL 118 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HHh
Confidence 3344455555566788999999999988654 3333333 34333 233444567899999999999998875 567
Q ss_pred hhhhHHHHHHhccccccCChhhHHHHHHHHHHHhh
Q 000797 1055 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1089 (1280)
Q Consensus 1055 ~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~ 1089 (1280)
++++..+..-.-=.+.|-...|-.+|...|-+...
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 88888887776666777778888888888877543
No 265
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=21.43 E-value=2.8e+02 Score=30.06 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHH
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVI 1023 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~al 1023 (1280)
..+++.|..... ++.||..|++-|.+.+.+++.-|.+|++.|+
T Consensus 77 ~~aL~LL~~~~~--~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaL 119 (184)
T smart00145 77 EDALELLSPKFP--DPFVRAYAVERLESASDEELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHhCccCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445666665555 6799999999999999988888988888887
No 266
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.22 E-value=4.6e+02 Score=30.86 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHHHHhc-CCCC----chhhHHHHHHHHHHHHHhhCChhHHHHHHHHhhhhcccccc-chHHHHHHHHHhhhCCCch-h
Q 000797 903 MRKILARD-GEQN----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRF-QREAAAAALSEFVRYSGGF-D 975 (1280)
Q Consensus 903 ~~~~l~~~-~~w~----~~~~~~~gV~lLar~l~~~~~~~~~~il~~l~~~L~s~~~~-~R~~a~aflsEll~~~~~~-~ 975 (1280)
..+.+..+ -.|. +...|.+.+-.+.. -...|+..+..++++.++. .=.+|.-=++.+++..|.. .
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~k--------dny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIK--------DNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhh--------hhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 34555544 3786 56666666654433 4668888888999988776 4445555666777765443 3
Q ss_pred hHHHH-HHHHHHhhhCCCChhHHHHHHhh
Q 000797 976 SLLEQ-MVEALCRHVSDESPTVRGLCLRG 1003 (1280)
Q Consensus 976 ~l~~~-~i~~L~~~l~D~~~~VR~laLrG 1003 (1280)
.+.++ .-..+.+.+++|++.||--||++
T Consensus 394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a 422 (432)
T COG5231 394 VLSKYGVKEIIMNLINHDDDDVKFEALQA 422 (432)
T ss_pred HHHHhhhHHHHHHHhcCCCchhhHHHHHH
Confidence 33333 33445555566666666655554
No 267
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=21.03 E-value=8.9e+02 Score=29.83 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhccCCcccchhhhHHHHHHhccccccCChhhHHHHHHHHHHHhhccCCcchHHHHHHHHHhHHHHHH
Q 000797 1033 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1112 (1280)
Q Consensus 1033 ~V~~ea~~~L~~ll~~l~~~~~~~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl 1112 (1280)
.|.++|...|..++-.-..+.+..+.......+. =+.+-.++-.+..+++|++-+... .....=-.-..+--.+.
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lA--K~~e~~e~aR~~~~il~~mFKHSe---et~~~Lvaa~~lD~vl~ 271 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRVARIGLGVILNLA--KEREPVELARSVAGILEHMFKHSE---ETCQRLVAAGGLDAVLY 271 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhh--hhcCcHHHHHHHHHHHHHHhhhhH---HHHHHHHhhcccchhee
Confidence 4666666666666543333333322222222222 234556777778888888776221 11111111133444566
Q ss_pred hccCCCHHHHHHHHHHHHhhchhhhh-hHHhhhccc
Q 000797 1113 HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH 1147 (1280)
Q Consensus 1113 HL~D~~~~V~~ack~tL~~~a~~L~w-~l~~l~~~~ 1147 (1280)
...-.+|++-.-|..||+.|+-.-+- .-+.+.++.
T Consensus 272 ~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr 307 (832)
T KOG3678|consen 272 WCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKR 307 (832)
T ss_pred ecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhh
Confidence 67777899999999999999866555 444455554
No 268
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.71 E-value=1.1e+02 Score=33.57 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHhhhCCCChhHHHHHHhhccCCcc---hhhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCC--cccchh
Q 000797 982 VEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS--KDAVEP 1056 (1280)
Q Consensus 982 i~~L~~~l~D~~~~VR~laLrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~--~~~~~~ 1056 (1280)
++.+..++.+-+.-.|-.|-+|...+.. +|+-...|+++..+-++|...|.+|+..++.+|..+.-..+ ...+.+
T Consensus 116 Lp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVP 195 (262)
T KOG3961|consen 116 LPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVP 195 (262)
T ss_pred HHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 3344444544444555555555554432 25555568888889999998899999999999999876543 334445
Q ss_pred hhHHHHH
Q 000797 1057 ILLNLSV 1063 (1280)
Q Consensus 1057 ~l~~l~~ 1063 (1280)
|.-+|..
T Consensus 196 fYRQlLp 202 (262)
T KOG3961|consen 196 FYRQLLP 202 (262)
T ss_pred HHHHhhh
Confidence 5544433
No 269
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.64 E-value=1.9e+02 Score=29.38 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=50.0
Q ss_pred hhhhhhcccccchhHHHHHHHhhhccCCchhhhc---chHHHHHHHHHhhhh-ccHH-HHHHHHHHHHHHhh
Q 000797 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWHS---KRPLLLEAVKSLLDE-QNLA-VQKAISELIVVMAS 68 (1280)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~~---k~~~i~~~~k~~l~d-~~~k-Vr~al~~~I~ama~ 68 (1280)
.|..||.++|...-.-||.+|-.++..+++.+.. .+.++ ..++.++.+ ++.. ||+.++++|...+.
T Consensus 41 ~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl-~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 41 LLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFL-NELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999998876542 34444 455556533 3334 99999999988775
No 270
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=20.46 E-value=6.2e+02 Score=31.84 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHhhhCCCChhHHHHHHhhccCCcch----hhhhhHhHHHHHHHhhccCCChHHHHHHHHHHHHHhccCCcc-cch
Q 000797 981 MVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD-AVE 1055 (1280)
Q Consensus 981 ~i~~L~~~l~D~~~~VR~laLrGLg~l~~~----~v~~~~~~lL~all~~L~d~d~~V~~ea~~~L~~ll~~l~~~-~~~ 1055 (1280)
+...|.+.|.||+..|...+.-.+-|.-.. ...-....++..+.+.+-.+|+..+..+..+|+.+.-.-+.. ...
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 566777888887776666555554444321 122234566777777777778878888899999887554332 233
Q ss_pred hhhHHHHHHhccccccCChhhHHHHHHHHHHHh
Q 000797 1056 PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1088 (1280)
Q Consensus 1056 ~~l~~l~~~lr~~fede~~~vR~aAi~lfG~L~ 1088 (1280)
++-..=+.++..|-.|+...|...-+.+|..+.
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 333333556678889999999999999998875
No 271
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=1.8e+03 Score=27.99 Aligned_cols=215 Identities=11% Similarity=0.065 Sum_probs=111.5
Q ss_pred HHHHHhcC-CcchHHHHHHhhHHHHHHHHHHHhhhcccCC-CCCCC----hHHHHHHHHHHHHHhhcchHHHHHHHh---
Q 000797 839 LTAFFRGG-GKVGKKAVEKSYAPVLAALTLQLGSCHGLAS-SGQHE----PLRAILTSFQAFCECVGDLEMRKILAR--- 909 (1280)
Q Consensus 839 L~Ell~~~-~~~~~~av~~~fp~Lf~aLL~ql~~~~~l~~-~~~~~----P~~~~l~Alk~ll~~~~~~~~~~~l~~--- 909 (1280)
+.|++... .+++...-+.+|=+|..++..+++|--+... +.+-+ =-....+.+|-.-.-.|..+..+.+-.
T Consensus 318 lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~ 397 (559)
T KOG2081|consen 318 LSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLK 397 (559)
T ss_pred hHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHc
Confidence 44555554 1122333356677777777777766442211 11111 012455666665555666666654332
Q ss_pred --cCCCCchhhHHHHHHHHHHHHHhhCCh----hHHHHHHHHhhhhccccccchHHHHHHHHHhhhCCCchhhHHHHHHH
Q 000797 910 --DGEQNDKEKWINLIGDVAGCVSIKRPK----EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVE 983 (1280)
Q Consensus 910 --~~~w~~~~~~~~gV~lLar~l~~~~~~----~~~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~~i~ 983 (1280)
+..|+..| +.--..++++++-++ .++.|++.+... ....+-|-|++..++++-.=-.....+++.+..
T Consensus 398 e~~~~We~~E----AaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~ 471 (559)
T KOG2081|consen 398 ENNASWEEVE----AALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVEQHPELLEPVLR 471 (559)
T ss_pred cCCCchHHHH----HHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 24675333 222355666666554 677777666555 233346778887777753311112345566667
Q ss_pred HHHhhhCCCChhHHHHHHhhccCCcch---hhhhhHhHHHHHHHhhccCC--ChHHHHHHHHHHHHHhccCCcccchhhh
Q 000797 984 ALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL--DESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 984 ~L~~~l~D~~~~VR~laLrGLg~l~~~---~v~~~~~~lL~all~~L~d~--d~~V~~ea~~~L~~ll~~l~~~~~~~~l 1058 (1280)
.+.+++.+.. .-.++.....++... ++..+.+.++. ++..|+.. +++.+. -+++++.++..+.+..+...+
T Consensus 472 ~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~-l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 472 YIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLE-LIRSLDSTQINEEAAC-LLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhccHHHHH-HHHHHHHHHhcCCHhhhhHHH
Confidence 7777776655 222222222233221 33333333222 22222221 345555 889999999999988887766
Q ss_pred HHHHH
Q 000797 1059 LNLSV 1063 (1280)
Q Consensus 1059 ~~l~~ 1063 (1280)
-+++.
T Consensus 548 ~el~~ 552 (559)
T KOG2081|consen 548 EELCE 552 (559)
T ss_pred HHHhh
Confidence 66654
No 272
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.16 E-value=2.7e+02 Score=29.70 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhCCCChhHHHHHHhhccCCcchhhhhhHhHHHHHHHh
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILA 1025 (1280)
Q Consensus 979 ~~~i~~L~~~l~D~~~~VR~laLrGLg~l~~~~v~~~~~~lL~all~ 1025 (1280)
+.++..|.... +++.||..|++-|.++..+++..|-+|++.|+--
T Consensus 79 ~~aLeLL~~~f--~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKy 123 (166)
T cd00870 79 EDALELLSPYF--TNPVVRKYAVSRLKLASDEELLLYLLQLVQALKY 123 (166)
T ss_pred HHHHHHcCccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 44566666555 4589999999999999988898888888777643
Done!