Query 000797
Match_columns 1280
No_of_seqs 254 out of 435
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:01:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000797.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_567-571//hhsearch_pdb/000797hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 151.9 47.7 175 955-1133 601-783 (852)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 142.6 69.2 1022 3-1257 11-1100(1230)
3 2bpt_A Importin beta-1 subunit 1.0 1 1 133.4 45.8 241 978-1251 595-857 (861)
4 4fdd_A Transportin-1; heat rep 1.0 1 1 128.6 26.2 142 991-1135 597-743 (852)
5 1b3u_A Protein (protein phosph 1.0 1 1 127.7 23.8 262 939-1250 323-586 (588)
6 1b3u_A Protein (protein phosph 1.0 1 1 125.2 44.1 266 939-1253 280-550 (588)
7 2vgl_B AP-2 complex subunit be 1.0 1 1 121.9 21.4 140 979-1133 352-492 (591)
8 1qgr_A Protein (importin beta 1.0 1 1 118.8 27.3 248 979-1254 605-874 (876)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 117.7 55.4 215 922-1136 621-859 (861)
10 1qgr_A Protein (importin beta 1.0 1 1 117.0 49.6 235 937-1207 603-871 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=151.85 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHCCCC-HHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCC
Q ss_conf 4048999999985208873-22179--99999997520799856999997311578613---566558678999995203
Q 000797 955 FQREAAAAALSEFVRYSGG-FDSLL--EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLD 1028 (1280)
Q Consensus 955 ~~R~~a~aflsEll~~~~~-~~~l~--~~ii~~L~~~l~D~~~~VR~laLrGLg~la~~---~v~~~~~~lL~all~~L~ 1028 (1280)
.-|.+++-.++.+...... ....+ ..+++.+...++|+++.||..+...+|.++.. +...|.+.++|.+++.++
T Consensus 601 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~ 680 (852)
T 4fdd_A 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN 680 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 19999999997899987476998836771899999983899844999999999999998168889879999999998769
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 78858999999999998613993540341697798731314569--9465999999999975004886058799999975
Q 000797 1029 DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1106 (1280)
Q Consensus 1029 d~~~~V~~ea~~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de--~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~ 1106 (1280)
+.+..+...|+.+++.+...++. .+.+|...+...+.+.+++. +..++..|+.++|.++..+ .....|+..|+...
T Consensus 681 ~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~-~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 681 PEFISVCNNATWAIGEISIQMGI-EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVAPMLQQFIRP 758 (852)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC-HHHHGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-HHHHCCCHHHHHHH
T ss_conf 42068999999999999997117-67878999999999985799887207788999999999868-89767558999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 889998405899879999999999521
Q 000797 1107 LPRLILHIYDDDLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1107 LvpLLlhL~D~~~~V~~ack~tL~~~a 1133 (1280)
+..-|-+..| .+.+..+..+|+.+.
T Consensus 759 ~~~~l~~~~d--~~e~~~a~~~l~~li 783 (852)
T 4fdd_A 759 WCTSLRNIRD--NEEKDSAFRGICTMI 783 (852)
T ss_dssp HHHHHHTSCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC--CHHHHHHHHHHHHHH
T ss_conf 9998653666--079999999999999
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=142.61 Aligned_cols=1022 Identities=15% Similarity=0.105 Sum_probs=480.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHH-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 22030354421047799997664069903320-32588999998763100489999999999998511520167676302
Q 000797 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1280)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~ilrhlins~~~~~~-~k~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i 81 (1280)
++.++.+.+...|..++.-|...++.....+. .....++..+-..+.|++.+||.+-+..+..++.+.. ...+
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------~~~~ 84 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------EYQV 84 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------HHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------HHHH
T ss_conf 9975589878599999999999974166578756799999999998669998999999999999997587------9899
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHCCCC----CCCCC
Q ss_conf 14420232368522123554345678890579998886677761240023------361489876210673----67420
Q 000797 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM------QHILWPLLLKMIIPR----AYTSA 151 (1280)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~~~L~lltttv~~m------~~~LWP~LL~~i~p~----~yt~a 151 (1280)
++++..+.-. . . + ....+|..+.++|..+....+.. ..-.||.++.++... +-...
T Consensus 85 ~~i~~~Ll~~---l---~----d----~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 85 ETIVDTLCTN---M---L----S----DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HHHHHHHHHH---T---T----C----SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHHH---H---C----C----CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999998---6---6----9----83889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 23488999999974125898654444577899987999999999825964540459999998986099999302444786
Q 000797 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQD 231 (1280)
Q Consensus 152 l~~i~k~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~llaRllvl~~~P~~~~~rg~~~L~lL~~l~~~i~~~l~~~W~~ 231 (1280)
-...+.++..++... +... .|.-..++..++-.+.+|... --..++..+..+........ .+.
T Consensus 151 ~~~al~~l~~~~~~~---~~~l---------~~~~~~ll~~l~~~L~~~~~~--vR~~a~~al~~l~~~~~~~~---~~~ 213 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQ---GGLL---------VNFHPSILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNIV---FVD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHT---CSSC---------TTTHHHHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CTT
T ss_pred HHHHHHHHHHHHHHH---HHHH---------HHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHHH---HHH
T ss_conf 999999999999982---7677---------887999999999987599689--99999999999998568999---999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 28888610035777778951474299999999998230115670899999999853300799936677999999999871
Q 000797 232 EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQK 311 (1280)
Q Consensus 232 ~Ip~Ll~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d~~W~~~L~~~l~~ql~~y~~~~~eK~fL~k~lG~~L~~ 311 (1280)
.+|.|+++|....+ ......--+.+-.+....=+.+. .+...+...+.+.+. .+++.-+..-+.++|.....
T Consensus 214 ~l~~l~~~L~~~~~----~~~r~~a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 214 LIEHLLSELSKNDS----MSTTRTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHTCS----SCSCTTHHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998616775----56899999999999998689899--889999999999866--89778999999999999997
Q ss_pred CCCH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHCCCCCHHHHHHCCCCCCCCCHH
Q ss_conf 2794--58999999998831868862104599999999620689999999998-85101221000211014654432247
Q 000797 312 VADR--NYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGI-LDNIGQSLFQRLLSFFSNSYRMEESD 388 (1280)
Q Consensus 312 ~~~~--~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~VL~~L~~~-~~~~~~~~~~~~l~~~k~~~~~~e~~ 388 (1280)
+... .++..-+..++....+.... . ..-. +...+..++. .... ..... ..+.+. +....
T Consensus 286 ~~~~~~~~l~~li~~ll~~l~~d~~~-----~--~~~d-----~~~~~~~~~~~~~~~-~~~~~---~~~~~~--~d~~~ 347 (1230)
T 1u6g_C 286 CPKEVYPHVSTIINICLKYLTYDPNY-----N--YDDE-----DEDENAMDADGGDDD-DQGSD---DEYSDD--DDMSW 347 (1230)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCCC------------------------------------------------------CTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC-----C--CCCC-----CCCCCCCCCCCCCCC-HHHCC---CCCCCC--CCCCH
T ss_conf 84877776899999999982789988-----8--7644-----110112233446530-11001---366645--55677
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC-----
Q ss_conf 699999998999994099145899997877777898762126646899999999999999774221-59977887-----
Q 000797 389 DIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAE-NGASFPLK----- 462 (1280)
Q Consensus 389 ~~ks~l~l~YG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~-~~~~f~f~----- 462 (1280)
.+|.+.+.+.+.++...| +.+.+.++.. +..+..++ ...+..++.+.++++..+.+++..... ......++
T Consensus 348 ~vR~~A~~~l~~l~~~~~-~~~~~~~~~l-~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRH-EMLPEFYKTV-SPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCC-TTHHHHHTTT-HHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred HHHHHHHHHHHHHHHHCH-HHHHHHHHHH-HHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 999999999999997466-6799999999-89999871-79865799999999999999724243434675201356455
Q ss_pred ------CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ------77999999999834688977678324456699999987210134577779368989987735232368999221
Q 000797 463 ------KRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDV 536 (1280)
Q Consensus 463 ------~k~eLl~~l~~~i~~ep~~~l~s~~~~l~~~r~~al~a~~~L~~l~P~L~~e~~~~ll~~~~~~~~lp~~~~~l 536 (1280)
.-++++..+...++.+. + ++|+.++.++..+++.-|..-......++..++..+.-+......
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~------~-----~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKS------V-----KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSC------H-----HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC------H-----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999874699999999861377------8-----799999999999999761105777999999999997487885168
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 79999999999999960158887563999999999777875193588665699999999999884220134457888876
Q 000797 537 VNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSC 616 (1280)
Q Consensus 537 ~~~~~~al~~lL~~ll~~~~~d~~~~~~~L~~~l~~l~pwl~S~~~~eR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~ 616 (1280)
...+..++. .++...+. ......+..+++.+..++......-|..|+.++..+.+.+...
T Consensus 494 ~~~a~~~l~----~~~~~~~~--~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~-------------- 553 (1230)
T 1u6g_C 494 KIDALSCLY----VILCNHSP--QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL-------------- 553 (1230)
T ss_dssp HHHHHHHHH----HHHHSSCG--GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS--------------
T ss_pred HHHHHHHHH----HHHHHCCH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC--------------
T ss_conf 999999999----99983898--8788679999999999971424689999999999999871675--------------
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 512445442103577899765677211223466889842475--689936999999999999998820988889998873
Q 000797 617 THIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRC--ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGID 694 (1280)
Q Consensus 617 ~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg~l~prC--~D~~~~ir~~A~~~i~~Ll~I~~~~~~~~~~~~~~d 694 (1280)
....+..| .+-+..++..+...+ .|+++++|..|+.|+..+..-. |......
T Consensus 554 -------------~~~~~~~~------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~-------g~~~~~~ 607 (1230)
T 1u6g_C 554 -------------DQPSSFDA------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL-------GDNLGSD 607 (1230)
T ss_dssp -------------SSCCCCCC------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT-------GGGCCTH
T ss_pred -------------CCCCCCCH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-------CCHHHHH
T ss_conf -------------55653232------789999999999987326998899999999999999982-------7032443
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 234454212238999984127999915-6899999998401895664203222227899999996200326999999972
Q 000797 695 LELSYGALSSLEDVIAILRSDASIDPS-EVFNRIVSSVCILLTKDEISCLAENTNSKIVFNEVLATAGKDIVTKDISRLR 773 (1280)
Q Consensus 695 ~~~~~~~l~~l~~~i~~~~~~~~~d~~-~~~~~i~~~l~~~L~~~el~sL~~~~~A~~vL~~~l~~~g~e~V~~il~~i~ 773 (1280)
.. .-+..+.+ .+ ...... .....+ ..+.......++. .++ .+.++.+...+.
T Consensus 608 ~~---~~l~~L~~---~l---~~e~~r~~~~~al-~~i~~~~~~~~~~---------~~~--------~~i~~~L~~~l~ 660 (1230)
T 1u6g_C 608 LP---NTLQIFLE---RL---KNEITRLTTVKAL-TLIAGSPLKIDLR---------PVL--------GEGVPILASFLR 660 (1230)
T ss_dssp HH---HHHHHHHH---HT---TSSSHHHHHHHHH-HHHTTCSSCCCCH---------HHH--------HHHHHHHHHHTT
T ss_pred HH---HHHHHHHH---HH---CCCHHHHHHHHHH-HHHHHCCCCCCHH---------HHH--------HHHHHHHHHHHH
T ss_conf 88---99999998---84---4530599999999-9998185644368---------889--------999999999998
Q ss_pred CCC-----CHHHHHHHHHH-CH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHC
Q ss_conf 556-----29999999620-70-00899999999997159987777667887898988764513-799999999999814
Q 000797 774 GGW-----PMQDAFHAFSQ-HA-VLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDD-ILQAAILALTAFFRG 845 (1280)
Q Consensus 774 ~~l-----~~~~ai~~La~-h~-~l~~~~l~~ll~~L~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~laA~~aL~Ell~~ 845 (1280)
..- ....++..+.. .+ .+. .+++...|...++..++ .|. ....+..+|..+...
T Consensus 661 ~~~~~~r~~a~~al~~l~~~~~~~~~---~~~v~~~l~~ll~ll~~---------------~D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 661 KNQRALKLGTLSALDILIKNYSDSLT---AAMIDAVLDELPPLISE---------------SDMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCTTCC---HHHHHHHHTTCGGGSCT---------------TCHHHHHHHHHHHHHHTTS
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHHHHHH
T ss_conf 67888999999999999960433389---89999999998763575---------------4187899999999999884
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHHHHHHHHC-CHHHHHHHHH-CCCCCC-HH--H
Q ss_conf 87211788997518899999998732024698999881--7999999999999616-4689999974-299886-12--1
Q 000797 846 GGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECVG-DLEMRKILAR-DGEQND-KE--K 918 (1280)
Q Consensus 846 ~~~~~~~av~~~fp~Ll~aLL~ql~~~~~l~~~~~~~P--~~~~l~Alk~ll~~~~-~~~~~~~le~-~~~w~~-~~--~ 918 (1280)
.+ ..+...++.++-.++..+.... ... ....+..++.+..... .......++. ...|.. .. .
T Consensus 723 ~~----~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 791 (1230)
T 1u6g_C 723 YP----SSLSKISGSILNELIGLVRSPL-------LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALT 791 (1230)
T ss_dssp CG----GGGGGTTTTTHHHHHHHHTCTT-------CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----C
T ss_pred CC----HHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 91----2677767768999999975862-------105789999999999983478878899999998500357887320
Q ss_pred HHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89889999999---97218811899999985521266--64404899999998520887322179999999975207998
Q 000797 919 WINLIGDVAGC---VSIKRPKEVQTICLILTKSINRQ--QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 993 (1280)
Q Consensus 919 ~~~gV~lLar~---l~~~~~~~i~~il~~l~~~L~s~--~~~~R~~a~aflsEll~~~~~~~~l~~~ii~~L~~~l~D~~ 993 (1280)
+.+....++++ ++...++....++..+...++++ .+..+..+..+++|+....... .. ..+...+...+.|++
T Consensus 792 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~-~~-~~l~~~~~~~l~~~~ 869 (1230)
T 1u6g_C 792 HKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLS-GQ-LELKSVILEAFSSPS 869 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCC-SC-THHHHHHHHGGGCSC
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC-CC-CCHHHHHHHHHCCCC
T ss_conf 0010489999999999846566689999999983788766799999999999861567876-56-418999999847997
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 56999997311578613566558678999995203788589999999999986139935403416977987313145699
Q 000797 994 PTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN 1073 (1280)
Q Consensus 994 ~~VR~laLrGLg~la~~~v~~~~~~lL~all~~L~d~~~~V~~ea~~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~ 1073 (1280)
+.||..|..+||.++.+.. +..+|.++.++.+. ...+..++.+|+.++...+...+.++...|...+....++++
T Consensus 870 ~~Vr~aAa~aLg~l~~~~~----~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~ 944 (1230)
T 1u6g_C 870 EEVKSAASYALGSISVGNL----PEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAE 944 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7899999999687752699----98899999987266-032498899999998238766677669999999998733830
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
Q ss_conf 465999999999975004886058799999975889998-4058998799999999995210144557753114677778
Q 000797 1074 VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSD 1152 (1280)
Q Consensus 1074 ~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-hL~D~~~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~ 1152 (1280)
+.+|..+...+|.+..... ..+.|.+. ++.|+++.+|..|-.+++.+....
T Consensus 945 ~~~r~~~a~~lg~l~~~~~------------~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~---------------- 996 (1230)
T 1u6g_C 945 EGTRNVVAECLGKLTLIDP------------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDH---------------- 996 (1230)
T ss_dssp TTHHHHHHHHHHHHHHSSG------------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSS----------------
T ss_pred HHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC----------------
T ss_conf 4468999988756650676------------888899999856997889999999999997068----------------
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 88986999999999999949421999999988652199935779999999874002923554102799999999998622
Q 000797 1153 HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1232 (1280)
Q Consensus 1153 ~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1232 (1280)
.-.++.. +..++...+..++++...||++|+.-+|.+.++.++-... ....+...|.. ..+
T Consensus 997 -~~~~~~~---------------l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~--~l~~~lp~l~~-~~~ 1057 (1230)
T 1u6g_C 997 -PQPIDPL---------------LKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD--LLDTVLPHLYN-ETK 1057 (1230)
T ss_dssp -CCTHHHH---------------HHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHH-TTS
T ss_pred -CHHHHHH---------------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHH-HHC
T ss_conf -2335898---------------9998999998648985879999999999998428576897--79889899998-830
Q ss_pred CCC------------------HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 998------------------0268999999999999800035
Q 000797 1233 SAD------------------AIVRATCSSSLGWLLKSINSHS 1257 (1280)
Q Consensus 1233 Dpd------------------p~VR~~Aa~aL~~l~~~~~~~~ 1257 (1280)
.++ -.||..|-++++.+.+++....
T Consensus 1058 ~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i 1100 (1230)
T 1u6g_C 1058 VRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100 (1230)
T ss_dssp CCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred CCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2687601330589602367748999999999999999888747
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=133.44 Aligned_cols=241 Identities=13% Similarity=0.118 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHCCCCH-HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999752079985-6999997311578613---5665586789999952037885899999999999861399354
Q 000797 978 LEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1053 (1280)
Q Consensus 978 ~~~ii~~L~~~l~D~~~-~VR~laLrGLg~la~~---~v~~~~~~lL~all~~L~d~~~~V~~ea~~~L~~il~~l~~~~ 1053 (1280)
.+.+++.+...+++.++ .||.-++..+++++.. +...|.+.+++.++..+.+.+..++..++.+++.+....+ ..
T Consensus 595 ~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~ 673 (861)
T 2bpt_A 595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-ED 673 (861)
T ss_dssp HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GG
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC-HH
T ss_conf 99999999999746788757999999999999997660999999999999988655667899999999999998745-40
Q ss_pred CHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC---CCC-----HHHHH
Q ss_conf 03416977987313145699--465999999999975004886058799999975889998405---899-----87999
Q 000797 1054 VEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY---DDD-----LSVRQ 1123 (1280)
Q Consensus 1054 ~~~~~~~i~~~lr~lf~de~--~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlhL~---D~~-----~~V~~ 1123 (1280)
+.++...+...+...+++++ .++|.+++.++|+++... |....+|.++++..+...+-+-. |++ ..|+.
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~ 752 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI-GADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLE 752 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 3111999999999972786556766599999999999984-050899999999999999736789997588999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---C-CHHHHHHHH
Q ss_conf 999999952101445577531146777788898699999999999994942199999998865219---9-935779999
Q 000797 1124 ACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEA---P-WPIIQANAI 1199 (1280)
Q Consensus 1124 ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~ylkS---~-~~~IR~aAa 1199 (1280)
++-.++..++.-++-. ...|. .++..+...+.. .+.+ + ...+|.+|+
T Consensus 753 ~~l~~~~~i~~~l~~~-~~~~~-------------~~~~~i~~~l~~---------------~~~d~~~~~~~~vr~~a~ 803 (861)
T 2bpt_A 753 AVLDAYVGIVAGLHDK-PEALF-------------PYVGTIFQFIAQ---------------VAEDPQLYSEDATSRAAV 803 (861)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHG-------------GGHHHHHHHHHH---------------HHHCHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHH-------------HHHHHHHHHHHH---------------HHCCCCCCCCHHHHHHHH
T ss_conf 9999999999998267-78899-------------999999999999---------------874855578699999999
Q ss_pred HHHHHHHCCC-CHHHHHHCCHH-HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 9998740029-23554102799-99999999862--29980268999999999999
Q 000797 1200 YFSSSILCLC-DDQHILSLFYT-QVFGLLVVKLS--QSADAIVRATCSSSLGWLLK 1251 (1280)
Q Consensus 1200 ~fiG~l~~~~-~~~~~~~~~~e-~l~~~L~~~Ll--~Dpdp~VR~~Aa~aL~~l~~ 1251 (1280)
..+|.+...+ ..+... ... .++..|...+. ++.+..|+..|+.|++.+.+
T Consensus 804 ~~l~~l~~~~~g~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 804 GLIGDIAAMFPDGSIKQ--FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHCTTSTTGG--GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHH--HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998828824889--8726799999998853557887789999999999998
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=128.58 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHCCCCCCH---HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99856999997311578613---566558--6789999952037885899999999999861399354034169779873
Q 000797 991 DESPTVRGLCLRGLVQIPSI---HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1065 (1280)
Q Consensus 991 D~~~~VR~laLrGLg~la~~---~v~~~~--~~lL~all~~L~d~~~~V~~ea~~~L~~il~~l~~~~~~~~~~~i~~~l 1065 (1280)
.++..+|..+++.+|.++.. +...|. +.+++.++..+.|.+..|+..+...++.+....+ ..+.+++..+...+
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPIL 675 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 87611999999999789998747699883677189999998389984499999999999999816-88898799999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 1314569946599999999997500488605879999997588999840589987999999999952101
Q 000797 1066 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1135 (1280)
Q Consensus 1066 r~lf~de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlhL~D~~~~V~~ack~tL~~~a~~ 1135 (1280)
...++++..++|..|+.++|+++... |....+|.+.++..|++++-+ .+....|+..+..|+++++..
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~-~~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQM-GIEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHH-GGGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 98769420689999999999999971-176787899999999998579-988720778899999999986
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=127.69 Aligned_cols=262 Identities=17% Similarity=0.167 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH-HHHHHHH
Q ss_conf 999999855212666440489999999852088732217999999997520799856999997311578613-5665586
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYAT 1017 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~~~l~~~ii~~L~~~l~D~~~~VR~laLrGLg~la~~-~v~~~~~ 1017 (1280)
+.++..+...+++++..-|.+++..++++...... ....+.+++.+...++|+++.||..++.+|+.+... ....+.+
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 401 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ 401 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999986199889999999999999888627-67888899999998379836899999998999997549898988
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 78999995203788589999999999986139935403416977987313145699465999999999975004886058
Q 000797 1018 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1097 (1280)
Q Consensus 1018 ~lL~all~~L~d~~~~V~~ea~~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~~~vR~aAi~lfG~L~~~~~~~~~~ 1097 (1280)
.++|.+...+.|.+..++..++.+++.+...++..... ..+...+..++.|.+..||.+|+..+|.++... |. .
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~--~ 475 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD---EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF-GK--E 475 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC---HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-CH--H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CC--H
T ss_conf 88999999835998139999999999999880989899---999999998825981999999999999999996-84--4
Q ss_pred HHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 799999975889998-4058998799999999995210144557753114677778889869999999999999494219
Q 000797 1098 AFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRI 1176 (1280)
Q Consensus 1098 ~~~eqv~~~LvpLLl-hL~D~~~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~ 1176 (1280)
.+ ...+.|.+. .+.|++..||.++-.+++.++..++- +.| .
T Consensus 476 ~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-------------------~~~---------------~ 517 (588)
T 1b3u_A 476 WA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-------------------DIT---------------T 517 (588)
T ss_dssp HH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-------------------HHH---------------H
T ss_pred HH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH-------------------HHH---------------H
T ss_conf 57----888999999983189879999999999999976698-------------------999---------------9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999988652199935779999999874002923554102799999999998622998026899999999999
Q 000797 1177 DSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1250 (1280)
Q Consensus 1177 ~~~l~~~l~ylkS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1250 (1280)
..++...+..++++.+.+|.+|+..+|.+...+..+.. .+.+...|.. +..|+|+.||..|.+|++.+.
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEK-LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998667899862799999999999998653645----9999999998-747996669999999999763
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=125.16 Aligned_cols=266 Identities=15% Similarity=0.141 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCH-H--HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH-HHHH
Q ss_conf 999999855212666440489999999852088732-2--17999999997520799856999997311578613-5665
Q 000797 939 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-D--SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQ 1014 (1280)
Q Consensus 939 ~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~~-~--~l~~~ii~~L~~~l~D~~~~VR~laLrGLg~la~~-~v~~ 1014 (1280)
..++..+...++.++..-|.+|...++++....... . ...+.+++.+...++|+++.||..++..|+.++.. ....
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 359 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999999985899589999999879999997274443657999999999998619988999999999999988862767
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 58678999995203788589999999999986139935403416977987313145699465999999999975004886
Q 000797 1015 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1094 (1280)
Q Consensus 1015 ~~~~lL~all~~L~d~~~~V~~ea~~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~~~vR~aAi~lfG~L~~~~~~~ 1094 (1280)
..+.++|.+...+.|.+++|+..++.+|+.+....+... +...+...+..+++|.+..+|.+++.++|.++...+..
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 888899999998379836899999998999997549898---98888999999835998139999999999999880989
Q ss_pred CHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 058799999975889998-4058998799999999995210144557753114677778889869999999999999494
Q 000797 1095 QREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP 1173 (1280)
Q Consensus 1095 ~~~~~~eqv~~~LvpLLl-hL~D~~~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~ 1173 (1280)
.+.+ .+.|.++ .++|++..||.++-.+++.++..++.. .+...
T Consensus 437 ---~~~~----~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-------------------~~~~~---------- 480 (588)
T 1b3u_A 437 ---FFDE----KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-------------------WAHAT---------- 480 (588)
T ss_dssp ---GCCH----HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------------------HHHHH----------
T ss_pred ---HHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH-------------------HHHHH----------
T ss_conf ---8999----99999998825981999999999999999996844-------------------57888----------
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 21999999988652199935779999999874002923554102799999999998622998026899999999999980
Q 000797 1174 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1253 (1280)
Q Consensus 1174 ~~~~~~l~~~l~ylkS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~~~~ 1253 (1280)
++.......+++...+|.+|+..+|.+...+..+. ..+.+...|.. +++|+++.||..|+.+++.+.+..
T Consensus 481 -----llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 481 -----IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp -----THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred -----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -----99999998318987999999999999997669899----99999999986-678998627999999999999986
No 7
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=121.93 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999997520799856999997311578613566558678999995203788589999999999986139935403416
Q 000797 979 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1058 (1280)
Q Consensus 979 ~~ii~~L~~~l~D~~~~VR~laLrGLg~la~~~v~~~~~~lL~all~~L~d~~~~V~~ea~~~L~~il~~l~~~~~~~~~ 1058 (1280)
+.++..|.+.+.|.+..+|..+++.+|+++.. .......+++.+++.+.+.++.|+.++..++..++..-.... .
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~-~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~-~--- 426 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIK-VEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY-E--- 426 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC-C---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH-H---
T ss_conf 99999999998657999999999999999985-746799999999999835516899999999999999792057-8---
Q ss_pred HHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 977987313145-699465999999999975004886058799999975889998405899879999999999521
Q 000797 1059 LNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1133 (1280)
Q Consensus 1059 ~~i~~~lr~lf~-de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlhL~D~~~~V~~ack~tL~~~a 1133 (1280)
.+..++..+++ .+.+.+|.+++-++|..+..... + ...+..++-++.++++.|+.++-.++.+++
T Consensus 427 -~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~----~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~ 492 (591)
T 2vgl_B 427 -SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN----A-----DELLESFLEGFHDESTQVQLTLLTAIVKLF 492 (591)
T ss_dssp -TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT----H-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC----H-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf -99999998887423789999999999703121367----8-----999999998664598889999999999999
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=118.77 Aligned_cols=248 Identities=12% Similarity=0.082 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHCCCC--HHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999975207998--56999997311578613---56655867899999520378-8589999999999986139935
Q 000797 979 EQMVEALCRHVSDES--PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKD 1052 (1280)
Q Consensus 979 ~~ii~~L~~~l~D~~--~~VR~laLrGLg~la~~---~v~~~~~~lL~all~~L~d~-~~~V~~ea~~~L~~il~~l~~~ 1052 (1280)
..+++.+.+.+++++ +.||.-+++.+++++.. +...|.+.+++.++..+.+. +..|+..|+.+++.+....+ .
T Consensus 605 ~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~ 683 (876)
T 1qgr_A 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-S 683 (876)
T ss_dssp HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-G
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999999998536888850899999999999987609999999999999987586508799999999999999887-8
Q ss_pred CCHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC----C-------H
Q ss_conf 4034169779873131456--9946599999999997500488605879999997588999840589----9-------8
Q 000797 1053 AVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD----D-------L 1119 (1280)
Q Consensus 1053 ~~~~~~~~i~~~lr~lf~d--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlhL~D~----~-------~ 1119 (1280)
.+.++...+...+...+.+ .+.++|..++.++|.++... |....++..+++..+.. .+++. + .
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~~l~~~~~~l~~---~~~~~~~~~d~~~~~~~~ 759 (876)
T 1qgr_A 684 NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI-GGEFKKYLEVVLNTLQQ---ASQAQVDKSDYDMVDYLN 759 (876)
T ss_dssp GGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHH---HHTCCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHH
T ss_conf 54645999999999974871233876399999999999970-35279999999999999---985558999758899999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHH
Q ss_conf 79999999999521014455775311467777888986999999999999949421999999988652199--9357799
Q 000797 1120 SVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP--WPIIQAN 1197 (1280)
Q Consensus 1120 ~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~ylkS~--~~~IR~a 1197 (1280)
.++.++..++..+..-++......+.+. + .+ ..++..+.. ++ ....+++ +..+|.+
T Consensus 760 ~~r~~~~~~~~~i~~~~~~~~~~~~~~~----~-~~--~~~~~~i~~------------~l---~~~~~~~~~~~~vr~~ 817 (876)
T 1qgr_A 760 ELRESCLEAYTGIVQGLKGDQENVHPDV----M-LV--QPRVEFILS------------FI---DHIAGDEDHTDGVVAC 817 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSSCCGGG----G-GS--GGGHHHHHH------------HH---HHHHTCSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHH----H-HH--HHHHHHHHH------------HH---HHHHCCCCCCHHHHHH
T ss_conf 9999999999999999745755555438----8-99--999999999------------99---9986588888899999
Q ss_pred HHHHHHHHHCCCCH-HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999874002923-5541027999999999986229980268999999999999800
Q 000797 1198 AIYFSSSILCLCDD-QHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1254 (1280)
Q Consensus 1198 Aa~fiG~l~~~~~~-~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~~~~~ 1254 (1280)
|+..+|.+....+. +...... +.++..|....++|+++.||..|+.|+|.+.+.-.
T Consensus 818 a~~~l~~l~~~~~~~~~~~~~~-~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 818 AAGLIGDLCTAFGKDVLKLVEA-RPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHT-SHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHH-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998828488999970-48999999987546887689999999999997534
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=117.72 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCC--HHHHH
Q ss_conf 8999999997218811899999985521266644048999999985208873-22179999999975207998--56999
Q 000797 922 LIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES--PTVRG 998 (1280)
Q Consensus 922 gV~lLar~l~~~~~~~i~~il~~l~~~L~s~~~~~R~~a~aflsEll~~~~~-~~~l~~~ii~~L~~~l~D~~--~~VR~ 998 (1280)
.+..++.++.....+.++.++..+...+++.+..-|..++..++.+...... .......+++.+.+.+.|++ +.+|.
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~ 700 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKP 700 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999766099999999999998865566789999999999999874540311199999999997278655676659
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHH
Q ss_conf 997311578613---566558678999995203788-----------58999999999998613993--54034169779
Q 000797 999 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD-----------ESVQLTAVSCLLTILKSSSK--DAVEPILLNLS 1062 (1280)
Q Consensus 999 laLrGLg~la~~---~v~~~~~~lL~all~~L~d~~-----------~~V~~ea~~~L~~il~~l~~--~~~~~~~~~i~ 1062 (1280)
.++.++|.++.. ....|.+.+++.++..+.... ..++..++.++..++..++. ..+.++...+.
T Consensus 701 ~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~ 780 (861)
T 2bpt_A 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIF 780 (861)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999840508999999999999997367899975889999999999999999999998267788999999999
Q ss_pred HHHCCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 8731314569----94659999999999750048860587999-99975889998405899879999999999521014
Q 000797 1063 VRLRNLQVSM----NVKMRRNAFAAFGALSNFGVGSQREAFLE-QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1136 (1280)
Q Consensus 1063 ~~lr~lf~de----~~~vR~aAi~lfG~L~~~~~~~~~~~~~e-qv~~~LvpLLlhL~D~~~~V~~ack~tL~~~a~~L 1136 (1280)
..+.....|. +..+|.+|+.++|+++...+|....+|.. +++..+...+-+.++.+..|+..|+++++.++..+
T Consensus 781 ~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 781 QFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999987485557869999999999999998828824889872679999999885355788778999999999999873
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=116.95 Aligned_cols=235 Identities=14% Similarity=0.088 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCCCH--
Q ss_conf 18999999855212666--44048999999985208873-2217999999997520799-856999997311578613--
Q 000797 937 EVQTICLILTKSINRQQ--RFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-- 1010 (1280)
Q Consensus 937 ~i~~il~~l~~~L~s~~--~~~R~~a~aflsEll~~~~~-~~~l~~~ii~~L~~~l~D~-~~~VR~laLrGLg~la~~-- 1010 (1280)
..+.++..+...+++.. ..-|..++.+++.+...... ....++.+++.+...+.|+ ++.||..++..+|.+...
T Consensus 603 ~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 603 ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999998536888850899999999999987609999999999999987586508799999999999999887
Q ss_pred -HHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC-----------HHH
Q ss_conf -5665586789999952037--88589999999999986139935403416977987313145699-----------465
Q 000797 1011 -HIHQYATQVLSVILALLDD--LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-----------VKM 1076 (1280)
Q Consensus 1011 -~v~~~~~~lL~all~~L~d--~~~~V~~ea~~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~-----------~~v 1076 (1280)
++..|.+.+++.++..+.+ .+.++...++.+++.+...++. .+.+++..+...+...+.+.. ..+
T Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~-~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~ 761 (876)
T 1qgr_A 683 SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL 761 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 85464599999999997487123387639999999999997035-27999999999999998555899975889999999
Q ss_pred HHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHHHHHC-CCC--CHHHHHHHHHHHHHHCHHHHH-HHHHH
Q ss_conf 99999999997500488---------605879999997588999840-589--987999999999952101445-57753
Q 000797 1077 RRNAFAAFGALSNFGVG---------SQREAFLEQIHAMLPRLILHI-YDD--DLSVRQACRNTLKQVAPFMEI-GVYGI 1143 (1280)
Q Consensus 1077 R~aAi~lfG~L~~~~~~---------~~~~~~~eqv~~~LvpLLlhL-~D~--~~~V~~ack~tL~~~a~~L~~-~l~~l 1143 (1280)
|.++...++.+.+..++ ....+|.+++. +++..+ .|+ +..||++|-.+|+.++...+- .+...
T Consensus 762 r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~----~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 762 RESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFIL----SFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHH----HHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999999999974575555543889999999999----999998658888889999999999999988284889999
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 114677778889869999999999999494219999999886-5219993577999999987400
Q 000797 1144 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPWPIIQANAIYFSSSILC 1207 (1280)
Q Consensus 1144 ~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~-ylkS~~~~IR~aAa~fiG~l~~ 1207 (1280)
+.. . ++...+. .++|+.+.+|.+|++.+|.+.+
T Consensus 838 ~~~----------------~---------------~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 838 EAR----------------P---------------MIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HTS----------------H---------------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHC----------------H---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 704----------------8---------------999999987546887689999999999997
Done!